{"meta":{"query_hash":"6b69c32ec61a","filters":{"venue":"BMC Microbiology"},"cohort_total":316,"direct_labels_cover":0,"predictions_cover":316,"exported":316,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/6b69c32ec61a","api":"https://metacan.xera.ac/api/v1/cohort?venue=BMC+Microbiology"},"results":[{"id":"W1493966302","doi":"10.1186/s12866-015-0469-6","title":"Characterization of invasive Neisseria meningitidis strains from Québec, Canada, during a period of increased serogroup B disease, 2009-2013: phenotyping and genotyping with special emphasis on the non-carbohydrate protein vaccine targets","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Biology; Neisseria meningitidis; Multilocus sequence typing; Neisseria; Bacterial adhesin; Virology; Genotyping; Typing; Antigen; Microbiology; Gene; Genetics; Genotype; Virulence; Bacteria","score_opus":0.01027357589234581,"score_gpt":0.1872714165581141,"score_spread":0.1769978406657683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1493966302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332505,0.0004579734,0.00028260084,0.00008133193,0.000008496134,0.00008110784,0.004060741,0.000010058349,0.0016927258],"genre_scores_gemma":[0.991504,0.00046333158,0.0007835314,0.00010805621,0.000007747446,0.000023181054,0.0049919295,0.000006834854,0.0021113032],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996389,0.000011749088,0.00001887416,0.000087572036,0.00014744875,0.00009548722],"domain_scores_gemma":[0.9991393,0.0000337449,0.00013287576,0.0000193404,0.0004920811,0.00018259113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000270325,0.00045534217,0.00024570848,0.0010787905,0.0012590411,0.00063248974,0.00054195966,0.00028681167,0.00087571796],"category_scores_gemma":[0.00057464675,0.00012538544,0.00021794139,0.0017950356,0.00045599305,0.00017740294,0.00032838166,0.0002946853,0.00018387414],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028581798,0.0001138013,0.95192623,0.000118798,0.0000607703,0.00052737235,0.0015588762,0.00043889353,0.02944038,0.0000816725,0.0013280108,0.014119369],"study_design_scores_gemma":[0.0000038467133,0.00007095396,0.99600536,0.000014212976,0.000015872258,0.00020319337,0.00072368205,0.00025516486,0.0013639085,0.0000047116805,0.0013327977,0.0000063482216],"about_ca_topic_score_codex":0.96611816,"about_ca_topic_score_gemma":0.976,"teacher_disagreement_score":0.033881843,"about_ca_system_score_codex":0.0070519825,"about_ca_system_score_gemma":0.0065851314,"threshold_uncertainty_score":0.06816268},"labels":[],"label_agreement":null},{"id":"W1504765601","doi":"10.1186/1471-2180-1-5","title":"Phylogenetic analysis of methanogens from the bovine rumen","year":2001,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":229,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Dairy Farmers of Canada","keywords":"Biology; Rumen; Phylogenetic tree; Parasitology; Phylogenetics; Phylogenetic relationship; Zoology; Microbiology; Genetics; Gene; Food science; Fermentation","score_opus":0.028717289467087015,"score_gpt":0.23394274267222595,"score_spread":0.20522545320513894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1504765601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99293834,0.0032766773,0.0016019876,0.00007606415,0.000014368795,0.000052278476,0.0011096179,0.000022486278,0.000908345],"genre_scores_gemma":[0.9830467,0.0020396966,0.007814819,0.00012279728,0.00002396712,0.00007309541,0.005670895,0.000020619731,0.0011873314],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99961334,0.00006508354,0.000036210666,0.00009615954,0.000092072165,0.00009706265],"domain_scores_gemma":[0.9993649,0.00016261345,0.00011997158,0.000026053582,0.000209763,0.000116701376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004903203,0.0003972578,0.00040066187,0.0012517107,0.0005446426,0.0006337433,0.0002199129,0.00036489867,0.000685989],"category_scores_gemma":[0.0008000187,0.00017903293,0.00029439945,0.0009453178,0.00020342464,0.00021735326,0.00035594744,0.0004047351,0.00049914],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009681871,0.000109431385,0.0574159,0.00054497935,0.000058127436,0.00020171246,0.00086417934,0.0003673634,0.91438246,0.00008197376,0.00012962805,0.024876],"study_design_scores_gemma":[0.00005163217,0.0015251456,0.86526865,0.00027475946,0.00031917277,0.0020687536,0.001863787,0.003386534,0.110849574,0.00024784906,0.014104916,0.000039375627],"about_ca_topic_score_codex":0.0031467031,"about_ca_topic_score_gemma":0.0029648677,"teacher_disagreement_score":0.0031467031,"about_ca_system_score_codex":0.00035391535,"about_ca_system_score_gemma":0.0003117111,"threshold_uncertainty_score":0.006256759},"labels":[],"label_agreement":null},{"id":"W1514099916","doi":"10.1186/s12866-015-0434-4","title":"Prevalence and antimicrobial susceptibility profile of listeria species from ready-to-eat foods of animal origin in Gondar Town, Ethiopia","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"University of Gondar","keywords":"Biology; Listeria; Listeria monocytogenes; Nalidixic acid; Antimicrobial; Cloxacillin; Penicillin; Ampicillin; Microbiology; Veterinary medicine; Food science; Antibiotics; Medicine; Bacteria","score_opus":0.09440309755237225,"score_gpt":0.32779700933356365,"score_spread":0.2333939117811914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1514099916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994808,0.00016326774,0.000027576141,0.000011521335,0.0000033725007,0.0000073299047,0.00011978803,7.6578544e-7,0.00018567365],"genre_scores_gemma":[0.9993086,0.0002467248,0.00013787339,0.000024163044,0.0000033297065,0.0000080324435,0.0001198827,5.982253e-7,0.00015080086],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997551,0.0000483395,0.00003215456,0.00005875193,0.000051082938,0.00005448818],"domain_scores_gemma":[0.9996088,0.00007732211,0.00015736882,0.000015738106,0.000073124495,0.00006751433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035984226,0.00039086927,0.00023379631,0.0010033867,0.00051620684,0.00070626626,0.00034514032,0.00032096097,0.00092536455],"category_scores_gemma":[0.00046566426,0.0003146233,0.00022192365,0.00054740516,0.0003178492,0.0002778092,0.00030198944,0.00020575301,0.00016208383],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017659875,0.0001618893,0.98704785,0.00012888896,0.000042195523,0.0014285087,0.0010679694,0.000047051362,0.0059113535,0.000029611174,0.00011013748,0.0038479285],"study_design_scores_gemma":[0.0000074218956,0.0003372455,0.9919315,0.000062687766,0.000041008112,0.002492575,0.0034256405,0.00006918129,0.0010595948,0.000024210412,0.0005403732,0.000008653969],"about_ca_topic_score_codex":0.0028736182,"about_ca_topic_score_gemma":0.0038612264,"teacher_disagreement_score":0.0028736182,"about_ca_system_score_codex":0.000322407,"about_ca_system_score_gemma":0.000340523,"threshold_uncertainty_score":0.005713761},"labels":[],"label_agreement":null},{"id":"W1522844639","doi":"10.1186/1471-2180-4-41","title":"A touchdown nucleic acid amplification protocol as an alternative to culture backup for immunofluorescence in the routine diagnosis of acute viral respiratory tract infections","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Northern Ireland Chest Heart and Stroke; Heart and Stroke Foundation of Canada","keywords":"Immunofluorescence; Nucleic Acid Amplification Tests; Biology; Virology; Nucleic acid test; Virus; Touchdown; Viral culture; Direct fluorescent antibody; Immunology; Antibody; Pathology; Medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.05181059789395257,"score_gpt":0.40522934925833165,"score_spread":0.35341875136437906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1522844639","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3749969,0.0075868354,0.6031614,0.00063583563,0.000975792,0.00424961,0.0009308466,0.0029238549,0.0045389384],"genre_scores_gemma":[0.21231614,0.0024631075,0.7748555,0.0005817759,0.00019539325,0.0038904403,0.0017546361,0.00037235877,0.0035706118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99177116,0.0036001152,0.0007425291,0.0016758968,0.001947354,0.0002629427],"domain_scores_gemma":[0.99553454,0.0020441,0.0006686185,0.00084923825,0.0007242701,0.00017917003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0060568415,0.0013058598,0.0008676788,0.0012440408,0.00045797904,0.00096164795,0.0016308296,0.0017477426,0.0027272291],"category_scores_gemma":[0.006591124,0.001360553,0.0006876227,0.0007474209,0.0010250893,0.0009917062,0.0010766166,0.0013757036,0.0024314367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006009561,0.0001721906,0.00533166,0.000505623,0.00005057853,0.00040108044,0.0002941857,0.00037003038,0.94308776,0.0002575249,0.000890636,0.048037793],"study_design_scores_gemma":[0.00016387136,0.0048255255,0.02791384,0.0003927783,0.0003073042,0.0074966447,0.00025152846,0.0117948,0.9206723,0.00055437285,0.025468413,0.00015860933],"about_ca_topic_score_codex":0.00022471612,"about_ca_topic_score_gemma":0.00054648507,"teacher_disagreement_score":0.0060568415,"about_ca_system_score_codex":0.00033514368,"about_ca_system_score_gemma":0.000523246,"threshold_uncertainty_score":0.032032013},"labels":[],"label_agreement":null},{"id":"W1526988544","doi":"10.1186/1471-2180-6-24","title":"The Subviral RNA Database: a toolbox for viroids, the hepatitis delta virus and satellite RNAs research","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Agricultural Research Service; Université de Sherbrooke; U.S. Department of Agriculture","keywords":"Biology; Virology; Satellite; HEPATITIS DELTA; RNA; Parasitology; Delta; Virus; Hepatitis B virus; Computational biology; Database; Genetics; Gene; Computer science; Zoology","score_opus":0.056451030511926716,"score_gpt":0.3372728712863804,"score_spread":0.28082184077445366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1526988544","genre_codex":"methods","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01244188,0.015598351,0.447324,0.0028221314,0.0006273108,0.0013589474,0.2708444,0.21947496,0.029508047],"genre_scores_gemma":[0.021556463,0.008570494,0.5574631,0.0009340304,0.00038508605,0.0016573548,0.38553292,0.013089723,0.010810851],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99856406,0.00030257058,0.0003998791,0.00028352643,0.0003709273,0.00007914138],"domain_scores_gemma":[0.99388367,0.002301104,0.00058205466,0.00113134,0.0007887556,0.0013129971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004664724,0.0016283047,0.0028070188,0.010354016,0.0009224755,0.0039986824,0.004321894,0.002101307,0.036266875],"category_scores_gemma":[0.01023529,0.0012856214,0.0010683322,0.008960966,0.0006188057,0.0060739745,0.0042783325,0.0023074138,0.03534124],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021392843,0.0003550977,0.0041071083,0.009455181,0.00038492266,0.0011016298,0.00091522274,0.00261557,0.048560344,0.024629481,0.34056976,0.56516635],"study_design_scores_gemma":[0.0005087941,0.00025195326,0.0055758543,0.0011649324,0.00020662865,0.0017132511,0.00039340265,0.011042566,0.019348668,0.02704819,0.9325377,0.00020809758],"about_ca_topic_score_codex":0.0015464283,"about_ca_topic_score_gemma":0.001769064,"teacher_disagreement_score":0.036266875,"about_ca_system_score_codex":0.0008016247,"about_ca_system_score_gemma":0.003083708,"threshold_uncertainty_score":0.12132472},"labels":[],"label_agreement":null},{"id":"W1527530427","doi":"10.1186/1471-2180-6-63","title":"Interaction between Mycobacterium avium subsp. paratuberculosis and environmental protozoa","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Queen's University Belfast","keywords":"Biology; Protozoa; Paratuberculosis; Parasitology; Mycobacterium avium subsp. paratuberculosis; Mycobacterium avium complex; Microbiology; Mycobacterium; Cryptosporidium; Mycology; Virology; Bacteria; Zoology; Feces; Genetics","score_opus":0.010122457278147326,"score_gpt":0.24186096166877022,"score_spread":0.23173850439062288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1527530427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808276,0.0007901856,0.00030922855,0.000056209377,0.000008358396,0.000013135778,0.0000730132,0.000010416825,0.0006566105],"genre_scores_gemma":[0.998212,0.0002294706,0.0007611748,0.000052594336,0.000010444636,0.000016437347,0.000204542,0.0000028709824,0.0005104103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995578,0.00008532873,0.000027197117,0.000072236486,0.000132928,0.00012442187],"domain_scores_gemma":[0.9996383,0.000105546984,0.000072264294,0.000023345636,0.000104249106,0.000056246754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026659173,0.000268272,0.0003319397,0.00022480977,0.0002682045,0.00038941932,0.0003144017,0.00064816134,0.0011844125],"category_scores_gemma":[0.00039037326,0.00010449135,0.00015869204,0.00017628768,0.00017609414,0.00020126882,0.00048615318,0.00030800607,0.0002877978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034670916,0.0001543243,0.040336344,0.00024644024,0.00003544753,0.00054442417,0.000107627886,0.0001126634,0.9529959,0.000054483164,0.00009066514,0.004974962],"study_design_scores_gemma":[0.00004043436,0.00340515,0.52187663,0.00009308043,0.00011033448,0.0042600036,0.00095966505,0.002088903,0.46172845,0.00019660556,0.0052199773,0.000020781574],"about_ca_topic_score_codex":0.0015516365,"about_ca_topic_score_gemma":0.0024155292,"teacher_disagreement_score":0.0015516365,"about_ca_system_score_codex":0.00029999734,"about_ca_system_score_gemma":0.0002627123,"threshold_uncertainty_score":0.0039622188},"labels":[],"label_agreement":null},{"id":"W1547075801","doi":"10.1186/1471-2180-6-29","title":"ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds De La Recherche Scientifique - FNRS; Institute for Catastrophic Loss Reduction","keywords":"UniProt; Biology; Database; Genome; Archaea; Computational biology; Genetics; Gene; Computer science","score_opus":0.007448018917484116,"score_gpt":0.1960198800600282,"score_spread":0.1885718611425441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1547075801","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024087202,0.0092629995,0.04649297,0.00032290784,0.00018708516,0.0003143379,0.8741855,0.037520695,0.007626384],"genre_scores_gemma":[0.020188492,0.0029489542,0.04002295,0.00019854582,0.00006170156,0.00034603584,0.93263584,0.0024071762,0.0011903081],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99886537,0.0001569695,0.00034815178,0.0002811364,0.00023385732,0.00011449861],"domain_scores_gemma":[0.99732035,0.00092810317,0.00051804446,0.0005201063,0.0003491499,0.00036432093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010624167,0.002294843,0.0020425704,0.0088112755,0.000673358,0.0024837023,0.0023406614,0.0019157213,0.018470194],"category_scores_gemma":[0.005680305,0.0008274182,0.0013025283,0.011617368,0.0005182128,0.004245494,0.0033820742,0.0014082636,0.015332407],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006558657,0.0006818577,0.015108093,0.03983943,0.00073459145,0.005825418,0.0020833411,0.007880726,0.11550022,0.01665917,0.31900278,0.4701258],"study_design_scores_gemma":[0.0005032215,0.00039286847,0.02019224,0.0020491027,0.0005362608,0.0040105158,0.00055955944,0.004040329,0.020210482,0.00927699,0.93794554,0.00028295635],"about_ca_topic_score_codex":0.0010750486,"about_ca_topic_score_gemma":0.0010750655,"teacher_disagreement_score":0.018470194,"about_ca_system_score_codex":0.0006408741,"about_ca_system_score_gemma":0.0018947248,"threshold_uncertainty_score":0.061788976},"labels":[],"label_agreement":null},{"id":"W1570509066","doi":"10.1186/1471-2180-6-28","title":"Identification of Enterobacter sakazakii from closely related species: The use of Artificial Neural Networks in the analysis of biochemical and 16S rDNA data","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Canada; Centers for Disease Control and Prevention; Justus Liebig Universität Gießen; Children's Hospital Los Angeles","keywords":"Biology; Enterobacter; Identification (biology); 16S ribosomal RNA; Computational biology; Genetics; Gene; Escherichia coli; Ecology","score_opus":0.043805191725719034,"score_gpt":0.273893975377275,"score_spread":0.23008878365155597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1570509066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78942764,0.0011959688,0.20544033,0.0003703347,0.000060393384,0.00012420704,0.00042624612,0.0004765822,0.0024783106],"genre_scores_gemma":[0.92840254,0.0003877614,0.06987533,0.000049180606,0.0000178941,0.00006589728,0.0005020291,0.00001639703,0.00068280834],"study_design_codex":"simulation_or_modeling","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999577,0.00016482703,0.00004938703,0.00009549551,0.000084603445,0.000028776472],"domain_scores_gemma":[0.9987816,0.00074653263,0.00018438256,0.000050670933,0.00020031475,0.00003648657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012461904,0.00065714616,0.00034055236,0.0010025792,0.0002610437,0.00075665815,0.00038841733,0.0006218404,0.00044202106],"category_scores_gemma":[0.0037940699,0.00016065377,0.0003474528,0.00058632094,0.00021354563,0.00051106326,0.00042228037,0.00049161195,0.00019545168],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075668516,0.00055243133,0.09346701,0.0004703709,0.00036171297,0.00037091016,0.00031422664,0.4289147,0.071264975,0.0009097424,0.00081697176,0.40180027],"study_design_scores_gemma":[0.000006630146,0.00012587357,0.012455889,0.00003666569,0.000044158947,0.00009391287,0.000073554285,0.97525615,0.010532061,0.00096522406,0.00038715682,0.000022698476],"about_ca_topic_score_codex":0.0029351471,"about_ca_topic_score_gemma":0.003388722,"teacher_disagreement_score":0.0029351471,"about_ca_system_score_codex":0.0004155455,"about_ca_system_score_gemma":0.00046612148,"threshold_uncertainty_score":0.006590545},"labels":[],"label_agreement":null},{"id":"W1572249917","doi":"10.1186/s12866-015-0433-5","title":"Extensive characterization of Campylobacter jejuni chicken isolates to uncover genes involved in the ability to compete for gut colonization","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Université de Montréal; Natural Sciences and Engineering Research Council","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Biology; Colonization; Campylobacter jejuni; Parasitology; Microbiology; Gene; Campylobacter; Bacterial genetics; Colonisation resistance; Genetics; Bacteria; Zoology; Escherichia coli","score_opus":0.05056101299572915,"score_gpt":0.25993545165919874,"score_spread":0.20937443866346958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1572249917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980355,0.00019611917,0.0005983365,0.000019837202,0.0000050306962,0.0000451934,0.00062206807,0.000008285599,0.0004695497],"genre_scores_gemma":[0.99297863,0.00024251983,0.0033708778,0.000047026402,0.0000095017,0.000077184115,0.0025673686,0.000013135164,0.0006937368],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99962723,0.00003785193,0.00004382417,0.000114254006,0.000103400096,0.0000733958],"domain_scores_gemma":[0.9995976,0.000084409425,0.00008417847,0.000044048295,0.00012803715,0.000061881896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023583768,0.0004884148,0.0003293244,0.00094271346,0.0002787367,0.00032627306,0.00020065432,0.000313045,0.0005782929],"category_scores_gemma":[0.0004274026,0.000117542,0.00036654904,0.0007737362,0.00021395262,0.00017916645,0.00032115565,0.00033842566,0.00024346418],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001837322,0.00013430156,0.023423888,0.000092214184,0.000024322035,0.00018332459,0.00020023376,0.00008474381,0.9723121,0.000015482394,0.000039946393,0.0033058021],"study_design_scores_gemma":[0.000015550493,0.0021131737,0.69984084,0.000031995605,0.00019840516,0.0027550287,0.0008130183,0.0006569904,0.29135093,0.00004571303,0.0021583014,0.000020064717],"about_ca_topic_score_codex":0.002626656,"about_ca_topic_score_gemma":0.0022999253,"teacher_disagreement_score":0.002626656,"about_ca_system_score_codex":0.0001886508,"about_ca_system_score_gemma":0.00024833993,"threshold_uncertainty_score":0.005222738},"labels":[],"label_agreement":null},{"id":"W1585042512","doi":"10.1186/1471-2180-3-1","title":"Characterization of the nodulation plasmid encoded chemoreceptor gene mcpG from Rhizobium leguminosarum","year":2003,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Rhizobium leguminosarum; Chemotaxis; Plasmid; Genetics; Gene; Mutant; Rhizobium; Rhizobiaceae; Receptor; Bacteria; Symbiosis","score_opus":0.011530767832310721,"score_gpt":0.17737826865668155,"score_spread":0.16584750082437083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1585042512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99401337,0.000812253,0.0023133813,0.00016884932,0.000012221692,0.000052847252,0.0021427022,0.000028927736,0.00045548644],"genre_scores_gemma":[0.97766566,0.0005491379,0.00882508,0.0001039651,0.000017695056,0.00006828662,0.011569463,0.000036838537,0.0011638289],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991846,0.000008951758,0.000008638551,0.000018201077,0.000026822883,0.000018940158],"domain_scores_gemma":[0.99980503,0.000039533,0.000057461617,0.000019260084,0.000033208944,0.000045500074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104813786,0.0003800017,0.00025993751,0.0003503424,0.0001179671,0.00022295439,0.0002844919,0.000321367,0.0007341502],"category_scores_gemma":[0.0003162252,0.00009891748,0.00037479706,0.00042550778,0.00013172733,0.00018786422,0.00027839834,0.0004418003,0.00071503106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007077115,0.00002331838,0.0010583496,0.000058358,0.0000037526904,0.00014814046,0.000027234142,0.000028077486,0.99684334,0.00003120091,0.000022803726,0.0016845473],"study_design_scores_gemma":[0.00011826766,0.0013539728,0.17312063,0.00009611096,0.00015695737,0.006846149,0.00044415705,0.002743447,0.80136335,0.00034891657,0.013370015,0.000038033704],"about_ca_topic_score_codex":0.0012364585,"about_ca_topic_score_gemma":0.0008439067,"teacher_disagreement_score":0.0012364585,"about_ca_system_score_codex":0.0002804435,"about_ca_system_score_gemma":0.00025433724,"threshold_uncertainty_score":0.0024585128},"labels":[],"label_agreement":null},{"id":"W1605578432","doi":"10.1186/s12866-015-0426-4","title":"Development of a comparative genomic fingerprinting assay for rapid and high resolution genotyping of Arcobacter butzleri","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","keywords":"Subtyping; Biology; Arcobacter; Genotyping; Genetics; Typing; Context (archaeology); Molecular epidemiology; Computational biology; Population; Clade; Genotype; Gene; Phylogenetics; 16S ribosomal RNA","score_opus":0.09880039000095263,"score_gpt":0.269026444512231,"score_spread":0.17022605451127837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1605578432","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8548081,0.0011336992,0.13841549,0.0001772364,0.000036489895,0.0006548542,0.003158154,0.0005002924,0.0011157248],"genre_scores_gemma":[0.65252364,0.00066379964,0.3384843,0.00012848564,0.00001807936,0.00070203724,0.006879046,0.000038165716,0.0005624981],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983368,0.00037514875,0.0001397769,0.00057004095,0.00047348117,0.00010481142],"domain_scores_gemma":[0.9990476,0.0003258607,0.00021812087,0.00012822385,0.00020066144,0.00007953593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012887287,0.00062596623,0.00055222126,0.0012105013,0.00016663258,0.0005362726,0.000600173,0.000717082,0.0006610646],"category_scores_gemma":[0.0021643671,0.00026353114,0.00053775747,0.00076577486,0.00024570612,0.00036218084,0.0005623906,0.00064992113,0.00042654847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018667408,0.00018326977,0.0153436605,0.0001268121,0.00005132725,0.00006228332,0.000058821166,0.0008224818,0.9532245,0.00008107983,0.00014750006,0.029711494],"study_design_scores_gemma":[0.00008388427,0.0022944573,0.09288316,0.00006430219,0.0002098064,0.0012645881,0.00009697348,0.020472322,0.877433,0.00019610772,0.0049468908,0.00005447964],"about_ca_topic_score_codex":0.0007536662,"about_ca_topic_score_gemma":0.0010089168,"teacher_disagreement_score":0.0012887287,"about_ca_system_score_codex":0.00031222028,"about_ca_system_score_gemma":0.00056018645,"threshold_uncertainty_score":0.006815493},"labels":[],"label_agreement":null},{"id":"W1613142324","doi":"10.1186/1471-2180-4-8","title":"C. trachomatis-infection accelerates metabolism of phosphatidylcholine derived from low density lipoprotein but does not affect phosphatidylcholine secretion from hepatocytes","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Chlamydia trachomatis; Choline; Biology; Phosphatidylcholine; Metabolism; Secretion; Molecular biology; Biochemistry; Phospholipid; Immunology","score_opus":0.019930924179581932,"score_gpt":0.26453823932889087,"score_spread":0.24460731514930895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1613142324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956958,0.0019181932,0.00049905287,0.00013678352,0.00004210078,0.000023936382,0.0004202158,0.000053944812,0.0012098643],"genre_scores_gemma":[0.9956232,0.00074854965,0.0007631821,0.00006470541,0.000012418687,0.000034583747,0.00043266948,0.000011898916,0.0023087678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997603,0.00003127094,0.000024384348,0.00003474932,0.000066469955,0.0000827381],"domain_scores_gemma":[0.99980766,0.00003662272,0.000050262257,0.000029921912,0.00003340489,0.00004218201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015530309,0.00033714948,0.0002567167,0.000168596,0.00019346314,0.00036184472,0.00017975921,0.00036726435,0.0021318884],"category_scores_gemma":[0.00018882698,0.00015630289,0.00039373862,0.00016332045,0.00023166742,0.00022315259,0.00021579092,0.00060127716,0.0004183835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027589255,0.000050173283,0.0004180489,0.00005634725,0.000005823276,0.00005494573,0.000019840654,0.000011131976,0.9985043,0.000016245427,0.000027657365,0.0005595956],"study_design_scores_gemma":[0.000017512986,0.0012367874,0.022467671,0.00001117259,0.000018880926,0.00026940045,0.00006106859,0.00025316162,0.9744951,0.000014899025,0.0011484623,0.0000058112632],"about_ca_topic_score_codex":0.0021424529,"about_ca_topic_score_gemma":0.0025730957,"teacher_disagreement_score":0.0021424529,"about_ca_system_score_codex":0.0004645156,"about_ca_system_score_gemma":0.00031650628,"threshold_uncertainty_score":0.0071318746},"labels":[],"label_agreement":null},{"id":"W1655392799","doi":"10.1186/s12866-015-0476-7","title":"Prevalence, antimicrobial susceptibility and virulotyping of Listeria species and Listeria monocytogenes isolated from open-air fish markets","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"Université de Montréal; Universiti Malaya; Islamic Azad University","keywords":"Biology; Listeria monocytogenes; Microbiology; Ampicillin; Listeria; Tetracycline; Penicillin; Kanamycin; Cefotaxime; Smoked fish; Gentamicin; Antibiotics; Fish <Actinopterygii>; Bacteria; Fishery","score_opus":0.0841583081030153,"score_gpt":0.30686859941272987,"score_spread":0.22271029130971456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1655392799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99978215,0.00005832694,0.000022081396,0.0000060041116,0.0000012669236,0.0000028100906,0.00004548762,9.789075e-7,0.000080788566],"genre_scores_gemma":[0.9995726,0.00007118337,0.000102816164,0.000013248592,0.0000049994774,0.000005640761,0.0001318491,6.528485e-7,0.00009709007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996106,0.000044690638,0.00004959504,0.000083963016,0.00012470297,0.0000864962],"domain_scores_gemma":[0.999411,0.0000700273,0.00031425865,0.000025777674,0.00011301977,0.000065855806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003109782,0.00028761156,0.00020681314,0.00079806463,0.000250068,0.0003870495,0.00025586662,0.00030877313,0.00099512],"category_scores_gemma":[0.00072138576,0.0001741907,0.00021367149,0.00036048022,0.00033468546,0.00027275103,0.0003378744,0.00018805958,0.00017356913],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015318877,0.00006839105,0.985551,0.00003548825,0.000022300515,0.000273415,0.0003267229,0.000024636443,0.010781933,0.0000068437594,0.00003859399,0.002717509],"study_design_scores_gemma":[0.0000072364824,0.00033825703,0.9953616,0.000012362353,0.000025659081,0.0011094103,0.00082899263,0.000046270554,0.0020383152,0.000014478743,0.00021265302,0.000004844742],"about_ca_topic_score_codex":0.002578951,"about_ca_topic_score_gemma":0.002926242,"teacher_disagreement_score":0.002578951,"about_ca_system_score_codex":0.00022013065,"about_ca_system_score_gemma":0.00020400657,"threshold_uncertainty_score":0.005127907},"labels":[],"label_agreement":null},{"id":"W1659400417","doi":"10.1186/1471-2180-6-14","title":"Stationary phase expression of the arginine biosynthetic operon argCBH in Escherichia coli","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Operon; Escherichia coli; Stationary phase; Parasitology; Microbiology; Escherichia coli Proteins; Genetics; Computational biology; Gene; Zoology","score_opus":0.0069828178572488245,"score_gpt":0.2277551049747544,"score_spread":0.22077228711750557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1659400417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996385,0.0004885073,0.0021389462,0.000053535754,0.000013756437,0.000023752496,0.00039318381,0.00006989981,0.00043341183],"genre_scores_gemma":[0.9923862,0.00041815094,0.004294762,0.000039229923,0.000010028891,0.000027991318,0.0012590294,0.000041612944,0.0015229231],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987936,0.000017002832,0.00001190038,0.000021612666,0.000049700626,0.000020380063],"domain_scores_gemma":[0.99983513,0.000041175204,0.000043679716,0.000017990997,0.000034156346,0.000027802833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012143426,0.00029624844,0.00015965581,0.00016954537,0.000089504974,0.00028157813,0.00014305893,0.00015887358,0.0005170282],"category_scores_gemma":[0.00018932257,0.000112108835,0.0001399133,0.00015046033,0.00018454915,0.00010591102,0.00018652184,0.0003242386,0.00046031555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096596494,0.000022192946,0.000448458,0.00002746926,0.0000017541563,0.000023655763,0.000007183191,0.00004483877,0.9983005,0.000019319483,0.000013552284,0.0009944325],"study_design_scores_gemma":[0.000010474226,0.00020416126,0.0076768114,0.000005226139,0.000007671062,0.0001263796,0.00002263732,0.0007549757,0.99051124,0.00003207513,0.00064288615,0.000005426173],"about_ca_topic_score_codex":0.0008902716,"about_ca_topic_score_gemma":0.0009469962,"teacher_disagreement_score":0.0008902716,"about_ca_system_score_codex":0.0003460952,"about_ca_system_score_gemma":0.00026840274,"threshold_uncertainty_score":0.002511084},"labels":[],"label_agreement":null},{"id":"W1744346524","doi":"10.1186/1471-2180-5-65","title":"Specific and sensitive detection of the conifer pathogen Gremmeniella abietina by nested PCR","year":2005,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Forest Service; U.S. Forest Service; Sveriges Lantbruksuniversitet; Vetenskapsrådet; Svenska Forskningsrådet Formas; Forskningsrådet för Arbetsliv och Socialvetenskap","keywords":"Biology; Nested polymerase chain reaction; Pathogen; Parasitology; Ecology; Botany; Polymerase chain reaction; Zoology; Genetics; Gene","score_opus":0.00626464699573368,"score_gpt":0.18596979346615752,"score_spread":0.17970514647042385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1744346524","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43939248,0.0044407225,0.5458663,0.00023940635,0.00019225359,0.0013540573,0.0016019262,0.0020998586,0.0048129475],"genre_scores_gemma":[0.44269735,0.0020988681,0.5461867,0.00023504773,0.000049058188,0.0010623084,0.0025851356,0.00021679698,0.004868705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972824,0.00050759705,0.00021353143,0.0011059983,0.00064576167,0.0002447193],"domain_scores_gemma":[0.9985116,0.0005584034,0.00035817607,0.00015629859,0.00033872918,0.00007675561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014246989,0.0013376507,0.00059154,0.00066568167,0.00022730265,0.000579239,0.0007692677,0.00078413455,0.0012380324],"category_scores_gemma":[0.0018088855,0.0010611325,0.0005558425,0.00024910565,0.00073250826,0.0005057279,0.0006467831,0.001023863,0.0015628054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000151485365,0.000012341304,0.00034171465,0.00007493661,0.0000030998217,0.000023107923,0.00003871023,0.000035092486,0.9976739,0.000039477523,0.000023320234,0.0017191393],"study_design_scores_gemma":[0.000019805932,0.0003438989,0.0041903593,0.00006567238,0.000060235347,0.00085480517,0.000084869505,0.002799862,0.9860071,0.00015384791,0.0053932327,0.00002634644],"about_ca_topic_score_codex":0.0005461401,"about_ca_topic_score_gemma":0.0014052605,"teacher_disagreement_score":0.0014246989,"about_ca_system_score_codex":0.00031837024,"about_ca_system_score_gemma":0.0004839944,"threshold_uncertainty_score":0.007534623},"labels":[],"label_agreement":null},{"id":"W1747749436","doi":"10.1186/1471-2180-6-7","title":"Generation, annotation, and analysis of an extensive Aspergillus niger EST collection","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada; Génome Québec; Genome Canada","keywords":"GenBank; UniProt; Biology; Aspergillus niger; Annotation; Gene Annotation; Gene; Genome; Genome project; Expressed sequence tag; Computational biology; Genetics; Biotechnology","score_opus":0.011739149397484883,"score_gpt":0.20869279227292373,"score_spread":0.19695364287543884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1747749436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63153946,0.0048038703,0.1657363,0.00057967013,0.00021925366,0.0016480313,0.18752441,0.0025426934,0.0054063876],"genre_scores_gemma":[0.21864168,0.005795753,0.19754212,0.00026076098,0.00009222781,0.0009522226,0.5717738,0.00057307514,0.0043683723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932575,0.00010518665,0.00013793442,0.00017560132,0.00016009556,0.0000954087],"domain_scores_gemma":[0.99864453,0.00039474704,0.00019239243,0.00017476847,0.000391609,0.00020188566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007730106,0.0012071852,0.00090089854,0.0020152242,0.0007420329,0.00096891617,0.0007758389,0.0005835568,0.0016229346],"category_scores_gemma":[0.0014861879,0.0003721123,0.0009453826,0.0037792032,0.00029263675,0.0004586416,0.0010101339,0.0011962986,0.0026513985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005183077,0.00015312585,0.002707636,0.00054586394,0.000038417405,0.00071259425,0.00019970843,0.0008652928,0.97271496,0.00021706012,0.0012423622,0.020084728],"study_design_scores_gemma":[0.00032829132,0.0008773789,0.10061564,0.00044623445,0.0007290189,0.004787344,0.000900237,0.009636261,0.7977877,0.0013038617,0.08244518,0.00014285582],"about_ca_topic_score_codex":0.0016324967,"about_ca_topic_score_gemma":0.0017000685,"teacher_disagreement_score":0.0020152242,"about_ca_system_score_codex":0.00038984016,"about_ca_system_score_gemma":0.0008913781,"threshold_uncertainty_score":0.005429268},"labels":[],"label_agreement":null},{"id":"W1772553699","doi":"10.1186/1471-2180-3-12","title":"Characterisation of methionine adenosyltransferase from Mycobacterium smegmatis and M. tuberculosis","year":2003,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"National Institute of Allergy and Infectious Diseases; Ministry of Agriculture, Forestry and Fisheries","keywords":"Methionine Adenosyltransferase; Mycobacterium smegmatis; Methionine; Biology; Enzyme; Biochemistry; Mycobacterium tuberculosis; Biosynthesis; Amino acid; Tuberculosis","score_opus":0.022862168613975622,"score_gpt":0.28471399865774905,"score_spread":0.26185183004377344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1772553699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97918963,0.006465641,0.008988534,0.0004111877,0.00009885686,0.00010107001,0.0026705663,0.00013831176,0.001936129],"genre_scores_gemma":[0.9673779,0.0025145516,0.013836716,0.00013695552,0.00006157594,0.00007634924,0.012321868,0.000067889916,0.0036061376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999788,0.00002600036,0.000031220614,0.000038233364,0.000083093146,0.000033487802],"domain_scores_gemma":[0.99965453,0.000100795405,0.000071524424,0.000039810628,0.00009416828,0.000039183404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025487688,0.0004922825,0.00047662196,0.00039801988,0.00014826664,0.00034142472,0.00029703692,0.00058082613,0.0009678888],"category_scores_gemma":[0.000662729,0.00016154209,0.00055650005,0.00059672765,0.00020198456,0.00025439519,0.00022260603,0.0005867288,0.0010680488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007595591,0.000021937225,0.0005107214,0.00010988957,0.000008138391,0.00008066349,0.000024222045,0.000053211894,0.9974474,0.000042468993,0.000029783881,0.0015957009],"study_design_scores_gemma":[0.000029887038,0.00046467604,0.0124909775,0.00003434031,0.00006313687,0.001596609,0.000073817646,0.0006974716,0.9745214,0.00012336984,0.009893827,0.000010606021],"about_ca_topic_score_codex":0.0010397973,"about_ca_topic_score_gemma":0.0010316117,"teacher_disagreement_score":0.0010397973,"about_ca_system_score_codex":0.00035259,"about_ca_system_score_gemma":0.00034588657,"threshold_uncertainty_score":0.0032379031},"labels":[],"label_agreement":null},{"id":"W1776209622","doi":"10.1186/1471-2180-6-94","title":"The biochemical differentiation of Enterobacter sakazakii genotypes","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Biology; 16S ribosomal RNA; Enterobacter; Genotype; Phylogenetic tree; Cluster (spacecraft); Genotyping; Microbiology; Genetics; Bacteria; Gene; Escherichia coli","score_opus":0.006408703766177359,"score_gpt":0.22837192020917005,"score_spread":0.2219632164429927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1776209622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845827,0.00024503772,0.0003740888,0.000022961052,0.000004513351,0.000011559743,0.00039600924,0.000007450652,0.0004801778],"genre_scores_gemma":[0.9964283,0.0001837826,0.0017548478,0.000009558036,0.0000034092027,0.000014693027,0.001250784,0.0000055271685,0.00034913598],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99973327,0.00003997142,0.00005353319,0.00006571038,0.00006173508,0.000045751607],"domain_scores_gemma":[0.9991467,0.00016043242,0.00023724309,0.00004975523,0.0002631532,0.00014275307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019565772,0.00033331214,0.00018189823,0.0007342401,0.00015866692,0.0003757983,0.00014624305,0.00027342746,0.0010610032],"category_scores_gemma":[0.001071299,0.00014087986,0.0001405321,0.0005660243,0.00016669156,0.00023898766,0.00032250935,0.00022303454,0.00043601423],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011996845,0.00013092709,0.17861705,0.0002787281,0.000042080366,0.00019175072,0.00038741247,0.00022440667,0.8049587,0.000075894844,0.000114992894,0.013778365],"study_design_scores_gemma":[0.000028803825,0.0010151675,0.75154656,0.000048538845,0.0001139535,0.0018831545,0.00085239415,0.0007037434,0.24119243,0.00015105026,0.0024384207,0.000025746207],"about_ca_topic_score_codex":0.0008294184,"about_ca_topic_score_gemma":0.0008834877,"teacher_disagreement_score":0.0010610032,"about_ca_system_score_codex":0.0001598063,"about_ca_system_score_gemma":0.0001806317,"threshold_uncertainty_score":0.003549397},"labels":[],"label_agreement":null},{"id":"W1789948341","doi":"10.1186/s12866-015-0526-1","title":"The Listeria monocytogenes Core-Genome Sequence Typer (LmCGST): a bioinformatic pipeline for molecular characterization with next-generation sequence data","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"","keywords":"Biology; Multilocus sequence typing; Genome; Genetics; Computational biology; Whole genome sequencing; Phylogenetic tree; In silico; Reference genome; Locus (genetics); Sequence analysis; Gene; Genotype","score_opus":0.38160634007051725,"score_gpt":0.3633274466407189,"score_spread":0.018278893429798326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1789948341","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02912943,0.00060259603,0.7601408,0.00038831684,0.00014742473,0.00083011785,0.03692158,0.16969894,0.0021408645],"genre_scores_gemma":[0.056122962,0.00035540503,0.86768425,0.00036650346,0.000044536602,0.0011237509,0.059959088,0.012508707,0.0018348361],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984792,0.0002146453,0.00012865724,0.00057333696,0.00045682865,0.00014733936],"domain_scores_gemma":[0.9984724,0.00042572376,0.00028558692,0.00024885684,0.00039894308,0.00016846496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003667383,0.002291771,0.0011557753,0.00295658,0.0009864405,0.0016571695,0.0019810032,0.0009303777,0.0060003353],"category_scores_gemma":[0.004318059,0.0014711728,0.0020012779,0.0016415196,0.0005067772,0.0012038224,0.0017630509,0.0022325262,0.0059198206],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034292976,0.0005259083,0.034101035,0.0025996752,0.00096613093,0.0011302725,0.0015102621,0.019529099,0.36052683,0.0056411317,0.16789852,0.40214175],"study_design_scores_gemma":[0.0007350464,0.00077323493,0.038970724,0.00047013344,0.0004995013,0.0019020778,0.00032278337,0.37781703,0.38255683,0.013090002,0.18218721,0.00067534554],"about_ca_topic_score_codex":0.0035907659,"about_ca_topic_score_gemma":0.003399713,"teacher_disagreement_score":0.0060003353,"about_ca_system_score_codex":0.0010592797,"about_ca_system_score_gemma":0.0026076587,"threshold_uncertainty_score":0.020073116},"labels":[],"label_agreement":null},{"id":"W1840513678","doi":"10.1186/s12866-015-0578-2","title":"Preferential production of G-CSF by a protein-like Lactobacillus rhamnosus GR-1 secretory factor through activating TLR2-dependent signaling events without activation of JNKs","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Cegep de Saint Hyacinthe; Western University","funders":"","keywords":"TLR2; Biology; Lactobacillus rhamnosus; Chemokine; Proinflammatory cytokine; TLR4; Cytokine; Protein kinase B; Cell biology; Signal transduction; p38 mitogen-activated protein kinases; Kinase; Lipoteichoic acid; Microbiology; Immune system; MAPK/ERK pathway; Immunology; Inflammation; Lactobacillus; Biochemistry; Staphylococcus aureus","score_opus":0.049427084869286826,"score_gpt":0.24319308156516006,"score_spread":0.19376599669587324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1840513678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934176,0.002452335,0.0022712115,0.00016907723,0.000047124384,0.000048559756,0.0005351677,0.00006329395,0.0009955476],"genre_scores_gemma":[0.9930218,0.00092334533,0.0041478407,0.000109908346,0.000023688988,0.000051984855,0.0007597644,0.000014561371,0.0009471855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989796,0.000016667824,0.000009883508,0.000018568446,0.000021613543,0.00003535571],"domain_scores_gemma":[0.9999037,0.000015224381,0.000033069336,0.000010014947,0.000011926018,0.000026140322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000121879384,0.00043453998,0.0001808523,0.0001809513,0.00008121958,0.00019134334,0.00011880621,0.00020667457,0.00074258115],"category_scores_gemma":[0.0001303162,0.00007836021,0.00033166417,0.00011240343,0.00018005598,0.00012446025,0.00016055346,0.00034295704,0.0003062577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014400424,0.000012704566,0.00014375987,0.00004831885,0.0000024704977,0.0000567241,0.0000056603244,0.000020104371,0.9989249,0.000015967831,0.000030782063,0.00059461803],"study_design_scores_gemma":[0.000030280977,0.00043030066,0.004538142,0.000016463198,0.000015983805,0.0005336236,0.000033490058,0.000393864,0.99215966,0.000038697173,0.00180489,0.000004563794],"about_ca_topic_score_codex":0.00027692883,"about_ca_topic_score_gemma":0.0004009729,"teacher_disagreement_score":0.00074258115,"about_ca_system_score_codex":0.0002007789,"about_ca_system_score_gemma":0.00024261793,"threshold_uncertainty_score":0.0024842024},"labels":[],"label_agreement":null},{"id":"W1884970468","doi":"10.1186/1471-2180-5-53","title":"High-throughput metal susceptibility testing of microbial biofilms","year":2005,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Metalloid; Microtiter plate; Metal toxicity; Microorganism; Metal; Microbiology; Biology; Bacteria; Pseudomonas aeruginosa; Agar; Agar plate; Bioassay; Chemistry; Ecology; Organic chemistry; Genetics","score_opus":0.017120990502384765,"score_gpt":0.2348395807289604,"score_spread":0.21771859022657564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1884970468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.74389,0.0069492767,0.23344958,0.00059962296,0.00020323857,0.0011517553,0.0054763136,0.0027775432,0.0055025965],"genre_scores_gemma":[0.72272706,0.0061053955,0.2590863,0.00025861737,0.00011494422,0.0014709682,0.004272285,0.00019806922,0.00576629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99734914,0.00046512834,0.00019931015,0.00047835804,0.0013641963,0.00014386555],"domain_scores_gemma":[0.9989188,0.00039947426,0.000142605,0.00012266795,0.00035524607,0.00006125654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013008373,0.0008167992,0.00089260703,0.0009255141,0.00047056147,0.0008662067,0.00097514415,0.00093622174,0.0013757856],"category_scores_gemma":[0.001157671,0.00038722114,0.00075643393,0.00060685317,0.00029297566,0.0005807207,0.0011846957,0.00087190093,0.0012720659],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046190784,0.00008097332,0.0010613087,0.00019277664,0.000021073734,0.000044772372,0.00004477007,0.00023720507,0.9919178,0.000039075785,0.00017191772,0.00614209],"study_design_scores_gemma":[0.0000108400145,0.00057319127,0.008788144,0.000032439675,0.00006725062,0.00034578866,0.000079997466,0.0030049419,0.9845115,0.0001261393,0.0024206266,0.000039123563],"about_ca_topic_score_codex":0.0007715898,"about_ca_topic_score_gemma":0.0012184829,"teacher_disagreement_score":0.0013757856,"about_ca_system_score_codex":0.00032756745,"about_ca_system_score_gemma":0.00038554962,"threshold_uncertainty_score":0.006879568},"labels":[],"label_agreement":null},{"id":"W1895283065","doi":"10.1186/s12866-015-0512-7","title":"Longitudinal study of the early-life fecal and nasal microbiotas of the domestic pig","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":233,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Biology; Feces; Operational taxonomic unit; Hypervariable region; Weaning; Pyrosequencing; Population; Zoology; DNA sequencing; Microbiome; Host (biology); Bacteria; 16S ribosomal RNA; Gut flora; Physiology; Veterinary medicine; Microbiology; Genetics; Gene; Immunology; Animal science; Medicine","score_opus":0.03337324422479903,"score_gpt":0.2948171830462336,"score_spread":0.2614439388214346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1895283065","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992047,0.00012181355,0.00026482306,0.00001167564,0.000003797871,0.000009351466,0.00023166844,0.0000032433309,0.00014906716],"genre_scores_gemma":[0.9975714,0.00019720648,0.00076618325,0.00004331242,0.000008563186,0.000040083458,0.0008731328,0.000004914785,0.0004952395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999767,0.000045102533,0.000010611485,0.000086887594,0.000041106796,0.000049293074],"domain_scores_gemma":[0.99948114,0.000054403474,0.00018161577,0.00004288575,0.00011508872,0.00012489807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053402793,0.0002719129,0.00027264,0.00051407045,0.00030284084,0.0004202009,0.00019181297,0.00043206543,0.0005126819],"category_scores_gemma":[0.00059349486,0.00019789625,0.0002418585,0.00029125757,0.00023867573,0.00035103378,0.0003345834,0.00036647916,0.000194859],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031298317,0.00013974852,0.96824807,0.000036875666,0.000074526,0.00030208862,0.00038612343,0.000047140682,0.025694711,0.000022795006,0.00014680422,0.004588232],"study_design_scores_gemma":[0.000001434599,0.0003034244,0.99863344,0.0000071613276,0.000018135905,0.00017909965,0.00015618518,0.00007877607,0.0003957083,0.0000081865,0.00021552034,0.0000029564549],"about_ca_topic_score_codex":0.0014693561,"about_ca_topic_score_gemma":0.0028360512,"teacher_disagreement_score":0.0014693561,"about_ca_system_score_codex":0.00023713891,"about_ca_system_score_gemma":0.00023653691,"threshold_uncertainty_score":0.0029216409},"labels":[],"label_agreement":null},{"id":"W1905597718","doi":"10.1186/1471-2180-6-104","title":"Identification of potential CepR regulated genes using a cep box motif-based search of the Burkholderia cenocepacia genome","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Burkholderia cenocepacia; Genetics; Transposon mutagenesis; Promoter; Gene; Transposable element; Swarming motility; Genome; Virulence; Gene expression; Quorum sensing","score_opus":0.010656225013831505,"score_gpt":0.22270083861845907,"score_spread":0.21204461360462756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1905597718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96873796,0.0013904964,0.018419173,0.00013439001,0.000023945104,0.00025181024,0.009099274,0.0006321206,0.0013108691],"genre_scores_gemma":[0.88001007,0.0006943625,0.095861286,0.00012911459,0.000017884146,0.00021999901,0.021516673,0.000130866,0.0014197784],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984396,0.000015957821,0.00001397704,0.00006119218,0.000043335636,0.000021484228],"domain_scores_gemma":[0.9997578,0.000062513915,0.00008354992,0.000014550834,0.000039559793,0.000041947806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021119697,0.0005563113,0.0005445362,0.0010639633,0.00021830949,0.00033777987,0.00032309286,0.00033036334,0.0016327299],"category_scores_gemma":[0.00045311052,0.00014460334,0.0005273183,0.00086246734,0.000100450045,0.00015878711,0.00026255354,0.00036715227,0.00089835527],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005004586,0.00015982517,0.00864381,0.00037167306,0.000043897595,0.000656528,0.00008284673,0.00059673714,0.9753665,0.00008591659,0.00027377138,0.013217993],"study_design_scores_gemma":[0.00019824316,0.0017735474,0.2255642,0.00018006885,0.00054810446,0.007445354,0.00052699255,0.03594523,0.7086006,0.00044344435,0.018679345,0.00009491042],"about_ca_topic_score_codex":0.0008218043,"about_ca_topic_score_gemma":0.0016487915,"teacher_disagreement_score":0.0016327299,"about_ca_system_score_codex":0.00031381563,"about_ca_system_score_gemma":0.00048260542,"threshold_uncertainty_score":0.005461991},"labels":[],"label_agreement":null},{"id":"W1916674083","doi":"10.1186/s12866-015-0475-8","title":"Developmental succession of the microbiome of Culex mosquitoes","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; University of California, Riverside; Florida Department of Agriculture and Consumer Services","keywords":"Biology; Microbiome; Larva; Culex; Instar; Pupa; Zoology; Culex pipiens; Gammaproteobacteria; Ecology; 16S ribosomal RNA; Bacteria","score_opus":0.03810659426673388,"score_gpt":0.21761259685423406,"score_spread":0.17950600258750019,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1916674083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975073,0.00042533418,0.00015924528,0.000023302911,0.000004586861,0.000022007507,0.0012026967,0.0000082223105,0.00064740283],"genre_scores_gemma":[0.9951739,0.0006762884,0.0008539251,0.00007973456,0.0000074906575,0.000044891596,0.00218156,0.000005848927,0.00097648107],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999175,0.000009677764,0.0000054556285,0.000029228191,0.000017753699,0.000020355123],"domain_scores_gemma":[0.9998394,0.000014739107,0.000041514788,0.000004593439,0.000059432376,0.000040283434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015063763,0.00024118517,0.00018206898,0.00041966475,0.00023584669,0.00042792893,0.00010989291,0.00014641174,0.0012538299],"category_scores_gemma":[0.00027354114,0.00011175321,0.00014917436,0.00021872953,0.00012111117,0.0002646097,0.00026542533,0.00025099574,0.0002554315],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082809885,0.0000930212,0.21624775,0.00031447335,0.000074268,0.00033975806,0.00067592354,0.0001746716,0.7666033,0.000101363345,0.0005933626,0.0139538925],"study_design_scores_gemma":[0.0000036574384,0.00031316085,0.98508424,0.000017455886,0.00002404322,0.00021444268,0.00052947656,0.00015784924,0.012730495,0.000025738313,0.00089155184,0.000007935315],"about_ca_topic_score_codex":0.0024851996,"about_ca_topic_score_gemma":0.0032905703,"teacher_disagreement_score":0.0024851996,"about_ca_system_score_codex":0.00025603548,"about_ca_system_score_gemma":0.00020543308,"threshold_uncertainty_score":0.004941523},"labels":[],"label_agreement":null},{"id":"W1921698342","doi":"10.1186/s12866-015-0557-7","title":"The development and application of a molecular community profiling strategy to identify polymicrobial bacterial DNA in the whole blood of septic patients","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Calgary","funders":"Alberta Innovates - Health Solutions","keywords":"Biology; Sepsis; DNA extraction; Microbiology; Whole blood; Blood culture; DNA profiling; Bacteria; DNA; Lysis; Immunology; Polymerase chain reaction; Gene; Genetics; Antibiotics","score_opus":0.026159123696971535,"score_gpt":0.28275292055850515,"score_spread":0.2565937968615336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1921698342","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7946322,0.0015650366,0.1990501,0.0004281411,0.000084196596,0.00094313384,0.0015280714,0.0004140106,0.0013550478],"genre_scores_gemma":[0.7027244,0.0010095686,0.29223433,0.00037290144,0.000045943776,0.000799042,0.0016807499,0.00004892397,0.0010842758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991679,0.00021882182,0.000055870412,0.00021247646,0.00027789752,0.00006700767],"domain_scores_gemma":[0.9994093,0.0001280896,0.00012577671,0.000049743347,0.00021276974,0.00007424329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077982486,0.0005182479,0.00035735642,0.0010095168,0.00019300843,0.00062401243,0.0004567576,0.00060941215,0.0004989281],"category_scores_gemma":[0.0013269546,0.00025918838,0.00030803427,0.00045771693,0.00027517232,0.0003006063,0.00057032605,0.00058571826,0.0005199847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012486883,0.00008536796,0.0063281776,0.00014649676,0.000017468348,0.000057476453,0.000098275355,0.00026629562,0.9710487,0.00006420222,0.00008730702,0.021675378],"study_design_scores_gemma":[0.00004102501,0.001984897,0.044227187,0.00008898435,0.00007800124,0.0013557513,0.00025688432,0.013077709,0.93445694,0.0002737716,0.0041140397,0.00004481328],"about_ca_topic_score_codex":0.00031126148,"about_ca_topic_score_gemma":0.00044980354,"teacher_disagreement_score":0.0010095168,"about_ca_system_score_codex":0.00016973332,"about_ca_system_score_gemma":0.00048473722,"threshold_uncertainty_score":0.0041241646},"labels":[],"label_agreement":null},{"id":"W1931209800","doi":"10.1186/s12866-015-0534-1","title":"Development of a bead-based Luminex assay using lipopolysaccharide specific monoclonal antibodies to detect biological threats from Brucella species","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Robert Koch Institut; University of Alberta; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology","keywords":"Brucella; Biology; Microbiology; Monoclonal antibody; Brucella melitensis; Antigen; Immunoassay; Brucellosis; Hybridoma technology; Antibody; Lipopolysaccharide; Brucellaceae; Virology; Immunology","score_opus":0.3143939227115897,"score_gpt":0.3679588956853452,"score_spread":0.053564972973755454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1931209800","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4215338,0.002468576,0.5664191,0.00049292104,0.00034443085,0.0008545868,0.0007904443,0.0018226804,0.005273487],"genre_scores_gemma":[0.52739334,0.0016953676,0.45918688,0.0005160877,0.00009007053,0.0016767981,0.0025884362,0.0001242287,0.006728767],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818134,0.0004434607,0.00018515253,0.0004421805,0.0005767819,0.00017117473],"domain_scores_gemma":[0.9991798,0.00025541164,0.00013673534,0.00011038993,0.0002381852,0.00007943305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019809043,0.0013625044,0.00064208155,0.0010855141,0.00030043814,0.0011046013,0.0016352525,0.0014780873,0.0015165616],"category_scores_gemma":[0.0013928708,0.00059370475,0.00082596514,0.00057447207,0.00044993905,0.00051329605,0.00090644346,0.0013329922,0.001749697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010459029,0.0001848192,0.00091348466,0.00013962011,0.00003696962,0.00003847673,0.000041343403,0.00050009595,0.9909847,0.00024067573,0.00016096068,0.006654348],"study_design_scores_gemma":[0.00002927229,0.00058360206,0.00284169,0.000030758274,0.000057014222,0.00027102526,0.000023737433,0.01127476,0.9812377,0.00014006803,0.0034853062,0.000025192188],"about_ca_topic_score_codex":0.00025209898,"about_ca_topic_score_gemma":0.00028214755,"teacher_disagreement_score":0.0019809043,"about_ca_system_score_codex":0.0005137581,"about_ca_system_score_gemma":0.0003592892,"threshold_uncertainty_score":0.010476112},"labels":[],"label_agreement":null},{"id":"W1943178454","doi":"10.1186/s12866-015-0532-3","title":"Secretome profiling of Cryptococcus neoformans reveals regulation of a subset of virulence-associated proteins and potential biomarkers by protein kinase A","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Biology; Virulence; Proteomics; Secretory protein; Quantitative proteomics; Extracellular; Protein kinase A; Secretion; Protein subunit; Signal transduction; Microbiology; Biochemistry; Kinase; Gene","score_opus":0.020423285529759885,"score_gpt":0.25480308684413727,"score_spread":0.23437980131437738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1943178454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962655,0.00058974687,0.0011274747,0.000058643593,0.000010181461,0.000030737665,0.0015297717,0.000028050936,0.00035992704],"genre_scores_gemma":[0.99144393,0.0007978453,0.0040349537,0.000110441535,0.00001256648,0.000051896906,0.0027041784,0.000016510576,0.0008276956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990547,0.000007134353,0.0000064001465,0.000023907472,0.000035472494,0.000021530694],"domain_scores_gemma":[0.9998715,0.000021302258,0.000036965757,0.000009364779,0.000032683947,0.000028211218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013229063,0.00040112736,0.00026974548,0.00063498516,0.00017368204,0.00026592813,0.00012018884,0.00027408754,0.0003444318],"category_scores_gemma":[0.00016963673,0.00008303036,0.0002608046,0.00045493757,0.00013373845,0.00016004297,0.000181671,0.0003107207,0.0001687496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017275402,0.000025616911,0.0020437494,0.00003230178,0.000007745673,0.000069075286,0.000015811076,0.000060710183,0.99628496,0.000011759557,0.000031460066,0.0012440159],"study_design_scores_gemma":[0.000020216447,0.00036121317,0.18666439,0.000017561071,0.00006923932,0.0011115139,0.00013463276,0.004739699,0.80519664,0.00013215217,0.0015377926,0.000014928967],"about_ca_topic_score_codex":0.0007947902,"about_ca_topic_score_gemma":0.0008248884,"teacher_disagreement_score":0.0007947902,"about_ca_system_score_codex":0.0002834617,"about_ca_system_score_gemma":0.00015172745,"threshold_uncertainty_score":0.0020567179},"labels":[],"label_agreement":null},{"id":"W1966317540","doi":"10.1186/1471-2180-13-115","title":"Extracellular DNA-induced antimicrobial peptide resistance in Salmonella enterica serovar Typhimurium","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences Centre; University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Biofilm; Operon; Microbiology; Salmonella enterica; Biology; Extracellular; Antimicrobial; Antimicrobial peptides; DNA; Salmonella; Pseudomonas aeruginosa; Bacteria; Cell biology; Gene; Biochemistry; Escherichia coli; Genetics","score_opus":0.022888739477470395,"score_gpt":0.21371490405127014,"score_spread":0.19082616457379975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966317540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951174,0.0011068073,0.0018820282,0.000092972274,0.000032970573,0.000032802374,0.00052253314,0.00013351554,0.0010789097],"genre_scores_gemma":[0.9922995,0.000451006,0.0035117015,0.000081384285,0.000012430877,0.000044500088,0.0014765264,0.0000331688,0.0020898045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997814,0.0000376972,0.00002068378,0.00004655768,0.00006679748,0.00004685858],"domain_scores_gemma":[0.999782,0.000039923918,0.000071525494,0.000021811922,0.000043430093,0.000041373914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013840366,0.00066458003,0.00023905102,0.00036926896,0.00009670408,0.00025480325,0.00016598085,0.00035804338,0.0009960268],"category_scores_gemma":[0.00015020504,0.00016746022,0.00040921543,0.00013630732,0.00022305537,0.00011635224,0.00044054873,0.00041730783,0.00052282197],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029746849,0.000014753774,0.00010813508,0.00003377227,0.0000021063775,0.00002111664,0.0000050861017,0.000016146914,0.999416,0.000010340846,0.000009802007,0.00033288673],"study_design_scores_gemma":[0.000026204374,0.0007741291,0.0113244215,0.00001843047,0.00002679087,0.00040273071,0.000056451638,0.00066090643,0.9852359,0.000026557069,0.001437263,0.000010162792],"about_ca_topic_score_codex":0.0008405261,"about_ca_topic_score_gemma":0.00088497647,"teacher_disagreement_score":0.0009960268,"about_ca_system_score_codex":0.00032177198,"about_ca_system_score_gemma":0.0001909493,"threshold_uncertainty_score":0.0033320189},"labels":[],"label_agreement":null},{"id":"W1969143507","doi":"10.1186/1471-2180-10-33","title":"Staphylococcus aureus sigma B-dependent emergence of small-colony variants and biofilm production following exposure to Pseudomonas aeruginosa 4-hydroxy-2-heptylquinoline-N- oxide","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":163,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Armand Frappier Museum; Université de Sherbrooke","funders":"","keywords":"Biofilm; Staphylococcus aureus; Pseudomonas aeruginosa; Microbiology; Quorum sensing; Biology; Mutant; Sigma factor; Leukocidin; Methicillin-resistant Staphylococcus aureus; Gene; Gene expression; Bacteria; Genetics; Promoter","score_opus":0.009647708225489066,"score_gpt":0.2265551706852866,"score_spread":0.21690746245979753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969143507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998533,0.00043218108,0.0004230377,0.00003781493,0.000012386611,0.00002620813,0.00020170436,0.000012178386,0.00032147043],"genre_scores_gemma":[0.9980094,0.00018340308,0.00065379427,0.00004173968,0.000007230816,0.000042858843,0.00041938107,0.000003948049,0.00063828804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999818,0.000037460573,0.000017364257,0.000029542496,0.000057080037,0.000040525905],"domain_scores_gemma":[0.9997652,0.000052554344,0.00005931156,0.000020640566,0.000048447666,0.000053692278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014751614,0.0002467873,0.00023265755,0.00016377111,0.000076315555,0.00018557206,0.00010475264,0.00022949513,0.0010514191],"category_scores_gemma":[0.00021128761,0.000114575654,0.00023301963,0.000109309534,0.0001632496,0.000102734884,0.00019634115,0.0003736323,0.0002132638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017395188,0.00004452019,0.000509111,0.000017104405,0.0000031088211,0.000038208444,0.000021350104,0.000010986247,0.9988418,0.0000074470486,0.000015307758,0.00031709354],"study_design_scores_gemma":[0.00002828735,0.0020156312,0.08026158,0.00001557983,0.000019456133,0.00039030175,0.00017945081,0.0009428788,0.9154795,0.000039349427,0.0006159578,0.000012102243],"about_ca_topic_score_codex":0.000775394,"about_ca_topic_score_gemma":0.0007173291,"teacher_disagreement_score":0.0010514191,"about_ca_system_score_codex":0.000122281,"about_ca_system_score_gemma":0.00011950168,"threshold_uncertainty_score":0.0035173893},"labels":[],"label_agreement":null},{"id":"W1969309886","doi":"10.1186/1471-2180-12-295","title":"Linking genome content to biofuel production yields: a meta-analysis of major catabolic pathways among select H2and ethanol-producing bacteria","year":2012,"lang":"en","type":"review","venue":"BMC Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Ethanol fuel; Biology; Metabolic engineering; Alcohol dehydrogenase; Biochemistry; Biofuel; Clostridium thermocellum; Fermentation; Thermotoga maritima; Cellulosic ethanol; Thermophile; Pyruvate decarboxylase; Comparative genomics; Metabolic pathway; Hyperthermophile; Ethanol; Biotechnology; Gene; Archaea; Genome; Enzyme; Cellulase; Cellulose; Genomics; Escherichia coli","score_opus":0.15531690191312233,"score_gpt":0.2741586732626261,"score_spread":0.11884177134950377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969309886","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875924,0.0018658966,0.0068000397,0.00008955893,0.000007094116,0.000040299983,0.0030543746,0.00012951519,0.00042091138],"genre_scores_gemma":[0.97902393,0.0007695677,0.01460805,0.000056928246,0.000006788238,0.00006702122,0.005259723,0.00006498348,0.00014300436],"study_design_codex":"bench_or_experimental","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99959165,0.00009132684,0.000019975876,0.00019066506,0.000051124636,0.000055207318],"domain_scores_gemma":[0.99945515,0.00030418302,0.000075484124,0.00006929046,0.000049072387,0.000046758396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010960564,0.0010025869,0.000946254,0.0018080754,0.00033557016,0.00129911,0.00059873663,0.0006103107,0.0006472018],"category_scores_gemma":[0.0011579869,0.00034346944,0.0028185854,0.0023028683,0.00024375683,0.00054092775,0.0007102912,0.000672998,0.00015007863],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026848908,0.0006372104,0.22540487,0.0015655871,0.009283694,0.00039129,0.0006310519,0.038682006,0.65840054,0.00051672646,0.00027497395,0.061527133],"study_design_scores_gemma":[0.00017975939,0.0023415894,0.7581414,0.00024276371,0.014143549,0.0008174148,0.001277487,0.13760531,0.078053795,0.001849904,0.0051551466,0.00019185428],"about_ca_topic_score_codex":0.0019467504,"about_ca_topic_score_gemma":0.0020038912,"teacher_disagreement_score":0.0019467504,"about_ca_system_score_codex":0.00083050743,"about_ca_system_score_gemma":0.000665421,"threshold_uncertainty_score":0.0060257316},"labels":[],"label_agreement":null},{"id":"W1969515910","doi":"10.1186/1471-2180-12-292","title":"Updated 16S rRNA-RFLP method for the identification of all currently characterised Arcobacter spp","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Queen's University; Universiteit Gent; Ministerio de Ciencia e Innovación; Universitat Rovira i Virgili; Queen's University Belfast","keywords":"Arcobacter; Restriction fragment length polymorphism; Biology; 16S ribosomal RNA; Restriction enzyme; Terminal restriction fragment length polymorphism; Microbiology; Genetics; Polymerase chain reaction; Bacteria; Gene","score_opus":0.05655368272147672,"score_gpt":0.30644469956360565,"score_spread":0.24989101684212894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969515910","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4478526,0.025950935,0.49919948,0.0016840711,0.001820743,0.0019574235,0.0055368566,0.0033151067,0.012682798],"genre_scores_gemma":[0.16570136,0.007470306,0.8073077,0.000544577,0.00024758186,0.0013333609,0.008724166,0.00036984135,0.0083011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954631,0.0010640009,0.00083020376,0.00083808636,0.0015699252,0.00023470352],"domain_scores_gemma":[0.99578935,0.0007856105,0.0006518424,0.00053542573,0.002016402,0.00022146951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024022565,0.0016393516,0.0009307177,0.0038914795,0.000683981,0.00095405424,0.001354321,0.0015479274,0.0033237291],"category_scores_gemma":[0.004898335,0.00072049396,0.0007883429,0.0015943114,0.0005047185,0.0012928457,0.0012288444,0.0017391831,0.0050624283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026123849,0.0002747577,0.013117369,0.0009233284,0.00006969074,0.00069369574,0.0006899383,0.0001960097,0.8910489,0.00025672006,0.001258319,0.09121009],"study_design_scores_gemma":[0.000085333166,0.0017246045,0.06324588,0.0007928703,0.0004825598,0.011874701,0.00096534134,0.0046795434,0.8208291,0.0008088113,0.09427619,0.00023510517],"about_ca_topic_score_codex":0.00054197235,"about_ca_topic_score_gemma":0.0014126108,"teacher_disagreement_score":0.0038914795,"about_ca_system_score_codex":0.00027700912,"about_ca_system_score_gemma":0.00062191364,"threshold_uncertainty_score":0.012704551},"labels":[],"label_agreement":null},{"id":"W1969699737","doi":"10.1186/1471-2180-12-92","title":"Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; World Health Organization","keywords":"Biology; Salmonella enteritidis; Serotype; Microbiology; Salmonella enterica; Salmonella; Parasitology; Feces; Veterinary medicine; Virology; Bacteria; Zoology; Medicine","score_opus":0.018905163540822514,"score_gpt":0.205342247407354,"score_spread":0.18643708386653146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969699737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992756,0.000106023515,0.00013535199,0.0000102978565,0.000002256907,0.000012484161,0.00029044753,0.0000033489014,0.00016421604],"genre_scores_gemma":[0.9981078,0.0002194027,0.00043183245,0.000030982035,0.0000051866073,0.00001776256,0.0009964091,0.00000394533,0.00018652991],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995857,0.000074920135,0.000089567664,0.000083292114,0.00010448328,0.00006195603],"domain_scores_gemma":[0.99878997,0.00022033736,0.00042716405,0.000053896187,0.00027240565,0.00023624954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003689127,0.00036448808,0.00023695901,0.001120532,0.00032606098,0.00067779346,0.00017933224,0.00024024215,0.0005670308],"category_scores_gemma":[0.0010844175,0.00021361039,0.00026677758,0.000980521,0.00024100451,0.00021837924,0.00038829996,0.00026186928,0.00020756008],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036795062,0.00011170075,0.9377451,0.00019657654,0.000047665802,0.0021353746,0.0011970829,0.0001281133,0.051664058,0.000013694758,0.00011951532,0.006273127],"study_design_scores_gemma":[0.000011368475,0.0005541958,0.97844064,0.000045854995,0.000047473884,0.005912296,0.0018509539,0.00033131102,0.012181337,0.000011470014,0.0006011334,0.000011923709],"about_ca_topic_score_codex":0.0035249626,"about_ca_topic_score_gemma":0.002820037,"teacher_disagreement_score":0.0035249626,"about_ca_system_score_codex":0.00019451226,"about_ca_system_score_gemma":0.00034205383,"threshold_uncertainty_score":0.00700891},"labels":[],"label_agreement":null},{"id":"W1970162878","doi":"10.1186/1471-2180-11-199","title":"Mutation of L-2,3-diaminopropionic acid synthase genes blocks staphyloferrin B synthesis in Staphylococcus aureus","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Biology; Biochemistry; Biosynthesis; Amino acid; Enzyme; Mutant; Operon; ATP synthase; Staphylococcus aureus; Gene; Bacteria; Genetics","score_opus":0.016178842249058707,"score_gpt":0.21732738776989022,"score_spread":0.2011485455208315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970162878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99452716,0.00041449454,0.0038799671,0.000053370743,0.000025980231,0.000038119877,0.00023331936,0.0001253821,0.0007022652],"genre_scores_gemma":[0.99544585,0.00025550352,0.0028395334,0.000025596164,0.0000071935174,0.000034321652,0.00032061076,0.000068638175,0.0010029029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997676,0.00004621535,0.000045440484,0.000039983162,0.000068664594,0.000032152297],"domain_scores_gemma":[0.9994598,0.0001734752,0.00018074694,0.000042214975,0.000032141965,0.00011160288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013900385,0.00069454004,0.00029485533,0.0003247896,0.00012413252,0.00028839492,0.00035711445,0.00043041265,0.0010330889],"category_scores_gemma":[0.00033160913,0.00021330347,0.00035409862,0.00016938895,0.00031728274,0.00014561479,0.00030750933,0.00043341328,0.00069260073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046200897,0.000020578684,0.00011182511,0.000013917436,0.0000045514407,0.00006212939,0.000009826088,0.000072832634,0.99928814,0.00003259794,0.000005886363,0.0003315434],"study_design_scores_gemma":[0.000018867355,0.00021672137,0.0030421736,0.000014111146,0.000019242949,0.00037558665,0.000031399162,0.0018318201,0.9936888,0.000027788787,0.0007251362,0.000008373194],"about_ca_topic_score_codex":0.002388252,"about_ca_topic_score_gemma":0.0014949875,"teacher_disagreement_score":0.002388252,"about_ca_system_score_codex":0.00046927814,"about_ca_system_score_gemma":0.00040091423,"threshold_uncertainty_score":0.004748702},"labels":[],"label_agreement":null},{"id":"W1971414139","doi":"10.1186/1471-2180-11-253","title":"Integration of a laterally acquired gene into a cell network important for growth in a strain of Vibrio rotiferianus","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Health and Medical Research Council; Medical Research Council","keywords":"Biology; Mobile genetic elements; Horizontal gene transfer; Gene; Integron; Genetics; Genome; Vibrio; Adaptation (eye); Vibrio Infections; Vibrio vulnificus; Computational biology; Bacteria; Plasmid; Virulence","score_opus":0.013311706044315095,"score_gpt":0.21117578610562798,"score_spread":0.1978640800613129,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971414139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988532,0.00012169349,0.00051684945,0.000024115623,0.000009130634,0.000015743044,0.00010607658,0.000026919914,0.00032624407],"genre_scores_gemma":[0.99642915,0.00010412403,0.0013789946,0.000014060472,0.000003822632,0.000022326441,0.00060282403,0.000020596111,0.0014241979],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977547,0.000021933243,0.000023380902,0.000050378596,0.00008540822,0.000043421693],"domain_scores_gemma":[0.9997961,0.00004407742,0.00006989278,0.00002718187,0.000021749684,0.000041098272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117150914,0.00048751244,0.00028231385,0.00022466664,0.00014693227,0.000295475,0.0003286861,0.00032469176,0.0009599179],"category_scores_gemma":[0.00021165659,0.000114928,0.00024196091,0.00018015387,0.00022727641,0.00018418982,0.00047987895,0.0005803334,0.00026888886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004909552,0.000044355544,0.0004066943,0.000019005716,0.0000025716704,0.000052244366,0.00001602814,0.00004036928,0.99894553,0.000018664758,0.0000060358434,0.0003995065],"study_design_scores_gemma":[0.00001944929,0.001605374,0.017062735,0.000012020542,0.000028118524,0.0005295714,0.00015308589,0.00089927035,0.9789336,0.000028057477,0.0007193291,0.000009332717],"about_ca_topic_score_codex":0.0016933598,"about_ca_topic_score_gemma":0.0016203384,"teacher_disagreement_score":0.0016933598,"about_ca_system_score_codex":0.00038608714,"about_ca_system_score_gemma":0.00031240904,"threshold_uncertainty_score":0.0033670068},"labels":[],"label_agreement":null},{"id":"W1972491005","doi":"10.1186/s12866-015-0364-1","title":"Development and pyrosequencing analysis of an in-vitro oral biofilm model","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Engineering and Physical Sciences Research Council; Symrise; Queen Mary University of London","keywords":"Biofilm; Veillonella; Biology; Microbiology; Pyrosequencing; Saliva; Dental plaque; Prevotella intermedia; Fusobacterium nucleatum; Prevotella; Bacteria; Streptococcus; Genetics; Gene","score_opus":0.08455404312182681,"score_gpt":0.33423803439162536,"score_spread":0.24968399126979857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972491005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8647646,0.0017926289,0.12489819,0.00017328977,0.00010274602,0.00096237625,0.005105817,0.00040224812,0.001798086],"genre_scores_gemma":[0.725389,0.0021300325,0.26045343,0.0001336322,0.000031778865,0.0018485115,0.0075076674,0.00012634452,0.0023796633],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9987888,0.0002544864,0.00012210425,0.00027724187,0.00047202766,0.000085385385],"domain_scores_gemma":[0.9993505,0.000195963,0.00014567791,0.00008852435,0.00018038158,0.00003894149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015961925,0.0007521621,0.00079379336,0.0007122196,0.00041211615,0.00086360826,0.0006645436,0.00086433144,0.00055852707],"category_scores_gemma":[0.0009598022,0.0004345897,0.00088493386,0.0006316572,0.00033806756,0.00032386166,0.00067587476,0.0007685057,0.0006028883],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077144396,0.00008059413,0.00085436023,0.000093173425,0.00001513174,0.000038294933,0.000054187865,0.0006213769,0.996012,0.00005791043,0.00003994915,0.0020560315],"study_design_scores_gemma":[0.000025398109,0.001358367,0.014213602,0.00004385103,0.000108305176,0.0003067457,0.0001300365,0.017268885,0.9626151,0.00026022297,0.0036171721,0.00005230847],"about_ca_topic_score_codex":0.0014280683,"about_ca_topic_score_gemma":0.0024580644,"teacher_disagreement_score":0.0015961925,"about_ca_system_score_codex":0.00036482094,"about_ca_system_score_gemma":0.00050360867,"threshold_uncertainty_score":0.008441627},"labels":[],"label_agreement":null},{"id":"W1972665156","doi":"10.1186/1471-2180-11-251","title":"The bacteriophage WORiC is the active phage element in wRi of Drosophila simulans and represents a conserved class of WO phages","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University of Edmonton; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Wolbachia; Biology; Prophage; Lytic cycle; Genome; Genetics; Cytoplasmic incompatibility; Horizontal gene transfer; Gene; Extrachromosomal DNA; Bacteriophage; Drosophila melanogaster; Virus; Escherichia coli","score_opus":0.034791753990312944,"score_gpt":0.22728028156833316,"score_spread":0.1924885275780202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972665156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99152035,0.00094528764,0.004569513,0.000028412893,0.000017007827,0.000054136042,0.0012031351,0.00011107941,0.0015510074],"genre_scores_gemma":[0.987435,0.0004328947,0.005879594,0.000039425115,0.000008104407,0.000033126566,0.0036404317,0.000026026546,0.0025054205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986494,0.0000076456645,0.000008877774,0.00006034135,0.000041051902,0.000017284],"domain_scores_gemma":[0.9998702,0.000013466293,0.0000648069,0.000008169107,0.000013563215,0.000029745841],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094168965,0.00050863577,0.0001483863,0.00046159903,0.00018671971,0.00023342633,0.00018492839,0.00021670783,0.0008609244],"category_scores_gemma":[0.0001169111,0.00016715743,0.00021544597,0.00020236045,0.00028986167,0.00011710345,0.00023109869,0.00039020582,0.00037198866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000696956,0.000014166475,0.0022958703,0.00008180983,0.0000043976274,0.00004221793,0.000023531857,0.000043898737,0.9945491,0.00009998069,0.00002692137,0.0027484833],"study_design_scores_gemma":[0.000024696075,0.0008463118,0.13268946,0.000058335234,0.000047173417,0.0013667262,0.00014870364,0.00086166745,0.8520753,0.0001654791,0.011700078,0.000016071683],"about_ca_topic_score_codex":0.00089463656,"about_ca_topic_score_gemma":0.0009996712,"teacher_disagreement_score":0.00089463656,"about_ca_system_score_codex":0.00038027042,"about_ca_system_score_gemma":0.0002109639,"threshold_uncertainty_score":0.0028800964},"labels":[],"label_agreement":null},{"id":"W1973802077","doi":"10.1186/1471-2180-10-214","title":"RNA Interference inhibits Hepatitis B Virus of different genotypes in Vitro and in Vivo","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University","keywords":"HBcAg; Biology; HBeAg; Hepatitis B virus; HBsAg; Small hairpin RNA; RNA interference; Virology; RNA; Plasmid; Small interfering RNA; Transfection; Molecular biology; Hepatitis B; Virus; DNA; Cell culture; Gene; Genetics","score_opus":0.006982709227795472,"score_gpt":0.22043923248274994,"score_spread":0.21345652325495446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973802077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98383325,0.0043651457,0.00674939,0.00011801494,0.000055843208,0.000092548245,0.00037736283,0.00023425907,0.004174236],"genre_scores_gemma":[0.9846943,0.002972077,0.0065181516,0.00008741228,0.000032968182,0.00013820038,0.0014037939,0.00006509318,0.004087951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979717,0.00004817654,0.00002004757,0.000030161511,0.000066793444,0.000037759244],"domain_scores_gemma":[0.99985313,0.000050736806,0.000033381853,0.000016431619,0.000024905237,0.00002133586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026337465,0.00041142074,0.00023802824,0.0003281926,0.00012666552,0.00020044627,0.00017674497,0.00022859842,0.0014810882],"category_scores_gemma":[0.00020440298,0.00013264747,0.00023964391,0.00011325793,0.00017049926,0.00010005771,0.000118949836,0.00034060952,0.0005889062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064744745,0.000040082676,0.00008589703,0.00004076676,0.0000063353987,0.000011476839,0.000008479835,0.000052749067,0.99774593,0.000046127618,0.00004984793,0.0018475249],"study_design_scores_gemma":[0.00001689888,0.00068938395,0.00097000937,0.0000046781684,0.000020127754,0.00008385622,0.000005049606,0.00039369432,0.9963722,0.000017911525,0.0014242369,0.000002093729],"about_ca_topic_score_codex":0.00032495713,"about_ca_topic_score_gemma":0.0005475072,"teacher_disagreement_score":0.0014810882,"about_ca_system_score_codex":0.00021567552,"about_ca_system_score_gemma":0.00015917487,"threshold_uncertainty_score":0.0049547553},"labels":[],"label_agreement":null},{"id":"W1973859476","doi":"10.1186/1471-2180-14-63","title":"Prevalence of Staphylococcus aureus protein A (spa) mutants in the community and hospitals in Oxfordshire","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Medical Research Council; National Institute for Health and Care Research; United Kingdom Clinical Research Collaboration; Wellcome Trust","keywords":"Biology; Staphylococcus aureus; Typing; Genetics; Multilocus sequence typing; Virulence; Gene; Genotype; Carriage; Microbiology; Staphylococcal infections; Virology; Bacteria; Medicine","score_opus":0.01657100625816669,"score_gpt":0.2702762133137725,"score_spread":0.2537052070556058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973859476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99945194,0.00017228807,0.0000157382,0.000025967416,0.000003122231,0.0000048114753,0.00017067202,0.000001531377,0.00015388186],"genre_scores_gemma":[0.9996326,0.000094098534,0.000034845027,0.000024022496,0.0000036081456,0.0000041533735,0.00011760499,6.902645e-7,0.0000884592],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987949,0.0001964094,0.00021196938,0.00030209552,0.00017933986,0.00031530918],"domain_scores_gemma":[0.99622357,0.00044972368,0.001628469,0.00009894496,0.0005366051,0.0010627608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004820417,0.00035851472,0.00034716836,0.0018666222,0.0005458057,0.00086588366,0.0005615189,0.00067164126,0.002480636],"category_scores_gemma":[0.001716104,0.00035906714,0.0002221885,0.001265419,0.000843393,0.00043593883,0.0011082375,0.00029811388,0.00020585406],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006595355,0.0000140922675,0.9975563,0.000042534837,0.00001448944,0.00032941415,0.00043217957,0.0000151147315,0.0006854488,0.000011719961,0.00007617075,0.00075647427],"study_design_scores_gemma":[0.0000040396435,0.00007166349,0.9985014,0.000014496697,0.0000060174384,0.00043235268,0.00083581556,0.000022392278,0.000041013827,0.0000026665705,0.00006420492,0.000003930014],"about_ca_topic_score_codex":0.075235054,"about_ca_topic_score_gemma":0.10626843,"teacher_disagreement_score":0.075235054,"about_ca_system_score_codex":0.0013471659,"about_ca_system_score_gemma":0.00091848016,"threshold_uncertainty_score":0.1495943},"labels":[],"label_agreement":null},{"id":"W1974516796","doi":"10.1186/1471-2180-8-123","title":"Morphology and molecular phylogeny of a marine interstitial tetraflagellate with putative endosymbionts: Auranticordis quadriverberis n. gen. et sp. (Cercozoa)","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Phylogenetics; Pyrenoid; Protist; Flagellum; Incertae sedis; Phylogenetic tree; Botany; Evolutionary biology; Zoology; Taxonomy (biology); Gene; Chloroplast; Genetics","score_opus":0.009893406376466865,"score_gpt":0.21532168048316574,"score_spread":0.2054282741066989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974516796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981673,0.0002833065,0.00035678796,0.000014514667,0.000004799351,0.000008956027,0.00026173747,0.0000115537405,0.0008910721],"genre_scores_gemma":[0.997886,0.00010854387,0.0010349686,0.000012144142,0.0000039383185,0.000008114761,0.000587721,0.0000037288532,0.0003548798],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999256,0.0000045795005,0.000009945979,0.000033854456,0.000014088056,0.000012020895],"domain_scores_gemma":[0.9997849,0.000025636884,0.00008566958,0.000017261711,0.000048699087,0.00003777661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006319701,0.00016518589,0.00016597436,0.0006866892,0.00034833234,0.00028845982,0.0002143479,0.00029278046,0.00054890127],"category_scores_gemma":[0.00017362821,0.00010670537,0.00017214542,0.0004662617,0.00026662732,0.00016885856,0.00028160764,0.00014015487,0.00031723708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024560676,0.000034262775,0.2670676,0.0001315318,0.000033930777,0.00080654706,0.0007703147,0.00015343243,0.7130293,0.00008467568,0.000100568956,0.017542206],"study_design_scores_gemma":[0.000003401162,0.00011156241,0.98894286,0.000011044869,0.000022312868,0.002216609,0.00033616577,0.00029728934,0.0064867213,0.000023405413,0.0015431561,0.0000055206206],"about_ca_topic_score_codex":0.0019365085,"about_ca_topic_score_gemma":0.002238346,"teacher_disagreement_score":0.0019365085,"about_ca_system_score_codex":0.00015175552,"about_ca_system_score_gemma":0.00016474185,"threshold_uncertainty_score":0.00385046},"labels":[],"label_agreement":null},{"id":"W1974885234","doi":"10.1186/1471-2180-13-77","title":"TypA is involved in virulence, antimicrobial resistance and biofilm formation in Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; Karlsruhe Institute of Technology","keywords":"Virulence; Pseudomonas aeruginosa; Microbiology; Biology; Biofilm; Antibiotic resistance; Mutant; Pathogen; Tetracycline; Antibiotics; Type three secretion system; Antimicrobial; Human pathogen; Bacteria; Gene; Genetics","score_opus":0.009455417864350966,"score_gpt":0.2117980589090862,"score_spread":0.20234264104473523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974885234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904235,0.004564192,0.0025356794,0.0002267642,0.00004795681,0.00003116214,0.00074859423,0.00012058572,0.0013016206],"genre_scores_gemma":[0.9941772,0.0014292841,0.002038499,0.000068028065,0.000022211645,0.00003651382,0.0008047188,0.00001848998,0.0014051017],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999027,0.000012079907,0.000008686413,0.000024084784,0.000038303268,0.000014114009],"domain_scores_gemma":[0.99976176,0.000029856776,0.000119735814,0.000014888158,0.00002828878,0.000045529792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001046542,0.00041573428,0.00031734264,0.00036150406,0.00033703313,0.0004125831,0.0001881575,0.00050647464,0.0009896208],"category_scores_gemma":[0.0002021753,0.00014244462,0.0003078989,0.00024253814,0.00025977325,0.00020224336,0.0003549569,0.00034927973,0.00047767945],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015151607,0.00002233475,0.0026633888,0.00010836764,0.000009050894,0.00044574603,0.000032946475,0.00011603874,0.9940924,0.00015860086,0.00008006959,0.0021195004],"study_design_scores_gemma":[0.00005562486,0.00060974533,0.1482879,0.000108405,0.000102766535,0.009687595,0.00035185312,0.0058484683,0.8142206,0.0015344061,0.019141361,0.000051183946],"about_ca_topic_score_codex":0.00029927376,"about_ca_topic_score_gemma":0.00030478672,"teacher_disagreement_score":0.0009896208,"about_ca_system_score_codex":0.00027941732,"about_ca_system_score_gemma":0.0001788217,"threshold_uncertainty_score":0.0033106208},"labels":[],"label_agreement":null},{"id":"W1976014853","doi":"10.1186/1471-2180-11-69","title":"Production, purification, sequencing and activity spectra of mutacins D-123.1 and F-59.1","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université Laval","funders":"Canadian Forest Service; Natural Sciences and Engineering Research Council of Canada; U.S. Forest Service; University of Ottawa; Université Laval","keywords":"Lantibiotics; Bacteriocin; Biology; Streptococcus mutans; Edman degradation; Molecular mass; Microbiology; Biofilm; Amino acid; Bacteria; Peptide sequence; Biochemistry; Antimicrobial; Genetics; Gene; Enzyme","score_opus":0.048020870518052504,"score_gpt":0.20636674121310686,"score_spread":0.15834587069505435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976014853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99000657,0.0016453367,0.0037873199,0.0001518623,0.000019749472,0.00011148246,0.0027385743,0.000048407604,0.0014907222],"genre_scores_gemma":[0.96427256,0.0013238713,0.015084852,0.00009657761,0.00001671538,0.00010371666,0.015487967,0.00007180777,0.0035419716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996457,0.00004013958,0.000049960327,0.000052481202,0.00016023083,0.000051494306],"domain_scores_gemma":[0.9994961,0.000086217,0.00016142057,0.000032555505,0.00013937555,0.00008427153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024654507,0.0004345822,0.0002838165,0.00049334415,0.00017590164,0.00043911085,0.00025767798,0.00037481438,0.0010127906],"category_scores_gemma":[0.0006233345,0.000112188194,0.0005723504,0.00061541353,0.00023577202,0.00026774794,0.00037824933,0.0005347696,0.00069417345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002026545,0.00008124216,0.00092214777,0.00008310683,0.0000068265235,0.000110118206,0.00004457638,0.00011951816,0.99530596,0.000052696152,0.00004895216,0.0030222065],"study_design_scores_gemma":[0.000024847724,0.00042486793,0.016595993,0.00003286005,0.00003876061,0.0011778905,0.000121232944,0.0007251563,0.975419,0.000073466166,0.005347648,0.000018314087],"about_ca_topic_score_codex":0.001541148,"about_ca_topic_score_gemma":0.0005383893,"teacher_disagreement_score":0.001541148,"about_ca_system_score_codex":0.00038046806,"about_ca_system_score_gemma":0.0003349737,"threshold_uncertainty_score":0.0033881664},"labels":[],"label_agreement":null},{"id":"W1976233036","doi":"10.1186/1471-2180-10-92","title":"Identification and characterization of the intracellular poly-3-hydroxybutyrate depolymerase enzyme PhaZ of Sinorhizobium meliloti","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University; University of Waterloo; Council of Canadian Academies","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sinorhizobium meliloti; Mutant; Biology; Biochemistry; Symbiosis; Enzyme; Rhizosphere; Root nodule; Microbiology; Gene; Bacteria; Genetics","score_opus":0.0069955888181035646,"score_gpt":0.18491161300704784,"score_spread":0.17791602418894428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976233036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99249166,0.0007107006,0.004470019,0.00010071177,0.000009580404,0.000033845845,0.0015653146,0.00005684103,0.0005613302],"genre_scores_gemma":[0.9859154,0.00054293644,0.006268999,0.000055345405,0.0000078497005,0.000036819678,0.0056060026,0.0000309154,0.001535669],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994004,0.0000069809207,0.000007980549,0.000013435215,0.000019153691,0.000012384372],"domain_scores_gemma":[0.99980193,0.00003202349,0.00006491555,0.000024776866,0.000034782992,0.000041480384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000100787875,0.00053326343,0.00027488047,0.00036024972,0.00010742257,0.00026574693,0.00013767523,0.0002896509,0.0005368845],"category_scores_gemma":[0.00018930904,0.00011490883,0.00048160908,0.0002653097,0.0001636403,0.00016003504,0.00020409725,0.0002611674,0.0007156951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057757257,0.000011685264,0.00082701544,0.00003126262,0.0000033495958,0.00004761528,0.0000116601495,0.000027896096,0.9982407,0.000012390097,0.0000062801155,0.0007224716],"study_design_scores_gemma":[0.00003219526,0.00037584925,0.06285118,0.000012866743,0.00007690476,0.0010606817,0.00013664515,0.001402381,0.93126523,0.00007909455,0.002691818,0.000015166108],"about_ca_topic_score_codex":0.0020476768,"about_ca_topic_score_gemma":0.0017750232,"teacher_disagreement_score":0.0020476768,"about_ca_system_score_codex":0.00025437117,"about_ca_system_score_gemma":0.00035797854,"threshold_uncertainty_score":0.004071474},"labels":[],"label_agreement":null},{"id":"W1978095503","doi":"10.1186/1471-2180-13-63","title":"Trans-species activity of a nonself recognition domain","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Neurospora crassa; Ribonucleotide reductase; Saccharomyces cerevisiae; Phenotype; Crassa; Gene; Genetics; Protein subunit; Yeast; Mutant; Cell biology","score_opus":0.02305005753780265,"score_gpt":0.24570037548789384,"score_spread":0.2226503179500912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978095503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854197,0.0024490673,0.008713199,0.00009570716,0.000044990244,0.000024374009,0.00022362849,0.00013878194,0.0028905033],"genre_scores_gemma":[0.99361295,0.00036296228,0.0026186274,0.000049817303,0.000011246975,0.00001253967,0.00084193633,0.000019525283,0.0024703157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988794,0.000015181965,0.000008377316,0.000038839968,0.000032250417,0.00001732344],"domain_scores_gemma":[0.99976605,0.000042917334,0.00006430335,0.00003673691,0.000039407238,0.000050513307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016836885,0.0003445292,0.00014489982,0.00012126093,0.00013551638,0.0002626259,0.0002851474,0.00027172657,0.0020938455],"category_scores_gemma":[0.00014560479,0.000070052636,0.0002433145,0.000084845175,0.00016618926,0.00018243826,0.00023153162,0.00044055106,0.0009550292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027126145,0.000009548863,0.00021254095,0.000022050413,0.0000027860845,0.000041987878,0.0000069277194,0.000019972726,0.99865365,0.0001459067,0.000018309973,0.0008392929],"study_design_scores_gemma":[0.000006556411,0.00010558407,0.0025134275,0.000006151834,0.000012543914,0.0008677016,0.000018986519,0.00080384547,0.9920902,0.000086204716,0.0034853548,0.0000034864963],"about_ca_topic_score_codex":0.00023966172,"about_ca_topic_score_gemma":0.0002465956,"teacher_disagreement_score":0.0020938455,"about_ca_system_score_codex":0.00031989027,"about_ca_system_score_gemma":0.00014906061,"threshold_uncertainty_score":0.0070046186},"labels":[],"label_agreement":null},{"id":"W1983550282","doi":"10.1186/1471-2180-14-157","title":"Differential efficiency in exogenous DNA acquisition among closely related Salmonella strains: implications in bacterial speciation","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; Natural Science Foundation of Heilongjiang Province; National Natural Science Foundation of China","keywords":"Biology; Horizontal gene transfer; DNA; Bacteria; Plasmid; Genetics; Salmonella; Transformation (genetics); Exogenous DNA; Transduction (biophysics); Bacterial genetics; Bacterial genome size; Genetic algorithm; Gene; Genome; Escherichia coli; Biochemistry","score_opus":0.00881425977130409,"score_gpt":0.207041283909961,"score_spread":0.1982270241386569,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983550282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727976,0.0001962967,0.0022141594,0.000014019483,0.0000014049699,0.000008934174,0.000048979957,0.000010518539,0.00022583014],"genre_scores_gemma":[0.9983412,0.00008189113,0.0013551842,0.0000063015664,9.285198e-7,0.00000579822,0.00010617175,0.000005438018,0.00009711077],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909246,0.00031264822,0.0001017089,0.00020446992,0.0001911162,0.00009752021],"domain_scores_gemma":[0.9983753,0.0006728728,0.00043900235,0.00021430964,0.00016339151,0.00013498626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009494867,0.00024218018,0.0002907335,0.0008463968,0.00019518314,0.0005435044,0.00033704113,0.00046438808,0.0007327484],"category_scores_gemma":[0.0017471736,0.0001753579,0.00023287038,0.0004647441,0.0004728062,0.0004178962,0.0006836894,0.00030097252,0.00022726493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018932197,0.000057391717,0.027959948,0.00008283604,0.00004029145,0.000046198646,0.00013433454,0.00023114661,0.9673228,0.00015142118,0.000009120315,0.0037751896],"study_design_scores_gemma":[0.000010907488,0.0010284177,0.37994957,0.000022517175,0.000106320345,0.0014746928,0.00041860956,0.003351907,0.6124903,0.0004180855,0.0007011591,0.000027554855],"about_ca_topic_score_codex":0.0002360381,"about_ca_topic_score_gemma":0.00019247454,"teacher_disagreement_score":0.0009494867,"about_ca_system_score_codex":0.00022928798,"about_ca_system_score_gemma":0.00014001687,"threshold_uncertainty_score":0.005021453},"labels":[],"label_agreement":null},{"id":"W1989625251","doi":"10.1186/1471-2180-12-269","title":"Effects of the Campylobacter jejuniCJIE1 prophage homologs on adherence and invasion in culture, patient symptoms, and source of infection","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Government of Canada","keywords":"Prophage; Biology; Virulence; Microbiology; Campylobacter jejuni; Population; Host adaptation; Pathogen; Genetics; Gene; Bacteria; Escherichia coli","score_opus":0.011694911118244096,"score_gpt":0.20297494883370135,"score_spread":0.19128003771545726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989625251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988135,0.0003457699,0.00011602436,0.000033703243,0.000008913871,0.000022115464,0.00020324225,0.000004083438,0.0004527014],"genre_scores_gemma":[0.998256,0.00020931296,0.0005263071,0.000049977833,0.000013923947,0.00004062518,0.00053056795,0.0000044925773,0.00036875566],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988182,0.00047660142,0.00012770155,0.00017533949,0.00025372836,0.00014837265],"domain_scores_gemma":[0.9969907,0.001913404,0.0003072693,0.00017269842,0.00030301482,0.0003129259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008220761,0.00040662015,0.0004926327,0.00031922062,0.00028793886,0.0006344688,0.0002717416,0.00046572508,0.002173702],"category_scores_gemma":[0.0023310138,0.00021057103,0.00026681626,0.0003598857,0.00024682094,0.0002745324,0.0005253001,0.00083250814,0.00032198985],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009950152,0.001522585,0.14169979,0.00038897237,0.00016785221,0.0013884079,0.0013771817,0.0004623763,0.8318224,0.00009404285,0.00043703968,0.01068917],"study_design_scores_gemma":[0.00012637665,0.013020683,0.60331976,0.00006972183,0.0002288368,0.004318307,0.0013863534,0.0021523014,0.37333953,0.000052645562,0.0019340948,0.000051259405],"about_ca_topic_score_codex":0.0015106796,"about_ca_topic_score_gemma":0.0016102707,"teacher_disagreement_score":0.002173702,"about_ca_system_score_codex":0.00030215274,"about_ca_system_score_gemma":0.00029632414,"threshold_uncertainty_score":0.007271707},"labels":[],"label_agreement":null},{"id":"W1990225213","doi":"10.1186/1471-2180-8-134","title":"Generation of a restriction minus enteropathogenic Escherichia coli E2348/69 strain that is efficiently transformed with large, low copy plasmids","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Plasmid; Enteropathogenic Escherichia coli; Pilus; Escherichia coli; Restriction enzyme; Genetics; Transformation (genetics); Virulence; Microbiology; Gene","score_opus":0.03443129043111041,"score_gpt":0.25992673448466197,"score_spread":0.22549544405355157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990225213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95421964,0.0004011625,0.034876216,0.00023775118,0.000099967576,0.0004901879,0.0058831647,0.00049875776,0.0032931468],"genre_scores_gemma":[0.910382,0.00073886465,0.058369774,0.00013599065,0.00002370709,0.00034696053,0.019914215,0.00031923124,0.009769347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960726,0.000055181965,0.000060436418,0.00007578293,0.00013870177,0.00006263954],"domain_scores_gemma":[0.999689,0.00005676971,0.0000861756,0.00006858073,0.000040226703,0.00005926186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028959097,0.0006634694,0.00044593305,0.00042754278,0.00019615777,0.00040735365,0.0005904025,0.00043958286,0.0010363404],"category_scores_gemma":[0.0003092115,0.0002001409,0.00033831195,0.0005355102,0.00024348668,0.0001706245,0.0004991114,0.0007539198,0.00091963605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004029814,0.00006558217,0.0001914859,0.000043396183,0.000006500937,0.00009614642,0.000011941624,0.0000779454,0.99835277,0.00009456738,0.000058493373,0.00096072315],"study_design_scores_gemma":[0.000025285884,0.00024969675,0.004470059,0.000018614475,0.00003426205,0.00083052425,0.000038140115,0.0014562482,0.98729837,0.00006552563,0.005493201,0.000020093043],"about_ca_topic_score_codex":0.0012179787,"about_ca_topic_score_gemma":0.0010093426,"teacher_disagreement_score":0.0012179787,"about_ca_system_score_codex":0.00027067497,"about_ca_system_score_gemma":0.00031472108,"threshold_uncertainty_score":0.0034669042},"labels":[],"label_agreement":null},{"id":"W1990448131","doi":"10.1186/1471-2180-14-71","title":"Identification of a predicted partner-switching system that affects production of the gene transfer agent RcGTA and stationary phase viability in Rhodobacter capsulatus","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Rhodobacter; Biology; Gene; Mutant; Regulator; Genetics; Regulation of gene expression; Regulator gene; Transcription factor; Gene expression; Cell biology","score_opus":0.009712202902920034,"score_gpt":0.22807259258791276,"score_spread":0.21836038968499272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990448131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945903,0.0003864266,0.0038353165,0.000074074596,0.000012011762,0.000043665972,0.0004221831,0.00015780923,0.0004782358],"genre_scores_gemma":[0.9935034,0.00021596011,0.0042769667,0.000045283326,0.000004880964,0.00004018375,0.0011184722,0.000057642195,0.0007372812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998115,0.000025465746,0.000022457201,0.000041643292,0.0000722055,0.000026822647],"domain_scores_gemma":[0.99965334,0.0000583444,0.0001476348,0.00004576859,0.000027835473,0.000066988774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002175015,0.0006182336,0.00041153355,0.00033465645,0.00013782813,0.0003677676,0.00036461127,0.0004316788,0.00065920106],"category_scores_gemma":[0.0002464212,0.00018587416,0.0004278818,0.00024413853,0.00023191982,0.00017774988,0.00038889362,0.0005565685,0.00049300713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035628967,0.000019088624,0.00028581746,0.000014794671,0.0000033962672,0.000047798792,0.0000066678826,0.000047281494,0.9989525,0.000020749418,0.000006668932,0.0005596015],"study_design_scores_gemma":[0.000016759082,0.00026673975,0.009525244,0.000006087987,0.0000316346,0.00055728346,0.000053764918,0.0017848128,0.98692596,0.000032345222,0.00078685407,0.00001255007],"about_ca_topic_score_codex":0.0013390885,"about_ca_topic_score_gemma":0.0012660453,"teacher_disagreement_score":0.0013390885,"about_ca_system_score_codex":0.00042954326,"about_ca_system_score_gemma":0.00037907166,"threshold_uncertainty_score":0.003116548},"labels":[],"label_agreement":null},{"id":"W1992008615","doi":"10.1186/s12866-015-0380-1","title":"N-terminal entrance loop of yeast Yps1 and O-glycosylation of substrates are determinant factors controlling the shedding activity of this GPI-anchored endopeptidase","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Genève; Université Laval","keywords":"Biology; Endopeptidase; Glycosylation; Yeast; Terminal (telecommunication); Cell biology; Biochemistry; Enzyme","score_opus":0.029292717740611075,"score_gpt":0.27094997027469536,"score_spread":0.2416572525340843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992008615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874336,0.0003834881,0.00045909485,0.0000207217,0.0000044933945,0.000005445451,0.00010735324,0.000016266416,0.0002597536],"genre_scores_gemma":[0.99811196,0.00016247603,0.00062432035,0.000016608627,0.0000028158393,0.0000085046795,0.00040426303,0.000010845477,0.0006581007],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999194,0.000012456561,0.000007953397,0.000017475819,0.000022553595,0.00002014647],"domain_scores_gemma":[0.9997552,0.000055859335,0.00009752257,0.000017832379,0.00001677675,0.000056850567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107819935,0.00035797377,0.00015684636,0.00007754853,0.00007468303,0.00025206438,0.00017003382,0.00022357427,0.0015796926],"category_scores_gemma":[0.00016005852,0.00009062169,0.00015391716,0.00009953013,0.00024141572,0.00018071232,0.00017340388,0.00032174194,0.00044726406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002758767,0.000016205702,0.0005676654,0.000021887496,0.0000026774737,0.000061315666,0.000009155924,0.000041390565,0.9983746,0.00002805911,0.000014265915,0.0005869882],"study_design_scores_gemma":[0.000016170425,0.00017803228,0.014937605,0.0000069604935,0.00001221133,0.00036980584,0.00003996696,0.0007246388,0.9826104,0.00002918863,0.00107031,0.00000475979],"about_ca_topic_score_codex":0.0003091434,"about_ca_topic_score_gemma":0.00030577424,"teacher_disagreement_score":0.0015796926,"about_ca_system_score_codex":0.00020767943,"about_ca_system_score_gemma":0.00012963738,"threshold_uncertainty_score":0.0052846074},"labels":[],"label_agreement":null},{"id":"W1998733635","doi":"10.1186/1471-2180-10-145","title":"Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida)","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Ultrastructure; Phylogenetic tree; Phylogenetics; Ribosomal DNA; Zoology; Botany; Genetics","score_opus":0.004335953981256267,"score_gpt":0.20089088377954104,"score_spread":0.19655492979828476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998733635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841547,0.00026922757,0.00029938933,0.000015141879,0.0000034977,0.000009631632,0.00023652973,0.0000065612658,0.0007445901],"genre_scores_gemma":[0.99664587,0.00024518828,0.0016241005,0.000022411732,0.0000055207142,0.000015382497,0.0007703134,0.0000041874678,0.00066706375],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99991477,0.000004614954,0.000007795876,0.000031968517,0.000025888252,0.000015063317],"domain_scores_gemma":[0.99979,0.00002065636,0.00008032249,0.000016705568,0.000046477344,0.00004579126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000080899255,0.00025915282,0.00014157474,0.00055704534,0.0004219034,0.0004751087,0.0002123234,0.0002967539,0.0004234972],"category_scores_gemma":[0.00014152762,0.000142788,0.00011228644,0.00047470268,0.0003069677,0.00033232314,0.0005206897,0.0002644125,0.00017101866],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017725366,0.000028186481,0.044490278,0.00006980168,0.000017679371,0.00028741878,0.00031887408,0.000058251168,0.9497666,0.00008360535,0.00003673347,0.004665252],"study_design_scores_gemma":[0.000011398656,0.00029867727,0.95777893,0.000018046554,0.00005433412,0.0020313782,0.0005984297,0.00067048817,0.034581333,0.0000864368,0.0038558748,0.000014730995],"about_ca_topic_score_codex":0.0027405522,"about_ca_topic_score_gemma":0.003555978,"teacher_disagreement_score":0.0027405522,"about_ca_system_score_codex":0.00023290569,"about_ca_system_score_gemma":0.00021411078,"threshold_uncertainty_score":0.0054492354},"labels":[],"label_agreement":null},{"id":"W1999085178","doi":"10.1186/s12866-015-0371-2","title":"A tyrosine phosphorylation switch controls the interaction between the transmembrane modulator protein Wzd and the tyrosine kinase Wze of Lactobacillus rhamnosus","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Tyrosine phosphorylation; Phosphorylation; SH2 domain; Tyrosine; Lactobacillus rhamnosus; Biochemistry; Protein phosphorylation; Tyrosine kinase; Proto-oncogene tyrosine-protein kinase Src; Molecular biology; Protein kinase A; Signal transduction; Lactobacillus","score_opus":0.01428884058240881,"score_gpt":0.22786294949926103,"score_spread":0.21357410891685222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999085178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984243,0.00014979047,0.0009899015,0.000020158403,0.0000038498715,0.0000043485197,0.000035732835,0.000014492591,0.0003575172],"genre_scores_gemma":[0.9984263,0.00008494448,0.00080846105,0.000011925466,0.0000013840585,0.0000053536137,0.00012693716,0.000006076514,0.00052860525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993277,0.000009305684,0.000005762446,0.000016006412,0.000014967844,0.000021178132],"domain_scores_gemma":[0.99994624,0.000010574672,0.000020598678,0.000004684568,0.000005066767,0.000012758653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000069715694,0.00019900297,0.00012041449,0.000082425686,0.000095737916,0.00023515554,0.00016608454,0.00015515418,0.0007360493],"category_scores_gemma":[0.00011100774,0.00009803029,0.00017547999,0.0000796443,0.00015569334,0.0001755235,0.00027494074,0.00025007562,0.00032989224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010279994,0.000010730464,0.00048291008,0.00001356626,0.0000021783635,0.00005084425,0.0000118633,0.00005697953,0.99872404,0.0000851546,0.000011022708,0.00044804477],"study_design_scores_gemma":[0.000014181015,0.00010798605,0.007641736,0.000004977098,0.000009416829,0.00021462447,0.000059965652,0.0022320158,0.98877513,0.00004960941,0.0008850723,0.0000053221374],"about_ca_topic_score_codex":0.00042224675,"about_ca_topic_score_gemma":0.0003653536,"teacher_disagreement_score":0.0007360493,"about_ca_system_score_codex":0.00025518518,"about_ca_system_score_gemma":0.00012263715,"threshold_uncertainty_score":0.002462387},"labels":[],"label_agreement":null},{"id":"W2001007801","doi":"10.1186/1471-2180-14-173","title":"International Clostridium difficile animal strain collection and large diversity of animal associated strains","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Clostridium difficile; Microbiology; Ribotyping; Parasitology; Transmission (telecommunications); Polymerase chain reaction; Strain (injury); Virology; Zoology; Genetics; Gene; Antibiotics","score_opus":0.026123628490360675,"score_gpt":0.28205800261652386,"score_spread":0.2559343741261632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001007801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9380605,0.0042511714,0.010810233,0.0005037731,0.00026193692,0.00085365644,0.029378824,0.00024003259,0.015639946],"genre_scores_gemma":[0.8222781,0.0033036969,0.039419416,0.00067160866,0.00023341538,0.0007372114,0.12892658,0.00015481982,0.00427515],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973158,0.00048501723,0.0004904065,0.0006138801,0.00070276036,0.00039203418],"domain_scores_gemma":[0.99684155,0.0003352246,0.00095316826,0.0005004222,0.0010391229,0.00033052606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021703672,0.00059915,0.00040023337,0.0028489002,0.00057152647,0.0007236273,0.00054806826,0.00044794695,0.0019069676],"category_scores_gemma":[0.0017799445,0.00023816332,0.00044883683,0.003853648,0.00038475613,0.00027818343,0.0008884502,0.0005918167,0.0009877802],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001702558,0.0004747951,0.71642417,0.0011154669,0.00021205275,0.0010123688,0.0011556197,0.000558169,0.17938818,0.00048503836,0.0062720077,0.09119949],"study_design_scores_gemma":[0.000042551565,0.0008231014,0.94783235,0.00020598162,0.00015150793,0.0025545226,0.00053769187,0.0001669863,0.014349266,0.00007798238,0.033233043,0.000024917868],"about_ca_topic_score_codex":0.00355673,"about_ca_topic_score_gemma":0.0040805554,"teacher_disagreement_score":0.00355673,"about_ca_system_score_codex":0.00034910446,"about_ca_system_score_gemma":0.00079232844,"threshold_uncertainty_score":0.011478126},"labels":[],"label_agreement":null},{"id":"W2001089917","doi":"10.1186/1471-2180-14-143","title":"Effectiveness of the standard and an alternative set of Streptococcus pneumoniae multi locus sequence typing primers","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Children's Hospital; Calgary Laboratory Services; Alberta Children's Hospital; University of Calgary","funders":"Pfizer Canada; Public Health Agency; Public Health Agency of Canada; Pfizer","keywords":"Biology; Multilocus sequence typing; Typing; Locus (genetics); Genetics; Streptococcus pneumoniae; Parasitology; Computational biology; Microbiology; Gene; Genotype; Bacteria; Zoology","score_opus":0.03127862699583048,"score_gpt":0.32376469155325643,"score_spread":0.292486064557426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001089917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9242633,0.008468592,0.059504542,0.00049533544,0.00040094132,0.0011788389,0.00090629637,0.00036790408,0.004414333],"genre_scores_gemma":[0.6540958,0.0017106691,0.33913523,0.00056742824,0.00008901896,0.0007496906,0.0019293027,0.000075399475,0.0016473386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.96911633,0.0086527215,0.0037252817,0.0075927535,0.010059709,0.0008531488],"domain_scores_gemma":[0.98373,0.0066704582,0.002221675,0.0021415658,0.0048050983,0.00043114112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012124063,0.0018190026,0.0013198992,0.0016361495,0.0004952318,0.0018266722,0.0017797279,0.002324426,0.0017753942],"category_scores_gemma":[0.016857885,0.0011935544,0.0012243172,0.0010871704,0.0008790771,0.001359169,0.0011807965,0.0014624462,0.00074916333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00542959,0.0018453011,0.067342535,0.0021665196,0.000551704,0.00030295795,0.00081300916,0.006067139,0.7415411,0.0010933965,0.00083118444,0.17201562],"study_design_scores_gemma":[0.00032263403,0.013818562,0.025833463,0.00043785424,0.0017379987,0.0033795587,0.00039617525,0.02029058,0.91439754,0.0005098455,0.018657796,0.00021791655],"about_ca_topic_score_codex":0.0015557745,"about_ca_topic_score_gemma":0.004092339,"teacher_disagreement_score":0.012124063,"about_ca_system_score_codex":0.0010784356,"about_ca_system_score_gemma":0.00177892,"threshold_uncertainty_score":0.06411892},"labels":[],"label_agreement":null},{"id":"W2002463479","doi":"10.1186/s12866-014-0225-3","title":"The presence of nitrate dramatically changed the predominant microbial community in perchlorate degrading cultures under saline conditions","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Chemical Analysis and Environmental Impact","field":"Environmental Science","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Georgia Institute of Technology; Welch Foundation; National Aeronautics and Space Administration","keywords":"Perchlorate; Nitrate; Brine; Biology; Chlorate; Microbiology; Environmental chemistry; Ecology; Chemistry; Inorganic chemistry","score_opus":0.01848522410679648,"score_gpt":0.2555398142061166,"score_spread":0.23705459009932012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002463479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988023,0.00013224143,0.00040073122,0.000031953423,0.000011748416,0.000011263228,0.00026630407,0.000008196204,0.00033524507],"genre_scores_gemma":[0.9960381,0.00018980198,0.0017621962,0.00005028801,0.000008333957,0.00004238473,0.0009215689,0.000011882891,0.0009753867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996908,0.00003272248,0.000035978803,0.00011043132,0.00007592302,0.000054174732],"domain_scores_gemma":[0.99975234,0.000051930056,0.00005026475,0.000019459236,0.00007156841,0.0000543478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018037646,0.00031664362,0.00036243853,0.0001455057,0.00016238826,0.00059257157,0.0002785996,0.0004399132,0.00068464817],"category_scores_gemma":[0.0003702669,0.00015828115,0.00024777965,0.00017887252,0.00025478745,0.00027725328,0.00039818787,0.00051981816,0.00021466103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117211515,0.000028320264,0.0020704241,0.000026801199,0.000004917083,0.000042708973,0.000063104904,0.000020170559,0.9968336,0.000010615168,0.000008900275,0.0007732583],"study_design_scores_gemma":[0.000024064062,0.0012700488,0.10758823,0.000029242101,0.00006950422,0.0006512064,0.00075494737,0.001088478,0.8866097,0.000093900126,0.0017887993,0.00003179951],"about_ca_topic_score_codex":0.0010452085,"about_ca_topic_score_gemma":0.0012036286,"teacher_disagreement_score":0.0010452085,"about_ca_system_score_codex":0.00016312512,"about_ca_system_score_gemma":0.00023908363,"threshold_uncertainty_score":0.002290368},"labels":[],"label_agreement":null},{"id":"W2002838338","doi":"10.1186/1471-2180-14-191","title":"Collagen and hyaluronan at wound sites influence early polymicrobial biofilm adhesive events","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada","keywords":"Biofilm; Microbiology; Pseudomonas aeruginosa; Staphylococcus aureus; Biology; Wound healing; Hyaluronic acid; Antibiotics; Biofouling; Bacteria; Immunology; Biochemistry","score_opus":0.007074750282017691,"score_gpt":0.2102036821562277,"score_spread":0.20312893187421002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002838338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947201,0.002976043,0.0008392233,0.00006794497,0.000044270022,0.000033817152,0.00017176273,0.000011369632,0.0011355287],"genre_scores_gemma":[0.99600405,0.0013413265,0.00091734657,0.00007262547,0.000012157102,0.000037456728,0.00014813943,0.000005806911,0.001461177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998324,0.000030657262,0.000011729507,0.000019637346,0.00003823977,0.00006738982],"domain_scores_gemma":[0.9996669,0.000074780095,0.00008084832,0.0000132916075,0.00006206646,0.00010214592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019250593,0.00028011054,0.00015369043,0.0001551422,0.00013286521,0.00041938655,0.000104883584,0.00025220236,0.0024347617],"category_scores_gemma":[0.00022723588,0.00012828287,0.0002227143,0.00010234824,0.0001636968,0.00024304322,0.00019455956,0.00051097776,0.0002502292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037052052,0.00006777472,0.0011800237,0.00012279536,0.00000925226,0.000077874145,0.00004309211,0.000038423354,0.99632204,0.000042357286,0.00006862931,0.001657208],"study_design_scores_gemma":[0.00003598219,0.0017440328,0.07783022,0.00007735417,0.000050582465,0.00034629088,0.00043386378,0.0012018125,0.9149002,0.00011091013,0.0032537442,0.000015046069],"about_ca_topic_score_codex":0.00076792185,"about_ca_topic_score_gemma":0.0010558561,"teacher_disagreement_score":0.0024347617,"about_ca_system_score_codex":0.00021069855,"about_ca_system_score_gemma":0.00022488332,"threshold_uncertainty_score":0.008145094},"labels":[],"label_agreement":null},{"id":"W2002868458","doi":"10.1186/1471-2180-12-170","title":"Physical-chemical and microbiological changes in Cerrado Soil under differing sugarcane harvest management systems","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Inter-American Institute for Global Change Research; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; International Development Research Centre; National Science Foundation","keywords":"Denitrifying bacteria; Biology; Agronomy; Cane; Soil fertility; Environmental science; Soil water; Ecology; Denitrification; Sugar; Nitrogen; Chemistry; Food science","score_opus":0.021910907706267087,"score_gpt":0.2136630741329547,"score_spread":0.19175216642668763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002868458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841046,0.00032576098,0.000090229136,0.000016239208,0.0000059820977,0.000015533555,0.0003886757,0.000005531175,0.0007416432],"genre_scores_gemma":[0.99792826,0.0002849162,0.00042216366,0.000040333016,0.000008908349,0.000033502867,0.00078659964,0.0000059966715,0.00048931787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99966013,0.000021091124,0.000014786554,0.00013023184,0.00008643394,0.000087395594],"domain_scores_gemma":[0.999734,0.000030320816,0.00007112896,0.000013243809,0.00010727562,0.000044050816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029514448,0.00060673576,0.0006536075,0.00061541377,0.0006766646,0.001160325,0.00041946812,0.000422083,0.00063610147],"category_scores_gemma":[0.00024579375,0.00013105453,0.00029148592,0.0010081029,0.0005121844,0.00040885495,0.00041424186,0.00047194932,0.000100732344],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017887736,0.0008596358,0.2954738,0.00081503455,0.0003513933,0.00087570417,0.002211158,0.0013922564,0.66579455,0.0002613684,0.00033792775,0.029838461],"study_design_scores_gemma":[0.000010408471,0.00047601134,0.9768634,0.000023078048,0.00008871652,0.000069049944,0.0019786311,0.0007197372,0.018184654,0.00005509574,0.0015088627,0.000022386],"about_ca_topic_score_codex":0.040240563,"about_ca_topic_score_gemma":0.07404371,"teacher_disagreement_score":0.040240563,"about_ca_system_score_codex":0.0013852147,"about_ca_system_score_gemma":0.0011046786,"threshold_uncertainty_score":0.08001268},"labels":[],"label_agreement":null},{"id":"W2003966095","doi":"10.1186/1471-2180-13-19","title":"Characterisation of the bacterial microbiota of the vagina of dairy cows and isolation of pediocin-producing Pediococcus acidilactici","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture Food and Rural Development; University of Alberta","funders":"Canada Research Chairs","keywords":"Biology; Pediococcus acidilactici; Microbiology; Lactobacillus; Pathogenic bacteria; Bacteria; Lactic acid; Lactobacillus plantarum","score_opus":0.015680360310398427,"score_gpt":0.20826433722868323,"score_spread":0.1925839769182848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003966095","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842864,0.0005504982,0.0005020267,0.000018986862,0.0000034462587,0.000012237336,0.00017683556,0.0000050318235,0.00030220137],"genre_scores_gemma":[0.9960871,0.000567845,0.0022126557,0.000046221066,0.000008777463,0.000021162938,0.00062081777,0.000003707528,0.00043176615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998029,0.000024109057,0.000017313492,0.000044243865,0.00007064562,0.00004076791],"domain_scores_gemma":[0.9998307,0.000040499024,0.000049602088,0.000008176266,0.000035286,0.000035699522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020967286,0.00021359224,0.00024701824,0.0004200401,0.00022682309,0.0004414532,0.00013466532,0.0002605578,0.0005228813],"category_scores_gemma":[0.00038206112,0.000102070284,0.0001600039,0.00040737423,0.00016992958,0.00017248142,0.0003067603,0.00022539936,0.00015009523],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023735625,0.00007058007,0.05401934,0.00012711028,0.000017410317,0.00020050516,0.00027760104,0.000067422196,0.936137,0.000015377214,0.000027890996,0.008802355],"study_design_scores_gemma":[0.000016842836,0.0010309493,0.7942103,0.00005565448,0.00008389667,0.00243501,0.0011825737,0.0009170712,0.19765177,0.0000688259,0.0023328536,0.000014181807],"about_ca_topic_score_codex":0.0008965258,"about_ca_topic_score_gemma":0.0006157098,"teacher_disagreement_score":0.0008965258,"about_ca_system_score_codex":0.00011308612,"about_ca_system_score_gemma":0.00019115425,"threshold_uncertainty_score":0.0017825961},"labels":[],"label_agreement":null},{"id":"W2005058616","doi":"10.1186/1471-2180-9-223","title":"Multilocus sequence typing of Cronobacter sakazakii and Cronobacter malonaticus reveals stable clonal structures with clinical significance which do not correlate with biotypes","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Health Canada; Akademie Věd České Republiky; University of Nottingham; Trent University; Micropathology; Nottingham Trent University","keywords":"Biology; Cronobacter sakazakii; Multilocus sequence typing; Cronobacter; Parasitology; Typing; Genetics; Microbiology; Sequence (biology); Computational biology; Evolutionary biology; Genotype; Enterobacter; Bacteria; Gene; Zoology; Escherichia coli","score_opus":0.025419224566114052,"score_gpt":0.3029534996811386,"score_spread":0.27753427511502454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005058616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992387,0.00026352177,0.0002078344,0.000010269731,0.000003861859,0.000012632901,0.00007346327,0.000002862971,0.00018691178],"genre_scores_gemma":[0.9987746,0.00011034085,0.0006882719,0.000008646816,0.000003962178,0.000007863787,0.00030162992,0.000001233257,0.000103428516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99956197,0.00005453109,0.00007449608,0.00009419216,0.00013214175,0.00008273471],"domain_scores_gemma":[0.99835545,0.000281305,0.00065852184,0.00008859753,0.0004091886,0.00020693919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003688844,0.00028311656,0.00022080353,0.0010816555,0.00019147403,0.0003318052,0.00021010994,0.00028708717,0.00041136725],"category_scores_gemma":[0.0022955353,0.00011801797,0.00018843399,0.00064804085,0.00025611924,0.00022890484,0.00032007543,0.00019514072,0.00011107222],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096318335,0.00012949454,0.79003155,0.00016523195,0.000090052235,0.000592692,0.00044547408,0.00031173366,0.18445107,0.00007309649,0.0001057445,0.022640685],"study_design_scores_gemma":[0.000016684298,0.0005065394,0.9793338,0.000022570408,0.000055295583,0.0019990832,0.00029231227,0.00051578326,0.016746493,0.000028763401,0.00047381016,0.000008929252],"about_ca_topic_score_codex":0.0059564053,"about_ca_topic_score_gemma":0.0057380083,"teacher_disagreement_score":0.0059564053,"about_ca_system_score_codex":0.00040553126,"about_ca_system_score_gemma":0.00026215558,"threshold_uncertainty_score":0.0118435025},"labels":[],"label_agreement":null},{"id":"W2006159396","doi":"10.1186/1471-2180-9-190","title":"Susceptibility of Pediococcus isolates to antimicrobial compounds in relation to hop-resistance and beer-spoilage","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"Canadian Institutes of Health Research","keywords":"Pediococcus; Biology; Food spoilage; Antimicrobial; Antibiotic resistance; Microbiology; Antibiotics; Bacteria; Lactobacillus; Food science; Fermentation; Genetics","score_opus":0.015785433996488893,"score_gpt":0.23658238121055775,"score_spread":0.22079694721406884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006159396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984883,0.0003586871,0.00021183603,0.000023664026,0.00000358954,0.000021842194,0.00037654382,0.000011059462,0.0005044382],"genre_scores_gemma":[0.9986665,0.00016983479,0.00046582223,0.0000134449265,0.0000038034714,0.000012108348,0.00039241242,0.000003677195,0.00027233147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99968255,0.000040662213,0.00004647204,0.00007589583,0.00008965317,0.00006485922],"domain_scores_gemma":[0.99919015,0.00021051423,0.00026064346,0.000045765406,0.00015351486,0.00013942487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019252961,0.0003595767,0.00030555043,0.0007436596,0.00024755602,0.00049815775,0.00020413676,0.00030032158,0.0014018713],"category_scores_gemma":[0.00081185973,0.00010900787,0.00023985672,0.0008049814,0.00026188826,0.00019450189,0.0003851499,0.00037629786,0.00024662618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001956308,0.00059872615,0.3222519,0.00030321194,0.00016450827,0.0017475421,0.00069972285,0.00032647653,0.6601071,0.0001060183,0.00016965848,0.0115687875],"study_design_scores_gemma":[0.000013043725,0.0016420225,0.7779817,0.000030241215,0.00018629074,0.0063012787,0.0010665135,0.0006410372,0.21082479,0.00012597503,0.0011603411,0.000026735315],"about_ca_topic_score_codex":0.0019589989,"about_ca_topic_score_gemma":0.0010349754,"teacher_disagreement_score":0.0019589989,"about_ca_system_score_codex":0.00015114826,"about_ca_system_score_gemma":0.00021106872,"threshold_uncertainty_score":0.004689753},"labels":[],"label_agreement":null},{"id":"W2006463885","doi":"10.1186/1471-2180-12-264","title":"Inter- and Intra-subtype genotypic differences that differentiate Mycobacterium avium subspecies paratuberculosis strains","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Institut National de la Recherche Agronomique; Eusko Jaurlaritza; Scottish Government; Rural and Environment Science and Analytical Services Division","keywords":"Biology; Restriction fragment length polymorphism; Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Pulsed-field gel electrophoresis; Genotype; Typing; Genetics; Single-nucleotide polymorphism; SNP array; Insertion sequence; Virology; Microbiology; Mycobacterium; Gene; Genome; Bacteria","score_opus":0.04723452751054042,"score_gpt":0.2775204812925362,"score_spread":0.2302859537819958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006463885","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931717,0.00013406113,0.00016651732,0.0000071065383,0.000001559226,0.0000053960207,0.00011602089,0.0000027278163,0.00024940184],"genre_scores_gemma":[0.9990415,0.00005532489,0.00046200663,0.000013068776,0.000002550105,0.0000075708876,0.00030448198,0.0000029147147,0.00011060984],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997528,0.000042377025,0.000035392408,0.00007491643,0.00004870389,0.00004573143],"domain_scores_gemma":[0.9993831,0.00021518122,0.00017182546,0.000060334994,0.000098286946,0.00007130547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026085906,0.00020443281,0.00015117883,0.0004540122,0.0001276732,0.00027217768,0.00016739429,0.0003900104,0.0008423614],"category_scores_gemma":[0.0008468085,0.00008797521,0.00012900577,0.0003720568,0.00018155758,0.00016411659,0.00016797037,0.00023216936,0.0002776871],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010665738,0.00028110767,0.552047,0.00013486709,0.00008046787,0.0003414543,0.0006742471,0.00029057762,0.4287165,0.00007579729,0.00013278783,0.016158698],"study_design_scores_gemma":[0.000014423582,0.0004628892,0.97828805,0.000017174916,0.0000493251,0.0014829749,0.00044726985,0.00032487357,0.0182718,0.000066585104,0.00056815357,0.000006488409],"about_ca_topic_score_codex":0.00049702794,"about_ca_topic_score_gemma":0.0008909714,"teacher_disagreement_score":0.0008423614,"about_ca_system_score_codex":0.00009370702,"about_ca_system_score_gemma":0.000066818844,"threshold_uncertainty_score":0.0028179884},"labels":[],"label_agreement":null},{"id":"W2006500776","doi":"10.1186/s12866-014-0224-4","title":"Bacterial associates of seed-parasitic wasps (Hymenoptera: Megastigmus)","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Institut National de la Recherche Agronomique; Western Canada Research Grid; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Host (biology); Botany; Wolbachia; Parasitoid; Parasitism; Hymenoptera; Microbiome; Zoology; Ecology; Genetics","score_opus":0.011907203025241345,"score_gpt":0.20289589263103738,"score_spread":0.19098868960579604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006500776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987036,0.0002912068,0.00013843122,0.000011338068,0.0000023364757,0.000013685949,0.00048910297,0.0000068873937,0.00034334837],"genre_scores_gemma":[0.99750936,0.00030190358,0.0010137028,0.000026806863,0.000004147747,0.000016464906,0.000746832,0.0000030201384,0.0003777271],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998845,0.000010998554,0.000009477369,0.00003980399,0.000030188607,0.000024990266],"domain_scores_gemma":[0.9998325,0.000023834795,0.0000818315,0.0000066838456,0.000026643955,0.000028312375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000083086044,0.00031020155,0.00017760554,0.00066702836,0.00032840544,0.0002716245,0.000099487144,0.00020599092,0.0009634923],"category_scores_gemma":[0.0002250401,0.00010813141,0.00013494721,0.00046079035,0.00019243747,0.00021661015,0.00026858115,0.00017126247,0.00017923942],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029710407,0.00006629946,0.35557148,0.0003404522,0.00006894947,0.00028204004,0.00076831336,0.00012441288,0.6283876,0.000059567195,0.0001791139,0.013854736],"study_design_scores_gemma":[0.0000047860426,0.00028332497,0.9842785,0.000025593947,0.00004040926,0.00043217602,0.000442318,0.00021242393,0.013330176,0.000027024296,0.0009184804,0.000004720041],"about_ca_topic_score_codex":0.0018247684,"about_ca_topic_score_gemma":0.0034700474,"teacher_disagreement_score":0.0018247684,"about_ca_system_score_codex":0.00017645887,"about_ca_system_score_gemma":0.00017267163,"threshold_uncertainty_score":0.0036283731},"labels":[],"label_agreement":null},{"id":"W2006985658","doi":"10.1186/1471-2180-10-73","title":"Detection and quantification of 14 Campylobacter species in pet dogs reveals an increase in species richness in feces of diarrheic animals","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Saskatchewan","funders":"Saskatchewan Health Research Foundation","keywords":"Campylobacter; Biology; Campylobacteriosis; Feces; Campylobacter fetus; Population; Species richness; Campylobacter coli; Microbiology; Veterinary medicine; Campylobacter jejuni; Zoology; Ecology; Bacteria","score_opus":0.02627157307018122,"score_gpt":0.24248779782899396,"score_spread":0.21621622475881275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006985658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989478,0.00030371244,0.00022846607,0.000012374562,0.000002392058,0.0000055180253,0.00016453095,0.00001079518,0.00032452817],"genre_scores_gemma":[0.9987791,0.000117772266,0.000599836,0.000018795838,0.00000327716,0.0000073913375,0.00029398862,0.0000022231543,0.00017757474],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963677,0.000053673604,0.00003628733,0.00011443546,0.00010141282,0.000057344874],"domain_scores_gemma":[0.99935323,0.00016295417,0.00024726984,0.00003131024,0.00011934267,0.0000858532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023817991,0.00018876776,0.0002082803,0.0009960814,0.00021842089,0.00034642167,0.00013841924,0.0003480759,0.0010307304],"category_scores_gemma":[0.0006464072,0.0002008848,0.0001278579,0.00041792387,0.00040512692,0.00025383433,0.00021776793,0.0001977757,0.00019485845],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052348716,0.000119645345,0.7710481,0.00017968996,0.00007177299,0.00030726145,0.00047119576,0.00010553438,0.21844235,0.000031026313,0.0001730773,0.008526839],"study_design_scores_gemma":[0.0000025974853,0.00027192122,0.99100655,0.000008426614,0.000016358319,0.0010035203,0.0002647138,0.00012998388,0.0070007322,0.0000120951345,0.0002803689,0.0000026856235],"about_ca_topic_score_codex":0.0010953048,"about_ca_topic_score_gemma":0.0013683054,"teacher_disagreement_score":0.0010953048,"about_ca_system_score_codex":0.00016099222,"about_ca_system_score_gemma":0.000084721156,"threshold_uncertainty_score":0.0034481883},"labels":[],"label_agreement":null},{"id":"W2007055954","doi":"10.1186/1471-2180-13-187","title":"Broad-spectrum antiviral activity of chebulagic acid and punicalagin against viruses that use glycosaminoglycans for entry","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pomegranate: compositions and health benefits","field":"Nursing","cited_by":218,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"IWK Health Centre; Taipei Medical University; Canadian Institutes of Health Research; National Science Council","keywords":"Biology; Virology; Viral entry; Virus; Herpes simplex virus; Dengue virus; Antibody-dependent enhancement; Viral replication; Microbiology; Vero cell","score_opus":0.04468910371906363,"score_gpt":0.284438750563935,"score_spread":0.23974964684487135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007055954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912606,0.005823483,0.0011320792,0.0000540581,0.000022288315,0.000039145834,0.0002761872,0.000036021996,0.0013561314],"genre_scores_gemma":[0.9966272,0.0014015951,0.0011025807,0.00004584145,0.0000073645397,0.000016574591,0.00020963293,0.0000048861234,0.0005842776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99996066,0.000008437532,0.0000033511203,0.000008676046,0.000008049906,0.0000107764035],"domain_scores_gemma":[0.99994504,0.000011466824,0.000012026667,0.0000057069733,0.000010573792,0.0000151052045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000097058844,0.00033429707,0.00019334919,0.00025874545,0.0001017559,0.00016513157,0.0001660581,0.00024856164,0.0010828004],"category_scores_gemma":[0.000088486595,0.000057892685,0.00021661035,0.00014851907,0.0001897451,0.00014054228,0.00015598147,0.0002776487,0.00013298207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028585628,0.000050790237,0.00028728286,0.00014721062,0.000009416841,0.000047011064,0.000009864106,0.00013971292,0.99442095,0.00004802563,0.000026116812,0.0045278324],"study_design_scores_gemma":[0.00008335667,0.0019528619,0.0091139525,0.000024748562,0.000043396776,0.00038683205,0.000027303267,0.0003675309,0.9843939,0.00006465121,0.0035340907,0.000007485327],"about_ca_topic_score_codex":0.00038126335,"about_ca_topic_score_gemma":0.0004773558,"teacher_disagreement_score":0.0010828004,"about_ca_system_score_codex":0.00013645206,"about_ca_system_score_gemma":0.0001468061,"threshold_uncertainty_score":0.003622353},"labels":[],"label_agreement":null},{"id":"W2008965840","doi":"10.1186/1471-2180-10-50","title":"Inositol monophosphate phosphatase genes of Mycobacterium tuberculosis","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"European Commission; Department for Environment, Food and Rural Affairs, UK Government; Wellcome Trust","keywords":"Mycobacterium smegmatis; Inositol; Biology; Mutant; Biochemistry; Inositol phosphate; Phosphatidylinositol; Phosphatase; Mycobacterium tuberculosis; Dephosphorylation; Mutagenesis; Gene; Molecular biology; Kinase; Phosphorylation; Tuberculosis; Receptor","score_opus":0.01743236216809371,"score_gpt":0.2922278337669731,"score_spread":0.2747954715988794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008965840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98042655,0.004069665,0.006077678,0.00034714592,0.00007952989,0.000121745325,0.0033081628,0.0002692032,0.0053002667],"genre_scores_gemma":[0.9743069,0.001741082,0.0086009875,0.00019245023,0.000031314154,0.00009412959,0.0090429755,0.00006972592,0.0059204125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988616,0.000009758321,0.000012142632,0.00003505387,0.000036584162,0.000020221985],"domain_scores_gemma":[0.9998636,0.000030847856,0.000035169673,0.000016573164,0.000026381847,0.000027439271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000105526626,0.00038097237,0.00017485383,0.00026739918,0.00017282664,0.00026772317,0.0002508515,0.00034374752,0.0018291222],"category_scores_gemma":[0.0002496111,0.00012918844,0.00025293225,0.00031204527,0.0001423884,0.00013871692,0.0002920055,0.0004896186,0.0014052063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011917232,0.000041761705,0.0012887308,0.00009602715,0.000006110103,0.00023275755,0.00002903661,0.000074453616,0.992957,0.00014234794,0.00010526192,0.004907296],"study_design_scores_gemma":[0.00013496164,0.0006145143,0.1011981,0.00009192856,0.000113099944,0.007234166,0.00018607981,0.002160068,0.8517976,0.00096565904,0.03547941,0.000024374818],"about_ca_topic_score_codex":0.0010572618,"about_ca_topic_score_gemma":0.00052862574,"teacher_disagreement_score":0.0018291222,"about_ca_system_score_codex":0.0003345719,"about_ca_system_score_gemma":0.00024735337,"threshold_uncertainty_score":0.006119013},"labels":[],"label_agreement":null},{"id":"W2009031433","doi":"10.1186/1471-2180-13-246","title":"C. albicansgrowth, transition, biofilm formation, and gene expression modulation by antimicrobial decapeptide KSL-W","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"U.S. Army; Medical Research and Materiel Command; Université Laval","keywords":"Biofilm; Biology; Antimicrobial; Microbiology; Parasitology; Gene expression; Transition (genetics); Gene; Antimicrobial peptides; Biochemistry; Bacteria; Genetics; Zoology","score_opus":0.008291354542027314,"score_gpt":0.196414909346207,"score_spread":0.1881235548041797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009031433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99672204,0.0014248566,0.0007235725,0.000049454276,0.000013400244,0.000025324742,0.00038806835,0.000021814538,0.0006314555],"genre_scores_gemma":[0.9939101,0.0010683805,0.0024949948,0.00007258955,0.000008994006,0.00005728823,0.00072298414,0.000009892191,0.0016546913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999013,0.000009595614,0.000012792534,0.000017765486,0.00003441657,0.000024127785],"domain_scores_gemma":[0.9999181,0.000014517887,0.000030224737,0.000006860695,0.00001422802,0.00001600453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007806136,0.00032842957,0.00016373895,0.00013536683,0.000076157216,0.00019346867,0.00012128557,0.00019736559,0.0006754323],"category_scores_gemma":[0.000085949825,0.00008885348,0.00018326449,0.00015373615,0.00015586446,0.00013486951,0.00011232211,0.00048340354,0.00018096736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010087177,0.000025512747,0.00008809325,0.000023436607,0.0000015411501,0.000018285325,0.000004872193,0.000024186145,0.99911517,0.000008457019,0.000011627117,0.0005779796],"study_design_scores_gemma":[0.00000692017,0.0003121299,0.004684584,0.000005691997,0.000006172974,0.00007993699,0.000018864508,0.00034726874,0.99412656,0.0000112290545,0.00039753944,0.000003106673],"about_ca_topic_score_codex":0.0003776118,"about_ca_topic_score_gemma":0.0005068009,"teacher_disagreement_score":0.0006754323,"about_ca_system_score_codex":0.0001878764,"about_ca_system_score_gemma":0.0001652962,"threshold_uncertainty_score":0.0022595525},"labels":[],"label_agreement":null},{"id":"W2009894524","doi":"10.1186/1471-2180-14-183","title":"Regulated proteolysis of the alternative sigma factor SigX in Streptococcus mutans: implication in the escape from competence","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; University of Illinois at Chicago; University of Illinois at Urbana-Champaign; Dalhousie University; Natural Sciences and Engineering Research Council of Canada; Université Catholique de Louvain","keywords":"Proteolysis; Biology; Streptococcus mutans; Biochemistry; Chemistry; Bacteria; Genetics; Enzyme","score_opus":0.02090467455948386,"score_gpt":0.28068367403935707,"score_spread":0.2597789994798732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009894524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975178,0.0013857419,0.0006368193,0.000039400828,0.000006399458,0.000005421369,0.00012690367,0.000016044476,0.0002654312],"genre_scores_gemma":[0.99819165,0.00037130574,0.00062081544,0.000014824048,0.0000040813943,0.0000076183833,0.00020184126,0.0000039711463,0.00058396795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992406,0.000011603927,0.000010017465,0.000014283709,0.000023972414,0.000016048965],"domain_scores_gemma":[0.9998933,0.000016741871,0.000036748388,0.000008106015,0.000018187677,0.000026839942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109177025,0.00029408777,0.00017265617,0.00013948862,0.00010970655,0.0002850178,0.000089392975,0.0002750965,0.00052635965],"category_scores_gemma":[0.0000882844,0.00007411157,0.00020951979,0.00010650694,0.00017451322,0.00016548921,0.00023484971,0.00030066853,0.0001990751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010879905,0.000014756698,0.0008486372,0.000033545643,0.000002960552,0.00011530661,0.000009463535,0.000035893416,0.9982527,0.00003738395,0.000013061771,0.00052749994],"study_design_scores_gemma":[0.000009788226,0.0002678332,0.029959826,0.000007932873,0.000013916373,0.0010519122,0.000058169717,0.0010256477,0.96658975,0.000086381006,0.0009233427,0.000005563548],"about_ca_topic_score_codex":0.00028493084,"about_ca_topic_score_gemma":0.0003047504,"teacher_disagreement_score":0.00052635965,"about_ca_system_score_codex":0.00031474748,"about_ca_system_score_gemma":0.00013734141,"threshold_uncertainty_score":0.0022836328},"labels":[],"label_agreement":null},{"id":"W2010287357","doi":"10.1186/1471-2180-7-87","title":"Limited genetic diversity in Salmonella enterica Serovar Enteritidis PT13","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care; University of Manitoba; Public Health Agency of Canada","funders":"British Columbia Centre for Disease Control","keywords":"Biology; Salmonella enterica; Salmonella enteritidis; Genetic diversity; Serotype; Parasitology; Salmonella; Microbiology; Genetics; Virology; Evolutionary biology; Computational biology; Zoology; Bacteria","score_opus":0.03740413873482317,"score_gpt":0.23230821592475792,"score_spread":0.19490407718993474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010287357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848926,0.00007970775,0.000533343,0.000009031292,0.0000015552562,0.000016915565,0.00037598226,0.000008605555,0.00048555987],"genre_scores_gemma":[0.99701476,0.000107999,0.0009987924,0.00002275989,0.0000027608664,0.000024435083,0.0014739572,0.000009885082,0.00034468013],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996075,0.000037296213,0.000034130924,0.00011209611,0.00012568808,0.00008327837],"domain_scores_gemma":[0.99915695,0.00015250934,0.0002653337,0.000063149346,0.0002270985,0.0001348794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003516298,0.0003484099,0.00034406374,0.0011405835,0.00031665483,0.00056056783,0.00036736167,0.00033768264,0.0012187323],"category_scores_gemma":[0.0008569399,0.00017923756,0.00030497304,0.0015231523,0.00040394088,0.00015671465,0.00047193648,0.00035983353,0.0003438924],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020821954,0.00018912255,0.27938747,0.00026208683,0.0001363579,0.0007274409,0.0009711722,0.0004794583,0.7006759,0.0001693944,0.00014926295,0.0147702405],"study_design_scores_gemma":[0.000023266992,0.00076507055,0.9519756,0.00003756354,0.00012320628,0.0021348752,0.000666186,0.000850786,0.04186868,0.000093677314,0.0014473585,0.000013772596],"about_ca_topic_score_codex":0.0068862876,"about_ca_topic_score_gemma":0.010239576,"teacher_disagreement_score":0.0068862876,"about_ca_system_score_codex":0.00055862183,"about_ca_system_score_gemma":0.0006117801,"threshold_uncertainty_score":0.013692379},"labels":[],"label_agreement":null},{"id":"W2010700705","doi":"10.1186/1471-2180-11-226","title":"A novel bacteriophage Tail-Associated Muralytic Enzyme (TAME) from Phage K and its development into a potent antistaphylococcal protein","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heritage Medical Research Clinic","funders":"Florida International University","keywords":"Biology; Bacteriophage; Staphylococcus aureus; Microbiology; Virulence; Myoviridae; Gene; Lysin; Virology; Bacteria; Escherichia coli; Biochemistry; Genetics","score_opus":0.022024838275964707,"score_gpt":0.21182150136431488,"score_spread":0.18979666308835016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010700705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887121,0.0008918406,0.009276608,0.00008446584,0.00002311084,0.00006898537,0.00012663088,0.000045183715,0.00077101775],"genre_scores_gemma":[0.98213047,0.0006901071,0.014244712,0.000037724032,0.000008992362,0.00004477102,0.00053943857,0.000024481686,0.0022792418],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999211,0.000009683985,0.000007480806,0.000020140087,0.000023429087,0.000018128574],"domain_scores_gemma":[0.99991703,0.000010758989,0.000023812567,0.000009476808,0.000011847187,0.000027096507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001364863,0.00033632552,0.00019953155,0.00014794648,0.00011876657,0.0002573912,0.00023081219,0.00028071637,0.000421113],"category_scores_gemma":[0.00013054827,0.000089852765,0.00033970686,0.00012885443,0.00024110104,0.0002085957,0.00032384438,0.00045729848,0.00026274685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062096406,0.000030182986,0.00027037246,0.000031393156,0.000003134835,0.00008856412,0.000011991133,0.000078017336,0.99769825,0.00007612152,0.000021532125,0.0016284356],"study_design_scores_gemma":[0.000021461914,0.0005069151,0.0022892435,0.000006911212,0.000017233722,0.00078827055,0.000022945962,0.00092122616,0.9919689,0.00004225902,0.0034073866,0.0000072465846],"about_ca_topic_score_codex":0.00026893144,"about_ca_topic_score_gemma":0.00020995995,"teacher_disagreement_score":0.000421113,"about_ca_system_score_codex":0.00020502997,"about_ca_system_score_gemma":0.00021198842,"threshold_uncertainty_score":0.0014875531},"labels":[],"label_agreement":null},{"id":"W2010704116","doi":"10.1186/1471-2180-10-253","title":"Structural and antimicrobial properties of human pre-elafin/trappin-2 and derived peptides against Pseudomonas aeruginosa","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Pseudomonas aeruginosa; Elafin; Microbiology; Antimicrobial; Parasitology; Medical microbiology; Antimicrobial peptides; Bacteria; Immunology; Genetics; Zoology","score_opus":0.015291019872521223,"score_gpt":0.2222607018191141,"score_spread":0.20696968194659288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010704116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990601,0.00042398943,0.0002713567,0.000019689942,0.0000034826844,0.0000059552995,0.00007640009,0.0000035765293,0.00013555879],"genre_scores_gemma":[0.9981974,0.00026581628,0.0006532065,0.000051594423,0.000006989235,0.000012252365,0.0004009318,0.0000027752008,0.00040895533],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994373,0.000011796115,0.0000043642135,0.0000120336035,0.000015829417,0.000012161295],"domain_scores_gemma":[0.99990916,0.000028059152,0.000022068305,0.000005351767,0.000011787577,0.000023518935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109900255,0.00020527371,0.00007121906,0.000083053805,0.00007459648,0.00009410721,0.00011393548,0.00018968215,0.0006477059],"category_scores_gemma":[0.0001992785,0.00004979871,0.00012390499,0.00006348955,0.00013850386,0.00009099483,0.000075943055,0.00019358972,0.00012465336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002973186,0.00003298185,0.0002198596,0.000027930375,0.000005255936,0.00005718395,0.00001119546,0.00017028055,0.998428,0.000017288614,0.000019610472,0.00071310333],"study_design_scores_gemma":[0.00006972608,0.002109714,0.0153016485,0.000011127791,0.000032520373,0.0010469765,0.000041734216,0.0023421403,0.977234,0.000054180593,0.0017441658,0.00001204542],"about_ca_topic_score_codex":0.0002661105,"about_ca_topic_score_gemma":0.00022705311,"teacher_disagreement_score":0.0006477059,"about_ca_system_score_codex":0.00016027722,"about_ca_system_score_gemma":0.000081523365,"threshold_uncertainty_score":0.002166748},"labels":[],"label_agreement":null},{"id":"W2011559993","doi":"10.1186/1471-2180-10-18","title":"Interactions between flagellar and type III secretion proteins in Chlamydia pneumoniae","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; St. Joseph’s Healthcare Hamilton; McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Flagellum; Chlamydiae; Secretion; Cell biology; Flagellin; Genetics; Gene; Type three secretion system; Protein domain; Bacteria; Biochemistry; Virulence","score_opus":0.020956357248274896,"score_gpt":0.2934918632767552,"score_spread":0.2725355060284803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011559993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935175,0.003559879,0.0011458179,0.00012159531,0.00003656295,0.00001846751,0.0005303174,0.000037418347,0.0010323712],"genre_scores_gemma":[0.9945797,0.0009364637,0.001947905,0.00014904827,0.0000069435314,0.0000230901,0.0009256335,0.0000085127085,0.0014227998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960464,0.000054025397,0.00003444369,0.000067907036,0.00011699529,0.00012199649],"domain_scores_gemma":[0.9996698,0.00008485704,0.000067091474,0.000025519581,0.000069333364,0.00008336906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032618752,0.00039139987,0.00033853878,0.00026911224,0.00047457777,0.0005603742,0.00019446164,0.0005052215,0.000603762],"category_scores_gemma":[0.0003410386,0.00021309408,0.00053426164,0.00026812294,0.00016293096,0.00019577958,0.00054119824,0.00046670213,0.00031282005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017392845,0.000044185894,0.0067566396,0.00023842722,0.000030298143,0.00023548321,0.00007621827,0.0001069696,0.9904118,0.00009978255,0.00016575251,0.0016604222],"study_design_scores_gemma":[0.000036401965,0.00056189595,0.27430686,0.0001313001,0.00017008549,0.0029812087,0.0005352399,0.0047379644,0.70051974,0.00016276186,0.015801892,0.000054711476],"about_ca_topic_score_codex":0.0062684203,"about_ca_topic_score_gemma":0.0060834875,"teacher_disagreement_score":0.0062684203,"about_ca_system_score_codex":0.0010511626,"about_ca_system_score_gemma":0.000618056,"threshold_uncertainty_score":0.012463868},"labels":[],"label_agreement":null},{"id":"W2012435763","doi":"10.1186/1471-2180-11-53","title":"Comparative genotypic and pathogenic examination of Campylobacter concisus isolates from diarrheic and non-diarrheic humans","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Genotype; Microbiology; Amplified fragment length polymorphism; Feces; Shigella; Genetics; Gene; Population; Escherichia coli; Genetic diversity; Medicine","score_opus":0.04490116890154294,"score_gpt":0.2270303579894284,"score_spread":0.18212918908788545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012435763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994923,0.000041645246,0.00006874356,0.0000059902877,0.0000018454596,0.000010770554,0.00018564392,0.0000015670204,0.00019157397],"genre_scores_gemma":[0.9984371,0.00007259656,0.00046577782,0.000022701573,0.0000066968973,0.00001802113,0.00076998683,0.000002743839,0.00020437984],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998079,0.000021124055,0.000020472222,0.00006190908,0.000040638235,0.00004797157],"domain_scores_gemma":[0.9996644,0.000058451315,0.000084939646,0.000017850836,0.0001078366,0.00006649743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012579621,0.00024155062,0.00016325597,0.0007750423,0.00043349966,0.00023890907,0.00013456904,0.00030335377,0.00081273867],"category_scores_gemma":[0.0005193593,0.00011378347,0.00015251581,0.0004306164,0.00024215062,0.00009720583,0.00021984434,0.00015007118,0.00013763599],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015804772,0.00025143937,0.5171041,0.00021180608,0.00005789269,0.001301486,0.0014392384,0.00015556224,0.4679536,0.00007518138,0.00019443018,0.0096747205],"study_design_scores_gemma":[0.000010374339,0.0005977275,0.98586744,0.000010234141,0.0000320468,0.0018892509,0.0008230021,0.00020055361,0.010038675,0.000024471465,0.0005000143,0.000006068156],"about_ca_topic_score_codex":0.004326335,"about_ca_topic_score_gemma":0.004311737,"teacher_disagreement_score":0.004326335,"about_ca_system_score_codex":0.00019240244,"about_ca_system_score_gemma":0.00017206895,"threshold_uncertainty_score":0.008602321},"labels":[],"label_agreement":null},{"id":"W2016552683","doi":"10.1186/1471-2180-14-70","title":"The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Apotex (Canada); University of Manitoba; Public Health Agency of Canada","funders":"Government of Canada","keywords":"Prophage; Biology; Virulence; Campylobacter jejuni; Proteome; Microbiology; Proteomics; Campylobacter; Gene expression; Gene; Bacteria; Genetics; Escherichia coli; Bacteriophage","score_opus":0.010127200893522691,"score_gpt":0.1957445747334015,"score_spread":0.1856173738398788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016552683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936054,0.001284228,0.0011078555,0.00016452298,0.00007382607,0.000041974225,0.002451711,0.00007773976,0.0011927226],"genre_scores_gemma":[0.97189695,0.001565443,0.0086829085,0.0002096246,0.000032306547,0.00015897093,0.012488569,0.00014121446,0.004823882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99963987,0.000043931428,0.00003198391,0.000078038,0.000115824725,0.000090381516],"domain_scores_gemma":[0.99975187,0.00006422276,0.00007042388,0.000018663814,0.000045153363,0.000049609807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027064374,0.00058576657,0.00040049443,0.0004039809,0.00026143272,0.00048048887,0.0003415766,0.0003769308,0.0009923432],"category_scores_gemma":[0.00036463665,0.00018817007,0.00031511136,0.0004932511,0.00029964803,0.00024220675,0.00040276983,0.0005431297,0.00036522406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001579669,0.000027732582,0.00020647772,0.000058783884,0.000004192635,0.00003114634,0.00001947613,0.000016356591,0.99902797,0.000011508958,0.000045329074,0.00039307668],"study_design_scores_gemma":[0.000013431104,0.00035056414,0.022474444,0.000028820852,0.000026768113,0.0002488225,0.00008663369,0.00055773684,0.9733267,0.000021703067,0.0028488368,0.00001555062],"about_ca_topic_score_codex":0.0016312676,"about_ca_topic_score_gemma":0.001439019,"teacher_disagreement_score":0.0016312676,"about_ca_system_score_codex":0.0005073787,"about_ca_system_score_gemma":0.00029029697,"threshold_uncertainty_score":0.0036813617},"labels":[],"label_agreement":null},{"id":"W2017727505","doi":"10.1186/1471-2180-11-164","title":"SabR enhances nikkomycin production via regulating the transcriptional level of sanG, a pathway-specific regulatory gene in Streptomyces ansochromogenes","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; University of Alberta","keywords":"Biology; SABR volatility model; Transcription (linguistics); Gene; Promoter; Genetics; Gene expression","score_opus":0.09154859284664409,"score_gpt":0.2504114975146941,"score_spread":0.15886290466805003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017727505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99373794,0.00048539136,0.003825826,0.000058117977,0.000015498295,0.000022540986,0.00028985532,0.00016200547,0.0014028075],"genre_scores_gemma":[0.99504614,0.0001751163,0.0024263225,0.00002314523,0.000005333515,0.000018264129,0.00037034703,0.000034174445,0.0019011841],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987864,0.000022005635,0.000010017496,0.000031581192,0.000036596623,0.000021141672],"domain_scores_gemma":[0.9998814,0.00002781027,0.000034700668,0.000011566189,0.000011501325,0.00003311344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001190967,0.00038552628,0.00027376474,0.00018011729,0.000099557285,0.00017934678,0.00013499611,0.00012020454,0.0009220616],"category_scores_gemma":[0.00009036024,0.0000865593,0.00021104155,0.00009626191,0.00020489062,0.000090050475,0.00022361946,0.00033627215,0.00031043583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003602369,0.000010587401,0.00011385764,0.000014918616,8.007157e-7,0.000016848835,0.000005572745,0.000028225586,0.9993604,0.000021489734,0.000006305029,0.00038502266],"study_design_scores_gemma":[0.000008763061,0.00010749036,0.004939274,0.000003704033,0.000007410988,0.000078432146,0.000026799782,0.0011448814,0.9926467,0.000030610892,0.0010022821,0.0000036342858],"about_ca_topic_score_codex":0.00053659413,"about_ca_topic_score_gemma":0.0006452014,"teacher_disagreement_score":0.0009220616,"about_ca_system_score_codex":0.00029910347,"about_ca_system_score_gemma":0.00018461497,"threshold_uncertainty_score":0.0030846},"labels":[],"label_agreement":null},{"id":"W2023862871","doi":"10.1186/1471-2180-8-89","title":"Genetic characterization of clinical and agri-food isolates of multi drug resistant Salmonella enterica serovar Heidelberg from Canada","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Food Inspection Agency","keywords":"Biology; Pulsed-field gel electrophoresis; Salmonella enterica; Serotype; Restriction fragment length polymorphism; Salmonella; Microbiology; Multiple drug resistance; Antibiotic resistance; Genetic diversity; Genetics; Typing; DNA profiling; Multilocus sequence typing; Genetic variation; Drug resistance; Genotype; Gene; DNA; Antibiotics; Population; Bacteria","score_opus":0.04076566694805303,"score_gpt":0.23474545626812485,"score_spread":0.19397978932007182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023862871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977992,0.00016831253,0.00023127485,0.000053052576,0.0000039634306,0.00003323845,0.0010057304,0.000005926324,0.0006992793],"genre_scores_gemma":[0.99484223,0.00027867156,0.0008719901,0.000071844086,0.0000036434117,0.000012888824,0.0027521148,0.000006413313,0.0011602239],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99966764,0.000010724707,0.000018252547,0.000069549904,0.00013068147,0.00010315498],"domain_scores_gemma":[0.9994491,0.000039232742,0.000064944885,0.000015567579,0.00032015383,0.000111057336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017097317,0.00033997121,0.00017876546,0.0009506372,0.0008559883,0.0005149566,0.00031210392,0.00028957715,0.0007196314],"category_scores_gemma":[0.00065185846,0.00017129105,0.00019433728,0.0010957881,0.00037168828,0.00008149772,0.00031591213,0.00025358298,0.00015185901],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001090158,0.00016288595,0.74118876,0.00028229193,0.00010340941,0.0016810555,0.0032710792,0.00056316954,0.22689271,0.00018860391,0.0008809151,0.02369501],"study_design_scores_gemma":[0.000019893156,0.00024006613,0.9816628,0.000020712692,0.00005321208,0.0011714398,0.0015390512,0.00043940012,0.011560296,0.00002191942,0.0032573247,0.000013803025],"about_ca_topic_score_codex":0.7851018,"about_ca_topic_score_gemma":0.8291771,"teacher_disagreement_score":0.21489823,"about_ca_system_score_codex":0.0033592083,"about_ca_system_score_gemma":0.004868681,"threshold_uncertainty_score":0.43232757},"labels":[],"label_agreement":null},{"id":"W2024950225","doi":"10.1186/1471-2180-9-9","title":"Combining chemical genomics screens in yeast to reveal spectrum of effects of chemical inhibition of sphingolipid biosynthesis","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Sphingolipid Metabolism and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia","funders":"National Cancer Institute","keywords":"Biology; Saccharomyces cerevisiae; Synthetic lethality; Drug action; Gene; Yeast; Chemical library; Drug discovery; Mechanism of action; Sphingolipid; Biochemistry; Genetics; Cell biology; Drug; Computational biology; DNA repair; Pharmacology; In vitro; Small molecule","score_opus":0.006335909284988652,"score_gpt":0.21534042304487694,"score_spread":0.2090045137598883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024950225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9365505,0.0021128878,0.050480265,0.00043670862,0.00007676965,0.00044775268,0.004692278,0.001219236,0.0039835023],"genre_scores_gemma":[0.9502819,0.0030683957,0.041235343,0.00029037744,0.000020528541,0.00031818025,0.002746463,0.00023314799,0.0018056748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996221,0.000059810893,0.00004892543,0.00008406685,0.00014187695,0.000043047854],"domain_scores_gemma":[0.99958366,0.00016220601,0.00011236433,0.00004812934,0.00005210105,0.000041552168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039272834,0.00094950746,0.00048645705,0.0009351595,0.00019724012,0.00049865496,0.00044106264,0.00049545115,0.0009631669],"category_scores_gemma":[0.00036416593,0.00029614056,0.00060708105,0.00066264695,0.00044973966,0.00020868701,0.00060587877,0.0006514023,0.00033728802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007686402,0.000044549757,0.00035297734,0.00006648621,0.000020888017,0.000112608446,0.000012354551,0.00043249317,0.9957319,0.00018922302,0.000032191343,0.002927383],"study_design_scores_gemma":[0.000020385918,0.00030414856,0.002611602,0.000007634562,0.00006698592,0.00038888695,0.00002929844,0.0012633255,0.99343055,0.00014063586,0.0017236171,0.000012999009],"about_ca_topic_score_codex":0.0013984805,"about_ca_topic_score_gemma":0.0021553976,"teacher_disagreement_score":0.0013984805,"about_ca_system_score_codex":0.000724007,"about_ca_system_score_gemma":0.00048202975,"threshold_uncertainty_score":0.005253017},"labels":[],"label_agreement":null},{"id":"W2027069545","doi":"10.1186/1471-2180-13-98","title":"Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cholesterol and Lipid Metabolism","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Gene duplication; Homology (biology); Transmembrane protein; ATP-binding cassette transporter; Monophyly; Sequence alignment; Genetics; SUPERFAMILY; Protein family; Computational biology; Integral membrane protein; Protein superfamily; Sequence (biology); Sequence homology; Membrane topology; Membrane protein; Phylogenetics; Evolutionary biology; Gene; Transmembrane domain; Transporter; Peptide sequence; Receptor; Membrane; Clade","score_opus":0.03647226152371567,"score_gpt":0.2506678664112966,"score_spread":0.21419560488758096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027069545","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957438,0.0010010885,0.0017094436,0.000074012765,0.0000056088325,0.00001457723,0.000055759345,0.000014330048,0.0013813091],"genre_scores_gemma":[0.9964521,0.0005925586,0.0022286677,0.00004001982,0.000013458722,0.000013110253,0.00027439286,0.000009468047,0.00037629632],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992623,0.0001660073,0.000063629246,0.00024220491,0.00012357374,0.0001424197],"domain_scores_gemma":[0.99881244,0.00033922604,0.00023107804,0.000078176825,0.00038353747,0.00015555504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010444522,0.00023892708,0.00036317817,0.0018481286,0.000998031,0.00083599397,0.00047349086,0.0008190821,0.0011665697],"category_scores_gemma":[0.0015118093,0.00016120296,0.0003013978,0.0013866395,0.00076276145,0.0009854753,0.0007009118,0.000684336,0.0004407323],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014659351,0.0004867929,0.55564564,0.00045908944,0.00026545022,0.0033115777,0.0061646528,0.003937091,0.30604586,0.011902329,0.00062552857,0.109690025],"study_design_scores_gemma":[0.00003688318,0.0007091766,0.930599,0.00008686088,0.00017457116,0.009673827,0.0027352693,0.011403708,0.021397747,0.006278614,0.01679894,0.000105391235],"about_ca_topic_score_codex":0.00039411624,"about_ca_topic_score_gemma":0.0003121765,"teacher_disagreement_score":0.0018481286,"about_ca_system_score_codex":0.0006129155,"about_ca_system_score_gemma":0.00029273276,"threshold_uncertainty_score":0.0055236816},"labels":[],"label_agreement":null},{"id":"W2035215035","doi":"10.1186/1471-2180-11-207","title":"Roles of RpoN in the resistance of Campylobacter jejuni under various stress conditions","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Iowa State University","keywords":"rpoN; Biology; Campylobacter jejuni; Microbiology; Campylobacteriosis; Sigma factor; Mutant; Flagellin; Bacteria; Genetics; Gene; Escherichia coli; Gene expression","score_opus":0.04267440955011691,"score_gpt":0.23432539460366109,"score_spread":0.19165098505354417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035215035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99658066,0.0009844418,0.001164372,0.00010034594,0.000023240003,0.000020428766,0.00017873915,0.00006533422,0.00088242133],"genre_scores_gemma":[0.99765164,0.0002149984,0.0011088679,0.000025458714,0.0000047598232,0.000020427642,0.0002580825,0.000011622115,0.00070418156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998493,0.000020757194,0.000015782147,0.000026676413,0.000050411538,0.000037121044],"domain_scores_gemma":[0.99977404,0.000027515842,0.00007456833,0.000021041189,0.000053021937,0.000049735976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015192115,0.00071545434,0.00022505126,0.0002652829,0.0001643601,0.00032233784,0.00034654487,0.0004184649,0.00095881283],"category_scores_gemma":[0.00018849778,0.00009767059,0.00027887197,0.00012331211,0.0002672302,0.00023632884,0.00034499067,0.000306889,0.00028468863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021569335,0.00005028442,0.0017079818,0.00006205549,0.0000062814747,0.0001896909,0.0000305971,0.000079564576,0.9957808,0.000041955664,0.000037256334,0.0017978193],"study_design_scores_gemma":[0.000018972733,0.00094033097,0.047164228,0.000028821076,0.000046950707,0.0013790515,0.00024745543,0.0015972963,0.94622433,0.0001264309,0.002203215,0.000023035958],"about_ca_topic_score_codex":0.0006478093,"about_ca_topic_score_gemma":0.0004207212,"teacher_disagreement_score":0.00095881283,"about_ca_system_score_codex":0.00025936984,"about_ca_system_score_gemma":0.00020296278,"threshold_uncertainty_score":0.0032075047},"labels":[],"label_agreement":null},{"id":"W2035523330","doi":"10.1186/1471-2180-12-15","title":"Lactobacillus rhamnosus GR-1 enhances NF-kappaB activation in Escherichia coli-stimulated urinary bladder cells through TLR4","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Magnus Bergvalls Stiftelse","keywords":"Lactobacillus rhamnosus; Biology; Microbiology; TLR4; Lactobacillus; Immune system; Probiotic; Escherichia coli; Cytokine; Lipopolysaccharide; Innate immune system; Proinflammatory cytokine; Inflammation; Immunology; Bacteria; Biochemistry","score_opus":0.027080764796826837,"score_gpt":0.23658275691459316,"score_spread":0.20950199211776632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035523330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99653625,0.0014623803,0.00072962116,0.00013506076,0.00003920987,0.000027570757,0.00029171875,0.000051643037,0.00072658254],"genre_scores_gemma":[0.99496824,0.00080436736,0.0018735215,0.00011661056,0.000020799453,0.00005939305,0.0006516814,0.000012939675,0.0014924727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962676,0.00012009861,0.00003911989,0.000032549797,0.00006714107,0.00011444327],"domain_scores_gemma":[0.9997677,0.000052778785,0.00005617298,0.000027991764,0.000029591087,0.000065771266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034833004,0.00049096055,0.0005151156,0.0002884777,0.00017374863,0.0003998339,0.00020968648,0.00035003872,0.0018913382],"category_scores_gemma":[0.00022509633,0.00016512384,0.0005005145,0.00023422357,0.00027659477,0.00020993753,0.0003188827,0.00066337327,0.0005884607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041570864,0.00009872886,0.00014268789,0.00010647328,0.000005596551,0.000040976123,0.000024978877,0.000045362187,0.9985771,0.00001363699,0.000029088027,0.00049959833],"study_design_scores_gemma":[0.000065515465,0.0017129126,0.005871433,0.000043864315,0.00002693777,0.00024237405,0.00013656158,0.0008273819,0.98972696,0.00003863813,0.0012970195,0.000010487944],"about_ca_topic_score_codex":0.00040212588,"about_ca_topic_score_gemma":0.0004758237,"teacher_disagreement_score":0.0018913382,"about_ca_system_score_codex":0.00025191062,"about_ca_system_score_gemma":0.0002846631,"threshold_uncertainty_score":0.0063271523},"labels":[],"label_agreement":null},{"id":"W2036963247","doi":"10.1186/1471-2180-10-106","title":"The HP0256 gene product is involved in motility and cell envelope architecture of Helicobacter pylori","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Science Foundation Ireland; Natural Sciences and Engineering Research Council of Canada; Wellcome Trust","keywords":"Flagellum; Biology; Flagellin; Bacterial adhesin; Helicobacter pylori; Motility; Cell biology; Mutant; Chaperone (clinical); Cell envelope; Gene; Microbiology; Genetics; Virulence; Escherichia coli","score_opus":0.012781347639620206,"score_gpt":0.23220015271018749,"score_spread":0.21941880507056727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036963247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9845851,0.0018230916,0.0045944965,0.00017399495,0.0001276669,0.00005073117,0.0063232863,0.00030933882,0.0020122756],"genre_scores_gemma":[0.97948486,0.00068402593,0.0050695078,0.000097498705,0.00003453349,0.00004478356,0.009217164,0.00010337944,0.0052642473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999858,0.000010552734,0.000016735614,0.00005025156,0.000048692476,0.000015702743],"domain_scores_gemma":[0.99980277,0.000021590351,0.00007419662,0.000023544979,0.000029648338,0.000048227655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082488434,0.00086345273,0.0003719807,0.00028928358,0.0002701364,0.0004105966,0.0002559613,0.00050648674,0.0032711972],"category_scores_gemma":[0.00020828466,0.0001961299,0.00049730163,0.00039836246,0.000265918,0.00016704208,0.0004608758,0.0003878616,0.0019290652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023860819,0.000026972577,0.0015863702,0.00013420085,0.000010030643,0.00042277196,0.000021255904,0.00006131747,0.9946254,0.0000595749,0.00021681271,0.0025967439],"study_design_scores_gemma":[0.00006946018,0.00047403004,0.1508386,0.0000784227,0.00013988226,0.004653609,0.00012364515,0.0022828905,0.8260954,0.00019953422,0.0150086805,0.000035935976],"about_ca_topic_score_codex":0.0007141025,"about_ca_topic_score_gemma":0.0003379912,"teacher_disagreement_score":0.0032711972,"about_ca_system_score_codex":0.0002688212,"about_ca_system_score_gemma":0.00016096259,"threshold_uncertainty_score":0.010943234},"labels":[],"label_agreement":null},{"id":"W2037046509","doi":"10.1186/1471-2180-11-78","title":"Distribution and characterization of ampicillin- and tetracycline-resistant Escherichia colifrom feedlot cattle fed subtherapeutic antimicrobials","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Tetracycline; Ampicillin; Antimicrobial; Escherichia coli; Parasitology; Feedlot; Microbiology; Antibiotic resistance; Veterinary medicine; Distribution (mathematics); Antibiotics; Animal science; Genetics; Zoology; Medicine","score_opus":0.03069265040871974,"score_gpt":0.24263117472330442,"score_spread":0.21193852431458468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037046509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995179,0.00006845916,0.00012771183,0.0000060939583,0.0000015712043,0.000005749057,0.00017085281,0.0000023493583,0.00009925626],"genre_scores_gemma":[0.9975713,0.00018025389,0.0005574904,0.000031233107,0.000005945063,0.000018851833,0.00093376724,0.0000032727723,0.00069798273],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976057,0.000023544342,0.000022492839,0.00007217752,0.00006450618,0.000056691537],"domain_scores_gemma":[0.9996995,0.000057498633,0.00010004184,0.00001650255,0.000060770868,0.00006576816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013925646,0.00024069173,0.00025429577,0.00037048408,0.00022894044,0.00041478933,0.00016042432,0.00035194654,0.0004935168],"category_scores_gemma":[0.000290274,0.00012833891,0.00016734273,0.00029091485,0.00020080016,0.00016544298,0.00014589721,0.00033109993,0.0001833491],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007094433,0.0002010555,0.057177875,0.000052960433,0.000018222832,0.000110549794,0.00016808591,0.0000535509,0.9388292,0.000014236339,0.000029109982,0.002635625],"study_design_scores_gemma":[0.000018461416,0.0019651307,0.8406918,0.0000129680375,0.000053643435,0.0007203683,0.00041156038,0.0003561361,0.15529162,0.000013528886,0.00045515024,0.00000953826],"about_ca_topic_score_codex":0.0030000985,"about_ca_topic_score_gemma":0.0032964179,"teacher_disagreement_score":0.0030000985,"about_ca_system_score_codex":0.00031989027,"about_ca_system_score_gemma":0.00020670235,"threshold_uncertainty_score":0.0059652925},"labels":[],"label_agreement":null},{"id":"W2037779253","doi":"10.1186/1471-2180-8-86","title":"Rapid identification of Brucella isolates to the species level by real time PCR based single nucleotide polymorphism (SNP) analysis","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Waterloo; Department for Environment, Food and Rural Affairs, UK Government","keywords":"Biology; Brucella; Genetics; Single-nucleotide polymorphism; Phylogenetic tree; Genotype; Brucellosis; 16S ribosomal RNA; Polymerase chain reaction; Microbiology; Gene; Virology","score_opus":0.11106413180366906,"score_gpt":0.2960969668180273,"score_spread":0.18503283501435822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037779253","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8242172,0.0016325997,0.1667574,0.00024754813,0.000113771675,0.00064601336,0.0027001118,0.00082136836,0.0028639848],"genre_scores_gemma":[0.7077891,0.0010617549,0.2833294,0.00037251346,0.000050401715,0.00085155654,0.0042801397,0.000093797484,0.0021713127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983419,0.00037820733,0.0001523377,0.00050741306,0.000494113,0.00012600474],"domain_scores_gemma":[0.9981931,0.0007743512,0.00044124233,0.0001302305,0.00038651266,0.0000746529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010248707,0.0005955237,0.0004570627,0.0010171274,0.00016539551,0.0005627794,0.0005185545,0.0007246417,0.001173056],"category_scores_gemma":[0.0017564377,0.00031125557,0.00048529668,0.0005072448,0.0005714238,0.00036212476,0.000361019,0.00083765725,0.0013159002],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013058138,0.00008350674,0.0043928795,0.00010227304,0.000015092787,0.00007559185,0.0000968745,0.00017698082,0.98809516,0.00007851604,0.00007265551,0.0066798744],"study_design_scores_gemma":[0.000029387842,0.0013211925,0.02963148,0.0000682272,0.0000988282,0.0010616095,0.0001699749,0.0059275385,0.9586354,0.0002985267,0.002714697,0.000043115015],"about_ca_topic_score_codex":0.00014925149,"about_ca_topic_score_gemma":0.00037555333,"teacher_disagreement_score":0.001173056,"about_ca_system_score_codex":0.00015961335,"about_ca_system_score_gemma":0.0001766555,"threshold_uncertainty_score":0.005420089},"labels":[],"label_agreement":null},{"id":"W2039661922","doi":"10.1186/1471-2180-13-161","title":"Aerobic transformation of cadmium through metal sulfide biosynthesis in photosynthetic microorganisms","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Queen's University","keywords":"Chlamydomonas reinhardtii; Sulfite; Cadmium; Metal toxicity; Sulfide; Biochemistry; Sulfate; Photosynthesis; Sulfur; Biology; Sulfite reductase; Environmental chemistry; Microorganism; Phototroph; Chemistry; Bacteria; Enzyme","score_opus":0.009288581329448993,"score_gpt":0.21746507720023608,"score_spread":0.2081764958707871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039661922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620396,0.00051643397,0.0019113299,0.0000815804,0.000022038255,0.00003537412,0.00030297937,0.000050422645,0.0008758667],"genre_scores_gemma":[0.9931358,0.0004402411,0.0043912367,0.000026998783,0.00000668154,0.000024159079,0.0005641638,0.00001598216,0.0013947749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997042,0.00004256999,0.00003548525,0.00008985644,0.00008654721,0.00004133733],"domain_scores_gemma":[0.9998671,0.000030057428,0.000027662276,0.00002362959,0.000027043754,0.000024452369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002559686,0.00050795625,0.0003436515,0.00015990812,0.00024927934,0.0005177919,0.00031211282,0.0003374934,0.00042471572],"category_scores_gemma":[0.00021370123,0.00013553319,0.00033560037,0.00024780468,0.00019790565,0.00026007483,0.0005690343,0.0004926076,0.0002868798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009255127,0.00005642636,0.00068983744,0.00005976186,0.000005607523,0.000053502947,0.00003669122,0.00009120089,0.9975327,0.000041335315,0.000021221442,0.0013192046],"study_design_scores_gemma":[0.000018324585,0.00043396238,0.0057053645,0.000008994366,0.00002547037,0.00018218804,0.00008911814,0.0010964202,0.99121606,0.000059399117,0.0011552179,0.000009459253],"about_ca_topic_score_codex":0.0026990268,"about_ca_topic_score_gemma":0.0028558823,"teacher_disagreement_score":0.0026990268,"about_ca_system_score_codex":0.00057468924,"about_ca_system_score_gemma":0.00045422194,"threshold_uncertainty_score":0.0053666234},"labels":[],"label_agreement":null},{"id":"W2039985444","doi":"10.1186/1471-2180-8-64","title":"Virulence studies of Enterobacter sakazakiiisolates associated with a neonatal intensive care unit outbreak","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Trent University; Nottingham Trent University","keywords":"Outbreak; Biology; Meningitis; Microbiology; Enterobacter cloacae; Virulence; Neonatal meningitis; Neonatal intensive care unit; Enterocolitis; Ventriculitis; Bacteremia; Virology; Sepsis; Immunology; Enterobacteriaceae; Internal medicine; Medicine; Antibiotics; Escherichia coli; Pediatrics","score_opus":0.03949767207618098,"score_gpt":0.2927349965885888,"score_spread":0.2532373245124078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039985444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99956304,0.00009844931,0.00007818694,0.0000137172965,0.0000046414684,0.000015954616,0.000053936306,0.000001662826,0.00017035191],"genre_scores_gemma":[0.9987398,0.00022914156,0.00034051755,0.000029612778,0.0000107207925,0.000024766929,0.00047742308,0.0000027015417,0.00014535345],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999228,0.00015976831,0.00010907842,0.0000903535,0.00020275537,0.00021000685],"domain_scores_gemma":[0.9989851,0.00018552052,0.0002739367,0.000062970954,0.00033001622,0.0001625036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007250976,0.00057599077,0.00035229485,0.00086249725,0.00041713996,0.0005607677,0.00032223368,0.00042351417,0.0005634097],"category_scores_gemma":[0.0021589273,0.00019708935,0.00036681135,0.00075223227,0.00024638785,0.00035230778,0.000635779,0.00048057796,0.00019351149],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015686853,0.00065471,0.75957376,0.00025098686,0.00012368028,0.006576239,0.0021543594,0.00048869435,0.22130209,0.00010572189,0.00025311203,0.00694802],"study_design_scores_gemma":[0.000045851095,0.0031967522,0.9176332,0.00007708961,0.00013529933,0.008563454,0.0037978196,0.0010492143,0.0638954,0.000083150015,0.001497152,0.000025754274],"about_ca_topic_score_codex":0.002707774,"about_ca_topic_score_gemma":0.0013786415,"teacher_disagreement_score":0.002707774,"about_ca_system_score_codex":0.0005078633,"about_ca_system_score_gemma":0.0004814714,"threshold_uncertainty_score":0.005384028},"labels":[],"label_agreement":null},{"id":"W2039996756","doi":"10.1186/1471-2180-11-148","title":"Characterization of surface proteins of Cronobacter muytjensii using monoclonal antibodies and MALDI-TOF Mass spectrometry","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Yarmouk University; Jordan University of Science and Technology; University of Manitoba; Purdue University","keywords":"Cronobacter; Epitope; Monoclonal antibody; Microbiology; Cronobacter sakazakii; Biology; Epitope mapping; Bacteria; Antigen; Antibody; Enterobacteriaceae; Escherichia coli; Molecular biology; Biochemistry; Immunology; Enterobacter","score_opus":0.03076881631720151,"score_gpt":0.2543413700193853,"score_spread":0.22357255370218376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039996756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925437,0.0014492712,0.0045448416,0.00006971625,0.000022758482,0.000045449447,0.000565923,0.000058200792,0.0007001778],"genre_scores_gemma":[0.97107375,0.0014358341,0.024127007,0.00011140741,0.000017933613,0.000069700494,0.001997903,0.000024585575,0.0011418944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988294,0.00001021884,0.000013517392,0.000026728498,0.00004488201,0.000021687942],"domain_scores_gemma":[0.99984705,0.000017221284,0.00005256486,0.00000862117,0.000055393793,0.000019050136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016453415,0.00044377422,0.0001840699,0.0005576212,0.00013008117,0.00030295606,0.00020498245,0.00036462204,0.00032962058],"category_scores_gemma":[0.00019545224,0.00009374277,0.00025437918,0.00033936716,0.000120719495,0.00022043815,0.00018142241,0.00025783872,0.00022809005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020429397,0.000008820417,0.0009671562,0.000027423594,0.0000026880468,0.000035575515,0.000010456539,0.000015105512,0.9977174,0.000008169292,0.000011162351,0.0011755808],"study_design_scores_gemma":[0.00001218721,0.000444388,0.09640135,0.000031897514,0.000064251515,0.0012940128,0.0001755806,0.0017118786,0.8959644,0.000056384535,0.003830718,0.000012840479],"about_ca_topic_score_codex":0.0006924978,"about_ca_topic_score_gemma":0.00071300706,"teacher_disagreement_score":0.0006924978,"about_ca_system_score_codex":0.0001733485,"about_ca_system_score_gemma":0.00012000493,"threshold_uncertainty_score":0.0013769269},"labels":[],"label_agreement":null},{"id":"W2041066333","doi":"10.1186/1471-2180-10-258","title":"Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal University Hospital; Saskatchewan Research Council (Canada); University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Proteome; Genome; Bacterial genome size; Bacterial taxonomy; Horizontal gene transfer; Evolutionary biology; Genomics; Genetics; Gene; Alphaproteobacteria; Phylogenetics; Bacteria; Computational biology; 16S ribosomal RNA","score_opus":0.012994247478731388,"score_gpt":0.2209411178886899,"score_spread":0.20794687040995852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041066333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945767,0.000728737,0.0017253053,0.000016708194,0.0000055358814,0.00003873378,0.0021818462,0.000031371397,0.0006949606],"genre_scores_gemma":[0.9790911,0.00055089075,0.008954819,0.00003526846,0.000012305822,0.00008582213,0.010911399,0.000033246288,0.00032514305],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99928325,0.00011671309,0.00008603701,0.00025390292,0.00016579956,0.000094273724],"domain_scores_gemma":[0.99840766,0.00049085985,0.00050885935,0.0001346756,0.00031677744,0.00014118917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068973674,0.0005755633,0.00048569398,0.0032114584,0.00041477825,0.00066629675,0.0003348907,0.00047913668,0.0010125755],"category_scores_gemma":[0.0018283153,0.00015007518,0.0005233899,0.0032964777,0.00037037794,0.00049517566,0.0008221309,0.00031766927,0.0005589616],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011768301,0.0002965132,0.16802411,0.0009087007,0.00028334462,0.0001871749,0.0008760154,0.0006996377,0.792981,0.00015873501,0.00014695198,0.03426094],"study_design_scores_gemma":[0.00002951636,0.001050567,0.91387534,0.0000628772,0.0003781436,0.0018031509,0.0007896017,0.0024325121,0.075506724,0.00032799866,0.0037116504,0.00003195265],"about_ca_topic_score_codex":0.0005895411,"about_ca_topic_score_gemma":0.00053267746,"teacher_disagreement_score":0.0032114584,"about_ca_system_score_codex":0.00021074837,"about_ca_system_score_gemma":0.00022578998,"threshold_uncertainty_score":0.003647685},"labels":[],"label_agreement":null},{"id":"W2042401000","doi":"10.1186/1471-2180-10-115","title":"Production of enterodiol from defatted flaxseeds through biotransformation by human intestinal bacteria","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Phytoestrogen effects and research","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Peking University Health Science Center; Peking University; National Natural Science Foundation of China","keywords":"Enterolactone; Biology; Biotransformation; Enterococcus faecium; Food science; Microbiology; Feces; Bifidobacterium longum; Antibiotics; Bifidobacterium; Fermentation; Lactobacillus; Biochemistry; Genetics","score_opus":0.01865663153261938,"score_gpt":0.2981741309546778,"score_spread":0.27951749942205845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042401000","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946122,0.0004901613,0.003346134,0.00008117895,0.000018412864,0.000076446246,0.00048122447,0.000038318765,0.0008559092],"genre_scores_gemma":[0.9764994,0.0009065014,0.017775165,0.000081190985,0.000011880106,0.00009051447,0.0019181066,0.000028409075,0.0026888838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997851,0.000034443205,0.000023691193,0.00006385639,0.000049574664,0.00004331024],"domain_scores_gemma":[0.99989665,0.000021345724,0.000026572732,0.0000151811855,0.000025025103,0.000015148904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021516206,0.0005743073,0.000281511,0.00018190587,0.00015291727,0.00034614155,0.0001834668,0.00027058387,0.0005150167],"category_scores_gemma":[0.00021827473,0.00009722799,0.0003673144,0.00020764004,0.000121082994,0.00022266187,0.00045827488,0.00032383573,0.0002919256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000878935,0.00003987092,0.00081843877,0.00005154064,0.0000052522987,0.00006675549,0.000031646672,0.00003919304,0.9968136,0.000012310076,0.00002079471,0.002012619],"study_design_scores_gemma":[0.000014522465,0.0009386255,0.012506423,0.000026685668,0.000040813364,0.00032995502,0.00018952855,0.00078818813,0.9834067,0.000030177462,0.0017170464,0.000011331375],"about_ca_topic_score_codex":0.0014056949,"about_ca_topic_score_gemma":0.0016272306,"teacher_disagreement_score":0.0014056949,"about_ca_system_score_codex":0.000145127,"about_ca_system_score_gemma":0.0002535796,"threshold_uncertainty_score":0.0027950406},"labels":[],"label_agreement":null},{"id":"W2042450029","doi":"10.1186/1471-2180-12-124","title":"Identification and recombinant expression of anandamide hydrolyzing enzyme from Dictyostelium discoideum","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cannabis and Cannabinoid Research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Steacie Institute for Molecular Sciences","funders":"","keywords":"Dictyostelium discoideum; Biology; Recombinant DNA; Identification (biology); Enzyme; Anandamide; Dictyostelium; Mycetozoa; Cell biology; Biochemistry; Computational biology; Gene; Ecology; Receptor; Cannabinoid receptor","score_opus":0.01653583024665074,"score_gpt":0.27897501219304444,"score_spread":0.2624391819463937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042450029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783051,0.0048295786,0.010318031,0.00039291178,0.00009575948,0.00014241313,0.0037922456,0.000118555436,0.0020054332],"genre_scores_gemma":[0.94936186,0.0027404453,0.026157804,0.00010297561,0.000029985164,0.00010984405,0.015536462,0.000043658703,0.005916889],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998313,0.000017151746,0.00002643106,0.00003840477,0.00005240232,0.00003414036],"domain_scores_gemma":[0.99986684,0.000034434393,0.00003258125,0.000021429752,0.000025905632,0.000018817293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021472614,0.00039577056,0.00033480898,0.00036684386,0.00013230249,0.0003016801,0.00025528108,0.00037046304,0.0004204307],"category_scores_gemma":[0.000274973,0.00013336811,0.0003925719,0.00044833438,0.00016333617,0.00017693467,0.00027242408,0.0005140932,0.00057892874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043385862,0.000016722017,0.00031217447,0.00006943839,0.000004266439,0.00005884545,0.0000144888645,0.000046837627,0.9982362,0.00004632207,0.000036687907,0.0011146257],"study_design_scores_gemma":[0.000036959947,0.0002989378,0.009548824,0.000023011806,0.00004796045,0.0006892507,0.00006588829,0.0010565014,0.9783952,0.000065733584,0.009760317,0.0000114225995],"about_ca_topic_score_codex":0.0012941117,"about_ca_topic_score_gemma":0.0014220251,"teacher_disagreement_score":0.0012941117,"about_ca_system_score_codex":0.0005521354,"about_ca_system_score_gemma":0.00032675397,"threshold_uncertainty_score":0.004006028},"labels":[],"label_agreement":null},{"id":"W2043019177","doi":"10.1186/s12866-015-0400-1","title":"Faecalibacterium prausnitzii prevents physiological damages in a chronic low-grade inflammation murine model","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":320,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"European Regional Development Fund; Crohn's and Colitis Foundation of Canada","keywords":"Faecalibacterium prausnitzii; Dysbiosis; Inflammation; Immunology; Gut flora; Biology; Colitis; Intestinal permeability; Proinflammatory cytokine; Cytokine","score_opus":0.03705124390841613,"score_gpt":0.2934390091115464,"score_spread":0.2563877652031303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043019177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991484,0.0039721373,0.002376605,0.0002484521,0.00012428855,0.000113356546,0.00037267176,0.0001634819,0.0011449255],"genre_scores_gemma":[0.9898634,0.002666766,0.0029206716,0.00014674362,0.000047370664,0.00012911444,0.0005692598,0.000020023714,0.0036367313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976355,0.00003569944,0.000019195802,0.0000422357,0.00006932942,0.0000699125],"domain_scores_gemma":[0.9997359,0.000019250561,0.00009877417,0.000022419363,0.000028559223,0.00009504483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025835718,0.0008338391,0.0006370458,0.0006021905,0.00018629858,0.00029290863,0.00033439748,0.00061481964,0.0010360695],"category_scores_gemma":[0.00014575261,0.00019005509,0.00032601965,0.00020484316,0.00039704292,0.00028340012,0.00027053384,0.0012467437,0.00027298255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014431246,0.00072311744,0.000393837,0.00014974034,0.000012613461,0.00008817206,0.000030699284,0.000073545496,0.9942986,0.000048613016,0.00006474633,0.0026732893],"study_design_scores_gemma":[0.000284312,0.02177246,0.010014147,0.0000666883,0.000099922996,0.00040735857,0.00011383901,0.0010023738,0.9625489,0.00010335428,0.0035709057,0.000015694186],"about_ca_topic_score_codex":0.0005514683,"about_ca_topic_score_gemma":0.0011333363,"teacher_disagreement_score":0.0010360695,"about_ca_system_score_codex":0.00020078867,"about_ca_system_score_gemma":0.0003632613,"threshold_uncertainty_score":0.00346601},"labels":[],"label_agreement":null},{"id":"W2044663634","doi":"10.1186/s12866-014-0281-8","title":"Extracellular excystation and development of Cryptosporidium: tracing the fate of oocysts within Pseudomonas aquatic biofilm systems","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Australian Research Council","keywords":"Biofilm; Cryptosporidium; Biology; Microbiology; Extracellular polymeric substance; Cryptosporidium parvum; Confocal laser scanning microscopy; Microorganism; Bacteria","score_opus":0.01731686586102777,"score_gpt":0.23369634107538734,"score_spread":0.21637947521435957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044663634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996411,0.0003153273,0.0021408747,0.000027647358,0.0000030366025,0.000024561332,0.00022482019,0.00002105082,0.0008316809],"genre_scores_gemma":[0.9929442,0.00043358805,0.005001054,0.000022683531,0.0000033179035,0.00002930192,0.000240772,0.0000067311166,0.0013184262],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99991643,0.000006881128,0.0000039891966,0.00002157504,0.000029380835,0.00002188391],"domain_scores_gemma":[0.99990106,0.000022306676,0.000025463898,0.000005617894,0.000026819116,0.000018654355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117191135,0.00017113694,0.00009228428,0.00019709874,0.00021197488,0.00023480202,0.0001280668,0.00025031273,0.00062234857],"category_scores_gemma":[0.000119951255,0.00009177703,0.00009328264,0.00016203173,0.00015062801,0.00021165679,0.00027207288,0.0003491394,0.0001624358],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027675425,0.000013402618,0.0028071883,0.00004130971,0.0000017723347,0.00003490254,0.00007448516,0.0000471967,0.995297,0.000031862786,0.000017855089,0.0016053322],"study_design_scores_gemma":[0.000010972128,0.0006288427,0.13914768,0.000029407547,0.000020613077,0.0003980384,0.0004346979,0.0030401177,0.8541816,0.00014766562,0.0019477732,0.00001268076],"about_ca_topic_score_codex":0.0020898231,"about_ca_topic_score_gemma":0.0022497794,"teacher_disagreement_score":0.0020898231,"about_ca_system_score_codex":0.00019159913,"about_ca_system_score_gemma":0.00022767005,"threshold_uncertainty_score":0.004155278},"labels":[],"label_agreement":null},{"id":"W2046751600","doi":"10.1186/1471-2180-9-118","title":"Polymorphism and selection of rpoS in pathogenic Escherichia coli","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Mutant; Escherichia coli; Biology; Verocytotoxin; Pathogenic Escherichia coli; Microbiology; Gene; VTEC; Genetics; Phenotype; Enterobacteriaceae; Mutation; Gene expression","score_opus":0.00577268627162239,"score_gpt":0.20575737390248658,"score_spread":0.1999846876308642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046751600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979056,0.000193643,0.0013494485,0.00003636571,0.0000051035895,0.000013751743,0.0001504037,0.00001903301,0.00032667583],"genre_scores_gemma":[0.9976476,0.0001269605,0.0014651376,0.000023942897,0.0000052906157,0.000017467386,0.00040702708,0.000015653244,0.000291029],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99951017,0.000098395496,0.000057042824,0.00008074148,0.00018039027,0.000073254836],"domain_scores_gemma":[0.9994294,0.00013480803,0.0001960942,0.000075186894,0.000081495375,0.00008295838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002450611,0.00049916044,0.00033645172,0.00060303626,0.00018983793,0.00036926335,0.0003209977,0.00033514015,0.0007478487],"category_scores_gemma":[0.0006139907,0.00017437233,0.00023381368,0.00039043112,0.00029888737,0.0001800898,0.0005155499,0.00041000324,0.00034806115],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015467897,0.000050099618,0.0063138064,0.00003895594,0.000010649757,0.00016401814,0.000039878156,0.00007081484,0.990396,0.000044506098,0.00002287382,0.002693671],"study_design_scores_gemma":[0.000038150643,0.0012061605,0.13170908,0.00003289563,0.00009917613,0.008057668,0.00035524843,0.0012607136,0.85510683,0.0002463049,0.0018547908,0.00003307582],"about_ca_topic_score_codex":0.0002839432,"about_ca_topic_score_gemma":0.00044269484,"teacher_disagreement_score":0.0007478487,"about_ca_system_score_codex":0.0001491105,"about_ca_system_score_gemma":0.00018079471,"threshold_uncertainty_score":0.0025018454},"labels":[],"label_agreement":null},{"id":"W2047672249","doi":"10.1186/1471-2180-12-274","title":"Assessment of virulence diversity of methicillin-resistant Staphylococcus aureus strains with a Drosophila melanogaster infection model","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Calgary Laboratory Services; Alberta Health Services; Calgary General Hospital; University of Calgary","funders":"Fondation pour la Recherche Médicale; Alberta Health Services","keywords":"Virulence; Biology; Drosophila melanogaster; Staphylococcus aureus; Microbiology; Melanogaster; Pathogenicity island; Staphylococcal infections; Innate immune system; Virulence factor; Genetics; Gene; Virology; Immune system; Bacteria","score_opus":0.029947070628969487,"score_gpt":0.26344258529227427,"score_spread":0.2334955146633048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047672249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906916,0.0010722582,0.0040822965,0.000094964074,0.000028510776,0.0001771971,0.0016286462,0.00007521216,0.002149237],"genre_scores_gemma":[0.97939014,0.001283469,0.011422995,0.00010069486,0.000009948458,0.00033524632,0.0027834487,0.000033843582,0.0046401806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996401,0.00005674653,0.000049419123,0.00009163891,0.00011092115,0.00005109655],"domain_scores_gemma":[0.9996413,0.000067982226,0.00011896349,0.000033292734,0.00006248808,0.00007603432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002550434,0.0007380627,0.00026684525,0.0009754555,0.00029748783,0.00032517378,0.00035412816,0.0005308783,0.001096341],"category_scores_gemma":[0.00016712317,0.0002001016,0.00047562714,0.00026203113,0.00020803617,0.00022795504,0.00038864178,0.0007120123,0.00027585632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080059835,0.0000998144,0.0019220887,0.00007270252,0.000014176837,0.00007884539,0.000048044676,0.00010914158,0.9964104,0.00010083479,0.00006893617,0.000994866],"study_design_scores_gemma":[0.000035696412,0.002278831,0.038277593,0.000041087573,0.000105542,0.0007695017,0.00024232965,0.003603115,0.9508611,0.00015441151,0.0035892217,0.00004154253],"about_ca_topic_score_codex":0.001735792,"about_ca_topic_score_gemma":0.002537966,"teacher_disagreement_score":0.001735792,"about_ca_system_score_codex":0.00056865637,"about_ca_system_score_gemma":0.0002450319,"threshold_uncertainty_score":0.004125893},"labels":[],"label_agreement":null},{"id":"W2048172305","doi":"10.1186/1471-2180-9-232","title":"Evolutionary relationships among salivarius streptococci as inferred from multilocus phylogenies based on 16S rRNA-encoding, recA, secA, and secY gene sequences","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Université Laval; University of British Columbia; Canadian Institute for Advanced Research","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Génome Québec; Canadian Institutes of Health Research; Université Laval","keywords":"Biology; Genetics; Phylogenetic tree; Streptococcus salivarius; Sister group; Phylogenetics; Gene; Microbiology; Bacteria; Clade; Streptococcus","score_opus":0.04212310128581113,"score_gpt":0.2924018247804855,"score_spread":0.25027872349467434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048172305","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667114,0.0002964373,0.0024469914,0.000022564613,0.0000049134037,0.000021523298,0.00025094685,0.000022609504,0.00026298178],"genre_scores_gemma":[0.992814,0.00015885376,0.0058063585,0.000018999754,0.0000046815403,0.000019229108,0.0010855845,0.000015116493,0.00007715947],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99953747,0.00016189872,0.00004842683,0.00011548353,0.00007331926,0.00006355615],"domain_scores_gemma":[0.998565,0.0007307883,0.00033851963,0.00006780071,0.00013003263,0.00016792813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013636404,0.0004966046,0.00049973844,0.0023926538,0.00067222305,0.0010936263,0.00040164505,0.00051621516,0.0008344909],"category_scores_gemma":[0.0023667838,0.00023585791,0.00075042766,0.0014155599,0.00035725834,0.0004498659,0.0005478515,0.00062445505,0.00040161636],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002546471,0.00038298557,0.7803074,0.0005746888,0.0014355361,0.0013998514,0.0022389335,0.015432171,0.14890385,0.0013214572,0.00040856175,0.04504822],"study_design_scores_gemma":[0.00011136316,0.00085452193,0.9082198,0.00023818479,0.0007388032,0.0019086902,0.0026468246,0.06756243,0.012423349,0.0020046004,0.0031890813,0.00010240683],"about_ca_topic_score_codex":0.00074428716,"about_ca_topic_score_gemma":0.0009808111,"teacher_disagreement_score":0.0023926538,"about_ca_system_score_codex":0.0003839715,"about_ca_system_score_gemma":0.0004498923,"threshold_uncertainty_score":0.007211685},"labels":[],"label_agreement":null},{"id":"W2048259673","doi":"10.1186/1471-2180-7-106","title":"Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institutes of Health; Joint Genome Institute; Gordon and Betty Moore Foundation; U.S. Department of Energy","keywords":"Biology; Proteobacteria; Phylogenomics; Phylogenetics; Microbiology; Genetics; Bacteria; 16S ribosomal RNA","score_opus":0.01483499814602081,"score_gpt":0.20956947088166877,"score_spread":0.19473447273564795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048259673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854188,0.002052341,0.0038683657,0.00013318898,0.000010527543,0.000039180315,0.0066273343,0.00007819367,0.0017720618],"genre_scores_gemma":[0.96562,0.0012921316,0.010261458,0.00006977673,0.000016428465,0.00007271543,0.02145167,0.000049775674,0.0011660206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99977845,0.000030176714,0.000016011576,0.00006550831,0.000042670712,0.00006723976],"domain_scores_gemma":[0.9996468,0.00006158474,0.00012071847,0.000022435908,0.00007117542,0.000077340315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032651605,0.00046374134,0.00026074794,0.001722054,0.000398927,0.0005314803,0.00016234584,0.0002672106,0.0017831493],"category_scores_gemma":[0.00043497284,0.000105817955,0.0005659773,0.0017666919,0.0001631458,0.00030004885,0.00047871002,0.00041525898,0.00089277123],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001970861,0.00021769367,0.33430785,0.00072891684,0.00033683341,0.0004383692,0.00058075564,0.0016986394,0.5920862,0.00060175685,0.0012896578,0.06574244],"study_design_scores_gemma":[0.000033591565,0.00046745274,0.9423298,0.00009747509,0.0003258967,0.0017083755,0.0008654237,0.006831443,0.03622465,0.00081621855,0.010273864,0.000025671727],"about_ca_topic_score_codex":0.0007837654,"about_ca_topic_score_gemma":0.00067593786,"teacher_disagreement_score":0.0017831493,"about_ca_system_score_codex":0.00023934933,"about_ca_system_score_gemma":0.00027381015,"threshold_uncertainty_score":0.0059652925},"labels":[],"label_agreement":null},{"id":"W2050353266","doi":"10.1186/1471-2180-7-16","title":"Importance of c-Type cytochromes for U(VI) reduction by Geobacter sulfurreducens","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Radioactive element chemistry and processing","field":"Chemistry","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biological and Environmental Research; U.S. Department of Energy","keywords":"Geobacter sulfurreducens; Periplasmic space; Bacterial outer membrane; Cytochrome; Cytochrome c; Biology; Biochemistry; Desulfovibrio; Electron transport chain; Geobacter; Wild type; Mutant; Chemistry; Bacteria; Mitochondrion; Biofilm; Enzyme; Escherichia coli; Gene; Genetics","score_opus":0.017758086992471455,"score_gpt":0.27806299722948735,"score_spread":0.2603049102370159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050353266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983748,0.0005194386,0.0005281721,0.00007298471,0.000008532472,0.000016682636,0.00016017568,0.000027955002,0.0002910887],"genre_scores_gemma":[0.9985783,0.00016198184,0.0007703205,0.00001502595,0.0000027959834,0.000007751717,0.0003007019,0.00000622225,0.00015704193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997303,0.000043429834,0.00002590417,0.000038436065,0.00012064142,0.00004135071],"domain_scores_gemma":[0.99972445,0.00005043005,0.00005244116,0.000040630344,0.00007401174,0.00005803716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027037604,0.000506719,0.0003695273,0.00026142076,0.00022528399,0.0005067661,0.00039938246,0.0004960792,0.00035398756],"category_scores_gemma":[0.00035391047,0.000101839185,0.0003009613,0.00019766655,0.00032546313,0.0002008938,0.00029042517,0.00030714454,0.00012501929],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012248186,0.000045047043,0.0014560237,0.00007048213,0.000007687578,0.00007773321,0.000030298697,0.000066886605,0.996775,0.000051474442,0.000019375157,0.0012774338],"study_design_scores_gemma":[0.00002404222,0.000506635,0.036021594,0.00001644051,0.00005457576,0.0007040497,0.00026273026,0.0010432819,0.95975673,0.00012209368,0.0014726424,0.0000152222665],"about_ca_topic_score_codex":0.0039410284,"about_ca_topic_score_gemma":0.0032807323,"teacher_disagreement_score":0.0039410284,"about_ca_system_score_codex":0.00044283987,"about_ca_system_score_gemma":0.00044023243,"threshold_uncertainty_score":0.007836163},"labels":[],"label_agreement":null},{"id":"W2053620536","doi":"10.1186/1471-2180-12-70","title":"RND type efflux pump system MexAB-OprM of pseudomonas aeruginosa selects bacterial languages, 3-oxo-acyl-homoserine lactones, for cell-to-cell communication","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Colorado State University","keywords":"Quorum sensing; Autoinducer; Biology; Efflux; Homoserine; Pseudomonas aeruginosa; Microbiology; Mutant; Cell biology; Complementation; Bacteria; Biochemistry; Biofilm; Gene; Genetics","score_opus":0.010291007113798442,"score_gpt":0.23820538703929262,"score_spread":0.22791437992549418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053620536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888911,0.0011482927,0.0076002325,0.00032910545,0.00003774787,0.000056035467,0.00059872825,0.0002721854,0.0010665926],"genre_scores_gemma":[0.98917985,0.00053143885,0.0061243013,0.000099810415,0.000010799714,0.000075806805,0.001315438,0.000038983948,0.0026234298],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997658,0.000044350116,0.000023053166,0.000038948718,0.00009107355,0.000036799287],"domain_scores_gemma":[0.9998247,0.00003190594,0.000057271154,0.00002292626,0.00002191772,0.00004122121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014956277,0.00059601915,0.00034207047,0.00028527848,0.00014844234,0.00026371787,0.00026401976,0.00032413568,0.00091906096],"category_scores_gemma":[0.00026291676,0.00015232063,0.00022506565,0.0001605452,0.00024273984,0.00018373165,0.00043006137,0.0004962847,0.00067273097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016754024,0.000010210029,0.00021306201,0.000025396808,0.0000022971988,0.000051944993,0.0000048359657,0.000015774021,0.9990295,0.00003608575,0.000016828213,0.0005772434],"study_design_scores_gemma":[0.000016941345,0.00021331184,0.007277587,0.000009916995,0.000017858354,0.0014110553,0.000042330932,0.0018951941,0.9866927,0.00007556163,0.0023371654,0.000010376925],"about_ca_topic_score_codex":0.00053794455,"about_ca_topic_score_gemma":0.00046749224,"teacher_disagreement_score":0.00091906096,"about_ca_system_score_codex":0.00030488844,"about_ca_system_score_gemma":0.00027531455,"threshold_uncertainty_score":0.0030745864},"labels":[],"label_agreement":null},{"id":"W2054534837","doi":"10.1186/1471-2180-12-248","title":"Lateral gene transfer of an ABC transporter complex between major constituents of the human gut microbiome","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint Mary's University; Canadian Bioethics Society; Dalhousie University","funders":"Canadian Institutes of Health Research; Genome Atlantic; Canada Research Chairs","keywords":"Biology; Microbiome; Human microbiome; Phylogenetics; Horizontal gene transfer; Evolutionary biology; Metagenomics; Phylogenetic tree; Genetics; Operon; Gene; Ecology; Escherichia coli","score_opus":0.03150815671357557,"score_gpt":0.28444282711289093,"score_spread":0.2529346703993154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054534837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918316,0.0006668027,0.0060301647,0.00033698397,0.000024559851,0.000031833166,0.00018290197,0.000058814694,0.0008364301],"genre_scores_gemma":[0.99375385,0.00023338663,0.004762193,0.00010718776,0.000015339485,0.000017572807,0.00029991736,0.000019339861,0.0007913822],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995598,0.00006941836,0.000022840914,0.00014173289,0.00015040897,0.000055765075],"domain_scores_gemma":[0.99941564,0.00010526225,0.00021166484,0.00006673281,0.00009958685,0.00010106197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035131988,0.0002529619,0.0002540096,0.0004615425,0.0003554544,0.0007611872,0.00019601756,0.0005677969,0.0018549734],"category_scores_gemma":[0.0011392816,0.00015615186,0.0004116874,0.00037533804,0.00035187963,0.00040355694,0.0008405961,0.00051693973,0.0006175275],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030400898,0.000061888044,0.03092931,0.00014593719,0.00007050421,0.00055173796,0.00029391746,0.00019296474,0.9560761,0.0010924833,0.00026983477,0.010011246],"study_design_scores_gemma":[0.00009818295,0.0010736655,0.430788,0.00015720144,0.00031064797,0.008434284,0.0018877446,0.015345896,0.5217174,0.0032343632,0.01688263,0.00006997567],"about_ca_topic_score_codex":0.0008197598,"about_ca_topic_score_gemma":0.0005624539,"teacher_disagreement_score":0.0018549734,"about_ca_system_score_codex":0.00045350852,"about_ca_system_score_gemma":0.00032577763,"threshold_uncertainty_score":0.006205559},"labels":[],"label_agreement":null},{"id":"W2060171150","doi":"10.1186/1471-2180-9-16","title":"Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Institute for Advanced Research","funders":"Tula Foundation; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research; National Science Foundation","keywords":"Biology; Clade; Ultrastructure; Phylogenetics; Parasitology; Zoology; Bacteria; Evolutionary biology; Gene; Anatomy; Paleontology; Genetics","score_opus":0.005702855940834114,"score_gpt":0.20284396529187945,"score_spread":0.19714110935104534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060171150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990771,0.00012869168,0.00022832377,0.000013686603,0.000001590531,0.000006833092,0.00011975747,0.0000048036977,0.00041917825],"genre_scores_gemma":[0.99833363,0.0001099092,0.000837493,0.00002469894,0.0000038529706,0.00000872107,0.00037731632,0.0000028135917,0.00030153553],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999175,0.0000036175925,0.0000061597684,0.000039571547,0.000017822622,0.000015267282],"domain_scores_gemma":[0.9997621,0.000022640248,0.000075427204,0.0000166325,0.000070499525,0.000052648997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008138829,0.00017827589,0.00013312035,0.00066350633,0.00036058764,0.0005408167,0.00024525324,0.00037383626,0.00043633982],"category_scores_gemma":[0.00018055955,0.00012926891,0.0001125581,0.00040550323,0.0002947727,0.00026713035,0.00051534525,0.00020447162,0.00017175061],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013386131,0.000026716303,0.105646074,0.00005625325,0.000015415419,0.00018179044,0.00069278316,0.00009682756,0.8885619,0.00008612597,0.00003719737,0.0044649513],"study_design_scores_gemma":[0.000007308656,0.000114730195,0.9841822,0.000012468609,0.00002196235,0.0006292532,0.00075367646,0.0006389904,0.012292517,0.000058082413,0.0012807327,0.000008054018],"about_ca_topic_score_codex":0.0045346674,"about_ca_topic_score_gemma":0.0063187904,"teacher_disagreement_score":0.0045346674,"about_ca_system_score_codex":0.00028471195,"about_ca_system_score_gemma":0.00022522062,"threshold_uncertainty_score":0.009016514},"labels":[],"label_agreement":null},{"id":"W2061205266","doi":"10.1186/s12866-014-0305-4","title":"Saccharomyces cerevisiae biofilm tolerance towards systemic antifungals depends on growth phase","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Danmarks Tekniske Universitet; University of Toronto","keywords":"Biology; Biofilm; Saccharomyces cerevisiae; Microbiology; Parasitology; Yeast; Zoology; Bacteria; Genetics","score_opus":0.022589086020498583,"score_gpt":0.29805068955502756,"score_spread":0.275461603534529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061205266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963272,0.0012874521,0.0013040979,0.00004722609,0.000010873971,0.00001169066,0.0003731624,0.000039257804,0.0005989718],"genre_scores_gemma":[0.99705815,0.00057863304,0.0013166029,0.000031240004,0.0000039259917,0.00001751834,0.00047548648,0.000017155207,0.0005013855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999063,0.000012296479,0.00001300382,0.000021782784,0.0000327394,0.000013877363],"domain_scores_gemma":[0.99984586,0.000038625643,0.000040004372,0.000022253644,0.000034272292,0.000018916417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010105349,0.00026517088,0.00018254945,0.00011629134,0.00007475635,0.00026220083,0.00014279154,0.0001570412,0.0005838981],"category_scores_gemma":[0.00013835827,0.00009129085,0.00018083228,0.00009638866,0.000105850144,0.00011436499,0.00017626953,0.00033358426,0.00020721581],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004969837,0.000016459473,0.00035500148,0.00002367907,0.0000024986991,0.000015300593,0.0000070786245,0.000027410159,0.99876285,0.000019633033,0.000018828468,0.0007017101],"study_design_scores_gemma":[0.000012671538,0.00034107128,0.015118775,0.000014153104,0.000022657312,0.00027918274,0.000038670023,0.0010669206,0.98213744,0.000051896845,0.0009079721,0.000008516334],"about_ca_topic_score_codex":0.0007716494,"about_ca_topic_score_gemma":0.00071078725,"teacher_disagreement_score":0.0007716494,"about_ca_system_score_codex":0.0001693024,"about_ca_system_score_gemma":0.00014305538,"threshold_uncertainty_score":0.0019533038},"labels":[],"label_agreement":null},{"id":"W2062124868","doi":"10.1186/1471-2180-13-128","title":"Passive maternal exposure to environmental microbes selectively modulates the innate defences of chicken egg white by increasing some of its antibacterial activities","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Animal health and immunology","field":"Veterinary","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institut National de la Recherche Agronomique; Agence Nationale de la Recherche; European Commission; University of Ottawa","keywords":"Biology; Microbiology; Innate immune system; Antimicrobial; Antimicrobial peptides; Listeria monocytogenes; Egg white; Staphylococcus aureus; Lysozyme; Salmonella; Streptococcus agalactiae; Yolk; Escherichia coli; Proteases; Bacteria; Immune system; Food science; Immunology; Enzyme; Streptococcus; Biochemistry","score_opus":0.013890473184463317,"score_gpt":0.2433949170247805,"score_spread":0.22950444384031718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062124868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99880373,0.0005651785,0.00024683875,0.000036642658,0.000008140059,0.000005426417,0.000047280944,0.000009281145,0.0002775264],"genre_scores_gemma":[0.9983543,0.0003159899,0.00035375863,0.000042717464,0.000008197616,0.000018694938,0.000076757504,0.0000052385944,0.0008244048],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987566,0.000022341239,0.0000073606584,0.000045719957,0.000018790435,0.00003006299],"domain_scores_gemma":[0.99981433,0.00003122471,0.00006602295,0.000018181005,0.000019604173,0.000050704562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113488735,0.0003054089,0.00020601762,0.0001291988,0.000094338655,0.00025783083,0.0001503783,0.00021642784,0.0010418786],"category_scores_gemma":[0.00016884149,0.00009784567,0.00010846392,0.00004790671,0.00032091234,0.000125412,0.00017626533,0.00037209687,0.0001149679],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003498942,0.000036975085,0.0017298345,0.000051776933,0.000005377327,0.000048203634,0.00003932008,0.000010455892,0.996525,0.000023282872,0.00001564616,0.0011642931],"study_design_scores_gemma":[0.000035967874,0.0046949866,0.18091853,0.000047909598,0.0000802041,0.00045207472,0.0003312031,0.0004643126,0.81061673,0.000092252485,0.0022525387,0.000013312138],"about_ca_topic_score_codex":0.0003758311,"about_ca_topic_score_gemma":0.0006745501,"teacher_disagreement_score":0.0010418786,"about_ca_system_score_codex":0.00021999574,"about_ca_system_score_gemma":0.0001425676,"threshold_uncertainty_score":0.0034854412},"labels":[],"label_agreement":null},{"id":"W2064079765","doi":"10.1186/1471-2180-13-24","title":"Multilocus sequence analysis of Treponema denticolastrains of diverse origin","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Hong Kong; Agency for Science, Technology and Research; Duke-NUS Medical School","keywords":"Biology; Treponema denticola; Genetics; Phylogenetic tree; Multilocus sequence typing; Treponema; Phylogenetics; Clade; Gene; Sequence analysis; Monophyly; Genotype; Bacteria; Virology","score_opus":0.06860707152583301,"score_gpt":0.34469657450643304,"score_spread":0.27608950298060003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064079765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981622,0.00022480525,0.0008911997,0.000010666483,0.0000033737865,0.000020555615,0.0004845771,0.00001140506,0.00019127195],"genre_scores_gemma":[0.99457943,0.00012532198,0.003322948,0.0000141311775,0.000006219358,0.000020957588,0.0018003759,0.000011315824,0.00011942442],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999673,0.000039438837,0.000036209756,0.00009438842,0.000101309975,0.000055623936],"domain_scores_gemma":[0.9990344,0.00021124438,0.00031551355,0.000049928825,0.0002842528,0.00010463759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043879534,0.0003273539,0.0003362412,0.0015192442,0.00029928688,0.0005015064,0.00029772616,0.00029576052,0.0005989621],"category_scores_gemma":[0.0013349112,0.00010828247,0.00044830661,0.0011605169,0.00018348832,0.00017757269,0.00044208654,0.0002976782,0.00023344014],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012423756,0.00024266838,0.14036599,0.00036221472,0.0002832674,0.00066665176,0.0009174788,0.0007083263,0.83457863,0.00013738303,0.0001402896,0.020354677],"study_design_scores_gemma":[0.00006650638,0.0011304502,0.8424316,0.00006615802,0.0005432788,0.004463425,0.0009776603,0.004976866,0.14140128,0.00017016837,0.00372478,0.000047800942],"about_ca_topic_score_codex":0.0016073649,"about_ca_topic_score_gemma":0.0014130285,"teacher_disagreement_score":0.0016073649,"about_ca_system_score_codex":0.00027851277,"about_ca_system_score_gemma":0.00024055959,"threshold_uncertainty_score":0.003196001},"labels":[],"label_agreement":null},{"id":"W2064987038","doi":"10.1186/1471-2180-12-214","title":"Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; BIOCAP Canada; Genome Canada","keywords":"Ferredoxin; Clostridium thermocellum; Biochemistry; Biology; Metabolic engineering; Oxidoreductase; Metabolism; Cellobiose; Formate dehydrogenase; Proteome; Cofactor; Enzyme","score_opus":0.013929774261605318,"score_gpt":0.24321742698242796,"score_spread":0.22928765272082263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064987038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99236566,0.0011234796,0.0027487336,0.000060629238,0.000016583868,0.000032419175,0.003028211,0.00005484964,0.0005695353],"genre_scores_gemma":[0.97794193,0.0015326584,0.009484541,0.0001112258,0.000019762303,0.000106162464,0.009359205,0.000044271055,0.001400242],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998505,0.000013560853,0.000011482964,0.000044524157,0.000042923006,0.000037030713],"domain_scores_gemma":[0.9998324,0.000024812807,0.000036826626,0.000011129023,0.00005986628,0.000034947912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024896485,0.0004633207,0.00030164327,0.00054881943,0.0002153094,0.00035783998,0.00015861413,0.00025017626,0.00047861264],"category_scores_gemma":[0.00028618946,0.00012313106,0.00028548556,0.00086519954,0.00014211521,0.00020235949,0.00020481249,0.00025757728,0.0002039599],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009340349,0.000011082819,0.00060672226,0.00003439132,0.0000047020562,0.000014353932,0.000011806558,0.00002899433,0.99825996,0.000007702629,0.000020033285,0.0009067765],"study_design_scores_gemma":[0.000012837699,0.0004064897,0.14907399,0.000019920162,0.000080713515,0.0005500115,0.000104462924,0.0023385521,0.8456125,0.00007195239,0.0017077824,0.000020790221],"about_ca_topic_score_codex":0.0010370674,"about_ca_topic_score_gemma":0.0009905292,"teacher_disagreement_score":0.0010370674,"about_ca_system_score_codex":0.00028088127,"about_ca_system_score_gemma":0.00026041377,"threshold_uncertainty_score":0.0020620227},"labels":[],"label_agreement":null},{"id":"W2065068621","doi":"10.1186/1471-2180-12-27","title":"Identification of the para-nitrophenol catabolic pathway, and characterization of three enzymes involved in the hydroquinone pathway, in pseudomonas sp. 1-7","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Natural Science Foundation of China","keywords":"Biology; Fosmid; Dioxygenase; Pseudomonas; Biochemistry; Hydroquinone; Enzyme; Catabolism; Oxygenase; Monooxygenase; Reductase; Rhodococcus rhodochrous; Gene cluster; Metabolic pathway; Gene; Molecular biology; Cytochrome P450; Bacteria; Rhodococcus; Genetics; Metagenomics","score_opus":0.01823840554422893,"score_gpt":0.21206584763384473,"score_spread":0.1938274420896158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065068621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948179,0.0005922936,0.0024050644,0.00015186412,0.000016779417,0.000067426576,0.0012894068,0.000051360003,0.0006078949],"genre_scores_gemma":[0.97269464,0.0008747932,0.009805478,0.0001470586,0.000027394377,0.00020010292,0.012261683,0.000056552282,0.003932343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971384,0.000021720763,0.00001993867,0.000073133706,0.00009185373,0.00007946292],"domain_scores_gemma":[0.9996735,0.000084638974,0.000064886226,0.0000312963,0.00007531191,0.00007048124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016668695,0.0007069919,0.00042132783,0.00058335025,0.00018332094,0.00034106526,0.00035653292,0.0004871756,0.0007671619],"category_scores_gemma":[0.00033500086,0.00017989501,0.0006369587,0.00039464352,0.0002889181,0.00030712024,0.00038121687,0.00074102345,0.0006960144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008005747,0.00008956294,0.0009221393,0.00006481669,0.0000064503706,0.0000663584,0.000033568653,0.00005249121,0.99675447,0.000031449417,0.000020413125,0.0018781562],"study_design_scores_gemma":[0.00005900589,0.00092595303,0.058557305,0.000029949364,0.0001015116,0.0015621614,0.0003519408,0.002056731,0.9336664,0.00020933914,0.0024526212,0.000027094022],"about_ca_topic_score_codex":0.0020014646,"about_ca_topic_score_gemma":0.0012578532,"teacher_disagreement_score":0.0020014646,"about_ca_system_score_codex":0.00048525498,"about_ca_system_score_gemma":0.00058276614,"threshold_uncertainty_score":0.0039796233},"labels":[],"label_agreement":null},{"id":"W2066141393","doi":"10.1186/1471-2180-9-224","title":"Classification of Myoviridae bacteriophages using protein sequence similarity","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":271,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Public Health Agency of Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Johns Hopkins University","keywords":"Myoviridae; Podoviridae; Biology; Subfamily; Horizontal gene transfer; Evolutionary biology; Type species; Genetics; Taxonomy (biology); Bacteriophage; Proteome; Computational biology; Genome; Gene; Zoology; Escherichia coli","score_opus":0.04721953854513583,"score_gpt":0.29100244759400046,"score_spread":0.24378290904886463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066141393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831291,0.0014709361,0.011330144,0.00012623986,0.000041070354,0.00012034397,0.0011114369,0.00014804256,0.0025226828],"genre_scores_gemma":[0.9602686,0.00057814555,0.03345273,0.00006156622,0.000034356297,0.00010762047,0.004868379,0.000034830795,0.00059372856],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997061,0.000044991397,0.000049042177,0.000069928494,0.000087828674,0.000042007603],"domain_scores_gemma":[0.9991879,0.00014959699,0.00021624958,0.0000651119,0.00020949055,0.00017159854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000688974,0.00034432247,0.00022782665,0.003172363,0.0005067685,0.0006952341,0.00038164866,0.0004470375,0.0011391975],"category_scores_gemma":[0.0009406579,0.00007736564,0.00037358116,0.0016546502,0.0003658578,0.00051324733,0.00053892354,0.00035623292,0.0007668345],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017587616,0.00043909895,0.21211365,0.001091204,0.00021751822,0.00059783296,0.0015245329,0.000952928,0.6692361,0.0030736537,0.0012326185,0.10776202],"study_design_scores_gemma":[0.00008425013,0.0013844721,0.8648769,0.0002773064,0.00026934216,0.005634818,0.0030574403,0.02149166,0.06606631,0.009146706,0.0276218,0.00008907809],"about_ca_topic_score_codex":0.00036168055,"about_ca_topic_score_gemma":0.00033569481,"teacher_disagreement_score":0.003172363,"about_ca_system_score_codex":0.0002610295,"about_ca_system_score_gemma":0.00039301993,"threshold_uncertainty_score":0.0038110018},"labels":[],"label_agreement":null},{"id":"W2067566372","doi":"10.1186/1471-2180-7-42","title":"Indole is an inter-species biofilm signal mediated by SdiA","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":466,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Army Research Office; Institute of Genetics; National Institute of Biomedical Imaging and Bioengineering; National Institutes of Health; Madurai Kamaraj University; Keio University; University of Connecticut","keywords":"Biofilm; Quorum sensing; Indole test; Microbiology; Biology; Mutant; Homoserine; Motility; Escherichia coli; Tryptophanase; Swarming motility; Extracellular polymeric substance; Pseudomonas aeruginosa; Bacteria; Biochemistry; Gene; Cell biology; Genetics","score_opus":0.013717013756184109,"score_gpt":0.23280145352898485,"score_spread":0.21908443977280073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067566372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937686,0.0006413287,0.003934137,0.0000987226,0.000021926757,0.000018334229,0.0004360465,0.00008589094,0.000994947],"genre_scores_gemma":[0.9947937,0.00023200511,0.0028864543,0.000049988266,0.000007084943,0.00001807722,0.0007289746,0.000018987415,0.0012647983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998204,0.000014745014,0.000012189774,0.000041499512,0.00007399753,0.00003718478],"domain_scores_gemma":[0.999818,0.000023105567,0.00006457901,0.00001581498,0.000040976796,0.00003747372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009021834,0.00042412526,0.00021127009,0.0002246855,0.00015311966,0.00033735283,0.00020947625,0.00024626454,0.0008111641],"category_scores_gemma":[0.00010995906,0.00011968493,0.00025507135,0.00013698683,0.00018434865,0.00014907256,0.00032372863,0.00039746214,0.0003265827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016946047,0.0000059882204,0.0002296563,0.000011346991,9.535493e-7,0.000013306675,0.0000033593435,0.000007499323,0.999461,0.000016635122,0.000010683407,0.00022272239],"study_design_scores_gemma":[0.0000057233706,0.00009566802,0.014076256,0.0000062288204,0.00001024833,0.00016773985,0.000034569417,0.00097610697,0.9835992,0.000040299543,0.0009831765,0.000004787572],"about_ca_topic_score_codex":0.00084915425,"about_ca_topic_score_gemma":0.0010441233,"teacher_disagreement_score":0.00084915425,"about_ca_system_score_codex":0.000368187,"about_ca_system_score_gemma":0.00027127384,"threshold_uncertainty_score":0.0027136207},"labels":[],"label_agreement":null},{"id":"W2068045710","doi":"10.1186/1471-2180-7-69","title":"Involvement of the YneS/YgiH and PlsX proteins in phospholipid biosynthesis in both Bacillus subtilis and Escherichia coli","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Institute of Genetics; Rikkyo University; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Bacillus subtilis; Biology; Escherichia coli; Gene; Biochemistry; Biosynthesis; Phospholipid; Genome; Acyltransferase; Bacteria; Microbiology; Genetics","score_opus":0.00919038768064565,"score_gpt":0.21971136086634574,"score_spread":0.2105209731857001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068045710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766433,0.0006741684,0.00081397855,0.00004524096,0.000005059598,0.000011700679,0.00032173313,0.000027365548,0.00043644948],"genre_scores_gemma":[0.99488175,0.00039434168,0.0023093622,0.0000283588,0.0000032567723,0.000020663187,0.0012824541,0.000013885593,0.0010660322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986374,0.00002176147,0.000016852146,0.0000219219,0.000049231134,0.000026569729],"domain_scores_gemma":[0.99981743,0.000039294915,0.00006344259,0.000014357898,0.000025898276,0.000039694503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001472772,0.00043237154,0.0002117985,0.00027059705,0.0001627434,0.00033111032,0.00013888674,0.00027062363,0.00045735735],"category_scores_gemma":[0.00018860475,0.00017272038,0.00021875037,0.00018010406,0.0002184361,0.00018104173,0.00039813283,0.00024673907,0.00033417536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003067698,0.00003604784,0.0031055424,0.00007980063,0.00000893282,0.0001918351,0.00003712416,0.00019790194,0.9939756,0.00009978847,0.000024808349,0.001935848],"study_design_scores_gemma":[0.000044301276,0.0004170996,0.04662803,0.00002016224,0.000035538396,0.0012484118,0.00019428757,0.002261111,0.94719374,0.00008792633,0.0018538767,0.000015505599],"about_ca_topic_score_codex":0.0011801359,"about_ca_topic_score_gemma":0.000705486,"teacher_disagreement_score":0.0011801359,"about_ca_system_score_codex":0.00027406507,"about_ca_system_score_gemma":0.0003309033,"threshold_uncertainty_score":0.0023465157},"labels":[],"label_agreement":null},{"id":"W2069752037","doi":"10.1186/1471-2180-12-49","title":"Control of intestinal bacterial proliferation in regulation of lifespan in Caenorhabditis elegans","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; National Institutes of Health; Oklahoma Medical Research Foundation; University of Minnesota; University of British Columbia; Ellison Medical Foundation","keywords":"Biology; Caenorhabditis elegans; Longevity; Immunity; Phenotype; Innate immune system; Genetics; Genotype; Model organism; Immune system; Gene; Microbiology","score_opus":0.008839069831385956,"score_gpt":0.2187906737787876,"score_spread":0.20995160394740164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069752037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948731,0.0018464786,0.0016021888,0.00006967012,0.00002006063,0.000022838582,0.00040191822,0.000092983944,0.001070867],"genre_scores_gemma":[0.99588674,0.0007884079,0.0020992076,0.00004192361,0.0000052008572,0.000031181495,0.00017857076,0.000015149633,0.0009536261],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992204,0.000007848726,0.000008059457,0.00002410062,0.000021141945,0.000016812097],"domain_scores_gemma":[0.999816,0.00003455225,0.00006545032,0.000015399759,0.000021344513,0.0000473527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001371098,0.0003207643,0.0001468544,0.00024179628,0.00016787542,0.00021205835,0.00023367551,0.00022503387,0.00066956575],"category_scores_gemma":[0.00012442571,0.00011409877,0.00013513057,0.00007905394,0.00025923437,0.00013233416,0.00021973686,0.00030067828,0.00014605255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010889733,0.00002070573,0.00036943844,0.000037826663,0.000002083455,0.000019048452,0.000009266279,0.000077772434,0.99813914,0.000052576463,0.00002713206,0.0011360301],"study_design_scores_gemma":[0.000043577587,0.00049340737,0.032257162,0.00002562229,0.00003181389,0.00013313393,0.000042926822,0.0026039984,0.9616892,0.000128796,0.002533138,0.000017151766],"about_ca_topic_score_codex":0.0010989892,"about_ca_topic_score_gemma":0.0024582143,"teacher_disagreement_score":0.0010989892,"about_ca_system_score_codex":0.00044204207,"about_ca_system_score_gemma":0.00025458785,"threshold_uncertainty_score":0.0032072663},"labels":[],"label_agreement":null},{"id":"W2071154399","doi":"10.1186/1471-2180-11-204","title":"In Silico identification of pathogenic strains of Cronobacter from Biochemical data reveals association of inositol fermentation with pathogenicity","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Canada; University of Nottingham; Trent University; Nottingham Trent University","keywords":"Biology; Multilocus sequence typing; Cronobacter; In silico; Microbiology; Pathogenic bacteria; Virulence; Genetics; Cronobacter sakazakii; Pathogenicity island; Genotype; Gene; Enterobacter; Bacteria; Escherichia coli","score_opus":0.03191288806551224,"score_gpt":0.2774568124849892,"score_spread":0.24554392441947698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071154399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91861635,0.0002980898,0.0763354,0.00038808602,0.00004189263,0.00019649937,0.0015522153,0.000843286,0.0017281206],"genre_scores_gemma":[0.94348097,0.00012835841,0.051479377,0.00011515777,0.000018946792,0.00015516889,0.004143298,0.0000640261,0.00041484067],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99954695,0.00016788868,0.00004683593,0.00012298363,0.000068337344,0.000046896443],"domain_scores_gemma":[0.9985537,0.0010465111,0.00011425023,0.00006917887,0.00013911977,0.000077223995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012134047,0.00084384764,0.0007940385,0.0013203211,0.00062776846,0.0009905169,0.0010301601,0.0010529391,0.0012442874],"category_scores_gemma":[0.0034670692,0.00040259172,0.0016468726,0.00056098367,0.00034929838,0.0004191901,0.0006618444,0.00055379304,0.00031706292],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005266756,0.0003890157,0.060002092,0.00032829054,0.00046989342,0.00029042078,0.00013551662,0.9139474,0.007542011,0.0006316571,0.0006759966,0.015060943],"study_design_scores_gemma":[0.000015252087,0.000068482404,0.0046302844,0.000012152524,0.000055785455,0.000058421967,0.000030532945,0.9936871,0.0007485268,0.0005081957,0.00017691491,0.000008517544],"about_ca_topic_score_codex":0.005608015,"about_ca_topic_score_gemma":0.0061547738,"teacher_disagreement_score":0.005608015,"about_ca_system_score_codex":0.0005726121,"about_ca_system_score_gemma":0.0012442713,"threshold_uncertainty_score":0.011150777},"labels":[],"label_agreement":null},{"id":"W2072008853","doi":"10.1186/1471-2180-13-46","title":"Phylogenetic analysis of erythritol catabolic loci within theRhizobiales and Proteobacteria","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Erythritol; Proteobacteria; Evolutionary biology; Genetics; Phylogenetics; Computational biology; Microbiology; Bacteria; Gene","score_opus":0.01197406836477871,"score_gpt":0.19825005363317408,"score_spread":0.18627598526839537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072008853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99756694,0.00018522624,0.001087656,0.0000142664785,0.0000013013849,0.000022001666,0.0006594498,0.000015550655,0.0004476409],"genre_scores_gemma":[0.9912067,0.00016628962,0.0044920617,0.00002009411,0.000002432982,0.000035203862,0.003808515,0.000011346516,0.00025741046],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976605,0.000029632296,0.000020966307,0.00007406905,0.000053650096,0.00005566886],"domain_scores_gemma":[0.9995079,0.00010661013,0.00013779782,0.000042615615,0.00010664583,0.0000984083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030643292,0.00023606063,0.00025105797,0.0017454571,0.00044587927,0.0004073923,0.00018478738,0.00021983785,0.0008429495],"category_scores_gemma":[0.0005795098,0.00011779736,0.00029316146,0.0012383815,0.00016411814,0.0001737922,0.00040287085,0.000311984,0.0003009292],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093263405,0.00020930392,0.30216393,0.0003386195,0.00018023624,0.0005092121,0.0012265301,0.0012005229,0.6603916,0.00045899313,0.00018574148,0.032202583],"study_design_scores_gemma":[0.00002628946,0.00034741903,0.96652913,0.000080399186,0.00012929838,0.0013375313,0.0008009411,0.0037576836,0.022523731,0.0003462589,0.0041016317,0.000019847977],"about_ca_topic_score_codex":0.0012516988,"about_ca_topic_score_gemma":0.0013763288,"teacher_disagreement_score":0.0017454571,"about_ca_system_score_codex":0.0002544561,"about_ca_system_score_gemma":0.00028930785,"threshold_uncertainty_score":0.0028199553},"labels":[],"label_agreement":null},{"id":"W2073681519","doi":"10.1186/1471-2180-8-116","title":"Processing of predicted substrates of fungal Kex2 proteinases from Candida albicans, C. glabrata, Saccharomyces cerevisiae and Pichia pastoris","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Université Laval","keywords":"Biology; Pichia pastoris; Saccharomyces cerevisiae; Candida glabrata; Candida albicans; Corpus albicans; Biochemistry; Proteolysis; Yeast; Fungal protein; Mutant; Recombinant DNA; Systemic candidiasis; Enzyme; Microbiology; Gene","score_opus":0.01481299420031181,"score_gpt":0.22891896632360467,"score_spread":0.21410597212329285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073681519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923269,0.0022553224,0.0025538476,0.000059430655,0.000018487908,0.000033084005,0.0018466245,0.000048657574,0.000857625],"genre_scores_gemma":[0.9702747,0.00150961,0.011848646,0.000049280596,0.000009274131,0.00004824366,0.013094166,0.00004367139,0.0031224098],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998753,0.000014805909,0.000018491173,0.000030223646,0.000042393818,0.00001878484],"domain_scores_gemma":[0.9998983,0.000027105072,0.000023975594,0.000014367088,0.000021089812,0.00001520058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019260729,0.00070561975,0.00030238184,0.00027212713,0.000116179726,0.00041705032,0.00023017662,0.0002701529,0.0006807895],"category_scores_gemma":[0.00024393399,0.00014153183,0.0003713072,0.0003829357,0.00007984307,0.00018145997,0.00017979297,0.00036442676,0.0003049213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019079729,0.000023330367,0.0007326811,0.000110699766,0.000017882794,0.00010598889,0.00002083064,0.00015971826,0.99695826,0.000042406937,0.000048803846,0.0015887216],"study_design_scores_gemma":[0.000017722541,0.00017465401,0.016195737,0.000015076411,0.000054968332,0.0006722344,0.000050647213,0.0012959017,0.9785709,0.000042813255,0.0029015765,0.000007807826],"about_ca_topic_score_codex":0.0011089499,"about_ca_topic_score_gemma":0.0016069256,"teacher_disagreement_score":0.0011089499,"about_ca_system_score_codex":0.00024522867,"about_ca_system_score_gemma":0.00017362722,"threshold_uncertainty_score":0.0022774935},"labels":[],"label_agreement":null},{"id":"W2077389111","doi":"10.1186/1471-2180-9-27","title":"In vivo killing of Staphylococcus aureus using a light-activated antimicrobial agent","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Photodynamic Therapy Research Studies","field":"Medicine","cited_by":195,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ondine (Canada)","funders":"","keywords":"Staphylococcus aureus; Biology; Antimicrobial; Microbiology; In vivo; Parasitology; Staphylococcal infections; Bacteria; Biotechnology; Genetics","score_opus":0.02780954959584382,"score_gpt":0.31872822493382685,"score_spread":0.29091867533798305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077389111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921096,0.0032671182,0.0033867876,0.000063328815,0.00002556652,0.000036309393,0.0000704936,0.00004109198,0.0009997914],"genre_scores_gemma":[0.9900322,0.0018402821,0.005478262,0.000043788095,0.00001396774,0.000037595655,0.00015754027,0.000015646203,0.0023806791],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990106,0.00002490289,0.000006956983,0.000019547435,0.000026502063,0.000021067415],"domain_scores_gemma":[0.99988854,0.000043010852,0.000027751283,0.00001238728,0.000013752221,0.000014621793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020430422,0.00033255608,0.00013253116,0.00016690993,0.0000672359,0.00015298992,0.00018337864,0.0003634823,0.001265853],"category_scores_gemma":[0.00011476505,0.00008413264,0.00018570888,0.00006947982,0.00017075666,0.00017580406,0.00013689738,0.00033155637,0.00025082304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001257892,0.000059237846,0.00009346612,0.000044349836,0.0000029050557,0.000015467507,0.000008236129,0.000035111185,0.99826753,0.000017369433,0.000013018029,0.0013176048],"study_design_scores_gemma":[0.000022032194,0.0026420963,0.0011489413,0.0000088354855,0.000009768972,0.00012618929,0.000008420947,0.00026506986,0.99518555,0.000016878239,0.00056440476,0.0000018102761],"about_ca_topic_score_codex":0.00019346389,"about_ca_topic_score_gemma":0.00023199698,"teacher_disagreement_score":0.001265853,"about_ca_system_score_codex":0.00010391642,"about_ca_system_score_gemma":0.00009408442,"threshold_uncertainty_score":0.004234731},"labels":[],"label_agreement":null},{"id":"W2077543426","doi":"10.1186/1471-2180-9-40","title":"MyBASE: a database for genome polymorphism and gene function studies of Mycobacterium","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Beijing Municipal Science and Technology Commission; National Natural Science Foundation of China","keywords":"Biology; Genome; dbSNP; Genetics; Genomics; Virulence; Gene; Computational biology; Genome browser; Whole genome sequencing; Comparative genomics; Database; Single-nucleotide polymorphism; Genotype","score_opus":0.0547289215230419,"score_gpt":0.3290250862882897,"score_spread":0.27429616476524776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077543426","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009470717,0.008281175,0.023258245,0.000716155,0.00042563042,0.00045004522,0.9168451,0.034759067,0.005793829],"genre_scores_gemma":[0.007495761,0.002595711,0.027344516,0.00022116904,0.00007373922,0.00050537573,0.9587592,0.0020338334,0.00097074395],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985827,0.00018962673,0.00042406764,0.00039024602,0.00028685562,0.00012654942],"domain_scores_gemma":[0.9971933,0.00050013285,0.00073888135,0.00063908944,0.0004300623,0.00049856136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022037695,0.002723393,0.0033712587,0.009113598,0.0011590857,0.0036307494,0.0040061264,0.0023534948,0.018415557],"category_scores_gemma":[0.007847119,0.0013898112,0.001590692,0.011953459,0.00060796237,0.0048727184,0.004552011,0.0021262455,0.02568432],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029967816,0.00036442073,0.0102593135,0.024140496,0.00082460203,0.0018773761,0.0014814658,0.0028308788,0.0573141,0.009483881,0.6952215,0.19320516],"study_design_scores_gemma":[0.00040633022,0.00018971913,0.01303036,0.0012773183,0.00041518925,0.0011512365,0.00027117474,0.0021078547,0.007374247,0.006437646,0.9671784,0.00016056953],"about_ca_topic_score_codex":0.002860243,"about_ca_topic_score_gemma":0.0018980281,"teacher_disagreement_score":0.018415557,"about_ca_system_score_codex":0.0008981494,"about_ca_system_score_gemma":0.0041753803,"threshold_uncertainty_score":0.06160623},"labels":[],"label_agreement":null},{"id":"W2077831424","doi":"10.1186/1471-2180-7-79","title":"Classification of a moderately oxygen-tolerant isolate from baby faeces as Bifidobacterium thermophilum","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Microbiology; Bifidobacterium; Feces; Bacteria; Antimicrobial; Bifidobacterium longum; Actinomycetaceae; Lactobacillus; Genetics","score_opus":0.02675211611375979,"score_gpt":0.23125879950789782,"score_spread":0.20450668339413802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077831424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941122,0.0009917779,0.0023076385,0.0002741603,0.00006921513,0.0002777549,0.00086365297,0.00003756632,0.0010660866],"genre_scores_gemma":[0.9828414,0.0009403058,0.012083943,0.00023002698,0.00005546167,0.0001108665,0.0029943392,0.000027026483,0.00071672635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939764,0.00007828023,0.00015294302,0.00011498124,0.00014630407,0.00010982348],"domain_scores_gemma":[0.99902225,0.00018820874,0.00020030302,0.0000833064,0.00036756226,0.0001383665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004508542,0.00074952963,0.00046689544,0.0011833778,0.0004290146,0.0008176141,0.00043663647,0.00085551705,0.0005895613],"category_scores_gemma":[0.0011451915,0.0002563726,0.0006722778,0.0011304116,0.00030427138,0.00044061072,0.0007857827,0.00043148504,0.0006654451],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00077699503,0.0004164646,0.06590105,0.0007347025,0.0001000482,0.0041816416,0.0010995945,0.00023477443,0.90719295,0.000073097144,0.00039698044,0.018891796],"study_design_scores_gemma":[0.00013150396,0.0036510364,0.5615311,0.00051129225,0.0010565063,0.028604005,0.005688224,0.0035380146,0.38343376,0.00019066298,0.01157563,0.000088203764],"about_ca_topic_score_codex":0.0031908553,"about_ca_topic_score_gemma":0.0022132306,"teacher_disagreement_score":0.0031908553,"about_ca_system_score_codex":0.00027303773,"about_ca_system_score_gemma":0.0005342359,"threshold_uncertainty_score":0.006344557},"labels":[],"label_agreement":null},{"id":"W2078507659","doi":"10.1186/1471-2180-14-129","title":"In vitro synergism of fosfomycin and clarithromycin antimicrobials against methicillin-resistant Staphylococcus pseudintermedius","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Fosfomycin; Staphylococcus pseudintermedius; Biofilm; Clarithromycin; Antimicrobial; Microbiology; Biology; Antibiotics; Staphylococcal infections; Staphylococcus aureus; Staphylococcus; Bacteria","score_opus":0.009920666997970805,"score_gpt":0.23526881237321695,"score_spread":0.22534814537524614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078507659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895716,0.0063953074,0.0007949098,0.00016242462,0.00010327321,0.000095677206,0.00028760635,0.00001981269,0.0025695595],"genre_scores_gemma":[0.99385095,0.0020377904,0.0021694452,0.000049927366,0.000050232262,0.00006159494,0.00024723343,0.000008800315,0.0015239328],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943846,0.00019911985,0.00005994362,0.00007669488,0.00016200499,0.00006373133],"domain_scores_gemma":[0.9997272,0.000105099025,0.000049056678,0.00002117519,0.000054783286,0.0000426222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039925988,0.000430346,0.0004433797,0.00025994668,0.00017888975,0.00029735826,0.000262918,0.00036095822,0.0015612682],"category_scores_gemma":[0.00028439835,0.00015440136,0.00031556954,0.00020480195,0.00013274325,0.0002546393,0.0002691215,0.0003408403,0.00028064544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052112027,0.0002660519,0.0002658901,0.00021149738,0.000022749475,0.00004163697,0.000040130806,0.00015285728,0.99427265,0.000028664279,0.00009990553,0.0040767053],"study_design_scores_gemma":[0.000072785144,0.008302902,0.006826306,0.000032956446,0.00008682561,0.00019166149,0.00007535329,0.0010343494,0.98092616,0.000033653152,0.0024055503,0.000011416261],"about_ca_topic_score_codex":0.0008365247,"about_ca_topic_score_gemma":0.0013952665,"teacher_disagreement_score":0.0015612682,"about_ca_system_score_codex":0.00018022602,"about_ca_system_score_gemma":0.00027739047,"threshold_uncertainty_score":0.0052229166},"labels":[],"label_agreement":null},{"id":"W2079510204","doi":"10.1186/1471-2180-13-284","title":"Evaluation of infectious titer in a candidate HSV type 2 vaccine by a quantitative molecular approach","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur; Sanofi","keywords":"Biology; Parasitology; Virology; Titer; Infectious disease (medical specialty); Medical microbiology; Computational biology; Microbiology; Immunology; Virus; Zoology; Disease; Internal medicine","score_opus":0.024981499244666423,"score_gpt":0.31411736456318756,"score_spread":0.28913586531852115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079510204","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3723465,0.0056544095,0.6069937,0.00037070163,0.0004939873,0.0012105004,0.0038914592,0.0023921805,0.0066466564],"genre_scores_gemma":[0.5378218,0.0047069853,0.44101024,0.00040047316,0.00016746747,0.002106712,0.0038039726,0.00034870382,0.009633628],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9925498,0.0016092266,0.0003674264,0.0015436256,0.0036423295,0.0002877153],"domain_scores_gemma":[0.9959875,0.0015537181,0.000806894,0.0003742563,0.0012053131,0.00007227087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005832007,0.0016303493,0.0010668489,0.0017785812,0.0004541514,0.0016135313,0.0010695094,0.0013267214,0.0015712947],"category_scores_gemma":[0.003966488,0.0007215841,0.0011354354,0.0011566206,0.0013039681,0.0007707631,0.0006787844,0.0019272795,0.0013342858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006775688,0.00010068266,0.0012952832,0.00026054148,0.000032473137,0.000024445899,0.000114094066,0.00056311133,0.9905314,0.00022093594,0.00011668371,0.006672585],"study_design_scores_gemma":[0.0000051310362,0.000405766,0.002963042,0.0000343506,0.000068377674,0.00011652186,0.00005822374,0.0038379326,0.9905252,0.00016465707,0.0017799541,0.00004095841],"about_ca_topic_score_codex":0.0006691489,"about_ca_topic_score_gemma":0.0012130685,"teacher_disagreement_score":0.005832007,"about_ca_system_score_codex":0.0010263348,"about_ca_system_score_gemma":0.0007135294,"threshold_uncertainty_score":0.03084296},"labels":[],"label_agreement":null},{"id":"W2080055250","doi":"10.1186/1471-2180-9-45","title":"RpoE fine tunes expression of a subset of SsrB-regulated virulence factors in Salmonella enterica serovar Typhimurium","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research","keywords":"Biology; Salmonella enterica; Virulence; Salmonella; Microbiology; Serotype; Enterobacteriaceae; Parasitology; Virulence factor; Pathogenicity island; Bacteria; Genetics; Gene; Escherichia coli; Zoology","score_opus":0.022931157483970677,"score_gpt":0.22944455747631362,"score_spread":0.20651339999234294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080055250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99750817,0.00033423118,0.0014612695,0.00004021259,0.000010581615,0.000007577998,0.00009104258,0.00006461398,0.00048236037],"genre_scores_gemma":[0.99685895,0.00018976556,0.0016361732,0.000042549433,0.000004692624,0.000012905398,0.00021245015,0.000040117295,0.0010024955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984765,0.00002864163,0.0000132480045,0.000033011485,0.00003828224,0.000039237424],"domain_scores_gemma":[0.9998011,0.000038382743,0.000059461905,0.000032989814,0.000023049804,0.000045103687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015868312,0.00036297136,0.00019963583,0.00018653233,0.00006313918,0.00023971932,0.00012812384,0.00022420911,0.0007123133],"category_scores_gemma":[0.00021181545,0.00015531448,0.0001955637,0.00007491392,0.00020601292,0.00009714949,0.00022972036,0.00031236737,0.00032973374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003990292,0.0000091820575,0.0001691188,0.000009939985,0.0000014617053,0.000015296811,0.0000040607883,0.000023244334,0.9992543,0.0000076010647,0.00000644899,0.00045947847],"study_design_scores_gemma":[0.000022297241,0.0005470953,0.022413569,0.000010640539,0.0000219272,0.00054458337,0.000066603585,0.0012371922,0.9738573,0.00004463548,0.0012260554,0.000008046268],"about_ca_topic_score_codex":0.0002623481,"about_ca_topic_score_gemma":0.00045633008,"teacher_disagreement_score":0.0007123133,"about_ca_system_score_codex":0.00012752671,"about_ca_system_score_gemma":0.00010816708,"threshold_uncertainty_score":0.0023828745},"labels":[],"label_agreement":null},{"id":"W2085746422","doi":"10.1186/1471-2180-8-227","title":"Genomic analysis of bacteriophage ε34 of Salmonella entericaserovar Anatum (15+)","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Prophage; Biology; Genetics; Bacteriophage; Genome; Gene; Gene cluster; Temperateness; Comparative genomics; Lysogenic cycle; Salmonella; ORFS; Sequence analysis; Genomics; Peptide sequence; Escherichia coli; Bacteria; Open reading frame","score_opus":0.014786192426181923,"score_gpt":0.2260230501085127,"score_spread":0.21123685768233078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085746422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99686915,0.00017693793,0.0009489733,0.000029647965,0.000007406557,0.000036460522,0.0014720114,0.00003651331,0.00042301122],"genre_scores_gemma":[0.98192114,0.00021667905,0.0041251723,0.00005747685,0.000010093385,0.00003970756,0.012387368,0.000025891926,0.0012164717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987876,0.000013338161,0.000009744179,0.00004080839,0.000029329252,0.000027959224],"domain_scores_gemma":[0.9997818,0.000046236462,0.000071432834,0.000015023527,0.00003829929,0.000047318306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000089627014,0.0004483577,0.00016203221,0.0010438827,0.00021364889,0.00024905367,0.00021710181,0.00032160178,0.0011922603],"category_scores_gemma":[0.00030304678,0.00017779446,0.00046767094,0.00045883897,0.00018720512,0.00010706721,0.00033872618,0.00035818183,0.00051135075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013478732,0.000041589243,0.004116244,0.00007917159,0.00001367526,0.00015901712,0.00007169808,0.00005197262,0.9933924,0.000038940474,0.000029147855,0.001871442],"study_design_scores_gemma":[0.0000556154,0.0020011875,0.6134761,0.000055338587,0.00027855436,0.0038223104,0.0006307044,0.0012588238,0.37053907,0.00021620009,0.007626689,0.000039372062],"about_ca_topic_score_codex":0.0027233555,"about_ca_topic_score_gemma":0.0019180549,"teacher_disagreement_score":0.0027233555,"about_ca_system_score_codex":0.00021952891,"about_ca_system_score_gemma":0.0003374551,"threshold_uncertainty_score":0.005414963},"labels":[],"label_agreement":null},{"id":"W2086082189","doi":"10.1186/1471-2180-8-49","title":"Sequence variability of Campylobacter temperate bacteriophages","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Prophage; Biology; Campylobacter jejuni; Genetics; Campylobacter; Genome; Gene; Microbiology; Bacteriophage; Bacteria; Escherichia coli","score_opus":0.05376987157400684,"score_gpt":0.23905731397589597,"score_spread":0.18528744240188913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086082189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999201,0.00014889169,0.00028011258,0.00000690363,0.0000014705183,0.0000045310703,0.00012758028,0.0000043535715,0.00022511327],"genre_scores_gemma":[0.99886847,0.000058497757,0.00038188242,0.000008654445,0.0000031046343,0.000008839187,0.0005004482,0.0000029058783,0.00016714021],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997912,0.00002382097,0.00001811516,0.00007283484,0.000056873334,0.000037130998],"domain_scores_gemma":[0.999193,0.0002541048,0.00021205122,0.000041771014,0.00018238688,0.000116704345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002070361,0.0002220028,0.0001649701,0.0008327585,0.00020655418,0.00031283256,0.0001632471,0.00028747445,0.0010695704],"category_scores_gemma":[0.0007736838,0.00011096276,0.00012440875,0.0003749999,0.00022104662,0.00013370453,0.00021316968,0.00027537596,0.00023265842],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003494449,0.00004572677,0.045806322,0.000087564906,0.000029766188,0.000118025244,0.0003136723,0.00017183072,0.9478723,0.00011042566,0.000057767353,0.005037211],"study_design_scores_gemma":[0.0000313739,0.00080492813,0.840125,0.00004454289,0.00007267569,0.0024970325,0.00039060082,0.001443246,0.15215014,0.00020677624,0.002209721,0.000023956027],"about_ca_topic_score_codex":0.00069035526,"about_ca_topic_score_gemma":0.00073312555,"teacher_disagreement_score":0.0010695704,"about_ca_system_score_codex":0.0002806663,"about_ca_system_score_gemma":0.00014322258,"threshold_uncertainty_score":0.0035780668},"labels":[],"label_agreement":null},{"id":"W2087237443","doi":"10.1186/s12866-014-0298-z","title":"Construction of a mariner-based transposon vector for use in insertion sequence mutagenesis in selected members of the Rhizobiaceae","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Transposon mutagenesis; Transposable element; Genetics; Rhizobium leguminosarum; Genome; Mutagenesis; Sinorhizobium meliloti; Whole genome sequencing; Rhizobiaceae; Gene; Mutation; Mutant; Bacteria; Symbiosis","score_opus":0.023184231560996395,"score_gpt":0.20846857979413486,"score_spread":0.18528434823313847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087237443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67373717,0.0008612652,0.31105497,0.00034648398,0.00017034002,0.0027964145,0.00579629,0.002095177,0.003141868],"genre_scores_gemma":[0.6409341,0.0013545468,0.32587418,0.00016434047,0.000033771918,0.0015412371,0.020153597,0.0008172859,0.009126884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938965,0.000108424574,0.000092622366,0.000118749485,0.0002228975,0.000067703506],"domain_scores_gemma":[0.9996277,0.000085554544,0.00011669321,0.00006186457,0.000052132324,0.00005607338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063333515,0.0006405642,0.0005527649,0.0006818466,0.00023729996,0.00030562415,0.00072386867,0.0004169728,0.0013563172],"category_scores_gemma":[0.0004280397,0.0004114939,0.00064949394,0.0004909676,0.00030642882,0.00018160985,0.0005675347,0.0011886163,0.0015068803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055847475,0.00004744376,0.00016955787,0.0000573361,0.000010153602,0.00007359356,0.000026845508,0.000100343095,0.99629575,0.00012224342,0.000069368216,0.0029715498],"study_design_scores_gemma":[0.00004280042,0.00035926522,0.0025939501,0.000022066442,0.00005418194,0.0005834849,0.000030118708,0.002068506,0.9876715,0.00007475147,0.006479268,0.000020021946],"about_ca_topic_score_codex":0.0005226217,"about_ca_topic_score_gemma":0.0010032066,"teacher_disagreement_score":0.0013563172,"about_ca_system_score_codex":0.0003032572,"about_ca_system_score_gemma":0.00039945004,"threshold_uncertainty_score":0.0045372844},"labels":[],"label_agreement":null},{"id":"W2087415918","doi":"10.1186/1471-2180-8-149","title":"Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR","year":2008,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":313,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Vlaamse regering; Fonds Wetenschappelijk Onderzoek","keywords":"Vibrio harveyi; Quorum sensing; Virulence; Microbiology; Biology; Biofilm; Vibrio; Vibrio vulnificus; Vibrio Infections; Cinnamaldehyde; Biochemistry; Bacteria; Gene; Genetics","score_opus":0.012409751209522963,"score_gpt":0.22455225254881145,"score_spread":0.2121425013392885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087415918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98974437,0.006101008,0.0014480657,0.00014192947,0.000044249242,0.000047311518,0.00041851372,0.00007168496,0.0019829026],"genre_scores_gemma":[0.99350786,0.002102639,0.002068446,0.00010361986,0.000009436707,0.000023278599,0.00041115,0.000012339624,0.0017612259],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998915,0.000015029132,0.000009508379,0.000016270307,0.000041414372,0.000026254302],"domain_scores_gemma":[0.9998951,0.000021815305,0.000028747636,0.000009420823,0.000028988472,0.000015955777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009263775,0.000529205,0.0001838666,0.0002811701,0.0001093089,0.00021356373,0.0002877059,0.00032241837,0.0017752538],"category_scores_gemma":[0.00018775696,0.000095156494,0.00029370672,0.00017946737,0.00015111944,0.00018114345,0.00012810466,0.000340431,0.00017865113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011151751,0.000038547136,0.00014165447,0.00007948217,0.000010818335,0.000027923494,0.0000058925452,0.000108707034,0.9980868,0.00002299872,0.000020928035,0.0013447616],"study_design_scores_gemma":[0.000015254209,0.00090894575,0.0039089713,0.000011397711,0.000039275987,0.00009573241,0.00001829751,0.00029211395,0.9933042,0.00002228909,0.0013765268,0.000006949046],"about_ca_topic_score_codex":0.0020105517,"about_ca_topic_score_gemma":0.0040412643,"teacher_disagreement_score":0.0020105517,"about_ca_system_score_codex":0.00031241262,"about_ca_system_score_gemma":0.00025043305,"threshold_uncertainty_score":0.005938828},"labels":[],"label_agreement":null},{"id":"W2092678726","doi":"10.1186/1471-2180-13-116","title":"Human milk metagenome: a functional capacity analysis","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":214,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Institute of Nutrition, Metabolism and Diabetes; Ottawa Hospital Research Institute","keywords":"Biology; Metagenomics; Firmicutes; Population; Feces; Proteobacteria; Microbiology; Microbiome; Bacteria; 16S ribosomal RNA; Genetics; Gene","score_opus":0.04728290317547421,"score_gpt":0.27650292363130763,"score_spread":0.22922002045583342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092678726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97857726,0.0010645693,0.0036208876,0.00009832629,0.000010532881,0.00008805106,0.0154464515,0.00015442453,0.0009395509],"genre_scores_gemma":[0.9342224,0.0007875088,0.018097257,0.00009583561,0.00002079373,0.00018704028,0.0458008,0.00006249764,0.00072592],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997055,0.000033134147,0.000019908939,0.000084260246,0.00008670131,0.00007040785],"domain_scores_gemma":[0.9998222,0.00003246981,0.00003289036,0.000014100442,0.000064266555,0.000034097586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003708475,0.00059937127,0.00051148556,0.0016801546,0.0003506742,0.00061674404,0.00023446378,0.00038803596,0.0012075446],"category_scores_gemma":[0.00061417214,0.00013813931,0.00095232914,0.0017484347,0.00013814142,0.0002422543,0.00084361323,0.0002541077,0.00048912363],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015731386,0.0002581818,0.19360878,0.00087680155,0.00051437644,0.0005236562,0.00056353596,0.0027200095,0.7422367,0.00025953536,0.0012487362,0.05561668],"study_design_scores_gemma":[0.000073800016,0.0010281513,0.8248691,0.0001141893,0.0006100792,0.0018443337,0.0011336796,0.017741578,0.13465676,0.0005989617,0.017255273,0.000074059826],"about_ca_topic_score_codex":0.0031224845,"about_ca_topic_score_gemma":0.0019178194,"teacher_disagreement_score":0.0031224845,"about_ca_system_score_codex":0.00032294102,"about_ca_system_score_gemma":0.0004475464,"threshold_uncertainty_score":0.0062085986},"labels":[],"label_agreement":null},{"id":"W2095331995","doi":"10.1186/1471-2180-13-238","title":"Enterohepatic bacterial infections dysregulate the FGF15-FGFR4 endocrine axis","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fibroblast Growth Factor Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"FGF19; Biology; Enterohepatic circulation; Bile acid; Endocrine system; Internal medicine; Endocrinology; Cholesterol 7 alpha-hydroxylase; Fibroblast growth factor; Hormone; Receptor; Biochemistry; Medicine","score_opus":0.009147385234986835,"score_gpt":0.2366615767389061,"score_spread":0.22751419150391924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095331995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940381,0.0027412237,0.0015528962,0.00010852656,0.000024811045,0.000019358959,0.00021256537,0.00007119994,0.0012312676],"genre_scores_gemma":[0.99530894,0.001476498,0.0015856223,0.00006085779,0.000009560172,0.000021931526,0.00019486083,0.000013012389,0.0013286144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997626,0.000046857112,0.000021516347,0.000031993386,0.00006431086,0.00007268718],"domain_scores_gemma":[0.99984,0.000018146686,0.00007386643,0.000010015495,0.000021061689,0.00003681574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015681345,0.00045741576,0.00019774516,0.00028181958,0.00014189491,0.00033915075,0.0001262034,0.00036479745,0.001367622],"category_scores_gemma":[0.0002008084,0.00013338985,0.00026111462,0.00010977267,0.00032031263,0.00017416927,0.00038210154,0.0003782032,0.00025812624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027918865,0.000013362946,0.001524242,0.000045400513,0.0000073483693,0.00022579003,0.000024732937,0.000029771401,0.99620545,0.00006625806,0.000033301392,0.0015450548],"study_design_scores_gemma":[0.000040029823,0.00070623454,0.11434159,0.000039122788,0.000069577094,0.0015957941,0.0002793132,0.00081845885,0.8763153,0.00017507933,0.0056036585,0.000015798038],"about_ca_topic_score_codex":0.0008359847,"about_ca_topic_score_gemma":0.00085525453,"teacher_disagreement_score":0.001367622,"about_ca_system_score_codex":0.00043687585,"about_ca_system_score_gemma":0.00023654706,"threshold_uncertainty_score":0.004575193},"labels":[],"label_agreement":null},{"id":"W2095854757","doi":"10.1186/1471-2180-10-182","title":"Isolation of deoxynivalenol-transforming bacteria from the chicken intestines using the approach of PCR-DGGE guided microbial selection","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Trichothecene; Mycotoxin; Fusarium; Temperature gradient gel electrophoresis; Food science; Bacteria; Microbiology; Isolation (microbiology); Biotechnology; Microorganism; Vomitoxin; 16S ribosomal RNA; Botany; Zearalenone","score_opus":0.03177879260744069,"score_gpt":0.22730161062823928,"score_spread":0.1955228180207986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095854757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91516006,0.0013456682,0.07872391,0.00022633324,0.00008150988,0.000718995,0.00073150743,0.00020981467,0.0028022765],"genre_scores_gemma":[0.7741863,0.0019659726,0.21856593,0.00016228697,0.000022767652,0.00039239816,0.0019241102,0.0000682524,0.002711979],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995004,0.00006591429,0.000073116345,0.00016637101,0.00013417128,0.00006004518],"domain_scores_gemma":[0.99968195,0.00008497209,0.00008635236,0.00003489277,0.00008211363,0.000029685381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026984347,0.0007768395,0.0003447922,0.00051495805,0.00016404696,0.00037794656,0.00035726582,0.00043969392,0.00034094008],"category_scores_gemma":[0.00041772475,0.00020711981,0.00036022742,0.0003143918,0.00028685026,0.00022533619,0.0004323726,0.00049432984,0.00044980223],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032901906,0.000024594448,0.00074543204,0.000067198154,0.00000428214,0.000054732463,0.000041709285,0.000040862902,0.9961771,0.000019058225,0.000012050723,0.0027801432],"study_design_scores_gemma":[0.000008374162,0.00041952872,0.006727343,0.000026942791,0.000042161555,0.00064038485,0.00014380587,0.0010760134,0.9893885,0.000026255988,0.001489278,0.000011355249],"about_ca_topic_score_codex":0.00084156706,"about_ca_topic_score_gemma":0.0012349754,"teacher_disagreement_score":0.00084156706,"about_ca_system_score_codex":0.00013609836,"about_ca_system_score_gemma":0.00026819602,"threshold_uncertainty_score":0.0016733408},"labels":[],"label_agreement":null},{"id":"W2097238956","doi":"10.1186/1471-2180-7-1","title":"The Francisella pathogenicity island protein IglA localizes to the bacterial cytoplasm and is needed for intracellular growth","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":358,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Francisella; Francisella tularensis; Biology; Tularemia; Virulence; Effector; Pathogenicity island; Intracellular parasite; Secretion; Complementation; Intracellular; Microbiology; Cytoplasm; Operon; Type three secretion system; Type VI secretion system; Cell biology; Mutant; Gene; Genetics; Biochemistry","score_opus":0.008733718756922243,"score_gpt":0.2371444955418344,"score_spread":0.22841077678491215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097238956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98063916,0.004685679,0.010843697,0.00024959902,0.00006090273,0.00002812709,0.0008025281,0.00033206888,0.002358244],"genre_scores_gemma":[0.9930264,0.0006441742,0.0025307355,0.00005237004,0.000023739418,0.000026521726,0.0015261554,0.000037329148,0.0021325892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989307,0.000009346439,0.0000066753573,0.000023640167,0.000030433648,0.00003683048],"domain_scores_gemma":[0.999814,0.000019634326,0.00006646109,0.000014277342,0.000046945675,0.000038618335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007596175,0.0004044684,0.00021925948,0.00020790628,0.00018667591,0.00025542348,0.00018068682,0.00032741224,0.00094280904],"category_scores_gemma":[0.00017645535,0.00008727433,0.00020917266,0.00012569226,0.00018337846,0.0001995951,0.00027596735,0.00031362663,0.0008021867],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003430835,0.000007178614,0.00045606578,0.000030789903,0.0000015292927,0.00005335046,0.0000087413855,0.00001269949,0.9984372,0.00003635775,0.000046252997,0.0008755439],"study_design_scores_gemma":[0.0000068295767,0.0001899979,0.022542797,0.000024444338,0.000019222258,0.00069955405,0.00008698879,0.00087205746,0.9698566,0.00008086655,0.0056121084,0.000008603434],"about_ca_topic_score_codex":0.0010335486,"about_ca_topic_score_gemma":0.0008701104,"teacher_disagreement_score":0.0010335486,"about_ca_system_score_codex":0.0004188442,"about_ca_system_score_gemma":0.00022173306,"threshold_uncertainty_score":0.0031539798},"labels":[],"label_agreement":null},{"id":"W2097480902","doi":"10.1186/1471-2180-13-211","title":"Phylogeographic evidence of cognate recognition site patterns and transformation efficiency differences in H. pylori: theory of strain dominance","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institute of General Medical Sciences; National Institutes of Health; York University; Company of Biologists; Bill and Melinda Gates Foundation","keywords":"Biology; Genetics; Genome; Population; Restriction fragment length polymorphism; Restriction enzyme; Evolutionary biology; Haplotype; Genetic variation; DNA; Gene; Genotype","score_opus":0.028343234688714854,"score_gpt":0.24454618364398628,"score_spread":0.21620294895527142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097480902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958476,0.00024145277,0.002750428,0.00003565724,0.000001978378,0.000008341452,0.00005303563,0.000010945972,0.0010504491],"genre_scores_gemma":[0.9991357,0.00008449886,0.0006187059,0.00001909697,0.0000036801366,0.000005919182,0.00008272593,0.0000035325538,0.00004615642],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999405,0.00017646256,0.000036433135,0.00023010206,0.0000827031,0.00006922404],"domain_scores_gemma":[0.9971523,0.0015869152,0.00059819425,0.0002628098,0.00023970401,0.00016001114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011087519,0.00022216076,0.0003414137,0.0016003287,0.00052158383,0.0005932678,0.00042655782,0.0006471518,0.0015224381],"category_scores_gemma":[0.0028786603,0.00025527913,0.00027238668,0.0009002361,0.001139952,0.0005503291,0.00062641327,0.00038283603,0.00021470609],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012093027,0.00015791846,0.8002309,0.00025050473,0.00032750814,0.00034735104,0.0020705299,0.0027502507,0.1591484,0.0027088479,0.00014989238,0.03064864],"study_design_scores_gemma":[0.00005367015,0.00036789343,0.9755554,0.000034105065,0.00015418805,0.0010047221,0.00092403404,0.010940392,0.0061112875,0.0040307874,0.0007880643,0.000035422894],"about_ca_topic_score_codex":0.0009448769,"about_ca_topic_score_gemma":0.00079174986,"teacher_disagreement_score":0.0016003287,"about_ca_system_score_codex":0.0003081911,"about_ca_system_score_gemma":0.00017504134,"threshold_uncertainty_score":0.005863726},"labels":[],"label_agreement":null},{"id":"W2097653302","doi":"10.1186/1471-2180-12-40","title":"Antagonistic interactions peak at intermediate genetic distance in clinical and laboratory strains of Pseudomonas aeruginosa","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Evolutionary Game Theory and Cooperation","field":"Social Sciences","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Antagonism; Biology; Competition (biology); Pseudomonas aeruginosa; Genotype; Immune system; Ecology; Genetics; Microbiology; Evolutionary biology; Bacteria; Gene","score_opus":0.02513819287160729,"score_gpt":0.3310625847347579,"score_spread":0.3059243918631506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097653302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992995,0.0000743463,0.00023360827,0.000017191083,7.388939e-7,0.0000040673094,0.000012687786,0.0000017212335,0.0003560226],"genre_scores_gemma":[0.9996815,0.000020740968,0.00019889057,0.000011789582,0.0000011484761,0.0000043643504,0.000027151864,8.824806e-7,0.000053520103],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992073,0.0002872056,0.000043928252,0.00012734879,0.00017909272,0.0001550409],"domain_scores_gemma":[0.9978763,0.0010536803,0.0005399804,0.00008202655,0.00017052748,0.00027743506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005249968,0.0002215807,0.0003590978,0.0006285797,0.0004732589,0.00044464882,0.00029120536,0.0004509421,0.0012049783],"category_scores_gemma":[0.0022771617,0.00013944128,0.00021349045,0.00030911303,0.00048130043,0.000256354,0.00069263775,0.00039202216,0.00012816538],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013820227,0.0009105862,0.21236186,0.00023640576,0.00023761457,0.0010445842,0.0015550922,0.002095353,0.76116884,0.0016792009,0.00031707712,0.017011382],"study_design_scores_gemma":[0.00008587631,0.0022070191,0.93434507,0.000025050274,0.00012967133,0.002838836,0.0017689801,0.007420213,0.047577687,0.0026920221,0.00085115957,0.000058359],"about_ca_topic_score_codex":0.000986871,"about_ca_topic_score_gemma":0.001285499,"teacher_disagreement_score":0.0012049783,"about_ca_system_score_codex":0.00038321706,"about_ca_system_score_gemma":0.0002575434,"threshold_uncertainty_score":0.0040310025},"labels":[],"label_agreement":null},{"id":"W2098905737","doi":"10.1186/1471-2180-1-12","title":"Evidence that the RNAseH activity of the duck hepatitis B virus is unable to act on exogenous substrates","year":2001,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Reverse transcriptase; RNase H; Biology; RNA; Duck hepatitis B virus; DNA; RNA-Directed DNA Polymerase; Oligonucleotide; Virology; Polymerase; Hepatitis B virus; Complementary DNA; Molecular biology; DNA polymerase; Virus; Hepadnaviridae; Biochemistry; Gene","score_opus":0.08752354754719434,"score_gpt":0.30208082040528417,"score_spread":0.21455727285808984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098905737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97729415,0.0062691635,0.00919804,0.00016547459,0.00007403572,0.000034561763,0.0007657481,0.00007905609,0.0061198277],"genre_scores_gemma":[0.987435,0.0011941484,0.0067817788,0.0000822896,0.00002425647,0.000035287332,0.0019462798,0.000028488066,0.0024723802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995809,0.00009809624,0.000066289016,0.00010491502,0.00010691534,0.000042989956],"domain_scores_gemma":[0.9989015,0.0005159899,0.00013962325,0.00021575259,0.00015705064,0.00007000715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040073885,0.0003357628,0.00023033052,0.00019747589,0.00015908049,0.0004414254,0.00018582828,0.00035875934,0.002334556],"category_scores_gemma":[0.00074077595,0.00016735551,0.00017817087,0.00013654226,0.00036420047,0.00024506438,0.00020386367,0.00048510797,0.00084981555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007471281,0.000013739395,0.0010060818,0.00013251681,0.0000061256515,0.00008391074,0.000023308863,0.000027847189,0.9967539,0.00013047465,0.000036538662,0.0017107273],"study_design_scores_gemma":[0.000006774193,0.0001802673,0.007947789,0.000018117153,0.000016149312,0.0009711949,0.00003286081,0.00025016948,0.98758954,0.00008258861,0.002900524,0.0000040646764],"about_ca_topic_score_codex":0.00040942107,"about_ca_topic_score_gemma":0.00036578195,"teacher_disagreement_score":0.002334556,"about_ca_system_score_codex":0.00023761057,"about_ca_system_score_gemma":0.00021298278,"threshold_uncertainty_score":0.0078098774},"labels":[],"label_agreement":null},{"id":"W2101653602","doi":"10.1186/1471-2180-9-222","title":"Regulation of phenylacetic acid degradation genes of Burkholderia cenocepacia K56-2","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Montreal Neurological Institute and Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Manitoba Health Research Council","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Reporter gene; TetR; Phenylacetic acid; Transposon mutagenesis; Burkholderia cepacia complex; Burkholderia; Virulence; Mutant; Gene; Gene expression; Bacteria; Biochemistry; Repressor; Genetics; Transposable element","score_opus":0.02143495854263863,"score_gpt":0.29545222707435115,"score_spread":0.27401726853171254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101653602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993419,0.0007460909,0.0030758705,0.00011439786,0.00002747576,0.00003335002,0.0013543345,0.00009639386,0.0011331218],"genre_scores_gemma":[0.98892283,0.00043959808,0.005241966,0.00006964525,0.0000063833354,0.00006204865,0.002397779,0.000043067284,0.0028167416],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997563,0.000028716766,0.00003279026,0.00006638745,0.00007166745,0.000044161796],"domain_scores_gemma":[0.999772,0.000034915087,0.000086790635,0.000028092274,0.00004366139,0.00003462604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011954066,0.0005128422,0.0002474201,0.0002007477,0.00013858273,0.0003033014,0.00019221485,0.0002105913,0.0007219318],"category_scores_gemma":[0.00022351736,0.000113810376,0.0001919028,0.00018682226,0.0001851357,0.000147051,0.00034640267,0.00039102393,0.00061864144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005341596,0.000016833937,0.00033471882,0.000018193201,0.0000015392783,0.000019516723,0.0000085285665,0.000019873642,0.9990682,0.000019041978,0.000020518995,0.0004196537],"study_design_scores_gemma":[0.000013517791,0.00011795179,0.01215014,0.00000958405,0.000011522421,0.0002856638,0.00006542156,0.0008147896,0.9846581,0.000030910705,0.0018350328,0.000007353779],"about_ca_topic_score_codex":0.0016776784,"about_ca_topic_score_gemma":0.0014232092,"teacher_disagreement_score":0.0016776784,"about_ca_system_score_codex":0.00041104524,"about_ca_system_score_gemma":0.00023881502,"threshold_uncertainty_score":0.0033358335},"labels":[],"label_agreement":null},{"id":"W2102883514","doi":"10.1186/1471-2180-10-205","title":"Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen's University","funders":"","keywords":"Arsenite; Arsenate; Arsenic; Biology; Environmental chemistry; Chemistry","score_opus":0.007663231377272494,"score_gpt":0.20373889616437443,"score_spread":0.19607566478710195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102883514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99939835,0.00015497534,0.00007201306,0.000011809532,0.0000016228378,0.0000044259527,0.00021688154,0.0000030468484,0.00013677504],"genre_scores_gemma":[0.9981811,0.0002309824,0.0006297676,0.000021551014,0.000005445708,0.000008026971,0.0005522236,0.000002864046,0.00036808784],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99988174,0.0000121199255,0.000010032584,0.00004119684,0.000023223023,0.000031642066],"domain_scores_gemma":[0.9997477,0.00003403981,0.00007935581,0.000012143682,0.00007199456,0.000054805627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016157383,0.0003208796,0.00023064896,0.0006143516,0.00033610515,0.0004801098,0.0001632085,0.00027351608,0.0004673062],"category_scores_gemma":[0.00020067095,0.00014351514,0.00016799166,0.0005627225,0.0002943512,0.00019386163,0.0003833382,0.00020590767,0.00020456912],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000453365,0.00011514369,0.3673413,0.00018379232,0.00006255921,0.00041117912,0.0013971865,0.00019463371,0.62277067,0.000046557987,0.00009006636,0.0069334786],"study_design_scores_gemma":[0.0000049761156,0.00013763989,0.99001783,0.000010860174,0.000027221253,0.00055486173,0.00066510995,0.00014653674,0.008010548,0.000014781404,0.00040302775,0.0000065615354],"about_ca_topic_score_codex":0.0068262336,"about_ca_topic_score_gemma":0.009151574,"teacher_disagreement_score":0.0068262336,"about_ca_system_score_codex":0.00025110107,"about_ca_system_score_gemma":0.00029560574,"threshold_uncertainty_score":0.013572991},"labels":[],"label_agreement":null},{"id":"W2103301321","doi":"10.1186/1471-2180-5-49","title":"Identification of a new family of enzymes with potential O-acetylpeptidoglycan esterase activity in both Gram-positive and Gram-negative bacteria","year":2005,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Peptidoglycan; Biology; Lytic cycle; Bacteria; Biochemistry; Gene; Microbiology; Acetylation; Enzyme; Bacterial cell structure; Cell wall; Genetics","score_opus":0.010337571172118932,"score_gpt":0.2510031921890029,"score_spread":0.240665621016884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103301321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96114165,0.016443616,0.013622444,0.0006029938,0.00009123731,0.00016094648,0.004221693,0.0002251449,0.0034904098],"genre_scores_gemma":[0.95549524,0.00599951,0.022343496,0.0002941928,0.00012380566,0.00016336612,0.0114524225,0.000041264593,0.004086701],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99973184,0.00001931072,0.000024169292,0.00009724688,0.00007506849,0.000052326646],"domain_scores_gemma":[0.99939775,0.00013895429,0.00015558224,0.00004922762,0.00010640662,0.00015211276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024990138,0.0006492083,0.000507253,0.0015734716,0.0002552426,0.00080116733,0.00035386207,0.0008921352,0.0011505717],"category_scores_gemma":[0.0005921061,0.00019840863,0.00061549945,0.0010558385,0.00030092892,0.00060342,0.0005187243,0.00073813554,0.00089432497],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007256413,0.0002026834,0.022341438,0.00048334998,0.000049262497,0.0015064729,0.00018465995,0.00024759886,0.93171227,0.00029460297,0.00041362556,0.041838426],"study_design_scores_gemma":[0.00012519238,0.0021525118,0.43464497,0.0002517319,0.00030641217,0.029962577,0.0009006573,0.0052686026,0.46997595,0.001962221,0.054353643,0.00009555585],"about_ca_topic_score_codex":0.00042835053,"about_ca_topic_score_gemma":0.0002630845,"teacher_disagreement_score":0.0015734716,"about_ca_system_score_codex":0.00022793832,"about_ca_system_score_gemma":0.0003218447,"threshold_uncertainty_score":0.0038490891},"labels":[],"label_agreement":null},{"id":"W2105854065","doi":"10.1186/1471-2180-7-89","title":"BACTIBASE: a new web-accessible database for bacteriocin characterization","year":2007,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Bacteriocin; Context (archaeology); Biology; Antimicrobial peptides; Function (biology); Antimicrobial; Database; Computational biology; Computer science; Microbiology","score_opus":0.029652207179557577,"score_gpt":0.25112335413729514,"score_spread":0.22147114695773756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105854065","genre_codex":"dataset","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09488109,0.023708595,0.23348394,0.0020642271,0.000647857,0.0015989562,0.5018822,0.121059254,0.020673849],"genre_scores_gemma":[0.056188386,0.0064831106,0.22038743,0.00064906885,0.00014576131,0.00085321954,0.7069636,0.0030024135,0.005327021],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99936754,0.00008675999,0.00015418335,0.00012179913,0.00021835935,0.00005142708],"domain_scores_gemma":[0.9985488,0.0003728296,0.0002286481,0.00019048921,0.0003118895,0.0003472497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001379798,0.0015497849,0.0015397158,0.0046688993,0.00058981875,0.0023046087,0.0020616758,0.0015562108,0.0131343305],"category_scores_gemma":[0.0045170686,0.0005261851,0.0008102711,0.0053392914,0.00031311155,0.0025963068,0.0021729812,0.0012879751,0.010771314],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005945432,0.0007953197,0.0094320215,0.011000303,0.00052893936,0.0022310736,0.0006067583,0.003796893,0.24420461,0.007960637,0.16551079,0.5479872],"study_design_scores_gemma":[0.0010405765,0.00077592145,0.018874343,0.00096700166,0.00051989127,0.0045346413,0.0003286881,0.019895554,0.085309945,0.009711782,0.857696,0.00034558895],"about_ca_topic_score_codex":0.0014682302,"about_ca_topic_score_gemma":0.0013212872,"teacher_disagreement_score":0.0131343305,"about_ca_system_score_codex":0.00047619213,"about_ca_system_score_gemma":0.0016248394,"threshold_uncertainty_score":0.043938696},"labels":[],"label_agreement":null},{"id":"W2106591502","doi":"10.1186/1471-2180-4-39","title":"Branched-chain amino acid aminotransferase and methionine formation in Mycobacterium tuberculosis","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"National Institute of Allergy and Infectious Diseases; University of British Columbia","keywords":"Transamination; Biology; Biochemistry; Methionine; Amino acid; Valine; Leucine; Branched-chain amino acid; Mycobacterium tuberculosis; Microbiology; Tuberculosis","score_opus":0.023430367769105453,"score_gpt":0.29094544218678675,"score_spread":0.2675150744176813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106591502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9155455,0.07532071,0.0044317404,0.00036488622,0.00009741488,0.00006778742,0.00059021305,0.00007136492,0.0035102936],"genre_scores_gemma":[0.98497635,0.008958279,0.0029581685,0.00007111791,0.000023480035,0.000021991333,0.0009351568,0.000008270362,0.0020471627],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999021,0.000021179887,0.000011532813,0.000018801904,0.00002810976,0.000018208488],"domain_scores_gemma":[0.99988174,0.00002840697,0.0000351989,0.0000056331987,0.000028954266,0.000020133419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013307086,0.00031879792,0.00028364043,0.00017003364,0.000106087704,0.00020174973,0.00021088465,0.0005112143,0.0009590792],"category_scores_gemma":[0.00021283193,0.00009726759,0.0001923221,0.0002730492,0.0001570656,0.00018993118,0.00016099545,0.0003217732,0.000421059],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023120084,0.000045382745,0.0011834237,0.0003255412,0.000010465352,0.00024161846,0.000022543934,0.00012206933,0.99296594,0.000091705835,0.00004469816,0.004715503],"study_design_scores_gemma":[0.00005825623,0.0010939157,0.025961945,0.000088724824,0.00005073737,0.0027482419,0.000077537654,0.001204642,0.9573355,0.00037342828,0.010994604,0.000012507761],"about_ca_topic_score_codex":0.00086084654,"about_ca_topic_score_gemma":0.0009362748,"teacher_disagreement_score":0.0009590792,"about_ca_system_score_codex":0.00033524592,"about_ca_system_score_gemma":0.0002473845,"threshold_uncertainty_score":0.0032083988},"labels":[],"label_agreement":null},{"id":"W2112673542","doi":"10.1186/1471-2180-14-189","title":"Exposure to a social stressor disrupts the community structure of the colonic mucosa-associated microbiota","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":402,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Center for Complementary and Integrative Health; National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"Biology; Stressor; Commensalism; Microbiome; Pyrosequencing; Immunology; Population; Gut flora; Feces; Intestinal mucosa; Physiology; Immune system; Microbiology; Bacteria; Internal medicine; Genetics; Environmental health; Gene; Medicine","score_opus":0.011033692745117086,"score_gpt":0.25301282818023957,"score_spread":0.24197913543512248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112673542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984761,0.00030094423,0.0006157588,0.00005576164,0.00002035076,0.00001581312,0.0002516616,0.000022249578,0.00024124217],"genre_scores_gemma":[0.9973423,0.00031864308,0.001208518,0.0001334605,0.000017561342,0.000052611696,0.00034658116,0.000011418253,0.00056893297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997223,0.000032989476,0.000016720742,0.000084539366,0.000068763846,0.000074698844],"domain_scores_gemma":[0.999703,0.00002261595,0.00010625139,0.000024915442,0.00002420144,0.00011895076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013641368,0.0005297031,0.00028567231,0.00032071353,0.00019211353,0.0002924103,0.0001882501,0.0003577682,0.0011784071],"category_scores_gemma":[0.00013196985,0.00015744047,0.00042401507,0.00016424307,0.00044897635,0.0001811519,0.00038872924,0.00088782015,0.0001334111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040227428,0.000068524634,0.0021187442,0.000029861005,0.00001781994,0.000033649918,0.000031032327,0.000023286912,0.9963586,0.000010463192,0.000022989898,0.0008828113],"study_design_scores_gemma":[0.00004047922,0.0080890525,0.3586276,0.00003736931,0.00012316588,0.00043377714,0.0004732414,0.0009287881,0.6298467,0.000115266615,0.0012505394,0.0000340983],"about_ca_topic_score_codex":0.000583549,"about_ca_topic_score_gemma":0.0013933921,"teacher_disagreement_score":0.0011784071,"about_ca_system_score_codex":0.00028429966,"about_ca_system_score_gemma":0.00019887494,"threshold_uncertainty_score":0.0039421916},"labels":[],"label_agreement":null},{"id":"W2114360842","doi":"10.1186/1471-2180-10-42","title":"The cell envelope subtilisin-like proteinase is a virulence determinant for Streptococcus suis","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Streptococcus suis; Virulence; Microbiology; Subtilisin; Catalytic triad; Mutant; Virulence factor; Autolysin; Proteinase K; Gene; Peptide sequence; Genetics; Biochemistry; Enzyme","score_opus":0.01589887946896116,"score_gpt":0.2845470493908623,"score_spread":0.2686481699219011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114360842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990256,0.000163982,0.0004807511,0.000023589042,0.0000038044507,0.000005044959,0.00008158163,0.000013253193,0.00020239556],"genre_scores_gemma":[0.99836963,0.00007863931,0.0008296843,0.000012953201,0.000003537971,0.0000048838015,0.00037798836,0.0000044429157,0.0003182618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999863,0.000020408008,0.000016247857,0.000015455644,0.000059810365,0.000025065152],"domain_scores_gemma":[0.99978894,0.00003822804,0.000080205755,0.0000169001,0.000034507942,0.00004123059],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012227494,0.00043147887,0.0002178265,0.00029476485,0.0001074067,0.00021402893,0.00010990172,0.0002144943,0.00085034774],"category_scores_gemma":[0.00024455835,0.000066287066,0.00023182739,0.00022364315,0.00015527391,0.00010422586,0.00020123755,0.00024829447,0.00025122942],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055785895,0.000030281448,0.003502579,0.000029471881,0.0000061142005,0.0001014066,0.000016124159,0.000024923667,0.995181,0.00002656516,0.000018085293,0.0010076514],"study_design_scores_gemma":[0.0000152349185,0.000675651,0.08531112,0.000016186026,0.00006411847,0.0027645582,0.000118965276,0.0010820901,0.9084924,0.00008349261,0.0013682515,0.000007921504],"about_ca_topic_score_codex":0.00067967933,"about_ca_topic_score_gemma":0.00044532985,"teacher_disagreement_score":0.00085034774,"about_ca_system_score_codex":0.00016722789,"about_ca_system_score_gemma":0.00022297287,"threshold_uncertainty_score":0.0028446913},"labels":[],"label_agreement":null},{"id":"W2114636300","doi":"10.1186/1471-2180-9-195","title":"malT knockout mutation invokes a stringent type gene-expression profile in Actinobacillus pleuropneumoniae in bronchoalveolar fluid","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Public Health Agency of Canada; Université de Montréal; University of Guelph","funders":"","keywords":"Actinobacillus pleuropneumoniae; Regulon; Biology; Microbiology; Gene; Mutant; Innate immune system; Wild type; Molecular biology; Genetics; Immune system","score_opus":0.021397524554455333,"score_gpt":0.2777403120404678,"score_spread":0.25634278748601247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114636300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965634,0.00029149198,0.0016771838,0.00008920288,0.000021965994,0.000021993224,0.0009002541,0.000079831945,0.00035461906],"genre_scores_gemma":[0.9943402,0.00018355984,0.002026954,0.00008554637,0.000007794559,0.00005634778,0.0014633584,0.0000357494,0.0018004372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974006,0.000027938024,0.000028088109,0.0000694048,0.00007849802,0.000055864562],"domain_scores_gemma":[0.9997981,0.000037091544,0.00007323668,0.000021600072,0.000020813577,0.000049223017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000924526,0.00047065187,0.0003270061,0.000238759,0.0001251129,0.00032064904,0.00019500995,0.00040233697,0.001269518],"category_scores_gemma":[0.00014020097,0.0001792907,0.0003367905,0.00017793167,0.0002878115,0.00014447502,0.00023031978,0.00054279016,0.00035695246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038174152,0.0000097555185,0.000088139685,0.0000069315533,0.0000011274936,0.000028241182,0.000004842637,0.000006443719,0.99973434,0.0000067663814,0.000006101489,0.00006929699],"study_design_scores_gemma":[0.000006987518,0.00019610245,0.020088661,0.000006608183,0.000012655729,0.0003341248,0.00009769992,0.0006047905,0.97798765,0.000028211793,0.0006301124,0.0000063115162],"about_ca_topic_score_codex":0.0005423364,"about_ca_topic_score_gemma":0.0006365512,"teacher_disagreement_score":0.001269518,"about_ca_system_score_codex":0.0002554203,"about_ca_system_score_gemma":0.00012359006,"threshold_uncertainty_score":0.00424695},"labels":[],"label_agreement":null},{"id":"W2114909197","doi":"10.1186/1471-2180-12-141","title":"Extensive remodeling of the Pseudomonas syringae pv. avellanae type III secretome associated with two independent host shifts onto hazelnut","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Pseudomonas syringae; Lineage (genetic); Horizontal gene transfer; Virulence; Genetics; Gene; Host (biology); Convergent evolution; Host adaptation; Phylogenetics; Genome; Effector; Evolutionary biology; Phenotype; Comparative genomics; Genomics","score_opus":0.026114185113007206,"score_gpt":0.21384658862879907,"score_spread":0.18773240351579187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114909197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99955565,0.00006967176,0.00014415495,0.0000064013498,0.0000010000083,0.0000036155075,0.000062055406,0.0000053677823,0.00015200436],"genre_scores_gemma":[0.99877876,0.000053490035,0.00025653874,0.000021182315,0.0000023042128,0.000005978748,0.00043440255,0.000005237074,0.00044219015],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99991596,0.0000055715477,0.0000039831466,0.000028916047,0.00001902086,0.000026562098],"domain_scores_gemma":[0.9997907,0.000029049981,0.000069190886,0.000021574095,0.000026274973,0.00006321314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011125571,0.00018132143,0.0001630839,0.000282037,0.00016275317,0.00031938503,0.00016688765,0.0002269726,0.00045612588],"category_scores_gemma":[0.00013334586,0.00010400893,0.00025165998,0.00018531179,0.0002067329,0.00022206863,0.00033217363,0.00048670452,0.00014231782],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015408584,0.000017051267,0.01740433,0.000017676484,0.000009081329,0.00019761724,0.00010582239,0.0000395472,0.98083055,0.000032820004,0.000011938673,0.0011793802],"study_design_scores_gemma":[0.0000097158345,0.0001985126,0.91390604,0.000006866686,0.000019790006,0.0008345857,0.00025573015,0.0005209427,0.08341046,0.00007254467,0.00075620326,0.000008714028],"about_ca_topic_score_codex":0.00094277447,"about_ca_topic_score_gemma":0.0015547178,"teacher_disagreement_score":0.00094277447,"about_ca_system_score_codex":0.0002874701,"about_ca_system_score_gemma":0.00015371988,"threshold_uncertainty_score":0.0020857453},"labels":[],"label_agreement":null},{"id":"W2115006373","doi":"10.1186/1471-2180-10-199","title":"Damage of Streptococcus mutans biofilms by carolacton, a secondary metabolite from the myxobacterium Sorangium cellulosum","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto","keywords":"Biofilm; Streptococcus mutans; Microbiology; Biology; Dental plaque; Bacteria; Mutant; Virulence; Streptococcus gordonii; Secondary metabolite; Pathogen; Biochemistry; Gene; Genetics","score_opus":0.004554456047328257,"score_gpt":0.19926690514720752,"score_spread":0.19471244909987925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115006373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983175,0.00059597526,0.0005005731,0.000039417446,0.000009392164,0.000018318478,0.000099993136,0.000016175454,0.00040273665],"genre_scores_gemma":[0.99588984,0.00065173104,0.0018994974,0.00003847245,0.000008545174,0.000024599036,0.00031373824,0.000009212366,0.0011643096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998878,0.000026623662,0.0000099900635,0.000017442682,0.000038641265,0.000019407827],"domain_scores_gemma":[0.9998864,0.0000316047,0.00002892498,0.00001047082,0.000017802719,0.000024766154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015940407,0.0004640518,0.0002728769,0.00016091549,0.00013710707,0.00021019031,0.00015892963,0.00036725434,0.00069619843],"category_scores_gemma":[0.00015149874,0.00010123521,0.00022792115,0.00011856323,0.00014182362,0.0001533938,0.0002590582,0.00027961956,0.00014338724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072538765,0.000024091143,0.00015136653,0.00002663195,0.0000028772217,0.000024841895,0.000007886878,0.000030846208,0.99895227,0.000009793919,0.000012012435,0.000684857],"study_design_scores_gemma":[0.00000880449,0.00048885733,0.0028094735,0.0000043040727,0.0000082622155,0.00009555147,0.00001443404,0.00020717169,0.9960127,0.0000091256525,0.00033933722,0.0000020798452],"about_ca_topic_score_codex":0.0003822019,"about_ca_topic_score_gemma":0.00060180924,"teacher_disagreement_score":0.00069619843,"about_ca_system_score_codex":0.00014220279,"about_ca_system_score_gemma":0.00018239132,"threshold_uncertainty_score":0.0023290515},"labels":[],"label_agreement":null},{"id":"W2115308874","doi":"10.1186/1471-2180-9-263","title":"Burkholderia thailandensis harbors two identical rhl gene clusters responsible for the biosynthesis of rhamnolipids","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Armand-Frappier Foundation","keywords":"Rhamnolipid; Burkholderia; Biology; Gene cluster; Pseudomonas aeruginosa; Gene; Mutant; Microbiology; Burkholderia pseudomallei; Bacteria; Genetics","score_opus":0.018023558712537507,"score_gpt":0.25416391629124474,"score_spread":0.23614035757870724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115308874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99453825,0.0005326235,0.0027607568,0.00005142922,0.000010394255,0.00003837783,0.0010885671,0.00009937843,0.00088019896],"genre_scores_gemma":[0.99433494,0.00020758885,0.0025612777,0.000028250059,0.0000054659417,0.000040909737,0.002000875,0.000020012165,0.0008007233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997794,0.000028963677,0.000028285664,0.00005914024,0.00005915406,0.00004508335],"domain_scores_gemma":[0.99945813,0.000088242916,0.00020818318,0.00006114454,0.00007705189,0.00010720103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118941556,0.00063342176,0.00028077525,0.00045740945,0.00021375646,0.00045348582,0.00024295841,0.00038471379,0.00087809056],"category_scores_gemma":[0.00034281742,0.00016479826,0.0003037178,0.00057275424,0.00018716388,0.00026833467,0.0005401717,0.00037009383,0.0006302618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024983677,0.000074992146,0.006329542,0.0001450809,0.000019412035,0.00070698094,0.00018747438,0.00012714193,0.9888869,0.00006822267,0.000044721513,0.0031597798],"study_design_scores_gemma":[0.000103086364,0.00084798754,0.20573288,0.000092609545,0.00022136988,0.014685204,0.0015338341,0.0037919576,0.7628993,0.00030399315,0.009686973,0.00010079714],"about_ca_topic_score_codex":0.0018399198,"about_ca_topic_score_gemma":0.00082345953,"teacher_disagreement_score":0.0018399198,"about_ca_system_score_codex":0.00023131736,"about_ca_system_score_gemma":0.00027688054,"threshold_uncertainty_score":0.0036584735},"labels":[],"label_agreement":null},{"id":"W2117615478","doi":"10.1186/1471-2180-11-252","title":"An alternative physiological role for the EmhABC efflux pump in Pseudomonas fluorescens cLP6a","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Biology; Efflux; Pseudomonas fluorescens; Parasitology; Microbiology; Pseudomonas aeruginosa; Biotechnology; Bacteria; Zoology; Genetics","score_opus":0.02731961371812974,"score_gpt":0.2680985839712294,"score_spread":0.24077897025309963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117615478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892217,0.001328746,0.006540323,0.00064545526,0.000047987687,0.000027558115,0.0009306325,0.00019147046,0.001066055],"genre_scores_gemma":[0.9943295,0.00027944348,0.0030183925,0.00013232062,0.000012542911,0.00002895104,0.0007246691,0.000022042861,0.0014521979],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974996,0.000022562293,0.000020553549,0.00007496783,0.00008320164,0.000048845246],"domain_scores_gemma":[0.99965644,0.000045983372,0.00008838078,0.00004163572,0.00011019903,0.00005726119],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015774115,0.0005753214,0.00038235896,0.0002096241,0.00030558862,0.0005107185,0.00041771738,0.0008463838,0.0011716622],"category_scores_gemma":[0.00026384008,0.00014392928,0.0003819941,0.00018290976,0.00038803302,0.0006591216,0.00051789975,0.0007528451,0.00056134415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005377355,0.000017730723,0.0005402547,0.000046356447,0.0000022950085,0.00007061735,0.0000105966,0.000028599907,0.99857783,0.0000443155,0.000031126165,0.0005764786],"study_design_scores_gemma":[0.0000110630135,0.0001697264,0.016072284,0.000012141008,0.000010058858,0.00075732626,0.00008818071,0.0010550636,0.97994804,0.00012544174,0.0017328106,0.000017880828],"about_ca_topic_score_codex":0.0010553242,"about_ca_topic_score_gemma":0.0010608798,"teacher_disagreement_score":0.0011716622,"about_ca_system_score_codex":0.00062196964,"about_ca_system_score_gemma":0.00025180448,"threshold_uncertainty_score":0.004512787},"labels":[],"label_agreement":null},{"id":"W2121363497","doi":"10.1186/1471-2180-10-22","title":"BACTIBASE second release: a database and tool platform for bacteriocin characterization","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":379,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Bacteriocin; Annotation; Biology; Computational biology; Data curation; Computer science; Database; Bioinformatics; World Wide Web; Antimicrobial","score_opus":0.01500234145370776,"score_gpt":0.20995719606034868,"score_spread":0.19495485460664091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121363497","genre_codex":"dataset","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.061917663,0.012269776,0.24660788,0.0013522832,0.00060454145,0.001586374,0.43651617,0.21796705,0.021178281],"genre_scores_gemma":[0.040528167,0.003992866,0.1864102,0.00046015796,0.00013826498,0.0010518667,0.75160915,0.0084135095,0.0073959273],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990357,0.000110486595,0.00017671153,0.0001713961,0.00038744716,0.00011829743],"domain_scores_gemma":[0.99819034,0.00036114184,0.00030326316,0.00023252348,0.00051302783,0.00039966902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002024755,0.0024815353,0.0017105622,0.005008081,0.00074241555,0.0024158221,0.0022992897,0.0015483223,0.020819698],"category_scores_gemma":[0.004101318,0.00074798556,0.0012469573,0.0047742864,0.00033208844,0.0021035452,0.0022694296,0.0017039186,0.023057863],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0064732167,0.0007599704,0.007723031,0.00819247,0.000515698,0.0017213833,0.00059046765,0.0023469906,0.38055247,0.0041839774,0.23546404,0.35147625],"study_design_scores_gemma":[0.0010164999,0.0008198172,0.016325261,0.0007202282,0.00046524205,0.004328321,0.00022446996,0.012704785,0.15493003,0.0040322267,0.8040369,0.000396189],"about_ca_topic_score_codex":0.0016971593,"about_ca_topic_score_gemma":0.0015661438,"teacher_disagreement_score":0.020819698,"about_ca_system_score_codex":0.00053995906,"about_ca_system_score_gemma":0.0023461203,"threshold_uncertainty_score":0.0696488},"labels":[],"label_agreement":null},{"id":"W2122478397","doi":"10.1186/1471-2180-4-6","title":"Bacillus subtilis GlcK activity requires cysteines within a motif that discriminates microbial glucokinases into two lineages","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Regional Cancer Foundation","funders":"Universität Konstanz; University of Ottawa","keywords":"Glucokinase; Biology; Biochemistry; Alanine; Bacillus subtilis; Cysteine; Complementation; GenBank; Protein-fragment complementation assay; Escherichia coli; PEP group translocation; Enzyme; Gene; Mutant; Amino acid; Genetics; Bacteria","score_opus":0.025570056657568858,"score_gpt":0.29111312328369954,"score_spread":0.2655430666261307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122478397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978264,0.00029049962,0.0011653233,0.000030686984,0.000008258045,0.000011250666,0.00017528735,0.000025240332,0.0004670912],"genre_scores_gemma":[0.9974107,0.00011191773,0.001592298,0.000022684531,0.000003058906,0.000009133687,0.0005651125,0.000010855111,0.00027417322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988616,0.000017404634,0.000014849836,0.000030353758,0.000029583925,0.00002166335],"domain_scores_gemma":[0.9997477,0.000045394274,0.00008568469,0.00001868673,0.000038429916,0.000064188214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011424226,0.00027192637,0.00019526057,0.00011100276,0.00012212613,0.00024855052,0.00013910729,0.00026778824,0.00077113375],"category_scores_gemma":[0.00021453356,0.00007457009,0.00015190044,0.0001537709,0.00018508628,0.0001369158,0.00014827229,0.0002908455,0.00032138507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019833031,0.000030133899,0.00089809,0.0000433412,0.0000028735012,0.00006477656,0.000013193195,0.000035955556,0.99798596,0.000045751287,0.00001890988,0.00066263234],"study_design_scores_gemma":[0.000037781057,0.00035383587,0.026584584,0.000019762838,0.000022138183,0.0009374796,0.000058569818,0.00070618273,0.9700172,0.00008000142,0.0011713685,0.000011072232],"about_ca_topic_score_codex":0.00070442946,"about_ca_topic_score_gemma":0.00056084414,"teacher_disagreement_score":0.00077113375,"about_ca_system_score_codex":0.00020151345,"about_ca_system_score_gemma":0.0002124836,"threshold_uncertainty_score":0.002579689},"labels":[],"label_agreement":null},{"id":"W2123882327","doi":"10.1186/1471-2180-10-121","title":"Cell wall proteome analysis of Mycobacterium smegmatis strain MC2 155","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Mycobacterium smegmatis; Proteome; Biology; Proteomics; Cell wall; FtsZ; Computational biology; Cell; Biochemistry; Cell biology; Cell division; Mycobacterium tuberculosis; Gene","score_opus":0.01860882477862988,"score_gpt":0.2990520924079525,"score_spread":0.2804432676293226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123882327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99131155,0.0025262616,0.0018912284,0.00007945093,0.00002471125,0.000033222506,0.003033109,0.000064118234,0.0010363304],"genre_scores_gemma":[0.972048,0.0024224191,0.0103598805,0.00011304323,0.000033449887,0.00007627901,0.013011364,0.00006161377,0.0018738079],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999887,0.000009596381,0.00001104066,0.000027019674,0.00004844802,0.000016889897],"domain_scores_gemma":[0.99989057,0.00001694772,0.000025232172,0.000009162109,0.000041593557,0.000016390522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013896132,0.00056339736,0.00029646856,0.00076865475,0.00022464457,0.00028941323,0.00017438064,0.00030308057,0.0005388681],"category_scores_gemma":[0.00020596715,0.00009271473,0.00037510213,0.0007340837,0.00011165171,0.0001771119,0.0002474942,0.00028351496,0.00040665682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000547699,0.00001555828,0.0010337421,0.000059789618,0.000007288285,0.000089979214,0.000025095462,0.000026888654,0.9975859,0.000012238859,0.000030136101,0.001058629],"study_design_scores_gemma":[0.000014326871,0.0005540434,0.108187445,0.00003998236,0.00011536776,0.0017866949,0.00022489295,0.0011620426,0.8819863,0.0000946307,0.0058167973,0.00001754637],"about_ca_topic_score_codex":0.0007966961,"about_ca_topic_score_gemma":0.0007041278,"teacher_disagreement_score":0.0007966961,"about_ca_system_score_codex":0.0001578841,"about_ca_system_score_gemma":0.00018846095,"threshold_uncertainty_score":0.0018026233},"labels":[],"label_agreement":null},{"id":"W2124342381","doi":"10.1186/s12866-015-0344-5","title":"Characterization of the interaction of staphylococcal enterotoxin B with CD1d expressed in human renal proximal tubule epithelial cells","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Axela (Canada)","funders":"Defense Threat Reduction Agency","keywords":"CD1D; Biology; Antigen; Immunology; Innate immune system; Immune system; Acquired immune system; Natural killer T cell; CD8","score_opus":0.01621664365488063,"score_gpt":0.2263617667533155,"score_spread":0.2101451230984349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124342381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99591917,0.00084379636,0.0022520556,0.00005492088,0.000008585648,0.000014895714,0.0001830448,0.000011422574,0.0007120608],"genre_scores_gemma":[0.994578,0.0006765561,0.0023660338,0.0000611791,0.0000069581233,0.000027959979,0.0006970145,0.000004048505,0.0015821755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998945,0.00001841782,0.0000069051025,0.000020608655,0.000036119127,0.00002340178],"domain_scores_gemma":[0.99993813,0.000016425196,0.000011890121,0.000007897569,0.000015784106,0.000009938765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010874323,0.00012804591,0.00014306998,0.0001568148,0.00016318983,0.00020225938,0.000110352965,0.00026880763,0.0011082909],"category_scores_gemma":[0.00011706492,0.0000811859,0.0002014904,0.00019681948,0.00009481404,0.00008244306,0.00012299295,0.00020907218,0.00033856655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040035124,0.000015685788,0.0007784309,0.000029420222,0.0000032749604,0.000056651286,0.00001846701,0.000045652967,0.9984849,0.000039185477,0.000012685171,0.0004755683],"study_design_scores_gemma":[0.000012100786,0.00038162537,0.04660199,0.000010112533,0.000021623146,0.00088452175,0.00013905682,0.0024716582,0.9454535,0.00005816498,0.0039579486,0.000007679955],"about_ca_topic_score_codex":0.000590476,"about_ca_topic_score_gemma":0.0005229142,"teacher_disagreement_score":0.0011082909,"about_ca_system_score_codex":0.00023886694,"about_ca_system_score_gemma":0.000111463414,"threshold_uncertainty_score":0.0037075877},"labels":[],"label_agreement":null},{"id":"W2131337502","doi":"10.1186/s12866-015-0498-1","title":"Chlamydia Outer Protein (Cop) B from Chlamydia pneumoniae possesses characteristic features of a type III secretion (T3S) translocator protein","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Biology; Chlamydia; Translocator protein; Chlamydiales; Secretion; Chlamydophila pneumoniae; Microbiology; Type three secretion system; Bacterial protein; Parasitology; Chlamydiaceae; Virology; Immunology; Bacteria; Gene; Inflammation; Genetics; Virulence; Endocrinology","score_opus":0.031885623564828,"score_gpt":0.2777205711936622,"score_spread":0.24583494762883423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131337502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99258465,0.0014484709,0.0036534336,0.000096592536,0.000035097786,0.000048129572,0.0010617679,0.00006242785,0.0010094208],"genre_scores_gemma":[0.98872966,0.00059821614,0.0066264695,0.00009781372,0.0000123680375,0.00004572089,0.0025662854,0.000022321206,0.001301112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999902,0.000007890853,0.000009321705,0.000019611798,0.00003349504,0.000027669917],"domain_scores_gemma":[0.9998223,0.000021919735,0.00005665963,0.000021620752,0.000026841926,0.00005075509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009904906,0.00040883585,0.0002724142,0.00016646775,0.00025469466,0.000271951,0.0001392044,0.00043128518,0.0009027266],"category_scores_gemma":[0.00015890387,0.00013101105,0.00046883055,0.00019759193,0.00018441916,0.00012033115,0.00021857588,0.0005010217,0.00048617407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000035371842,0.00001302797,0.0005310616,0.00004951653,0.0000042732527,0.000063459804,0.0000065782206,0.000015481872,0.9987355,0.000024387058,0.000029502798,0.0004918613],"study_design_scores_gemma":[0.000019547213,0.0003940368,0.048675045,0.000026241012,0.000036366288,0.0028579845,0.000047430764,0.0005029498,0.9414079,0.000051899115,0.0059672575,0.000013381868],"about_ca_topic_score_codex":0.00370121,"about_ca_topic_score_gemma":0.0036168294,"teacher_disagreement_score":0.00370121,"about_ca_system_score_codex":0.0004074717,"about_ca_system_score_gemma":0.0005378067,"threshold_uncertainty_score":0.007359326},"labels":[],"label_agreement":null},{"id":"W2132265441","doi":"10.1186/1471-2180-9-200","title":"Assessment of three Resistance-Nodulation-Cell Division drug efflux transporters of Burkholderia cenocepacia in intrinsic antibiotic resistance","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Fondazione per la Ricerca sulla Fibrosi Cistica; Università degli Studi di Pavia","keywords":"Efflux; Burkholderia cenocepacia; Biology; Microbiology; Operon; ATP-binding cassette transporter; Drug resistance; Burkholderia cepacia complex; Mutant; Bacteria; Genetics; Gene; Transporter; Burkholderia","score_opus":0.012718795574146456,"score_gpt":0.28854195538436783,"score_spread":0.2758231598102214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132265441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978636,0.000278528,0.0013003638,0.000022567148,0.0000024426506,0.000019897821,0.00025743566,0.000011933666,0.00024317426],"genre_scores_gemma":[0.99490595,0.00018070427,0.003705727,0.000018614364,0.0000015803388,0.00003114749,0.00082148326,0.0000068650324,0.00032810404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999689,0.000059969625,0.000039031394,0.000055324483,0.00009926775,0.000057417263],"domain_scores_gemma":[0.99963593,0.000071080496,0.00009796524,0.00002859853,0.00008529041,0.000081078906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029736364,0.0005325503,0.0003128788,0.0003271361,0.00013991877,0.00042835867,0.00023200894,0.00038125014,0.00041306028],"category_scores_gemma":[0.00041654886,0.00014918618,0.00019825716,0.00034221073,0.00020395893,0.00028583276,0.00041547793,0.00036219053,0.00019971866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006451073,0.000029722392,0.0030473296,0.000025198951,0.000004532207,0.00001854337,0.000015853166,0.000045509638,0.99612504,0.000013050274,0.0000035114356,0.0006072896],"study_design_scores_gemma":[0.000023934695,0.0006034117,0.053427693,0.000014821377,0.00005065622,0.00039061048,0.0001606554,0.001952775,0.94236445,0.000057050434,0.00094397215,0.00001002525],"about_ca_topic_score_codex":0.0014607544,"about_ca_topic_score_gemma":0.0013106532,"teacher_disagreement_score":0.0014607544,"about_ca_system_score_codex":0.00030413014,"about_ca_system_score_gemma":0.00026420938,"threshold_uncertainty_score":0.0029044747},"labels":[],"label_agreement":null},{"id":"W2132458820","doi":"10.1186/1471-2180-9-72","title":"Statistical characterization of the GxxxG glycine repeats in the flagellar biosynthesis protein FliH and its Type III secretion homologue YscL","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; GenBank; Phylogenetic tree; Flagellum; Amino acid; Peptide sequence; Sequence alignment; Glycine; Multiple sequence alignment; Genetics; Biochemistry; Gene","score_opus":0.007925763628588421,"score_gpt":0.21176943205369977,"score_spread":0.20384366842511134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132458820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99525696,0.00037388946,0.001915764,0.00002053227,0.0000036354218,0.000015985655,0.0018568415,0.000045568777,0.0005107751],"genre_scores_gemma":[0.9879894,0.00010008964,0.0032105292,0.000016547181,0.000010293915,0.000037176374,0.008369645,0.000021426737,0.00024498228],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99967384,0.0000332578,0.00003967949,0.00012208559,0.00008123818,0.000049844373],"domain_scores_gemma":[0.99832183,0.00062820996,0.0005362407,0.000079394056,0.00025228036,0.00018196061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004782763,0.00023610001,0.00031963116,0.0019840165,0.0002782577,0.00043128192,0.00023853169,0.00036562711,0.0012443572],"category_scores_gemma":[0.0017304115,0.000086924665,0.00045297388,0.0016481385,0.0002367384,0.00023472433,0.0003269338,0.00031106215,0.0006179767],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021032093,0.00019431704,0.4655008,0.00053727743,0.00029803833,0.0007292409,0.000347911,0.0018858693,0.49592692,0.00030787836,0.0005486853,0.031619724],"study_design_scores_gemma":[0.000023437413,0.00050511514,0.95354605,0.000028710368,0.00014050023,0.0012211708,0.00025603626,0.009363202,0.031832412,0.00023459562,0.0028296586,0.000019163861],"about_ca_topic_score_codex":0.00113535,"about_ca_topic_score_gemma":0.000954473,"teacher_disagreement_score":0.0019840165,"about_ca_system_score_codex":0.00028087432,"about_ca_system_score_gemma":0.0002814807,"threshold_uncertainty_score":0.004162848},"labels":[],"label_agreement":null},{"id":"W2133974051","doi":"10.1186/1471-2180-12-307","title":"Whole genome HBV deletion profiles and the accumulation of preS deletion mutant during antiviral treatment","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Bundesministerium für Bildung und Forschung; University of British Columbia; National Natural Science Foundation of China","keywords":"Biology; Virology; Hepatitis B virus; clone (Java method); Genome; Genetics; Orthohepadnavirus; Hepadnaviridae; Virus; Gene","score_opus":0.04694235061507117,"score_gpt":0.30315234331342994,"score_spread":0.25620999269835876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133974051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99934,0.0003097755,0.000106489395,0.0000049575165,7.643512e-7,0.0000023768782,0.00009610411,0.0000036018646,0.00013587883],"genre_scores_gemma":[0.9995881,0.00007283553,0.00009327888,0.0000048953843,0.0000013767867,0.0000024519968,0.00016685008,0.0000020702778,0.00006817625],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99982506,0.000045154946,0.000019149626,0.00004837272,0.00004020943,0.000022041462],"domain_scores_gemma":[0.9991553,0.00026886573,0.00037269888,0.000047161782,0.00009174307,0.000064340966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026542356,0.000120510056,0.00023489652,0.0004620485,0.00011048057,0.00026986198,0.000091554575,0.00021497667,0.0009931655],"category_scores_gemma":[0.0010718084,0.00008745895,0.00016934454,0.0003387688,0.000121668505,0.00019550629,0.00011399655,0.0002071038,0.00016809726],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019380754,0.00004204103,0.9539553,0.000048612143,0.000085394546,0.00031306557,0.00013076502,0.00020895037,0.033112466,0.000022856873,0.0000634046,0.010079013],"study_design_scores_gemma":[0.000005937558,0.00035376186,0.99357444,0.0000051628185,0.000051042298,0.0015263389,0.000075397285,0.00031919606,0.0038414388,0.000018717266,0.00022483084,0.0000036489575],"about_ca_topic_score_codex":0.0002914681,"about_ca_topic_score_gemma":0.00026638948,"teacher_disagreement_score":0.0009931655,"about_ca_system_score_codex":0.00008981302,"about_ca_system_score_gemma":0.00005527208,"threshold_uncertainty_score":0.003322482},"labels":[],"label_agreement":null},{"id":"W2135006856","doi":"10.1186/s12866-014-0283-6","title":"Occurrence of Clostridium difficile in seasoned hamburgers and seven processing plants in Iran","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Isfahan University of Medical Sciences","keywords":"Clostridium difficile; Ribotyping; Biology; Microbiology; Clostridium difficile toxin A; Clostridium difficile toxin B; Polymerase chain reaction; Gene","score_opus":0.030514386363893226,"score_gpt":0.28949228907367713,"score_spread":0.25897790270978394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135006856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99980396,0.00004559789,0.000032771815,0.000007705426,0.0000020454956,0.0000048910747,0.000044141627,0.000001431433,0.000057617894],"genre_scores_gemma":[0.9993697,0.00011949918,0.00020544408,0.000023074183,0.000004041387,0.000004621932,0.00013450577,7.9738703e-7,0.00013835363],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99972373,0.000038828035,0.00002423899,0.000070682945,0.00006453285,0.00007806822],"domain_scores_gemma":[0.9996344,0.00004855561,0.0001637204,0.00001785139,0.00005598169,0.0000794235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038607317,0.00037679842,0.00023075455,0.0008819662,0.00058238965,0.00036919134,0.0002769188,0.00033379006,0.00063528295],"category_scores_gemma":[0.00031393263,0.00030161653,0.00028436878,0.00059087004,0.0004702962,0.000186189,0.00024640077,0.00021963548,0.00008071409],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013307027,0.00008611218,0.991655,0.00003472173,0.000022827513,0.0010690503,0.0005793093,0.000050335966,0.0032089672,0.000013667026,0.00010299588,0.0030440358],"study_design_scores_gemma":[0.0000049539663,0.00023818994,0.9972843,0.0000065487147,0.000012693441,0.0007126028,0.0011538876,0.00006276956,0.00032293273,0.0000066440753,0.0001903184,0.000004067803],"about_ca_topic_score_codex":0.011920952,"about_ca_topic_score_gemma":0.019935364,"teacher_disagreement_score":0.011920952,"about_ca_system_score_codex":0.0005408747,"about_ca_system_score_gemma":0.0005530672,"threshold_uncertainty_score":0.023703158},"labels":[],"label_agreement":null},{"id":"W2139420850","doi":"10.1186/1471-2180-12-36","title":"Shigella flexneriutilize the spectrin cytoskeleton during invasion and comet tail generation","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Erythrocyte Function and Pathophysiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Michael Smith Health Research BC","keywords":"Spectrin; Shigella flexneri; Cytoskeleton; Biology; Cell biology; Actin; Actin cytoskeleton; Shigella; Microbiology; Cell; Genetics; Bacteria; Gene; Salmonella; Escherichia coli","score_opus":0.042565593697517265,"score_gpt":0.26203801308666363,"score_spread":0.21947241938914636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139420850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956955,0.00074131705,0.002198304,0.00011008956,0.000012811654,0.000015208964,0.000116406016,0.000049419268,0.0010610393],"genre_scores_gemma":[0.9964478,0.00025822356,0.0009740572,0.000038635084,0.0000041682856,0.000020973044,0.00019777342,0.000010390611,0.0020479765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999114,0.000011395861,0.000005613957,0.000018167964,0.000024672758,0.000028741415],"domain_scores_gemma":[0.9999068,0.000008944707,0.000029738874,0.000009313077,0.000020060517,0.000025220912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001428283,0.000257016,0.000151559,0.00018025594,0.0001866921,0.00022437079,0.00012842045,0.00035891688,0.0017693555],"category_scores_gemma":[0.00012908514,0.00011033454,0.00018358823,0.000063368156,0.00019990955,0.0002565403,0.00036309907,0.00029545953,0.000466004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078075944,0.0000053814683,0.0006257091,0.000025210593,0.0000024173485,0.000057923375,0.00002954168,0.000018192743,0.99854016,0.00005176505,0.000032367185,0.0005332059],"study_design_scores_gemma":[0.0000115522835,0.0001316878,0.036277566,0.000011527807,0.000011895349,0.0002746057,0.000104394705,0.0006753519,0.96117914,0.000095240925,0.0012228506,0.0000041739527],"about_ca_topic_score_codex":0.00031875537,"about_ca_topic_score_gemma":0.00046342803,"teacher_disagreement_score":0.0017693555,"about_ca_system_score_codex":0.00030172322,"about_ca_system_score_gemma":0.00012641224,"threshold_uncertainty_score":0.005919099},"labels":[],"label_agreement":null},{"id":"W2139739054","doi":"10.1186/1471-2180-12-232","title":"Effect of environmental stress factors on the uptake and survival of Campylobacter jejuni in Acanthamoeba castellanii","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Strategic Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Campylobacter jejuni; Acanthamoeba; Parasitology; Microbiology; Campylobacter; Zoology; Bacteria; Genetics","score_opus":0.012751059604121324,"score_gpt":0.24789727183378824,"score_spread":0.23514621222966692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139739054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99670756,0.00127824,0.00019183238,0.00009066559,0.00003983236,0.00003085727,0.00050462136,0.000028091043,0.0011283408],"genre_scores_gemma":[0.99625707,0.00052540266,0.0008218457,0.00009175813,0.000019005265,0.000047680773,0.0008356003,0.000013192527,0.001388435],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998274,0.000026297697,0.000010858213,0.000033069682,0.00004937552,0.000053052485],"domain_scores_gemma":[0.99974746,0.000073612835,0.00004564526,0.000019768633,0.000055665547,0.000057812336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010295643,0.0005246621,0.00041205875,0.0002502595,0.00028514117,0.00037108234,0.00024353823,0.00031981495,0.0010366569],"category_scores_gemma":[0.0002440836,0.00013286888,0.00021777148,0.000170081,0.0002438189,0.00020240505,0.0003236521,0.0005039856,0.00018071904],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044096916,0.0001370096,0.0013611055,0.0001566002,0.000010113024,0.00007098346,0.00006755902,0.00006186323,0.995989,0.0000200342,0.000070205264,0.0016145855],"study_design_scores_gemma":[0.00003103541,0.0031216112,0.18245405,0.000041066723,0.00006510605,0.0002732892,0.00052241783,0.0014594638,0.80864924,0.00009540508,0.0032476757,0.00003965354],"about_ca_topic_score_codex":0.005121226,"about_ca_topic_score_gemma":0.006998803,"teacher_disagreement_score":0.005121226,"about_ca_system_score_codex":0.000592869,"about_ca_system_score_gemma":0.00033750417,"threshold_uncertainty_score":0.0101828575},"labels":[],"label_agreement":null},{"id":"W2139880587","doi":"10.1186/s12866-015-0401-0","title":"Candidate proteomic biomarkers for three genogroups of the swine pathogen Streptococcus suis serotype 2","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre de Recherche Industrielle du Québec; Université de Montréal; Fonds de Recherche du Québec - Santé; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Chiang Mai University","keywords":"Biology; Multilocus sequence typing; Microbiology; Streptococcus suis; Pathogen; Serotype; Gene; Genetics; Genotype; Virulence","score_opus":0.04445627792007227,"score_gpt":0.2906306003905297,"score_spread":0.2461743224704574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139880587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989717,0.0002299683,0.00039088365,0.000022855487,0.0000067333385,0.000010287541,0.00021829657,0.000007404815,0.00014178087],"genre_scores_gemma":[0.9961623,0.00020330738,0.0023070034,0.0000485032,0.000011815032,0.000023994826,0.0009787807,0.0000031986172,0.00026128796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987364,0.000017323555,0.000011166468,0.000032712487,0.000037427588,0.000027714636],"domain_scores_gemma":[0.99978536,0.000027649097,0.00009158617,0.0000067889882,0.00005123564,0.000037412792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029268113,0.0005705147,0.00022817335,0.0007780015,0.00016428647,0.00047255887,0.00012179074,0.00045115448,0.00067414815],"category_scores_gemma":[0.00038968114,0.00009707503,0.0002734569,0.00045297883,0.00018097303,0.0001937988,0.0002442144,0.00018353152,0.00016122541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000770612,0.00017042005,0.29126465,0.00016167392,0.00009088497,0.00023708139,0.000139632,0.00025622244,0.6986087,0.000065614804,0.00022981981,0.008004787],"study_design_scores_gemma":[0.00003080082,0.0011772211,0.8852953,0.000026146274,0.000110376895,0.0010348002,0.0003936833,0.0032510872,0.10745215,0.00012479877,0.0010909537,0.000012733103],"about_ca_topic_score_codex":0.0005308072,"about_ca_topic_score_gemma":0.0007029886,"teacher_disagreement_score":0.0007780015,"about_ca_system_score_codex":0.00019800362,"about_ca_system_score_gemma":0.00016913717,"threshold_uncertainty_score":0.002255261},"labels":[],"label_agreement":null},{"id":"W2140084299","doi":"10.1186/1471-2180-10-219","title":"Characterization and functional analysis of seven flagellin genes in Rhizobium leguminosarum bv. viciae. Characterization of R. leguminosarum flagellins","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; University of Calgary","keywords":"Flagellin; Biology; Rhizobium leguminosarum; Flagellum; Microbiology; Rhizobia; Genetics; Gene; Symbiosis; Rhizobiaceae; Bacteria","score_opus":0.012201302270354954,"score_gpt":0.1978696086645248,"score_spread":0.18566830639416984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140084299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962534,0.00083440833,0.00085889274,0.000073531155,0.0000068653803,0.000028190047,0.0014099475,0.000018458293,0.00051625445],"genre_scores_gemma":[0.983529,0.00043871446,0.0035451266,0.00009776205,0.00000948616,0.00005068313,0.0105222855,0.000034328477,0.0017725818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974066,0.00003383612,0.000029292025,0.000061825034,0.00007723539,0.000057155474],"domain_scores_gemma":[0.99963975,0.000055181703,0.00012659027,0.00003787212,0.000067789195,0.00007278881],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020430365,0.00062612497,0.0003034096,0.0004974294,0.00013896993,0.00023152544,0.00029715223,0.0003609529,0.0005692681],"category_scores_gemma":[0.00039072396,0.0002007278,0.00062213565,0.00044262043,0.00019518778,0.00016545497,0.00027810998,0.00039795123,0.0005478447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050131395,0.000017005836,0.0007100451,0.000038508988,0.0000039531587,0.000045019508,0.000026596847,0.00002458753,0.9982798,0.000011222819,0.000008451657,0.00078473386],"study_design_scores_gemma":[0.00007818433,0.0011665111,0.2740522,0.000055029435,0.00017624859,0.0037296617,0.00037991517,0.0017070556,0.7110481,0.00013754019,0.007443612,0.000026000409],"about_ca_topic_score_codex":0.0032090493,"about_ca_topic_score_gemma":0.0021153702,"teacher_disagreement_score":0.0032090493,"about_ca_system_score_codex":0.00047999035,"about_ca_system_score_gemma":0.00025043736,"threshold_uncertainty_score":0.006380737},"labels":[],"label_agreement":null},{"id":"W2141618962","doi":"10.1186/1471-2180-9-142","title":"Assessing the suitability of antibiotic resistance markers and the indirect ELISA technique for studying the competitive ability of selected Cyclopia Vent. rhizobia under glasshouse and field conditions in South Africa","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Foundation; International Development Research Centre","keywords":"Rhizobia; Biology; Antibiotic resistance; Microbial inoculant; Cyclopia; Spectinomycin; Resistance (ecology); Biotechnology; Microbiology; Antibiotics; Nitrogen fixation; Horticulture; Agronomy; Bacteria; Genetics; Inoculation","score_opus":0.019973262101518927,"score_gpt":0.25163835054889266,"score_spread":0.23166508844737374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141618962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988495,0.00014720407,0.0004411484,0.000010953649,0.000002935241,0.000032219137,0.00015740261,0.0000051455127,0.00035344312],"genre_scores_gemma":[0.9951497,0.00026291132,0.0031176833,0.00001836829,0.0000039387382,0.000059360387,0.00052147894,0.000005649806,0.0008609735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99963415,0.000058292342,0.00003651444,0.00012455757,0.00009481563,0.00005170388],"domain_scores_gemma":[0.9994566,0.00017171311,0.00018357237,0.00003525931,0.00009781157,0.000054978776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003209625,0.00046887816,0.00026696484,0.0005052598,0.0002456998,0.00033417472,0.00033224205,0.00029749493,0.0006645208],"category_scores_gemma":[0.00046028767,0.00022354357,0.00018791403,0.00034113385,0.00021840485,0.00020328155,0.00023830871,0.00024903964,0.00018479215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015897772,0.00007240232,0.012758561,0.00006420421,0.000009701125,0.00008359939,0.00016683697,0.000031969765,0.9849337,0.00000913024,0.000010167749,0.0017007984],"study_design_scores_gemma":[0.00002752056,0.0036386435,0.40481904,0.00003616506,0.00011139155,0.001042807,0.0010335932,0.0007410663,0.58737594,0.000027281667,0.0011200443,0.000026473586],"about_ca_topic_score_codex":0.005244179,"about_ca_topic_score_gemma":0.010680327,"teacher_disagreement_score":0.005244179,"about_ca_system_score_codex":0.00029346094,"about_ca_system_score_gemma":0.00019894795,"threshold_uncertainty_score":0.010427296},"labels":[],"label_agreement":null},{"id":"W2143549946","doi":"10.1186/1471-2180-11-141","title":"The non-motile phenotype of Salmonella hha ydgT mutants is mediated through PefI-SrgD","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research","keywords":"Biology; Flagellum; Mutant; Phenotype; Virulence; Salmonella enterica; Pathogenicity island; Microbiology; Gene; Motility; Regulator; Regulation of gene expression; Salmonella; Genetics; Cell biology; Bacteria; Escherichia coli","score_opus":0.017246208270258474,"score_gpt":0.22103173429381218,"score_spread":0.2037855260235537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143549946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818844,0.0000931432,0.0011185103,0.00003568544,0.000004778891,0.000006699547,0.00019731828,0.000050884253,0.00030455002],"genre_scores_gemma":[0.99683905,0.000076991695,0.0012982625,0.000020063731,0.000002036365,0.000015150417,0.00041322198,0.000030023584,0.0013052495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999912,0.000010948895,0.000010163951,0.000017298615,0.000029799472,0.000019821291],"domain_scores_gemma":[0.9998349,0.000026081449,0.000062740495,0.000019851072,0.0000135310065,0.000042865064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008587944,0.00038582683,0.00014423566,0.00018004533,0.000082643855,0.0001819083,0.00020532166,0.00020804015,0.0012008208],"category_scores_gemma":[0.000080216414,0.00013741372,0.00019587798,0.000087068845,0.00024138487,0.00009621116,0.00030312798,0.00038803392,0.0003707768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003232676,0.000006335266,0.00017513923,0.000008099582,0.0000014593334,0.000018247332,0.0000031564468,0.000014347622,0.9995307,0.000016855804,0.0000056769895,0.00018774274],"study_design_scores_gemma":[0.000015391288,0.00014745687,0.012608759,0.0000036920808,0.000009360329,0.0003167442,0.000024638945,0.000819049,0.98548186,0.000026854197,0.00054194464,0.0000042362385],"about_ca_topic_score_codex":0.0008396007,"about_ca_topic_score_gemma":0.0011695721,"teacher_disagreement_score":0.0012008208,"about_ca_system_score_codex":0.0002643001,"about_ca_system_score_gemma":0.00021282648,"threshold_uncertainty_score":0.0040171742},"labels":[],"label_agreement":null},{"id":"W2144838524","doi":"10.1186/1471-2180-11-60","title":"High throughput MLVA-16 typing for Brucella based on the microfluidics technology","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"European Defence Agency","keywords":"Multiple Loci VNTR Analysis; Brucella; Typing; Biology; Genotyping; Subtyping; Variable number tandem repeat; Biovar; Computational biology; Brucellosis; Genetics; Virology; Computer science; Genotype; Gene","score_opus":0.1387927015941492,"score_gpt":0.31703419078957185,"score_spread":0.17824148919542265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144838524","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47881994,0.006106155,0.4983737,0.0006927139,0.00077235117,0.0009092501,0.0030655074,0.006533771,0.0047266176],"genre_scores_gemma":[0.6085829,0.0022690147,0.37958267,0.00047933887,0.00021552484,0.00085314433,0.0028385713,0.00015272145,0.005026107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804085,0.00024878344,0.00017695207,0.00043760362,0.00097446237,0.000121506084],"domain_scores_gemma":[0.998801,0.00045580594,0.00023037038,0.00017966193,0.00026696332,0.00006618993],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013038564,0.0007230517,0.00072007865,0.0011163502,0.00031158837,0.00087098347,0.0009270219,0.00077856256,0.0011021707],"category_scores_gemma":[0.0015947175,0.00044996134,0.0006284272,0.00050008507,0.00033643216,0.00067647116,0.00082392927,0.0005964772,0.0007925281],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013157762,0.00010040654,0.005391012,0.00031991125,0.000058832356,0.00012323225,0.0001291857,0.0010386315,0.9525523,0.00041666318,0.0009323289,0.03880588],"study_design_scores_gemma":[0.000022410157,0.00066600554,0.01318288,0.00006751971,0.0001406774,0.0008848681,0.0000493296,0.019714909,0.95075613,0.0003466337,0.0140454145,0.00012316892],"about_ca_topic_score_codex":0.00041468005,"about_ca_topic_score_gemma":0.0006745643,"teacher_disagreement_score":0.0013038564,"about_ca_system_score_codex":0.000425651,"about_ca_system_score_gemma":0.00048448157,"threshold_uncertainty_score":0.0068954825},"labels":[],"label_agreement":null},{"id":"W2145007277","doi":"10.1186/1471-2180-14-61","title":"Cigarette smoke condensate increases C. albicans adhesion, growth, biofilm formation, and EAP1, HWP1 and SAP2 gene expression","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Université Laval","keywords":"Biofilm; Corpus albicans; Microbiology; Adhesion; Candida albicans; Biology; Periodontitis; Cigarette smoke; Bacteria; Chemistry; Medicine; Internal medicine; Toxicology; Genetics","score_opus":0.02227935846023598,"score_gpt":0.266048119915981,"score_spread":0.243768761455745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145007277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973456,0.0015882716,0.00029646652,0.00006665953,0.00003006581,0.000021319813,0.00015429461,0.000016524224,0.0004807613],"genre_scores_gemma":[0.9958982,0.0011466438,0.00063630455,0.00008093544,0.000024157616,0.00003730282,0.00030281677,0.0000062904696,0.001867502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999877,0.000019300158,0.0000105623285,0.000018553452,0.00004619256,0.000028290016],"domain_scores_gemma":[0.99981433,0.00007275946,0.000032309796,0.0000141639985,0.000030396042,0.000036112444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000143898,0.00029354967,0.00023349244,0.0002746544,0.00013927717,0.00024967323,0.00009370299,0.00029633858,0.0023981484],"category_scores_gemma":[0.00020219114,0.00014821363,0.00034814278,0.00016092714,0.00016645378,0.00012024754,0.00019535628,0.00042066886,0.00019452022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050188747,0.00013859777,0.002031336,0.00006334506,0.000011918189,0.00003533193,0.000027109236,0.000016970951,0.99469405,0.000017221575,0.000048301452,0.0024137835],"study_design_scores_gemma":[0.000028658833,0.002079825,0.08397775,0.000018533538,0.00005872721,0.00016494174,0.000109034176,0.00045974544,0.912192,0.000039760358,0.00086381845,0.0000072042967],"about_ca_topic_score_codex":0.0008907591,"about_ca_topic_score_gemma":0.0013675159,"teacher_disagreement_score":0.0023981484,"about_ca_system_score_codex":0.00017583105,"about_ca_system_score_gemma":0.00020848634,"threshold_uncertainty_score":0.008022666},"labels":[],"label_agreement":null},{"id":"W2145199081","doi":"10.1186/1471-2180-12-105","title":"Matrix metalloproteinase 9 contributes to gut microbe homeostasis in a model of infectious colitis","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto","keywords":"Biology; Citrobacter rodentium; Colitis; Microbiome; Immunology; Inflammatory bowel disease; Microbiology; Dysbiosis; Intestinal mucosa; Intestinal permeability; Feces; Gut flora; Pathogenesis; Pathology; Internal medicine; Disease; Medicine; Bioinformatics","score_opus":0.009639450427808921,"score_gpt":0.2478658284183104,"score_spread":0.23822637799050148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145199081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332774,0.0018737684,0.0029981208,0.00030743532,0.00008418708,0.00012238546,0.00043949403,0.00013504578,0.00071184384],"genre_scores_gemma":[0.9915348,0.0011767239,0.004897219,0.00009186459,0.000028743601,0.0001664351,0.0005203864,0.000024907535,0.0015589138],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995016,0.00011339787,0.000045571673,0.000110624904,0.0001126639,0.0001161836],"domain_scores_gemma":[0.9993824,0.00004194381,0.00025243737,0.000068549176,0.00004746741,0.00020729472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005171438,0.0011380396,0.0004935182,0.0007337941,0.00026750015,0.00061064266,0.00051016407,0.0007396886,0.0014874211],"category_scores_gemma":[0.00033025065,0.00027591264,0.00055470987,0.0003147895,0.000576855,0.00038356244,0.00037046286,0.001959701,0.00035759175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013229818,0.00057560345,0.0012814276,0.00012601491,0.000022783357,0.00019758378,0.000028680044,0.000099767996,0.99407876,0.00009613884,0.00008090732,0.0020894168],"study_design_scores_gemma":[0.00032272466,0.009732582,0.050006006,0.000103750404,0.00019631127,0.003049573,0.00016624437,0.0033542905,0.9289686,0.00030493358,0.003761235,0.000033661887],"about_ca_topic_score_codex":0.00027962678,"about_ca_topic_score_gemma":0.00041200494,"teacher_disagreement_score":0.0014874211,"about_ca_system_score_codex":0.00052984775,"about_ca_system_score_gemma":0.0002988358,"threshold_uncertainty_score":0.0049759746},"labels":[],"label_agreement":null},{"id":"W2148392907","doi":"10.1186/1471-2180-13-160","title":"Widespread acquisition of antimicrobial resistance among Campylobacter isolates from UK retail poultry and evidence for clonal expansion of resistant lineages","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Biotechnology and Biological Sciences Research Council; University of Oxford; Food Standards Agency; Wellcome Trust","keywords":"Biology; Campylobacter; Antibiotic resistance; Multilocus sequence typing; Campylobacter coli; Microbiology; Antimicrobial; Erythromycin; Tetracycline; Campylobacteriosis; Population; Campylobacter jejuni; Ciprofloxacin; Antibiotics; Genetics; Genotype; Bacteria; Gene","score_opus":0.03702454894556813,"score_gpt":0.24625445377768576,"score_spread":0.20922990483211762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148392907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991698,0.00023237638,0.00009738241,0.000020625914,0.0000016371985,0.000009385036,0.00017233472,0.0000028139807,0.00029360983],"genre_scores_gemma":[0.9992508,0.000136977,0.00014497168,0.00002028034,0.0000025566521,0.0000054756633,0.00022997991,0.0000017032567,0.00020727773],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99933404,0.00008599577,0.000100673955,0.00022289956,0.00016868205,0.000087729364],"domain_scores_gemma":[0.9980621,0.00029122658,0.00092427817,0.000109434324,0.0004245735,0.00018857232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029959407,0.00024336787,0.00028007795,0.001069654,0.0003716447,0.00072125613,0.00023833575,0.00046395912,0.0023645037],"category_scores_gemma":[0.0013221817,0.0002684777,0.0001467893,0.0010588943,0.00047076785,0.0002919515,0.00058694603,0.0003279971,0.00037124616],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000253423,0.000038946157,0.9611619,0.00014003704,0.000028408338,0.00088081165,0.0011650189,0.00005488518,0.029270982,0.000015784666,0.00013803793,0.006851746],"study_design_scores_gemma":[0.0000033675083,0.00014926806,0.9965024,0.000024328192,0.0000133119465,0.0014602352,0.0005687119,0.000035612935,0.0009724097,0.000006442912,0.0002599096,0.000004082223],"about_ca_topic_score_codex":0.013802476,"about_ca_topic_score_gemma":0.019725123,"teacher_disagreement_score":0.013802476,"about_ca_system_score_codex":0.00039719188,"about_ca_system_score_gemma":0.00020783771,"threshold_uncertainty_score":0.027444243},"labels":[],"label_agreement":null},{"id":"W2150126068","doi":"10.1186/1471-2180-13-277","title":"atpE gene as a new useful specific molecular target to quantify Mycobacterium in environmental samples","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Centre National de la Recherche Scientifique; McGill University Health Centre; McGill University","keywords":"Biology; In silico; Mycobacterium; Genome; Computational biology; Housekeeping gene; Gene; Ribosomal RNA; Genetics; Bacteria","score_opus":0.025840452209752552,"score_gpt":0.2641122941755928,"score_spread":0.23827184196584023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150126068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72982097,0.00957629,0.25432116,0.00052151876,0.00021314571,0.00037301774,0.0017482332,0.0009908369,0.0024349422],"genre_scores_gemma":[0.67705137,0.002194821,0.31480038,0.00036897048,0.000057785863,0.000569778,0.0021379222,0.00013629143,0.0026827457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895334,0.00024856057,0.00005720493,0.00038485264,0.0002817463,0.00007426733],"domain_scores_gemma":[0.9994324,0.00024656157,0.00011444753,0.000042319185,0.00011534317,0.000048872404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008286376,0.00082349905,0.0006998022,0.0009984418,0.00021487442,0.00063387956,0.00040874878,0.0013241709,0.0010207474],"category_scores_gemma":[0.000843983,0.0003757877,0.00048016905,0.00061878265,0.00057852664,0.0005035515,0.00040583618,0.0006649896,0.00083615805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006582015,0.000041806445,0.0013973784,0.00016956094,0.0000083857485,0.000051391187,0.000027583059,0.00015012526,0.99353456,0.000049863607,0.000040563307,0.004462879],"study_design_scores_gemma":[0.00001526593,0.00042499515,0.009105278,0.000044140335,0.000056823003,0.00076235627,0.00005756315,0.005648002,0.9804944,0.00016778319,0.0032059366,0.000017416492],"about_ca_topic_score_codex":0.00013169606,"about_ca_topic_score_gemma":0.0002620234,"teacher_disagreement_score":0.0013241709,"about_ca_system_score_codex":0.00021881756,"about_ca_system_score_gemma":0.00019074914,"threshold_uncertainty_score":0.0043823123},"labels":[],"label_agreement":null},{"id":"W2150328671","doi":"10.1186/1471-2180-9-25","title":"A Candida albicans early stage biofilm detachment event in rich medium","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Biology; Candida albicans; Biofilm; Microbiology; Parasitology; Event (particle physics); Zoology; Bacteria; Genetics","score_opus":0.01612765873335166,"score_gpt":0.2934012863035282,"score_spread":0.27727362757017654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150328671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992902,0.00077969953,0.0031746216,0.00016013005,0.000051093342,0.00007163384,0.0014513673,0.00008369288,0.0013256283],"genre_scores_gemma":[0.9873274,0.00047817137,0.0058402917,0.00023221437,0.000021258717,0.00012338883,0.0029445786,0.000030281395,0.003002319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980384,0.000013149083,0.0000109988205,0.000048305774,0.00008230116,0.000041385472],"domain_scores_gemma":[0.9998142,0.000055140776,0.000031621952,0.000022761262,0.000042111868,0.000034253295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119179065,0.00033379995,0.0004870396,0.00017384457,0.0002651466,0.0005030265,0.00024421277,0.0004232125,0.0010550965],"category_scores_gemma":[0.00017760672,0.00014578276,0.0003897547,0.0002596826,0.0001684024,0.00022526058,0.00036663585,0.0011592408,0.0004966491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018164703,0.000038868413,0.0005335155,0.000044679582,0.000003960893,0.00007793892,0.000027851453,0.000044738765,0.9980709,0.000027375083,0.0001021185,0.00084650447],"study_design_scores_gemma":[0.000015341757,0.0005371968,0.07326249,0.00002365966,0.000020326543,0.00023328388,0.00014328984,0.0020248252,0.92185503,0.00009010576,0.0017729414,0.000021514608],"about_ca_topic_score_codex":0.0014607378,"about_ca_topic_score_gemma":0.0015481507,"teacher_disagreement_score":0.0014607378,"about_ca_system_score_codex":0.00048746387,"about_ca_system_score_gemma":0.00033737597,"threshold_uncertainty_score":0.0035368204},"labels":[],"label_agreement":null},{"id":"W2150930304","doi":"10.1186/1471-2180-11-86","title":"The analysis of para-cresol production and tolerance in Clostridium difficile 027 and 012 strains","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Wellcome Trust","keywords":"Clostridium difficile; Biology; Microbiology; Operon; Mutant; p-Cresol; Cresol; Antibiotics; Strain (injury); Gut flora; Gene; Biochemistry; Chemistry; Phenol","score_opus":0.048623231015616455,"score_gpt":0.2918825116348762,"score_spread":0.24325928061925978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150930304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975852,0.00023909149,0.00057537167,0.0000341423,0.0000141071705,0.000051325813,0.00089489523,0.000014251005,0.0005916372],"genre_scores_gemma":[0.9896521,0.0003225764,0.0030212067,0.00006646686,0.000016674816,0.00012159014,0.0051543587,0.000043337644,0.0016016039],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940753,0.000085092855,0.00007684134,0.000106840234,0.00022511212,0.00009860415],"domain_scores_gemma":[0.9994253,0.00012153859,0.0001368544,0.00005958286,0.00015823783,0.00009848101],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002848105,0.000753556,0.00034233,0.0005759669,0.00018729939,0.00045470134,0.00053356774,0.00053947885,0.00081636186],"category_scores_gemma":[0.00048040322,0.00016944727,0.00063204323,0.0008084487,0.0002605228,0.00014776757,0.0003933961,0.0005612444,0.00050545705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021525653,0.00020597455,0.0036190967,0.0000676302,0.000020216088,0.00016320054,0.00007686055,0.000055198318,0.9942211,0.00002800977,0.000030019391,0.0012975361],"study_design_scores_gemma":[0.0000520982,0.0034847313,0.13882565,0.000025502268,0.0001817248,0.002722331,0.0006576071,0.00083846814,0.8503166,0.000055464487,0.0027987228,0.000041085215],"about_ca_topic_score_codex":0.002988109,"about_ca_topic_score_gemma":0.0015152112,"teacher_disagreement_score":0.002988109,"about_ca_system_score_codex":0.00024967513,"about_ca_system_score_gemma":0.00030880346,"threshold_uncertainty_score":0.005941391},"labels":[],"label_agreement":null},{"id":"W2151349254","doi":"10.1186/1471-2180-13-176","title":"An easy, simple inexpensive test for the specific detection of Pectobacterium carotovorum subsp. carotovorum based on sequence analysis of the pmrA gene","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie","keywords":"Pectobacterium carotovorum; Pectobacterium; Biology; Subspecies; Phylogenetic tree; Microbiology; Genetic diversity; 16S ribosomal RNA; Pathogen; Sequence analysis; Genetics; Gene; Population; Ecology","score_opus":0.02936356773475413,"score_gpt":0.22308277736997925,"score_spread":0.19371920963522513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151349254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8365884,0.009115914,0.13374282,0.0008781984,0.00063349376,0.0014312215,0.0045496444,0.0013424562,0.0117179025],"genre_scores_gemma":[0.75376266,0.0042406586,0.22578976,0.00056521624,0.00016665827,0.0012393995,0.0056192726,0.00010434013,0.008511983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985733,0.00027685787,0.00008721512,0.000356237,0.00057334127,0.00013302572],"domain_scores_gemma":[0.999243,0.00020585224,0.00019499104,0.000057157322,0.00021305433,0.00008593908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007364264,0.0012220732,0.0006051326,0.0021099406,0.00023208682,0.000419308,0.00051890383,0.0011548195,0.0020597568],"category_scores_gemma":[0.000963093,0.000348585,0.00040005828,0.000791375,0.0003924299,0.00042477407,0.0006215033,0.0006553867,0.0018330056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005371429,0.00008891524,0.005546172,0.00014805315,0.000016453629,0.00011870226,0.000056169505,0.000025375934,0.9858847,0.0000375691,0.00015663364,0.007867616],"study_design_scores_gemma":[0.000046989222,0.0026863466,0.13344623,0.00019169052,0.00017825227,0.0058791796,0.0006115962,0.003158799,0.8402003,0.0003031598,0.013228255,0.000069119444],"about_ca_topic_score_codex":0.0004152204,"about_ca_topic_score_gemma":0.0010216322,"teacher_disagreement_score":0.0021099406,"about_ca_system_score_codex":0.00014870713,"about_ca_system_score_gemma":0.00023238685,"threshold_uncertainty_score":0.006890595},"labels":[],"label_agreement":null},{"id":"W2151680163","doi":"10.1186/1471-2180-12-41","title":"Antistaphylococcal activity of bacteriophage derived chimeric protein P128","year":2012,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Lysostaphin; Staphylococcus aureus; Microbiology; Bacteriophage; Biology; Staphylococcal infections; Bacteria; Virology; Escherichia coli; Biochemistry","score_opus":0.012055007073228484,"score_gpt":0.23214898581141744,"score_spread":0.22009397873818895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151680163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645567,0.00048321954,0.002204003,0.00003817763,0.000013078407,0.000027988597,0.00025974706,0.000036995967,0.00048125873],"genre_scores_gemma":[0.99284345,0.00029127958,0.0042402195,0.000027563006,0.000007384685,0.000042775348,0.0012563439,0.000016781318,0.001274187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988484,0.000022928953,0.000011201739,0.000022980705,0.000039277256,0.000018738034],"domain_scores_gemma":[0.9998616,0.00003656314,0.00004687293,0.000015998972,0.000018641456,0.000020381332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001761106,0.00046750295,0.00015572051,0.00015553531,0.00006133336,0.00015577323,0.00019137454,0.00025785124,0.0006361385],"category_scores_gemma":[0.00021586359,0.000061193154,0.00024228041,0.00012318896,0.00016840722,0.00011718823,0.00017511078,0.00039012288,0.0002271343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006860606,0.00001992514,0.00010482248,0.000021358685,0.000002995321,0.000026996713,0.0000046386954,0.000058947804,0.9990688,0.000019309731,0.000016227272,0.00058740954],"study_design_scores_gemma":[0.0000130182325,0.00062738196,0.0015088014,0.0000052862124,0.000008562828,0.00035283924,0.000008431021,0.0008263573,0.99563724,0.000015772252,0.0009932827,0.0000030350868],"about_ca_topic_score_codex":0.00030655242,"about_ca_topic_score_gemma":0.0002069974,"teacher_disagreement_score":0.0006361385,"about_ca_system_score_codex":0.0002305043,"about_ca_system_score_gemma":0.0001717285,"threshold_uncertainty_score":0.0021280646},"labels":[],"label_agreement":null},{"id":"W2153236664","doi":"10.1186/1471-2180-14-94","title":"The requirement for the LysR-type regulator PtrA for Pseudomonas chlororaphis PA23 biocontrol revealed through proteomic and phenotypic analysis","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Pseudomonas chlororaphis; Mutant; Sinorhizobium meliloti; Response regulator; Genetics; Microbiology; Pseudomonas; Gene; Bacteria","score_opus":0.02554734598405888,"score_gpt":0.2453640465744991,"score_spread":0.2198167005904402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153236664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965348,0.00042981436,0.0016708435,0.00008081166,0.000008601089,0.000020519086,0.0007795361,0.00007271346,0.00040232204],"genre_scores_gemma":[0.9959021,0.00019707992,0.0019421562,0.0000335051,0.000006871906,0.000038300535,0.0013842258,0.000034512832,0.00046114906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982446,0.000015016348,0.000015206721,0.000042094714,0.00007735509,0.000025814814],"domain_scores_gemma":[0.9996859,0.000048223807,0.00012021412,0.000035761917,0.00005985688,0.00005006474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011809034,0.0005724835,0.0003536506,0.0003180605,0.0001666221,0.0005155052,0.00028205666,0.0003899682,0.00064685894],"category_scores_gemma":[0.0003162689,0.00015257778,0.00029195845,0.000281202,0.00022692239,0.00025458957,0.00029888426,0.00038290702,0.00049728266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033167427,0.000008686021,0.00023639048,0.00001530304,0.000001908282,0.000043350534,0.000005850028,0.000013849955,0.9993562,0.000005523336,0.000006249359,0.00027357985],"study_design_scores_gemma":[0.000018392839,0.00025358563,0.053146876,0.000011377965,0.000043780226,0.0016177336,0.00014406523,0.0015256113,0.9421218,0.000051779516,0.0010441736,0.000020798552],"about_ca_topic_score_codex":0.0010544062,"about_ca_topic_score_gemma":0.00085721025,"teacher_disagreement_score":0.0010544062,"about_ca_system_score_codex":0.00025150552,"about_ca_system_score_gemma":0.0002602785,"threshold_uncertainty_score":0.0021639466},"labels":[],"label_agreement":null},{"id":"W2153619211","doi":"10.1186/1471-2180-13-221","title":"The SseC translocon component in Salmonella enterica serovar Typhimurium is chaperoned by SscA","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; McMaster University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Salmonella enterica; Serotype; Microbiology; Salmonella; Zoology; Bacteria; Genetics","score_opus":0.01137725135801615,"score_gpt":0.1939548515630091,"score_spread":0.18257760020499295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153619211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981287,0.00042978476,0.0008554414,0.00007052443,0.000018743229,0.0000044631297,0.00017999824,0.00003772209,0.00027459834],"genre_scores_gemma":[0.99749494,0.00013020457,0.0007342663,0.000030534706,0.0000044500143,0.0000054501033,0.0007435936,0.000007981757,0.000848622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999145,0.000010516721,0.0000075366756,0.000019410714,0.00002324488,0.000024755282],"domain_scores_gemma":[0.99979264,0.0000142749,0.00006520557,0.000016666323,0.000045938614,0.00006530644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010102767,0.00031191265,0.00014786934,0.00022026271,0.00017020266,0.00021747309,0.00016801457,0.0003004304,0.0009846677],"category_scores_gemma":[0.00015137803,0.00010590971,0.0003676484,0.00016340082,0.0001780564,0.00011704361,0.00032796396,0.00022286002,0.0005561419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102110775,0.000014263667,0.00204019,0.000044790195,0.0000075101684,0.00013398651,0.000017488148,0.00006800708,0.99670285,0.000044886747,0.00008703118,0.0007368745],"study_design_scores_gemma":[0.000034511377,0.0007384595,0.1678625,0.000042697633,0.00008078767,0.0034401773,0.0003042962,0.004900051,0.81384134,0.0001892768,0.008544423,0.00002146724],"about_ca_topic_score_codex":0.0012537309,"about_ca_topic_score_gemma":0.001396524,"teacher_disagreement_score":0.0012537309,"about_ca_system_score_codex":0.00029619873,"about_ca_system_score_gemma":0.0002408878,"threshold_uncertainty_score":0.0032940507},"labels":[],"label_agreement":null},{"id":"W2155097679","doi":"10.1186/1471-2180-13-175","title":"Spatial distributions of Pseudomonas fluorescens colony variants in mixed-culture biofilms","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Biofilm; Biology; Pseudomonas fluorescens; Wild type; Phenotype; Colonization; Microbiology; Colony morphology; Mutant; Genetics; Bacteria; Gene","score_opus":0.007393092453416649,"score_gpt":0.21553391138733255,"score_spread":0.2081408189339159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155097679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99664634,0.00042103874,0.0021143253,0.000021797743,0.0000045174947,0.000015842703,0.00023932707,0.00002944777,0.00050742546],"genre_scores_gemma":[0.99626946,0.00019883405,0.0028862723,0.00001207044,0.0000040094055,0.00003248955,0.0002610991,0.000008359778,0.00032736114],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996972,0.000021758799,0.000021878193,0.00008318067,0.0001231883,0.000052685704],"domain_scores_gemma":[0.9995245,0.00009708624,0.00011721127,0.000025230125,0.00016287953,0.00007312843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018343635,0.00019565846,0.00021469913,0.0007725647,0.00018726742,0.0004938758,0.00024599515,0.000251974,0.0005816987],"category_scores_gemma":[0.00039442122,0.00018035994,0.00014942334,0.00041318455,0.00018857095,0.00021896303,0.0004207663,0.00034308783,0.00018152884],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020403186,0.00004667399,0.017091863,0.000049457525,0.00001944886,0.00009708011,0.00017931173,0.00019901185,0.9782437,0.000075360666,0.00005993528,0.0037340708],"study_design_scores_gemma":[0.0000236105,0.00073275063,0.4582528,0.000024443989,0.000089577625,0.0016453866,0.0009129615,0.005011873,0.5318782,0.000191,0.0011872151,0.000050307473],"about_ca_topic_score_codex":0.0021916223,"about_ca_topic_score_gemma":0.0021494024,"teacher_disagreement_score":0.0021916223,"about_ca_system_score_codex":0.00022619421,"about_ca_system_score_gemma":0.00018249862,"threshold_uncertainty_score":0.0043576956},"labels":[],"label_agreement":null},{"id":"W2157191900","doi":"10.1186/1471-2180-11-19","title":"Longitudinal characterization of antimicrobial resistance genes in feces shed from cattle fed different subtherapeutic antibiotics","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge; University of Calgary; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Public Health Agency","keywords":"Biology; Tylosin; Feces; Persistence (discontinuity); Chlortetracycline; Antibiotic resistance; Microbiology; 16S ribosomal RNA; Antimicrobial; Veterinary medicine; Temperature gradient gel electrophoresis; Antibiotics; Bacteria; Genetics","score_opus":0.04346830842680645,"score_gpt":0.25117408996020923,"score_spread":0.2077057815334028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157191900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99944085,0.000112398,0.00019602016,0.0000053173694,0.0000014891237,0.0000068190875,0.00014965683,0.0000027317078,0.00008487774],"genre_scores_gemma":[0.9982014,0.00014742036,0.0006143291,0.000024493813,0.0000040173563,0.000022841588,0.00051136076,0.0000028886138,0.000471197],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976176,0.000038069833,0.000013682953,0.0000653418,0.00007185687,0.0000492587],"domain_scores_gemma":[0.9993272,0.00009393082,0.00027091228,0.00002430751,0.0001887037,0.000095001895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029296475,0.00019903561,0.000337248,0.0003473897,0.00017203546,0.0003988696,0.00013107815,0.00026581305,0.0004870612],"category_scores_gemma":[0.0004577944,0.00012430534,0.00017713233,0.00029064118,0.00019106094,0.00018548607,0.00014189762,0.00033636804,0.00012453776],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014298107,0.000194988,0.12637873,0.00007376691,0.000045952507,0.00007005123,0.00026309516,0.000085818254,0.8654102,0.000011034882,0.000038772872,0.005997963],"study_design_scores_gemma":[0.0000119847045,0.0032856467,0.8999098,0.000016160577,0.000080892714,0.00021369662,0.00047657502,0.0003469492,0.095099814,0.000016798092,0.0005321088,0.000009716984],"about_ca_topic_score_codex":0.0014607871,"about_ca_topic_score_gemma":0.00213405,"teacher_disagreement_score":0.0014607871,"about_ca_system_score_codex":0.00023924097,"about_ca_system_score_gemma":0.00015896677,"threshold_uncertainty_score":0.002904594},"labels":[],"label_agreement":null},{"id":"W2157898656","doi":"10.1186/1471-2180-9-180","title":"Adherent-invasive Escherichia coli, strain LF82 disrupts apical junctional complexes in polarized epithelia","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation","keywords":"Biology; Microbiology; Tight junction; Epithelium; Pathogenesis; Intestinal mucosa; Escherichia coli; Cell biology; Intestinal epithelium; Cell junction; Cytoplasm; Cell; Immunology","score_opus":0.018887550283687778,"score_gpt":0.28326973851602494,"score_spread":0.26438218823233717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157898656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978217,0.00040203426,0.0011142055,0.0000553951,0.0000090781095,0.000010680399,0.00010402571,0.000021915152,0.00046097583],"genre_scores_gemma":[0.99761117,0.00020875485,0.0011302134,0.000065148786,0.000004472931,0.000016210553,0.00020484469,0.000008311216,0.0007509436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997943,0.000036149555,0.000018790699,0.000026010892,0.000068950176,0.000055677072],"domain_scores_gemma":[0.99989617,0.000016565866,0.000036056586,0.000015028227,0.000016030514,0.000020294985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012235611,0.00029434724,0.00017737132,0.00012217587,0.00015552834,0.00031944775,0.00017475401,0.00032722065,0.00073311996],"category_scores_gemma":[0.00011681738,0.0001105144,0.00015852523,0.00010006172,0.0001511647,0.00018618119,0.00020382635,0.00041384422,0.00034675273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030529493,0.000021181595,0.00017848118,0.000014015689,0.00000235035,0.000028934252,0.000007039598,0.000015905865,0.9994765,0.000013659012,0.000010949783,0.00020046711],"study_design_scores_gemma":[0.000009974238,0.00036351057,0.014497037,0.000010385929,0.000011651995,0.00032109095,0.00008917352,0.0010733595,0.98256797,0.000025972686,0.0010269257,0.0000030985448],"about_ca_topic_score_codex":0.00075770076,"about_ca_topic_score_gemma":0.0007621036,"teacher_disagreement_score":0.00075770076,"about_ca_system_score_codex":0.00026876226,"about_ca_system_score_gemma":0.0001433588,"threshold_uncertainty_score":0.0024524927},"labels":[],"label_agreement":null},{"id":"W2159808736","doi":"10.1186/1471-2180-13-132","title":"Members of the Sinorhizobium meliloti ChvI regulon identified by a DNA binding screen","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; McMaster University","keywords":"Regulon; Biology; Sinorhizobium meliloti; Repressor; Alphaproteobacteria; Genetics; Gene; Regulator; Regulation of gene expression; Activator (genetics); Transcriptional regulation; Transcription (linguistics); Mutant; Computational biology; Cell biology; Transcription factor","score_opus":0.011666149020621266,"score_gpt":0.1887205972780473,"score_spread":0.17705444825742603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159808736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98736715,0.0010641883,0.003872528,0.00007382198,0.000013448804,0.000118341966,0.0057844906,0.00015506361,0.0015510895],"genre_scores_gemma":[0.96900684,0.0007262506,0.010923773,0.00008495845,0.000010893666,0.00013691417,0.016555253,0.000038950522,0.0025161544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997553,0.000021788057,0.000019151248,0.000059112426,0.000092976596,0.000051580217],"domain_scores_gemma":[0.9997185,0.000079412,0.00007493487,0.000020991114,0.000041667463,0.00006443215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022027659,0.00080015144,0.00033609985,0.0011570035,0.0002516348,0.00027090654,0.00037807884,0.00038024414,0.0019790141],"category_scores_gemma":[0.00024354472,0.00015597492,0.00035047135,0.00080184825,0.00017321251,0.00011508132,0.00032532663,0.00030994552,0.0007863363],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013671612,0.000029900088,0.0011332836,0.00004584236,0.0000059958184,0.00006837439,0.000015145244,0.000023163066,0.9973896,0.00001770802,0.000032166645,0.0011021527],"study_design_scores_gemma":[0.00004968733,0.0008206823,0.10323809,0.000020916226,0.00014139128,0.0017188573,0.00016281955,0.00096781476,0.88817835,0.00008305206,0.0045980057,0.000020420966],"about_ca_topic_score_codex":0.0014108656,"about_ca_topic_score_gemma":0.0038316883,"teacher_disagreement_score":0.0019790141,"about_ca_system_score_codex":0.00031782498,"about_ca_system_score_gemma":0.00033453875,"threshold_uncertainty_score":0.0066204667},"labels":[],"label_agreement":null},{"id":"W2159809801","doi":"10.1186/1471-2180-9-218","title":"A novel inhibitor of Chlamydophila pneumoniae protein kinase D (PknD) inhibits phosphorylation of CdsD and suppresses bacterial replication","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Chlamydophila pneumoniae; Biology; Parasitology; Phosphorylation; Protein kinase inhibitor; Kinase; Microbiology; Virology; Replication (statistics); Protein kinase A; Chlamydia; Chlamydiaceae; Cell biology; Immunology","score_opus":0.019711943062845287,"score_gpt":0.2669531193477013,"score_spread":0.24724117628485598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159809801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98215854,0.008889552,0.0051369555,0.00016542758,0.00013174504,0.000157004,0.00043915247,0.00020771482,0.0027140137],"genre_scores_gemma":[0.98371387,0.005166533,0.007141816,0.00010616334,0.000033631008,0.00013318405,0.00081758585,0.000017579383,0.0028696037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999336,0.00000818256,0.000008425099,0.000012919871,0.000015549302,0.000021344293],"domain_scores_gemma":[0.99994624,0.000013322076,0.000011852369,0.0000045347574,0.000008066589,0.000016019609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012281457,0.00047367933,0.00037030326,0.0001664049,0.00014633943,0.00019469095,0.00034141578,0.00028823962,0.0009468204],"category_scores_gemma":[0.00009607071,0.00013387573,0.00022430962,0.00010401874,0.00014819994,0.0001205405,0.00013229858,0.00050593907,0.0002331714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005784244,0.00026024124,0.00022838764,0.00020092115,0.000020372903,0.00009158006,0.000009004086,0.00020289674,0.9913327,0.00008409832,0.00015175353,0.0068396204],"study_design_scores_gemma":[0.00043165017,0.0024448002,0.003330188,0.00001641217,0.00006290217,0.00083407166,0.000007932874,0.002115082,0.98377496,0.000025590956,0.0069477744,0.0000086811315],"about_ca_topic_score_codex":0.00047972068,"about_ca_topic_score_gemma":0.0011904796,"teacher_disagreement_score":0.0009468204,"about_ca_system_score_codex":0.00036732174,"about_ca_system_score_gemma":0.0003070614,"threshold_uncertainty_score":0.0031674504},"labels":[],"label_agreement":null},{"id":"W2161092838","doi":"10.1186/1471-2180-13-141","title":"Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis","year":2013,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"State Key Laboratory of Infectious Disease Prevention and Control","keywords":"Biology; Streptococcus bovis; Virulence; Diarrhea; Microbiology; Streptococcus; Feces; Streptococcus agalactiae; Etiology; Parasitology; Bacteria; Gene; Genetics; Medicine; Zoology; Internal medicine","score_opus":0.005786824938264073,"score_gpt":0.21670733550036933,"score_spread":0.21092051056210526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161092838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9998274,0.000038542654,0.000028246452,0.000007903181,4.724822e-7,0.0000023471293,0.0000518657,0.000001499858,0.000041770836],"genre_scores_gemma":[0.9995623,0.000044719472,0.00017066092,0.000009303336,0.0000019671388,0.0000051567486,0.0001673514,0.0000012464202,0.00003722268],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999813,0.000025003974,0.00001536017,0.00004948021,0.000038189064,0.000058960835],"domain_scores_gemma":[0.9994319,0.00008126748,0.0002668165,0.000018383282,0.00008582656,0.00011582383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018769824,0.00024435113,0.0002163843,0.0008846552,0.00035820864,0.00032141263,0.00017438762,0.00023039269,0.0006684347],"category_scores_gemma":[0.0009001979,0.0001841373,0.0001849321,0.0006885336,0.00032062456,0.00021700372,0.00036578177,0.0003208683,0.00008275497],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014875439,0.00002489551,0.9902171,0.000024259067,0.000011789203,0.0004363073,0.0004958061,0.00005568775,0.0066260477,0.000010479397,0.000049783303,0.0018992058],"study_design_scores_gemma":[0.0000036760798,0.00009802548,0.99751854,0.000005248044,0.000009357471,0.0008978714,0.0005509421,0.000139226,0.00067025766,0.000006473959,0.00009838765,0.0000020787568],"about_ca_topic_score_codex":0.0075029247,"about_ca_topic_score_gemma":0.006897189,"teacher_disagreement_score":0.0075029247,"about_ca_system_score_codex":0.00060777785,"about_ca_system_score_gemma":0.0003933687,"threshold_uncertainty_score":0.014918506},"labels":[],"label_agreement":null},{"id":"W2161265653","doi":"10.1186/s12866-015-0494-5","title":"Comparative analysis of multiple inducible phages from Mannheimia haemolytica","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada","funders":"Genome Alberta; Alberta Innovates; Agriculture Funding Consortium","keywords":"Biology; Prophage; Genome; Microbiology; Gene; Serotype; Lysogenic cycle; Hemolysin; Bacteriophage; Virology; Virulence; Genetics; Escherichia coli","score_opus":0.10844858854628563,"score_gpt":0.34209965866641057,"score_spread":0.23365107012012493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161265653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99576735,0.0005559417,0.0012834972,0.0000228766,0.0000112660955,0.000028951958,0.0015648371,0.000027798409,0.0007375476],"genre_scores_gemma":[0.9780096,0.0005915067,0.005072835,0.00007680291,0.000020040741,0.000089145884,0.013681903,0.00005201798,0.0024061184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979466,0.000021862887,0.000018786119,0.00005800035,0.000058027457,0.00004860412],"domain_scores_gemma":[0.9995548,0.00013743721,0.00011243482,0.000032519623,0.000093168914,0.000069596994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017830291,0.00036476128,0.0002673974,0.0007329436,0.00015563084,0.00041670376,0.00020652919,0.00022561113,0.00096618105],"category_scores_gemma":[0.00031432227,0.00011063301,0.0005619906,0.00065786083,0.00014268741,0.00017894658,0.00037732054,0.0005280745,0.0003868662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021690725,0.00003514792,0.0015045546,0.00009777988,0.00001183952,0.000049312617,0.0000668631,0.000024362349,0.99628687,0.00002574861,0.000018853685,0.0016617024],"study_design_scores_gemma":[0.00003432505,0.0020714875,0.24698068,0.000044728487,0.00018572235,0.0012097695,0.0003966248,0.00064924126,0.7436575,0.000078561,0.0046673855,0.000023941297],"about_ca_topic_score_codex":0.00073625275,"about_ca_topic_score_gemma":0.0005799742,"teacher_disagreement_score":0.00096618105,"about_ca_system_score_codex":0.00023845915,"about_ca_system_score_gemma":0.00020209956,"threshold_uncertainty_score":0.0032322407},"labels":[],"label_agreement":null},{"id":"W2163317700","doi":"10.1186/1471-2180-14-125","title":"Real-time PCR assays for genotyping of Cryptococcus gattii in North America","year":2014,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Cryptococcus gattii; Genotyping; Biology; Outbreak; Multilocus sequence typing; Typing; Molecular epidemiology; Polymerase chain reaction; Cryptococcus; Virology; Genotype; Genetics; Gene","score_opus":0.01796677509951084,"score_gpt":0.26524227855332577,"score_spread":0.24727550345381494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163317700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7782219,0.016291471,0.17917575,0.0016072722,0.0004889123,0.0019296622,0.008203407,0.0024792254,0.0116024455],"genre_scores_gemma":[0.6808742,0.0050126216,0.29702932,0.0009843041,0.00011350234,0.002188918,0.00842597,0.00014724843,0.005223882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961021,0.0010040408,0.00026544888,0.00088705466,0.0015538769,0.00018752244],"domain_scores_gemma":[0.9974074,0.0009060496,0.00078426785,0.00020780298,0.0006129925,0.00008146222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029816537,0.00072036526,0.00056627084,0.0012909042,0.0003821263,0.0009076491,0.00092768803,0.00097526907,0.001150883],"category_scores_gemma":[0.003501726,0.00055021816,0.00036498564,0.000984722,0.0006665476,0.00046649043,0.00045333887,0.0009346834,0.00069613947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058902026,0.00031730474,0.06387731,0.00069060945,0.00006607049,0.00022516739,0.0006922646,0.0014159018,0.8579809,0.00041881332,0.0020737064,0.07165294],"study_design_scores_gemma":[0.00021458736,0.0025331585,0.2691908,0.0007199837,0.0003788055,0.005058812,0.0012586934,0.034335434,0.62069654,0.0018908826,0.06352291,0.00019946414],"about_ca_topic_score_codex":0.0027737303,"about_ca_topic_score_gemma":0.0067928396,"teacher_disagreement_score":0.0029816537,"about_ca_system_score_codex":0.0007955635,"about_ca_system_score_gemma":0.0008258629,"threshold_uncertainty_score":0.015768647},"labels":[],"label_agreement":null},{"id":"W2163631730","doi":"10.1186/1471-2180-11-47","title":"The SspA subtilisin-like protease of Streptococcus suis triggers a pro-inflammatory response in macrophages through a non-proteolytic mechanism","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Sciences and Engineering Research Council of Canada; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Secretion; Microbiology; CCL5; Chemokine; Cytokine; Molecular biology; Immunology; Inflammation; Immune system; Biochemistry; T cell","score_opus":0.03416498102200165,"score_gpt":0.27951340884160236,"score_spread":0.2453484278196007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163631730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99457836,0.0026968473,0.001706078,0.00013908278,0.000029096034,0.000034862438,0.0001991906,0.000020273426,0.0005962747],"genre_scores_gemma":[0.99622643,0.00092809094,0.0017362561,0.000073899006,0.000028813718,0.00004566096,0.0002776354,0.0000027837907,0.0006803447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997993,0.000056012235,0.000025191039,0.000022872962,0.000055844383,0.00004071764],"domain_scores_gemma":[0.99988925,0.000028122216,0.00003271431,0.000012536819,0.00001705232,0.000020349577],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029729787,0.00037587623,0.00028462024,0.00016655317,0.000113031245,0.00020116982,0.00010549796,0.0003336908,0.00089441834],"category_scores_gemma":[0.0001483686,0.00008022682,0.00039929472,0.00013974184,0.00019603418,0.00017004402,0.00017677835,0.00041490523,0.00025066404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016491838,0.000038081464,0.0004384479,0.000084467116,0.0000056022186,0.00009231597,0.00001128091,0.000020648078,0.9983271,0.000021684407,0.000015676429,0.0007797656],"study_design_scores_gemma":[0.000030664356,0.0014446873,0.012130499,0.000019135863,0.000023170522,0.00080897176,0.000058307047,0.0004785055,0.9836638,0.000076865545,0.0012613139,0.000003912883],"about_ca_topic_score_codex":0.00013985886,"about_ca_topic_score_gemma":0.00022095811,"teacher_disagreement_score":0.00089441834,"about_ca_system_score_codex":0.00014475577,"about_ca_system_score_gemma":0.00016767975,"threshold_uncertainty_score":0.0029921532},"labels":[],"label_agreement":null},{"id":"W2163750401","doi":"10.1186/1471-2180-10-250","title":"Identification of Burkholderia mallei and Burkholderia pseudomallei adhesins for human respiratory epithelial cells","year":2010,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; College of Veterinary Medicine, University of Georgia; National Institutes of Health; University of Georgia","keywords":"Biology; Burkholderia pseudomallei; Microbiology; Bacterial adhesin; Burkholderia; Gene; Fimbria; Melioidosis; Escherichia coli; Genetics; Bacteria","score_opus":0.024217691703810596,"score_gpt":0.2882146360747267,"score_spread":0.2639969443709161,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163750401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923822,0.0019378129,0.0036748475,0.0001445249,0.000022252143,0.0001253258,0.00084769155,0.00005026606,0.0008150732],"genre_scores_gemma":[0.9843769,0.0011095804,0.008476742,0.00009461567,0.00001850217,0.00008809593,0.003523723,0.000009543704,0.0023022592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998498,0.000024056857,0.000019136134,0.000027004064,0.00004826121,0.000031644435],"domain_scores_gemma":[0.99982196,0.00003230314,0.000029066354,0.000026314412,0.000053658572,0.000036688514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018370696,0.0002113966,0.0001697827,0.00039248864,0.00019625915,0.00039379005,0.00015502375,0.00036398112,0.0014064937],"category_scores_gemma":[0.0002870278,0.00009751825,0.00028612072,0.00029842355,0.000110187866,0.00014252737,0.00032191712,0.00027197925,0.0006753735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008853747,0.00002089172,0.001974292,0.00004147064,0.0000048335037,0.000086376785,0.000031982643,0.000009367688,0.99626094,0.000027434402,0.000025084011,0.0014287744],"study_design_scores_gemma":[0.000029574014,0.0009029294,0.15179059,0.000048096474,0.00007172501,0.0041620517,0.0005782163,0.0014717219,0.8292356,0.00008982588,0.011604884,0.000014721513],"about_ca_topic_score_codex":0.0009864983,"about_ca_topic_score_gemma":0.0013503002,"teacher_disagreement_score":0.0014064937,"about_ca_system_score_codex":0.00015438782,"about_ca_system_score_gemma":0.00020438859,"threshold_uncertainty_score":0.0047051907},"labels":[],"label_agreement":null},{"id":"W2165167163","doi":"10.1186/1471-2180-11-205","title":"Role of EscU auto-cleavage in promoting type III effector translocation into host cells by enteropathogenic Escherichia coli","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Dalhousie University; Dalhousie Medical Research Foundation","keywords":"Effector; Secretion; Biology; Chaperone (clinical); Enteropathogenic Escherichia coli; Cleavage (geology); Type three secretion system; Cell biology; Transport protein; Escherichia coli; Virulence; Biochemistry; Gene","score_opus":0.009001700479239464,"score_gpt":0.23145859609673153,"score_spread":0.22245689561749207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165167163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822444,0.0003473187,0.0008492374,0.000027934162,0.000004427796,0.000008652032,0.00008519288,0.000025505684,0.00042726492],"genre_scores_gemma":[0.99851793,0.00011085487,0.00074643263,0.000017362165,0.0000016898771,0.000006859443,0.0001377496,0.000008928875,0.00045216366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986327,0.0000390088,0.000016200624,0.000017047272,0.000032852804,0.000031491505],"domain_scores_gemma":[0.9998079,0.000057225097,0.00004426088,0.000033236607,0.000021886102,0.000035570247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014303601,0.00030682932,0.00019777947,0.000109058616,0.00009267627,0.0003801135,0.000136037,0.00029311367,0.0006566328],"category_scores_gemma":[0.0001870497,0.000099306024,0.00018647646,0.00008401358,0.00015674783,0.00017434706,0.00030098946,0.00033580378,0.00034482888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001447445,0.000036196787,0.0005641678,0.000027130056,0.0000034424336,0.00012315741,0.000011107385,0.00006847673,0.9980426,0.000056365578,0.000014964733,0.0009076102],"study_design_scores_gemma":[0.000006423709,0.00015539122,0.006176475,0.0000050319295,0.000006244244,0.00034932626,0.00002933958,0.001138343,0.9917223,0.000023491215,0.00038435974,0.000003236948],"about_ca_topic_score_codex":0.0001846412,"about_ca_topic_score_gemma":0.00016437986,"teacher_disagreement_score":0.0006566328,"about_ca_system_score_codex":0.00022121002,"about_ca_system_score_gemma":0.00012610391,"threshold_uncertainty_score":0.0021966696},"labels":[],"label_agreement":null},{"id":"W2166544628","doi":"10.1186/1471-2180-9-71","title":"Bacillus anthracis in China and its relationship to worldwide lineages","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Science and Technology Directorate; U.S. Department of Homeland Security","keywords":"Biology; Multiple Loci VNTR Analysis; Bacillus anthracis; Genotype; Lineage (genetic); Typing; Genetics; Haplotype; Multilocus sequence typing; Locus (genetics); Evolutionary biology; Gene; Genotyping","score_opus":0.016970589330167003,"score_gpt":0.2802408468983758,"score_spread":0.2632702575682088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166544628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851817,0.0002792809,0.00005402997,0.00004229144,0.0000026951577,0.000004894092,0.00012764178,0.0000027277492,0.0009681841],"genre_scores_gemma":[0.9993948,0.00013673867,0.000047959522,0.000012911887,0.000003809012,0.000003317087,0.00020722377,8.7836236e-7,0.0001923701],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996234,0.00004977023,0.000032689026,0.00009001539,0.00009069526,0.0001134025],"domain_scores_gemma":[0.99897194,0.000107989676,0.00037656567,0.00007595776,0.0002292921,0.00023831603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066945987,0.00023506183,0.00019851176,0.0017503285,0.0005830306,0.00052973186,0.00024691768,0.00021501623,0.0015445579],"category_scores_gemma":[0.00078774214,0.00011283362,0.00020424869,0.00287051,0.0003861203,0.00029487672,0.000541984,0.0002169731,0.0001322156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054530316,0.00001374545,0.9903043,0.00001719696,0.00003242884,0.0001749177,0.0004739875,0.000115323375,0.0009978118,0.00012473283,0.00008686746,0.0076041752],"study_design_scores_gemma":[0.0000018764449,0.000021752647,0.9992078,0.00000510456,0.00000793477,0.00011144372,0.00018922087,0.00010588042,0.000058821443,0.00003798392,0.00025065517,0.0000016064049],"about_ca_topic_score_codex":0.020670662,"about_ca_topic_score_gemma":0.023839034,"teacher_disagreement_score":0.020670662,"about_ca_system_score_codex":0.00067021,"about_ca_system_score_gemma":0.0007313163,"threshold_uncertainty_score":0.04110068},"labels":[],"label_agreement":null},{"id":"W2167216473","doi":"10.1186/1471-2180-9-221","title":"Subgingival bacterial colonization profiles correlate with gingival tissue gene expression","year":2009,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canada's Michael Smith Genome Sciences Centre","funders":"National Institute of Dental and Craniofacial Research; National Center for Research Resources; National Institute of General Medical Sciences; Canadian Institutes of Health Research; Michael Smith Health Research BC; Georgia Clinical and Translational Science Alliance; International Association for Dental Research","keywords":"Tannerella forsythia; Biology; Aggregatibacter actinomycetemcomitans; Treponema denticola; Periodontitis; Porphyromonas gingivalis; Actinomyces naeslundii; Actinomyces; Gene expression; Microbiology; Fusobacterium nucleatum; Eikenella corrodens; Dental plaque; Gene; Pathology; Genetics; Dentistry; Bacteria; Medicine","score_opus":0.014595565364145004,"score_gpt":0.2734052307190601,"score_spread":0.25880966535491506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167216473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990767,0.00037436193,0.00020046855,0.000014482712,0.0000020175798,0.000004675743,0.00015917036,0.0000033693952,0.00016468484],"genre_scores_gemma":[0.99855727,0.00028027507,0.00053783617,0.000023564317,0.000007269262,0.000016284928,0.00037682618,0.0000032834573,0.000197423],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997961,0.00002027253,0.000015320147,0.000062714375,0.000048240443,0.000057340014],"domain_scores_gemma":[0.9996401,0.000097731616,0.00013196857,0.000019383746,0.00005037081,0.000060406022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015319457,0.00026284307,0.0002978687,0.00046847563,0.00019897262,0.00045766024,0.00009347346,0.0002860067,0.0018419552],"category_scores_gemma":[0.00039521634,0.00012964827,0.0001968405,0.00043590865,0.00023313006,0.00016623206,0.00032098638,0.00034529268,0.0004612089],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014758275,0.00010539158,0.6051519,0.00014756824,0.000064686974,0.0002233488,0.000353008,0.000105104424,0.38008606,0.000034447577,0.00013476807,0.012117982],"study_design_scores_gemma":[0.000009765745,0.0003376165,0.9868513,0.000009860848,0.00005291808,0.00081355264,0.00035995687,0.00018040917,0.010931779,0.00007229699,0.00037571284,0.0000048109937],"about_ca_topic_score_codex":0.00030540483,"about_ca_topic_score_gemma":0.0004386985,"teacher_disagreement_score":0.0018419552,"about_ca_system_score_codex":0.00011244267,"about_ca_system_score_gemma":0.00011331583,"threshold_uncertainty_score":0.006161988},"labels":[],"label_agreement":null},{"id":"W2170763666","doi":"10.1186/1471-2180-4-13","title":"Expression of a novel gene, gluP, is essential for normal Bacillus subtilis cell division and contributes to glucose export","year":2004,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Regional Cancer Foundation; University of Ottawa","funders":"Universität Konstanz; University of Ottawa","keywords":"Glucokinase; Operon; Biology; PEP group translocation; Bacillus subtilis; Glucose transporter; Permease; L-arabinose operon; Biochemistry; Gene; Snf3; lac operon; gal operon; Gene expression; Cell biology; Genetics; Transporter; Phosphoenolpyruvate carboxykinase; Bacteria; Escherichia coli; Saccharomyces cerevisiae","score_opus":0.007630317779685307,"score_gpt":0.22131393762598334,"score_spread":0.21368361984629802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170763666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98970664,0.00096964184,0.007188878,0.00015961289,0.000055602275,0.000019102587,0.0008232144,0.00021826317,0.0008591387],"genre_scores_gemma":[0.98877954,0.00044965008,0.005724895,0.00008929385,0.000030557312,0.000039925842,0.002872504,0.00011151485,0.0019021153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990976,0.000011193153,0.0000071969525,0.000029404631,0.000026676144,0.000015823915],"domain_scores_gemma":[0.99981743,0.000048270507,0.000038720507,0.000017479719,0.000017821094,0.000060202547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008152383,0.00060762523,0.0002470625,0.00019115498,0.00016044374,0.00036476302,0.0001922299,0.00034508505,0.00095187116],"category_scores_gemma":[0.00019918256,0.0001812694,0.00023086899,0.00015607788,0.00027188307,0.00018640145,0.00030952325,0.0005130539,0.0006059608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010557958,0.000017294848,0.00035701276,0.000038062408,0.0000022055137,0.0003373202,0.0000134955235,0.000037510632,0.9974849,0.000060716793,0.00006255484,0.0014831746],"study_design_scores_gemma":[0.0000533699,0.0003460527,0.022443717,0.000027941525,0.000033203796,0.0032792308,0.00010052979,0.0032531673,0.9658311,0.00022304275,0.004394585,0.00001408757],"about_ca_topic_score_codex":0.00017523889,"about_ca_topic_score_gemma":0.00017507706,"teacher_disagreement_score":0.00095187116,"about_ca_system_score_codex":0.00028222665,"about_ca_system_score_gemma":0.00022860168,"threshold_uncertainty_score":0.003184259},"labels":[],"label_agreement":null},{"id":"W2171443351","doi":"10.1186/1471-2180-6-36","title":"Mutacin H-29B is identical to mutacin II (J-T8)","year":2006,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Université Laval","keywords":"Biology; Parasitology; Medical microbiology; Computational biology; Virology; Zoology","score_opus":0.011342809423088381,"score_gpt":0.20646225288395534,"score_spread":0.19511944346086696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171443351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901017,0.0016407117,0.0042560105,0.00012528428,0.000070588976,0.00006367143,0.0012208038,0.00011683281,0.0024043673],"genre_scores_gemma":[0.9794097,0.00075729145,0.009048629,0.00009909006,0.000024974119,0.00006139775,0.005866132,0.000072193296,0.0046605966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997998,0.000024623794,0.000020712643,0.000050437702,0.00007405934,0.00003042843],"domain_scores_gemma":[0.99972075,0.00002761611,0.00012399518,0.000025962041,0.00004259738,0.000059129437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095146155,0.0005245341,0.0003377992,0.0002697105,0.00017752631,0.0003494624,0.00025205693,0.00031987778,0.0025947825],"category_scores_gemma":[0.00025800001,0.00013612471,0.00039053944,0.00040513542,0.00025377504,0.00018267464,0.00032596028,0.0004935264,0.0018212013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018470905,0.000028517632,0.00048819705,0.00005587833,0.0000064594415,0.00016663011,0.000014685247,0.000033233187,0.9974548,0.000056858727,0.000033820786,0.001476252],"study_design_scores_gemma":[0.000028165514,0.00053136237,0.015663305,0.000026001237,0.00003391618,0.00301381,0.00008397185,0.0003850445,0.97063744,0.000107453576,0.009477669,0.000011987673],"about_ca_topic_score_codex":0.0007568864,"about_ca_topic_score_gemma":0.00035786748,"teacher_disagreement_score":0.0025947825,"about_ca_system_score_codex":0.00021010573,"about_ca_system_score_gemma":0.0002962911,"threshold_uncertainty_score":0.008680344},"labels":[],"label_agreement":null},{"id":"W2172276452","doi":"10.1186/1471-2180-11-186","title":"Identification, structure, and characterization of an exopolysaccharide produced by Histophilus somniduring biofilm formation","year":2011,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Agriculture","keywords":"Biofilm; Microbiology; Biology; Bacteria; Virulence; Polysaccharide; Mannose; Pathogen; Biochemistry; Gene","score_opus":0.02021979624883145,"score_gpt":0.23711687784538465,"score_spread":0.21689708159655322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172276452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966884,0.0006466975,0.0018181385,0.000026008796,0.000011212347,0.00004055937,0.0003516142,0.000009170506,0.00040823434],"genre_scores_gemma":[0.99040705,0.00057808694,0.0062317094,0.00003799361,0.00001100726,0.000053483145,0.001585415,0.000009714753,0.0010855909],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999126,0.000012916457,0.0000103603015,0.000018326238,0.000025199011,0.000020650737],"domain_scores_gemma":[0.99982977,0.000022556887,0.000043441945,0.00001419987,0.000054556833,0.000035487268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016579025,0.0005118462,0.0001662606,0.00027862538,0.00012022667,0.00022246387,0.0001626725,0.00026268698,0.0004346448],"category_scores_gemma":[0.00018194472,0.00012340717,0.00029202193,0.00022943254,0.00014263816,0.00020993834,0.000253731,0.0002520723,0.00023859605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033007345,0.000011136043,0.00071008364,0.0000352998,0.0000032994456,0.00003260762,0.000024548259,0.000013900276,0.9985796,0.000009159351,0.000006607301,0.00054070825],"study_design_scores_gemma":[0.000018311071,0.0006860362,0.12368818,0.00004448396,0.00008091808,0.0008033792,0.00032174573,0.0012507316,0.87050045,0.00007270175,0.0025202024,0.000012896675],"about_ca_topic_score_codex":0.0009277252,"about_ca_topic_score_gemma":0.00068423135,"teacher_disagreement_score":0.0009277252,"about_ca_system_score_codex":0.00015739125,"about_ca_system_score_gemma":0.00017997976,"threshold_uncertainty_score":0.0018447042},"labels":[],"label_agreement":null},{"id":"W2173865653","doi":"10.1186/s12866-015-0598-y","title":"Staphylococcus aureus isolates colonizing and infecting cirrhotic and liver-transplantation patients: comparison of molecular typing and virulence factors","year":2015,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research Manitoba","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Virulence; Biology; SCCmec; Multilocus sequence typing; Microbiology; Typing; Liver transplantation; Staphylococcus aureus; Transplantation; Staphylococcal infections; clone (Java method); Virology; Pulsed-field gel electrophoresis; Methicillin-resistant Staphylococcus aureus; Genotype; Medicine; Gene; Bacteria; Internal medicine; Genetics","score_opus":0.02685954472018592,"score_gpt":0.2821070190511152,"score_spread":0.25524747433092926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2173865653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99966085,0.00013760287,0.00004680161,0.000009057751,0.0000023745345,0.0000038037667,0.000041242412,0.0000012062912,0.000097017844],"genre_scores_gemma":[0.9996045,0.00009120956,0.000104674735,0.000010902356,0.00000632964,0.0000038068986,0.00011634958,7.777906e-7,0.00006149557],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99969673,0.000057479287,0.00005196824,0.00005970941,0.000060723774,0.000073405594],"domain_scores_gemma":[0.9993691,0.00019654479,0.00019646403,0.000028315935,0.00007516444,0.00013444015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022665707,0.0002533314,0.0002715999,0.00089113734,0.00025694666,0.00035193798,0.000092324146,0.00033389288,0.0012398827],"category_scores_gemma":[0.0012328946,0.00013989168,0.00021314266,0.00047778554,0.00022876041,0.0002190902,0.00027153076,0.00024731515,0.00020878114],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043669788,0.00007601122,0.9858627,0.000038341466,0.000033635944,0.00056964805,0.00027228764,0.000042797685,0.008587291,0.00001151996,0.00005760288,0.0040115677],"study_design_scores_gemma":[0.000009538901,0.00039634976,0.99483573,0.000010128516,0.000033451735,0.002828733,0.00035932998,0.00014372526,0.0011851621,0.00001982761,0.00017325966,0.000004790454],"about_ca_topic_score_codex":0.0011296624,"about_ca_topic_score_gemma":0.001092662,"teacher_disagreement_score":0.0012398827,"about_ca_system_score_codex":0.00014799419,"about_ca_system_score_gemma":0.00017094839,"threshold_uncertainty_score":0.004147887},"labels":[],"label_agreement":null},{"id":"W2233519048","doi":"10.1186/s12866-016-0623-9","title":"Relevance of in vitro agar based screens to characterize the anti-fungal activities of bacterial endophyte communities","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Agriculture and Agri-Food Canada; Agricultural Adaptation Council","keywords":"Biology; Endophyte; Sclerotinia sclerotiorum; Rhizoctonia solani; In vitro; Microbiology; Rhizoctonia; Botany","score_opus":0.02686312432637259,"score_gpt":0.21584166407957403,"score_spread":0.18897853975320145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2233519048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90950507,0.0043312223,0.07397625,0.0005586964,0.00020181287,0.0007332354,0.0028548401,0.0005622849,0.0072765457],"genre_scores_gemma":[0.9375956,0.0021576544,0.05302626,0.00029337787,0.000054727647,0.0005166361,0.0027615537,0.000096879536,0.0034973375],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963223,0.0013762488,0.00044489343,0.0004285171,0.0012395055,0.00018857351],"domain_scores_gemma":[0.9912948,0.0036873042,0.0013262059,0.0010300368,0.0022537997,0.00040782054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023896862,0.0015719583,0.00097217056,0.0012274424,0.00032561552,0.0015235186,0.0007681703,0.0008817019,0.0014278895],"category_scores_gemma":[0.003780221,0.00044448586,0.00074832066,0.00096856034,0.00043316197,0.0006835326,0.0011318242,0.001354779,0.0011201532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013314924,0.00027278304,0.009063397,0.0002095711,0.00008007716,0.000060925126,0.00005836982,0.00034028557,0.98548,0.00005271368,0.00008447411,0.0041642613],"study_design_scores_gemma":[0.000019163796,0.0027990288,0.046830844,0.000043912994,0.00025616115,0.00090165425,0.00020378143,0.003542327,0.9427537,0.00016660825,0.0024464035,0.000036451598],"about_ca_topic_score_codex":0.0009346286,"about_ca_topic_score_gemma":0.0018038703,"teacher_disagreement_score":0.0023896862,"about_ca_system_score_codex":0.00038359722,"about_ca_system_score_gemma":0.00054050284,"threshold_uncertainty_score":0.012638032},"labels":[],"label_agreement":null},{"id":"W2271048282","doi":"10.1186/s12866-016-0627-5","title":"Independent mitochondrial and nuclear exchanges arising in Rhizophagus irregularis crossed-isolates support the presence of a mitochondrial segregation mechanism","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Espace pour la vie; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Rhizophagus irregularis; Heteroplasmy; Mitochondrial DNA; Nuclear gene; Genetics; Glomeromycota; Spore; Non-Mendelian inheritance; Nuclear DNA; Botany; Symbiosis; Gene; Mycorrhiza","score_opus":0.011210630151122713,"score_gpt":0.2053120210852387,"score_spread":0.19410139093411596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2271048282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696016,0.00015661004,0.0019793638,0.000015067326,0.0000057771936,0.000027387157,0.00018779321,0.00003549431,0.00063224393],"genre_scores_gemma":[0.9977743,0.000055171204,0.0012299194,0.000012438934,0.0000031705958,0.0000205975,0.00048065843,0.00001733263,0.00040644105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99961805,0.00004688909,0.000052492916,0.00012698508,0.00010513136,0.000050432955],"domain_scores_gemma":[0.9992323,0.00017419756,0.0002833744,0.00013024852,0.0000635859,0.00011631503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021238132,0.00040121053,0.0002704663,0.0004559713,0.00017254835,0.00025656403,0.00036161212,0.00048323808,0.0009134959],"category_scores_gemma":[0.0003498024,0.00015906578,0.00028547356,0.00022529923,0.00028403956,0.00014074425,0.00057160406,0.0005266244,0.0003270354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028304225,0.00001741544,0.0012330851,0.0000103522125,0.000005909538,0.000083515544,0.000024139707,0.000010023389,0.99821484,0.000029286757,0.0000028994664,0.00034020405],"study_design_scores_gemma":[0.000024061173,0.00050737883,0.1541636,0.00001380363,0.00009765485,0.0037287301,0.00021279394,0.0009280825,0.83874595,0.000104151804,0.00145319,0.000020526728],"about_ca_topic_score_codex":0.0003281657,"about_ca_topic_score_gemma":0.00062026066,"teacher_disagreement_score":0.0009134959,"about_ca_system_score_codex":0.0002171275,"about_ca_system_score_gemma":0.00012554695,"threshold_uncertainty_score":0.0030559897},"labels":[],"label_agreement":null},{"id":"W2278380325","doi":"10.1186/s12866-016-0638-2","title":"Fecal prevalence, serotype distribution and antimicrobial resistance of Salmonellae in dairy cattle in central Ethiopia","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fogarty International Center; National Institutes of Health; Public Health Agency; Public Health Agency of Canada; World Health Organization","keywords":"Salmonella; Veterinary medicine; Serotype; Biology; Feces; Nitrofurantoin; Herd; Antibiotic resistance; Tetracycline; Dairy cattle; Microbiology; Antibiotics; Animal science; Medicine","score_opus":0.017576030107572936,"score_gpt":0.2275489673177739,"score_spread":0.20997293721020097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278380325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99960715,0.00010216532,0.000027917184,0.0000073927117,0.0000014357472,0.0000027335957,0.000114238195,9.870015e-7,0.00013596663],"genre_scores_gemma":[0.9995328,0.00011634901,0.00009101265,0.000012109182,0.0000015429225,0.0000033001834,0.0001238466,3.681078e-7,0.00011865771],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976856,0.00005042675,0.000025984089,0.000055103617,0.000034737513,0.00006529714],"domain_scores_gemma":[0.99973375,0.000063981475,0.00007969157,0.000007479369,0.00005359932,0.00006143141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050179474,0.00022389319,0.0001825599,0.0010137651,0.000281569,0.00053526834,0.00024410267,0.00026136346,0.000618788],"category_scores_gemma":[0.00043718165,0.0002238123,0.00012352265,0.0006618025,0.00031952938,0.00019753881,0.00019694715,0.00014136228,0.000115976065],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120360586,0.000056976172,0.99546164,0.000028307893,0.000030369154,0.00026790373,0.00024916232,0.00007572941,0.0017242674,0.000020086554,0.00005999603,0.0019050941],"study_design_scores_gemma":[0.0000072485445,0.00016545274,0.9974069,0.000017215647,0.000017078984,0.00047697607,0.0010350402,0.00014547183,0.00039494538,0.000017838436,0.00031255983,0.000003260402],"about_ca_topic_score_codex":0.009779138,"about_ca_topic_score_gemma":0.01237677,"teacher_disagreement_score":0.009779138,"about_ca_system_score_codex":0.0006043392,"about_ca_system_score_gemma":0.0003504939,"threshold_uncertainty_score":0.019444406},"labels":[],"label_agreement":null},{"id":"W2340057483","doi":"10.1186/s12866-016-0680-0","title":"SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada; Oxford Nanopore Technologies","keywords":"Biology; Genomics; Genome; Whole genome sequencing; Comparative genomics; Computational biology; Genetics; Context (archaeology); Gene","score_opus":0.01609826859124033,"score_gpt":0.25265618109898513,"score_spread":0.2365579125077448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340057483","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14237636,0.0010823676,0.70092905,0.0019638531,0.00020566484,0.0006191953,0.01803972,0.12653194,0.008251867],"genre_scores_gemma":[0.5066456,0.0011636572,0.45500857,0.0008945597,0.00012059178,0.00077765994,0.02749402,0.0042331214,0.0036621934],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99950945,0.00010642196,0.000018183124,0.00014101727,0.00017547455,0.000049315593],"domain_scores_gemma":[0.9988391,0.00069050014,0.00010600064,0.00013055223,0.00012823119,0.000105652056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013897716,0.0009106593,0.0005224598,0.000835632,0.00034884427,0.0011408948,0.0013066815,0.0006373443,0.002961218],"category_scores_gemma":[0.0026709985,0.0003992205,0.000667021,0.000549303,0.00054886914,0.0010703737,0.0017112024,0.0011935801,0.0011348926],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046106195,0.00073986483,0.045133222,0.0017955952,0.0006097831,0.0023848056,0.0012811815,0.16011384,0.24858932,0.04694825,0.09481578,0.39297774],"study_design_scores_gemma":[0.00023006025,0.00068845577,0.016666543,0.0001875773,0.00015929577,0.0009821929,0.0002158283,0.76727766,0.09915596,0.0383679,0.07583056,0.00023804912],"about_ca_topic_score_codex":0.0014907576,"about_ca_topic_score_gemma":0.00097579707,"teacher_disagreement_score":0.002961218,"about_ca_system_score_codex":0.00045074802,"about_ca_system_score_gemma":0.00075900264,"threshold_uncertainty_score":0.009906292},"labels":[],"label_agreement":null},{"id":"W2345436405","doi":"10.1186/s12866-016-0696-5","title":"Characterization and prediction of the mechanism of action of antibiotics through NMR metabolomics","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Deutsche Forschungsgemeinschaft; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Metabolomics; Biology; Antibiotics; Computational biology; Mechanism (biology); Parasitology; Microbiology; Bioinformatics; Zoology","score_opus":0.017368938126454632,"score_gpt":0.22875689741852384,"score_spread":0.21138795929206922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2345436405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9241301,0.0023278256,0.0691172,0.00024304012,0.00001902407,0.0001155547,0.0022020848,0.00028463523,0.0015604974],"genre_scores_gemma":[0.9545216,0.0017128779,0.041741334,0.000052020307,0.000015597967,0.00008108554,0.0013684778,0.000029365277,0.0004776983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998673,0.000025477346,0.000008054868,0.000039217095,0.00004129238,0.000018640423],"domain_scores_gemma":[0.9996921,0.0001255129,0.000084149266,0.000020608963,0.000058956964,0.000018749524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035261942,0.00047718515,0.00030953978,0.00067410315,0.000118984666,0.00039027783,0.00021188475,0.00066237384,0.0007704301],"category_scores_gemma":[0.0006791917,0.0001384904,0.00039709685,0.00046477735,0.00023302872,0.0003494631,0.00017426196,0.0003682839,0.0003261695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025722827,0.000075863936,0.005732983,0.00017625424,0.000026424459,0.000046238278,0.000020063846,0.0034292396,0.9753794,0.00013826757,0.00008751877,0.014630578],"study_design_scores_gemma":[0.000034899862,0.00086025597,0.06516662,0.000029384257,0.00012342598,0.000364288,0.00010868793,0.11786242,0.8125552,0.0007284832,0.0021146894,0.000051681363],"about_ca_topic_score_codex":0.0012129401,"about_ca_topic_score_gemma":0.0010220128,"teacher_disagreement_score":0.0012129401,"about_ca_system_score_codex":0.00028128806,"about_ca_system_score_gemma":0.00029632924,"threshold_uncertainty_score":0.0025773048},"labels":[],"label_agreement":null},{"id":"W2398537901","doi":"10.1186/s12866-016-0711-x","title":"Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Insect and Arachnid Ecology and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Ministère des relations internationales et de la Francophonie; Genome Canada","keywords":"Cellobiose; Biology; Xylose; Biochemistry; Xylose metabolism; Ruminococcus; Xylan; Hemicellulose; Cellulose; Fermentation; Microbiology; Cellulase; Gut flora","score_opus":0.01893460498418662,"score_gpt":0.25736476230072736,"score_spread":0.23843015731654074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2398537901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99412376,0.0005652102,0.0008098907,0.00004868115,0.00001738767,0.000033815224,0.003730097,0.000030231022,0.0006409057],"genre_scores_gemma":[0.9768151,0.00083155977,0.0032520357,0.00012370646,0.000026005691,0.00019087024,0.01527273,0.0000341295,0.0034539322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990594,0.000004247903,0.0000045562747,0.000034065433,0.000024206352,0.000026984828],"domain_scores_gemma":[0.9998845,0.000017215196,0.000027760938,0.000007030339,0.0000314283,0.000031971147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099434605,0.0005636267,0.00045609302,0.00044362934,0.00032730086,0.00041277154,0.00015786152,0.00030101443,0.00050629873],"category_scores_gemma":[0.00015725954,0.00015795759,0.00037733634,0.0007877241,0.0002056322,0.00023345773,0.00026973107,0.00042411857,0.00025565957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028443345,0.000026548,0.0012313989,0.000051645722,0.000006415971,0.000070991,0.00003635883,0.000067124914,0.99731255,0.000014333759,0.000037840204,0.00086043216],"study_design_scores_gemma":[0.000048390186,0.00129837,0.47139034,0.000047274818,0.00015394011,0.0013415064,0.00085448014,0.0048552,0.5153596,0.0001530101,0.004433813,0.00006406294],"about_ca_topic_score_codex":0.0021922605,"about_ca_topic_score_gemma":0.0019553413,"teacher_disagreement_score":0.0021922605,"about_ca_system_score_codex":0.000350461,"about_ca_system_score_gemma":0.0003130817,"threshold_uncertainty_score":0.004359007},"labels":[],"label_agreement":null},{"id":"W2461495609","doi":"10.1186/s12866-016-0749-9","title":"Temporal trends and risks factors for antimicrobial resistant Enterobacteriaceae urinary isolates from outpatients in Guadeloupe","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"European Commission","keywords":"Ciprofloxacin; Microbiology; Antibiotic resistance; Enterobacteriaceae; Cephalosporin; Biology; Amoxicillin; Antibiotics; Klebsiella pneumoniae; Medicine; Escherichia coli","score_opus":0.04214497295253069,"score_gpt":0.29008852812418146,"score_spread":0.24794355517165076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2461495609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979752,0.00047159236,0.000045694196,0.00011084164,0.0000067258707,0.000010071848,0.0011035694,0.000005712556,0.00027062162],"genre_scores_gemma":[0.99851173,0.00040282906,0.00009595424,0.000040302555,0.000007714151,0.000016219123,0.0007770207,0.000004912067,0.00014326963],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924624,0.00009932187,0.000096474505,0.00021859222,0.000121314646,0.00021811557],"domain_scores_gemma":[0.99745256,0.00023102765,0.0013117724,0.000078371006,0.0005111836,0.00041505144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041643652,0.00043731398,0.0004326783,0.0013880824,0.00080799236,0.0009852255,0.00067508325,0.0006844039,0.0019948266],"category_scores_gemma":[0.0019034514,0.00045992737,0.0004548058,0.0025245324,0.00038297405,0.0004539882,0.0008261537,0.00076710817,0.00028049323],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004017274,0.000014876026,0.9980824,0.00003402439,0.000025010351,0.00025634715,0.0003731021,0.00003398019,0.00028567252,0.0000081686185,0.00018950045,0.0006567336],"study_design_scores_gemma":[0.0000010627067,0.000024616626,0.9983827,0.000016543472,0.0000070561855,0.00027003672,0.00100181,0.000038092705,0.000028870358,0.0000019840195,0.00022350969,0.0000036991005],"about_ca_topic_score_codex":0.1419246,"about_ca_topic_score_gemma":0.13493809,"teacher_disagreement_score":0.1419246,"about_ca_system_score_codex":0.0019699456,"about_ca_system_score_gemma":0.0012678728,"threshold_uncertainty_score":0.28219706},"labels":[],"label_agreement":null},{"id":"W2472839120","doi":"10.1186/s12866-016-0742-3","title":"Auxotrophic Actinobacillus pleurpneumoniae grows in multispecies biofilms without the need for nicotinamide-adenine dinucleotide (NAD) supplementation","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Consejo Nacional de Ciencia y Tecnología; Universidad Autónoma de Aguascalientes","keywords":"Actinobacillus pleuropneumoniae; Microbiology; Bordetella bronchiseptica; Biofilm; Biology; Nicotinamide adenine dinucleotide; Nicotinamide mononucleotide; Streptococcus suis; NAD+ kinase; Pasteurella multocida; Bacteria; Pleuropneumonia; Staphylococcus aureus; Actinobacillus; Serotype; Biochemistry; Enzyme; Virulence","score_opus":0.029268014355069216,"score_gpt":0.2867154325223995,"score_spread":0.2574474181673303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2472839120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949922,0.0011036216,0.0015686568,0.00009183577,0.000045374032,0.00006430593,0.00032103053,0.000047455982,0.0017654374],"genre_scores_gemma":[0.98934186,0.00061059,0.0067690974,0.0000645193,0.00002085657,0.00008564619,0.00092632195,0.000017395665,0.0021636998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999556,0.00006944803,0.00006506889,0.000100734826,0.00013012691,0.000078595476],"domain_scores_gemma":[0.9997273,0.000054892123,0.00006462102,0.00003798968,0.000060001617,0.000055227025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030759143,0.00048298782,0.00040928883,0.00023329484,0.00020450809,0.0003497202,0.00035304626,0.00034758053,0.0008220201],"category_scores_gemma":[0.00032574468,0.0001665581,0.0003156743,0.00018618989,0.00011769991,0.00035463256,0.0005754404,0.0003750038,0.00036762533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007327243,0.00007560873,0.00094185874,0.000057512407,0.000005712967,0.00006308447,0.000023526816,0.000029204384,0.9976025,0.000020495067,0.000033324126,0.0010738765],"study_design_scores_gemma":[0.00002308683,0.0020915973,0.028506922,0.00005023763,0.00004111741,0.0009104984,0.0002231684,0.0014598988,0.9637586,0.000067488174,0.0028499393,0.000017407918],"about_ca_topic_score_codex":0.0010357773,"about_ca_topic_score_gemma":0.0015606238,"teacher_disagreement_score":0.0010357773,"about_ca_system_score_codex":0.00017428306,"about_ca_system_score_gemma":0.00030621767,"threshold_uncertainty_score":0.0027498603},"labels":[],"label_agreement":null},{"id":"W2473243329","doi":"10.1186/s12866-016-0743-2","title":"Taxonomic and functional diversity of cultured seed associated microbes of the cucurbit family","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Biology; Endophyte; Botany; Proteobacteria; Firmicutes; Pectate lyase; Bacteria; 16S ribosomal RNA; Biochemistry","score_opus":0.02560866467968328,"score_gpt":0.1819017999676871,"score_spread":0.15629313528800381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2473243329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981554,0.0004403408,0.00018484566,0.000014860792,0.0000046649184,0.000025325318,0.00080181006,0.000011252562,0.0003614946],"genre_scores_gemma":[0.9957937,0.00043541307,0.0014047881,0.000023840426,0.000008268548,0.000049375383,0.001900701,0.000010059143,0.00037377313],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99963677,0.000037418224,0.0000588044,0.00012281394,0.00007800404,0.000066228014],"domain_scores_gemma":[0.999546,0.00005848476,0.00015135674,0.000029818037,0.00013061412,0.000083761406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025426084,0.00057984405,0.00032025977,0.0019557339,0.0004101389,0.0005067226,0.00020791423,0.00024757584,0.0005683968],"category_scores_gemma":[0.00056427444,0.00012795156,0.00026810708,0.0012260064,0.000296092,0.0003047225,0.00048749705,0.00017236336,0.00019175337],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059656956,0.00014916189,0.20761226,0.00043719655,0.00010426423,0.0004760953,0.0014392479,0.00031196635,0.7750494,0.00007766089,0.00014080512,0.01360551],"study_design_scores_gemma":[0.000013660147,0.00065742806,0.9572116,0.00006537695,0.00010573047,0.0014257357,0.0011584403,0.0008406804,0.036942717,0.000051419247,0.0014938347,0.000033461405],"about_ca_topic_score_codex":0.003867348,"about_ca_topic_score_gemma":0.0046961675,"teacher_disagreement_score":0.003867348,"about_ca_system_score_codex":0.00023624505,"about_ca_system_score_gemma":0.0002500203,"threshold_uncertainty_score":0.0076897144},"labels":[],"label_agreement":null},{"id":"W2485384893","doi":"10.1186/s12866-016-0786-4","title":"Genotypic characterization of drug resistant Mycobacterium tuberculosis in Quebec, 2002-2012","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Ste. Anne's Hospital; Public Health Ontario; Université de Montréal; Toronto Public Health","funders":"","keywords":"INHA; rpoB; Biology; Mycobacterium tuberculosis; Drug resistance; Genotype; Tuberculosis; Mutation; Genetics; Virology; Extensively drug-resistant tuberculosis; Multiple drug resistance; Microbiology; Gene; Medicine","score_opus":0.015993017155456254,"score_gpt":0.26768533117917115,"score_spread":0.2516923140237149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2485384893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700235,0.003372299,0.0011457666,0.0005289142,0.000039909955,0.00020057242,0.020647092,0.00006430224,0.003977666],"genre_scores_gemma":[0.9878455,0.0007433448,0.00092174695,0.00020460492,0.000012748087,0.000030263931,0.0068682753,0.000013248584,0.0033604647],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995708,0.000030677198,0.000033184704,0.00011290835,0.00016874987,0.000083743274],"domain_scores_gemma":[0.9984243,0.00007662589,0.00020517108,0.000039624676,0.0010609055,0.00019330661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005006655,0.00027219873,0.00026651676,0.0016900982,0.0010340854,0.0005571996,0.0006779737,0.0003993088,0.0018904237],"category_scores_gemma":[0.0014845754,0.0001272227,0.0002030638,0.0018922674,0.00030679425,0.0001808547,0.00021992339,0.00037365168,0.00023769579],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034252836,0.00010804891,0.9347771,0.00021479139,0.00010116895,0.00059791695,0.0008407775,0.00065787527,0.012024072,0.00012008876,0.0035421744,0.046673536],"study_design_scores_gemma":[0.000006687601,0.000059248327,0.99470717,0.000023212802,0.000021961956,0.00027451984,0.0002273806,0.00038508698,0.00090876635,0.000006087365,0.0033727565,0.000007153098],"about_ca_topic_score_codex":0.9648326,"about_ca_topic_score_gemma":0.97643244,"teacher_disagreement_score":0.035167396,"about_ca_system_score_codex":0.010354867,"about_ca_system_score_gemma":0.0055015646,"threshold_uncertainty_score":0.075130105},"labels":[],"label_agreement":null},{"id":"W2488813265","doi":"10.1186/s12866-016-0780-x","title":"Loss of malic enzymes leads to metabolic imbalance and altered levels of trehalose and putrescine in the bacterium Sinorhizobium meliloti","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Sinorhizobium meliloti; Biology; Trehalose; Malic enzyme; Bacteria; Microbiology; Biochemistry; Putrescine; Enzyme; Genetics; Nitrogen fixation","score_opus":0.018700293285104513,"score_gpt":0.22238849220032797,"score_spread":0.20368819891522347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2488813265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99798006,0.00033763767,0.00064029364,0.00006646445,0.000013116814,0.000010139756,0.00057907973,0.00005082756,0.00032244294],"genre_scores_gemma":[0.9972709,0.00017737524,0.0006922787,0.000034700297,0.0000047164795,0.000017186449,0.0009608442,0.000033285036,0.00080871425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997603,0.000034255896,0.000031105687,0.00004759794,0.00006764793,0.000059046015],"domain_scores_gemma":[0.9996674,0.00005440116,0.00012384122,0.00004396474,0.00003232896,0.00007811654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013941736,0.0007184398,0.00042480647,0.0002737149,0.00015666729,0.00034755914,0.0003038212,0.00045314748,0.0005371238],"category_scores_gemma":[0.00019155108,0.00024334838,0.00036745676,0.00026701883,0.00029382377,0.0001953589,0.00034266876,0.0004998935,0.00029603162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012233433,0.000017777817,0.0002783001,0.000014019834,0.000005107268,0.000045020723,0.00001004392,0.000033710185,0.99927837,0.0000111330855,0.000007860118,0.00017624327],"study_design_scores_gemma":[0.000025444317,0.00047572775,0.02507345,0.0000076721135,0.00003754245,0.00037700802,0.00015205854,0.0014689517,0.9716039,0.000056503308,0.00070458493,0.000017162094],"about_ca_topic_score_codex":0.0035467679,"about_ca_topic_score_gemma":0.0033785738,"teacher_disagreement_score":0.0035467679,"about_ca_system_score_codex":0.00048589078,"about_ca_system_score_gemma":0.00031585852,"threshold_uncertainty_score":0.0070522428},"labels":[],"label_agreement":null},{"id":"W2505017202","doi":"10.1186/s12866-016-0782-8","title":"Determining Streptococcus suis serotype from short-read whole-genome sequencing data","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; University of Toronto; Public Health Ontario","funders":"Public Health Ontario; University of Toronto","keywords":"Biology; Streptococcus suis; Serotype; Multilocus sequence typing; Whole genome sequencing; Typing; Genome; Genetics; In silico; Computational biology; Virulence; Microbiology; Gene","score_opus":0.12028571339241921,"score_gpt":0.3306494156806578,"score_spread":0.21036370228823859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2505017202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80280477,0.00046498032,0.15817563,0.00013144597,0.00005223152,0.00026863941,0.029895384,0.006166865,0.002039946],"genre_scores_gemma":[0.65193653,0.00032205656,0.28292656,0.00017061857,0.000022903723,0.00021292345,0.06272476,0.00074650807,0.00093713944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993123,0.000104050145,0.0000773081,0.00025326575,0.00020003432,0.00005309868],"domain_scores_gemma":[0.9981013,0.00070152996,0.000354868,0.00026435105,0.00048459167,0.00009332917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00130907,0.0007915972,0.00049470906,0.0014631101,0.00031057466,0.00080906216,0.00042241585,0.00045097672,0.0013677588],"category_scores_gemma":[0.0037975193,0.000352488,0.00079336116,0.0012362706,0.00022117945,0.0004657515,0.000538339,0.00049556687,0.0011491402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010531208,0.00025926964,0.18612675,0.001068259,0.00043885413,0.00035738078,0.00057529437,0.016517067,0.6859835,0.00086708524,0.0043767886,0.10237663],"study_design_scores_gemma":[0.000079353325,0.00062955846,0.29446644,0.0001279591,0.00040432138,0.0007358147,0.00027879703,0.19097885,0.49072126,0.0030366126,0.018408952,0.00013210006],"about_ca_topic_score_codex":0.0019388989,"about_ca_topic_score_gemma":0.0033897674,"teacher_disagreement_score":0.0019388989,"about_ca_system_score_codex":0.0004178026,"about_ca_system_score_gemma":0.00082412787,"threshold_uncertainty_score":0.0069230795},"labels":[],"label_agreement":null},{"id":"W2508318076","doi":"10.1186/s12866-016-0792-6","title":"Comparative transcriptome analysis by RNAseq of necrotic enteritis Clostridium perfringens during in vivo colonization and in vitro conditions","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Agriculture and Agri-Food Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Poultry Research Council","keywords":"Biology; Clostridium perfringens; Transcriptome; Colonization; In vivo; Microbiology; Enteritis; Parasitology; Clostridium Infections; Clostridium difficile; Gene expression; Genetics; Gene; Bacteria; Antibiotics; Zoology","score_opus":0.019093119478030048,"score_gpt":0.2875986926023781,"score_spread":0.26850557312434803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2508318076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97717243,0.001530988,0.011215683,0.000085956315,0.000056255252,0.000080931044,0.008215302,0.00012274804,0.0015197141],"genre_scores_gemma":[0.94387424,0.0024049308,0.026816895,0.00023703274,0.000053970372,0.0005276482,0.021851193,0.00016642653,0.0040675444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99978095,0.000023536606,0.000011271705,0.00008099483,0.000059266295,0.00004398177],"domain_scores_gemma":[0.99980146,0.000059892012,0.000043669334,0.000016565213,0.000054762542,0.000023730472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027357845,0.00050858175,0.0005494999,0.0004893237,0.0004095862,0.00049761863,0.00015699568,0.0002940163,0.0006961308],"category_scores_gemma":[0.0002357017,0.00017219498,0.0004404362,0.0006793701,0.0003485446,0.00023307696,0.0002831214,0.0005204029,0.00031455132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007485857,0.000010346272,0.00040966592,0.000045002587,0.00000559203,0.000015647052,0.00004527128,0.00004861241,0.9986539,0.000012886831,0.000019619323,0.00065854343],"study_design_scores_gemma":[0.00002069108,0.0010319715,0.13027209,0.000039395865,0.00017338943,0.0005145813,0.0006366981,0.003880766,0.85782945,0.00019005891,0.0053680106,0.000042812935],"about_ca_topic_score_codex":0.0007451177,"about_ca_topic_score_gemma":0.0010750035,"teacher_disagreement_score":0.0007451177,"about_ca_system_score_codex":0.00024230561,"about_ca_system_score_gemma":0.00029004138,"threshold_uncertainty_score":0.0023287535},"labels":[],"label_agreement":null},{"id":"W2512364037","doi":"10.1186/s12866-016-0815-3","title":"A method for assessing efficiency of bacterial cell disruption and DNA release","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Outotec (Canada)","funders":"Mitacs; DNA Genotek","keywords":"Biology; Lysis; Bacillus subtilis; DNA; DNA extraction; Chromatography; Bacteria; Microorganism; Extraction (chemistry); Biochemistry; Microbiology; Chemistry; Polymerase chain reaction; Genetics","score_opus":0.015583934812044325,"score_gpt":0.299069126116119,"score_spread":0.2834851913040747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2512364037","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.056542385,0.0074305674,0.9219028,0.0003136007,0.00063919165,0.0017903269,0.0022317898,0.002559189,0.006590118],"genre_scores_gemma":[0.12151395,0.006773253,0.85276264,0.0004053922,0.00012721632,0.0048285457,0.003421988,0.0005126778,0.009654361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98748696,0.002751181,0.0013423495,0.001956807,0.0061423425,0.00032035605],"domain_scores_gemma":[0.9904359,0.003912422,0.0016907457,0.0013988859,0.0022665183,0.00029539832],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005016233,0.002531238,0.0010670318,0.0048367144,0.0009782098,0.0011462533,0.0016499009,0.0023089303,0.0033438348],"category_scores_gemma":[0.0063302084,0.000991436,0.0013244868,0.0031391182,0.0015254783,0.0011951705,0.0013089018,0.002692353,0.0036734215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014284586,0.00015667526,0.0014408826,0.0006354298,0.00007243026,0.0000665178,0.00014133968,0.00030759483,0.9702359,0.00056659285,0.00046183492,0.025772016],"study_design_scores_gemma":[0.000019998515,0.00049603125,0.0035976723,0.000115061135,0.0000879231,0.00031758795,0.000046279267,0.0020151958,0.98692596,0.00025456707,0.0060720793,0.0000516852],"about_ca_topic_score_codex":0.00082809647,"about_ca_topic_score_gemma":0.0011890829,"teacher_disagreement_score":0.005016233,"about_ca_system_score_codex":0.00088828814,"about_ca_system_score_gemma":0.0011173562,"threshold_uncertainty_score":0.026528716},"labels":[],"label_agreement":null},{"id":"W2534393566","doi":"10.1186/s12866-016-0860-y","title":"Isolation, identification and characterization of Paenibacillus polymyxa CR1 with potentials for biopesticide, biofertilization, biomass degradation and biofuel production","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Western University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Paenibacillus polymyxa; Biology; Trichoderma harzianum; Surfactin; Rhizoctonia solani; Paenibacillus; Biofertilizer; Microbial inoculant; Botany; Rhizobacteria; Horticulture; Bacteria; Bacillus subtilis; Rhizosphere; Biological pest control; Inoculation","score_opus":0.017613396915585788,"score_gpt":0.2117433644938,"score_spread":0.1941299675782142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2534393566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99097204,0.0012132595,0.0041450006,0.00028069675,0.00002069044,0.00015354488,0.0018564207,0.00006440227,0.0012940627],"genre_scores_gemma":[0.9741589,0.0010233197,0.013392378,0.00010596692,0.000024077995,0.00012391766,0.0082087405,0.00004616025,0.0029166013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979776,0.00001746418,0.000022347253,0.000044097636,0.000071314855,0.000047045574],"domain_scores_gemma":[0.9997181,0.00004385274,0.00007991163,0.000030387175,0.00008149731,0.000046093566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019371104,0.00073287304,0.0003267266,0.000434312,0.00017228122,0.0004402788,0.00032120742,0.00038127828,0.000629449],"category_scores_gemma":[0.00042661233,0.00014558702,0.0004500999,0.0005551229,0.00014621265,0.0002909914,0.00039773824,0.0007067318,0.00048443957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005016061,0.00006301229,0.0010545712,0.00004959447,0.0000056698786,0.00006172326,0.000019134619,0.00005952046,0.9952254,0.000014287731,0.00004077624,0.0033560693],"study_design_scores_gemma":[0.000026273852,0.0006833213,0.042651884,0.000026560803,0.000072185016,0.0013547115,0.0001346653,0.00091787835,0.9503885,0.000046355082,0.0036857147,0.000011945673],"about_ca_topic_score_codex":0.0036434017,"about_ca_topic_score_gemma":0.0022118746,"teacher_disagreement_score":0.0036434017,"about_ca_system_score_codex":0.0003100265,"about_ca_system_score_gemma":0.00038125613,"threshold_uncertainty_score":0.0072443485},"labels":[],"label_agreement":null},{"id":"W2535264497","doi":"10.1186/s12866-016-0867-4","title":"Fucosyllactose and L-fucose utilization of infant Bifidobacterium longum and Bifidobacterium kashiwanohense","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"SCIEX","keywords":"Bifidobacterium longum; Fucose; Bifidobacterium bifidum; Biology; Bifidobacterium; Microbiology; Lactose; Glycan; Bifidobacterium breve; Galactose; Biochemistry; Lactobacillus; Fermentation","score_opus":0.027851113703657372,"score_gpt":0.2747720134629441,"score_spread":0.24692089975928674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2535264497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982121,0.0006398119,0.00024447832,0.000031080806,0.0000060414923,0.00001743048,0.00040033695,0.000008717356,0.00043989863],"genre_scores_gemma":[0.99401075,0.00069340033,0.0021858644,0.000043171694,0.00000770731,0.00004806134,0.0022637346,0.00000781147,0.00073937594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997532,0.000028674669,0.00003358232,0.000046884117,0.000068393885,0.000069227484],"domain_scores_gemma":[0.9998547,0.00002086213,0.000034123674,0.000012677691,0.000051762854,0.000025957943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018829982,0.00056444923,0.00040516938,0.00041042184,0.00024935137,0.00042300622,0.00025805045,0.0003317859,0.00041706322],"category_scores_gemma":[0.00031858005,0.00015737773,0.00036788406,0.00061565754,0.00013794056,0.00029939902,0.00048091638,0.00031064812,0.00021960428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034763102,0.000099075405,0.010014419,0.000137923,0.00002290126,0.00021409658,0.00019022686,0.000114009104,0.9846768,0.000036093257,0.000047528105,0.0040992154],"study_design_scores_gemma":[0.000042451797,0.0020603486,0.38600212,0.000067136,0.00021920366,0.0016536763,0.0015976246,0.0023844787,0.60229826,0.00012869223,0.0035026143,0.00004344297],"about_ca_topic_score_codex":0.0045165303,"about_ca_topic_score_gemma":0.0035185267,"teacher_disagreement_score":0.0045165303,"about_ca_system_score_codex":0.00021422186,"about_ca_system_score_gemma":0.0003850534,"threshold_uncertainty_score":0.008980513},"labels":[],"label_agreement":null},{"id":"W2552324663","doi":"10.1186/s12866-016-0892-3","title":"Illumina sequencing-based community analysis of bacteria associated with different bryophytes collected from Tibet, China","year":2016,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bryophyte Studies and Records","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia; National Natural Science Foundation of China; Capital Normal University","keywords":"Biology; Acidobacteria; Gemmatimonadetes; Proteobacteria; Planctomycetes; Bacteroidetes; Actinobacteria; Botany; Verrucomicrobia; Chloroflexi (class); Firmicutes; Alphaproteobacteria; Bryophyte; Bacteria; Ecology; 16S ribosomal RNA","score_opus":0.01810354184445748,"score_gpt":0.19230307874839841,"score_spread":0.17419953690394094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2552324663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99619114,0.0002760202,0.0010824524,0.000021847545,0.000008149394,0.000032547345,0.0019639733,0.000013208976,0.00041051925],"genre_scores_gemma":[0.9836668,0.00036811008,0.0040014586,0.000102882696,0.000019038247,0.0000991063,0.010074777,0.0000148371855,0.0016530758],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996927,0.000031644835,0.000028892748,0.00009801473,0.00009854954,0.00005029023],"domain_scores_gemma":[0.9997297,0.000020360345,0.00006538802,0.000009739586,0.000107828935,0.00006691982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043714853,0.00052872073,0.00045444953,0.0016979171,0.0010129658,0.000400072,0.00027696873,0.0003749459,0.00080559676],"category_scores_gemma":[0.00024874942,0.0002015471,0.00046135162,0.0018730093,0.00028867167,0.00019814527,0.00044174932,0.00025695475,0.00016852382],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004896354,0.00013288268,0.3922663,0.00058903405,0.00019464522,0.000534768,0.0016157399,0.00058675505,0.5818662,0.000102262,0.0004022081,0.021219509],"study_design_scores_gemma":[0.000017613744,0.0002131244,0.9879885,0.00002629388,0.00006965002,0.0002906649,0.00068597443,0.0010324512,0.008040128,0.00003292762,0.0015852242,0.000017623],"about_ca_topic_score_codex":0.013892963,"about_ca_topic_score_gemma":0.021999918,"teacher_disagreement_score":0.013892963,"about_ca_system_score_codex":0.0004269925,"about_ca_system_score_gemma":0.0006375378,"threshold_uncertainty_score":0.02762419},"labels":[],"label_agreement":null},{"id":"W2571068686","doi":"10.1186/s12866-016-0915-0","title":"The fecal presence of enterotoxin and F4 genes as an indicator of efficacy of treatment with colistin sulfate in pigs","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Natural Sciences and Engineering Research Council","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Colistin; Parasitology; Feces; Enterotoxin; Microbiology; Medical microbiology; Gene; Escherichia coli; Zoology; Antibiotics; Genetics","score_opus":0.01323817419702934,"score_gpt":0.2766020658957858,"score_spread":0.26336389169875646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2571068686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995752,0.000111784284,0.00010836974,0.000015377325,0.000006078751,0.0000111959625,0.000042174295,0.0000042755896,0.00012558875],"genre_scores_gemma":[0.99794966,0.00021578126,0.00051228626,0.000049044,0.000012452397,0.000033121752,0.0001989617,0.0000040674477,0.0010245183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99958867,0.000109345296,0.00004135077,0.00007831956,0.000089868074,0.000092446644],"domain_scores_gemma":[0.999474,0.00012789853,0.00019560667,0.00003229159,0.00005746714,0.00011279549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004976817,0.0003976822,0.00046943853,0.00036722198,0.00013946269,0.00024997836,0.00016529241,0.00069881784,0.0006969692],"category_scores_gemma":[0.0004300864,0.0002251751,0.00031406587,0.00014428876,0.00037167498,0.00032463574,0.00017605536,0.00056587026,0.00015793425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036018738,0.00072883785,0.018182207,0.00007493387,0.000024057143,0.00016757242,0.000080538346,0.000113266186,0.972661,0.000011343897,0.00003195124,0.0043223496],"study_design_scores_gemma":[0.00020981277,0.10038218,0.31198978,0.0000294553,0.00014570737,0.0007444342,0.0003487491,0.0008298988,0.58396924,0.000035317855,0.0012798118,0.000035594516],"about_ca_topic_score_codex":0.00040582402,"about_ca_topic_score_gemma":0.00052014476,"teacher_disagreement_score":0.00069881784,"about_ca_system_score_codex":0.00019409134,"about_ca_system_score_gemma":0.00019969276,"threshold_uncertainty_score":0.002632022},"labels":[],"label_agreement":null},{"id":"W2578475518","doi":"10.1186/s12866-017-0927-4","title":"Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre","funders":"Manchester Biomedical Research Centre; Versus Arthritis; Arthritis Research UK; National Institute for Health and Care Research","keywords":"Biology; Microbiome; Hypervariable region; Primer (cosmetics); 16S ribosomal RNA; Genetics; Computational biology; Ribosomal RNA; DNA sequencing; Pyrosequencing; Metagenomics; Human microbiome; Gene; Polymerase chain reaction","score_opus":0.08583443561109518,"score_gpt":0.3942337887795066,"score_spread":0.30839935316841144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2578475518","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17516483,0.0067577967,0.79547834,0.00078704365,0.00080564956,0.006528058,0.006680582,0.0042346558,0.0035630262],"genre_scores_gemma":[0.056438893,0.0015775603,0.9285235,0.0006333812,0.00007725071,0.00511931,0.0048402925,0.0010042365,0.0017855901],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9694575,0.012332099,0.0031690137,0.006097683,0.0076408414,0.0013028814],"domain_scores_gemma":[0.9893026,0.004707587,0.0011417073,0.0009719257,0.0035696258,0.00030662667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.021974899,0.0031737655,0.0028236248,0.0021361571,0.001089705,0.002459297,0.0023201571,0.002036395,0.0037135207],"category_scores_gemma":[0.023460576,0.0021919736,0.0022312677,0.002175341,0.0013113087,0.0012263422,0.0016699662,0.0021988803,0.0043767206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013638934,0.0003429203,0.0048673893,0.0027224314,0.0004079961,0.00023133517,0.000758134,0.004416796,0.94481754,0.00068360736,0.0015870583,0.037800953],"study_design_scores_gemma":[0.00011221333,0.0016736073,0.012843697,0.00032574523,0.0004927808,0.0006206342,0.00031125158,0.018900609,0.93683577,0.00089096825,0.026694078,0.00029864226],"about_ca_topic_score_codex":0.0016713947,"about_ca_topic_score_gemma":0.0043724966,"teacher_disagreement_score":0.021974899,"about_ca_system_score_codex":0.0010566496,"about_ca_system_score_gemma":0.0027594182,"threshold_uncertainty_score":0.116215825},"labels":[],"label_agreement":null},{"id":"W2586405756","doi":"10.1186/s12866-017-0943-4","title":"Conjugative type IVb pilus recognizes lipopolysaccharide of recipient cells to initiate PAPI-1 pathogenicity island transfer in Pseudomonas aeruginosa","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; European Commission; Cystic Fibrosis Canada","keywords":"Pilus; Pilin; Biology; Pseudomonas aeruginosa; Microbiology; Virulence; Mutant; Pathogenicity island; Biofilm; Bacterial outer membrane; Bacteria; Escherichia coli; Gene; Genetics","score_opus":0.02160664222156919,"score_gpt":0.2584165321974095,"score_spread":0.23680988997584032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586405756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959572,0.00014520527,0.0030310906,0.000053663378,0.000017461918,0.00004218853,0.00008969449,0.000043221222,0.0006203791],"genre_scores_gemma":[0.9950728,0.000096333504,0.0028955543,0.000033178658,0.0000085793345,0.000055483837,0.00035328534,0.00003103872,0.0014538083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994941,0.00009118478,0.000034851993,0.0000753234,0.00019965194,0.000104749655],"domain_scores_gemma":[0.9996008,0.00011095721,0.000082494465,0.00007907673,0.000043901317,0.000082889805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039786586,0.00057137257,0.00034749586,0.00027233994,0.00016443597,0.0003578736,0.00031993995,0.00043328563,0.001988234],"category_scores_gemma":[0.0004052024,0.00013263254,0.00027847427,0.00017997841,0.00020352048,0.00025813363,0.00057427224,0.0009057852,0.0007531367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025570542,0.000039653372,0.00019150438,0.000010805443,0.0000021795154,0.00002041465,0.000010518287,0.000008830514,0.9993303,0.000032799613,0.0000058855335,0.0003216483],"study_design_scores_gemma":[0.000008973862,0.00036791258,0.004396602,0.0000031846296,0.0000098094615,0.00021957951,0.00002896464,0.0006184739,0.99395543,0.000027441405,0.0003603577,0.0000032493242],"about_ca_topic_score_codex":0.00034581058,"about_ca_topic_score_gemma":0.00024109712,"teacher_disagreement_score":0.001988234,"about_ca_system_score_codex":0.00033213975,"about_ca_system_score_gemma":0.00023044739,"threshold_uncertainty_score":0.0066512823},"labels":[],"label_agreement":null},{"id":"W2594718762","doi":"10.1186/s12866-017-0947-0","title":"Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Silage; Food spoilage; Microbiome; Triticale; Forage; Fermentation; Weissella; Metagenomics; Food science; Agronomy; Animal science; Leuconostoc; Lactobacillus; Bacteria; Biochemistry","score_opus":0.03343106449824844,"score_gpt":0.217885958733743,"score_spread":0.18445489423549455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594718762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99923825,0.00014102337,0.00015828745,0.000004666426,0.0000024973194,0.000009677151,0.00030471684,0.000003378087,0.0001374761],"genre_scores_gemma":[0.9974668,0.00018386504,0.0006737688,0.000023545475,0.00000496065,0.00002915703,0.0011241594,0.000005082092,0.0004886823],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985826,0.000011053195,0.000010342552,0.000047443886,0.00003447675,0.000038351747],"domain_scores_gemma":[0.9997291,0.000025047935,0.00011381962,0.000008508261,0.000055799046,0.000067715395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020203946,0.00039762454,0.00039090335,0.00048024527,0.00031571492,0.00065667595,0.00010773166,0.00023550265,0.00062134874],"category_scores_gemma":[0.00019902215,0.00015644531,0.00032883967,0.0004562024,0.00027683907,0.00033890767,0.00037786207,0.0003491021,0.00013022713],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009529572,0.000070627066,0.059616815,0.00011109713,0.000046594992,0.000120486045,0.00040156156,0.00012216759,0.9357585,0.000023206878,0.00004919291,0.0027266864],"study_design_scores_gemma":[0.0000065461413,0.0006792731,0.9583117,0.000019751524,0.000050480543,0.00015380587,0.0006859463,0.00048310432,0.039087486,0.000038660914,0.00046945267,0.0000138535825],"about_ca_topic_score_codex":0.0020858601,"about_ca_topic_score_gemma":0.003444632,"teacher_disagreement_score":0.0020858601,"about_ca_system_score_codex":0.00027885844,"about_ca_system_score_gemma":0.00025670842,"threshold_uncertainty_score":0.00414747},"labels":[],"label_agreement":null},{"id":"W2594929889","doi":"10.1186/s12866-017-0962-1","title":"Comparative genomics of Enterococcus spp. isolated from bovine feces","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Agriculture and Agri-Food Canada","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Government of Canada","keywords":"Enterococcus hirae; Enterococcus faecium; Biology; Enterococcus; Enterococcus faecalis; Microbiology; Antibiotic resistance; Antibiotics; Bacteria; Genetics; Staphylococcus aureus","score_opus":0.0380680680278237,"score_gpt":0.3099876551407595,"score_spread":0.2719195871129358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594929889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930883,0.0012464985,0.0012952646,0.00005283645,0.000014137819,0.00002657156,0.0027666863,0.000023314526,0.0014864668],"genre_scores_gemma":[0.98155767,0.0007692649,0.0039906045,0.00013233416,0.00001599492,0.000036812617,0.011692892,0.00003429854,0.0017700214],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997818,0.000019888901,0.00001462934,0.00006884944,0.000052504718,0.00006228588],"domain_scores_gemma":[0.9996934,0.000060814968,0.00009065958,0.000014857101,0.00008415661,0.00005616205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001416305,0.00039696193,0.00035156592,0.00083345425,0.00026687325,0.0004891411,0.00019180037,0.0003239747,0.0009498613],"category_scores_gemma":[0.00032569873,0.00012217925,0.0003512974,0.0010021366,0.00018885614,0.00013239613,0.00030493469,0.00036218535,0.00040384787],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026631734,0.000043363474,0.0059184567,0.000114608745,0.000018594545,0.00017898704,0.00020069335,0.00005067137,0.9904157,0.000026692413,0.000052285934,0.0027136311],"study_design_scores_gemma":[0.000020957968,0.0010864632,0.7885882,0.00007414856,0.00019012377,0.0031306068,0.0012183062,0.0009598544,0.19595279,0.00009558483,0.008660392,0.000022538505],"about_ca_topic_score_codex":0.0033837205,"about_ca_topic_score_gemma":0.0033807084,"teacher_disagreement_score":0.0033837205,"about_ca_system_score_codex":0.00030986042,"about_ca_system_score_gemma":0.0002020535,"threshold_uncertainty_score":0.006728053},"labels":[],"label_agreement":null},{"id":"W2598319765","doi":"10.1186/s12866-017-0978-6","title":"The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"Beef Cattle Research Council; Alberta Livestock and Meat Agency","keywords":"Feedlot; Bovine respiratory disease; Biology; Beef cattle; Pasteurella multocida; Herd; Mycoplasma; Pasteurella; Microbiology; Animal science; Bacteria","score_opus":0.013571984672554287,"score_gpt":0.27435797624343977,"score_spread":0.2607859915708855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2598319765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996716,0.000075276585,0.00004152318,0.0000058526334,0.0000033630938,0.0000044913945,0.0001037142,9.747173e-7,0.00009315705],"genre_scores_gemma":[0.99838936,0.0001529377,0.00025051172,0.000039797877,0.000009791584,0.000015016833,0.00057375163,0.000002429891,0.0005663679],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968827,0.000038909016,0.000012624454,0.00008128189,0.0000791308,0.00009974805],"domain_scores_gemma":[0.9995757,0.00004816564,0.000101888894,0.00001148421,0.00012475655,0.00013802812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003460264,0.00036262654,0.0006153466,0.0005568272,0.000754286,0.0011765839,0.00023259033,0.0005347642,0.0008237934],"category_scores_gemma":[0.0005208947,0.00026354418,0.00028514906,0.0004906728,0.00053004175,0.00036298297,0.0004137758,0.00046459795,0.00020121702],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032491137,0.00040375968,0.74886507,0.000121966965,0.000091653674,0.0005065153,0.0035869647,0.00015371514,0.23489138,0.000029451421,0.00013297648,0.007967388],"study_design_scores_gemma":[0.0000054389157,0.0009147282,0.99394673,0.000012854108,0.000037627146,0.00011406134,0.0017589994,0.000120419034,0.002849439,0.000008977293,0.00022352581,0.0000072734665],"about_ca_topic_score_codex":0.01612973,"about_ca_topic_score_gemma":0.025791902,"teacher_disagreement_score":0.01612973,"about_ca_system_score_codex":0.0009645853,"about_ca_system_score_gemma":0.00047598107,"threshold_uncertainty_score":0.03207171},"labels":[],"label_agreement":null},{"id":"W2605881717","doi":"10.1186/s12866-017-1007-5","title":"Erratum to: The nasopharyngeal microbiota of beef cattle before and after transport to a feedlot","year":2017,"lang":"en","type":"erratum","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"","keywords":"Feedlot; Biology; Beef cattle; Parasitology; Animal science; Veterinary medicine; Zoology; Medicine","score_opus":0.01335517709431014,"score_gpt":0.22595959289850168,"score_spread":0.21260441580419154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605881717","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014851049,0.002607186,0.00034989012,0.030096333,0.96193755,0.000026752927,0.0013581082,0.00011903242,0.002020126],"genre_scores_gemma":[0.04551222,0.03928421,0.009731483,0.13386819,0.40995854,0.00037816196,0.012729545,0.0015392434,0.34699833],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99803776,0.00019985255,0.0005034428,0.00024116272,0.0008000295,0.00021782893],"domain_scores_gemma":[0.99181455,0.0022735216,0.00077424047,0.0004012897,0.004180928,0.00055545644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001803636,0.0024016371,0.0017715936,0.0027488975,0.0023998716,0.0018099559,0.0017366168,0.005674502,0.026763096],"category_scores_gemma":[0.014074223,0.0009995331,0.0012792783,0.001640041,0.0013843621,0.0012694575,0.0012546852,0.0045100283,0.017984187],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003381311,0.00006790845,0.0007729973,0.0005042258,0.000036962258,0.0017898688,0.00008983256,0.00008249279,0.0005007239,0.0003122764,0.97845274,0.017051844],"study_design_scores_gemma":[0.00010463628,0.00027382505,0.008736867,0.0010468604,0.00019384926,0.002638883,0.0007477936,0.00024919858,0.0019509196,0.00065955747,0.9833028,0.000094807176],"about_ca_topic_score_codex":0.01379602,"about_ca_topic_score_gemma":0.01773384,"teacher_disagreement_score":0.026763096,"about_ca_system_score_codex":0.0023145513,"about_ca_system_score_gemma":0.0038285116,"threshold_uncertainty_score":0.08953154},"labels":[],"label_agreement":null},{"id":"W2615512291","doi":"10.1186/s12866-017-1023-5","title":"Identification and quantification of virulence factors of enterotoxigenic Escherichia coli by high-resolution melting curve quantitative PCR","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council; Alberta Livestock and Meat Agency","keywords":"Amplicon; Enterotoxigenic Escherichia coli; Fimbria; Biology; Virulence; Melting curve analysis; Microbiology; Diarrhea; High Resolution Melt; Escherichia coli; Multiplex polymerase chain reaction; Feces; Multiplex; Real-time polymerase chain reaction; Polymerase chain reaction; Enterotoxin; Gene; Genetics","score_opus":0.032701603655760844,"score_gpt":0.3121596555496484,"score_spread":0.27945805189388756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2615512291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49807075,0.0036584185,0.49241558,0.00012239031,0.00009777675,0.00071569014,0.0015728526,0.0013809322,0.0019656543],"genre_scores_gemma":[0.52520305,0.002325331,0.46287704,0.00018364945,0.000057527337,0.0017839078,0.002476217,0.0001815625,0.0049117925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967513,0.0007103064,0.00030288807,0.0010040558,0.0010106504,0.0002208253],"domain_scores_gemma":[0.99818367,0.0006686456,0.00047220822,0.00018924227,0.00043793992,0.000048385744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025769535,0.00111483,0.0008725072,0.001542078,0.00023207442,0.0008180942,0.0007768439,0.0009846048,0.00088755967],"category_scores_gemma":[0.002485696,0.0006506354,0.00086326804,0.0009542975,0.000530184,0.0006495534,0.0005128867,0.0011221525,0.00079383043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006022429,0.00006916441,0.0012234822,0.00010064714,0.000019439647,0.000017503417,0.000060747883,0.00047489782,0.99126947,0.000071410155,0.000037970887,0.006594942],"study_design_scores_gemma":[0.000009912448,0.00042601107,0.008625594,0.000039089282,0.00006432783,0.00023673523,0.000057520905,0.0139284525,0.97449195,0.00014532976,0.0019307049,0.00004437023],"about_ca_topic_score_codex":0.00028860755,"about_ca_topic_score_gemma":0.00057100184,"teacher_disagreement_score":0.0025769535,"about_ca_system_score_codex":0.00038624747,"about_ca_system_score_gemma":0.00027106545,"threshold_uncertainty_score":0.013628364},"labels":[],"label_agreement":null},{"id":"W2747447694","doi":"10.1186/s12866-017-1093-4","title":"Evaluation of trypan blue stain in a haemocytometer for rapid detection of cerebrospinal fluid sterility in HIV patients with cryptococcal meningitis","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; Medical Research Council; Fogarty International Center; National Institutes of Health; Grand Challenges Canada","keywords":"Hemocytometer; Meningitis; Biology; Cryptococcus; Cerebrospinal fluid; Staining; Cryptococcus neoformans; Trypan blue; Sterility; Immunology; Microbiology; Medicine; Surgery; In vitro; Botany","score_opus":0.04691773262857485,"score_gpt":0.31771988840881765,"score_spread":0.2708021557802428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2747447694","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817492,0.008544328,0.005929977,0.00024523193,0.00021007289,0.0003580498,0.0004247632,0.00010126445,0.0024372463],"genre_scores_gemma":[0.9814503,0.0017170559,0.015507109,0.00017409059,0.00004465689,0.00019706777,0.0003575791,0.00001856883,0.00053345534],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9952366,0.0021417984,0.000780268,0.00032463903,0.0012355255,0.00028123555],"domain_scores_gemma":[0.99628097,0.0014477405,0.00087944994,0.00016576934,0.0009972062,0.0002288898],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036543545,0.0006212628,0.0010392537,0.002562747,0.0007219613,0.0016928191,0.0007167274,0.0007081763,0.000983417],"category_scores_gemma":[0.008370315,0.00050270744,0.00046487947,0.0016912838,0.0008420801,0.00069790636,0.00079627224,0.0006669864,0.00051489356],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033302251,0.00054741616,0.85896045,0.0009748237,0.00027679835,0.0027971724,0.0025128762,0.0005195075,0.096978664,0.00037269763,0.0013917214,0.031337574],"study_design_scores_gemma":[0.00028468363,0.009855927,0.8415804,0.000831772,0.000517254,0.01262433,0.0042462465,0.015427773,0.106327854,0.0006348078,0.0074713416,0.00019770056],"about_ca_topic_score_codex":0.002177508,"about_ca_topic_score_gemma":0.0034216633,"teacher_disagreement_score":0.0036543545,"about_ca_system_score_codex":0.00053220545,"about_ca_system_score_gemma":0.0005178003,"threshold_uncertainty_score":0.01932633},"labels":[],"label_agreement":null},{"id":"W2750025813","doi":"10.1186/s12866-017-1092-5","title":"Upper and lower respiratory tract microbiota in horses: bacterial communities associated with health and mild asthma (inflammatory airway disease) and effects of dexamethasone","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Veterinary Equine Medical Research","field":"Veterinary","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"University of Calgary","keywords":"Biology; Respiratory tract; Firmicutes; Respiratory system; Respiratory tract infections; Immunology; Microbiology; Bacteroidetes; Internal medicine; Medicine; Bacteria","score_opus":0.05629280460043278,"score_gpt":0.3362562492118927,"score_spread":0.2799634446114599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2750025813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967417,0.0023455338,0.00015958276,0.000097301985,0.00001648858,0.000031138192,0.00029249964,0.0000057996454,0.00030992655],"genre_scores_gemma":[0.9975299,0.0008694935,0.00066251936,0.00014489796,0.00002297802,0.00003617564,0.0003396788,0.000003450546,0.0003908456],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994393,0.0001258868,0.000058777085,0.00013093914,0.00014535707,0.00009971617],"domain_scores_gemma":[0.9995303,0.00008478761,0.00018330496,0.000017733813,0.00007707714,0.00010686477],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004147583,0.00032792924,0.0005964709,0.00049148145,0.00029384813,0.00064081885,0.00014976056,0.0005893818,0.0010863806],"category_scores_gemma":[0.00065492187,0.00013894621,0.0003921281,0.0003454417,0.0004843403,0.00032845742,0.00033889688,0.00044397623,0.00016398738],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036400377,0.00033343374,0.18855068,0.00086117955,0.0001545239,0.00041346706,0.00062903925,0.00023576985,0.7774725,0.000049441966,0.00020220637,0.027457645],"study_design_scores_gemma":[0.000027738317,0.0030948832,0.95249474,0.00012741603,0.00016580983,0.00077557063,0.0010491334,0.00039331245,0.03993319,0.000074816075,0.0018350334,0.000028327193],"about_ca_topic_score_codex":0.0019328126,"about_ca_topic_score_gemma":0.0031721625,"teacher_disagreement_score":0.0019328126,"about_ca_system_score_codex":0.00033880578,"about_ca_system_score_gemma":0.00031113275,"threshold_uncertainty_score":0.0038431287},"labels":[],"label_agreement":null},{"id":"W2758768382","doi":"10.1186/s12866-017-1111-6","title":"Temporal dynamics in microbial soil communities at anthrax carcass sites","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Office of International Science and Engineering; Norges Forskningsråd; Universitetet i Oslo; Ministry of Environment; National Science Foundation","keywords":"Biology; Bacillus anthracis; Spore; Metagenomics; Ecology; Cereus; Endospore; Microbial ecology; Abundance (ecology); Bacteria; Botany; Bacillus cereus; Genetics","score_opus":0.028289690016520697,"score_gpt":0.2833500663283346,"score_spread":0.2550603763118139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2758768382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984577,0.0001395104,0.00023059975,0.000014689123,0.000002486342,0.000009408446,0.00079549826,0.0000063792313,0.0003437811],"genre_scores_gemma":[0.99807274,0.00008744943,0.00055078993,0.000012124124,0.0000051998663,0.000022701946,0.0009346768,0.0000029871485,0.00031120612],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99985254,0.00001465607,0.0000073925526,0.000058057718,0.000031761832,0.000035573397],"domain_scores_gemma":[0.99969554,0.00002850822,0.000099899094,0.00000757229,0.00011367977,0.000054842454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001886355,0.00022094631,0.00021040907,0.0005900211,0.00039934367,0.00053453515,0.00019129463,0.0002677898,0.0011311172],"category_scores_gemma":[0.00027341966,0.000104342005,0.00013435709,0.0006027917,0.00020059063,0.00029838659,0.00036675332,0.00024245975,0.00022017452],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005001803,0.00010730497,0.7925269,0.00021509238,0.00007207242,0.00041629674,0.0017220563,0.00033985008,0.19412415,0.00007807981,0.0002172011,0.009680865],"study_design_scores_gemma":[0.0000021286319,0.000074025214,0.9944412,0.000009962156,0.000012230171,0.000094129435,0.0008598864,0.00037696827,0.003533584,0.000019711471,0.0005700941,0.0000059267777],"about_ca_topic_score_codex":0.0056499476,"about_ca_topic_score_gemma":0.012749982,"teacher_disagreement_score":0.0056499476,"about_ca_system_score_codex":0.00040974337,"about_ca_system_score_gemma":0.00018691974,"threshold_uncertainty_score":0.011234164},"labels":[],"label_agreement":null},{"id":"W2773830034","doi":"10.1186/s12866-017-1140-1","title":"The distinctive cell division interactome of Neisseria gonorrhoeae","year":2017,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"FtsZ; Interactome; Cell division; Biology; Neisseria gonorrhoeae; Cell biology; Cell; Genetics; Gene","score_opus":0.014530400435562708,"score_gpt":0.2622113943396707,"score_spread":0.24768099390410803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2773830034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99467826,0.0015507705,0.0013377154,0.00006163152,0.0000068732475,0.000016998769,0.00095688686,0.00003853982,0.001352176],"genre_scores_gemma":[0.98756474,0.001199998,0.005884495,0.000112532754,0.000014197423,0.000035002402,0.0035575626,0.000023611261,0.0016077744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998839,0.000009625067,0.000008802749,0.000034732275,0.00004086468,0.00002205466],"domain_scores_gemma":[0.9998505,0.000038225804,0.000041884934,0.000016693375,0.000024683377,0.00002805844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007255517,0.00036283644,0.00032341675,0.00076834345,0.00034189265,0.00033349713,0.000108981585,0.0002660032,0.0010546251],"category_scores_gemma":[0.00026887452,0.00014251148,0.00042233692,0.00048179063,0.0001353147,0.00025105343,0.00033497822,0.00022484193,0.00029342962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014109293,0.000016817736,0.008149222,0.00009754653,0.000022461565,0.0003242311,0.00010909649,0.000034230106,0.98745453,0.00008659039,0.00006734354,0.0034967256],"study_design_scores_gemma":[0.000021349992,0.0003609554,0.6347006,0.000052425425,0.00017792195,0.007500127,0.0005367739,0.0013490929,0.341141,0.00036489955,0.013751207,0.000043644166],"about_ca_topic_score_codex":0.0013064276,"about_ca_topic_score_gemma":0.002639002,"teacher_disagreement_score":0.0013064276,"about_ca_system_score_codex":0.00016616676,"about_ca_system_score_gemma":0.00018080021,"threshold_uncertainty_score":0.0035280585},"labels":[],"label_agreement":null},{"id":"W2884690521","doi":"10.1186/s12866-018-1211-y","title":"Bacterial DNA patterns identified using paired-end Illumina sequencing of 16S rRNA genes from whole blood samples of septic patients in the emergency room and intensive care unit","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Foothills Medical Centre; University of Calgary","funders":"Alberta Innovates; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Sepsis; Biology; Blood culture; DNA extraction; Intensive care unit; Whole blood; Microbiology; Streptococcus; Bacteria; Immunology; Polymerase chain reaction; Medicine; Gene; Internal medicine; Antibiotics; Genetics","score_opus":0.04482425950427814,"score_gpt":0.2693336596996436,"score_spread":0.22450940019536547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884690521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98530966,0.0005933631,0.00975549,0.00008144871,0.00003937663,0.00010679614,0.0028933769,0.000057752583,0.0011628615],"genre_scores_gemma":[0.9505992,0.00095099164,0.039753556,0.00029016263,0.000038403243,0.00020901785,0.006450768,0.000052872387,0.0016550937],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993748,0.00009106181,0.00008618813,0.00017229021,0.00021005874,0.000065661574],"domain_scores_gemma":[0.99952555,0.00008218845,0.00011212401,0.000025573027,0.00020834322,0.00004623793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033915674,0.0003933003,0.0003097659,0.00078809535,0.00031214437,0.0005400983,0.00022957695,0.00037091505,0.00095488905],"category_scores_gemma":[0.0008979517,0.00015762102,0.00039020268,0.0007568626,0.00026439133,0.00014919329,0.00038580975,0.00038353208,0.0006401153],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006098567,0.00013134487,0.07084875,0.00038238065,0.00008048715,0.0004940273,0.00083600066,0.00033908078,0.906358,0.00008222426,0.00031255046,0.019525338],"study_design_scores_gemma":[0.000029645762,0.001681742,0.4405939,0.00017106962,0.0002908175,0.003743511,0.001870302,0.004555142,0.5404081,0.00031335006,0.006277377,0.00006503004],"about_ca_topic_score_codex":0.0005330197,"about_ca_topic_score_gemma":0.00096542237,"teacher_disagreement_score":0.00095488905,"about_ca_system_score_codex":0.000107670654,"about_ca_system_score_gemma":0.00028443793,"threshold_uncertainty_score":0.0031944513},"labels":[],"label_agreement":null},{"id":"W2888849038","doi":"10.1186/s12866-018-1232-6","title":"Changes in gut microbiota and plasma inflammatory factors across the stages of colorectal tumorigenesis: a case-control study","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Changhai Hospital of Shanghai; Fudan University; National Natural Science Foundation of China","keywords":"Colorectal cancer; Biology; Gut flora; Adenoma; Microbiome; Malignancy; Internal medicine; Colorectal adenoma; Carcinogenesis; Gastroenterology; Carcinoma; Cancer; Inflammation; Pathology; Immunology; Medicine; Bioinformatics; Genetics","score_opus":0.01211183151434023,"score_gpt":0.2693180285321687,"score_spread":0.25720619701782843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888849038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868196,0.00052271795,0.00037593325,0.000017073004,0.000008150353,0.00007212744,0.000107425396,0.000004102255,0.00021058824],"genre_scores_gemma":[0.9991473,0.00013417646,0.00032931427,0.000023862318,0.00001504052,0.000053719,0.00015951775,0.0000021886196,0.00013498928],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988979,0.00024781405,0.00012974654,0.00041143768,0.00019251522,0.00012044779],"domain_scores_gemma":[0.9990683,0.00021234185,0.00024126282,0.00019982342,0.0001314166,0.00014692509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012659475,0.00063124613,0.00069027004,0.0010359772,0.0011494489,0.00065705384,0.00047271582,0.00076958694,0.0012414923],"category_scores_gemma":[0.0017353691,0.0007109071,0.00077046274,0.0010606701,0.00061408407,0.00040562017,0.00046151233,0.00051909254,0.00014321876],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007022213,0.00020075009,0.99499536,0.00005643494,0.0003339496,0.00045190597,0.00022880403,0.00003271163,0.0014163449,0.00004990198,0.000075097436,0.0014564857],"study_design_scores_gemma":[0.00008039083,0.0008788601,0.99624723,0.000012995462,0.00039980828,0.0012658645,0.00019686225,0.00024087566,0.00024209992,0.000038705042,0.0003865303,0.000009689511],"about_ca_topic_score_codex":0.0044047027,"about_ca_topic_score_gemma":0.004573406,"teacher_disagreement_score":0.0044047027,"about_ca_system_score_codex":0.00042330974,"about_ca_system_score_gemma":0.00036991743,"threshold_uncertainty_score":0.008758128},"labels":[],"label_agreement":null},{"id":"W2889083413","doi":"10.1186/s12866-018-1242-4","title":"A decay effect of the growth rate associated with genome reduction in Escherichia coli","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Exponential growth; Growth rate; Biology; Escherichia coli; Logistic function; Bacterial growth; Population; Genome; Biological system; Biophysics; Genetics; Statistics; Bacteria; Gene; Mathematics","score_opus":0.003976898265013248,"score_gpt":0.2089418852405939,"score_spread":0.20496498697558066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889083413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8158473,0.0020021864,0.1786528,0.0006299621,0.000070436065,0.00006224325,0.00030607532,0.00059580425,0.0018331973],"genre_scores_gemma":[0.98185194,0.000852408,0.01598003,0.00011678396,0.000011477624,0.000051867017,0.00022337158,0.00005747828,0.0008546326],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99908483,0.00018196687,0.00006628836,0.00023970015,0.00031178741,0.00011533308],"domain_scores_gemma":[0.99766374,0.0013240196,0.00036935898,0.00024152474,0.0003580848,0.000043264157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010234587,0.00051578705,0.0005568906,0.00049240334,0.00019621201,0.0005698275,0.0006611134,0.00075079355,0.0002874298],"category_scores_gemma":[0.0063016918,0.00028442545,0.0007134424,0.0004835798,0.0005032523,0.0005531507,0.0005166174,0.0012058751,0.00021550371],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064077607,0.00028419937,0.019529948,0.00050344015,0.000058944705,0.0006393182,0.00030075692,0.0524477,0.88138497,0.0042910594,0.0004754726,0.03944335],"study_design_scores_gemma":[0.000016975579,0.0005591587,0.021018468,0.00004097352,0.00006689512,0.0006926108,0.0001172229,0.5252863,0.44751602,0.0024934611,0.002077479,0.00011437298],"about_ca_topic_score_codex":0.0023119939,"about_ca_topic_score_gemma":0.0007200934,"teacher_disagreement_score":0.0023119939,"about_ca_system_score_codex":0.00074693636,"about_ca_system_score_gemma":0.00046027492,"threshold_uncertainty_score":0.005419433},"labels":[],"label_agreement":null},{"id":"W2900048179","doi":"10.1186/s12866-018-1324-3","title":"Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Plant Pathogen Control","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Key Research and Development Program of China; Earmarked Fund for Modern Agro-industry Technology Research System; Agriculture and Agri-Food Canada; Yangzhou University","keywords":"Biology; Conidiation; Alternaria solani; Alternaria brassicicola; Genome; Gene; Virulence; Genetics; Whole genome sequencing; Pathosystem; Genome project; Fungal protein; Blight; Botany; Arabidopsis; Peptide sequence; Mutant","score_opus":0.02908648346578459,"score_gpt":0.22889562626023877,"score_spread":0.19980914279445416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900048179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96769744,0.0025182422,0.005852557,0.00027654337,0.000066290835,0.00008420065,0.021820335,0.00031070644,0.0013736684],"genre_scores_gemma":[0.833541,0.0024366,0.023242567,0.00017633862,0.00004906053,0.000105466956,0.1380371,0.00015248747,0.002259357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994063,0.000004697417,0.0000063968205,0.000022642218,0.000016433307,0.000009084496],"domain_scores_gemma":[0.9998385,0.00002597238,0.000043664248,0.000014783649,0.000044693534,0.000032445696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009318423,0.0005393989,0.0003372131,0.0005569158,0.00024460192,0.00023596408,0.00018036993,0.00036309526,0.0011971587],"category_scores_gemma":[0.00021250507,0.00016077376,0.00050166796,0.00086684077,0.000106362415,0.00020691611,0.00019700162,0.0005657036,0.000749978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042875152,0.000072585564,0.007643914,0.0006168031,0.000043937413,0.00068058673,0.00015609912,0.00051110156,0.97693574,0.000118004886,0.0006618496,0.0121306535],"study_design_scores_gemma":[0.00042072713,0.0014085454,0.5882854,0.00038350667,0.00092059374,0.007461124,0.0012054798,0.014607174,0.30511022,0.0015806055,0.07847517,0.00014155997],"about_ca_topic_score_codex":0.0019562664,"about_ca_topic_score_gemma":0.0024410458,"teacher_disagreement_score":0.0019562664,"about_ca_system_score_codex":0.00024500504,"about_ca_system_score_gemma":0.0004705238,"threshold_uncertainty_score":0.0040048957},"labels":[],"label_agreement":null},{"id":"W2903928977","doi":"10.1186/s12866-018-1363-9","title":"Genomic characterization of Listeria monocytogenes isolates reveals that their persistence in a pig slaughterhouse is linked to the presence of benzalkonium chloride resistance genes","year":2018,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Université de Montréal; Cegep de Saint Hyacinthe","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Biology; Benzalkonium chloride; Prophage; Listeria monocytogenes; Microbiology; Efflux; Persistence (discontinuity); Genome; Typing; Gene; Multiplex polymerase chain reaction; Listeria; Pathogen; Polymerase chain reaction; Genetics; Bacteria; Escherichia coli; Bacteriophage","score_opus":0.07168349666498741,"score_gpt":0.28212038173213555,"score_spread":0.21043688506714814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903928977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990723,0.00008276029,0.00037013117,0.00001623072,0.0000016425794,0.000005102788,0.0002945049,0.0000073073984,0.0001499313],"genre_scores_gemma":[0.99737227,0.000081753155,0.0010146544,0.000040701547,0.000003159703,0.000013185233,0.0011887812,0.000007473858,0.00027792717],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997824,0.000015376803,0.000017906414,0.000076154574,0.000048357466,0.000059859463],"domain_scores_gemma":[0.9996195,0.000065078355,0.0001739174,0.00003067726,0.000055590197,0.000055266115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019153846,0.00019189401,0.00025683155,0.0004881765,0.00021470914,0.0004679046,0.00017168185,0.0003844002,0.00078127265],"category_scores_gemma":[0.00030753718,0.00015223074,0.00029950868,0.00050746143,0.00022645661,0.00015128755,0.000280114,0.00029183266,0.0002844195],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046769378,0.000100801895,0.15183981,0.00009993346,0.000041900075,0.00042158988,0.00041615404,0.00015631813,0.8390745,0.00003281597,0.00007390998,0.007274458],"study_design_scores_gemma":[0.000010609943,0.0005398057,0.9469049,0.00001659303,0.000066170636,0.0014707189,0.00042487175,0.00039658562,0.049343977,0.000042884665,0.00077219686,0.000010665873],"about_ca_topic_score_codex":0.0015402356,"about_ca_topic_score_gemma":0.0018290891,"teacher_disagreement_score":0.0015402356,"about_ca_system_score_codex":0.00019488632,"about_ca_system_score_gemma":0.00025159953,"threshold_uncertainty_score":0.0030625463},"labels":[],"label_agreement":null},{"id":"W2914207706","doi":"10.1186/s12866-018-1357-7","title":"Novel virulence, antibiotic resistance and toxin gene-specific PCR-based assays for rapid pathogenicity assessment of Arcobacter faecis and Arcobacter lanthieri","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; McMaster University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Virulence; Multiplex polymerase chain reaction; Arcobacter; Microbiology; Parasitology; Antibiotic resistance; Toxin; Cytolethal distending toxin; Gene; Pathogenicity island; Multiplex; Polymerase chain reaction; Antibiotics; Genetics","score_opus":0.029395921423787233,"score_gpt":0.2394061072423834,"score_spread":0.21001018581859615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914207706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83636343,0.0032767486,0.15549356,0.00027681087,0.00012209282,0.0007198899,0.0011824577,0.0008172815,0.0017476875],"genre_scores_gemma":[0.68916374,0.0013117155,0.30370802,0.00020550426,0.000059135462,0.0008929959,0.0018840567,0.000049663307,0.0027251844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965958,0.0008270357,0.00029600077,0.0008903983,0.001208088,0.00018264622],"domain_scores_gemma":[0.9979906,0.0005129761,0.00070162007,0.00014779755,0.00051490724,0.00013213383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018687972,0.0011296135,0.00061027874,0.0012314909,0.0002026694,0.0006506915,0.0008361178,0.00085957977,0.00079737016],"category_scores_gemma":[0.0022728269,0.00048694233,0.00052969373,0.00048306797,0.00046212427,0.00070062134,0.0006321441,0.0008292533,0.00064037094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018498665,0.00022218519,0.0076687816,0.00020320063,0.00002472086,0.00006039927,0.00011179398,0.00036476733,0.9727701,0.00007888015,0.000090610054,0.018219573],"study_design_scores_gemma":[0.000043521442,0.0020937934,0.028084489,0.000076393946,0.00016139765,0.0017346689,0.00026182437,0.011544233,0.9525652,0.00015262996,0.0032046738,0.00007725548],"about_ca_topic_score_codex":0.0004084847,"about_ca_topic_score_gemma":0.0009518539,"teacher_disagreement_score":0.0018687972,"about_ca_system_score_codex":0.00036973957,"about_ca_system_score_gemma":0.0004541672,"threshold_uncertainty_score":0.009883285},"labels":[],"label_agreement":null},{"id":"W2936220680","doi":"10.1186/s12866-018-1380-8","title":"Characterization and complete genome analysis of the surfactin-producing, plant-protecting bacterium Bacillus velezensis 9D-6","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Western University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Surfactin; Biology; Ralstonia solanacearum; Clavibacter michiganensis; Microbiology; Rhizoctonia solani; Pantoea agglomerans; Alternaria alternata; Fusarium oxysporum; Bacteria; Bacillus subtilis; Botany; Pathogen","score_opus":0.022316764654453952,"score_gpt":0.19594328893502766,"score_spread":0.1736265242805737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2936220680","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93329537,0.003153062,0.008560206,0.00027050666,0.00006362117,0.00028528154,0.051894147,0.00020566917,0.0022722501],"genre_scores_gemma":[0.74416155,0.0031053764,0.028237708,0.00020195366,0.000046676385,0.00037536144,0.21871752,0.00024221222,0.0049116435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971694,0.000021815473,0.000034598543,0.00009405147,0.000091186244,0.000041404932],"domain_scores_gemma":[0.9996612,0.000051478946,0.00009610465,0.00003659376,0.00008390251,0.000070834685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024914485,0.00092168426,0.0008607305,0.0010277339,0.00031195726,0.0006279716,0.00046442595,0.00047336562,0.0007927404],"category_scores_gemma":[0.0005334172,0.00022794437,0.0007753175,0.0016768778,0.00027097447,0.00029071438,0.00059299386,0.0006564976,0.0010453919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002991028,0.00007457181,0.0022399267,0.00019647804,0.000022545588,0.0002606451,0.00009592933,0.00018103825,0.9905342,0.000044022134,0.00013148475,0.0059201494],"study_design_scores_gemma":[0.00031108482,0.0015075316,0.3957118,0.00022066216,0.00067317125,0.00447662,0.0010291394,0.00463615,0.5413726,0.00031137528,0.049610093,0.00013980294],"about_ca_topic_score_codex":0.0042590923,"about_ca_topic_score_gemma":0.0028353445,"teacher_disagreement_score":0.0042590923,"about_ca_system_score_codex":0.00031069937,"about_ca_system_score_gemma":0.0005791186,"threshold_uncertainty_score":0.008468568},"labels":[],"label_agreement":null},{"id":"W2941821118","doi":"10.1186/s12866-019-1438-2","title":"Development of flow cytometry based adherence assay for Neisseria gonorrhoeae using 5′-carboxyfluorosceinsuccidyl ester","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Neisseria gonorrhoeae; Biology; Flow cytometry; Microbiology; Parasitology; Immunology; Zoology","score_opus":0.03197721386766765,"score_gpt":0.27310889036043473,"score_spread":0.24113167649276707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941821118","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28499278,0.005267581,0.6910259,0.00076963735,0.00057971606,0.002329297,0.002188466,0.0037629337,0.009083589],"genre_scores_gemma":[0.2613408,0.0048638396,0.71488917,0.0005105901,0.00014998263,0.0040938426,0.0053541134,0.00017543227,0.008622217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985826,0.00032492564,0.00012306152,0.0003810313,0.0004707725,0.00011759109],"domain_scores_gemma":[0.99898237,0.00030519188,0.00014238076,0.00007841998,0.00041660396,0.000074986674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016208091,0.0014937744,0.0008916941,0.0012673881,0.0003944662,0.0005328051,0.0010296092,0.0012595904,0.002802675],"category_scores_gemma":[0.0010045924,0.00051039195,0.00073123537,0.00058267475,0.00040080873,0.00051034405,0.000469065,0.0015064161,0.0016313803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034215085,0.00005207251,0.0003126795,0.00009776398,0.000005828011,0.000019925496,0.000022044347,0.00006804671,0.9944155,0.00008688744,0.00015500649,0.0047299685],"study_design_scores_gemma":[0.000023378538,0.00046765702,0.0032266735,0.00003831402,0.000029231616,0.00033788555,0.000021499189,0.004752114,0.984202,0.00010157149,0.0067649013,0.000034778317],"about_ca_topic_score_codex":0.00076557783,"about_ca_topic_score_gemma":0.0013331483,"teacher_disagreement_score":0.002802675,"about_ca_system_score_codex":0.0005269666,"about_ca_system_score_gemma":0.00048357333,"threshold_uncertainty_score":0.00937587},"labels":[],"label_agreement":null},{"id":"W2941925570","doi":"10.1186/s12866-019-1398-6","title":"Single stranded (ss)RNA-mediated antiviral response against infectious laryngotracheitis virus infection","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"Alberta Agriculture and Forestry; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Biology; Virology; Parasitology; RNA; Medical microbiology; Virus; Microbiology; Gene; Genetics","score_opus":0.013961232861521075,"score_gpt":0.25397296203573744,"score_spread":0.24001172917421637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941925570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897625,0.0048582237,0.0021940488,0.00011303677,0.000096449534,0.000077314384,0.00047090076,0.00007247066,0.0023551777],"genre_scores_gemma":[0.99183816,0.0017778461,0.0028665646,0.00008715472,0.00004087541,0.00007863343,0.0005857263,0.0000079962,0.0027171243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999143,0.000016546428,0.000008614829,0.000019586358,0.000022761258,0.00001826797],"domain_scores_gemma":[0.99993134,0.000012310822,0.000024685418,0.00000513232,0.00001476255,0.000011775277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010850055,0.00025821017,0.00016828586,0.00013114905,0.00008633426,0.00013467378,0.00010749584,0.00022978589,0.0018733364],"category_scores_gemma":[0.000077152654,0.00005515472,0.00021905887,0.000034835517,0.00014447406,0.00009831649,0.00009498208,0.00022040558,0.00036941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079282116,0.00001612672,0.00022979909,0.00009873682,0.000002545488,0.000018127559,0.000008015286,0.000028743589,0.9983119,0.000011882971,0.00003115609,0.0011638268],"study_design_scores_gemma":[0.000036570327,0.0032014018,0.021146953,0.00005252399,0.00003713843,0.00054694206,0.00008034258,0.0006427054,0.9697584,0.00005452461,0.004435647,0.0000068317836],"about_ca_topic_score_codex":0.00017589764,"about_ca_topic_score_gemma":0.0003627353,"teacher_disagreement_score":0.0018733364,"about_ca_system_score_codex":0.00013261927,"about_ca_system_score_gemma":0.00011385174,"threshold_uncertainty_score":0.0062669516},"labels":[],"label_agreement":null},{"id":"W2945108961","doi":"10.1186/s12866-019-1463-1","title":"Application of lab-on-a-chip multiplex cassette PCR for the detection of enterohemorrhagic Escherichia coli","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency; Agriculture Funding Consortium; Alberta Innovates; Alberta Innovates Bio Solutions; Alberta Agriculture and Forestry","keywords":"Multiplex; Biology; STX2; Escherichia coli; Primer (cosmetics); Multiplex polymerase chain reaction; Chromatography; Molecular biology; Detection limit; Polymerase chain reaction; Microbiology; Shiga toxin; Gene; Chemistry; Genetics","score_opus":0.01035686206281209,"score_gpt":0.20977040779965922,"score_spread":0.19941354573684714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945108961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7991291,0.0017991732,0.1945932,0.00012326604,0.00011410416,0.00035279474,0.0005654039,0.0010491492,0.0022737675],"genre_scores_gemma":[0.75632524,0.0012639957,0.23858605,0.00012384387,0.00003579789,0.00054773013,0.0010080151,0.000061070125,0.0020482421],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992417,0.00013537385,0.000043485263,0.00029249146,0.00020843664,0.00007846563],"domain_scores_gemma":[0.9997008,0.00010732036,0.00005223378,0.000050402126,0.00006311374,0.000026110902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006269795,0.00076016196,0.00042149192,0.00046714966,0.00014204707,0.00042223508,0.00042756175,0.00046638455,0.00097549916],"category_scores_gemma":[0.00046361514,0.0003015651,0.00032189317,0.00027872474,0.00024198813,0.00020490214,0.00033431844,0.0003995274,0.0005201056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065551896,0.0000477094,0.0005929283,0.000054781005,0.0000102724725,0.00003169048,0.000023792185,0.00018506477,0.99301046,0.000033456025,0.00006285658,0.0058813887],"study_design_scores_gemma":[0.0000075785806,0.000475291,0.004585407,0.000009514757,0.000035766894,0.0002921725,0.000025736732,0.0054160985,0.98759913,0.00003688115,0.0015038254,0.000012571404],"about_ca_topic_score_codex":0.00021282848,"about_ca_topic_score_gemma":0.0003703693,"teacher_disagreement_score":0.00097549916,"about_ca_system_score_codex":0.00016243797,"about_ca_system_score_gemma":0.00017540054,"threshold_uncertainty_score":0.0033158064},"labels":[],"label_agreement":null},{"id":"W2955020455","doi":"10.1186/s12866-019-1529-0","title":"The dimerization interface in VraR is essential for induction of the cell wall stress response in Staphylococcus aureus: a potential druggable target","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Peptidoglycan; Response regulator; Two-component regulatory system; Staphylococcus aureus; Histidine kinase; Druggability; Lipid II; Microbiology; Phosphorylation; Signal transduction; Autophosphorylation; Transcription factor; Cell biology; Protein kinase A; Biochemistry; Gene; Mutant; Bacteria; Genetics","score_opus":0.0067858220939853945,"score_gpt":0.24950817604438105,"score_spread":0.24272235395039565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955020455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897343,0.0015100259,0.0068467823,0.00022982091,0.00006349249,0.000040224328,0.00030733147,0.000068361674,0.0011995696],"genre_scores_gemma":[0.9959407,0.0002694014,0.0027210133,0.000074811345,0.0000075532066,0.000012109248,0.00033472656,0.00001370783,0.00062586676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998617,0.000034723424,0.000011855686,0.000026175745,0.000039331637,0.000026282303],"domain_scores_gemma":[0.9998839,0.000021219168,0.00003788679,0.000010793688,0.000014332885,0.000031829237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001614354,0.00023864249,0.00021346906,0.00007637467,0.00017502313,0.00018393727,0.00027465675,0.00027552014,0.0013126276],"category_scores_gemma":[0.00010718438,0.00009158906,0.00029470076,0.000092063834,0.00016884872,0.00014238147,0.00017339578,0.00064458186,0.00051036326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062303065,0.00002950174,0.00013581378,0.000019433757,0.0000028931634,0.00005716853,0.000007767757,0.00008692057,0.9989673,0.00009170815,0.000030256617,0.00050896965],"study_design_scores_gemma":[0.000022337437,0.00020893414,0.0028125164,0.0000069681046,0.000014453541,0.0006204228,0.000036251018,0.0017443694,0.99205446,0.00007070203,0.0023992886,0.000009356386],"about_ca_topic_score_codex":0.0003403862,"about_ca_topic_score_gemma":0.00040859994,"teacher_disagreement_score":0.0013126276,"about_ca_system_score_codex":0.0002478964,"about_ca_system_score_gemma":0.00021527677,"threshold_uncertainty_score":0.004391134},"labels":[],"label_agreement":null},{"id":"W2955273819","doi":"10.1186/s12866-019-1519-2","title":"Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Actinobacteria; Feces; Gut flora; Population; Relative species abundance; Firmicutes; Microbiome; Abundance (ecology); 16S ribosomal RNA; Ecology; Bacteria; Bioinformatics; Immunology; Genetics","score_opus":0.031699561788850146,"score_gpt":0.3216693257896495,"score_spread":0.2899697640007994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955273819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996431,0.00033080232,0.0017903327,0.00003408807,0.00004351714,0.0008830494,0.00026049052,0.000021862017,0.00020486106],"genre_scores_gemma":[0.9816576,0.00068278244,0.01234583,0.00022966997,0.00012893483,0.002337863,0.0013145326,0.00005202115,0.0012505668],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99877495,0.00040725086,0.0001272477,0.00033310245,0.0002479745,0.00010945589],"domain_scores_gemma":[0.9970427,0.00083607394,0.0005754922,0.00047723632,0.00075704185,0.00031146576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032694347,0.001056717,0.00075703603,0.00039430335,0.0006755743,0.00078267546,0.00046036558,0.0006865377,0.002688672],"category_scores_gemma":[0.0036010817,0.00036792192,0.00093049114,0.00033498075,0.00095140096,0.000482504,0.00077910017,0.0005658638,0.00065198645],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.085518785,0.028532207,0.10713972,0.002354858,0.0009682926,0.0005881581,0.0020861095,0.0011813393,0.6934673,0.00020683369,0.0011689344,0.07678743],"study_design_scores_gemma":[0.0023715459,0.440135,0.3505143,0.0002625181,0.0022830416,0.0013132603,0.0013944936,0.0018947921,0.19352332,0.0003202555,0.0058093243,0.00017815999],"about_ca_topic_score_codex":0.00059789495,"about_ca_topic_score_gemma":0.0008106627,"teacher_disagreement_score":0.0032694347,"about_ca_system_score_codex":0.00033971755,"about_ca_system_score_gemma":0.0006041076,"threshold_uncertainty_score":0.017290652},"labels":[],"label_agreement":null},{"id":"W2966174876","doi":"10.1186/s12866-019-1541-4","title":"Detection of pathogenic Escherichia coli on potentially contaminated beef carcasses using cassette PCR and conventional PCR","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Livestock and Meat Agency; Agriculture Funding Consortium; Alberta Innovates; Alberta Agriculture and Forestry","keywords":"STX2; Biology; Polymerase chain reaction; Microbiology; Escherichia coli; Gene cassette; Shiga toxin; Gene; Genetics","score_opus":0.01626501242051424,"score_gpt":0.2597552796831631,"score_spread":0.24349026726264886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966174876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9788745,0.0014176792,0.01692715,0.00005655136,0.000031635493,0.0001599268,0.0007733268,0.00015313111,0.0016061064],"genre_scores_gemma":[0.9549303,0.0009902887,0.040779173,0.000091012545,0.00003176194,0.00012463427,0.002219175,0.000019535315,0.0008141649],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825436,0.0002410251,0.00012751573,0.0005475436,0.00070822035,0.000121334975],"domain_scores_gemma":[0.9978592,0.00042103662,0.0006927016,0.00017969207,0.0007096075,0.00013781068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009991418,0.00072373694,0.00040218222,0.0015933908,0.00015038087,0.0006361527,0.00056314317,0.000660517,0.0009954666],"category_scores_gemma":[0.00160135,0.00024590886,0.0002409636,0.0010474774,0.00054219144,0.00038510864,0.0003779518,0.0003325634,0.0005772441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006807177,0.00030726977,0.14397535,0.00042178217,0.000053564498,0.0005078536,0.0003096753,0.000307863,0.8110941,0.0000762525,0.00020640276,0.04205916],"study_design_scores_gemma":[0.000084762956,0.0069592944,0.5384257,0.0001948313,0.00025771477,0.009801364,0.0008655078,0.007830401,0.43013972,0.00011554188,0.005240164,0.00008493815],"about_ca_topic_score_codex":0.001126839,"about_ca_topic_score_gemma":0.0016266999,"teacher_disagreement_score":0.0015933908,"about_ca_system_score_codex":0.00029427934,"about_ca_system_score_gemma":0.00019951537,"threshold_uncertainty_score":0.0052840114},"labels":[],"label_agreement":null},{"id":"W2970283910","doi":"10.1186/s12866-019-1548-x","title":"Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Public Health Agency of Canada; Alberta Health Services; Alberta Ministry of Agriculture and Forestry; Agriculture Food and Rural Development; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Beef Cattle Research Council; McGill University; Australian Government; Génome Québec; National Institutes of Health; Government of Canada","keywords":"Resistome; Metagenomics; Biology; Microbiome; Sewage; Antibiotic resistance; Firmicutes; Tetracycline; Veterinary medicine; Microbiology; Antibiotics; Integron; Bacteria; Environmental science; Environmental engineering; Bioinformatics","score_opus":0.017647707431295494,"score_gpt":0.24565848768564202,"score_spread":0.22801078025434654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970283910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99946684,0.000054573655,0.00007559488,0.0000044081503,5.106066e-7,0.0000034881816,0.00024961005,0.0000022080715,0.00014289553],"genre_scores_gemma":[0.9980677,0.000111691836,0.00038763141,0.000017480808,0.0000014692623,0.0000082598535,0.0009840911,0.0000025515753,0.0004191129],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99977225,0.000018763494,0.000011039603,0.00006464007,0.00006184214,0.000071390816],"domain_scores_gemma":[0.9997949,0.000024648341,0.00005703339,0.00000691505,0.00006861351,0.000047854068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018455954,0.00026086604,0.00024881394,0.0008386388,0.0005272228,0.00079924765,0.00014670171,0.0002163779,0.0006179815],"category_scores_gemma":[0.00021110335,0.00015270892,0.00016080735,0.00091549556,0.00034200557,0.00014992815,0.00036941597,0.0001483034,0.000105794745],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006172219,0.00008582539,0.6756845,0.00014793729,0.00008541939,0.0002356821,0.0015905789,0.00026759756,0.31177878,0.000049874423,0.00008591907,0.009370608],"study_design_scores_gemma":[0.0000024399553,0.00009354656,0.9939452,0.000006376709,0.000019065059,0.000090131594,0.000943951,0.00013735486,0.0044698403,0.000009364175,0.00027957105,0.0000031315903],"about_ca_topic_score_codex":0.052656725,"about_ca_topic_score_gemma":0.11905968,"teacher_disagreement_score":0.052656725,"about_ca_system_score_codex":0.0006397436,"about_ca_system_score_gemma":0.0007589039,"threshold_uncertainty_score":0.104700446},"labels":[],"label_agreement":null},{"id":"W2972922274","doi":"10.1186/s12866-019-1577-5","title":"Missense mutations in a transmembrane domain of the Komagataeibacter xylinus BcsA lead to changes in cellulose synthesis","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Advanced Cellulose Research Studies","field":"Materials Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"Natural Sciences and Engineering Research Council of Canada; University of New England; University of Manitoba","keywords":"Bacterial cellulose; Cellulose; Biochemistry; Mutant; Transmembrane domain; Chemistry; Biology; Gene","score_opus":0.01807070302523335,"score_gpt":0.2636415179723093,"score_spread":0.24557081494707594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972922274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965545,0.00019218744,0.0017781307,0.000095174975,0.00006137637,0.000032287542,0.000550427,0.00010006293,0.00063577335],"genre_scores_gemma":[0.9967429,0.00015352272,0.0014351541,0.000046884565,0.000014886439,0.00001966686,0.00041412612,0.00004170055,0.001131187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980253,0.000050177227,0.000033424283,0.000031578493,0.00005627161,0.000026147549],"domain_scores_gemma":[0.99957436,0.00013101666,0.000157196,0.000036760004,0.000025708894,0.00007499026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013505855,0.00052816235,0.00026856965,0.00030418002,0.00021255655,0.00029073047,0.00024846927,0.00052164175,0.002085608],"category_scores_gemma":[0.00034422157,0.00016587232,0.00043266013,0.00032623668,0.0003814946,0.00012165634,0.00036763932,0.0004655691,0.0007218771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022700301,0.000063395535,0.0005254346,0.0000503408,0.00002261412,0.0010443652,0.00003003906,0.00021521667,0.99559575,0.0001529584,0.00007690403,0.0019958757],"study_design_scores_gemma":[0.000073383875,0.00049588335,0.017525107,0.0000331142,0.00008504604,0.0035228948,0.0001443131,0.0032605398,0.97157615,0.00017656638,0.0030739706,0.000033009142],"about_ca_topic_score_codex":0.0010201572,"about_ca_topic_score_gemma":0.00075837766,"teacher_disagreement_score":0.002085608,"about_ca_system_score_codex":0.00032895943,"about_ca_system_score_gemma":0.0002550096,"threshold_uncertainty_score":0.0069770217},"labels":[],"label_agreement":null},{"id":"W2994622523","doi":"10.1186/s12866-019-1667-4","title":"Role of membrane compartment occupied by Can1 (MCC) and eisosome subdomains in plant pathogenicity of the necrotrophic fungus Alternaria brassicicola","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cellular transport and secretion","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Alternaria brassicicola; Pathogenic fungus; Microbiology; Spore; Plant Immunity; Fungus; Mutant; Plant disease; Botany; Arabidopsis; Genetics; Gene; Biotechnology","score_opus":0.00420311864615319,"score_gpt":0.18010016938036041,"score_spread":0.17589705073420722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2994622523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997589,0.00076570106,0.0008015469,0.00005251021,0.0000069842085,0.0000051821366,0.00019812801,0.000030250538,0.00055073225],"genre_scores_gemma":[0.9984408,0.00015593019,0.00046438223,0.000012136081,0.0000017228799,0.000004138512,0.00031536756,0.0000066312464,0.00059889443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992895,0.0000087243325,0.000006103631,0.000019943569,0.000019327723,0.000016942231],"domain_scores_gemma":[0.9998429,0.0000201461,0.00005971005,0.000014635033,0.000021859732,0.000040761337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007980601,0.00033564825,0.00012782132,0.00020046251,0.00018341065,0.00035995396,0.00012233209,0.0002609735,0.00078477623],"category_scores_gemma":[0.000101753765,0.000090353766,0.00014466899,0.00015732221,0.00015948266,0.00024703142,0.00023867753,0.0001870688,0.00033492487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000107841246,0.000006597124,0.00072440214,0.000030418078,0.0000027757678,0.00006341583,0.00001176346,0.000046067627,0.9986307,0.000047427908,0.00001285582,0.00031566317],"study_design_scores_gemma":[0.000009419272,0.00008415715,0.032963574,0.000010735768,0.000027059948,0.0005771399,0.00009763257,0.0019265005,0.9626553,0.00008297577,0.0015583908,0.000007100262],"about_ca_topic_score_codex":0.000874891,"about_ca_topic_score_gemma":0.00093219575,"teacher_disagreement_score":0.000874891,"about_ca_system_score_codex":0.0004910352,"about_ca_system_score_gemma":0.00014711046,"threshold_uncertainty_score":0.0035627484},"labels":[],"label_agreement":null},{"id":"W2998500456","doi":"10.1186/s12866-019-1680-7","title":"Composite genome sequence of Bacillus clausii, a probiotic commercially available as Enterogermina®, and insights into its probiotic properties","year":2019,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University Grants Commission; Council of Scientific and Industrial Research, India; McGill University","keywords":"Biology; Probiotic; Microbiology; Bacteriocin; Bacillus subtilis; Tetracycline; Antibiotic resistance; Antibiotics; Bacteria; Antimicrobial; Genetics","score_opus":0.023295625286368287,"score_gpt":0.24098724191687795,"score_spread":0.21769161663050968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998500456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7927429,0.012519487,0.020406904,0.0010070201,0.00027058652,0.0003144448,0.16568924,0.0008459762,0.006203485],"genre_scores_gemma":[0.4753207,0.006955053,0.051578987,0.00036199632,0.00013354438,0.00029765052,0.45948976,0.0003523419,0.0055100727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997974,0.000020684427,0.00001892158,0.00006174363,0.00007429309,0.000027005764],"domain_scores_gemma":[0.9995302,0.00010192886,0.00012016445,0.000033848297,0.00012163437,0.00009228568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022624811,0.000744297,0.0007151408,0.0014483333,0.00041631804,0.000663647,0.00031073164,0.0007803861,0.001643774],"category_scores_gemma":[0.00071722793,0.00022744853,0.0007489128,0.002183104,0.00020943211,0.00034155478,0.00041151667,0.0010138038,0.0011736522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011529638,0.00014508057,0.0041357544,0.0012184639,0.00006454645,0.0005337776,0.00029367232,0.00068018975,0.9676588,0.0002714554,0.0012961299,0.02254911],"study_design_scores_gemma":[0.00031425306,0.0021507703,0.51866925,0.0007588576,0.001460119,0.0076034237,0.001305525,0.0094185695,0.28990787,0.0015970697,0.16656832,0.00024598773],"about_ca_topic_score_codex":0.0033707607,"about_ca_topic_score_gemma":0.0032865955,"teacher_disagreement_score":0.0033707607,"about_ca_system_score_codex":0.0003378852,"about_ca_system_score_gemma":0.0010232866,"threshold_uncertainty_score":0.006702304},"labels":[],"label_agreement":null},{"id":"W3001709652","doi":"10.1186/s12866-019-1683-4","title":"Comparative genomics of multidrug-resistant Enterococcus spp. isolated from wastewater treatment plants","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge; Toronto Metropolitan University; Agriculture and Agri-Food Canada; Kingston Health Sciences Centre; Public Health Ontario; Canadian Food Inspection Agency; Queen's University","funders":"Beef Cattle Research Council; Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Enterococcus faecium; Biology; Enterococcus faecalis; Microbiology; Virulence; Enterococcus; Mobile genetic elements; Plasmid; Gene; Genetics; Antibiotics; Escherichia coli","score_opus":0.04393531742258255,"score_gpt":0.2791595645165582,"score_spread":0.23522424709397566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3001709652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994766,0.00032164794,0.0005939664,0.000031272273,0.000004537235,0.000020100639,0.0036601378,0.000021795742,0.000580619],"genre_scores_gemma":[0.97602344,0.00044743958,0.0037670555,0.00008476999,0.000008193439,0.00006751656,0.01814914,0.000033755496,0.0014186727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985695,0.000013088103,0.000012077522,0.00005047475,0.000032474654,0.0000349958],"domain_scores_gemma":[0.9997876,0.000047722508,0.0000567542,0.000011154716,0.000056924353,0.000039790648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013148852,0.00037393,0.00032651515,0.0009905419,0.00023648729,0.00043080485,0.00018104674,0.00030071152,0.0009948967],"category_scores_gemma":[0.00033821282,0.00011676714,0.000518239,0.0013186485,0.00013685889,0.00017850859,0.0004056573,0.00030075252,0.00031573628],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042954736,0.00007114567,0.01005818,0.00017407772,0.000045375044,0.00014855985,0.0002515892,0.00019879428,0.9838912,0.000043499098,0.000087783745,0.004600309],"study_design_scores_gemma":[0.000034944387,0.0011114447,0.8302622,0.00006868557,0.00024495582,0.0022201277,0.0009933553,0.0023485413,0.1568816,0.0001754722,0.0056280578,0.000030693132],"about_ca_topic_score_codex":0.001531959,"about_ca_topic_score_gemma":0.0013724386,"teacher_disagreement_score":0.001531959,"about_ca_system_score_codex":0.0002711179,"about_ca_system_score_gemma":0.00021418123,"threshold_uncertainty_score":0.0033282638},"labels":[],"label_agreement":null},{"id":"W3008397582","doi":"10.1186/s12866-020-1705-2","title":"An operon consisting of a P-type ATPase gene and a transcriptional regulator gene responsible for cadmium resistances in Bacillus vietamensis 151–6 and Bacillus marisflavi 151–25","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Natural Science Foundation of China","keywords":"Biology; Operon; Microbiology; Efflux; Cadmium; Gene; Bacillus (shape); Gene cluster; Transcriptome; Bacteria; Gene expression; Escherichia coli; Genetics; Chemistry","score_opus":0.021434975863731647,"score_gpt":0.23817539823691602,"score_spread":0.2167404223731844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008397582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632347,0.0005073765,0.0018934222,0.000048863418,0.000018609926,0.000022539647,0.0005944954,0.000066038345,0.00052524585],"genre_scores_gemma":[0.9895493,0.00022808311,0.0044913683,0.000030837593,0.000010220483,0.0000478889,0.0034599546,0.000024317147,0.0021580043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998273,0.000015872696,0.000022625796,0.00006418597,0.00004275133,0.000027210212],"domain_scores_gemma":[0.99984837,0.000021541047,0.000047127887,0.00001608928,0.000024696908,0.000042284384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009897183,0.000449142,0.0003786045,0.00030185358,0.00017405157,0.00027324216,0.00019128295,0.00023685307,0.0008704732],"category_scores_gemma":[0.0002548018,0.00016610895,0.0003365677,0.00038439943,0.00016179352,0.00017127684,0.0003139482,0.00034645238,0.00036286862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011193571,0.000022479799,0.0016157957,0.00005706103,0.0000056235685,0.00012198946,0.000053195654,0.000059118203,0.995129,0.000050210016,0.000036832727,0.0027366695],"study_design_scores_gemma":[0.000058111724,0.00087174866,0.21678154,0.000073468305,0.00012689597,0.0029761575,0.0005136879,0.002899501,0.7674657,0.00017610403,0.008021032,0.000036048583],"about_ca_topic_score_codex":0.0012432875,"about_ca_topic_score_gemma":0.0008539855,"teacher_disagreement_score":0.0012432875,"about_ca_system_score_codex":0.00026207487,"about_ca_system_score_gemma":0.00028146163,"threshold_uncertainty_score":0.002911985},"labels":[],"label_agreement":null},{"id":"W3010209973","doi":"10.1186/s12866-019-1668-3","title":"In vitro synergy between sodium deoxycholate and furazolidone against enterobacteria","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Business, Innovation and Employment; Keio University; Institute of Genetics; New Zealand Vice-Chancellors' Committee; Massey University; Callaghan Innovation","keywords":"Furazolidone; Escherichia coli; Biology; Nitrofuran; Efflux; Salmonella enterica; Microbiology; Klebsiella pneumoniae; Enterobacteriaceae; Colistin; Antimicrobial; Salmonella; Bacteria; Biochemistry; Antibiotics; Gene","score_opus":0.011132918362841093,"score_gpt":0.21591546246718354,"score_spread":0.20478254410434246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010209973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993666,0.0033801377,0.0011044634,0.000072938696,0.000037783917,0.000057478257,0.00028694817,0.000037213103,0.0013570401],"genre_scores_gemma":[0.99491924,0.0011769382,0.0025248774,0.000036611775,0.00001989614,0.000041997315,0.0004229751,0.000010071946,0.0008473203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962866,0.0001378973,0.000047934165,0.000050270326,0.00008330078,0.00005190284],"domain_scores_gemma":[0.99971646,0.00009454505,0.000060470986,0.00003611249,0.000047985577,0.00004442988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002244444,0.00049699785,0.00047105132,0.0002537252,0.000117460426,0.00022939096,0.00025639604,0.00024033333,0.0008802426],"category_scores_gemma":[0.00024217163,0.00012911233,0.00033317998,0.00021215546,0.00014541305,0.00013603673,0.00033679252,0.00021376624,0.00027727493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073795806,0.00017678685,0.0007850168,0.00013515285,0.000031267555,0.00004846552,0.00002635065,0.00022943926,0.99359494,0.000017345043,0.000060085003,0.004157288],"study_design_scores_gemma":[0.00003672755,0.003131536,0.004603444,0.000014338973,0.000046144854,0.00017799802,0.000027430622,0.00042762503,0.99015486,0.000014172311,0.0013597071,0.0000059940303],"about_ca_topic_score_codex":0.0006999873,"about_ca_topic_score_gemma":0.001375029,"teacher_disagreement_score":0.0008802426,"about_ca_system_score_codex":0.00016729457,"about_ca_system_score_gemma":0.00029955577,"threshold_uncertainty_score":0.0029447079},"labels":[],"label_agreement":null},{"id":"W3010646857","doi":"10.1186/s12866-020-01724-8","title":"The influence of blood on the human gut microbiome","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Merck Sharp and Dohme","keywords":"Prevotella; Faecalibacterium prausnitzii; Microbiome; Biology; Roseburia; Bacteroides; Feces; Physiology; Gut flora; Human microbiome; Colorectal cancer; Immunology; Cancer; Internal medicine; Microbiology; Medicine; Bioinformatics; Bacteria; Genetics","score_opus":0.016724673275824,"score_gpt":0.25354902915254457,"score_spread":0.23682435587672057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010646857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923064,0.005448233,0.00039322523,0.00029599768,0.000036765403,0.000010377924,0.00053680944,0.0000073394535,0.00096488185],"genre_scores_gemma":[0.9977436,0.0011826612,0.00043077182,0.00014694816,0.000039871255,0.00001018134,0.00029512777,0.000004671682,0.00014615014],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993278,0.00029137902,0.000035586618,0.00013650698,0.000105738625,0.00010298399],"domain_scores_gemma":[0.9991973,0.0002173354,0.00029511304,0.000047066667,0.00010661909,0.0001365411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004246623,0.00020576909,0.00033925037,0.00052077434,0.00037030785,0.0007127289,0.00013743914,0.00029584905,0.0012879684],"category_scores_gemma":[0.001867918,0.00012542264,0.00020979666,0.00062973244,0.00035053,0.00031445624,0.0005624726,0.00027400733,0.00021082938],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016457019,0.00010032797,0.9303074,0.0002751637,0.00019742895,0.00034195083,0.0004671104,0.00014080657,0.032724276,0.00018000437,0.00065227185,0.032967515],"study_design_scores_gemma":[0.000008216841,0.00032529663,0.9950656,0.000052815783,0.00007517669,0.00052409543,0.00035649637,0.00022553577,0.0016826709,0.00017406362,0.00150128,0.000008883388],"about_ca_topic_score_codex":0.0017632489,"about_ca_topic_score_gemma":0.0017371608,"teacher_disagreement_score":0.0017632489,"about_ca_system_score_codex":0.00024273127,"about_ca_system_score_gemma":0.00026463292,"threshold_uncertainty_score":0.0043087006},"labels":[],"label_agreement":null},{"id":"W3012556396","doi":"10.1186/s12866-020-1704-3","title":"The canine oral microbiome: variation in bacterial populations across different niches","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Mars Petcare","keywords":"Biology; Oral Microbiome; Ecological niche; Microbiome; Saliva; Tongue; 16S ribosomal RNA; Microbiology; Dental plaque; Niche; Bacteria; Genetics; Ecology; Pathology; Habitat","score_opus":0.06878320344514884,"score_gpt":0.3380314735489779,"score_spread":0.26924827010382907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012556396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982393,0.00064614095,0.0002560947,0.00003054077,0.0000045116167,0.00001278726,0.0003908066,0.000010925993,0.00040894008],"genre_scores_gemma":[0.9974262,0.00039889832,0.0009533008,0.000036679434,0.0000068414897,0.000019164736,0.0008233275,0.000008707818,0.00032679926],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995721,0.000034150555,0.000023210629,0.00011581157,0.00017496651,0.000079780875],"domain_scores_gemma":[0.99964225,0.00004087772,0.00014310038,0.000018440043,0.0000987056,0.00005661368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004684888,0.00026346833,0.00046759692,0.0009362801,0.00044171774,0.0013102981,0.00018162892,0.0004729944,0.0011824397],"category_scores_gemma":[0.00048217064,0.00024310929,0.00024526188,0.0007031752,0.00054738665,0.00038753028,0.0005923903,0.0002970681,0.00027589526],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017502051,0.00015550539,0.35433292,0.0004064227,0.0001262775,0.00041119545,0.0012989437,0.00022441926,0.6194528,0.0001451892,0.00044131515,0.021254778],"study_design_scores_gemma":[0.000010610838,0.0005265872,0.9806309,0.000038130827,0.00009310013,0.0014308072,0.0011333403,0.00037205796,0.013474714,0.0000937941,0.0021782517,0.000017736473],"about_ca_topic_score_codex":0.0026535643,"about_ca_topic_score_gemma":0.0048390795,"teacher_disagreement_score":0.0026535643,"about_ca_system_score_codex":0.00044374523,"about_ca_system_score_gemma":0.0003884864,"threshold_uncertainty_score":0.005276203},"labels":[],"label_agreement":null},{"id":"W3013689222","doi":"10.1186/s12866-020-01752-4","title":"Clinical and microbiological characteristics of Cryptococcus gattii isolated from 7 hospitals in China","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"General Hospital of People’s Liberation Army","keywords":"Biology; Cryptococcus gattii; Parasitology; China; Cryptococcus; Mycology; Medical microbiology; Cryptococcosis; Microbiology; Veterinary medicine; Zoology; Botany; Medicine","score_opus":0.028986860545355788,"score_gpt":0.29728290724692386,"score_spread":0.2682960467015681,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013689222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995172,0.00008751855,0.000041519896,0.000024081353,0.000003236178,0.000019822708,0.00011643066,0.0000021167784,0.00018798654],"genre_scores_gemma":[0.99919575,0.00011278141,0.0001296975,0.000050133243,0.000007067389,0.000014172957,0.00025758595,0.0000014688538,0.00023144686],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996146,0.000023989372,0.000058386002,0.0000988913,0.00008198158,0.00012211924],"domain_scores_gemma":[0.9994779,0.000054110536,0.00013548066,0.000019710373,0.000102118516,0.00021070123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002723345,0.0004688985,0.00038358587,0.0012098143,0.0009875096,0.0004051226,0.00022587116,0.00044015015,0.00088639924],"category_scores_gemma":[0.0005937631,0.0002613515,0.00027145856,0.0012485173,0.0005541719,0.00025925884,0.00047246992,0.00024671108,0.00011888905],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017873764,0.000068163674,0.9837377,0.000060563554,0.000018572779,0.0038952755,0.0009863317,0.00006983798,0.007229058,0.000020183683,0.00015377718,0.003581759],"study_design_scores_gemma":[0.000009892966,0.000246077,0.99394435,0.000011529948,0.000019505213,0.0029547154,0.0012326922,0.00015915038,0.0009810892,0.000015101784,0.00041593247,0.0000099562385],"about_ca_topic_score_codex":0.022633309,"about_ca_topic_score_gemma":0.019230952,"teacher_disagreement_score":0.022633309,"about_ca_system_score_codex":0.00097077666,"about_ca_system_score_gemma":0.0012119325,"threshold_uncertainty_score":0.045003176},"labels":[],"label_agreement":null},{"id":"W3021368626","doi":"10.1186/s12866-020-01796-6","title":"Low phosphatase activity of LiaS and strong LiaR-DNA affinity explain the unusual LiaS to LiaR in vivo stoichiometry","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Deutsche Forschungsgemeinschaft; York University","keywords":"Phosphorylation; Biology; Phosphatase; In vivo; Biophysics; Cell biology; Biochemistry; Genetics","score_opus":0.01526984025883614,"score_gpt":0.23537988478040142,"score_spread":0.2201100445215653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021368626","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9697529,0.0018276108,0.0253597,0.00027820747,0.000029015637,0.000030406442,0.0003186907,0.0005531273,0.0018502858],"genre_scores_gemma":[0.99593854,0.00019574257,0.0031384472,0.000030943072,0.0000059485365,0.000009640946,0.00015790566,0.000024025907,0.0004987087],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997185,0.000042480206,0.000022700446,0.00010293724,0.00005988887,0.00005343707],"domain_scores_gemma":[0.99965405,0.0001042939,0.0001253089,0.00003405331,0.00003211879,0.000049999024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003260815,0.0005702312,0.00037199788,0.00029957606,0.00013614469,0.00057514757,0.0004516556,0.0007055552,0.002121624],"category_scores_gemma":[0.0005590479,0.00035346724,0.00033117284,0.00013552466,0.0005574365,0.0005720194,0.00031362483,0.00066147075,0.0007900131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038770515,0.000007940317,0.00056473666,0.000040743522,0.0000034205673,0.00003763789,0.000006791817,0.00011577012,0.9983627,0.00017893074,0.000017256072,0.00062521023],"study_design_scores_gemma":[0.0000070031015,0.000075211494,0.0061270795,0.000004623597,0.000010514535,0.00037585435,0.00002402877,0.0037774418,0.98845565,0.00044545534,0.00068769825,0.000009515729],"about_ca_topic_score_codex":0.00037110178,"about_ca_topic_score_gemma":0.00031986984,"teacher_disagreement_score":0.002121624,"about_ca_system_score_codex":0.00042691355,"about_ca_system_score_gemma":0.00019858313,"threshold_uncertainty_score":0.0070975423},"labels":[],"label_agreement":null},{"id":"W3021440921","doi":"10.1186/s12866-020-01737-3","title":"Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"Fundamental Research Funds for the Central Universities; Central South University; Chinese Academy of Sciences; Natural Science Foundation of Hainan Province; Institute of Microbiology, Chinese Academy of Sciences; National Natural Science Foundation of China; Youth Talent Foundation of Hunan Province of China","keywords":"Biology; Oxidizing agent; Bacteria; Bioremediation; Bacillus (shape); Antimony; Microbiology; Genome; genomic DNA; Gene; Genetics","score_opus":0.13330471791587975,"score_gpt":0.27970506755200086,"score_spread":0.1464003496361211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021440921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8853424,0.007108194,0.023485914,0.0004522548,0.00012996385,0.00030235763,0.078426115,0.0008498414,0.0039030234],"genre_scores_gemma":[0.7042669,0.005370415,0.0488798,0.00039777663,0.00007756486,0.00037458815,0.23678842,0.00046942296,0.0033750862],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997085,0.000026040327,0.000028790964,0.000094324634,0.00009708577,0.000045149984],"domain_scores_gemma":[0.9996222,0.00006069829,0.00010092027,0.00003644919,0.00009607983,0.00008359981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026021173,0.000817475,0.00085517345,0.0011758405,0.00052929606,0.00045085762,0.00033546347,0.000516335,0.0015236419],"category_scores_gemma":[0.00046964036,0.00025814938,0.0013544378,0.0022981765,0.00030062726,0.00029922012,0.00045729848,0.00082306017,0.00096514326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009774377,0.00015002121,0.005920179,0.0010510645,0.00012096888,0.0006167171,0.00026937068,0.00067407696,0.95795536,0.0002374931,0.0011674068,0.030860003],"study_design_scores_gemma":[0.00040842584,0.0020591079,0.6074317,0.000633303,0.0017410577,0.009051784,0.0012808295,0.012067756,0.28023294,0.0017657706,0.083118334,0.00020894357],"about_ca_topic_score_codex":0.0024293547,"about_ca_topic_score_gemma":0.0026189326,"teacher_disagreement_score":0.0024293547,"about_ca_system_score_codex":0.00032919788,"about_ca_system_score_gemma":0.0009185292,"threshold_uncertainty_score":0.005097091},"labels":[],"label_agreement":null},{"id":"W3021683580","doi":"10.1186/s12866-020-01804-9","title":"Bifidobacterium mongoliense genome seems particularly adapted to milk oligosaccharide digestion leading to production of antivirulent metabolites","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Oligosaccharide; Bifidobacterium; Bacteriocin; Escherichia coli; Salmonella enterica; Genome; Microbiology; Digestion (alchemy); Virulence; Food science; Beta-galactosidase; Fermentation; Gene; Biochemistry; Lactobacillus; Chemistry; Antimicrobial","score_opus":0.03699506690599314,"score_gpt":0.2741273206100676,"score_spread":0.23713225370407448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021683580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918012,0.0018301938,0.001158921,0.00015475269,0.000018413364,0.0000373948,0.002798493,0.00009520263,0.0021053625],"genre_scores_gemma":[0.9841464,0.0007731053,0.004682224,0.00013701907,0.0000069289276,0.000054023018,0.008073116,0.000033046166,0.0020941417],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998802,0.000012256611,0.000008863764,0.00004540622,0.000023479439,0.000029806852],"domain_scores_gemma":[0.99985313,0.000024557987,0.000046778932,0.000018349368,0.000030652227,0.000026553565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011342835,0.0003570864,0.0002523243,0.00032961747,0.00022910835,0.00042029706,0.00018634494,0.00040199826,0.0009456574],"category_scores_gemma":[0.00016976651,0.00012045915,0.0003169934,0.00039842058,0.00010605878,0.00016306773,0.00029311256,0.00036540255,0.00036998358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010213751,0.000016412221,0.0033833329,0.00010279614,0.0000090169,0.00009676005,0.000059013066,0.000037393584,0.99372685,0.000029995714,0.00005862736,0.002377636],"study_design_scores_gemma":[0.00005857286,0.0011843689,0.45114762,0.00012268683,0.00024104954,0.003953821,0.0010554044,0.001502939,0.50895447,0.00021631106,0.031507853,0.000054981094],"about_ca_topic_score_codex":0.0032742913,"about_ca_topic_score_gemma":0.0034760549,"teacher_disagreement_score":0.0032742913,"about_ca_system_score_codex":0.00025862854,"about_ca_system_score_gemma":0.0002393427,"threshold_uncertainty_score":0.006510496},"labels":[],"label_agreement":null},{"id":"W3033832948","doi":"10.1186/s12866-020-01829-0","title":"Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Hospital for Sick Children; Public Health Ontario; University of British Columbia; SickKids Foundation; University of Toronto; McMaster University; University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"Canadian Institutes of Health Research; Reseau canadien de recherche respiratoire; Children's Hospital Research Institute of Manitoba; Tartu Ülikool; University of Alberta; University of Toronto; Canadian Lung Association; McMaster University; Heart and Stroke Foundation of Canada","keywords":"Biology; Mycobiota; Microbiome; Breastfeeding; Microbiology; Population; Bacteria; Medical microbiology; Environmental health; Ecology; Medicine","score_opus":0.024103588721605618,"score_gpt":0.2775081784626119,"score_spread":0.25340458974100627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033832948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99229515,0.001552673,0.00015842785,0.0002138092,0.00003459935,0.000026602474,0.005057474,0.000008773017,0.0006526657],"genre_scores_gemma":[0.99676716,0.00057596667,0.0002620912,0.000086080225,0.000017813736,0.000051809224,0.0016075072,0.000013617401,0.00061798864],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924135,0.00016782373,0.000058302398,0.0002182535,0.00011588957,0.0001984255],"domain_scores_gemma":[0.99867934,0.00017057521,0.00047496785,0.00020500497,0.00016879999,0.00030126105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010155332,0.00045351675,0.0005368159,0.00051961653,0.000861029,0.0010455517,0.0006750189,0.00083123863,0.0033095807],"category_scores_gemma":[0.002108303,0.00047519684,0.00088269595,0.0014698411,0.00030624046,0.00044199493,0.0011551903,0.0013645751,0.00044915054],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030830642,0.00003676658,0.9973219,0.00004932206,0.00025908326,0.0001168581,0.00018116398,0.00001827914,0.00045575554,0.000043646196,0.00053513906,0.0006737134],"study_design_scores_gemma":[0.000011707003,0.00007090841,0.9988349,0.000022100377,0.0000984019,0.00014838263,0.00022573321,0.000043899945,0.00005545664,0.000015217408,0.00046899435,0.0000043580935],"about_ca_topic_score_codex":0.030789822,"about_ca_topic_score_gemma":0.033859037,"teacher_disagreement_score":0.030789822,"about_ca_system_score_codex":0.0006137623,"about_ca_system_score_gemma":0.00068587984,"threshold_uncertainty_score":0.061221182},"labels":[],"label_agreement":null},{"id":"W3034538893","doi":"10.1186/s12866-020-01826-3","title":"Real-time quantitative PCR assay development and application for assessment of agricultural surface water and various fecal matter for prevalence of Aliarcobacter faecis and Aliarcobacter lanthieri","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Agriculture, Soil, Plant Science","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Resources Canada; Agriculture and Agri-Food Canada; Canadian Food Inspection Agency","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Feces; Agriculture; Parasitology; Veterinary medicine; Surface water; Biotechnology; Ecology; Zoology; Environmental science; Environmental engineering","score_opus":0.023860402292400752,"score_gpt":0.24942151951366315,"score_spread":0.2255611172212624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3034538893","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.27253583,0.002692819,0.7128593,0.00042701978,0.0004600533,0.0019567409,0.0033471729,0.0020830096,0.003637985],"genre_scores_gemma":[0.2782999,0.0016645433,0.70526093,0.00040223065,0.00008784314,0.0047510113,0.003092496,0.00018319367,0.0062578386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9932974,0.001671803,0.00062024174,0.0020135015,0.0020272315,0.00036984196],"domain_scores_gemma":[0.99706453,0.0009398299,0.00058189395,0.00026902414,0.0010519049,0.00009277155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039995257,0.002034942,0.0011174232,0.0015827382,0.00049259607,0.0012902939,0.001193043,0.0016201315,0.0017893958],"category_scores_gemma":[0.004418653,0.0010808851,0.0013682714,0.0011277399,0.001077884,0.0007381925,0.00084404094,0.0016012922,0.0011431751],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015106579,0.00017964673,0.0029128622,0.00027865762,0.000026597163,0.00004741869,0.00018646201,0.0009094725,0.98475677,0.00027522896,0.0002034874,0.010072277],"study_design_scores_gemma":[0.000025768526,0.00080791075,0.004333699,0.00007927642,0.000077341676,0.00023530777,0.00016113979,0.015580976,0.9720714,0.00030533268,0.0062486017,0.00007327705],"about_ca_topic_score_codex":0.00070309517,"about_ca_topic_score_gemma":0.001343062,"teacher_disagreement_score":0.0039995257,"about_ca_system_score_codex":0.0006554389,"about_ca_system_score_gemma":0.0011110298,"threshold_uncertainty_score":0.021151781},"labels":[],"label_agreement":null},{"id":"W3036309876","doi":"10.1186/s12866-020-01852-1","title":"Plant defensin antibacterial mode of action against Pseudomonas species","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Athabasca University; University of Calgary","funders":"Agricultural Research Service; U.S. Department of Agriculture","keywords":"Biology; Pseudomonas syringae; Defensin; Microbiology; Bacterial outer membrane; Transposon mutagenesis; Mutant; Antimicrobial peptides; Transposable element; Antimicrobial; Biochemistry; Escherichia coli; Gene; Pathogen","score_opus":0.03449318375637391,"score_gpt":0.23593640532784413,"score_spread":0.2014432215714702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036309876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99475914,0.0015322083,0.0016777572,0.00009072027,0.000012916097,0.00002877836,0.00039695943,0.000085790714,0.0014156556],"genre_scores_gemma":[0.99397117,0.00064088404,0.0025700585,0.00006282446,0.0000087558865,0.000020932812,0.0006241503,0.000011142722,0.0020900245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993753,0.000008656794,0.0000061327933,0.000014226804,0.000020432293,0.000013123643],"domain_scores_gemma":[0.9999218,0.000012737624,0.000027168311,0.000008731745,0.000015367965,0.000014222428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096948024,0.00033749468,0.00018414311,0.00017030234,0.0000986021,0.00014535205,0.00013109916,0.00022417834,0.0012524846],"category_scores_gemma":[0.00006473854,0.00006310252,0.00015380565,0.000085976055,0.000106341315,0.00011962539,0.0001192459,0.00030042668,0.00030200585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031222356,0.000010601649,0.00011060096,0.000021408403,0.0000015437588,0.000014083048,0.0000026530827,0.000015831565,0.9989422,0.000011606991,0.0000106422385,0.0008277355],"study_design_scores_gemma":[0.000009380646,0.0004736839,0.004396015,0.00000773275,0.000011350571,0.00040458416,0.000012410802,0.0002178919,0.99271625,0.000022493989,0.0017259105,0.000002346121],"about_ca_topic_score_codex":0.00019920876,"about_ca_topic_score_gemma":0.00025262157,"teacher_disagreement_score":0.0012524846,"about_ca_system_score_codex":0.00020304153,"about_ca_system_score_gemma":0.0000937983,"threshold_uncertainty_score":0.0041899085},"labels":[],"label_agreement":null},{"id":"W3040520681","doi":"10.1186/s12866-020-01860-1","title":"Unveiling protist diversity associated with the Pacific oyster Crassostrea gigas using blocking and excluding primers","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Marine Bivalve and Aquaculture Studies","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Nationale de la Recherche; McGill University","keywords":"Biology; Protist; Pacific oyster; Oyster; Crassostrea; Gymnodinium; Ecology; Zoology; Genetics; Gene; Phytoplankton","score_opus":0.03710598818532063,"score_gpt":0.2206788116917187,"score_spread":0.1835728235063981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3040520681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9570719,0.0022076676,0.035604153,0.00013316699,0.000051369254,0.00027187343,0.0024541959,0.00017871725,0.0020270513],"genre_scores_gemma":[0.8012521,0.0015138217,0.18590115,0.000746463,0.00003290634,0.00080094754,0.006715746,0.00018864372,0.0028482005],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982645,0.0003016375,0.00016279481,0.0007664144,0.00032741064,0.00017732658],"domain_scores_gemma":[0.9980135,0.00054750365,0.0006713556,0.00012905254,0.0005319614,0.00010668815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014479533,0.0010379846,0.0006195932,0.0009853321,0.0007159321,0.00083101453,0.00047240523,0.0007573889,0.00096944656],"category_scores_gemma":[0.0024610653,0.0005454276,0.0008255505,0.00090659555,0.00067728944,0.00040011873,0.0005848118,0.00072559086,0.00057113305],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038337643,0.00009296601,0.041668206,0.00046157534,0.000105823994,0.00013592021,0.00071893504,0.00042444907,0.9392134,0.00023078229,0.00016338855,0.016401272],"study_design_scores_gemma":[0.00008775491,0.0018052727,0.26035,0.00038255745,0.0012304675,0.0017320926,0.0017245346,0.009390687,0.7000504,0.0008916597,0.02221961,0.0001349256],"about_ca_topic_score_codex":0.0013697279,"about_ca_topic_score_gemma":0.005525011,"teacher_disagreement_score":0.0014479533,"about_ca_system_score_codex":0.00027747962,"about_ca_system_score_gemma":0.00082545064,"threshold_uncertainty_score":0.007657647},"labels":[],"label_agreement":null},{"id":"W3042696691","doi":"10.1186/s12866-020-01901-9","title":"Examining the relationship between maternal body size, gestational glucose tolerance status, mode of delivery and ethnicity on human milk microbiota at three months post-partum","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Sunnybrook Health Science Centre; Canada Research Chairs; University of Ottawa; Hospital for Sick Children; University of Toronto","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Body mass index; Gestational diabetes; Overweight; Pregnancy; Biology; Gestation; Incidence (geometry); Obesity; Physiology; Obstetrics; Medicine; Endocrinology; Genetics","score_opus":0.055961525479020384,"score_gpt":0.2977788144825576,"score_spread":0.24181728900353722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042696691","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741817,0.0012898307,0.00020646334,0.000097862816,0.0000113708065,0.000009710462,0.00062027853,0.000006228502,0.00034002904],"genre_scores_gemma":[0.99884087,0.00031787774,0.00020079123,0.00004228059,0.0000075884045,0.000017508337,0.00029047707,0.0000033165043,0.0002792047],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994355,0.00020518349,0.000043149877,0.0001257512,0.000072802264,0.00011766392],"domain_scores_gemma":[0.9978269,0.0006688543,0.000958338,0.000118020725,0.00015675936,0.00027108224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010278084,0.0002859977,0.00034419957,0.0003836389,0.00023064148,0.0005227968,0.00041607424,0.00041684997,0.0022838286],"category_scores_gemma":[0.0035823325,0.0001948724,0.0007005429,0.0005635786,0.00019966153,0.00028629834,0.00047031126,0.00054984697,0.0002709825],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006058666,0.00003479224,0.99421656,0.000041031297,0.00013698495,0.000081912585,0.00009135457,0.000047961345,0.0006554782,0.000018661896,0.000111842775,0.0039574374],"study_design_scores_gemma":[0.0000034611523,0.00016933377,0.99908197,0.000016382171,0.000060595117,0.00008995368,0.00010995141,0.00013252355,0.00016147422,0.000019227773,0.00015270863,0.0000023618747],"about_ca_topic_score_codex":0.0043923217,"about_ca_topic_score_gemma":0.0051573496,"teacher_disagreement_score":0.0043923217,"about_ca_system_score_codex":0.00042713626,"about_ca_system_score_gemma":0.00049390434,"threshold_uncertainty_score":0.008733511},"labels":[],"label_agreement":null},{"id":"W3087692983","doi":"10.1186/s12866-020-01949-7","title":"Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba; University of Calgary","funders":"Canadian Institutes of Health Research; University of Alberta; University of Toronto; McMaster University","keywords":"Biology; Operational taxonomic unit; UniFrac; Microbiome; Species richness; Beta diversity; Human microbiome; Amplicon; Alpha diversity; Metagenomics; Microbial ecology; 16S ribosomal RNA; Ecology; Genetics; Gene; Bacteria; Polymerase chain reaction","score_opus":0.1857594622055504,"score_gpt":0.34679019798352795,"score_spread":0.16103073577797755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3087692983","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688862,0.0012301505,0.028243564,0.00030459004,0.00003505681,0.0001604616,0.00024749135,0.00011252787,0.000780013],"genre_scores_gemma":[0.95001125,0.0006453299,0.048128225,0.00015740123,0.000048394773,0.00008165984,0.00031990718,0.000116158924,0.00049172196],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9944728,0.0025294549,0.00023888258,0.0008902548,0.0015924723,0.0002760525],"domain_scores_gemma":[0.9917488,0.00470918,0.0010857552,0.00082778593,0.0014192311,0.00020925236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0065906425,0.0006628566,0.0006691059,0.0005950661,0.0008429813,0.0011322227,0.00067885814,0.0011820828,0.0007504016],"category_scores_gemma":[0.01528717,0.00028103983,0.0008937019,0.0009684883,0.0011992754,0.00042202848,0.0011564526,0.00063022,0.0005202978],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042423294,0.0015231312,0.49719056,0.0019206499,0.00071475183,0.012336057,0.004825059,0.015182015,0.2180601,0.001005569,0.0029453011,0.24005452],"study_design_scores_gemma":[0.00019725757,0.004488714,0.5307142,0.0006342267,0.0009098483,0.026252156,0.005193653,0.07604587,0.33085683,0.0048918817,0.019559612,0.0002558187],"about_ca_topic_score_codex":0.002437514,"about_ca_topic_score_gemma":0.0032143968,"teacher_disagreement_score":0.0065906425,"about_ca_system_score_codex":0.0005208389,"about_ca_system_score_gemma":0.0007652518,"threshold_uncertainty_score":0.034855127},"labels":[],"label_agreement":null},{"id":"W3092826623","doi":"10.1186/s12866-020-02010-3","title":"Combination of modified carbapenem inactivation method (mCIM) and EDTA-CIM (eCIM) for phenotypic detection of carbapenemase-producing Enterobacteriaceae","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Science and Technology, Taiwan; McMaster University","keywords":"Enterobacteriaceae; Carbapenem; Biology; Microbiology; Escherichia coli; Antibiotics; Gene; Genetics","score_opus":0.02061694904035982,"score_gpt":0.25785568618709204,"score_spread":0.23723873714673221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092826623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9637327,0.008703302,0.023790777,0.00024635883,0.00021658024,0.00024840308,0.00032577943,0.0003190213,0.0024171793],"genre_scores_gemma":[0.93089414,0.001726553,0.065924406,0.00015285387,0.000070271046,0.000103793674,0.00046868031,0.000026238695,0.00063305156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99743843,0.00072929927,0.000278231,0.0005607119,0.00087244087,0.0001209577],"domain_scores_gemma":[0.9982969,0.00064072513,0.00039665613,0.00015462394,0.00036878503,0.00014234602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016661992,0.0009211794,0.000791343,0.0016959204,0.00018459068,0.00047922553,0.0005429115,0.0007418759,0.0006674983],"category_scores_gemma":[0.0028010176,0.00035100046,0.000475357,0.0008120582,0.0003948245,0.00036038455,0.0004901955,0.0005929594,0.0002974076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001149346,0.0005060867,0.1745776,0.0008819686,0.0002770982,0.00055732904,0.00020599732,0.0003182514,0.7557203,0.00006809208,0.00036478988,0.06537312],"study_design_scores_gemma":[0.000071555754,0.0051306346,0.27589998,0.0001650201,0.00072218594,0.008296759,0.0003182771,0.0057046805,0.69899917,0.00007645643,0.004491238,0.00012402603],"about_ca_topic_score_codex":0.000486734,"about_ca_topic_score_gemma":0.0010578632,"teacher_disagreement_score":0.0016959204,"about_ca_system_score_codex":0.00020530677,"about_ca_system_score_gemma":0.0002619959,"threshold_uncertainty_score":0.0088118315},"labels":[],"label_agreement":null},{"id":"W3097103685","doi":"10.1186/s12866-020-02017-w","title":"Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Stanford University Center for Innovation in Global Health; National Human Genome Research Institute; Center for Computational, Evolutionary and Human Genomics, Stanford University; Fogarty International Center; DNA Genotek; Wellcome Trust","keywords":"Microbiome; Obesity; Overweight; Population; Environmental health; Biology; Cohort; Nutrition transition; Anthropometry; Epidemiological transition; Demography; Gerontology; Geography; Medicine; Bioinformatics","score_opus":0.0102574730667833,"score_gpt":0.23480633197445797,"score_spread":0.22454885890767468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097103685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99971825,0.000029425368,0.000037821745,0.00001624882,0.0000011859169,0.000008743507,0.00010746398,0.0000010613796,0.0000797596],"genre_scores_gemma":[0.9995407,0.000040079023,0.00010600704,0.000027073807,0.0000025877391,0.000016884112,0.000109620916,0.0000015399534,0.0001555275],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99983335,0.000036566642,0.000009295951,0.000049598715,0.000021685502,0.000049501563],"domain_scores_gemma":[0.9997235,0.000029639315,0.0000827506,0.000028839791,0.00004376507,0.00009159718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027434298,0.00029405244,0.00024505667,0.00066362176,0.00094758335,0.00064602686,0.00020673881,0.0003954502,0.0015700443],"category_scores_gemma":[0.0009249283,0.0002828926,0.00026872434,0.00073897804,0.00033236528,0.00034977475,0.000726193,0.00039838924,0.00020754027],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002582271,0.00006852517,0.9907864,0.000021924177,0.0000321678,0.00029230284,0.0013276613,0.000026725611,0.005649552,0.00002931972,0.00012622087,0.0013809956],"study_design_scores_gemma":[0.000007992619,0.00015944496,0.9972572,0.000007710001,0.000015809896,0.00029538787,0.0017197492,0.000092666814,0.00019086087,0.000026186755,0.00022344667,0.0000035585754],"about_ca_topic_score_codex":0.008630867,"about_ca_topic_score_gemma":0.008611415,"teacher_disagreement_score":0.008630867,"about_ca_system_score_codex":0.00022857031,"about_ca_system_score_gemma":0.00028470598,"threshold_uncertainty_score":0.01716125},"labels":[],"label_agreement":null},{"id":"W3101662713","doi":"10.1186/s12866-020-01991-5","title":"Stool microbiome, pH and short/branched chain fatty acids in infants receiving extensively hydrolyzed formula, amino acid formula, or human milk through two months of age","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Children's Health Research Institute; University of Nebraska-Lincoln; Mead Johnson Nutrition","keywords":"Biology; Infant formula; Feces; Firmicutes; Bacteroidetes; Beta diversity; Bifidobacterium; Animal science; Short-chain fatty acid; Amino acid; Hydrolyzed protein; Food science; Butyrate; Hydrolysis; Lactobacillus; Biochemistry; Microbiology; 16S ribosomal RNA; Ecology; Fermentation","score_opus":0.04534495075457338,"score_gpt":0.31390947033030275,"score_spread":0.26856451957572935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3101662713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99977285,0.00010688377,0.000017988486,0.000004000646,0.0000014909216,0.000009169351,0.000057496,0.0000011033057,0.000028905208],"genre_scores_gemma":[0.9993363,0.00008763724,0.00015668583,0.000020550944,0.0000027939245,0.00003408082,0.00020167152,0.0000013378348,0.00015898973],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99969816,0.00007301625,0.000021822743,0.00008897359,0.000047644982,0.00007041244],"domain_scores_gemma":[0.9995028,0.00007140644,0.00016679463,0.000024217139,0.00006291076,0.00017187522],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005103357,0.0002997155,0.0006385046,0.00022656543,0.0002770596,0.00030835366,0.000183082,0.00039971157,0.00056362833],"category_scores_gemma":[0.0010885416,0.00021096531,0.0003184009,0.00019099028,0.00021276317,0.0002579715,0.00031040533,0.0003948539,0.00010182297],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.07202639,0.0041781394,0.82580715,0.0003038177,0.0004012098,0.0004763296,0.00082410884,0.00016098417,0.073227406,0.000028326647,0.00033508844,0.022231016],"study_design_scores_gemma":[0.00017280188,0.0189433,0.9769671,0.000017943748,0.00015938914,0.00023862332,0.00020985602,0.00015012389,0.0029462709,0.000011097836,0.00017632895,0.0000071721793],"about_ca_topic_score_codex":0.0014530219,"about_ca_topic_score_gemma":0.0016404081,"teacher_disagreement_score":0.0014530219,"about_ca_system_score_codex":0.00035196854,"about_ca_system_score_gemma":0.0002865564,"threshold_uncertainty_score":0.0028891563},"labels":[],"label_agreement":null},{"id":"W3109284855","doi":"10.1186/s12866-020-02037-6","title":"Lower methane emissions were associated with higher abundance of ruminal Prevotella in a cohort of Colombian buffalos","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Universidad de Caldas; University of Alberta","keywords":"Biology; Abundance (ecology); Methane; Methane emissions; Greenhouse gas; Cohort; Veterinary medicine; Ecology; Internal medicine","score_opus":0.024862174097067494,"score_gpt":0.2260227670178695,"score_spread":0.20116059292080202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109284855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991509,0.00018596672,0.000053549324,0.000020059731,0.0000025043894,0.0000056399845,0.00032609896,0.0000025107076,0.0002528735],"genre_scores_gemma":[0.99925214,0.00010530235,0.000074800555,0.0000125590495,0.0000022478257,0.000005916531,0.00024733727,0.000002253548,0.0002974905],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999894,0.000011385518,0.0000053949047,0.000040517043,0.0000146630255,0.00003401899],"domain_scores_gemma":[0.9997689,0.000018127996,0.00008677423,0.000013724401,0.00003745473,0.00007509576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012962948,0.00031854206,0.00032935484,0.00082384085,0.0007160495,0.00070616364,0.00022848598,0.00026292453,0.0028637322],"category_scores_gemma":[0.00037387563,0.00022339528,0.00020714547,0.00050760363,0.0003358121,0.00019866646,0.00032985603,0.00032534616,0.00025533463],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001341496,0.000032569296,0.99612,0.000019115832,0.000022237164,0.000117517084,0.00034581326,0.000008681913,0.001981085,0.000014373887,0.0000681902,0.0011364443],"study_design_scores_gemma":[0.0000017028138,0.00004225751,0.99867094,0.00000835198,0.0000141384535,0.00013250682,0.00077859417,0.0000438742,0.000084398605,0.000008559955,0.00021188243,0.0000027988465],"about_ca_topic_score_codex":0.053800337,"about_ca_topic_score_gemma":0.07031347,"teacher_disagreement_score":0.053800337,"about_ca_system_score_codex":0.0005371597,"about_ca_system_score_gemma":0.00030394233,"threshold_uncertainty_score":0.10697436},"labels":[],"label_agreement":null},{"id":"W3122158039","doi":"10.1186/s12866-021-02091-8","title":"Zinc limitation in Klebsiella pneumoniae profiled by quantitative proteomics influences transcriptional regulation and cation transporter-associated capsule production","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Trace Elements in Health","field":"Nursing","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Scheme for Promotion of Academic and Research Collaboration; Canada Foundation for Innovation; University of Guelph","keywords":"Biology; Operon; Proteome; Klebsiella pneumoniae; Virulence; Microbiology; Zinc; Bacteria; Secretion; Proteomics; Biochemistry; Gene; Escherichia coli; Genetics; Chemistry","score_opus":0.028969237006448656,"score_gpt":0.28748422173203886,"score_spread":0.2585149847255902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122158039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994709,0.0011667327,0.0016511083,0.000071644616,0.000015897545,0.000019341658,0.001879613,0.000052552663,0.0004341487],"genre_scores_gemma":[0.9931606,0.0007506093,0.002412586,0.000061121165,0.000008944959,0.000036962778,0.0021581468,0.00002501375,0.0013859669],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998259,0.000014257484,0.00001655396,0.00005247154,0.000055538192,0.000035304172],"domain_scores_gemma":[0.99983954,0.000032113603,0.000048749705,0.000013770078,0.00004425207,0.00002158332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001548007,0.0003565307,0.000420277,0.00024779476,0.00017094171,0.00045128955,0.00019506777,0.00028206393,0.0005761511],"category_scores_gemma":[0.00020148215,0.00016997902,0.000281551,0.00032122334,0.00018899755,0.0001926444,0.00024233262,0.00030944063,0.0002927746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010979187,0.000009425599,0.0008932203,0.00003420075,0.0000033976355,0.000017418895,0.000014702968,0.000022633014,0.9984518,0.0000050785743,0.000015807233,0.00042241375],"study_design_scores_gemma":[0.000010909764,0.0002742242,0.11206871,0.000016252276,0.00003970714,0.00028926058,0.00021900081,0.0017905043,0.8840438,0.00004953392,0.0011804966,0.000017516046],"about_ca_topic_score_codex":0.0017664641,"about_ca_topic_score_gemma":0.0021084363,"teacher_disagreement_score":0.0017664641,"about_ca_system_score_codex":0.00032971677,"about_ca_system_score_gemma":0.00026343617,"threshold_uncertainty_score":0.003512323},"labels":[],"label_agreement":null},{"id":"W3132491320","doi":"10.1186/s12866-021-02115-3","title":"Straw retention efficiently improves fungal communities and functions in the fallow ecosystem","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Soil Carbon and Nitrogen Dynamics","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Earmarked Fund for China Agriculture Research System","keywords":"Subsoil; Topsoil; Straw; Biology; Agronomy; Microbial population biology; Ecosystem; Firmicutes; Soil water; Botany; Ecology; 16S ribosomal RNA; Bacteria","score_opus":0.021048426549803906,"score_gpt":0.19929412733021828,"score_spread":0.17824570078041438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132491320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980866,0.00049604016,0.00086015766,0.000024888062,0.000006001914,0.000008723602,0.00019182594,0.000038318165,0.00028749125],"genre_scores_gemma":[0.99664414,0.00028164,0.0017873794,0.00006526689,0.000005642367,0.000014695704,0.00045009295,0.00001352714,0.0007377554],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99982977,0.000014030287,0.0000107036385,0.00005558376,0.000034766646,0.000055073157],"domain_scores_gemma":[0.99980766,0.00001472035,0.000053382693,0.000009875125,0.000049011804,0.00006539212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025224398,0.00052179396,0.00042109872,0.0003977906,0.00046584828,0.000562737,0.0002649937,0.00025019987,0.00091510225],"category_scores_gemma":[0.0001732804,0.00012123134,0.0003044011,0.00036593713,0.00021618963,0.0004322984,0.0002836042,0.00038698476,0.00013809926],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028016258,0.00010040613,0.01579705,0.00015262915,0.00003740306,0.00008051372,0.00007430879,0.00017332334,0.9733164,0.000041288884,0.00007221547,0.009874323],"study_design_scores_gemma":[0.000032762284,0.0017293579,0.68665147,0.000046348567,0.0001747206,0.00024310565,0.00062569825,0.0034936457,0.30209774,0.0002897051,0.0045833196,0.0000321711],"about_ca_topic_score_codex":0.005968612,"about_ca_topic_score_gemma":0.013873522,"teacher_disagreement_score":0.005968612,"about_ca_system_score_codex":0.0005675823,"about_ca_system_score_gemma":0.0007224428,"threshold_uncertainty_score":0.011867702},"labels":[],"label_agreement":null},{"id":"W3134427103","doi":"10.1186/s12866-021-02135-z","title":"Activity of ceftolozane/tazobactam against Gram-negative isolates from patients with lower respiratory tract infections – SMART United States 2018–2019","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Cefepime; Microbiology; Meropenem; Pseudomonas aeruginosa; Broth microdilution; Biology; Tazobactam; Klebsiella pneumoniae; Ceftazidime/avibactam; Ceftazidime; Virology; Imipenem; Antibiotics; Escherichia coli; Minimum inhibitory concentration; Antibiotic resistance; Bacteria","score_opus":0.007641792872180498,"score_gpt":0.2215087583584877,"score_spread":0.2138669654863072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134427103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98330355,0.009968479,0.00024683,0.00042150987,0.000064277476,0.000052459447,0.0030863772,0.00003956178,0.002816842],"genre_scores_gemma":[0.9940035,0.0014670836,0.00050638086,0.00017712793,0.000036930767,0.000021727898,0.0035402924,0.0000062489453,0.00024065653],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993812,0.00015433403,0.00014840772,0.000091375914,0.00016563613,0.000059093687],"domain_scores_gemma":[0.998998,0.00011372901,0.0004031194,0.000038541544,0.00035467674,0.00009192436],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072034326,0.00028461806,0.00036159367,0.00060779665,0.00011411901,0.00033678947,0.00019954602,0.00024659114,0.0007602268],"category_scores_gemma":[0.0010881636,0.00012130905,0.00030002452,0.0005707088,0.00014157839,0.00017455748,0.00020791857,0.00028538267,0.00026356807],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005915572,0.0007039133,0.79053307,0.00083602883,0.00040251153,0.0005952066,0.00042455064,0.0008440155,0.06101721,0.00014367301,0.0069346363,0.13164961],"study_design_scores_gemma":[0.00031833962,0.0065196324,0.939865,0.0002621311,0.00034629367,0.0022004556,0.00031853883,0.0013606831,0.029209094,0.00004308615,0.019524625,0.00003207273],"about_ca_topic_score_codex":0.003481005,"about_ca_topic_score_gemma":0.0058432287,"teacher_disagreement_score":0.003481005,"about_ca_system_score_codex":0.0004393979,"about_ca_system_score_gemma":0.0005405165,"threshold_uncertainty_score":0.00692147},"labels":[],"label_agreement":null},{"id":"W3139316222","doi":"10.1186/s12866-021-02158-6","title":"Human cell-dependent, directional, time-dependent changes in the mono- and oligonucleotide compositions of SARS-CoV-2 genomes","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Society for the Promotion of Science; Research Organization of Information and Systems; Core Research for Evolutional Science and Technology; Institute of Genetics; Japan Agency for Medical Research and Development","keywords":"Biology; Genome; Clade; Population; Coronavirus; Host adaptation; Adaptation (eye); Virus; Oligonucleotide; Host (biology); Coronaviridae; Virology; Gene; Genetics; Evolutionary biology; Coronavirus disease 2019 (COVID-19); Phylogenetics; Disease; Infectious disease (medical specialty)","score_opus":0.048961300185384866,"score_gpt":0.3334713145669643,"score_spread":0.28451001438157947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139316222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994414,0.0013017061,0.0020013966,0.000035183668,0.00001861091,0.000026925647,0.00084841624,0.00002727681,0.0013265559],"genre_scores_gemma":[0.9931918,0.0008833271,0.0027828896,0.00006558519,0.000010539082,0.000050715655,0.0017724611,0.000010869275,0.0012317507],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998209,0.000030634055,0.000010578712,0.00006126774,0.000053147596,0.00002346672],"domain_scores_gemma":[0.9998122,0.000046356945,0.00005127201,0.000019032277,0.000050858165,0.000020273243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014786003,0.00013691357,0.00015966373,0.00024853676,0.00011275135,0.00025594077,0.00008266324,0.00019924162,0.001267778],"category_scores_gemma":[0.00033863448,0.00011737868,0.0001566522,0.00028054297,0.0001323493,0.00013237189,0.000107735665,0.00018596403,0.00033000702],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027923245,0.000024670877,0.008346934,0.000049651717,0.000015975465,0.00004906436,0.00007847772,0.0002608525,0.9860178,0.00005980841,0.00007984634,0.0047375723],"study_design_scores_gemma":[0.000016852253,0.0009276826,0.22360289,0.000016720725,0.00007189557,0.00071079476,0.00034783006,0.004601543,0.7630318,0.00018510247,0.0064570517,0.00002989058],"about_ca_topic_score_codex":0.0008101283,"about_ca_topic_score_gemma":0.001049416,"teacher_disagreement_score":0.001267778,"about_ca_system_score_codex":0.00015493996,"about_ca_system_score_gemma":0.00015992353,"threshold_uncertainty_score":0.0042411685},"labels":[],"label_agreement":null},{"id":"W3146802560","doi":"10.1186/s12866-021-02159-5","title":"Azithromycin and the microbiota of cystic fibrosis sputum","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; McMaster University; University of Calgary","funders":"Canadian Institutes of Health Research; Calgary Laboratory Services","keywords":"Azithromycin; Cystic fibrosis; Microbiome; Sputum; Biology; Internal medicine; Medicine; Microbiology; Antibiotics; Bioinformatics; Pathology; Tuberculosis","score_opus":0.01120343787151177,"score_gpt":0.27383790963589383,"score_spread":0.26263447176438204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3146802560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987036,0.000707254,0.00006688455,0.000053835793,0.0000045172633,0.0000091404345,0.0001357668,0.000002151307,0.0003168607],"genre_scores_gemma":[0.99929464,0.00024026391,0.00016986126,0.000030758878,0.000009316434,0.0000062127033,0.0001449764,0.00000105734,0.00010294405],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995763,0.000114992356,0.000048107686,0.000080320024,0.00010713919,0.00007319892],"domain_scores_gemma":[0.9992673,0.00011576786,0.00031672738,0.000029861281,0.0001261693,0.00014421002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030025258,0.00013530128,0.000264472,0.00046630035,0.0004012744,0.00071082346,0.00011713628,0.00034785699,0.0011107113],"category_scores_gemma":[0.0012995215,0.00010190427,0.00017993808,0.0005304415,0.00027275857,0.00023538212,0.00040356154,0.00028858994,0.00020262554],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006086387,0.00006388783,0.9596309,0.00006917692,0.00004382161,0.000352242,0.00037573263,0.000065839886,0.030819707,0.00002507456,0.000106989624,0.007838039],"study_design_scores_gemma":[0.0000055399714,0.0002847863,0.996552,0.000019085153,0.000021419617,0.00072925317,0.00029935883,0.00015362908,0.0015333728,0.00003037028,0.00036797507,0.0000033387098],"about_ca_topic_score_codex":0.0023798915,"about_ca_topic_score_gemma":0.0027433294,"teacher_disagreement_score":0.0023798915,"about_ca_system_score_codex":0.00033019867,"about_ca_system_score_gemma":0.000276941,"threshold_uncertainty_score":0.0047320724},"labels":[],"label_agreement":null},{"id":"W3160040029","doi":"10.1186/s12866-021-02208-z","title":"Phenotypic changes in group B streptococci grown in the presence of the polyols, erythritol, sorbitol and mannitol","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"Taif University","keywords":"Erythritol; Polyol; Mannitol; Microbiology; Bacteria; Streptococcus agalactiae; Biology; Sorbitol; Biochemistry; Chemistry; Streptococcus","score_opus":0.01591580749311288,"score_gpt":0.2519304382219956,"score_spread":0.23601463072888273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160040029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965683,0.0006127608,0.0006559581,0.00006626771,0.000037895505,0.000027831413,0.0005527974,0.000020065609,0.0014580274],"genre_scores_gemma":[0.99203825,0.00065112545,0.0030871583,0.000055419445,0.000015807997,0.000063402935,0.0010196093,0.000015374213,0.00305371],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99978036,0.000052628267,0.00002663718,0.00003496286,0.000065882086,0.00003958246],"domain_scores_gemma":[0.99979144,0.00005312282,0.000053410953,0.000018340279,0.00005131331,0.000032334978],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011810116,0.0003373308,0.00023938721,0.00021239671,0.00012038475,0.00030136705,0.00014510764,0.00024847375,0.0011945389],"category_scores_gemma":[0.00019360744,0.00011154347,0.00027659873,0.00022807026,0.00014526698,0.00017190872,0.00021678969,0.00056057615,0.0003117001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013012855,0.00006610027,0.0006531787,0.000041584364,0.0000043703253,0.000063057014,0.00005856583,0.000017416636,0.9982729,0.000019958334,0.000022817685,0.00064983906],"study_design_scores_gemma":[0.000009799514,0.0015783621,0.033426464,0.00002126778,0.000028379942,0.0003895947,0.000363106,0.0003671496,0.9624492,0.000039261773,0.001314827,0.000012708913],"about_ca_topic_score_codex":0.000795645,"about_ca_topic_score_gemma":0.0006093389,"teacher_disagreement_score":0.0011945389,"about_ca_system_score_codex":0.00012500606,"about_ca_system_score_gemma":0.00014746172,"threshold_uncertainty_score":0.003996134},"labels":[],"label_agreement":null},{"id":"W3175781241","doi":"10.1186/s12866-021-02265-4","title":"A new, reliable, and high-throughput strategy to screen bacteria for antagonistic activity against Staphylococcus aureus","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Université de Montréal; Dairy Farmers of Canada; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Staphylococcus aureus; Microbiology; Bacteria; Biology; Plasmid; Antibiotics; Recombinant DNA; Gene; Genetics","score_opus":0.02220488795218587,"score_gpt":0.23709443423601673,"score_spread":0.21488954628383086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175781241","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35516068,0.0072407317,0.6232691,0.0014551535,0.00034874654,0.0014023077,0.00421481,0.0033623865,0.0035460917],"genre_scores_gemma":[0.48677415,0.0046847207,0.48927703,0.00063920853,0.00014095806,0.0014222654,0.006831665,0.00032040506,0.009909533],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976419,0.00033139516,0.00015449522,0.00039931954,0.0013478745,0.00012501053],"domain_scores_gemma":[0.999151,0.00020419408,0.00018839534,0.00014005307,0.00022880301,0.00008755718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011989846,0.0012350802,0.00113117,0.0015519349,0.00030825488,0.0009536521,0.00084754714,0.0011585243,0.0017861096],"category_scores_gemma":[0.00084310333,0.00049854466,0.00100495,0.0007630276,0.0004953596,0.0007683603,0.0009781151,0.0013819239,0.0016718484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029753623,0.00006875128,0.0002617616,0.00010855808,0.00001728101,0.000027214577,0.0000133290605,0.000105007886,0.9931411,0.000052578976,0.00016771989,0.006006965],"study_design_scores_gemma":[0.00003040249,0.0004920626,0.0024646933,0.000019177061,0.000065132124,0.0005364558,0.000034765002,0.0033451482,0.9876145,0.00011944209,0.005245368,0.00003294339],"about_ca_topic_score_codex":0.0003947423,"about_ca_topic_score_gemma":0.00067308504,"teacher_disagreement_score":0.0017861096,"about_ca_system_score_codex":0.00044115807,"about_ca_system_score_gemma":0.0005307305,"threshold_uncertainty_score":0.0063408613},"labels":[],"label_agreement":null},{"id":"W3187949311","doi":"10.1186/s12866-021-02280-5","title":"Prevalence and mechanisms of antibiotic resistance in Escherichia coli isolated from mastitic dairy cattle in Canada","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Mastitis; Biology; Antibiotic resistance; Microbiology; Broth microdilution; Efflux; Virulence; Antibiotics; Biofilm; Escherichia coli; Dairy cattle; Quorum sensing; Veterinary medicine; Bacteria; Minimum inhibitory concentration; Gene; Medicine; Genetics","score_opus":0.006365342975896592,"score_gpt":0.20259425018620472,"score_spread":0.19622890721030814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3187949311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766916,0.00066006853,0.00012221714,0.00007227589,0.000003809462,0.000025974248,0.00068888447,0.0000059099193,0.0007516163],"genre_scores_gemma":[0.99817514,0.00059314055,0.00025973583,0.000047449557,0.000002953954,0.00000633268,0.00059827016,0.000002051447,0.00031484498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99908936,0.00003715592,0.000042647847,0.00013504596,0.00043753683,0.00025826643],"domain_scores_gemma":[0.9987465,0.00010957707,0.0002231753,0.000021222397,0.0006283154,0.00027125215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040425407,0.00028060502,0.0003112965,0.002128491,0.0014516466,0.001166529,0.00082233583,0.00047659085,0.0008427423],"category_scores_gemma":[0.001099695,0.00025581857,0.00023368954,0.002811181,0.00077746226,0.00016322391,0.00045721128,0.0003706296,0.000101902806],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014079863,0.00004352264,0.9872508,0.00007369526,0.000024805764,0.00042486982,0.0009735334,0.00007018731,0.0051469374,0.00004248198,0.00016773178,0.005640667],"study_design_scores_gemma":[0.000004224668,0.00006276236,0.9964483,0.00002417972,0.000022748303,0.0004911455,0.0014362412,0.0001474552,0.00068409904,0.000010905838,0.0006615776,0.000006399001],"about_ca_topic_score_codex":0.9116293,"about_ca_topic_score_gemma":0.93071884,"teacher_disagreement_score":0.08837068,"about_ca_system_score_codex":0.009487022,"about_ca_system_score_gemma":0.007396514,"threshold_uncertainty_score":0.17778218},"labels":[],"label_agreement":null},{"id":"W3196778730","doi":"10.1186/s12866-021-02301-3","title":"Correction to: Prevalence and mechanisms of antibiotic resistance in Escherichia coli isolated from mastitic dairy cattle in Canada","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Escherichia coli; Antibiotic resistance; Veterinary medicine; Dairy cattle; Parasitology; Microbiology; Antibiotics; Zoology; Animal science; Medicine; Genetics","score_opus":0.005795832362126842,"score_gpt":0.20537255587239073,"score_spread":0.1995767235102639,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196778730","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00046138235,0.0011588321,0.00038253336,0.03450682,0.9604099,0.000023660574,0.0017616868,0.00020949446,0.0010856924],"genre_scores_gemma":[0.055630073,0.015380543,0.005249388,0.09068065,0.5532686,0.00030692804,0.005235335,0.0018579867,0.27239048],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99689627,0.00028800595,0.0005169203,0.00047631987,0.0013088146,0.00051368744],"domain_scores_gemma":[0.9774163,0.0027546908,0.0008811699,0.0009624408,0.016197607,0.0017877255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022693865,0.0018290788,0.0018932266,0.0030120711,0.0023547,0.0028463479,0.0035122891,0.005435812,0.0367334],"category_scores_gemma":[0.029456653,0.00089114753,0.0014825207,0.0021883275,0.0019991135,0.0010556334,0.0015177679,0.0062054987,0.012628747],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000610914,0.000006783131,0.00022793023,0.0001768821,0.00002155091,0.00024783346,0.000042818207,0.000060818707,0.0000845447,0.00020037594,0.9949108,0.0039585303],"study_design_scores_gemma":[0.00008152229,0.00003221105,0.0044933558,0.00035800095,0.00007387851,0.00079320156,0.00022587428,0.00040253412,0.0005056486,0.00052302075,0.99245054,0.000060185626],"about_ca_topic_score_codex":0.2050194,"about_ca_topic_score_gemma":0.18012027,"teacher_disagreement_score":0.7949806,"about_ca_system_score_codex":0.0077161896,"about_ca_system_score_gemma":0.012089782,"threshold_uncertainty_score":0.40765214},"labels":[],"label_agreement":null},{"id":"W3200737923","doi":"10.1186/s12866-021-02306-y","title":"Spatio-temporal dynamics of bacterial communities in the shoreline of Laurentian great Lake Erie and Lake St. Clair’s large freshwater ecosystems","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lake ecosystem; Ecology; Ecosystem; Spatial variability; Abundance (ecology); Biogeochemical cycle; Freshwater ecosystem; Aquatic ecosystem; Relative species abundance; Sampling (signal processing); Temporal scales; Biodiversity; Beta diversity; Biology; Physical geography; Environmental science; Geography","score_opus":0.012790178035093334,"score_gpt":0.21781996051020475,"score_spread":0.20502978247511142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200737923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961084,0.000046815658,0.00002502962,0.000011256458,6.8906826e-7,0.0000012957122,0.00016969557,0.0000020318848,0.00013234647],"genre_scores_gemma":[0.9993529,0.000028739445,0.00011726437,0.000013037764,0.0000017410877,0.000006180196,0.00031703833,0.0000013781704,0.00016167518],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998615,0.000015244268,0.000007220033,0.00004674784,0.000022061193,0.000047133497],"domain_scores_gemma":[0.9996625,0.000038286325,0.00013216576,0.0000106810985,0.00007804758,0.0000783612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024280745,0.00015372795,0.00015011957,0.00064835657,0.0003239676,0.00043036605,0.00016794105,0.00017923942,0.00054002495],"category_scores_gemma":[0.0003670284,0.000096332886,0.00017123374,0.00067880936,0.00025880686,0.00020765707,0.00050920603,0.000121080906,0.000083530045],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019329264,0.000020514519,0.9736381,0.000055147797,0.00006461465,0.0001731559,0.0015667243,0.0003674443,0.017931689,0.00005352484,0.0002786827,0.0056571364],"study_design_scores_gemma":[6.469144e-7,0.000008859174,0.9994405,0.0000022738966,0.0000035717405,0.000011611542,0.00019548096,0.00011768458,0.000089468595,0.0000028896907,0.00012561161,0.0000014398665],"about_ca_topic_score_codex":0.09456391,"about_ca_topic_score_gemma":0.23262566,"teacher_disagreement_score":0.9054361,"about_ca_system_score_codex":0.00095207524,"about_ca_system_score_gemma":0.00066021335,"threshold_uncertainty_score":0.18802696},"labels":[],"label_agreement":null},{"id":"W3202579270","doi":"10.1186/s12866-021-02320-0","title":"Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; Université de Montréal; Ontario Genomics; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Ministère de la Santé et des Services sociaux; Ministère de la Santé; Canadian Institutes of Health Research; Université de Montréal; Institute of Cancer Research; Institut Du Cancer de Montréal","keywords":"Gut flora; Biology; Bacteroides; Antibiotics; Akkermansia; Microbiology; Prevotella; Prebiotic; Feces; Butyrate; Physiology; Food science; Bacteria; Biochemistry; Fermentation","score_opus":0.010512265172016226,"score_gpt":0.2498384552169528,"score_spread":0.23932619004493658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202579270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99681336,0.0013365002,0.0010272462,0.00013191467,0.00003113681,0.000026863683,0.00012821704,0.000067139066,0.00043768858],"genre_scores_gemma":[0.995583,0.000733368,0.0016151808,0.00016916967,0.000020577541,0.00005246723,0.00028211286,0.000020611658,0.0015237065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997758,0.00003915581,0.00002062115,0.000046495923,0.000057247606,0.000060672657],"domain_scores_gemma":[0.99967945,0.000027749264,0.00013113508,0.000029815677,0.00003110569,0.00010077995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017499227,0.00042854188,0.00044212572,0.00030326992,0.00016134091,0.00023240325,0.00017312847,0.0005028927,0.0008251632],"category_scores_gemma":[0.00017957934,0.00014990944,0.00033048086,0.000118161995,0.0003504785,0.0001659989,0.00025158754,0.000724814,0.00018567081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010002813,0.00011808757,0.00088232855,0.000057771795,0.00001427791,0.00009801714,0.000017935858,0.000019354653,0.99559855,0.000016439886,0.000040466253,0.0021364868],"study_design_scores_gemma":[0.000110428664,0.008514969,0.05075314,0.000060767085,0.00012397714,0.00095542765,0.00014528607,0.00077641796,0.93522924,0.000119006596,0.0031941913,0.00001713596],"about_ca_topic_score_codex":0.00035427065,"about_ca_topic_score_gemma":0.00054776896,"teacher_disagreement_score":0.0008251632,"about_ca_system_score_codex":0.00020159436,"about_ca_system_score_gemma":0.0001883756,"threshold_uncertainty_score":0.00276047},"labels":[],"label_agreement":null},{"id":"W4200136572","doi":"10.1186/s12866-021-02372-2","title":"Pheno- and genotypic characterization and identification of novel subtypes of Peste des Petits Ruminants virus in domestic and captive wild goats in Northern Iraq","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; European Commission; CRDF Global","keywords":"Peste-des-Petits-Ruminants; Biology; Outbreak; Peste-des-petits-ruminants virus; Veterinary medicine; Genotype; Herd; Virology; Nucleoprotein; Virus; Diarrhea; Serology; Feces; Antibody; Gene; Immunology; Animal science; Internal medicine; Microbiology; Medicine","score_opus":0.017682072090065094,"score_gpt":0.26352050064300697,"score_spread":0.24583842855294188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200136572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996393,0.00006806838,0.0000595035,0.000007572788,0.0000021138778,0.000009335018,0.00006492907,8.0546783e-7,0.00014842128],"genre_scores_gemma":[0.99940526,0.00006139425,0.00017818292,0.00001996762,0.0000044592935,0.000012679186,0.0002289562,0.0000010334045,0.00008821115],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997731,0.000035377063,0.00001600752,0.00007461343,0.00003898319,0.000061993946],"domain_scores_gemma":[0.99965715,0.000062685685,0.0001307403,0.000023311457,0.00007447525,0.000051614716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000370197,0.00031651565,0.0002117335,0.000736076,0.00048353,0.00044254275,0.00029050047,0.00034105973,0.00029693783],"category_scores_gemma":[0.00049013126,0.00017262422,0.00024169487,0.00035598798,0.0006508884,0.00020102468,0.00018435938,0.00020903311,0.00009226474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036239804,0.00017224555,0.89848286,0.0000736408,0.00007020959,0.0021393702,0.003393182,0.00028250949,0.09024667,0.00008013784,0.00013550765,0.004561312],"study_design_scores_gemma":[0.0000074786176,0.0003198701,0.9947842,0.00000949688,0.00001789591,0.0016471384,0.0015863717,0.00022312181,0.0010578751,0.000018826091,0.0003239692,0.0000037448528],"about_ca_topic_score_codex":0.008012395,"about_ca_topic_score_gemma":0.010216752,"teacher_disagreement_score":0.008012395,"about_ca_system_score_codex":0.0005177744,"about_ca_system_score_gemma":0.00022776973,"threshold_uncertainty_score":0.015931487},"labels":[],"label_agreement":null},{"id":"W4200468018","doi":"10.1186/s12866-021-02410-z","title":"Proteome and secretome profiling of zinc availability in Cryptococcus neoformans identifies Wos2 as a subtle influencer of fungal virulence determinants","year":2021,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Kyungpook National University; Scheme for Promotion of Academic and Research Collaboration; Banting Research Foundation; Natural Sciences and Engineering Research Council of Canada; McMaster University; University of Guelph","keywords":"Cryptococcus neoformans; Biology; Virulence; Proteome; Cryptococcosis; Microbiology; Zinc; Proteomics; Melanin; Fungal protein; Genetics; Gene; Mutant","score_opus":0.019747911763507642,"score_gpt":0.2944348392296243,"score_spread":0.27468692746611667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200468018","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951912,0.0004341378,0.00083078124,0.000083150364,0.000012258646,0.000016480135,0.0029457603,0.000037785983,0.00044844346],"genre_scores_gemma":[0.99223995,0.0004784995,0.0024676977,0.00007853036,0.0000083781215,0.000022925105,0.0034163427,0.000015141447,0.0012725457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999205,0.0000042849706,0.000005185339,0.000024296256,0.000025986055,0.000019709341],"domain_scores_gemma":[0.9999206,0.000009105033,0.000028298942,0.000007325148,0.000013757622,0.000020953674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096499214,0.00033402245,0.00021264268,0.00046132717,0.00017864702,0.00029389915,0.0001421125,0.00029203334,0.0005208044],"category_scores_gemma":[0.00012273846,0.00009116228,0.00025331523,0.00041600308,0.00017819194,0.0001841598,0.00024382773,0.00026231108,0.0001885251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014946493,0.000012724052,0.0019358569,0.000026313104,0.000004778095,0.000085358515,0.000017377375,0.00004379447,0.9967534,0.000019606674,0.000035853456,0.00091545755],"study_design_scores_gemma":[0.00001535123,0.00022465181,0.25274736,0.000021617054,0.00004572762,0.0011562216,0.00024571337,0.0036978421,0.73915285,0.00022904336,0.0024445977,0.00001900946],"about_ca_topic_score_codex":0.0014324016,"about_ca_topic_score_gemma":0.0016717319,"teacher_disagreement_score":0.0014324016,"about_ca_system_score_codex":0.00025856614,"about_ca_system_score_gemma":0.00018926463,"threshold_uncertainty_score":0.0028481483},"labels":[],"label_agreement":null},{"id":"W4220662583","doi":"10.1186/s12866-022-02454-9","title":"A survey of Methylobacterium species and strains reveals widespread production and varying profiles of cytokinin phytohormones","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trent University","funders":"Natural Sciences and Engineering Research Council of Canada; Agricultural Adaptation Council; Grain Farmers of Ontario; Genome Canada; Ontario Genomics; Ontario Genomics Institute","keywords":"Methylobacterium; Biology; Abscisic acid; Cytokinin; Botany; Bacteria; Indole-3-acetic acid; Rhizobacteria; Zeatin; Auxin; Biochemistry; 16S ribosomal RNA; Rhizosphere","score_opus":0.025606657868734017,"score_gpt":0.23553804148626906,"score_spread":0.20993138361753505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220662583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924461,0.001580163,0.0014721738,0.000063173764,0.00001280487,0.000048449016,0.003223042,0.000050870196,0.0011032636],"genre_scores_gemma":[0.9904614,0.0013214314,0.0039388696,0.00006112439,0.00001132924,0.00006467898,0.0029465794,0.000016706128,0.001177744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995191,0.000050901766,0.000062797655,0.00014690225,0.0001328254,0.00008748325],"domain_scores_gemma":[0.99963546,0.000053645595,0.00011519312,0.000031898744,0.00010841504,0.00005535926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003086101,0.0005362802,0.00032609052,0.0013350829,0.00036331877,0.0005479802,0.00024037708,0.0003750585,0.0007819765],"category_scores_gemma":[0.00056476676,0.000173348,0.00031944225,0.0012309356,0.00016750973,0.00031442926,0.0006246081,0.00021281104,0.00035441457],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021237103,0.00006827082,0.062395528,0.0002161365,0.00006605881,0.00020561223,0.00022697488,0.00009169101,0.92305535,0.000042052692,0.000100093544,0.013319835],"study_design_scores_gemma":[0.00001218739,0.0008117005,0.63287055,0.00010986617,0.00022873346,0.002468075,0.001454754,0.00087812624,0.35376176,0.00015539455,0.007198592,0.000050223607],"about_ca_topic_score_codex":0.001482162,"about_ca_topic_score_gemma":0.001583311,"teacher_disagreement_score":0.001482162,"about_ca_system_score_codex":0.00013270744,"about_ca_system_score_gemma":0.00021119959,"threshold_uncertainty_score":0.0029471517},"labels":[],"label_agreement":null},{"id":"W4292263777","doi":"10.1186/s12866-022-02615-w","title":"Fungal diversity in the gut microbiome of young South African children","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"Unitaid; Medical Research Council; National Institute of Allergy and Infectious Diseases; Harry Crossley Foundation; Wellcome Trust","keywords":"Mycobiota; Biology; Microbiome; Species richness; Alpha diversity; Microbial ecology; Internal transcribed spacer; Ecology; Population; Zoology; Bacteria; Ribosomal RNA; Genetics; Environmental health","score_opus":0.01461951384251153,"score_gpt":0.22696650470807678,"score_spread":0.21234699086556524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4292263777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986852,0.00080642686,0.000039068433,0.00003437186,0.0000023369344,0.000011495598,0.00019627268,0.0000012541459,0.00022345441],"genre_scores_gemma":[0.9986681,0.00074017246,0.00025069522,0.000028597855,0.0000044289445,0.000016704382,0.00013616483,0.000001811763,0.00015339501],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99971324,0.000041931016,0.000021301383,0.00007520187,0.00006910336,0.00007915806],"domain_scores_gemma":[0.99964094,0.000059101494,0.00017360097,0.000010294913,0.00004552954,0.00007052385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037230997,0.00038580806,0.000332616,0.0010983439,0.0007662833,0.0008660049,0.00017463107,0.00031005338,0.0018520189],"category_scores_gemma":[0.001073268,0.00026233387,0.00023323257,0.001143807,0.00044779817,0.00046451186,0.0006311396,0.000336297,0.00016934663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002174798,0.000038156613,0.9781042,0.00017784633,0.000039233764,0.00058384455,0.00301913,0.000058672726,0.007468419,0.00006401338,0.00015817618,0.010070815],"study_design_scores_gemma":[0.0000043985196,0.00010453092,0.99630225,0.00005203621,0.000020033602,0.000831219,0.0016479238,0.000037843503,0.0003980483,0.000033290915,0.00056371704,0.0000047925264],"about_ca_topic_score_codex":0.0074000712,"about_ca_topic_score_gemma":0.009454479,"teacher_disagreement_score":0.0074000712,"about_ca_system_score_codex":0.00045005273,"about_ca_system_score_gemma":0.0004580906,"threshold_uncertainty_score":0.014714003},"labels":[],"label_agreement":null},{"id":"W4298145797","doi":"10.1186/s12866-022-02650-7","title":"Choice of DNA extraction method affects detection of bacterial taxa from retail chicken breast","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Health Canada","funders":"Government of Canada","keywords":"Biology; Amplicon; DNA extraction; 16S ribosomal RNA; Metagenomics; Polymerase chain reaction; Amplicon sequencing; DNA; DNA sequencing; Microbiome; Computational biology; Bacteria; Genetics; Gene","score_opus":0.029599442679644327,"score_gpt":0.2575883747348098,"score_spread":0.22798893205516546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4298145797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9544587,0.006699712,0.033538625,0.0006061844,0.0002539544,0.0005585226,0.0011550668,0.00025896323,0.0024702658],"genre_scores_gemma":[0.839865,0.008450042,0.14052217,0.0011449235,0.00010130434,0.0009015089,0.00448573,0.00026904038,0.0042603193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954522,0.0010853031,0.0006032384,0.0011472562,0.0014360884,0.0002759786],"domain_scores_gemma":[0.99535626,0.0024598746,0.0009821714,0.00019998124,0.00087586825,0.0001257972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002218447,0.00097188534,0.00064352766,0.0010789705,0.00039732727,0.0013653961,0.00054394646,0.0011566161,0.0012200286],"category_scores_gemma":[0.0062371553,0.00063140923,0.00051452947,0.0009836667,0.0009610888,0.0006265661,0.0009091356,0.0006663034,0.0011449351],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002089881,0.000044258883,0.0055358815,0.0005297335,0.0000368516,0.00008197926,0.00011117019,0.0001514681,0.9866932,0.00002185012,0.000073812975,0.00651087],"study_design_scores_gemma":[0.000014651082,0.001007336,0.035026576,0.00028537988,0.00014651452,0.00072923064,0.0003419102,0.0010099963,0.9560762,0.00007794005,0.0052392744,0.000044949564],"about_ca_topic_score_codex":0.0009501011,"about_ca_topic_score_gemma":0.0024593347,"teacher_disagreement_score":0.002218447,"about_ca_system_score_codex":0.00035075075,"about_ca_system_score_gemma":0.0004086048,"threshold_uncertainty_score":0.011732399},"labels":[],"label_agreement":null},{"id":"W4308882070","doi":"10.1186/s12866-022-02681-0","title":"Vaginal microbiota in women with spontaneous preterm labor versus those with term labor in Kenya: a case control study","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Bacterial vaginosis; Biology; Gardnerella vaginalis; Lactobacillus; Obstetrics; Full Term; Gestational age; Case-control study; Gestation; Pregnancy; Preterm labor; Vaginal flora; Physiology; Medicine; Internal medicine; Microbiology; Genetics","score_opus":0.01431720566865728,"score_gpt":0.27464444774983054,"score_spread":0.26032724208117325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308882070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999169,0.00032972806,0.000041151656,0.00001858,0.000004154735,0.000044778335,0.00012198764,9.268133e-7,0.00026966832],"genre_scores_gemma":[0.9991559,0.00031581023,0.00011895405,0.000025029325,0.0000074965483,0.000045377004,0.00015555006,0.000001439558,0.000174394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994854,0.00013222691,0.000056803794,0.00014650109,0.00008073909,0.00009822457],"domain_scores_gemma":[0.9994473,0.00013003983,0.00021676043,0.000043585227,0.00006703843,0.00009525865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005791454,0.0005829664,0.0006014279,0.0010989269,0.001395701,0.00073687296,0.000573887,0.00088564376,0.0022609762],"category_scores_gemma":[0.00206374,0.00072131597,0.00033787102,0.0011419539,0.0005699663,0.000524135,0.0005962603,0.00043240553,0.00024128937],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076183205,0.00023887011,0.9947842,0.00007301674,0.00005838905,0.0011062028,0.00061363797,0.000010898398,0.0008698496,0.00003377546,0.000081769096,0.0013674231],"study_design_scores_gemma":[0.00007597559,0.0008942365,0.9938777,0.000062866085,0.000117098,0.002921486,0.0013680708,0.00010414555,0.00014014021,0.00003152155,0.00039552516,0.000011379695],"about_ca_topic_score_codex":0.009125055,"about_ca_topic_score_gemma":0.009360037,"teacher_disagreement_score":0.009125055,"about_ca_system_score_codex":0.00065309624,"about_ca_system_score_gemma":0.0004204742,"threshold_uncertainty_score":0.018143892},"labels":[],"label_agreement":null},{"id":"W4309659658","doi":"10.1186/s12866-022-02688-7","title":"Evaluation of inorganic phosphate solubilizing efficiency and multiple plant growth promoting properties of endophytic bacteria isolated from root nodules Erythrina brucei","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Debre Markos University; Addis Ababa University; Department of Biotechnology, Ministry of Science and Technology, India; Multiple Sclerosis Scientific Research Foundation; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Phosphate solubilizing bacteria; Phosphate; Bacteria; Biology; Phosphorus; Soil water; Nutrient; Phosphorite; Botany; Erythrina; Rhizobacteria; Biochemistry; Chemistry; Ecology","score_opus":0.031284679414778506,"score_gpt":0.20609438427793486,"score_spread":0.17480970486315636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309659658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998588,0.00030587544,0.00038145238,0.00001825601,0.000005759923,0.000022771143,0.00019364074,0.00000644801,0.00047780966],"genre_scores_gemma":[0.99603146,0.00034451298,0.001891302,0.000017098168,0.0000073150236,0.000040039184,0.00072321773,0.000007829888,0.0009371195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996551,0.000075248936,0.000053150143,0.00006774229,0.00010174134,0.000046949095],"domain_scores_gemma":[0.9996736,0.00008110029,0.000060146547,0.00002767571,0.00010282264,0.000054579745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026944908,0.0004586081,0.0003546532,0.00045525903,0.00017903293,0.0003543713,0.00021305303,0.00029877428,0.0004574005],"category_scores_gemma":[0.00037472972,0.00013301859,0.00023286593,0.000363592,0.00013135129,0.0002469019,0.000313022,0.0002907141,0.00020592571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052400785,0.00005043022,0.0015811103,0.0000395368,0.000005173972,0.000036761547,0.000029913015,0.000018999603,0.9972928,0.000007310289,0.0000057465254,0.00087974727],"study_design_scores_gemma":[0.000015647507,0.0023077182,0.064910874,0.000022873497,0.00007492625,0.0005760573,0.00033226324,0.0007117318,0.9301224,0.000029109093,0.00088423264,0.000012238434],"about_ca_topic_score_codex":0.00091482984,"about_ca_topic_score_gemma":0.0009593126,"teacher_disagreement_score":0.00091482984,"about_ca_system_score_codex":0.000105010775,"about_ca_system_score_gemma":0.00015789208,"threshold_uncertainty_score":0.001818955},"labels":[],"label_agreement":null},{"id":"W4309665486","doi":"10.1186/s12866-022-02701-z","title":"Anti-Helicobacter pylori activity of potential probiotic Lactiplantibacillus pentosus SLC13","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Beef Cattle Research Council; Ministry of Science and Technology, Taiwan; Shanghai Educational Development Foundation","keywords":"Lactobacillus rhamnosus; Microbiology; Biology; Helicobacter pylori; Probiotic; Lactobacillus gasseri; Cytotoxic T cell; Cytotoxicity; Immune system; In vitro; Bacteria; Immunology; Biochemistry","score_opus":0.01679358700023066,"score_gpt":0.24308552955336338,"score_spread":0.22629194255313273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309665486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99406487,0.004100707,0.0005323228,0.00011839445,0.000028881903,0.00002519153,0.0003748042,0.000030247575,0.0007245519],"genre_scores_gemma":[0.992603,0.002638952,0.0023568966,0.00013127972,0.000020086449,0.00003880821,0.0011204026,0.000012015495,0.0010785098],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982125,0.000037168425,0.000028350882,0.000025549092,0.000057486886,0.000030226105],"domain_scores_gemma":[0.99985397,0.000014206389,0.00004776784,0.0000071498825,0.00004591016,0.000031011532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014297437,0.00037795235,0.0004193186,0.00018469966,0.0001099211,0.00026153072,0.00018401376,0.0002696732,0.0013393341],"category_scores_gemma":[0.00017244327,0.00007689382,0.00028466855,0.00020513164,0.00011526066,0.00015234444,0.0002678881,0.00023828688,0.00025451503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054677634,0.0001325768,0.0022554826,0.000340704,0.00002209651,0.00015293033,0.000015648315,0.00008103322,0.99059,0.00001847832,0.000078519195,0.005765768],"study_design_scores_gemma":[0.00007179132,0.009592341,0.037286643,0.00011570912,0.000225911,0.0021459148,0.00022998189,0.0007515064,0.9421605,0.000039937127,0.007360871,0.000018888111],"about_ca_topic_score_codex":0.0005071962,"about_ca_topic_score_gemma":0.0007322703,"teacher_disagreement_score":0.0013393341,"about_ca_system_score_codex":0.0001438353,"about_ca_system_score_gemma":0.00021696855,"threshold_uncertainty_score":0.0044805408},"labels":[],"label_agreement":null},{"id":"W4312190459","doi":"10.1186/s12866-022-02725-5","title":"Diversity of bacterial communities in the plasmodia of myxomycetes","year":2022,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Slime Mold and Myxomycetes Research","field":"Engineering","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"Higher Education Discipline Innovation Project; National Natural Science Foundation of China","keywords":"Biology; Phylum; Firmicutes; Proteobacteria; Bacteroidetes; Bacterial phyla; Plasmodium (life cycle); Bacteria; Zoology; 16S ribosomal RNA; Ecology; Microbiology; Botany; Genetics; Parasite hosting","score_opus":0.0300497958863886,"score_gpt":0.21881472462808277,"score_spread":0.18876492874169418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312190459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985996,0.00035069967,0.000327499,0.000021572103,0.000002723306,0.0000144089945,0.0003456718,0.000006483918,0.00033133515],"genre_scores_gemma":[0.9966337,0.00044071017,0.0017524816,0.000023558501,0.000007252955,0.00003710768,0.0007887604,0.00000327612,0.00031321682],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99977463,0.000024328694,0.00002453181,0.00009074196,0.000052361233,0.000033436965],"domain_scores_gemma":[0.9997851,0.00002944286,0.00008437995,0.000009012044,0.000048986734,0.000043008415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000171244,0.00024336159,0.00023196492,0.00076573034,0.00029561,0.00044767675,0.000116997966,0.00024692874,0.00063483056],"category_scores_gemma":[0.00042691783,0.0001398997,0.00018103397,0.0005441733,0.00019341962,0.00039066773,0.00051591516,0.00020711544,0.00014867338],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040197908,0.00010182784,0.22212711,0.0003510912,0.000060953043,0.0002549037,0.00095412554,0.0002368648,0.7589783,0.00014700762,0.00010791833,0.016277889],"study_design_scores_gemma":[0.000024765475,0.0005779853,0.9601164,0.00005341314,0.00006977809,0.0009261228,0.00086210686,0.0011180211,0.033777367,0.0001883229,0.0022691893,0.000016629132],"about_ca_topic_score_codex":0.00057012547,"about_ca_topic_score_gemma":0.0005406175,"teacher_disagreement_score":0.00076573034,"about_ca_system_score_codex":0.000136826,"about_ca_system_score_gemma":0.00017385437,"threshold_uncertainty_score":0.002123654},"labels":[],"label_agreement":null},{"id":"W4317434685","doi":"10.1186/s12866-023-02758-4","title":"Antimicrobial activity of D-amino acid in combination with photo-sonoactivated hypericin nanoparticles against Acinetobacter baumannii","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Photodynamic Therapy Research Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Acinetobacter baumannii; Antimicrobial; Biology; Hypericin; Microbiology; Bacteria; Pharmacology","score_opus":0.023960891569979496,"score_gpt":0.2829379222276469,"score_spread":0.2589770306576674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317434685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98879087,0.0070756725,0.0019244826,0.0001515574,0.0000632899,0.000031009495,0.00009083567,0.000056821016,0.0018154923],"genre_scores_gemma":[0.99541974,0.0017268648,0.0019380617,0.000073900104,0.000015063713,0.000024943867,0.0000642212,0.000007985368,0.00072921976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991834,0.000017348106,0.0000061421283,0.000016674663,0.000026206275,0.00001521906],"domain_scores_gemma":[0.9999368,0.000015906287,0.00001892965,0.0000039797965,0.0000130377575,0.000011292938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012278144,0.00021992759,0.00019890623,0.00016159263,0.00007546638,0.00016291402,0.00015757729,0.00025210693,0.00072074943],"category_scores_gemma":[0.0001424138,0.00009490602,0.00022620885,0.00009399627,0.00015221798,0.00016061043,0.00014781859,0.00030020307,0.00012315642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001967395,0.0000508819,0.00014385808,0.0001508349,0.000011655799,0.00003885456,0.00001605186,0.0003620797,0.99511045,0.000033791694,0.0000963672,0.0037886093],"study_design_scores_gemma":[0.000023193703,0.0015223378,0.0012771083,0.000015772957,0.000033405653,0.00013568389,0.00003365735,0.0017755033,0.9932776,0.000021042177,0.001876637,0.000008060403],"about_ca_topic_score_codex":0.0004962594,"about_ca_topic_score_gemma":0.0006897013,"teacher_disagreement_score":0.00072074943,"about_ca_system_score_codex":0.00014858351,"about_ca_system_score_gemma":0.000119103854,"threshold_uncertainty_score":0.002411127},"labels":[],"label_agreement":null},{"id":"W4317651666","doi":"10.1186/s12866-023-02756-6","title":"Genomic landscape of the emerging XDR Salmonella Typhi for mining druggable targets clpP, hisH, folP and gpmI and screening of novel TCM inhibitors, molecular docking and simulation analyses","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Penn Center for Musculoskeletal Disorders; Directorate for Biological Sciences; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Alliance de recherche numérique du Canada; Universidade Estadual de Campinas; Centro Nacional de Processamento de Alto Desempenho em São Paulo; University of Karachi","keywords":"Druggability; Biology; Salmonella typhi; Computational biology; Docking (animal); Genome; Homology modeling; Gene; Genetics; Biochemistry; Enzyme","score_opus":0.05446994136537289,"score_gpt":0.33832717787135114,"score_spread":0.28385723650597827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317651666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99114424,0.000620398,0.003756015,0.00013813977,0.0000031622646,0.000028812648,0.002695328,0.000119890814,0.0014940624],"genre_scores_gemma":[0.9828833,0.00078281865,0.0077544143,0.00004668581,0.0000028926113,0.000044795856,0.0076638795,0.000020535927,0.00080070505],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9999639,0.0000061017954,0.0000024860922,0.000010896981,0.000007533555,0.000009129051],"domain_scores_gemma":[0.99995124,0.000016162558,0.000012795515,0.000002391843,0.000008255183,0.000009165129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009467201,0.00025247736,0.0003653111,0.0005533284,0.00023292255,0.00033119242,0.00018177288,0.0002512759,0.002058478],"category_scores_gemma":[0.00020504971,0.00012684306,0.00041039818,0.0009477229,0.000082658196,0.00013337802,0.00018512351,0.00018092025,0.00019715702],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021584602,0.0005053301,0.18824665,0.0013348802,0.000369889,0.004121498,0.0007254054,0.27829844,0.44387767,0.0060747736,0.0039681653,0.07031882],"study_design_scores_gemma":[0.00013110673,0.0015959971,0.300959,0.00008403546,0.00041649703,0.0021563116,0.001303089,0.64664567,0.03061083,0.004803776,0.0112097915,0.00008396417],"about_ca_topic_score_codex":0.0031151758,"about_ca_topic_score_gemma":0.0033920358,"teacher_disagreement_score":0.0031151758,"about_ca_system_score_codex":0.000274529,"about_ca_system_score_gemma":0.00030982823,"threshold_uncertainty_score":0.0068863034},"labels":[],"label_agreement":null},{"id":"W4321375290","doi":"10.1186/s12866-023-02785-1","title":"Genomic and phenotypic profiling of Staphylococcus aureus isolates from bovine mastitis for antibiotic resistance and intestinal infectivity","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"Institut sur la Nutrition et les Aliments Fonctionnels; Canada Research Chairs","keywords":"Biology; Microbiology; Mastitis; Staphylococcus aureus; Virulence; Antibiotic resistance; Ampicillin; Tetracycline; Antibiotics; Host adaptation; Amikacin; Virology; Bacteria; Gene; Genetics","score_opus":0.026087885190911635,"score_gpt":0.23617908748933908,"score_spread":0.21009120229842745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321375290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99386287,0.00042442555,0.0005308219,0.000046587535,0.0000070478472,0.00006063645,0.0040340037,0.000017622602,0.0010160875],"genre_scores_gemma":[0.98999804,0.00043981927,0.0019324569,0.000069775655,0.000008485923,0.000032254382,0.0059907017,0.000009420521,0.0015189742],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996964,0.00001712423,0.000020803362,0.000057218385,0.00012874653,0.00007970151],"domain_scores_gemma":[0.9995745,0.000041521445,0.00007656886,0.000016584654,0.00023081059,0.000060024664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015184656,0.00032673622,0.00030134464,0.0010948845,0.00048603595,0.00061703095,0.0002024332,0.00028323964,0.00062665064],"category_scores_gemma":[0.00042565225,0.00010591284,0.00033202703,0.0016738392,0.00021985442,0.00009349298,0.0002296098,0.0001920289,0.00023649247],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038582424,0.000114212206,0.1508038,0.00019412221,0.00005315896,0.00066927215,0.00083903805,0.00024772083,0.83716506,0.000059038055,0.00030956898,0.009159201],"study_design_scores_gemma":[0.0000059117965,0.0002774995,0.9438962,0.000026910526,0.00009070453,0.0011095143,0.0014416819,0.0005756359,0.050009646,0.000020528167,0.002532438,0.000013426954],"about_ca_topic_score_codex":0.15868661,"about_ca_topic_score_gemma":0.19083859,"teacher_disagreement_score":0.15868661,"about_ca_system_score_codex":0.00061449065,"about_ca_system_score_gemma":0.0010684904,"threshold_uncertainty_score":0.3155259},"labels":[],"label_agreement":null},{"id":"W4323363143","doi":"10.1186/s12866-023-02755-7","title":"Core and conditionally rare taxa as indicators of agricultural drainage ditch and stream health and function","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Government of Canada","keywords":"Ditch; Biology; Drainage basin; Ecology; Drainage; Species richness; Community structure; Metagenomics; Surface runoff; Hydrology (agriculture); Environmental science; Geography","score_opus":0.01704360275138969,"score_gpt":0.2443720693341182,"score_spread":0.2273284665827285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323363143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99932814,0.000049982482,0.00023077549,0.0000057237226,7.131685e-7,0.0000052355495,0.00020786647,0.000004240669,0.0001673984],"genre_scores_gemma":[0.9994655,0.000018209133,0.0002493663,0.000005014374,6.5985625e-7,0.0000035046592,0.00014711406,0.0000011018165,0.00010936708],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99975806,0.000028378656,0.000014897961,0.000078167,0.00006404739,0.000056527544],"domain_scores_gemma":[0.99920434,0.00012238548,0.00032775768,0.00003730333,0.0001929482,0.00011520879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032601092,0.00019749058,0.00021515692,0.00057083915,0.0004660515,0.0005821591,0.00018553066,0.00021624056,0.0009026246],"category_scores_gemma":[0.0009310228,0.00008579775,0.00012592752,0.00076797744,0.00056923146,0.00022175822,0.00042706396,0.00020085779,0.00006458531],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010068688,0.000014926841,0.98235345,0.000023656836,0.00002308396,0.000033697648,0.00025100657,0.00025280277,0.013649568,0.000027758082,0.000052235115,0.0032171442],"study_design_scores_gemma":[5.637671e-7,0.000020317693,0.99902546,0.0000018021683,0.0000053618555,0.000018734108,0.00015449569,0.00025265303,0.00042646728,0.000014961195,0.00007773764,0.0000014528233],"about_ca_topic_score_codex":0.09699862,"about_ca_topic_score_gemma":0.24334149,"teacher_disagreement_score":0.09699862,"about_ca_system_score_codex":0.001011776,"about_ca_system_score_gemma":0.00087431277,"threshold_uncertainty_score":0.19286805},"labels":[],"label_agreement":null},{"id":"W4362523753","doi":"10.1186/s12866-023-02836-7","title":"Structural differences in the gut microbiome of bats using terrestrial vs. aquatic feeding resources","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bat Biology and Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Collectivité de Corse; Nemzeti Kutatási, Fejlesztési és Innovaciós Alap; National Research, Development and Innovation Office; Hungarian Scientific Research Fund; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Agence Nationale de la Recherche","keywords":"Biology; Insectivore; Microbiome; Ecology; Zoology; Habitat; Bioinformatics","score_opus":0.07506110020014507,"score_gpt":0.2519963512125144,"score_spread":0.17693525101236934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362523753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997735,0.00039020117,0.00084465544,0.000027734593,0.000003155383,0.000009545231,0.00038834277,0.000008198346,0.00059297594],"genre_scores_gemma":[0.99731773,0.00025848177,0.0014981236,0.000026415702,0.000005338431,0.000023250184,0.0006300987,0.0000059338563,0.00023458307],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997408,0.000057503094,0.000022087199,0.00009808153,0.000037902042,0.000043662603],"domain_scores_gemma":[0.9995579,0.000117886695,0.00017605163,0.000025496465,0.000058925165,0.00006367672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026612013,0.00017496891,0.00025310882,0.00096629985,0.00042653934,0.0005741469,0.000098057695,0.00027958787,0.0009999832],"category_scores_gemma":[0.0009998521,0.0001712197,0.00027169212,0.0006863601,0.00029416068,0.000646037,0.0006107105,0.00024166073,0.00017357194],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043239724,0.00007667414,0.6989842,0.0005408756,0.00037124852,0.0003180177,0.002957755,0.001890531,0.26758072,0.0006184891,0.00029403053,0.02593503],"study_design_scores_gemma":[0.0000030823135,0.0001276734,0.992478,0.000030188488,0.00006354948,0.0002856321,0.0010040423,0.002242248,0.002395282,0.00045677496,0.00090187794,0.000011618006],"about_ca_topic_score_codex":0.0017363499,"about_ca_topic_score_gemma":0.004052992,"teacher_disagreement_score":0.0017363499,"about_ca_system_score_codex":0.0001695958,"about_ca_system_score_gemma":0.00022730719,"threshold_uncertainty_score":0.0034524798},"labels":[],"label_agreement":null},{"id":"W4366422398","doi":"10.1186/s12866-023-02851-8","title":"Multi-factorial examination of amplicon sequencing workflows from sample preparation to bioinformatic analysis","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"U.S. National Library of Medicine","keywords":"Microbiome; Amplicon; Biology; Computational biology; Metagenomics; Workflow; Amplicon sequencing; Microbial ecology; Pyrosequencing; Fidelity; Biotechnology; Bioinformatics; Computer science; Genetics; Polymerase chain reaction; Gene; Bacteria; 16S ribosomal RNA","score_opus":0.03891356289656683,"score_gpt":0.2762844605995402,"score_spread":0.23737089770297337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366422398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9216877,0.0015868292,0.06988204,0.00029614012,0.00019483229,0.0026598831,0.0015053664,0.0011036228,0.0010836136],"genre_scores_gemma":[0.79181015,0.0017552712,0.19365448,0.00043624913,0.00012638856,0.0066898745,0.003041213,0.0007465375,0.0017399315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9879661,0.004993371,0.0020710058,0.002362444,0.0018652272,0.00074192835],"domain_scores_gemma":[0.96709454,0.019226486,0.0041270736,0.0032953282,0.005366228,0.00089037657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018077748,0.0013425363,0.0009839807,0.0011373514,0.0007042022,0.0023690963,0.00083250104,0.00079134223,0.00092233304],"category_scores_gemma":[0.025860751,0.00058468524,0.001486338,0.0010839914,0.0008412364,0.0012285584,0.0015571113,0.00095673685,0.00047151875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011815048,0.0031704716,0.039062925,0.0022032792,0.0009086915,0.00016394952,0.0010441939,0.0109783625,0.82485014,0.0005932897,0.000955942,0.104253836],"study_design_scores_gemma":[0.00031678609,0.021111082,0.105041616,0.00022960527,0.0015153732,0.00038521294,0.00065555895,0.032682404,0.826684,0.001148368,0.009884623,0.00034530676],"about_ca_topic_score_codex":0.0015347792,"about_ca_topic_score_gemma":0.0015576524,"teacher_disagreement_score":0.018077748,"about_ca_system_score_codex":0.00092814164,"about_ca_system_score_gemma":0.0017566326,"threshold_uncertainty_score":0.09560537},"labels":[],"label_agreement":null},{"id":"W4376873122","doi":"10.1186/s12866-023-02888-9","title":"Evaluation of pathotype marker genes in Streptococcus suis isolated from human and clinically healthy swine in Thailand","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Kasetsart University Research and Development Institute; Mahasarakham University; Kasetsart University","keywords":"Streptococcus suis; Biology; Parasitology; Gene; Medical microbiology; Microbiology; Streptococcus; Genetics; Virology; Veterinary medicine; Bacteria; Zoology; Virulence","score_opus":0.0751895495245355,"score_gpt":0.38337742092574234,"score_spread":0.30818787140120685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376873122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994234,0.00009267921,0.00020937115,0.000009402058,0.000001976783,0.000007730242,0.00012091799,0.0000026901096,0.00013194626],"genre_scores_gemma":[0.9987791,0.00010290124,0.00059720944,0.000016912454,0.000004220544,0.000011086615,0.0003757406,0.0000021092108,0.00011078589],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997124,0.00007597797,0.000038225917,0.0000736665,0.000060208567,0.000039471473],"domain_scores_gemma":[0.9992017,0.00024256678,0.00026320483,0.00003303619,0.00013143502,0.0001280189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034859247,0.00032891365,0.00017717101,0.0006981625,0.0002105331,0.0004438901,0.000114136536,0.00028507836,0.0005669711],"category_scores_gemma":[0.00085030025,0.0001317228,0.0001920289,0.0005318766,0.0003223615,0.0001444669,0.00023155833,0.0001897954,0.00013742459],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083170464,0.00012958351,0.8625763,0.00018415473,0.00005630486,0.0015759178,0.00085849944,0.00028955974,0.124677114,0.00003456999,0.000081733604,0.008704631],"study_design_scores_gemma":[0.000030915457,0.002495292,0.93360263,0.00004730094,0.000128823,0.009091204,0.0024507039,0.0015802234,0.049444012,0.0000693723,0.0010403448,0.000019103652],"about_ca_topic_score_codex":0.0014072164,"about_ca_topic_score_gemma":0.0012976015,"teacher_disagreement_score":0.0014072164,"about_ca_system_score_codex":0.00013853029,"about_ca_system_score_gemma":0.00025232357,"threshold_uncertainty_score":0.0027980208},"labels":[],"label_agreement":null},{"id":"W4377098254","doi":"10.1186/s12866-023-02885-y","title":"Vaginal carriage of Haemophilus influenzae in a non-pregnant reproductive-age population","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"NYU Grossman School of Medicine; York University","keywords":"Carriage; Bacterial vaginosis; Biology; Haemophilus influenzae; Haemophilus; Cohort; Population; Obstetrics; Internal medicine; Medicine; Microbiology; Genetics; Bacteria; Pathology; Antibiotics","score_opus":0.023689443403118595,"score_gpt":0.27405766006525867,"score_spread":0.2503682166621401,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377098254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994905,0.00015642779,0.000040591985,0.000020796935,0.000002954672,0.0000062073823,0.00012463247,0.0000017721432,0.00015610529],"genre_scores_gemma":[0.99972993,0.00008320584,0.000031481417,0.000024586641,0.000006187884,0.0000069111857,0.00006766794,5.379786e-7,0.000049476006],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996575,0.0001044589,0.00002550995,0.000095368865,0.00005342479,0.000063794614],"domain_scores_gemma":[0.9994868,0.0001118354,0.00020104297,0.000038387145,0.000055665947,0.00010627543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043210786,0.00022402899,0.00027034507,0.0005579492,0.00041167418,0.0004366036,0.0003182977,0.00039613823,0.0018309862],"category_scores_gemma":[0.0016128608,0.00020625723,0.00021687796,0.0004913927,0.00029923752,0.000313366,0.0003131453,0.00026630034,0.0002464656],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003446414,0.000020466936,0.99867505,0.0000059115237,0.000015766844,0.00012196421,0.00009045287,0.0000055336327,0.00030494906,0.000004493306,0.00004357814,0.0006773134],"study_design_scores_gemma":[0.0000034644977,0.00016108755,0.99871325,0.000006383755,0.000017433826,0.0005883297,0.00031063732,0.000053323038,0.000050525603,0.000008112354,0.00008551159,0.0000019405902],"about_ca_topic_score_codex":0.004529943,"about_ca_topic_score_gemma":0.0035047242,"teacher_disagreement_score":0.004529943,"about_ca_system_score_codex":0.00015991101,"about_ca_system_score_gemma":0.00022360562,"threshold_uncertainty_score":0.009007156},"labels":[],"label_agreement":null},{"id":"W4378227130","doi":"10.1186/s12866-023-02899-6","title":"Functional properties of lactic acid bacteria isolated from Tilapia (Oreochromis niloticus) in Ivory Coast","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie","keywords":"Oreochromis; Biology; Tilapia; Lactic acid; Bacteria; Zoology; Parasitology; Aquatic animal; Fish <Actinopterygii>; Microbiology; Fishery; Veterinary medicine; Genetics","score_opus":0.023850605647366636,"score_gpt":0.20877760437082948,"score_spread":0.18492699872346285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378227130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99923253,0.00019052696,0.00008607983,0.000018758552,0.0000039415763,0.0000083493715,0.00020616442,0.00000206331,0.00025167526],"genre_scores_gemma":[0.9979804,0.0002223774,0.000475406,0.000029171682,0.0000054789857,0.000026051403,0.000694785,0.0000034293319,0.00056293386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979466,0.000024172103,0.000034950594,0.000045973287,0.000055632823,0.00004460846],"domain_scores_gemma":[0.9997602,0.000023630242,0.00008153385,0.0000076015053,0.00007487028,0.000052146494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001826116,0.0004747135,0.00031165523,0.0005668101,0.0002646213,0.0003948268,0.00013900505,0.00025854373,0.0005003177],"category_scores_gemma":[0.00026781863,0.00012131968,0.00026781735,0.0004140271,0.00020978467,0.00021534185,0.00048903364,0.00022621686,0.00014210031],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033671455,0.00007971774,0.02903545,0.00014522462,0.000019018595,0.00019369868,0.00030050692,0.00006183535,0.9670552,0.0000117530635,0.00002763518,0.0027332506],"study_design_scores_gemma":[0.00003295355,0.0032598607,0.6579046,0.000076401855,0.00018901977,0.0016055331,0.0031262015,0.00037676652,0.33146495,0.00007080013,0.0018629644,0.00002987654],"about_ca_topic_score_codex":0.0019185726,"about_ca_topic_score_gemma":0.002393995,"teacher_disagreement_score":0.0019185726,"about_ca_system_score_codex":0.00019443606,"about_ca_system_score_gemma":0.0002768631,"threshold_uncertainty_score":0.0038147569},"labels":[],"label_agreement":null},{"id":"W4387818779","doi":"10.1186/s12866-023-03037-y","title":"Rational probe design for efficient rRNA depletion and improved metatranscriptomic analysis of human microbiomes","year":2023,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"DNA Genotek","keywords":"Microbiome; Biology; Ribosomal RNA; Computational biology; Human microbiome; Human Microbiome Project; Metagenomics; Function (biology); RNA; Transcriptome; Gene; Gene expression; Genetics","score_opus":0.027777795596317344,"score_gpt":0.2820665551058522,"score_spread":0.2542887595095349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387818779","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2123037,0.0011229211,0.7800739,0.00058361754,0.00014883575,0.0010910339,0.0011862832,0.0015503361,0.001939355],"genre_scores_gemma":[0.24095389,0.0011444564,0.75063646,0.0007344884,0.000038951934,0.0022452464,0.0017110558,0.00034580313,0.002189581],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979802,0.00059148576,0.00012310874,0.0005457226,0.0005173565,0.00024217113],"domain_scores_gemma":[0.999037,0.00037200528,0.0001852485,0.00012302645,0.00021479471,0.00006793621],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020844173,0.0011990212,0.0009905287,0.0006633072,0.00040355578,0.000841012,0.0008398087,0.0012969194,0.0009839999],"category_scores_gemma":[0.002651151,0.00077812636,0.00077000767,0.0007308083,0.00075902324,0.0006417148,0.00090279453,0.0018805474,0.00089385436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006144382,0.000025866948,0.00008822942,0.00007332362,0.000006126695,0.000025989297,0.00003315739,0.0005526211,0.9951579,0.00041886498,0.000066800065,0.0034896862],"study_design_scores_gemma":[0.000017953418,0.00016038268,0.0002502994,0.000008542782,0.000010458573,0.000051950286,0.000022240813,0.0035181744,0.99288404,0.00029579966,0.0027630616,0.000017138724],"about_ca_topic_score_codex":0.00033933768,"about_ca_topic_score_gemma":0.0011788635,"teacher_disagreement_score":0.0020844173,"about_ca_system_score_codex":0.0005929783,"about_ca_system_score_gemma":0.0011119399,"threshold_uncertainty_score":0.011023581},"labels":[],"label_agreement":null},{"id":"W4390669409","doi":"10.1186/s12866-023-03119-x","title":"Pathogenicity assessment of Arcobacter butzleri isolated from Canadian agricultural surface water","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Natural Resources Canada; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Biology; Nalidixic acid; Microbiology; Virulence; Clindamycin; Arcobacter; Antibiotic resistance; Tetracycline; Ampicillin; Veterinary medicine; Antibiotics; Campylobacter; Bacteria; Genetics; Gene","score_opus":0.017393556081620715,"score_gpt":0.23137763321664778,"score_spread":0.21398407713502707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390669409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998582,0.00020274046,0.00018586226,0.000028522942,0.0000032909309,0.00004980076,0.00032872328,0.00000881904,0.0006101903],"genre_scores_gemma":[0.99738127,0.00036163145,0.0009078946,0.00002860031,0.0000043214286,0.00002131724,0.0008336177,0.0000027237083,0.00045867014],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999223,0.00003343018,0.000046876863,0.00013243739,0.000365971,0.00019828415],"domain_scores_gemma":[0.99932814,0.00006298735,0.00012545599,0.000021818243,0.00038309596,0.000078571866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033474292,0.0006106162,0.00031726793,0.0013384605,0.0009381925,0.0008143415,0.00041392038,0.0003509854,0.000645056],"category_scores_gemma":[0.00063987315,0.00017467204,0.00023503228,0.0009831851,0.00037989812,0.00024414877,0.00048133006,0.0002675874,0.00020045869],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005043173,0.00031109178,0.54232436,0.0003510009,0.00005453854,0.000908318,0.0019051847,0.0003078358,0.43564165,0.000048376838,0.00022450178,0.017418884],"study_design_scores_gemma":[0.000015969319,0.000499426,0.9578944,0.000028886381,0.00008051429,0.0009653896,0.002041556,0.000441228,0.036424115,0.000019505356,0.0015735914,0.000015461648],"about_ca_topic_score_codex":0.3914233,"about_ca_topic_score_gemma":0.39245883,"teacher_disagreement_score":0.60857666,"about_ca_system_score_codex":0.001866672,"about_ca_system_score_gemma":0.0031596092,"threshold_uncertainty_score":0.77829},"labels":[],"label_agreement":null},{"id":"W4391051453","doi":"10.1186/s12866-023-03148-6","title":"Modeling the limits of detection for antimicrobial resistance genes in agri-food samples: a comparative analysis of bioinformatics tools","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; Carleton University; Canadian Food Inspection Agency","funders":"Government of Canada","keywords":"Biology; Metagenomics; Resistome; Microbiome; Computational biology; Genome; DNA sequencing; GenBank; Gene; Genetics; Biotechnology; Mobile genetic elements","score_opus":0.10591348671238734,"score_gpt":0.3208127350827349,"score_spread":0.21489924837034755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391051453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9122587,0.00053686457,0.0843596,0.0003309104,0.000018402232,0.00008694286,0.00071586785,0.00056724617,0.0011255655],"genre_scores_gemma":[0.9333368,0.00022275,0.06458588,0.000083196865,0.000010118464,0.00015827818,0.001297101,0.00006817297,0.00023782042],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9984394,0.00076703273,0.000091295624,0.00032282522,0.00024450183,0.00013506666],"domain_scores_gemma":[0.9825508,0.015453314,0.00072452024,0.00027125704,0.00083424896,0.00016589723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0056906883,0.0011271986,0.000957944,0.0017697671,0.0005919726,0.0014374446,0.0014408627,0.0014690337,0.0007813411],"category_scores_gemma":[0.013620636,0.00057381974,0.0020773318,0.0012089447,0.00059947756,0.0011411292,0.0007565392,0.000874964,0.00021751497],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046406806,0.00022645402,0.022775516,0.0001871976,0.00017348482,0.00008996746,0.00011549452,0.9591888,0.0031297123,0.0011991481,0.00021812331,0.0122321],"study_design_scores_gemma":[0.0000086926075,0.0000722578,0.0022308452,0.0000075646813,0.000021039814,0.000019598343,0.000033594508,0.99608576,0.00090633496,0.00051192055,0.00009537085,0.000007010827],"about_ca_topic_score_codex":0.008259977,"about_ca_topic_score_gemma":0.0044455696,"teacher_disagreement_score":0.008259977,"about_ca_system_score_codex":0.0020646849,"about_ca_system_score_gemma":0.0014360183,"threshold_uncertainty_score":0.030095637},"labels":[],"label_agreement":null},{"id":"W4396780352","doi":"10.1186/s12866-024-03315-3","title":"Exploring the diversity and evolutionary strategies of prophages in Hyphomicrobiales, comparing animal-associated with non-animal-associated bacteria","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The King's University; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Israel Science Foundation","keywords":"Biology; Prophage; Diversity (politics); Evolutionary biology; Parasitology; Genetics; Zoology; Gene; Bacteriophage; Escherichia coli","score_opus":0.05056685254398991,"score_gpt":0.22188869508129788,"score_spread":0.17132184253730798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396780352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717414,0.0010987251,0.0007790351,0.000014747011,0.0000017251241,0.00000994721,0.00047611087,0.000010401945,0.00043506155],"genre_scores_gemma":[0.99361575,0.00089737825,0.0030336452,0.000022246531,0.000007087677,0.000017045251,0.0021315813,0.000013388031,0.00026193616],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997218,0.000047646747,0.000025779815,0.00009318999,0.000058183592,0.00005336605],"domain_scores_gemma":[0.99941516,0.00021102662,0.0001647337,0.000049725324,0.00007552128,0.00008378136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003187581,0.0003132053,0.0002901686,0.0021390906,0.00032337327,0.0006355134,0.00013761409,0.0002836707,0.0006796317],"category_scores_gemma":[0.00089879404,0.00013198055,0.0003955137,0.0013774341,0.00024430174,0.000528696,0.0005982829,0.00032910937,0.00023983225],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006304541,0.00008906481,0.37152675,0.0006143995,0.00019827829,0.00035309294,0.001240366,0.00070638146,0.58448696,0.00024214167,0.000117237716,0.03979492],"study_design_scores_gemma":[0.000006007621,0.00017236023,0.985421,0.000046397694,0.000070110895,0.0006648156,0.0006736396,0.001272016,0.009943798,0.00016051161,0.0015534621,0.000015832593],"about_ca_topic_score_codex":0.0011942657,"about_ca_topic_score_gemma":0.0014792462,"teacher_disagreement_score":0.0021390906,"about_ca_system_score_codex":0.00014628712,"about_ca_system_score_gemma":0.00022111915,"threshold_uncertainty_score":0.0023745894},"labels":[],"label_agreement":null},{"id":"W4399021425","doi":"10.1186/s12866-024-03336-y","title":"Progression of swine fecal microbiota during early stages of life and its association with performance: a longitudinal study","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Swine Innovation Porc; Wellcome Trust; Cargill","keywords":"Biology; Prevotella; Firmicutes; Weaning; Feces; Gut flora; Bacteroides; Faecalibacterium prausnitzii; Physiology; Animal science; Immunology; Microbiology; Bacteria","score_opus":0.012819819327182274,"score_gpt":0.2752209335221942,"score_spread":0.2624011141950119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399021425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990159,0.00008610346,0.00014362304,0.000017505728,0.000002259768,0.000018607368,0.0005172056,0.0000035841454,0.00019516624],"genre_scores_gemma":[0.9972983,0.00010466686,0.00042379895,0.00003509386,0.0000044431495,0.00004776376,0.0015000695,0.000003027599,0.000582912],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996854,0.000046866902,0.000017539358,0.000095384996,0.00006296097,0.000091970505],"domain_scores_gemma":[0.99907184,0.00006452337,0.00028582077,0.00008895915,0.00029165775,0.00019713276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010128914,0.0002761966,0.00022089238,0.000526518,0.0005638384,0.00046124167,0.00030484513,0.0004126795,0.0006071832],"category_scores_gemma":[0.0007852969,0.00019764563,0.00041228998,0.00052625354,0.0002696462,0.00039053816,0.00037116793,0.00038425415,0.00021708298],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026765256,0.00009393581,0.99511564,0.000011206873,0.000055277334,0.000050805946,0.00021571358,0.000025944288,0.002135196,0.000008252444,0.000108338776,0.0019122093],"study_design_scores_gemma":[0.000002529704,0.00023520838,0.999348,0.0000045005936,0.000011370209,0.00002563328,0.00011392184,0.00004948121,0.00008845814,0.000003368742,0.00011525602,0.0000023325695],"about_ca_topic_score_codex":0.050260015,"about_ca_topic_score_gemma":0.09120981,"teacher_disagreement_score":0.050260015,"about_ca_system_score_codex":0.0010159197,"about_ca_system_score_gemma":0.0010849171,"threshold_uncertainty_score":0.099934936},"labels":[],"label_agreement":null},{"id":"W4399021528","doi":"10.1186/s12866-024-03331-3","title":"Uncovering the lignin-degrading potential of Serratia quinivorans AORB19: insights from genomic analyses and alkaline lignin degradation","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Enzyme-mediated dye degradation","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University; National Research Council Canada","funders":"National Research Council Canada; Lakehead University","keywords":"Lignin; Laccase; Biology; Context (archaeology); Biorefinery; Biochemistry; Strain (injury); Cellulase; Extremophile; Food science; Microbiology; Biotechnology; Enzyme; Botany; Biofuel","score_opus":0.02537308353132705,"score_gpt":0.2473681456224527,"score_spread":0.22199506209112566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399021528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918743,0.001130512,0.003831236,0.0001177098,0.000017106964,0.00004743956,0.002294813,0.00007163891,0.00061524403],"genre_scores_gemma":[0.9808442,0.0014583834,0.011165946,0.00008531787,0.000028119719,0.000043588578,0.0056673777,0.00003820724,0.0006689027],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979967,0.000018260425,0.000021014132,0.000058989914,0.000059090307,0.000042983866],"domain_scores_gemma":[0.99969375,0.000038463004,0.00012092221,0.000024273562,0.00007361275,0.000048921145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003057477,0.00083480024,0.00037617108,0.00071084884,0.0001628109,0.00043785773,0.00028678763,0.00029455443,0.0004585515],"category_scores_gemma":[0.0002776339,0.00013520688,0.0006034318,0.00068458094,0.00017375642,0.000273544,0.00030776096,0.00037957085,0.0002971627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009756641,0.000071367016,0.0061588646,0.00009107208,0.000013601436,0.00018514534,0.00005702962,0.000110008004,0.98946303,0.00003040559,0.00003170794,0.0036902719],"study_design_scores_gemma":[0.00005985335,0.0018672111,0.28107372,0.000081514976,0.00039955834,0.0033644885,0.0012710755,0.0036125465,0.69986016,0.00024417162,0.008112752,0.000052979765],"about_ca_topic_score_codex":0.001097756,"about_ca_topic_score_gemma":0.0011045943,"teacher_disagreement_score":0.001097756,"about_ca_system_score_codex":0.00013972452,"about_ca_system_score_gemma":0.0002200337,"threshold_uncertainty_score":0.002182722},"labels":[],"label_agreement":null},{"id":"W4400424539","doi":"10.1186/s12866-024-03406-1","title":"Genomic characterization of multi drug resistant ESBL-producing Escherichia coli isolates from patients and patient environments in a teaching hospital in Ghana","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Research Foundation; L'Oreal USA","keywords":"Biology; Carriage; Microbiology; Resistome; Escherichia coli; Mobile genetic elements; Phylogenetic tree; Multilocus sequence typing; Carbapenem; Drug resistance; Multiple drug resistance; Virulence; Antibiotic resistance; Plasmid; Genetics; Gene; Integron; Antibiotics; Genotype; Medicine","score_opus":0.004472437620982298,"score_gpt":0.19908823464124722,"score_spread":0.19461579702026494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400424539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925894,0.00013267362,0.00009120594,0.0000485321,0.0000025558293,0.000013449888,0.00034773932,0.0000029047394,0.00010207511],"genre_scores_gemma":[0.9985771,0.00022744472,0.00038141603,0.000061340856,0.000008744611,0.000013265663,0.0005626882,0.000003666543,0.0001644158],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99971706,0.000057616897,0.00003514286,0.00008214558,0.000039536455,0.00006845478],"domain_scores_gemma":[0.9993388,0.00013509436,0.0002842464,0.000029804352,0.00007604278,0.00013603257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001711415,0.0003402579,0.00034238465,0.00081204966,0.0004192049,0.000559232,0.00024964372,0.00040472622,0.0014413759],"category_scores_gemma":[0.0010183676,0.00024206039,0.00022210146,0.0012114668,0.00044292666,0.00022293122,0.00040442962,0.00031111375,0.00023675238],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036710995,0.00012039642,0.9486596,0.00016175606,0.00003242225,0.006781736,0.0038603742,0.00017339598,0.030932732,0.000048382874,0.0003410043,0.008521097],"study_design_scores_gemma":[0.000023627079,0.00026168098,0.9806706,0.00005514088,0.000032796568,0.0077912314,0.006567899,0.00021087183,0.0027942895,0.000037251095,0.001545178,0.000009603611],"about_ca_topic_score_codex":0.007050364,"about_ca_topic_score_gemma":0.0072867107,"teacher_disagreement_score":0.007050364,"about_ca_system_score_codex":0.0004139326,"about_ca_system_score_gemma":0.00038574188,"threshold_uncertainty_score":0.014018655},"labels":[],"label_agreement":null},{"id":"W4402274432","doi":"10.1186/s12866-024-03468-1","title":"Disruption of bacterial interactions and community assembly in Babesia-infected Haemaphysalis longicornis following antibiotic treatment","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Haemaphysalis longicornis; Biology; Tick; Babesiosis; Haemaphysalis; Babesia; Microbiology; Zoology; Transmission (telecommunications); Ixodidae; Virology","score_opus":0.02183503614783633,"score_gpt":0.28424510593187213,"score_spread":0.2624100697840358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402274432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850875,0.00047001973,0.00035577768,0.000029731753,0.000007427815,0.000013360736,0.000348531,0.000010048127,0.0002563718],"genre_scores_gemma":[0.997841,0.000329638,0.00078727194,0.000045687488,0.0000072143953,0.00003621765,0.00065649115,0.0000034122359,0.00029309493],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997024,0.000047300924,0.000024683226,0.00007573414,0.000083953586,0.00006596848],"domain_scores_gemma":[0.9996425,0.000054191285,0.00015515694,0.0000138834175,0.000058655023,0.00007561998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002166182,0.00023475545,0.00030683898,0.00037280255,0.00022739802,0.0003639027,0.00013597187,0.00020691789,0.0005793993],"category_scores_gemma":[0.0004029726,0.000119783246,0.00022603899,0.00026656655,0.00026950252,0.00019860944,0.0002521812,0.00036323463,0.00010450321],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007988135,0.0001352586,0.041225545,0.00024227059,0.00007469669,0.00019018394,0.00023000102,0.0005408546,0.94985354,0.000054491415,0.00013555252,0.0065186755],"study_design_scores_gemma":[0.00002675778,0.002027127,0.81563884,0.00006804298,0.0001603204,0.0006209921,0.000937275,0.0046118037,0.17371182,0.00022413825,0.001941788,0.00003113693],"about_ca_topic_score_codex":0.0022116504,"about_ca_topic_score_gemma":0.0029506458,"teacher_disagreement_score":0.0022116504,"about_ca_system_score_codex":0.00023512416,"about_ca_system_score_gemma":0.00026495205,"threshold_uncertainty_score":0.0043975115},"labels":[],"label_agreement":null},{"id":"W4402324618","doi":"10.1186/s12866-024-03471-6","title":"Survival and virulence of Acinetobacter baumannii in microbial mixtures","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Health Canada","keywords":"Acinetobacter baumannii; Biology; Virulence; Microbiology; Parasitology; Acinetobacter; Medical microbiology; Mycology; Bacteria; Antibiotics; Zoology; Genetics; Gene; Pseudomonas aeruginosa","score_opus":0.009163521695247468,"score_gpt":0.24687824012839057,"score_spread":0.2377147184331431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402324618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859923,0.00039437317,0.0003631236,0.000040718794,0.000013572561,0.000019216355,0.00012347916,0.000011880792,0.00043436277],"genre_scores_gemma":[0.9965797,0.00050623465,0.001628019,0.00004123632,0.000015896458,0.000056741705,0.00034108118,0.000005330326,0.000825659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99960774,0.000089753565,0.000044329612,0.00007427617,0.00011285718,0.00007105429],"domain_scores_gemma":[0.99982363,0.000037131034,0.000056569057,0.000014333799,0.000037551275,0.000030773783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021743763,0.00043967756,0.00031852417,0.0002551864,0.0001642802,0.00037779383,0.0001475651,0.00027090756,0.0006189325],"category_scores_gemma":[0.00022986521,0.0001429129,0.0001928504,0.00018920889,0.00014512216,0.00029233337,0.00034012654,0.00043452156,0.00014699703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018505465,0.00007186898,0.001151782,0.00004709482,0.0000051451248,0.00003352676,0.000032848082,0.0001070814,0.9972295,0.000019294597,0.000019276868,0.0010974671],"study_design_scores_gemma":[0.00002063226,0.004345495,0.026422177,0.000027094537,0.00004047255,0.00029489695,0.0002909009,0.0018006698,0.9655805,0.000074539224,0.0010817788,0.000020911953],"about_ca_topic_score_codex":0.0006262142,"about_ca_topic_score_gemma":0.0007881111,"teacher_disagreement_score":0.0006262142,"about_ca_system_score_codex":0.00015883586,"about_ca_system_score_gemma":0.00021481869,"threshold_uncertainty_score":0.0020705462},"labels":[],"label_agreement":null},{"id":"W4403199343","doi":"10.1186/s12866-024-03534-8","title":"Animal and plant protein intake association with mental health, tryptophan metabolites pathways, and gut microbiota in healthy women: a cross-sectional study","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Tehran University of Medical Sciences and Health Services","keywords":"Biology; Prevotella; Firmicutes; Gut flora; Bacteroidetes; Physiology; Internal medicine; Medicine; Immunology; Bacteria; Genetics","score_opus":0.011886375229194895,"score_gpt":0.266669835103925,"score_spread":0.2547834598747301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403199343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984536,0.00072030566,0.00013410824,0.000030395431,0.000008901826,0.000017014752,0.00036761203,0.000002525539,0.0002655214],"genre_scores_gemma":[0.99871945,0.0002664158,0.00022162076,0.000060689006,0.000012072771,0.000024926701,0.0003164062,0.0000018250639,0.00037672944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998023,0.000058787668,0.000020018806,0.000066038774,0.000025806512,0.000026987358],"domain_scores_gemma":[0.99971026,0.00005840017,0.000087033426,0.000039655966,0.00004763765,0.000056967954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043389862,0.00026535374,0.00039381708,0.00030195087,0.00043999183,0.00048484973,0.00017685066,0.0003871154,0.0016006884],"category_scores_gemma":[0.00071924506,0.00036581766,0.0004631635,0.000521153,0.00013403386,0.00022002973,0.00030313377,0.0004448646,0.00024955973],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037861118,0.00016375621,0.99638355,0.0000533526,0.00029467436,0.00008024779,0.00016604987,0.000015508407,0.00073325523,0.0000196946,0.00012772687,0.00158357],"study_design_scores_gemma":[0.000014388402,0.00030189168,0.9987256,0.000010074165,0.00017468183,0.00015659798,0.00019679024,0.000098407654,0.000053909625,0.000022366847,0.0002423125,0.0000029902913],"about_ca_topic_score_codex":0.002677287,"about_ca_topic_score_gemma":0.00514355,"teacher_disagreement_score":0.002677287,"about_ca_system_score_codex":0.00012373156,"about_ca_system_score_gemma":0.00014437118,"threshold_uncertainty_score":0.0053548217},"labels":[],"label_agreement":null},{"id":"W4403784222","doi":"10.1186/s12866-024-03593-x","title":"Nested patterns of commensals and endosymbionts in microbial communities of mosquito vectors","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; ASL Environmental Sciences (Canada)","funders":"Collectivité de Corse; Lietuvos Mokslo Taryba; Agence Nationale de la Recherche","keywords":"Biology; Commensalism; Parasitology; Vector (molecular biology); Ecology; Zoology; Microbiology; Bacteria; Genetics; Gene","score_opus":0.022594809111053146,"score_gpt":0.22697654759219843,"score_spread":0.20438173848114527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403784222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983103,0.000048362675,0.0012729369,0.00001077028,0.0000011106132,0.000006625172,0.0000821464,0.000012123033,0.00025557127],"genre_scores_gemma":[0.997785,0.00004635835,0.0019080186,0.0000057245056,0.0000010026217,0.0000114095155,0.00016213355,0.0000040027494,0.00007649019],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99990106,0.000019676976,0.000007037003,0.000032478936,0.0000144211845,0.000025337644],"domain_scores_gemma":[0.99978167,0.0000575943,0.00007317537,0.000012971979,0.000032698095,0.000041972176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020737412,0.00018127321,0.00016919912,0.0005385053,0.00028585515,0.0003957021,0.00020494631,0.00021231348,0.0007411636],"category_scores_gemma":[0.00068853097,0.00015335534,0.0003191461,0.0002579432,0.00030646945,0.00037425186,0.00035234189,0.00014603695,0.00007976332],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037567195,0.0002414977,0.6690276,0.00045786795,0.00045047933,0.00074533233,0.0013799779,0.1959485,0.10432241,0.005008133,0.0007602226,0.021282317],"study_design_scores_gemma":[0.000031960808,0.00026656012,0.39399442,0.000033241144,0.000104703744,0.00030239375,0.0007219118,0.59299463,0.006124218,0.004306161,0.0010836404,0.000036200523],"about_ca_topic_score_codex":0.0045085642,"about_ca_topic_score_gemma":0.0046535437,"teacher_disagreement_score":0.0045085642,"about_ca_system_score_codex":0.00036095153,"about_ca_system_score_gemma":0.00030419423,"threshold_uncertainty_score":0.008964598},"labels":[],"label_agreement":null},{"id":"W4403852429","doi":"10.1186/s12866-024-03566-0","title":"Bacterial community dynamics as a result of growth-yield trade-off and multispecies metabolic interactions toward understanding the gut biofilm niche","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Commensalism; Mutualism (biology); Niche; Ecosystem; Ecology; Microbiome; Microbial ecology; Bacteria; Niche differentiation; Microbial population biology; Food web; Bacterial growth; Biofilm; Bioinformatics","score_opus":0.05077735561021348,"score_gpt":0.2973347504844495,"score_spread":0.24655739487423603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403852429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9435683,0.0005172538,0.052097753,0.00040621852,0.000022299906,0.0000294684,0.00012901229,0.000079527126,0.0031501786],"genre_scores_gemma":[0.99435765,0.00020686415,0.0044871015,0.000042182273,0.0000061544206,0.00003759276,0.000036664256,0.000016501841,0.00080941134],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99981385,0.000047631867,0.00000920086,0.00004741306,0.00003401208,0.000048014055],"domain_scores_gemma":[0.99954873,0.00015118936,0.00014262773,0.000028564771,0.000051603995,0.000077316654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039236352,0.000451492,0.00041739893,0.0004992656,0.0004673209,0.0011395089,0.0006471512,0.0010096908,0.0008930524],"category_scores_gemma":[0.001273591,0.00036243853,0.0008398692,0.00025152782,0.0006566484,0.0011075368,0.0010390788,0.00055721926,0.00012671154],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001284775,0.00009801926,0.013440607,0.00011840679,0.00008720709,0.0004921544,0.0003199182,0.8924366,0.06441048,0.023277123,0.0002533693,0.004937641],"study_design_scores_gemma":[0.000004975588,0.000025278534,0.0019166337,0.000005390545,0.000009798977,0.000022407075,0.000043497897,0.9937664,0.0011265723,0.0029019155,0.00016511837,0.000012030577],"about_ca_topic_score_codex":0.0070074275,"about_ca_topic_score_gemma":0.0027706441,"teacher_disagreement_score":0.0070074275,"about_ca_system_score_codex":0.00081778044,"about_ca_system_score_gemma":0.00063200673,"threshold_uncertainty_score":0.013933241},"labels":[],"label_agreement":null},{"id":"W4404100031","doi":"10.1186/s12866-024-03549-1","title":"Integrated control of Fusarium wilt in banana by Bacillus velezensis EB1 and potassium sorbate","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"National Natural Science Foundation of China","keywords":"Biology; Potassium sorbate; Fusarium wilt; Fusarium; Potassium; Biological pest control; Microbiology; Biotechnology; Horticulture; Food science; Fusarium oxysporum","score_opus":0.0059969885052063455,"score_gpt":0.2050379059763643,"score_spread":0.19904091747115793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404100031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937396,0.0015112193,0.0026215124,0.000121076846,0.000042831885,0.000052741125,0.00021887771,0.00012829405,0.0015638757],"genre_scores_gemma":[0.99079764,0.000926681,0.0041290238,0.000070661496,0.0000097933225,0.000057732108,0.0005628398,0.000029514922,0.0034160044],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983704,0.000022438551,0.000014469689,0.000038929506,0.000049059498,0.000038095073],"domain_scores_gemma":[0.99993503,0.000008668777,0.000021508817,0.0000051523675,0.00001148814,0.000018292776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015054057,0.0006126643,0.00045569125,0.00029916794,0.00016082391,0.00035056975,0.00029852317,0.00034308393,0.0008926955],"category_scores_gemma":[0.00009811802,0.00016028945,0.00027740237,0.00015525096,0.00018673805,0.00024624317,0.000408269,0.0005571327,0.00021322926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076011485,0.000030295487,0.00006975711,0.000032851116,0.000002567409,0.000016078768,0.0000061998453,0.00003999401,0.99874073,0.000019654197,0.000008222363,0.00095762307],"study_design_scores_gemma":[0.000027225862,0.00069144106,0.004545403,0.000013378711,0.000030057177,0.00013731547,0.00006568085,0.0011267917,0.9907957,0.00003743103,0.002519284,0.000010241548],"about_ca_topic_score_codex":0.0011443949,"about_ca_topic_score_gemma":0.0023153422,"teacher_disagreement_score":0.0011443949,"about_ca_system_score_codex":0.00031364066,"about_ca_system_score_gemma":0.00026831703,"threshold_uncertainty_score":0.0029863715},"labels":[],"label_agreement":null},{"id":"W4404340224","doi":"10.1186/s12866-024-03622-9","title":"Bacterial community in fresh fruits and vegetables sold in streets and open-air markets of Dakar, Senegal","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"International Development Research Centre; Ministère de l'Enseignement supérieur, de la Recherche et de l'Innovation","keywords":"Open air; Biology; Parasitology; Environmental health; Socioeconomics; Zoology; Medicine; Engineering","score_opus":0.05008005138685782,"score_gpt":0.30909967176017433,"score_spread":0.2590196203733165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404340224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921227,0.00011625603,0.000024614958,0.000023974137,0.0000021526039,0.00001156662,0.00032016955,0.0000015325437,0.00028742707],"genre_scores_gemma":[0.99880004,0.00017985977,0.00015988167,0.000054781463,0.0000027056237,0.00002310909,0.00036270494,0.0000016544983,0.0004152334],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997856,0.000036561265,0.000019769723,0.00007134188,0.000033023956,0.00005375429],"domain_scores_gemma":[0.99979,0.000025745529,0.00007927618,0.00001054222,0.000054206314,0.000040203227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001967981,0.0007189243,0.00026416755,0.0012013402,0.0010936591,0.0009703985,0.0003460287,0.00049256417,0.002082399],"category_scores_gemma":[0.00025042566,0.0003149213,0.00026302808,0.0012711,0.00084374513,0.0004881856,0.00080442126,0.00023250541,0.0003487999],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022993208,0.00014960126,0.95182276,0.00021923393,0.00008487916,0.0023991312,0.005157583,0.00009730098,0.033800535,0.000069853326,0.0002074545,0.0057618036],"study_design_scores_gemma":[0.0000044917765,0.00013860244,0.98622626,0.00002606111,0.000024638844,0.0008240094,0.011067494,0.00006460615,0.001124057,0.00002069473,0.0004679162,0.000011227359],"about_ca_topic_score_codex":0.022094479,"about_ca_topic_score_gemma":0.050964177,"teacher_disagreement_score":0.022094479,"about_ca_system_score_codex":0.0005934326,"about_ca_system_score_gemma":0.0005196413,"threshold_uncertainty_score":0.043931782},"labels":[],"label_agreement":null},{"id":"W4404468850","doi":"10.1186/s12866-024-03629-2","title":"Isolation, characterization and genome analysis of the orphan phage Kintu infecting Xanthomonas vasicola pv. musacearum","year":2024,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Organization for Women in Science for the Developing World; International Development Research Centre","keywords":"Biology; Xanthomonas; Phage therapy; Microbiology; Genome; Plant disease; Antibiotic resistance; Bacteria; Veterinary medicine; Bacteriophage; Gene; Antibiotics; Genetics; Biotechnology; Escherichia coli","score_opus":0.007924350977983703,"score_gpt":0.22447187122679904,"score_spread":0.21654752024881535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404468850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99725276,0.00028547485,0.0013809153,0.000020599851,0.0000040488494,0.000027420472,0.0006712835,0.000014972839,0.00034249743],"genre_scores_gemma":[0.98723537,0.0005273553,0.0049821604,0.000044011686,0.000006835988,0.000042602172,0.0051974766,0.0000203178,0.0019438051],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991953,0.000011002831,0.0000086082555,0.000024691697,0.000019040002,0.000017128412],"domain_scores_gemma":[0.9998099,0.00005193528,0.0000564774,0.000021706655,0.000030081548,0.00002995013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000096562726,0.00020361617,0.00018105554,0.00030559415,0.00013926667,0.00023156275,0.00011281223,0.00020208722,0.00051206944],"category_scores_gemma":[0.00028526326,0.00009166708,0.00025362844,0.00035198583,0.000097714845,0.00018417121,0.0003173369,0.0002719287,0.00024398843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005220371,0.000026915437,0.0036575543,0.00004504179,0.000004192149,0.00008843751,0.00008534364,0.000035734167,0.9936075,0.000012041243,0.000012751376,0.002372378],"study_design_scores_gemma":[0.000016528607,0.001251337,0.5513095,0.000036991038,0.00008459036,0.003458964,0.0011282404,0.0015461494,0.4362437,0.00006335724,0.0048377737,0.000022829174],"about_ca_topic_score_codex":0.0009007753,"about_ca_topic_score_gemma":0.0008896853,"teacher_disagreement_score":0.0009007753,"about_ca_system_score_codex":0.00008771219,"about_ca_system_score_gemma":0.00012333717,"threshold_uncertainty_score":0.0017911196},"labels":[],"label_agreement":null},{"id":"W4406597593","doi":"10.1186/s12866-024-03690-x","title":"Decoding the chicken gastrointestinal microbiome","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Department for the Economy","keywords":"Biology; Feces; Lactobacillus; Zoology; Ileum; Microbiome; Breed; Firmicutes; Bifidobacterium; 16S ribosomal RNA; Microbiology; Ecology; Bacteria; Genetics","score_opus":0.009335705174661596,"score_gpt":0.2656054993017492,"score_spread":0.2562697941270876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406597593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9532608,0.0053962157,0.016555782,0.00041114696,0.00010005445,0.00007946475,0.019291487,0.000428126,0.004476953],"genre_scores_gemma":[0.9027099,0.0034860296,0.047967896,0.0003983888,0.00008688066,0.00015749213,0.042386,0.00020887451,0.0025985918],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994912,0.000109412555,0.000036796126,0.00019380923,0.000096799,0.000071997296],"domain_scores_gemma":[0.9995309,0.00009891377,0.0001235332,0.000055575096,0.00013699423,0.0000539865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006189331,0.0005551933,0.00052619516,0.001666833,0.0003583282,0.0012915424,0.00029225755,0.00061060104,0.001604659],"category_scores_gemma":[0.0016040679,0.00032142247,0.0005923875,0.0014297393,0.0002620446,0.00073638186,0.0010710229,0.00037329478,0.0011799701],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014010094,0.00009469697,0.35555387,0.0031500536,0.00044778053,0.00063955516,0.002087052,0.008121956,0.3964864,0.0010380545,0.007979275,0.2230002],"study_design_scores_gemma":[0.000034849883,0.0006129176,0.8802525,0.0006951605,0.00039843886,0.0010490156,0.0031926113,0.022518776,0.034004886,0.0019469027,0.055193886,0.00010012411],"about_ca_topic_score_codex":0.0045601144,"about_ca_topic_score_gemma":0.008392703,"teacher_disagreement_score":0.0045601144,"about_ca_system_score_codex":0.00033468485,"about_ca_system_score_gemma":0.0005108631,"threshold_uncertainty_score":0.009067118},"labels":[],"label_agreement":null},{"id":"W4408360660","doi":"10.1186/s12866-025-03824-9","title":"Dual role of KHCO₃ priming: reduces seed-borne pathogens on sorghum seeds and promotes seed germination","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Germination; Sorghum; Priming (agriculture); Seed treatment; Sweet sorghum; Agronomy; Botany; Biotechnology","score_opus":0.007148839842046867,"score_gpt":0.22709595349436157,"score_spread":0.2199471136523147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408360660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996992,0.001095829,0.00082056114,0.0000896802,0.000029516643,0.00003392579,0.00028210907,0.00008317747,0.00057326676],"genre_scores_gemma":[0.9967482,0.00040669003,0.0014973923,0.00008030226,0.0000076152933,0.000029195799,0.00019413137,0.000012274266,0.0010241581],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999269,0.000010279902,0.000006529351,0.000022309998,0.000015201479,0.000018617764],"domain_scores_gemma":[0.99990034,0.000009156608,0.000033067932,0.000006883905,0.000016980275,0.000033692366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007971116,0.00034142783,0.00031629665,0.00017832196,0.00018677043,0.00025693025,0.00018790274,0.00023796267,0.0013887679],"category_scores_gemma":[0.00010466997,0.00011716108,0.0002443376,0.00011665864,0.0001526517,0.00015562729,0.00018789755,0.00037672388,0.00022285046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002185163,0.000029283005,0.00058753166,0.000083178486,0.000005531339,0.000032458523,0.00001628156,0.000028572356,0.99722016,0.000016222291,0.00003810634,0.0017240879],"study_design_scores_gemma":[0.00005702704,0.0020254771,0.05149033,0.000022519542,0.00008542129,0.00023278428,0.00012329957,0.0006890352,0.940967,0.00006899673,0.0042178147,0.000020227106],"about_ca_topic_score_codex":0.0011554715,"about_ca_topic_score_gemma":0.0029147507,"teacher_disagreement_score":0.0013887679,"about_ca_system_score_codex":0.00024462433,"about_ca_system_score_gemma":0.0002768465,"threshold_uncertainty_score":0.004645884},"labels":[],"label_agreement":null},{"id":"W4408542596","doi":"10.1186/s12866-025-03865-0","title":"Enable, empower, succeed: a bioinformatics workshop Harnessing open web-based tools for surveillance of bacterial antimicrobial resistance","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Workflow; Genomics; Data science; Biology; Bioinformatics; Computer science; World Wide Web; Genome; Genetics; Database","score_opus":0.025235574435133173,"score_gpt":0.305433283073786,"score_spread":0.2801977086386528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408542596","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.41672114,0.0044800006,0.14156051,0.27555224,0.06766131,0.013005606,0.0068059876,0.0071522985,0.0670609],"genre_scores_gemma":[0.72417784,0.0045269504,0.12814161,0.04748285,0.012446746,0.016045298,0.004718754,0.0023249646,0.060135],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9864981,0.008928911,0.00032877462,0.0010205362,0.0009029399,0.0023206482],"domain_scores_gemma":[0.96275127,0.0118455645,0.0012904897,0.00095502066,0.0031282448,0.020029379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02720737,0.0024487542,0.0005462158,0.00095512567,0.0053565367,0.0062167393,0.0030896964,0.0036005771,0.020464525],"category_scores_gemma":[0.027758427,0.0008155657,0.0015948124,0.00041230948,0.003439895,0.0037501794,0.01505094,0.007380825,0.008042765],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038959181,0.0042499704,0.010877985,0.004415693,0.00016625885,0.007964349,0.14258103,0.0028932104,0.030836903,0.007640556,0.61365974,0.17081834],"study_design_scores_gemma":[0.0005242404,0.0026095328,0.011291957,0.0016221326,0.00010279282,0.001336943,0.07020587,0.0018031991,0.008594693,0.012455715,0.88910687,0.00034606995],"about_ca_topic_score_codex":0.0005855757,"about_ca_topic_score_gemma":0.0012840482,"teacher_disagreement_score":0.02720737,"about_ca_system_score_codex":0.00263,"about_ca_system_score_gemma":0.006626994,"threshold_uncertainty_score":0.14388806},"labels":[],"label_agreement":null},{"id":"W4408679458","doi":"10.1186/s12866-025-03869-w","title":"Profiling bacterial communities in feedlot cattle affected with bovine foot rot and bovine digital dermatitis lesions using 16S rRNA gene sequencing and quantitative real-time PCR","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; 16S ribosomal RNA; Real-time polymerase chain reaction; Veterinary medicine; Medical microbiology; Ribosomal RNA; Microbiology; Parasitology; Foot rot; Feedlot; Gene; Genetics; Animal science; Botany; Zoology","score_opus":0.03600794113517966,"score_gpt":0.2920118478577877,"score_spread":0.2560039067226081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408679458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998432,0.00035869682,0.0005065747,0.000009265206,0.0000040086234,0.000013235343,0.00043975262,0.000007070383,0.0002293947],"genre_scores_gemma":[0.9949014,0.00047747014,0.0030139855,0.000040728075,0.000008637584,0.00003779995,0.0009907546,0.0000053118983,0.00052391645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995003,0.00006595112,0.00003040696,0.0001639345,0.00013911545,0.000100263715],"domain_scores_gemma":[0.9996146,0.0000886685,0.00014115387,0.000010164173,0.00008908179,0.000056258188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036079,0.00042809235,0.00040586753,0.001022509,0.0003962143,0.00073507463,0.00020775806,0.00052200956,0.00035258563],"category_scores_gemma":[0.0003751722,0.00023923116,0.00022486788,0.0007768991,0.00038687358,0.00021314976,0.00018379316,0.00022195515,0.00015540827],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010673645,0.00017620056,0.17607266,0.00030130582,0.000054561227,0.0002948711,0.0011571322,0.00026949905,0.8122711,0.000027117703,0.000055476336,0.008252721],"study_design_scores_gemma":[0.000015788128,0.0013611756,0.9312578,0.000067020854,0.00011407809,0.0007366924,0.0020645028,0.001778798,0.06142821,0.000039888826,0.00111134,0.000024705469],"about_ca_topic_score_codex":0.0046373843,"about_ca_topic_score_gemma":0.008239589,"teacher_disagreement_score":0.0046373843,"about_ca_system_score_codex":0.000387225,"about_ca_system_score_gemma":0.00016798412,"threshold_uncertainty_score":0.009220779},"labels":[],"label_agreement":null},{"id":"W4408784608","doi":"10.1186/s12866-025-03882-z","title":"A one-pot method for universal Dengue virus detection by combining RT-RPA amplification and CRISPR/Cas12a assay","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China; Natural Science Foundation of Shanghai","keywords":"Biology; CRISPR; Dengue virus; Dengue fever; Virology; Parasitology; Computational biology; Genetics; Gene; Zoology","score_opus":0.0151779267267722,"score_gpt":0.3056023812636539,"score_spread":0.2904244545368817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408784608","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13843735,0.0036075704,0.8422948,0.0004695109,0.0004466962,0.001609798,0.0016135115,0.007286092,0.004234615],"genre_scores_gemma":[0.34950462,0.0027687594,0.63639075,0.0005181371,0.000068214606,0.0021515118,0.0023351677,0.0002814466,0.0059814984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967861,0.00036104463,0.00031525022,0.0011355374,0.0011519702,0.0002500105],"domain_scores_gemma":[0.9992124,0.00026089497,0.00017677162,0.00012803198,0.0001609906,0.000060806866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001722613,0.0016945822,0.0013537742,0.0015338982,0.00048101335,0.00074978184,0.0013186472,0.0014349471,0.0014378205],"category_scores_gemma":[0.0015241767,0.0010625558,0.0011111097,0.0006090509,0.000746365,0.0007092522,0.0012251707,0.0019552184,0.0015663763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003866447,0.00008940589,0.000430846,0.00029514654,0.00003227098,0.00011855511,0.000059123897,0.0004163889,0.98201424,0.00034738178,0.0005792767,0.015578641],"study_design_scores_gemma":[0.000017871109,0.0002583109,0.0007835465,0.000020750591,0.000058946694,0.00048010855,0.000027803979,0.0050623803,0.9875529,0.00021221994,0.0054509374,0.000074172094],"about_ca_topic_score_codex":0.0005119777,"about_ca_topic_score_gemma":0.0010493312,"teacher_disagreement_score":0.001722613,"about_ca_system_score_codex":0.00051868404,"about_ca_system_score_gemma":0.0006927321,"threshold_uncertainty_score":0.009110212},"labels":[],"label_agreement":null},{"id":"W4408860177","doi":"10.1186/s12866-025-03916-6","title":"Total darkness activated intestinal clock system and improved intestinal barrier function in growing rabbits","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Diet and metabolism studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Barrier function; Darkness; Function (biology); Parasitology; Microbiology; Cell biology; Zoology; Botany","score_opus":0.01063740558647707,"score_gpt":0.24333738048769174,"score_spread":0.23269997490121466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408860177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818987,0.0008973496,0.0005048114,0.00005910475,0.000018893787,0.000012336363,0.000080463295,0.000011680101,0.00022536142],"genre_scores_gemma":[0.99604046,0.0009173985,0.00093110226,0.00014342596,0.00001856745,0.000075477095,0.00020859837,0.000012408263,0.0016526247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984956,0.000027025591,0.0000137690995,0.00005167371,0.000026862963,0.00003104942],"domain_scores_gemma":[0.9998098,0.000010643257,0.00007687601,0.000020101868,0.000026662161,0.00005586569],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017229862,0.00029109293,0.0003323564,0.00024061304,0.00018441107,0.0002854891,0.00011866061,0.0002255963,0.000664745],"category_scores_gemma":[0.00024150641,0.00017053861,0.0002501479,0.000109411514,0.00028958102,0.00022487003,0.00021059773,0.00045178516,0.00013502495],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031274317,0.00022601004,0.00879748,0.00010255813,0.000036462017,0.00012776876,0.000119775286,0.000034965367,0.98291737,0.000047570902,0.00007418068,0.0043884446],"study_design_scores_gemma":[0.0004514445,0.015587917,0.5464332,0.000067128116,0.0002797357,0.0007515939,0.00085399277,0.0013219836,0.42746505,0.00045369918,0.0062811584,0.00005301168],"about_ca_topic_score_codex":0.00080346095,"about_ca_topic_score_gemma":0.0014837902,"teacher_disagreement_score":0.00080346095,"about_ca_system_score_codex":0.0002568886,"about_ca_system_score_gemma":0.0002047262,"threshold_uncertainty_score":0.0022237897},"labels":[],"label_agreement":null},{"id":"W4408988955","doi":"10.1186/s12866-025-03923-7","title":"Comparison of ciprofloxacin and aminoglycoside susceptibility testing for ceftriaxone non-susceptible Enterobacterales by disk diffusion and VITEK 2 vs. broth microdilution using updated Clinical and Laboratory Standards Institute breakpoints","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotics Pharmacokinetics and Efficacy","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; McGill University Health Centre","funders":"","keywords":"Broth microdilution; Ceftriaxone; Biology; Microbiology; Ciprofloxacin; Antibiotics; Minimum inhibitory concentration","score_opus":0.043508000574409934,"score_gpt":0.3954722084792624,"score_spread":0.35196420790485244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408988955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971751,0.0010372143,0.0008441947,0.00005172683,0.00003541202,0.00004897832,0.00025093422,0.000028243967,0.00052816194],"genre_scores_gemma":[0.9963342,0.00050997414,0.0019243561,0.000043562406,0.000024473773,0.00003997164,0.0008687151,0.000010695216,0.00024404984],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9902271,0.0029372182,0.0016741664,0.0011293669,0.0037037206,0.0003283047],"domain_scores_gemma":[0.97885644,0.008785083,0.004719775,0.0009444002,0.0060691833,0.00062500976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0072936234,0.0007259422,0.00073528057,0.00213324,0.00013954929,0.00089229376,0.0010257337,0.0008029776,0.000574235],"category_scores_gemma":[0.02179659,0.0003969623,0.0006178651,0.0012915098,0.00044341624,0.0011533035,0.00057493,0.0005094451,0.00027353957],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.027369631,0.0021163942,0.7984935,0.00129604,0.00095104816,0.00052105414,0.0017928848,0.0034008522,0.073106766,0.0002242071,0.0010779907,0.08964969],"study_design_scores_gemma":[0.00034160406,0.015946485,0.9498796,0.00010574662,0.000375748,0.0009679322,0.00044274377,0.006069044,0.024455026,0.000058182974,0.0012843542,0.0000736523],"about_ca_topic_score_codex":0.0023694197,"about_ca_topic_score_gemma":0.0025914365,"teacher_disagreement_score":0.0072936234,"about_ca_system_score_codex":0.00084711035,"about_ca_system_score_gemma":0.0003985349,"threshold_uncertainty_score":0.038572848},"labels":[],"label_agreement":null},{"id":"W4408990685","doi":"10.1186/s12866-025-03873-0","title":"Luteolin loaded PEGylated cerosomes: a novel treatment for MRSA skin infections","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Advancements in Transdermal Drug Delivery","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Cairo University","keywords":"Luteolin; Staphylococcus aureus; Antimicrobial; Microbiology; Biology; Stratum corneum; Flavonoid; Biochemistry; Bacteria","score_opus":0.11942912489980538,"score_gpt":0.4445056237952161,"score_spread":0.3250764988954107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408990685","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97561103,0.016253492,0.005933773,0.0002999764,0.00010964192,0.00014182524,0.00014006361,0.00013677467,0.0013733705],"genre_scores_gemma":[0.98933744,0.0049228617,0.004017886,0.000124476,0.000025446838,0.000044618704,0.00011881742,0.000012887064,0.0013956038],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999666,0.000005854277,0.0000030371386,0.000008438306,0.0000072060843,0.000008939528],"domain_scores_gemma":[0.9999809,0.000001948377,0.000006770277,0.0000012252591,0.000003708331,0.0000053894696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006789775,0.00020366278,0.0002990379,0.00020014663,0.00008664999,0.00019783399,0.00022075743,0.0003453982,0.0005278569],"category_scores_gemma":[0.000052624568,0.00008950796,0.00023716717,0.00008506716,0.00011368661,0.00020551497,0.0001682536,0.00026151625,0.00014523581],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010656851,0.00029678925,0.00015691791,0.00037435043,0.00002901015,0.0002612772,0.00002228226,0.00021188677,0.9711076,0.0001009815,0.0002518443,0.02612131],"study_design_scores_gemma":[0.0006397594,0.010152511,0.0052087572,0.00007815531,0.00024204633,0.0021887105,0.0000632612,0.0033581515,0.96105564,0.00009850987,0.016876375,0.000038115326],"about_ca_topic_score_codex":0.00034043388,"about_ca_topic_score_gemma":0.00057991454,"teacher_disagreement_score":0.0005278569,"about_ca_system_score_codex":0.00014938205,"about_ca_system_score_gemma":0.000112327994,"threshold_uncertainty_score":0.0017658472},"labels":[],"label_agreement":null},{"id":"W4409270843","doi":"10.1186/s12866-025-03913-9","title":"In silico genomic insights into bacteriophages infecting ESBL-producing Escherichia coli from human, animal, and environmental sources","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Windsor","funders":"Noguchi Memorial Institute for Medical Research, University of Ghana; University of Ghana","keywords":"Biology; In silico; Escherichia coli; Parasitology; Microbiology; Metagenomics; Human pathogen; Virology; Computational biology; Bacteria; Genetics; Gene; Zoology","score_opus":0.006681854378154183,"score_gpt":0.22747282966956492,"score_spread":0.22079097529141073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409270843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899603,0.00023849518,0.0066750245,0.00006517217,0.000009426642,0.000039436556,0.0022541145,0.000111868,0.0006461769],"genre_scores_gemma":[0.97218835,0.00027431204,0.01796159,0.00005360077,0.000010124897,0.00006448411,0.009054033,0.000032548884,0.00036091593],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9997626,0.000070320944,0.000018773517,0.00008023937,0.000031704083,0.00003626854],"domain_scores_gemma":[0.99935406,0.00046838238,0.00007492042,0.000022418348,0.000040362454,0.00003984416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005617967,0.0005152438,0.0004545795,0.0011854504,0.00044779087,0.0008439493,0.00037083635,0.00044552243,0.0017307822],"category_scores_gemma":[0.0014935369,0.00027068116,0.0011687641,0.0007726891,0.00019960233,0.00025254453,0.0004197137,0.0002810712,0.00032452744],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020839446,0.0007116932,0.6287273,0.0009382711,0.0008163619,0.0024109555,0.00061567314,0.2612024,0.07174202,0.0014350496,0.0008947459,0.028421642],"study_design_scores_gemma":[0.00014975976,0.000748661,0.15827645,0.000165157,0.0005825565,0.0012394333,0.0011960113,0.8176849,0.013549172,0.0024349676,0.0039181006,0.000054875345],"about_ca_topic_score_codex":0.002920252,"about_ca_topic_score_gemma":0.003953238,"teacher_disagreement_score":0.002920252,"about_ca_system_score_codex":0.00030011634,"about_ca_system_score_gemma":0.0007751498,"threshold_uncertainty_score":0.0058065653},"labels":[],"label_agreement":null},{"id":"W4409559320","doi":"10.1186/s12866-025-03947-z","title":"Molecular serotyping and antimicrobial susceptibility profiles of Pasteurella multocida isolated from cases of hemorrhagic septicemia in cattle from selected districts of Keffa and Bench Sheko zones, South West Ethiopia","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"International Development Research Centre","keywords":"Pasteurella multocida; Biology; Serotype; Antimicrobial; Parasitology; Veterinary medicine; Microbiology; Medical microbiology; Bacteria; Medicine; Zoology","score_opus":0.011161114733496473,"score_gpt":0.2528127244323425,"score_spread":0.241651609698846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409559320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99967945,0.00005438366,0.000032477248,0.000008711291,0.000002969727,0.000005506464,0.00008920123,6.5245695e-7,0.00012672321],"genre_scores_gemma":[0.9994912,0.00008651119,0.0001024959,0.000015123092,0.0000038297194,0.0000048680627,0.00016801289,4.555881e-7,0.0001275205],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997718,0.00003512783,0.000028220835,0.000046050558,0.00004963588,0.000069225876],"domain_scores_gemma":[0.9996947,0.000074053736,0.000089145695,0.000008857271,0.0000599674,0.00007327382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024932687,0.00041038485,0.00023724,0.00093070447,0.0005369994,0.00054692535,0.00021288838,0.00033879446,0.00042271454],"category_scores_gemma":[0.00052989175,0.00024398888,0.0001809425,0.0006548994,0.00043585716,0.00018975849,0.00021050738,0.00023456974,0.00009923606],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031797183,0.00016864375,0.94579023,0.00009697546,0.000047431255,0.004298955,0.0026053777,0.0001838203,0.04325748,0.00005108523,0.00011921624,0.0030628464],"study_design_scores_gemma":[0.000009803988,0.00041830246,0.989375,0.000022152239,0.000028813321,0.0026569925,0.003625726,0.00016019873,0.003328464,0.000019504661,0.00034760908,0.0000075495873],"about_ca_topic_score_codex":0.0070400764,"about_ca_topic_score_gemma":0.008235588,"teacher_disagreement_score":0.0070400764,"about_ca_system_score_codex":0.00038015482,"about_ca_system_score_gemma":0.00031036953,"threshold_uncertainty_score":0.01399821},"labels":[],"label_agreement":null},{"id":"W4409996787","doi":"10.1186/s12866-025-03990-w","title":"Identification of genetic determinants of antibiotic resistance in Helicobacter pylori isolates in Vietnam by high-throughput sequencing","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Science and Technology Research Partnership for Sustainable Development; Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; National Institute of Diabetes and Digestive and Kidney Diseases; Japan International Cooperation Agency; National Institutes of Health; Japan Agency for Medical Research and Development","keywords":"Biology; Helicobacter pylori; Antibiotic resistance; Identification (biology); Parasitology; DNA sequencing; Antibiotics; Microbiology; Genetics; Computational biology; Gene; Zoology","score_opus":0.011887881985463611,"score_gpt":0.26327740063499866,"score_spread":0.25138951864953507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409996787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941129,0.001022301,0.002150739,0.00011546655,0.000013658892,0.000040806746,0.0018945283,0.000019376188,0.0006302811],"genre_scores_gemma":[0.98858273,0.00079354463,0.004999819,0.000143362,0.000014615465,0.000059814465,0.004608523,0.000022381791,0.0007752317],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99946266,0.00011164535,0.00006314794,0.00014303728,0.00014036892,0.00007918336],"domain_scores_gemma":[0.99921894,0.0001917398,0.00021362414,0.00005790965,0.0002232947,0.000094511066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007679833,0.00023035074,0.00040473993,0.00090939127,0.00036571987,0.00057840144,0.00027415965,0.0002866045,0.0006139954],"category_scores_gemma":[0.0011908351,0.00023716176,0.00051474705,0.001058011,0.00016071,0.00019681742,0.00033597558,0.00026112905,0.00016935504],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004742768,0.00021764448,0.7800013,0.00060802797,0.00053037424,0.001804731,0.0027184063,0.0018075679,0.16189711,0.0003159734,0.0012551514,0.04836948],"study_design_scores_gemma":[0.000039675982,0.000283996,0.9684759,0.00012738182,0.00038960288,0.0018282059,0.00227031,0.007242813,0.010489356,0.00021811432,0.008596125,0.000038465336],"about_ca_topic_score_codex":0.008813745,"about_ca_topic_score_gemma":0.014229367,"teacher_disagreement_score":0.008813745,"about_ca_system_score_codex":0.0004446912,"about_ca_system_score_gemma":0.000672324,"threshold_uncertainty_score":0.017524898},"labels":[],"label_agreement":null},{"id":"W4410382438","doi":"10.1186/s12866-025-04023-2","title":"Effects of different additives on fermentation characteristics, nutrient composition and microbial communities of Leymus chinensis silage","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Leymus; Biology; Fermentation; Silage; Nutrient; Composition (language); Food science; Biotechnology; Agronomy; Botany; Ecology; Grassland","score_opus":0.009033533526266487,"score_gpt":0.21620433798596006,"score_spread":0.20717080445969357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410382438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735177,0.0014450132,0.00027853146,0.000043481316,0.000027964894,0.00003361175,0.00032659477,0.000017622542,0.00047550927],"genre_scores_gemma":[0.99469674,0.0011221168,0.0018538603,0.0001222694,0.000018482518,0.00008486972,0.0007961379,0.000019636223,0.001285825],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995982,0.000062001374,0.00004195955,0.00009062278,0.00014389076,0.00006332381],"domain_scores_gemma":[0.99978894,0.00002315817,0.000057746463,0.000009233286,0.00005239555,0.00006839373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033613096,0.0009179678,0.0005799046,0.0006540764,0.0004009859,0.0006271857,0.00031728396,0.00027839994,0.0010449019],"category_scores_gemma":[0.00034764712,0.0001450671,0.00052435463,0.0004604255,0.00023234099,0.00037644868,0.0005267421,0.0005519102,0.00015665818],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009365799,0.00020694794,0.0037380361,0.0003363187,0.000051441053,0.00007480712,0.000087661036,0.00011365026,0.988155,0.000022250273,0.000048102727,0.0062291697],"study_design_scores_gemma":[0.000060222534,0.0068531893,0.1309974,0.00014589839,0.00042449927,0.00015841184,0.0006334268,0.0014625817,0.85425836,0.00007462606,0.0048679365,0.00006353292],"about_ca_topic_score_codex":0.0030180686,"about_ca_topic_score_gemma":0.0066422173,"teacher_disagreement_score":0.0030180686,"about_ca_system_score_codex":0.00040178292,"about_ca_system_score_gemma":0.0005299531,"threshold_uncertainty_score":0.0060010552},"labels":[],"label_agreement":null},{"id":"W4410508793","doi":"10.1186/s12866-025-04028-x","title":"Prebiotic potential of oligosaccharides extracted from improved Ugandan varieties of millet, sesame, soybean, and sorghum: enhancing probiotic growth and enteric pathogen inhibition","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Food composition and properties","field":"Nursing","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mastercard Foundation","keywords":"Biology; Sorghum; Prebiotic; Probiotic; Pathogen; Biotechnology; Agronomy; Food science; Microbiology; Bacteria","score_opus":0.006323303286707409,"score_gpt":0.2055247349443851,"score_spread":0.1992014316576777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410508793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987703,0.0006275898,0.00023183088,0.000011758957,0.0000053209624,0.000012486275,0.00007090801,0.0000025813001,0.0002671912],"genre_scores_gemma":[0.9959786,0.00074726663,0.002172038,0.000030827294,0.0000037715768,0.000017557344,0.00025597276,0.0000048760653,0.0007890259],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999207,0.00002122169,0.000009361149,0.000012316621,0.000019926674,0.000016379687],"domain_scores_gemma":[0.99991906,0.000014439679,0.000027446917,0.000005867961,0.00001916374,0.000014080092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015463268,0.0004957431,0.00026159902,0.0003098356,0.00011952071,0.0003149408,0.00013323706,0.00015866404,0.0004184836],"category_scores_gemma":[0.00013778923,0.00011829006,0.00021701366,0.00029386242,0.000098676115,0.00028183544,0.00025894903,0.0003252392,0.00006217862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014512695,0.0000589693,0.00067263836,0.00007503647,0.00000823696,0.000029393419,0.000022450717,0.000031376654,0.99752873,0.000015695054,0.0000046300875,0.0014078191],"study_design_scores_gemma":[0.00001952627,0.0032251426,0.03894341,0.000047183257,0.00011067513,0.0002550175,0.00025497007,0.00030618213,0.9547512,0.000032709515,0.002041734,0.000012235155],"about_ca_topic_score_codex":0.000471867,"about_ca_topic_score_gemma":0.0018562442,"teacher_disagreement_score":0.0004957431,"about_ca_system_score_codex":0.00011118466,"about_ca_system_score_gemma":0.00016564535,"threshold_uncertainty_score":0.0013999939},"labels":[],"label_agreement":null},{"id":"W4410701179","doi":"10.1186/s12866-025-04036-x","title":"Myochromella unveiled: exploring its global distribution through a public database of amplicons","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"National Key Research and Development Program of China; Jilin Agricultural University; People's Government of Jilin Province; China Postdoctoral Science Foundation","keywords":"Biology; Parasitology; Amplicon; Distribution (mathematics); Database; Computational biology; Data science; Zoology; Genetics; Polymerase chain reaction; Computer science; Gene","score_opus":0.06187172377036585,"score_gpt":0.28040616104242877,"score_spread":0.21853443727206293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410701179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.71509755,0.006409725,0.017038433,0.00037461956,0.00008825189,0.00018960821,0.25261745,0.0019813594,0.0062030046],"genre_scores_gemma":[0.50431347,0.0029681553,0.068921916,0.0003491057,0.00007409456,0.00045197844,0.4200235,0.0005991792,0.0022985616],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99876404,0.00009208487,0.00012399507,0.00050975516,0.00030470642,0.00020555449],"domain_scores_gemma":[0.99838173,0.00034948663,0.0005230681,0.00016648207,0.0003665835,0.0002126341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001441717,0.00074751064,0.0008407483,0.005438821,0.0012082182,0.0014891991,0.00058370834,0.00081291364,0.0019126649],"category_scores_gemma":[0.0026810046,0.00042699152,0.00078248634,0.005481996,0.0004126319,0.0009963315,0.0014614154,0.0008028299,0.0018496861],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002822368,0.0003949563,0.26725832,0.005795687,0.0006054878,0.0018135218,0.005318746,0.00208299,0.49586338,0.0020945715,0.020872189,0.19507785],"study_design_scores_gemma":[0.000119552904,0.00043150404,0.7474885,0.0010547289,0.0010114188,0.0028008448,0.0029201203,0.009223285,0.058314,0.0015487692,0.174888,0.00019921754],"about_ca_topic_score_codex":0.0037805212,"about_ca_topic_score_gemma":0.007065829,"teacher_disagreement_score":0.005438821,"about_ca_system_score_codex":0.0004600085,"about_ca_system_score_gemma":0.001472374,"threshold_uncertainty_score":0.007624626},"labels":[],"label_agreement":null},{"id":"W4411926298","doi":"10.1186/s12866-025-04101-5","title":"Whole-Genome Sequencing and Bioinformatics Analysis of ESBL- producing Klebsiella pneumoniae in a Ghanaian teaching hospital","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Research Foundation","keywords":"Biology; Klebsiella pneumoniae; Parasitology; Whole genome sequencing; Genome; DNA sequencing; Microbiology; Computational biology; Genetics; Gene; Escherichia coli","score_opus":0.006305708555782245,"score_gpt":0.2359126884831329,"score_spread":0.22960697992735066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411926298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979062,0.00033321924,0.00026431098,0.000130079,0.000004493719,0.000018912337,0.0012036453,0.000017369823,0.00012164435],"genre_scores_gemma":[0.9937324,0.0005231397,0.0023665882,0.00013636454,0.00001032236,0.000028594059,0.0028598956,0.000015295112,0.00032745895],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99972564,0.00005216419,0.00003397044,0.000091468275,0.000036625202,0.00006021356],"domain_scores_gemma":[0.999632,0.000078432226,0.00013140889,0.000020350006,0.0000680575,0.00006969908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028433002,0.00034911893,0.00033598806,0.00081662834,0.0004500493,0.00042689728,0.00021319183,0.00038949674,0.00096258434],"category_scores_gemma":[0.0008519345,0.0001985182,0.00029643887,0.0013119271,0.00025749576,0.00018412627,0.00036715422,0.0002836461,0.00021266662],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014564437,0.00021606602,0.8257346,0.0005603482,0.00018443269,0.012532642,0.006364828,0.001418178,0.099497594,0.00015518072,0.002827283,0.049052477],"study_design_scores_gemma":[0.00005803721,0.00028355635,0.97685164,0.000092925664,0.00013250824,0.0053535597,0.005230732,0.0017905273,0.0043486897,0.0000991353,0.005736664,0.00002205743],"about_ca_topic_score_codex":0.009910089,"about_ca_topic_score_gemma":0.014841336,"teacher_disagreement_score":0.009910089,"about_ca_system_score_codex":0.0005007161,"about_ca_system_score_gemma":0.00068949553,"threshold_uncertainty_score":0.01970476},"labels":[],"label_agreement":null},{"id":"W4411926667","doi":"10.1186/s12866-025-04126-w","title":"Inferred bi-directional interactions between vaginal microbiota, metabolome and persistent HPV infection accompanied by high-grade cervical intraepithelial neoplasia","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China","keywords":"Metabolome; Biology; Cervical intraepithelial neoplasia; Parasitology; Internal medicine; Cervical cancer; Metabolomics; Bioinformatics; Genetics; Zoology; Medicine; Cancer","score_opus":0.019718598834675385,"score_gpt":0.2925892875013417,"score_spread":0.27287068866666636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411926667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962309,0.0013975208,0.00050103804,0.00006863396,0.000010533413,0.000017919921,0.001288726,0.0000111732625,0.00047345017],"genre_scores_gemma":[0.99836653,0.00027558548,0.00036774093,0.000035342116,0.000009183818,0.000011845693,0.00074092415,0.0000035608489,0.00018935476],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997595,0.000042760537,0.000021942453,0.00008363537,0.000037892554,0.000054245615],"domain_scores_gemma":[0.99962986,0.00006210684,0.00015087063,0.000043028358,0.00006134863,0.00005274092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040556004,0.000362565,0.00038226673,0.00076574495,0.00038523236,0.000687996,0.00016347172,0.0002648053,0.0010423512],"category_scores_gemma":[0.0007770294,0.00015811883,0.00046651548,0.0010112079,0.00017367426,0.00026608794,0.0005275244,0.00023603588,0.0001460116],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004300053,0.00002691138,0.9787218,0.000110488385,0.0003066895,0.00012460131,0.00012099714,0.00012956881,0.013501432,0.000047147507,0.0001358849,0.0063444423],"study_design_scores_gemma":[0.0000030894842,0.00006652479,0.9977798,0.000010829033,0.00014244036,0.00018403957,0.00015551817,0.00042311286,0.0008561485,0.00007138457,0.0003025276,0.0000047247227],"about_ca_topic_score_codex":0.0040963697,"about_ca_topic_score_gemma":0.006857202,"teacher_disagreement_score":0.0040963697,"about_ca_system_score_codex":0.00024505012,"about_ca_system_score_gemma":0.00041168852,"threshold_uncertainty_score":0.008145034},"labels":[],"label_agreement":null},{"id":"W4412015218","doi":"10.1186/s12866-025-04129-7","title":"FabG moonlights as an extracellular adhesin mediates cytoadhesion of Streptococcus suis via interaction with plasminogen","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Jiangsu Association for Science and Technology; Shandong Academy of Agricultural Sciences; National Natural Science Foundation of China","keywords":"Biology; Bacterial adhesin; Streptococcus suis; Microbiology; Parasitology; Extracellular; Streptococcus; Virology; Virulence; Zoology; Bacteria; Genetics; Gene","score_opus":0.015223664236531135,"score_gpt":0.29415327567729,"score_spread":0.27892961144075884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412015218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99595547,0.0017444396,0.0013967407,0.000103517734,0.000020074738,0.0000075047233,0.00006848881,0.000029643821,0.0006741689],"genre_scores_gemma":[0.99702626,0.00037538641,0.0009794483,0.00007761582,0.000007495438,0.000004683847,0.00014383925,0.0000044093376,0.0013808301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998704,0.000030966796,0.000005610729,0.000016551132,0.000035529687,0.000040877574],"domain_scores_gemma":[0.9999448,0.000009250617,0.000014103839,0.0000055827713,0.000008674171,0.0000175766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011590839,0.00022636293,0.00016872417,0.00017613932,0.0001354766,0.00024317094,0.00009325356,0.00024996238,0.0007759017],"category_scores_gemma":[0.00011822172,0.00006834377,0.00031518048,0.00011325285,0.00015355067,0.00011390929,0.00029921555,0.00022529559,0.0002499078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054424545,0.000011860931,0.00083133625,0.000024042414,0.0000038727626,0.00010197413,0.000033281245,0.000025851816,0.9974548,0.0000737798,0.00005503196,0.0013296542],"study_design_scores_gemma":[0.000016086204,0.00039187568,0.045888804,0.000019728597,0.000024169356,0.00070029555,0.00031230215,0.0027345777,0.94462687,0.00015505053,0.0051175095,0.000012662888],"about_ca_topic_score_codex":0.0005654476,"about_ca_topic_score_gemma":0.0006446689,"teacher_disagreement_score":0.0007759017,"about_ca_system_score_codex":0.00019014807,"about_ca_system_score_gemma":0.00008798025,"threshold_uncertainty_score":0.002595663},"labels":[],"label_agreement":null},{"id":"W4412467326","doi":"10.1186/s12866-025-04135-9","title":"Antimicrobial resistance and virulence gene profiles of Escherichia coli isolated from poultry farms using One Health perspective in Abeokuta, Nigeria","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe; Université de Montréal","funders":"Tertiary Education Trust Fund","keywords":"Biology; Virulence; Parasitology; Escherichia coli; Antimicrobial; Antibiotic resistance; Veterinary medicine; Microbiology; Biotechnology; One Health; Poultry farming; Drug resistance; Gene; Public health; Genetics; Antibiotics; Ecology; Zoology","score_opus":0.015911098158772116,"score_gpt":0.29461220054962123,"score_spread":0.2787011023908491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412467326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99946386,0.00011177407,0.000034864173,0.000013606588,0.0000034037078,0.000010028114,0.00011686608,6.997144e-7,0.0002449993],"genre_scores_gemma":[0.9990742,0.00029485024,0.00015916297,0.000030061161,0.0000032529401,0.000007517885,0.00018032157,8.7644594e-7,0.00024977812],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99981934,0.00002345939,0.00002361517,0.00005686181,0.000027615357,0.00004911663],"domain_scores_gemma":[0.9997682,0.00005142067,0.00007368706,0.000008592879,0.00005787251,0.00004020741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001705235,0.0004751527,0.00027609736,0.0008968752,0.0007245979,0.0005299157,0.00012420642,0.00043853733,0.0006673768],"category_scores_gemma":[0.00041361034,0.00026805952,0.0001580733,0.0006925562,0.00039006726,0.000273169,0.0003195833,0.00025922793,0.00014837003],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016695108,0.00013825335,0.9766241,0.00011782243,0.000018101078,0.0022424688,0.0024972665,0.000058042784,0.01400121,0.000024486926,0.00006964828,0.004041688],"study_design_scores_gemma":[0.0000041651733,0.00032655365,0.99006313,0.000050053415,0.000026015954,0.0018691114,0.0058067413,0.00006118115,0.001260263,0.000020021833,0.00050565036,0.0000070947654],"about_ca_topic_score_codex":0.010237111,"about_ca_topic_score_gemma":0.019127216,"teacher_disagreement_score":0.010237111,"about_ca_system_score_codex":0.00035317603,"about_ca_system_score_gemma":0.00036215983,"threshold_uncertainty_score":0.020355046},"labels":[],"label_agreement":null},{"id":"W4414033125","doi":"10.1186/s12866-025-04170-6","title":"Influence of dietary components on the gut microbiota of middle-aged adults: the gut-Mediterranean connection","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Libin Cardiovascular Institute of Alberta; Alberta Health Services; Alberta Cancer Foundation; University of Calgary","funders":"Health Canada; Bundesministerium für Bildung und Forschung; Canadian Institutes of Health Research; Alberta Cancer Foundation; Partenariat Canadien Contre Le Cancer; Natural Sciences and Engineering Research Council of Canada; Alberta Health Services","keywords":"Biology; Gut flora; Mediterranean diet; Mediterranean climate; Parasitology; Connection (principal bundle); Zoology; Ecology; Immunology; Internal medicine; Medicine","score_opus":0.02478438613273904,"score_gpt":0.2555834015292672,"score_spread":0.23079901539652814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414033125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978917,0.0011675376,0.000044814806,0.00010742078,0.000005994577,0.000006118238,0.00020064788,0.000003078401,0.00057274284],"genre_scores_gemma":[0.9995121,0.00021677221,0.00007123719,0.00003571511,0.0000045284287,0.0000021133467,0.00007444577,7.186612e-7,0.00008228749],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998147,0.000035179157,0.000010353016,0.00003922932,0.000049432096,0.00005105647],"domain_scores_gemma":[0.99962854,0.000038251157,0.00013684372,0.000021546479,0.000062728264,0.0001121253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027261063,0.00023034612,0.00026247845,0.00043516033,0.0004622562,0.00061559654,0.00025121745,0.000403237,0.0012243213],"category_scores_gemma":[0.00078805746,0.00013166455,0.00026462282,0.0007049986,0.00027660507,0.00016267574,0.0003829021,0.00028775033,0.0001201838],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022849621,0.00003271863,0.99675745,0.000014260463,0.00007775756,0.000038820777,0.00010056475,0.000009688319,0.0005598067,0.000012754671,0.000068147085,0.0020994823],"study_design_scores_gemma":[0.0000012598105,0.000021727514,0.99979764,0.0000037142127,0.000013179585,0.000024104265,0.000057023488,0.000015531923,0.000012992628,0.000006707839,0.000045529257,6.7777347e-7],"about_ca_topic_score_codex":0.050772242,"about_ca_topic_score_gemma":0.082499735,"teacher_disagreement_score":0.050772242,"about_ca_system_score_codex":0.0005934943,"about_ca_system_score_gemma":0.00056218426,"threshold_uncertainty_score":0.10095346},"labels":[],"label_agreement":null},{"id":"W4414466572","doi":"10.1186/s12866-025-04333-5","title":"Consumption of traditional Sardinian fermented milk promotes changes in the rat gut microbiota composition and functions","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cytodiagnostics (Canada)","funders":"","keywords":"Gut flora; Fermentation; Composition (language); Probiotic; Feces; Microbiome; Bacteria; Gut microflora","score_opus":0.026131244044982786,"score_gpt":0.2668403799585436,"score_spread":0.2407091359135608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414466572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99938047,0.00022630539,0.00011252516,0.000035629346,0.000009119107,0.0000058601654,0.00009657151,0.000014057645,0.00011933033],"genre_scores_gemma":[0.9969893,0.0003701702,0.0005517687,0.00008303015,0.000009605288,0.00004197671,0.0002951348,0.000008128876,0.0016507786],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999866,0.000019719284,0.0000069539133,0.000043330147,0.000016910237,0.00004706907],"domain_scores_gemma":[0.99981576,0.000013468977,0.000063441206,0.000020791465,0.00001961976,0.00006690829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001332851,0.00050425733,0.00038214962,0.00042459532,0.00017028075,0.00029505556,0.00013326896,0.00029918816,0.0014002875],"category_scores_gemma":[0.00015032482,0.00019503727,0.00033011776,0.00019933036,0.00028330635,0.00016068702,0.00031984973,0.00062387745,0.00019553759],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008749211,0.00090946263,0.0074475934,0.00012115938,0.00005121827,0.000120275225,0.00016237721,0.00007434822,0.9753507,0.00003444428,0.00011847876,0.006860691],"study_design_scores_gemma":[0.0002590138,0.023347529,0.39099607,0.000067373716,0.0002882723,0.00034045844,0.000747883,0.0013481248,0.5788327,0.00014021335,0.0035894602,0.000042910662],"about_ca_topic_score_codex":0.0011230852,"about_ca_topic_score_gemma":0.0019752693,"teacher_disagreement_score":0.0014002875,"about_ca_system_score_codex":0.00043248635,"about_ca_system_score_gemma":0.00030447915,"threshold_uncertainty_score":0.0046844482},"labels":[],"label_agreement":null},{"id":"W4414994583","doi":"10.1186/s12866-025-04398-2","title":"High prevalence of MDR and XDR Escherichia coli in hospital wastewater from Shiraz, Iran: ESBL and carbapenemase production","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatoon Medical Imaging; University of Saskatchewan","funders":"Shiraz University; Shiraz University of Medical Sciences","keywords":"Meropenem; Escherichia coli; Imipenem; Antibiotic resistance; Ampicillin; Antimicrobial; Carbapenem; Genotype","score_opus":0.005057532996507536,"score_gpt":0.21364840713258737,"score_spread":0.20859087413607982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414994583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99937207,0.00020449204,0.000079334,0.00004070397,0.0000057070765,0.000009274,0.00009704005,0.0000042652896,0.00018721182],"genre_scores_gemma":[0.99933594,0.00014469314,0.00016595956,0.000032651147,0.000015155636,0.000006612608,0.00017342078,0.0000011844193,0.00012438878],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917966,0.00011307598,0.00011099437,0.00016676186,0.0002822453,0.00014717091],"domain_scores_gemma":[0.99929214,0.00009863734,0.0003024131,0.00002849514,0.00020352901,0.00007467781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003932542,0.00042114675,0.00038210224,0.0010166013,0.0003770291,0.00075832923,0.00022552296,0.00048448713,0.0010236055],"category_scores_gemma":[0.0007601854,0.0002123971,0.00026855915,0.00091964746,0.00028006194,0.00034781455,0.00037272775,0.0002231373,0.00017126606],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015808531,0.00020859142,0.95474,0.00016945187,0.000058437257,0.0010405381,0.00055283296,0.00006701961,0.030048044,0.000022054106,0.00023521755,0.012699774],"study_design_scores_gemma":[0.000008168305,0.0001846765,0.9936155,0.000011730264,0.000031675216,0.0014423758,0.001040049,0.000081443424,0.0031603465,0.000021581965,0.0003941152,0.0000082795395],"about_ca_topic_score_codex":0.0033499366,"about_ca_topic_score_gemma":0.003357314,"teacher_disagreement_score":0.0033499366,"about_ca_system_score_codex":0.00021952407,"about_ca_system_score_gemma":0.00041046747,"threshold_uncertainty_score":0.0066608787},"labels":[],"label_agreement":null},{"id":"W4415166402","doi":"10.1186/s12866-025-04315-7","title":"Phenotypic and genotypic characterization of ST103 serotype Ia Streptococcus agalactiae isolated from bovine mastitis in China","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"High-end Foreign Experts Recruitment Plan of China; National Natural Science Foundation of China","keywords":"Streptococcus agalactiae; Multilocus sequence typing; Mastitis; Virulence; Serotype; Antibiotic resistance; Genotype; Pathogen","score_opus":0.00597908144805765,"score_gpt":0.24137520102415638,"score_spread":0.23539611957609874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415166402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992894,0.00010213889,0.000110303954,0.000018967581,0.0000023352013,0.000012316266,0.00026894285,0.0000022826493,0.00019324417],"genre_scores_gemma":[0.9980525,0.00015210034,0.00033574452,0.00004359814,0.0000060540438,0.000019188734,0.0009914023,0.0000026986731,0.00039672697],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995906,0.000034081495,0.00005892484,0.00010458686,0.0001338664,0.00007807949],"domain_scores_gemma":[0.99959403,0.000047978832,0.00011556499,0.000025038105,0.00011366097,0.00010371149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026163322,0.00042316047,0.00047896427,0.0010550251,0.00039816735,0.0003796279,0.00022544988,0.00032181677,0.00029934454],"category_scores_gemma":[0.00047296102,0.00020164762,0.00045983557,0.0016497573,0.0002644208,0.00015146653,0.00031901893,0.00017239492,0.00010252378],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035851196,0.00013281968,0.6149078,0.00014100446,0.00008615123,0.0010525018,0.0018912395,0.00030323904,0.36898845,0.000051505205,0.00018658835,0.01190026],"study_design_scores_gemma":[0.000006293587,0.00013393011,0.99477947,0.0000056691815,0.000031576095,0.00045723116,0.0004495191,0.00029935606,0.0034743135,0.000010890035,0.00034451595,0.000007247274],"about_ca_topic_score_codex":0.026273252,"about_ca_topic_score_gemma":0.021748647,"teacher_disagreement_score":0.026273252,"about_ca_system_score_codex":0.0005405675,"about_ca_system_score_gemma":0.00060130353,"threshold_uncertainty_score":0.05224067},"labels":[],"label_agreement":null},{"id":"W4415174760","doi":"10.1186/s12866-025-04413-6","title":"Ecological factors that drive microbial communities in culturally diverse fermented foods","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"York University; New York University Abu Dhabi; Bill and Melinda Gates Foundation","keywords":"Diversity (politics); Fermentation in food processing; Microbial ecology; Traditional knowledge; Community; Cultural diversity; Biodiversity; Culturally appropriate","score_opus":0.034787077441205065,"score_gpt":0.2396821978238794,"score_spread":0.20489512038267432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415174760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786144,0.0003703105,0.0004918508,0.000057352645,0.0000072263733,0.000012072849,0.0003189376,0.0000058659525,0.0008748517],"genre_scores_gemma":[0.99831223,0.00023961763,0.0008209366,0.000077957695,0.000005873037,0.000017499502,0.00034667252,0.000006072298,0.0001732066],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995059,0.0000909911,0.000027857737,0.00019361146,0.000070570306,0.00011112415],"domain_scores_gemma":[0.9994708,0.000107372136,0.00019023792,0.00003355344,0.00010747632,0.00009055101],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038251228,0.00032782953,0.00035544642,0.0005173346,0.0006048336,0.0012991051,0.00019906029,0.0003507282,0.0016548046],"category_scores_gemma":[0.0008787015,0.00015045116,0.00030206834,0.0007422822,0.0005148717,0.00056519057,0.00089031283,0.00048276666,0.00027220653],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048180574,0.00019979294,0.6221835,0.00045322577,0.00020556885,0.00055602373,0.0032139025,0.0004384181,0.35480022,0.00056353,0.00037463388,0.01652939],"study_design_scores_gemma":[0.0000057396937,0.00012433407,0.9823647,0.000056210527,0.00005761617,0.00036569894,0.0045210365,0.0005219142,0.00978079,0.0004989068,0.001676284,0.000026779446],"about_ca_topic_score_codex":0.002050483,"about_ca_topic_score_gemma":0.0037711135,"teacher_disagreement_score":0.002050483,"about_ca_system_score_codex":0.00031179134,"about_ca_system_score_gemma":0.0004546606,"threshold_uncertainty_score":0.005535841},"labels":[],"label_agreement":null},{"id":"W4416203712","doi":"10.1186/s12866-025-04463-w","title":"Plant identity and environmental filtering are the key drivers of bacterial community structure in four desert plant species from the Sahara Desert in Morocco","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Université Mohammed VI Polytechnique","keywords":"Desert (philosophy); Key (lock); Plant species; Community structure; Plant community; Community; Desert climate; Entomology","score_opus":0.026824163643717785,"score_gpt":0.20693833321220112,"score_spread":0.18011416956848333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416203712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995005,0.00021812196,0.00004297641,0.000008459177,0.0000011357611,0.0000019156203,0.00011645059,9.657712e-7,0.00010942327],"genre_scores_gemma":[0.9995577,0.00007355606,0.000105796644,0.000010795159,0.0000017594366,0.0000032591172,0.00017797809,6.516283e-7,0.000068450136],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998627,0.000025874733,0.00000927405,0.00004434887,0.000016518488,0.000041187726],"domain_scores_gemma":[0.9998317,0.000028670085,0.00006210268,0.000009326101,0.00004105394,0.00002723437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019633441,0.00029541954,0.0002916285,0.00065455935,0.0005380079,0.00034827506,0.00019799627,0.00020015558,0.0006016005],"category_scores_gemma":[0.00029278663,0.000084364656,0.00017761045,0.00049191614,0.0002582385,0.00017125708,0.00031461098,0.00010665899,0.0001061879],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019189678,0.00003362064,0.9480648,0.00010428293,0.00008492385,0.0003124318,0.0015775985,0.000146257,0.040242765,0.00003935152,0.00008815882,0.009113919],"study_design_scores_gemma":[0.0000011850922,0.000030454414,0.99836963,0.0000075178514,0.000011436918,0.00008812537,0.0007367305,0.00009816303,0.0003717887,0.000010991373,0.00027132724,0.000002675286],"about_ca_topic_score_codex":0.016272109,"about_ca_topic_score_gemma":0.032240093,"teacher_disagreement_score":0.016272109,"about_ca_system_score_codex":0.00050124427,"about_ca_system_score_gemma":0.00023353209,"threshold_uncertainty_score":0.032354772},"labels":[],"label_agreement":null},{"id":"W4416204709","doi":"10.1186/s12866-025-04482-7","title":"Identification of poultry commensal bacteria with the ability to inhibit the growth of Salmonella enterica serovar Typhimurium in co-culture","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Egg Farmers of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Salmonella enterica; Serotype; Probiotic; Identification (biology); Bacteria; Salmonella; Parasitology; Feces","score_opus":0.010980598436022011,"score_gpt":0.24076812573240383,"score_spread":0.22978752729638183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416204709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99648476,0.0007931684,0.0013048284,0.000040194856,0.000020315481,0.00003565458,0.00041085217,0.000022341363,0.00088782416],"genre_scores_gemma":[0.98993367,0.00056031585,0.0056813224,0.00007861038,0.000013508938,0.000059592858,0.001754393,0.000019692086,0.0018989266],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996152,0.000049127448,0.000056065186,0.00009454115,0.00012856603,0.00005657814],"domain_scores_gemma":[0.99964774,0.000072168004,0.000075724594,0.00005033595,0.00010048778,0.000053676038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023368867,0.00053038716,0.0004676206,0.00039131704,0.0001879875,0.0003149432,0.00024379055,0.00026289697,0.00060167816],"category_scores_gemma":[0.00023995966,0.00015951779,0.00037599914,0.0003357761,0.00018330189,0.00017010047,0.0003471649,0.00037712598,0.00033432638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012335414,0.00005579719,0.0030179734,0.00005578937,0.000011544903,0.000053404783,0.000027077496,0.000027241113,0.9956626,0.000005321786,0.000018888344,0.0009410978],"study_design_scores_gemma":[0.000012921267,0.002102633,0.11816973,0.000019649493,0.000121403005,0.0008744885,0.0003038714,0.0008373141,0.8760483,0.000018566068,0.001478882,0.000012260426],"about_ca_topic_score_codex":0.0016186398,"about_ca_topic_score_gemma":0.0026705093,"teacher_disagreement_score":0.0016186398,"about_ca_system_score_codex":0.00015600318,"about_ca_system_score_gemma":0.00026765832,"threshold_uncertainty_score":0.0032184124},"labels":[],"label_agreement":null},{"id":"W4416671888","doi":"10.1186/s12866-025-04485-4","title":"Pan-genome analysis of Ralstonia pseudosolanacearum associated with tobacco bacterial wilt in China","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biovar; Virulence; Genome; Ralstonia solanacearum; Phylogenetic tree; Intergenic region; Bacterial wilt; Gene; Multiple Loci VNTR Analysis","score_opus":0.009228284229983452,"score_gpt":0.1988143230251639,"score_spread":0.18958603879518046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416671888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962721,0.00037030995,0.00052596163,0.000034518147,0.000006500332,0.000027513077,0.0024043228,0.000016489383,0.00034230802],"genre_scores_gemma":[0.9859176,0.00045605752,0.001395315,0.000087420274,0.000010642263,0.000032022646,0.011393428,0.000017774504,0.00068962923],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997485,0.000015338042,0.000030054496,0.00008853817,0.00006764493,0.000049883198],"domain_scores_gemma":[0.99967146,0.000025181382,0.00009751059,0.000021693098,0.00009600213,0.000088139444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023985008,0.0005375584,0.00049739884,0.0018696791,0.0004458876,0.00032640932,0.00022699921,0.00027536365,0.00043382336],"category_scores_gemma":[0.00028100045,0.00019648705,0.00092059997,0.0022895355,0.00015026965,0.00018896711,0.000477177,0.00024679647,0.00013750534],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052569044,0.00011962981,0.3460969,0.00042125277,0.00036753571,0.0012006683,0.000889503,0.00089277927,0.62959564,0.00011817791,0.00055770745,0.019214466],"study_design_scores_gemma":[0.000009463628,0.00009140804,0.9926605,0.000008898636,0.00011888873,0.00043176726,0.00024981002,0.00075286464,0.004436694,0.000024039431,0.0012043681,0.000011161104],"about_ca_topic_score_codex":0.013881887,"about_ca_topic_score_gemma":0.015733315,"teacher_disagreement_score":0.013881887,"about_ca_system_score_codex":0.00045679617,"about_ca_system_score_gemma":0.0006861044,"threshold_uncertainty_score":0.027602196},"labels":[],"label_agreement":null},{"id":"W7117740680","doi":"10.1186/s12866-025-04624-x","title":"The emerging tick-borne Yezo virus - current knowledge, challenges, and perspectives","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal","keywords":"Public health; Disease; Preparedness; Virus; Lyme disease; Tick; Parasitology; Global health","score_opus":0.04469666945226679,"score_gpt":0.3337926418509512,"score_spread":0.2890959723986844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117740680","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011959272,0.99058247,0.00035604296,0.006104439,0.0006404689,0.000004556057,0.000043267493,0.000013186178,0.0010596014],"genre_scores_gemma":[0.0051171766,0.9917562,0.00044741933,0.0013054875,0.0009788645,0.0000070329083,0.00005117836,0.0000021176675,0.00033464746],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99958533,0.00009506959,0.00005673238,0.00009043841,0.00009500017,0.00007745661],"domain_scores_gemma":[0.9988715,0.000493001,0.00018375735,0.000031107505,0.00028791657,0.00013276163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001537024,0.00049570366,0.0009154676,0.001147981,0.00040667524,0.0021633336,0.0007697792,0.0019872077,0.0030988732],"category_scores_gemma":[0.0013494889,0.00022250014,0.00040212262,0.0012255388,0.0010347136,0.0034489052,0.00095220946,0.0018987121,0.0007824994],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014505777,0.000093503106,0.0029838856,0.018597867,0.00009623387,0.00081190787,0.0005935056,0.0007521868,0.0056834137,0.013157826,0.035033185,0.9220514],"study_design_scores_gemma":[0.000016599293,0.00023161653,0.005221424,0.01318087,0.00018959978,0.0028266807,0.0025089413,0.0006809105,0.0019786486,0.019333513,0.9537634,0.00006777838],"about_ca_topic_score_codex":0.001857455,"about_ca_topic_score_gemma":0.0026579206,"teacher_disagreement_score":0.0030988732,"about_ca_system_score_codex":0.00084804883,"about_ca_system_score_gemma":0.002825253,"threshold_uncertainty_score":0.010366797},"labels":[],"label_agreement":null}]}