{"meta":{"query_hash":"0926402c80a4","filters":{"venue":"Bioengineered Bugs"},"cohort_total":4,"direct_labels_cover":0,"predictions_cover":4,"exported":4,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/0926402c80a4","api":"https://metacan.xera.ac/api/v1/cohort?venue=Bioengineered+Bugs"},"results":[{"id":"W1997494984","doi":"10.4161/bbug.2.6.17237","title":"Metabolic engineering to improve 5-aminolevulinic acid production","year":2011,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Key Research and Development Program of China; University of Waterloo; National Natural Science Foundation of China","keywords":"Metabolic engineering; Escherichia coli; Metabolic pathway; Biochemistry; Chemistry; Synthetic biology; Biotechnology; Biochemical engineering; Metabolism; Computational biology; Biology; Enzyme; Engineering","score_opus":0.012501633016729097,"score_gpt":0.20942862346102906,"score_spread":0.19692699044429995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997494984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9856858,0.0030310056,0.008262287,0.000102126476,0.0015598158,0.0003847004,0.000035598256,0.0001144798,0.0008241709],"genre_scores_gemma":[0.99057984,0.00017950514,0.007765623,0.00016909196,0.0005964802,0.00007618341,0.000047156456,0.000043745727,0.00054237177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988832,0.0000130627795,0.00020630346,0.00043594008,0.000111134425,0.0003503513],"domain_scores_gemma":[0.99924594,0.0000018847868,0.00003805812,0.00048676482,0.00006326246,0.0001641003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013704466,0.00021868965,0.00017496452,0.00011334804,0.00003313017,0.000012985436,0.00022463156,0.00012688663,0.000021954467],"category_scores_gemma":[0.00017956099,0.0002158727,0.000100122335,0.0001963677,0.000020361014,0.00000795344,0.000087796354,0.00008057064,0.00007472579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042819145,0.00005608257,0.00020973264,0.000015483314,0.000050615425,0.0000012980646,0.0000827303,0.000070484515,0.99425703,0.00031674965,0.001309714,0.0035872625],"study_design_scores_gemma":[0.0002954475,0.00011738615,0.009639295,0.000005561609,0.00003340648,0.000007437554,0.0000349383,0.000046357196,0.9377341,0.00002163383,0.051753663,0.00031076398],"about_ca_topic_score_codex":0.000018188193,"about_ca_topic_score_gemma":0.000003194241,"teacher_disagreement_score":0.056522917,"about_ca_system_score_codex":0.000005195812,"about_ca_system_score_gemma":0.000032701704,"threshold_uncertainty_score":0.8803033},"labels":[],"label_agreement":null},{"id":"W2008805857","doi":"10.4161/bbug.2.5.16559","title":"Developing strategies to enhance and focus humoral immune responses using filamentous phage as a model antigen","year":2011,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Filamentous bacteriophage; Phagemid; Hapten; Phage display; Bacteriophage; Epitope; Antibody; Antigen; Biology; Peptide; Peptide library; Immune system; Microbiology; Chemistry; Peptide sequence; Molecular biology; Virology; Biochemistry; Escherichia coli; Gene; Immunology","score_opus":0.1007668366629494,"score_gpt":0.378693781016498,"score_spread":0.2779269443535486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008805857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860449,0.001972761,0.00975652,0.0005185211,0.00005923197,0.00034066697,0.000023791692,0.00006277677,0.0012208751],"genre_scores_gemma":[0.96059924,0.00024755244,0.03703456,0.00016096799,0.00008081185,0.000014658497,0.000008326235,0.00002835121,0.0018255516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870455,0.000025212728,0.00025522462,0.00029780206,0.00027096548,0.00044623716],"domain_scores_gemma":[0.999415,0.000036396665,0.00003508874,0.00020428117,0.00009925205,0.00020999384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016625885,0.00021263919,0.00030282594,0.0002088183,0.00011023552,0.00004305987,0.00012294404,0.000076694494,0.000089791],"category_scores_gemma":[0.00005873159,0.0001797306,0.00006125369,0.00024492264,0.0000809091,0.00012815757,0.0001276509,0.00015416645,0.0000424358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016271649,0.00008351963,0.0006658505,0.00017343402,0.00013664257,0.00030346427,0.002856243,0.00006813251,0.9853355,0.0043079234,0.00011968724,0.004322388],"study_design_scores_gemma":[0.0009332267,0.0009465932,0.036499638,0.00052752404,0.000056769295,0.0004329667,0.0014310455,0.021488214,0.9331602,0.0020152414,0.0017724358,0.0007361723],"about_ca_topic_score_codex":0.00085937016,"about_ca_topic_score_gemma":0.000012725787,"teacher_disagreement_score":0.052175373,"about_ca_system_score_codex":0.00005849101,"about_ca_system_score_gemma":0.00033148247,"threshold_uncertainty_score":0.7329201},"labels":[],"label_agreement":null},{"id":"W2058322424","doi":"10.4161/bbug.1.5.12941","title":"Engineering organisms for industrial fuel production","year":2010,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada)","funders":"","keywords":"Raw material; Renewable fuels; Renewable energy; Fossil fuel; Biochemical engineering; Production (economics); Petroleum; Environmental science; Waste management; Engineering; Economics; Chemistry","score_opus":0.009287969219292227,"score_gpt":0.2043647460989639,"score_spread":0.19507677687967168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058322424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98410076,0.00015797566,0.008317538,0.0003849312,0.006389181,0.0004531414,0.000032700675,0.00012992973,0.000033850054],"genre_scores_gemma":[0.98385274,0.000029197574,0.0086086225,0.000023295876,0.0062368196,0.000052695425,0.00018118069,0.00005128058,0.00096413697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991296,0.0000049979967,0.00017060812,0.00036614417,0.00007429308,0.00025434542],"domain_scores_gemma":[0.99945915,0.000002786064,0.000036819,0.0003334608,0.000091994516,0.00007580188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020369695,0.00017846723,0.00012538412,0.00007610553,0.000041086543,0.000025054245,0.00013098416,0.0002590057,0.000016013359],"category_scores_gemma":[0.000475825,0.00017718665,0.00007777205,0.00014037944,0.000021266933,0.000005771168,0.00002859763,0.0001742798,0.000011226247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027438675,0.000026412194,0.000039003382,0.000027928843,0.000027664564,1.3538858e-7,0.000012732128,0.00045998988,0.992547,0.00018835522,0.0051809135,0.0014624642],"study_design_scores_gemma":[0.0003240689,0.00006658415,0.0002182336,0.00000512898,0.000016382526,0.000025189589,0.0000048989214,0.00013042038,0.71291655,0.000006996826,0.2860957,0.00018984269],"about_ca_topic_score_codex":0.0000048517168,"about_ca_topic_score_gemma":0.0000041918597,"teacher_disagreement_score":0.28091478,"about_ca_system_score_codex":0.000007827478,"about_ca_system_score_gemma":0.000036550024,"threshold_uncertainty_score":0.72254616},"labels":[],"label_agreement":null},{"id":"W2083560764","doi":"10.4161/bbug.1.2.11102","title":"Bioengineered viral vectors for targeting and killing prostate cancer cells","year":2010,"lang":"en","type":"article","venue":"Bioengineered Bugs","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Terry Fox Foundation","keywords":"Prostate cancer; Cancer research; Gene knockdown; Biology; RNA interference; Viral vector; Genetic enhancement; Cancer; Cancer cell; Small interfering RNA; Transduction (biophysics); Transfection; Cell culture; Gene; RNA; Genetics","score_opus":0.008088202561435437,"score_gpt":0.26582598425296566,"score_spread":0.2577377816915302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083560764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953099,0.0021413153,0.00084788393,0.0002815015,0.00060756085,0.0005553031,0.00018975366,0.000051878098,0.000014912767],"genre_scores_gemma":[0.9948459,0.0004764857,0.0030600626,0.00009413474,0.00071110344,0.00017623525,0.0001726035,0.00008178938,0.00038168707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866986,0.000018728826,0.0002127513,0.00043917485,0.00013940231,0.0005201097],"domain_scores_gemma":[0.9993499,0.00002457719,0.000048379123,0.0002810718,0.0001253976,0.00017067623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027151854,0.00024742333,0.00017930847,0.00009467656,0.000104822895,0.000051686457,0.00019482968,0.00020030313,0.000028573464],"category_scores_gemma":[0.00006350706,0.00023639399,0.00009095045,0.000111285684,0.000083075465,0.000007011119,0.0000666771,0.00019790334,0.000004724502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039548415,0.000023914115,0.00024858536,0.000054851895,0.00006344354,0.0000010965186,0.000055798955,0.00040216357,0.9943881,0.000017898656,0.0021705662,0.0021781116],"study_design_scores_gemma":[0.00087393913,0.00069835054,0.000097364,0.000010730743,0.000015356303,0.0000023130594,0.000028301045,0.0036700366,0.9699373,0.000019678091,0.024327954,0.00031867393],"about_ca_topic_score_codex":0.000029924984,"about_ca_topic_score_gemma":0.000044191118,"teacher_disagreement_score":0.024450783,"about_ca_system_score_codex":0.000014158392,"about_ca_system_score_gemma":0.000087544955,"threshold_uncertainty_score":0.9639867},"labels":[],"label_agreement":null}]}