{"meta":{"query_hash":"0926402c80a4","filters":{"venue":"Bioengineered Bugs"},"cohort_total":4,"direct_labels_cover":0,"predictions_cover":4,"exported":4,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/0926402c80a4","api":"https://metacan.xera.ac/api/v1/cohort?venue=Bioengineered+Bugs"},"results":[{"id":"W1997494984","doi":"10.4161/bbug.2.6.17237","title":"Metabolic engineering to improve 5-aminolevulinic acid production","year":2011,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Key Research and Development Program of China; University of Waterloo; National Natural Science Foundation of China","keywords":"Metabolic engineering; Escherichia coli; Metabolic pathway; Biochemistry; Chemistry; Synthetic biology; Biotechnology; Biochemical engineering; Metabolism; Computational biology; Biology; Enzyme; Engineering","score_opus":0.012501633016729097,"score_gpt":0.20942862346102906,"score_spread":0.19692699044429995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997494984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9516927,0.0025964966,0.041338034,0.00047872114,0.000092207425,0.00008775918,0.00036378257,0.0004162864,0.0029339085],"genre_scores_gemma":[0.96694964,0.0024754505,0.02791488,0.00007521968,0.000011256754,0.000039091472,0.0004382156,0.000079031735,0.002017233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997615,0.000040914303,0.000034464734,0.0000420594,0.00006638375,0.000054699078],"domain_scores_gemma":[0.9999043,0.000015393367,0.00003043039,0.00001109974,0.000018142142,0.000020715657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002092792,0.000633583,0.000430794,0.0004476134,0.0001709119,0.0006328666,0.0002913634,0.00047915152,0.0005038588],"category_scores_gemma":[0.0003427581,0.00018373586,0.0003987367,0.0005533255,0.00017579652,0.0003785805,0.00053245487,0.00054049125,0.00029507806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028918394,0.000023407663,0.00017654993,0.000063161824,0.000009288141,0.00010458003,0.000017092143,0.00059377507,0.9950551,0.0002932603,0.000031604428,0.003603276],"study_design_scores_gemma":[0.00000922384,0.00013417235,0.0007926779,0.00000926509,0.00003154437,0.00022558832,0.000026574222,0.0023654373,0.99091804,0.00010265741,0.0053753844,0.000009324196],"about_ca_topic_score_codex":0.00086590595,"about_ca_topic_score_gemma":0.0010286729,"teacher_disagreement_score":0.00086590595,"about_ca_system_score_codex":0.0005016649,"about_ca_system_score_gemma":0.00032011664,"threshold_uncertainty_score":0.0036398172},"labels":[],"label_agreement":null},{"id":"W2008805857","doi":"10.4161/bbug.2.5.16559","title":"Developing strategies to enhance and focus humoral immune responses using filamentous phage as a model antigen","year":2011,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Filamentous bacteriophage; Phagemid; Hapten; Phage display; Bacteriophage; Epitope; Antibody; Antigen; Biology; Peptide; Peptide library; Immune system; Microbiology; Chemistry; Peptide sequence; Molecular biology; Virology; Biochemistry; Escherichia coli; Gene; Immunology","score_opus":0.1007668366629494,"score_gpt":0.378693781016498,"score_spread":0.2779269443535486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008805857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86767626,0.008267778,0.117558636,0.0005757322,0.00022003107,0.00084936264,0.00018544063,0.00038634628,0.0042804517],"genre_scores_gemma":[0.89892656,0.0062968777,0.09076056,0.00035383424,0.00008787662,0.00041351697,0.0002521967,0.000044540204,0.0028641257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998078,0.000041194344,0.000011662773,0.00003446705,0.00005116569,0.00005373503],"domain_scores_gemma":[0.99988794,0.000027647478,0.000027950124,0.000009719533,0.000015690968,0.00003105399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004623113,0.00057794654,0.00039521768,0.00041767157,0.00017274871,0.00050001167,0.00040077188,0.00056862604,0.00062488165],"category_scores_gemma":[0.00018736049,0.00021006208,0.00032656218,0.00021144982,0.00029255167,0.00031809023,0.00030822607,0.00080699055,0.0002639445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002793978,0.00010406242,0.00009594024,0.00008541211,0.000006602204,0.00003145998,0.000014890873,0.00025463453,0.9938443,0.00033010438,0.000044685632,0.0051599573],"study_design_scores_gemma":[0.00008813507,0.002808095,0.0015296859,0.000027440328,0.000054129167,0.00023984778,0.00004161142,0.0027903956,0.9807457,0.00035374836,0.011304762,0.000016372904],"about_ca_topic_score_codex":0.0004540962,"about_ca_topic_score_gemma":0.0007465962,"teacher_disagreement_score":0.00062488165,"about_ca_system_score_codex":0.0003512574,"about_ca_system_score_gemma":0.00032586456,"threshold_uncertainty_score":0.0025485158},"labels":[],"label_agreement":null},{"id":"W2058322424","doi":"10.4161/bbug.1.5.12941","title":"Engineering organisms for industrial fuel production","year":2010,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada)","funders":"","keywords":"Raw material; Renewable fuels; Renewable energy; Fossil fuel; Biochemical engineering; Production (economics); Petroleum; Environmental science; Waste management; Engineering; Economics; Chemistry","score_opus":0.009287969219292227,"score_gpt":0.2043647460989639,"score_spread":0.19507677687967168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058322424","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30875462,0.043544553,0.51043445,0.0075584217,0.0032827167,0.00085221644,0.0020280182,0.003969331,0.11957568],"genre_scores_gemma":[0.6009645,0.024931129,0.33816707,0.0016178703,0.0002017089,0.00065165636,0.001728436,0.00038690766,0.031350657],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996325,0.00006696368,0.000029546707,0.00009070656,0.00013119132,0.000049140668],"domain_scores_gemma":[0.9998072,0.00003590179,0.00004634593,0.0000436357,0.000033057884,0.000033886554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032841234,0.0006320311,0.00034176276,0.0004035223,0.0003386931,0.0011680335,0.0005020586,0.0009683657,0.002630668],"category_scores_gemma":[0.00058682717,0.0002851784,0.0005485537,0.0004659882,0.00070416403,0.00096294214,0.0010108117,0.0015130176,0.0022324466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005728601,0.00012565198,0.0006472764,0.0005158062,0.0000272401,0.00026499646,0.00013818988,0.0013455091,0.90645915,0.029041624,0.0018191737,0.059558056],"study_design_scores_gemma":[0.000046699086,0.0006148471,0.0014157244,0.00020346245,0.00006356474,0.0009508782,0.00014506387,0.0033738043,0.59720737,0.01531502,0.38061875,0.00004486641],"about_ca_topic_score_codex":0.0003214451,"about_ca_topic_score_gemma":0.00039390722,"teacher_disagreement_score":0.002630668,"about_ca_system_score_codex":0.0006797146,"about_ca_system_score_gemma":0.0004958771,"threshold_uncertainty_score":0.008800507},"labels":[],"label_agreement":null},{"id":"W2083560764","doi":"10.4161/bbug.1.2.11102","title":"Bioengineered viral vectors for targeting and killing prostate cancer cells","year":2010,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Terry Fox Foundation","keywords":"Prostate cancer; Cancer research; Gene knockdown; Biology; RNA interference; Viral vector; Genetic enhancement; Cancer; Cancer cell; Small interfering RNA; Transduction (biophysics); Transfection; Cell culture; Gene; RNA; Genetics","score_opus":0.008088202561435437,"score_gpt":0.26582598425296566,"score_spread":0.2577377816915302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083560764","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29462534,0.035017952,0.6516834,0.0010908329,0.0012962407,0.0011718285,0.002882905,0.0017269723,0.01050452],"genre_scores_gemma":[0.58975947,0.026235143,0.35061833,0.00045506298,0.00020415065,0.0011078112,0.0062656705,0.00028702884,0.02506741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949884,0.00008614328,0.000054660304,0.00005859678,0.00025249255,0.000049273556],"domain_scores_gemma":[0.9998535,0.000026049272,0.00005312328,0.000020697387,0.000027743272,0.000018753391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050568307,0.00044124157,0.0003727603,0.00046134501,0.00020424266,0.0008432812,0.00058222347,0.00070217677,0.0008407375],"category_scores_gemma":[0.00033527566,0.00033917517,0.00036190543,0.00037835177,0.00041422513,0.0004599927,0.00027008695,0.0014829788,0.0007963535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057006222,0.00004626368,0.00008733758,0.00024315476,0.000017498762,0.00008609801,0.000058362428,0.0007104739,0.9779986,0.005649023,0.00034116983,0.014704987],"study_design_scores_gemma":[0.000060750135,0.0005209342,0.00056436646,0.00006588344,0.000049619295,0.0006217837,0.000028472177,0.0043038065,0.9153827,0.0014057532,0.07696099,0.000034847435],"about_ca_topic_score_codex":0.0004573166,"about_ca_topic_score_gemma":0.0008401945,"teacher_disagreement_score":0.0008432812,"about_ca_system_score_codex":0.00063175743,"about_ca_system_score_gemma":0.00052758254,"threshold_uncertainty_score":0.004583776},"labels":[],"label_agreement":null}]}