{"meta":{"query_hash":"67be84de6f76","filters":{"venue":"Current Protocols"},"cohort_total":114,"direct_labels_cover":0,"predictions_cover":114,"exported":114,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/67be84de6f76","api":"https://metacan.xera.ac/api/v1/cohort?venue=Current+Protocols"},"results":[{"id":"W3123981312","doi":"10.1002/cpz1.17","title":"Fluorescence Polarization‐Based Measurement of Protein‐Ligand Interaction in Fungal Cell Lysates","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Science Foundation","keywords":"Lysis; Computational biology; Fluorescence anisotropy; Antifungal; Ligand (biochemistry); Small molecule; Fluorescence; Protein–protein interaction; Biology; Chemistry; Combinatorial chemistry; Biochemistry; Microbiology; Receptor","score_opus":0.07075705008452875,"score_gpt":0.35494437521241207,"score_spread":0.2841873251278833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3123981312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90745646,0.0005096379,0.002076728,0.0003162114,0.0001428068,0.088473424,0.000017048198,0.00005771227,0.0009499501],"genre_scores_gemma":[0.9833904,0.000003018324,0.0006137122,0.000017849754,0.000040582894,0.015799513,0.000020580626,0.000011119929,0.00010320738],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984346,0.00010896246,0.0004388411,0.00029649286,0.0005329261,0.00018816751],"domain_scores_gemma":[0.998852,0.000021732565,0.00014421731,0.00034195394,0.0005634058,0.00007665367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043097322,0.0001289851,0.00027392744,0.00008633193,0.000034004228,0.000019809238,0.00007344302,0.000059838043,0.00010035584],"category_scores_gemma":[0.00040757158,0.000115426985,0.000090130234,0.0003454002,0.00005060794,0.00011961302,0.00002971106,0.00024333056,0.000012287072],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004197811,0.0011280761,0.34729475,0.001799525,0.0000057736097,0.000010075742,0.00007057003,0.000004373379,0.64389265,0.00004510299,0.000055448192,0.005273864],"study_design_scores_gemma":[0.0017219108,0.00018325158,0.13462877,0.0027676416,0.000015165706,0.0000012369836,0.000076918695,0.00029612824,0.85850835,0.00004744226,0.0016499249,0.00010327552],"about_ca_topic_score_codex":0.000009304749,"about_ca_topic_score_gemma":0.000033852008,"teacher_disagreement_score":0.21461566,"about_ca_system_score_codex":0.00016771982,"about_ca_system_score_gemma":0.00059431186,"threshold_uncertainty_score":0.47069758},"labels":[],"label_agreement":null},{"id":"W3134922946","doi":"10.1002/cpz1.74","title":"The Conversion of Human Tissue‐Like Inflammatory Monocytes Into Macrophages","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Immune cells in cancer","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Monocyte; CD14; Immunology; CD16; Macrophage; Inflammation; Biology; Cell sorting; Cell biology; In vitro; Flow cytometry; Immune system; CD8; CD3","score_opus":0.02513802460780009,"score_gpt":0.34397795217042026,"score_spread":0.3188399275626202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134922946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7027006,0.13244875,0.000234769,0.00063216605,0.010224832,0.14904186,0.00005139692,0.00037959454,0.004286009],"genre_scores_gemma":[0.8559095,0.00076639344,0.00014706112,0.00010787313,0.00021799268,0.12592751,0.00019431113,0.00008758217,0.016641764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988549,0.0002418396,0.00036465374,0.0002334885,0.000051780447,0.00025338287],"domain_scores_gemma":[0.99892616,0.00012575129,0.00020406736,0.0005324899,0.00019774647,0.000013769691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024503586,0.00014824128,0.000216646,0.000033065822,0.0003495993,0.000023289347,0.00037217885,0.00012610342,0.0006975254],"category_scores_gemma":[0.000059719223,0.00011254912,0.00007992114,0.00009796497,0.00042934628,0.00007040462,0.00028929976,0.00030095957,0.00032631724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073059295,0.00010070254,0.0017348141,0.00039631868,0.000062625906,0.0000039111537,0.00042154986,9.403959e-7,0.95437455,0.00093490916,0.013173039,0.028723588],"study_design_scores_gemma":[0.00057979976,0.000060854614,0.0006008075,0.00012259545,0.000007978652,0.0000035913145,0.000077626246,2.2759674e-7,0.5555811,0.00018419178,0.44270936,0.00007188895],"about_ca_topic_score_codex":0.000007352572,"about_ca_topic_score_gemma":0.0000040029436,"teacher_disagreement_score":0.4295363,"about_ca_system_score_codex":0.000057807458,"about_ca_system_score_gemma":0.00013708793,"threshold_uncertainty_score":0.7637414},"labels":[],"label_agreement":null},{"id":"W3137177646","doi":"10.1002/cpz1.75","title":"Real‐Time Assessment of Mitochondrial Toxicity in HepG2 Cells Using the Seahorse Extracellular Flux Analyzer","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Liver physiology and pathology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"Mitochondrion; Extracellular; Adenosine triphosphate; Cell biology; Biology; Drug; Intracellular; Glycolysis; Flux (metallurgy); Pharmacology; Seahorse; ATP synthase; Biochemistry; Chemistry; Metabolism; Enzyme","score_opus":0.06368164489716091,"score_gpt":0.40306880227699277,"score_spread":0.3393871573798318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3137177646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95819813,0.000116995456,0.0005417981,0.000109879205,0.0003100304,0.039971482,0.000023782475,0.000023162616,0.0007047242],"genre_scores_gemma":[0.8561605,0.00011455796,0.032951757,0.00032174526,0.0031027216,0.10263291,0.00046937662,0.00014261833,0.0041038003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982167,0.0005108022,0.00044488153,0.00034283663,0.00021359648,0.00027116583],"domain_scores_gemma":[0.9989617,0.000111443136,0.0001739291,0.00053341215,0.00014628276,0.00007325267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035464737,0.00016175948,0.00046621374,0.00007022447,0.000057393903,0.000008774411,0.00014469298,0.00014011479,0.00067552924],"category_scores_gemma":[0.000051047617,0.00011672674,0.00015154123,0.00029416158,0.0001572322,0.00006457417,0.000111250236,0.00042292374,0.000020754585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013689672,0.00075410074,0.009342356,0.00020825354,0.000036387613,0.00008507447,0.00018797225,0.000081712824,0.9878085,0.0002494364,0.0004156422,0.0006936141],"study_design_scores_gemma":[0.004997626,0.00061188074,0.08211132,0.001119438,0.0002304634,0.00007297139,0.00010125767,0.006537147,0.8959165,0.0006512406,0.007291587,0.00035851757],"about_ca_topic_score_codex":0.000011625557,"about_ca_topic_score_gemma":0.000003599644,"teacher_disagreement_score":0.10203763,"about_ca_system_score_codex":0.00007559731,"about_ca_system_score_gemma":0.00048084828,"threshold_uncertainty_score":0.73965716},"labels":[],"label_agreement":null},{"id":"W3154046765","doi":"10.1002/cpz1.118","title":"CyTOF: An Emerging Technology for Single‐Cell Proteomics in the Mouse","year":2021,"lang":"en","type":"review","venue":"Current Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institutes of Health","keywords":"Mass cytometry; Proteome; Flow cytometry; Computational biology; Cytometry; Proteomics; Workflow; Biology; Computer science; Cell biology; Bioinformatics; Phenotype; Molecular biology; Genetics; Database","score_opus":0.14314390182049821,"score_gpt":0.4104681668892501,"score_spread":0.26732426506875184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3154046765","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013275072,0.8623498,0.0021572346,0.000027251632,0.00016731855,0.1349194,0.00013763252,0.000030568957,0.000078033605],"genre_scores_gemma":[0.000020107207,0.60972154,0.0014049312,0.00003402537,0.0005508662,0.38690123,0.0011630127,0.0001110229,0.000093296076],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977816,0.0002235403,0.0006492349,0.0007492403,0.00014262486,0.00045375872],"domain_scores_gemma":[0.99860936,0.000020200197,0.00029786406,0.00090634794,0.00010856873,0.00005763063],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040687373,0.00046954834,0.0008581485,0.00014895384,0.000107108615,0.000109956054,0.00093645504,0.0005932035,0.000005052724],"category_scores_gemma":[0.00009860472,0.00035364123,0.00041878174,0.00031475656,0.00008623669,0.0000061816822,0.000117440584,0.00049269875,0.000003374036],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040050087,0.0012934433,0.000021411497,0.015162246,0.00004170062,0.000004576759,0.000058805268,0.0000027659496,0.02699013,0.00016862126,0.00057518744,0.95564103],"study_design_scores_gemma":[0.00047979518,0.0004965378,6.396551e-8,0.0026142967,0.0000767566,0.000015245048,0.000028902074,0.00000653658,0.017144792,0.000036718196,0.9786781,0.00042227583],"about_ca_topic_score_codex":0.0000015759503,"about_ca_topic_score_gemma":0.000010783887,"teacher_disagreement_score":0.9781029,"about_ca_system_score_codex":0.00004955935,"about_ca_system_score_gemma":0.00035931903,"threshold_uncertainty_score":0.9998916},"labels":[],"label_agreement":null},{"id":"W3157437194","doi":"10.1002/cpz1.113","title":"Learned Embeddings from Deep Learning to Visualize and Predict Protein Sets","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vector Institute; University of Toronto","funders":"Deutsche Forschungsgemeinschaft","keywords":"Computer science; Workflow; Artificial intelligence; Pipeline (software); ENCODE; Classifier (UML); Protocol (science); Machine learning; Inference; Natural language processing; Programming language; Biology","score_opus":0.02184703544408889,"score_gpt":0.36336791763347315,"score_spread":0.34152088218938426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157437194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.938684,0.00049834675,0.01486524,0.0003544708,0.00014227336,0.043604616,0.000036056706,0.00013269992,0.0016822852],"genre_scores_gemma":[0.7334429,0.0001315328,0.051103476,0.0010370894,0.0015806201,0.20497555,0.00231997,0.00028377085,0.005125082],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99860996,0.00015199477,0.0003034358,0.00042639303,0.0002144573,0.00029378483],"domain_scores_gemma":[0.99921036,0.000017089953,0.0001320796,0.00033656444,0.0001222208,0.00018169856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002322891,0.00020914279,0.00019645187,0.000036439993,0.00012776615,0.00013717436,0.00018169566,0.00012925883,0.00010974218],"category_scores_gemma":[0.00083067274,0.00020763696,0.00006085936,0.000118993026,0.000042368873,0.000009800011,0.00041922758,0.00031262447,0.00004917585],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045706928,0.00036559423,0.04560076,0.0009958436,0.00015771619,0.000016852398,0.0021292083,0.0008737925,0.62546325,0.00036579423,0.0040298295,0.31954432],"study_design_scores_gemma":[0.0014231411,0.00062466675,0.0041153734,0.00048400406,0.000017613873,0.00001520742,0.00016992702,0.004880822,0.14081526,0.00017020166,0.8467857,0.00049808476],"about_ca_topic_score_codex":0.0000047320273,"about_ca_topic_score_gemma":0.0000053294934,"teacher_disagreement_score":0.84275585,"about_ca_system_score_codex":0.000015492742,"about_ca_system_score_gemma":0.00007578169,"threshold_uncertainty_score":0.8467189},"labels":[],"label_agreement":null},{"id":"W3162122341","doi":"10.1002/cpz1.135","title":"SHIRPA as a Neurological Screening Battery in Mice","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Mitochondrial Function and Pathology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Forelimb; Reflex; Cerebellar Degeneration; Neuroscience; Cerebellum; Motor coordination; Psychology; Medicine; Physical medicine and rehabilitation","score_opus":0.052098438536743286,"score_gpt":0.3488963160164507,"score_spread":0.29679787747970743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162122341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9004496,0.0010293692,0.030914497,0.0017178567,0.002030207,0.055144195,0.00003702425,0.00009002089,0.008587243],"genre_scores_gemma":[0.5821605,0.0002733266,0.014958304,0.016550943,0.0071801245,0.36802197,0.0015838874,0.00020021177,0.009070796],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988905,0.00019848892,0.00019992162,0.0004097359,0.000084299936,0.00021705528],"domain_scores_gemma":[0.9995842,0.000015570206,0.000048013793,0.00023236379,0.000051545154,0.000068312154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012859554,0.000115950366,0.00013136354,0.000032487522,0.000036938094,0.000027341805,0.00012738108,0.00012850089,0.0002775099],"category_scores_gemma":[0.00026194996,0.00011038971,0.00007177255,0.00011403341,0.000033054668,0.0000032197956,0.00014072086,0.00019325838,0.00007608666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060419395,0.00043269768,0.04641629,0.00008060503,0.000013288938,0.00015652218,0.00004406153,0.00006678102,0.90631205,0.0004307533,0.011333568,0.034109198],"study_design_scores_gemma":[0.0015182081,0.000481451,0.009642914,0.0000637503,0.000005111991,0.00014956204,0.000015719612,0.000061074505,0.10235919,0.00018368967,0.8852711,0.00024823257],"about_ca_topic_score_codex":0.0000013628076,"about_ca_topic_score_gemma":0.000009141312,"teacher_disagreement_score":0.87393755,"about_ca_system_score_codex":0.0000036206045,"about_ca_system_score_gemma":0.00007402472,"threshold_uncertainty_score":0.45015615},"labels":[],"label_agreement":null},{"id":"W3162937981","doi":"10.1002/cpz1.134","title":"Intelligent Characterization of Lentil Genetic Resources: Evolutionary History, Genetic Diversity of Germplasm, and the Need for Well‐Represented Collections","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Genome Prairie; European Commission; Saskatchewan Pulse Growers; University of Saskatchewan; Genome Canada; Western Grains Research Foundation; U.S. Department of Agriculture","keywords":"Germplasm; Domestication; Biology; Genetic diversity; Context (archaeology); Selection (genetic algorithm); Genetic architecture; Evolutionary biology; Biotechnology; Genomics; Trait; Genetic variation; Quantitative trait locus; Genetics; Genome; Gene; Agronomy; Population; Computer science","score_opus":0.04736919323034135,"score_gpt":0.24161091949054633,"score_spread":0.19424172626020497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162937981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852936,0.0007963085,0.0002086558,0.00017207868,0.00009134626,0.013238195,0.00007356324,0.000008140854,0.000118081596],"genre_scores_gemma":[0.9860239,0.0004761893,0.00019244138,0.000025351159,0.00008730475,0.012045997,0.000042393705,0.0000016290522,0.0011047922],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992791,0.000079646496,0.00022208855,0.00017731958,0.00013827223,0.00010360975],"domain_scores_gemma":[0.9996164,0.00007665328,0.0001451112,0.000061803265,0.00006976989,0.000030262489],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006559626,0.00008138218,0.00015823849,0.000010027901,0.00027205254,0.000008035413,0.000108833716,0.000029528414,0.0001702449],"category_scores_gemma":[0.000025111243,0.000035246412,0.000084796855,0.00013072895,0.0002757951,0.000020223042,0.00027957695,0.000038090508,0.0000011731336],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011909412,0.0014473738,0.3930107,0.0006570572,0.00019662951,0.0000015070889,0.0025314486,0.000102274134,0.5288155,0.00023116174,0.006062219,0.06575316],"study_design_scores_gemma":[0.0005642125,0.00015832792,0.879302,0.00006159798,0.000043361517,0.000003283961,0.00032921336,0.0002312481,0.0049398225,0.000217777,0.11405956,0.00008958332],"about_ca_topic_score_codex":0.00003993219,"about_ca_topic_score_gemma":0.000018965182,"teacher_disagreement_score":0.5238757,"about_ca_system_score_codex":0.000036313806,"about_ca_system_score_gemma":0.000008829569,"threshold_uncertainty_score":0.20924355},"labels":[],"label_agreement":null},{"id":"W3178045503","doi":"10.1002/cpz1.194","title":"High‐Throughput Computational Analysis of Biofilm Formation from Time‐Lapse Microscopy","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Protocol (science); Visualization; Computer science; Sample (material); Scripting language; Microscopy; Artificial intelligence; Algorithm; Computer graphics (images); Biological system; Chemistry; Optics; Programming language; Biology; Pathology; Physics; Chromatography","score_opus":0.03262206056661174,"score_gpt":0.34841026585249146,"score_spread":0.3157882052858797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178045503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.975055,0.00007398413,0.018003756,0.00007027264,0.0001248993,0.006182939,0.00041963017,0.000018165423,0.000051346735],"genre_scores_gemma":[0.95608014,0.000010088602,0.017474493,0.00009259993,0.00024256794,0.0070624356,0.018806342,0.000019067718,0.00021225102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990393,0.00009746745,0.00036771342,0.0002782271,0.00011736723,0.00009995992],"domain_scores_gemma":[0.99912626,0.000020485018,0.00019358043,0.00031228323,0.00030712222,0.00004027405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013034575,0.000093317,0.00018733784,0.00005372099,0.000050996634,0.000053925916,0.000113145165,0.00006584047,0.00031709168],"category_scores_gemma":[0.00013293211,0.00009862451,0.00012980237,0.00029906884,0.000039823826,0.000011166877,0.00007406969,0.000046453893,0.000027703612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030839805,0.00017171721,0.0037266621,0.000041614054,0.00012550579,2.1597734e-7,0.000047552967,0.00031438583,0.9916864,0.000072948285,0.0009646378,0.0028174876],"study_design_scores_gemma":[0.00068353035,0.00005653816,0.03474941,0.00006455306,0.00015310485,8.035391e-7,0.00002203138,0.003600177,0.9472804,0.000337972,0.012867401,0.00018408356],"about_ca_topic_score_codex":0.000012053478,"about_ca_topic_score_gemma":0.000012408285,"teacher_disagreement_score":0.044406038,"about_ca_system_score_codex":0.000014994046,"about_ca_system_score_gemma":0.00008743038,"threshold_uncertainty_score":0.40217906},"labels":[],"label_agreement":null},{"id":"W3198400109","doi":"10.1002/cpz1.230","title":"Overview of the Therapeutic Applications of Stem Cell–Derived Exosomes: A Research and Commercial Perspective","year":2021,"lang":"en","type":"review","venue":"Current Protocols","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Microvesicles; Exosome; Extracellular vesicles; Endocytic cycle; Reprogramming; Stem cell; Nanotechnology; Computational biology; Cell biology; Biology; Cell; microRNA; Endocytosis; Materials science","score_opus":0.296873406682048,"score_gpt":0.5141811807047717,"score_spread":0.21730777402272372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198400109","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00003016835,0.93017495,0.00009961201,0.000010047437,0.000026523172,0.069343194,0.00014250063,0.0000029613104,0.00017006975],"genre_scores_gemma":[0.0002167561,0.86958617,0.000029588771,0.0000041099383,0.00010552936,0.12987356,0.00005097486,0.000034470195,0.00009885811],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99781877,0.00074400334,0.00047616608,0.00046596187,0.00029324437,0.00020187255],"domain_scores_gemma":[0.99793863,0.00007262634,0.00040517145,0.0010687732,0.00044618052,0.00006860049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004052083,0.00023513794,0.0006883088,0.00005931047,0.000090381516,0.00002265839,0.0006650519,0.00019450233,0.000013985625],"category_scores_gemma":[0.000025263626,0.00016948105,0.00037384458,0.00036788246,0.0004536819,0.0000025758475,0.0006273112,0.00035595454,0.0000020645798],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015678628,0.00075267866,0.00003285202,0.04035554,0.00013943718,4.6176987e-7,0.000104602805,8.4883695e-8,0.0023896426,0.0022964678,0.0002960187,0.95361656],"study_design_scores_gemma":[0.0002506182,0.00011852635,0.000014806142,0.008197474,0.00015505792,0.000003397441,0.0001305323,2.6483656e-7,0.00579683,0.00024738032,0.9849163,0.00016878704],"about_ca_topic_score_codex":0.0000020809002,"about_ca_topic_score_gemma":0.0000017298318,"teacher_disagreement_score":0.98462033,"about_ca_system_score_codex":0.000043490225,"about_ca_system_score_gemma":0.00075138005,"threshold_uncertainty_score":0.69112366},"labels":[],"label_agreement":null},{"id":"W3199046235","doi":"10.1002/cpz1.261","title":"Applying Machine Learning to Stem Cell Culture and Differentiation","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Workflow; Artificial intelligence; Computer science; Stem cell; Stem cell biology; Machine learning; Computational biology; Biology","score_opus":0.017498765016357894,"score_gpt":0.3163032412678454,"score_spread":0.29880447625148754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199046235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.614682,0.009610436,0.1664184,0.0001960751,0.00012440883,0.20155981,0.000033432796,0.00039415204,0.006981257],"genre_scores_gemma":[0.7507693,0.00035968798,0.0032048926,0.0002247554,0.00035661997,0.23660678,0.00072278315,0.000061619416,0.0076935436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925476,0.000066805354,0.00013769427,0.00031942897,0.00009331873,0.00012800095],"domain_scores_gemma":[0.99957097,0.0000030105577,0.000060626226,0.00021004911,0.000089654415,0.000065698914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008342283,0.00011309305,0.000113494185,0.000027022703,0.00007204983,0.0000751849,0.00007978872,0.000058207883,0.000016682472],"category_scores_gemma":[0.000021254142,0.000105140614,0.00005366044,0.000093385446,0.000010343897,0.0000042349784,0.00018793865,0.00011743046,0.00000601316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011647291,0.0000667705,0.0057414672,0.00010425322,0.000010654042,0.0000012924258,0.00006187369,0.000006524356,0.93429184,0.00000968229,0.0010282754,0.05866572],"study_design_scores_gemma":[0.00015729561,0.00006039691,0.0002192649,0.000035389978,0.00001022101,0.0000018608036,0.000021149368,0.000101157115,0.61214334,0.000009345804,0.38714266,0.00009794577],"about_ca_topic_score_codex":0.0000010991291,"about_ca_topic_score_gemma":0.000004818349,"teacher_disagreement_score":0.38611436,"about_ca_system_score_codex":0.000009289573,"about_ca_system_score_gemma":0.000018466173,"threshold_uncertainty_score":0.428751},"labels":[],"label_agreement":null},{"id":"W3201007748","doi":"10.1002/cpz1.243","title":"Fluorescence Microscopy Light Source Review","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Photoacoustic and Ultrasonic Imaging","field":"Engineering","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Chan Zuckerberg Initiative","keywords":"Light-emitting diode; Incandescent light bulb; Arc lamp; Optics; Optoelectronics; Laser; Materials science; Microscopy; Physics","score_opus":0.021022890195588638,"score_gpt":0.3157722743213107,"score_spread":0.2947493841257221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201007748","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017693681,0.3234192,0.2860054,0.0023380043,0.004839926,0.3411226,0.0001296725,0.0049546347,0.035421185],"genre_scores_gemma":[0.0306811,0.027334696,0.024818469,0.0028014889,0.0026189445,0.90624744,0.00023829546,0.0006323125,0.0046272343],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99905473,0.000026497146,0.00024485082,0.00020951241,0.0001553884,0.00030904217],"domain_scores_gemma":[0.99944735,0.0000197673,0.000029318851,0.0003478247,0.000063989166,0.00009177165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012059341,0.000161784,0.00021970992,0.00002047314,0.00005203987,0.000052845662,0.00018475122,0.000030067771,0.00027555585],"category_scores_gemma":[0.00008832436,0.0001570433,0.000075722164,0.00021153053,0.000020687115,0.000105690226,0.000042294818,0.00024782436,0.00018387647],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00000669095,0.00019848101,0.00070544943,0.024883628,0.00004647502,0.000043582673,0.0002769442,0.00021602634,0.43025467,0.00018564927,0.25955597,0.28362647],"study_design_scores_gemma":[0.00022560512,0.000006213446,0.000046381127,0.008866725,0.000017841136,0.00002795773,0.000008107914,0.0017546503,0.1323708,0.000033293163,0.85641724,0.00022521784],"about_ca_topic_score_codex":2.7854526e-7,"about_ca_topic_score_gemma":1.6429794e-7,"teacher_disagreement_score":0.59686124,"about_ca_system_score_codex":0.000052286836,"about_ca_system_score_gemma":0.00006951682,"threshold_uncertainty_score":0.6404039},"labels":[],"label_agreement":null},{"id":"W3201759036","doi":"10.1002/cpz1.238","title":"The Touchscreen‐Based Trial‐Unique, Nonmatching‐To‐Location (TUNL) Task as a Measure of Working Memory and Pattern Separation in Rats and Mice","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Memory and Neural Mechanisms","field":"Neuroscience","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Touchscreen; Working memory; Habituation; Task (project management); Cognition; Psychology; Latency (audio); Computer science; Stimulus (psychology); Spatial memory; Rodent; Neuroscience; Cognitive psychology; Human–computer interaction; Biology","score_opus":0.19888143734343824,"score_gpt":0.41328193484326115,"score_spread":0.2144004974998229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201759036","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92877156,0.0001035007,0.0030200437,0.0005977217,0.00023838927,0.06703449,0.000005965906,0.000034217454,0.00019414166],"genre_scores_gemma":[0.96359617,0.000011828953,0.00005897244,0.00032252428,0.000057526035,0.035888404,0.0000023851521,0.0000120273535,0.00005018289],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998149,0.00061720127,0.00035086618,0.0004072114,0.00029015195,0.00018561768],"domain_scores_gemma":[0.999043,0.0003765298,0.00017785386,0.00025613423,0.00006665544,0.00007985773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006277927,0.00014223614,0.0001930746,0.00006586618,0.00017818811,0.00012146027,0.00014986533,0.00005326728,0.000008660002],"category_scores_gemma":[0.000793609,0.00011262533,0.000028653945,0.00035843338,0.000044318862,0.00015551131,0.00007867688,0.0002049617,0.00000434488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019149876,0.00016059674,0.00017774153,0.00018896698,0.0000016588422,0.000008279415,0.00054838794,0.000032691096,0.89452505,0.0003032358,0.000043813005,0.10209456],"study_design_scores_gemma":[0.0039003317,0.00027218327,0.0002257459,0.00075415656,0.0000058620853,0.000006970279,0.000054669348,0.0010803087,0.9920448,0.00059103064,0.0009308199,0.00013309765],"about_ca_topic_score_codex":0.0000027979304,"about_ca_topic_score_gemma":0.000046785215,"teacher_disagreement_score":0.10196146,"about_ca_system_score_codex":0.000020964853,"about_ca_system_score_gemma":0.00011245078,"threshold_uncertainty_score":0.45927277},"labels":[],"label_agreement":null},{"id":"W3203197823","doi":"10.1002/cpz1.263","title":"Visualization of the Skeletal Muscle Stem Cell Niche in Fiber Bundles","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Skeletal muscle; Cell biology; Extracellular matrix; Biology; Stem cell; Mesenchymal stem cell; Basal lamina; Pathology; Anatomy; Ultrastructure; Medicine","score_opus":0.024419679332131527,"score_gpt":0.32417919269312934,"score_spread":0.2997595133609978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203197823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847802,0.0006135377,0.00017784575,0.00004127681,0.00010649391,0.0125893485,0.00001109749,0.000005875584,0.001674322],"genre_scores_gemma":[0.9900504,0.000018630137,0.000017458506,0.000043617365,0.000047665333,0.009409807,0.000046864152,0.000009143558,0.00035646636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993433,0.00012500503,0.00016251887,0.00018850784,0.00006731777,0.000113346025],"domain_scores_gemma":[0.9995814,0.000007276512,0.00007665292,0.00026242944,0.00005377139,0.0000184874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007474423,0.00007610201,0.00008647721,0.000012043704,0.000030428084,0.000006090889,0.00012959982,0.000072579045,0.000056137756],"category_scores_gemma":[0.000021476326,0.000060040897,0.00007141248,0.00010912188,0.000053297477,0.0000029140838,0.0001156727,0.00006172869,0.0000056595504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006185932,0.0009699252,0.023732718,0.00050622184,0.000014037495,5.654683e-7,0.00014016652,0.00022672323,0.941032,0.0006131082,0.0018544197,0.030848272],"study_design_scores_gemma":[0.0012168136,0.0001452439,0.07241877,0.00012734997,0.000007625455,8.041132e-7,0.00008490458,0.000049882347,0.7502446,0.00029705613,0.17522383,0.00018308658],"about_ca_topic_score_codex":0.0000016181949,"about_ca_topic_score_gemma":0.000015152831,"teacher_disagreement_score":0.19078735,"about_ca_system_score_codex":0.0000048352117,"about_ca_system_score_gemma":0.00009808571,"threshold_uncertainty_score":0.24483967},"labels":[],"label_agreement":null},{"id":"W3206080534","doi":"10.1002/cpz1.267","title":"Long‐Lived Organotypic Slice Culture Model of the Rat Basolateral Amygdala","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"National Institute of Mental Health","keywords":"Basolateral amygdala; Neuroscience; Neocortex; Amygdala; In vivo; Biology; Psychology; Medicine","score_opus":0.1607801532533126,"score_gpt":0.41953389831869586,"score_spread":0.2587537450653833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3206080534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9592361,0.000033621032,0.00019087069,0.00063431077,0.00069914147,0.03854374,0.000028546718,0.00007569522,0.0005579963],"genre_scores_gemma":[0.97064006,0.00005074209,0.000022836448,0.0012986767,0.00010628955,0.022765623,7.6248523e-7,0.000030650215,0.005084334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99747854,0.0005272277,0.0002985178,0.0006429112,0.00058506435,0.000467721],"domain_scores_gemma":[0.9988797,0.00010132603,0.00013940678,0.00058677944,0.00016810867,0.00012473445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016739022,0.00019037923,0.0002166679,0.00005044237,0.00031341685,0.00009423511,0.0010135525,0.0000639448,0.0001557246],"category_scores_gemma":[0.0006097292,0.00012608031,0.00013817054,0.0008395025,0.00038951938,0.00027149604,0.0005856438,0.00063534896,0.00006311084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055722572,0.00028587514,0.0016762372,0.00010138349,0.0000011569371,0.000020298488,0.0001703515,0.00012232829,0.995223,0.00026633585,0.0014776624,0.000599635],"study_design_scores_gemma":[0.0006749797,0.000064081934,0.0005822609,0.00007964332,0.0000070843794,0.000028868453,0.0000055631285,0.0037587583,0.987996,0.000237485,0.0064345696,0.00013073995],"about_ca_topic_score_codex":3.2498932e-7,"about_ca_topic_score_gemma":6.115336e-7,"teacher_disagreement_score":0.015778117,"about_ca_system_score_codex":0.000027297496,"about_ca_system_score_gemma":0.0003961099,"threshold_uncertainty_score":0.51414055},"labels":[],"label_agreement":null},{"id":"W3207168114","doi":"10.1002/cpz1.268","title":"Evaluating Sequential Response Learning in the Rodent Operant Touchscreen System","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Receptor Mechanisms and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Touchscreen; Task (project management); Computer science; Operant conditioning; Sequence (biology); Sequence learning; Neuroscience; Artificial intelligence; Psychology; Human–computer interaction; Biology; Reinforcement; Engineering","score_opus":0.10125414968988601,"score_gpt":0.4168865135670214,"score_spread":0.3156323638771354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207168114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9676435,0.0005913504,0.006260685,0.000121386496,0.0002274153,0.02488513,0.000006740163,0.000025741549,0.00023805087],"genre_scores_gemma":[0.9565308,0.000008950886,0.0007104107,0.000054327124,0.0003951329,0.041989166,0.00006761195,0.000022883092,0.00022071764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99760175,0.0012081544,0.0002966441,0.00035832418,0.00028863957,0.00024647426],"domain_scores_gemma":[0.9994159,0.000031165426,0.00008759036,0.00031321772,0.00011093116,0.000041248786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021028195,0.00013522342,0.00014175916,0.000027150194,0.0001417044,0.00011590029,0.000243815,0.000076258184,0.00006265758],"category_scores_gemma":[0.00028166128,0.00010205431,0.00009663226,0.00012015885,0.000016805772,0.0000049525966,0.00013255056,0.00022557512,0.00001199801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035061667,0.00007143677,0.00048650775,0.000097681695,0.000011750688,0.000016875554,0.00023840879,0.0014534728,0.9854274,0.00020357543,0.0000824751,0.011559801],"study_design_scores_gemma":[0.0020108682,0.000728928,0.0007097808,0.0007604864,0.000018379425,0.000073160256,0.0016029237,0.0039090263,0.90345675,0.000025513182,0.08636193,0.00034225368],"about_ca_topic_score_codex":0.000006330673,"about_ca_topic_score_gemma":0.0000063576895,"teacher_disagreement_score":0.08627946,"about_ca_system_score_codex":0.000036336278,"about_ca_system_score_gemma":0.00022491906,"threshold_uncertainty_score":0.4161654},"labels":[],"label_agreement":null},{"id":"W3207778339","doi":"10.1002/cpz1.253","title":"Measuring Amyloid‐β Peptide Concentrations in Murine Brain with Improved ELISA Assay","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Alzheimer's disease research and treatments","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Intertek (Canada); University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Homogenization (climate); Guanidine; Peptide; Chemistry; Genetically modified mouse; Endogeny; Molecular biology; Senile plaques; Biochemistry; Transgene; Alzheimer's disease; Biology; Medicine; Internal medicine; Disease","score_opus":0.08905182314271912,"score_gpt":0.37978385448265395,"score_spread":0.29073203133993486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3207778339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5086311,0.0067512,0.0014694534,0.0048043784,0.00020594815,0.4649634,0.0002821486,0.0004748928,0.012417458],"genre_scores_gemma":[0.8030831,0.000027155802,0.00068448205,0.00012293039,0.00018374778,0.19521436,0.00023854934,0.00004286297,0.00040277466],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982627,0.00014193503,0.00027892133,0.00039917976,0.00045216674,0.0004650708],"domain_scores_gemma":[0.9988322,0.00007708174,0.000067149624,0.0003943085,0.00024973112,0.00037951287],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022918147,0.00019418607,0.00028985372,0.00008325652,0.00008340223,0.00006668488,0.00008088159,0.00004259535,0.00030902665],"category_scores_gemma":[0.00023419234,0.00015206369,0.00008079463,0.00035292757,0.00007270802,0.00016666175,0.000057356905,0.0002953807,0.000060723858],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013826053,0.0056333635,0.9484916,0.0011615547,0.002044074,0.001136352,0.00026755154,0.000013071694,0.008892315,0.00044706438,0.002046121,0.028484326],"study_design_scores_gemma":[0.055919994,0.0022523499,0.71042174,0.008324034,0.00053043314,0.00025343016,0.00045833763,0.0019157763,0.1353474,0.0004369912,0.08288543,0.0012541193],"about_ca_topic_score_codex":0.000018390328,"about_ca_topic_score_gemma":0.00009029302,"teacher_disagreement_score":0.294452,"about_ca_system_score_codex":0.00020669546,"about_ca_system_score_gemma":0.0010118986,"threshold_uncertainty_score":0.6200977},"labels":[],"label_agreement":null},{"id":"W3214583520","doi":"10.1002/cpz1.288","title":"Three‐Dimensional Fruit Tissue Habitats for Culturing <i>Caenorhabditis elegans</i>","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canada Foundation for Innovation","keywords":"Caenorhabditis elegans; Biology; Habitat; Ecology; Genetics; Gene","score_opus":0.03586828056769248,"score_gpt":0.32766012132890027,"score_spread":0.2917918407612078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3214583520","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38342392,0.009566086,0.41757092,0.0019316034,0.0038155543,0.18108523,0.0009349934,0.00028519542,0.0013864929],"genre_scores_gemma":[0.5582263,0.00020716894,0.07760166,0.0024170086,0.009253997,0.34126192,0.0046299594,0.00049229525,0.005909694],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983957,0.00003795446,0.00030649058,0.00061599776,0.00022255603,0.00042133196],"domain_scores_gemma":[0.99891543,0.000016016418,0.00010472341,0.00050284225,0.00031414113,0.00014683977],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015947659,0.00025417682,0.00022854307,0.000025410136,0.00018912552,0.0000905126,0.0002592345,0.00015129206,0.00007282946],"category_scores_gemma":[0.00010808872,0.00025780965,0.00014170134,0.00007294259,0.00007122374,0.000008267489,0.00019405835,0.00014100975,0.00003483832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007710379,0.0004527703,0.0024298434,0.00046899752,0.00007730638,0.000010811677,0.000146278,0.0002602184,0.9226664,0.00053492025,0.046716988,0.026158415],"study_design_scores_gemma":[0.0007854368,0.0002018277,0.00073131867,0.00007831572,0.000017813873,0.000020796813,0.0000077999875,0.00006588453,0.548178,0.00081526244,0.44882908,0.00026844413],"about_ca_topic_score_codex":0.0000038497788,"about_ca_topic_score_gemma":0.00007816952,"teacher_disagreement_score":0.4021121,"about_ca_system_score_codex":0.000021389867,"about_ca_system_score_gemma":0.00018825347,"threshold_uncertainty_score":0.9999874},"labels":[],"label_agreement":null},{"id":"W4200267551","doi":"10.1002/cpz1.320","title":"Using hiPSC‐CMs to Examine Mechanisms of Catecholaminergic Polymorphic Ventricular Tachycardia","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cardiac electrophysiology and arrhythmias","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Libin Cardiovascular Institute of Alberta; University of British Columbia; BC Children's Hospital; University of Calgary; Simon Fraser University","funders":"Canadian Institutes of Health Research; Steno Diabetes Center Aarhus; Stem Cell Network","keywords":"Catecholaminergic polymorphic ventricular tachycardia; Catecholaminergic; Internal medicine; Cardiology; Medicine; Ventricular tachycardia; Dopamine; Ryanodine receptor 2","score_opus":0.06930537139162403,"score_gpt":0.3678537830004621,"score_spread":0.2985484116088381,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200267551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9144739,0.0014391103,0.014869374,0.00036827303,0.0006089271,0.06754359,0.000044075092,0.00013057281,0.0005222169],"genre_scores_gemma":[0.9691305,0.000011991141,0.0023896897,0.00020313893,0.0005605301,0.027321883,0.00008978892,0.00004873808,0.00024373113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983706,0.00012842915,0.00038504569,0.00042363117,0.00030983106,0.00038247491],"domain_scores_gemma":[0.99883616,0.00003376279,0.00012790796,0.0005600591,0.00024843987,0.0001936425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021300677,0.0002177703,0.00061645114,0.00014936278,0.00006815342,0.000013389116,0.00009319687,0.00011899302,0.00011431294],"category_scores_gemma":[0.00016840093,0.00019773775,0.0003002502,0.00065488316,0.00004472559,0.00006114542,0.00012373534,0.00030894886,0.000041069652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027419848,0.00048991834,0.0006466953,0.0005954321,0.00016029661,0.0021302393,0.000063752166,0.00022498207,0.9817686,0.0035427634,0.00043849275,0.009664649],"study_design_scores_gemma":[0.0023511848,0.00065233157,0.0040789954,0.0010835152,0.0002342555,0.0018013904,0.000033359953,0.00017110212,0.9782875,0.0013641457,0.009580587,0.00036163552],"about_ca_topic_score_codex":0.0000043966447,"about_ca_topic_score_gemma":3.1942895e-7,"teacher_disagreement_score":0.054656647,"about_ca_system_score_codex":0.000091702466,"about_ca_system_score_gemma":0.00028514696,"threshold_uncertainty_score":0.8063511},"labels":[],"label_agreement":null},{"id":"W4200340982","doi":"10.1002/cpz1.322","title":"Simple, Economical Methods for the Culture of Green Algae for Energy Harvesting from Photosynthesis in a Microfluidic Environment","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Microbial Fuel Cells and Bioremediation","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint John Regional Hospital; Dalhousie University; Concordia University","funders":"","keywords":"Chlamydomonas reinhardtii; Computer science; Photosynthesis; Biochemical engineering; Protocol (science); Process engineering; Nanotechnology; Environmental science; Chemistry; Materials science; Engineering; Biochemistry","score_opus":0.045436729118950865,"score_gpt":0.3394194618679055,"score_spread":0.29398273274895464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200340982","genre_codex":"methods","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1012928,0.006971002,0.5947892,0.0011746804,0.0007536242,0.2922341,0.0020875616,0.00008563141,0.0006114021],"genre_scores_gemma":[0.06704924,0.001644585,0.23584093,0.00095085264,0.0012823032,0.6905338,0.0010959064,0.00017266686,0.0014296833],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989008,0.00011049591,0.0003601541,0.00034572248,0.00007275825,0.00021007999],"domain_scores_gemma":[0.9991732,0.00038198638,0.00016086423,0.00022901117,0.000008007565,0.000046886154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040957326,0.00013250601,0.00020444467,0.000012844548,0.00007188587,0.000027261469,0.00022698508,0.00007111795,0.00057704886],"category_scores_gemma":[0.00009763028,0.00009650033,0.00012966064,0.00006701722,0.00007431692,0.00008003285,0.00014317114,0.00006517251,0.0000067069222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004779934,0.0001285754,0.0023280492,0.000060610455,0.000010440476,1.319307e-7,0.00024635444,0.000036159938,0.73062116,0.000022893246,0.0016600185,0.26483777],"study_design_scores_gemma":[0.00046449338,0.000032283213,0.001977858,0.000034898494,0.000015610636,2.5656982e-7,0.000037979178,0.0015894094,0.53330314,0.00087429996,0.46156973,0.00010004588],"about_ca_topic_score_codex":0.00046988152,"about_ca_topic_score_gemma":0.0001139309,"teacher_disagreement_score":0.4599097,"about_ca_system_score_codex":0.00011170355,"about_ca_system_score_gemma":0.000021308215,"threshold_uncertainty_score":0.63182807},"labels":[],"label_agreement":null},{"id":"W4200411527","doi":"10.1002/cpz1.325","title":"Automated Quantification of Subcellular Particles in Myogenic Progenitors","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Association of Occupational Therapists; McGill University","funders":"","keywords":"Subcellular localization; Cell biology; Ribonucleoprotein; Fluorescence microscope; Immunofluorescence; Immunocytochemistry; Biology; Cytoplasm; Protein subcellular localization prediction; Stress granule; Messenger RNA; Microscopy; Chemistry; Biophysics; RNA; Biochemistry; Fluorescence; Translation (biology); Pathology; Antibody; Gene; Immunology","score_opus":0.04129098570462149,"score_gpt":0.35566254525123797,"score_spread":0.3143715595466165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200411527","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907456,0.00058697874,0.00022946224,0.000029144818,0.000056845118,0.008278409,0.0000061902865,0.000022015673,0.00004536321],"genre_scores_gemma":[0.9842311,0.000019036459,0.00010072887,0.000009131681,0.000031393385,0.015449869,0.00013740957,0.000007802156,0.0000135334685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999221,0.000108549255,0.00023122328,0.00023253963,0.000064218686,0.00014244758],"domain_scores_gemma":[0.9995318,0.0000060177053,0.00008210469,0.00026939373,0.000079645964,0.000031046686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011470198,0.000079846024,0.00010867333,0.000024302213,0.000022243325,0.0000064117153,0.00009680419,0.000073480136,0.000019121811],"category_scores_gemma":[0.00008849299,0.00008027493,0.000059528036,0.00013978008,0.000057554942,0.0000033786134,0.000045619887,0.000051208914,0.000008183137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008974261,0.0003556504,0.022890337,0.000114547736,0.000011789112,8.3840206e-7,0.000024556786,0.0000818792,0.97190887,0.00023950705,0.000282658,0.003999649],"study_design_scores_gemma":[0.0005862346,0.00008954049,0.02148061,0.000045164772,0.000004709578,0.0000010797395,0.00003011964,0.00044592752,0.97140586,0.00021867466,0.0055939243,0.000098128345],"about_ca_topic_score_codex":0.0000021078986,"about_ca_topic_score_gemma":0.000009431172,"teacher_disagreement_score":0.0071714604,"about_ca_system_score_codex":0.0000048966244,"about_ca_system_score_gemma":0.00012002613,"threshold_uncertainty_score":0.32735163},"labels":[],"label_agreement":null},{"id":"W4200496366","doi":"10.1002/cpz1.331","title":"Drug‐releasing Microspheres for Stem Cell Differentiation","year":2021,"lang":"en","type":"article","venue":"Current Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Victoria","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Michael Smith Health Research BC","keywords":"Drug delivery; Tissue engineering; Stem cell; Biocompatibility; Nanotechnology; Materials science; Regeneration (biology); Microsphere; Biomedical engineering; Chemistry; Cell biology; Chemical engineering; Biology","score_opus":0.04635642267420692,"score_gpt":0.3425283705947707,"score_spread":0.2961719479205638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200496366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47413436,0.0037270302,0.28994367,0.00032447625,0.0027502447,0.22244388,0.00012697346,0.0017810409,0.004768345],"genre_scores_gemma":[0.6005899,0.00011594788,0.009719274,0.000030693252,0.001043211,0.38547778,0.0001549414,0.00021077348,0.0026575155],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888986,0.00004163746,0.00024285135,0.00021916712,0.0002539828,0.0003524707],"domain_scores_gemma":[0.9993565,0.00013867806,0.000031562093,0.00024421958,0.00011978402,0.000109266475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013586479,0.0001285792,0.00014782081,0.000033798395,0.00007384901,0.00013838666,0.00018713763,0.000056769284,0.00013690561],"category_scores_gemma":[0.000053965858,0.00012833571,0.00008254451,0.00017250948,0.000027516195,0.000077389595,0.00007701258,0.00021450383,0.00006239244],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028726465,0.0002975622,0.0033744501,0.007022157,0.000036012545,0.000003775551,0.0003123058,0.00030606435,0.20120145,0.00049982034,0.02555261,0.76136506],"study_design_scores_gemma":[0.001063436,0.000024585901,0.00216317,0.00062666176,0.000008982686,0.0000013159656,0.000046945177,0.015291977,0.64774287,0.00044880214,0.3323057,0.00027557305],"about_ca_topic_score_codex":5.044383e-7,"about_ca_topic_score_gemma":0.0000012092191,"teacher_disagreement_score":0.7610895,"about_ca_system_score_codex":0.00008560578,"about_ca_system_score_gemma":0.000060654766,"threshold_uncertainty_score":0.52333784},"labels":[],"label_agreement":null},{"id":"W4205844656","doi":"10.1002/cpz1.354","title":"Ethical, Legal, and Social Implications (ELSI) Research: Methods and Approaches","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Biomedical Ethics and Regulation","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Engineering ethics; Field (mathematics); Ethical issues; Point (geometry); Sociology; Political science; Management science; Engineering","score_opus":0.6071859814342039,"score_gpt":0.6031181375062187,"score_spread":0.004067843927985204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205844656","genre_codex":"commentary","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0143654505,0.0029425158,0.021881124,0.6752901,0.00031207237,0.28030163,0.00010349291,0.0002870106,0.004516605],"genre_scores_gemma":[0.37168553,0.00008060359,0.021856373,0.001423388,0.00087781297,0.6031838,0.0001511625,0.000061547915,0.00067976315],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981594,0.00067940075,0.00020653981,0.00030252064,0.00044237435,0.00020976558],"domain_scores_gemma":[0.99934524,0.00019925577,0.00005349227,0.00016984309,0.000096772455,0.00013540813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036912132,0.00008119405,0.00017415918,0.00011943434,0.0008596125,0.00005755625,0.000081852304,0.00016443647,0.00007260087],"category_scores_gemma":[0.0001396857,0.00006612224,0.000036256763,0.00030675926,0.0010991533,0.00003840181,0.0003305816,0.0019240661,0.0000012428288],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081225044,0.0002809851,0.0002369851,0.0006412491,0.000016384434,9.341334e-7,0.0012506592,2.5418385e-7,0.0047356607,0.27842307,0.0043450086,0.7099876],"study_design_scores_gemma":[0.0009476729,0.00030922578,0.013238116,0.0000667844,0.000020069185,0.00003248041,0.00031975255,0.0005924965,0.0002490015,0.03292422,0.95119804,0.00010216327],"about_ca_topic_score_codex":0.000004997848,"about_ca_topic_score_gemma":6.704382e-7,"teacher_disagreement_score":0.946853,"about_ca_system_score_codex":0.00005209021,"about_ca_system_score_gemma":0.00022435348,"threshold_uncertainty_score":0.83592165},"labels":[],"label_agreement":null},{"id":"W4206088707","doi":"10.1002/cpz1.341","title":"Stage‐Specific Generation of Human Pluripotent Stem Cell Derived Lung Models to Measure CFTR Function","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Neonatal Respiratory Health Research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Induced pluripotent stem cell; Cell biology; Progenitor cell; Endoderm; Stem cell; Biology; Embryonic stem cell; Cystic fibrosis; Matrigel; Directed differentiation; Cellular differentiation; Immunology; Cancer research; Angiogenesis","score_opus":0.3367896173674693,"score_gpt":0.42922242418525447,"score_spread":0.09243280681778515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206088707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5275202,0.003995014,0.026417192,0.00033252107,0.00061139505,0.43985784,0.0001608959,0.0001889228,0.0009160216],"genre_scores_gemma":[0.6089635,0.000012928316,0.00018460765,0.00016774592,0.00037461295,0.38904166,0.00009130576,0.00006498896,0.0010986465],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99667627,0.00033303263,0.0005958391,0.00048997405,0.0014996424,0.00040527506],"domain_scores_gemma":[0.99845564,0.000024434614,0.00019645538,0.0005757122,0.00039270503,0.00035505148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009746887,0.00018783295,0.00033185954,0.00023105895,0.00036553908,0.000028431934,0.00021159109,0.000051478288,0.000533816],"category_scores_gemma":[0.000013195538,0.00018499268,0.000104383245,0.00043194924,0.00003301752,0.00013827256,0.00022318475,0.0005624832,0.000024724499],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017288468,0.0009650013,0.0005264383,0.0036504648,0.000024561468,0.000015668189,0.0007904177,0.0036261252,0.84345144,0.00083220133,0.004866951,0.1395219],"study_design_scores_gemma":[0.0077832127,0.0065989797,0.0019685396,0.00062289595,0.000048802944,0.0000063690395,0.00052457623,0.011997525,0.2586062,0.000106963256,0.7111994,0.0005365517],"about_ca_topic_score_codex":0.000009528665,"about_ca_topic_score_gemma":0.000003867904,"teacher_disagreement_score":0.70633245,"about_ca_system_score_codex":0.00069541315,"about_ca_system_score_gemma":0.0005006417,"threshold_uncertainty_score":0.75437826},"labels":[],"label_agreement":null},{"id":"W4206103937","doi":"10.1002/cpz1.337","title":"Measuring Play Fighting in Rats: A Multilayered Approach","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Neuroendocrine regulation and behavior","field":"Psychology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"","keywords":"Psychology; Competition (biology); Key (lock); Juvenile; Ecology; Biology","score_opus":0.21464437585168034,"score_gpt":0.4164356186482102,"score_spread":0.20179124279652988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206103937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6841653,0.00021381312,0.00036992048,0.00043446734,0.0017160423,0.29961812,0.00007203402,0.0005558727,0.012854436],"genre_scores_gemma":[0.5320701,7.252767e-8,0.00013179962,0.00003035183,0.000089276495,0.46630272,0.000014875651,0.000026517879,0.0013342935],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981576,0.00035853148,0.00037908176,0.00043204872,0.0003041981,0.00036851226],"domain_scores_gemma":[0.99939215,0.00003562856,0.00013327063,0.0003470926,0.000023376626,0.000068484216],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025416078,0.000155441,0.00019535435,0.00019868962,0.00016509977,0.000034427714,0.0002879349,0.000018005698,0.0017502776],"category_scores_gemma":[0.000023446608,0.00015794007,0.00007903503,0.0003619834,0.000020840305,0.00007715298,0.00017862629,0.00048644526,0.00006496608],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013730222,0.014954973,0.35736904,0.0006227249,0.00006206138,0.0004160201,0.012031695,0.003132458,0.020940522,0.0067640455,0.035689346,0.5466441],"study_design_scores_gemma":[0.0068455962,0.00026248302,0.08957139,0.00011865028,0.0000148470735,0.00014524609,0.00083711883,0.001596474,0.0023824407,0.000070865164,0.8975091,0.0006457947],"about_ca_topic_score_codex":0.000008354636,"about_ca_topic_score_gemma":0.0000016526369,"teacher_disagreement_score":0.86181974,"about_ca_system_score_codex":0.00010290381,"about_ca_system_score_gemma":0.0000359193,"threshold_uncertainty_score":0.99916226},"labels":[],"label_agreement":null},{"id":"W4206998550","doi":"10.1002/cpz1.349","title":"Confocal Imaging of Developing Leaves","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Photosynthetic Processes and Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Primordium; Biology; Arabidopsis; Botany; Inflorescence; Biochemistry","score_opus":0.029368110463466927,"score_gpt":0.3360025144476659,"score_spread":0.30663440398419894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206998550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6377245,0.0022098834,0.21213129,0.00073946454,0.0016286764,0.13814852,0.00031524996,0.00014117434,0.0069612404],"genre_scores_gemma":[0.9492358,0.000010255459,0.00040609538,0.00009539103,0.00006774941,0.050059203,0.000032447617,0.00001529223,0.00007777786],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992883,0.00003546167,0.00017377152,0.0002015933,0.00014,0.00016087735],"domain_scores_gemma":[0.99962854,0.000004121985,0.000099236175,0.00018433813,0.000049601043,0.000034152625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017452924,0.0000874926,0.00010284375,0.000028004933,0.00009814066,0.000009289623,0.00023043712,0.000015173391,0.00006137522],"category_scores_gemma":[0.0000340544,0.00008792767,0.00005343202,0.00006639713,0.000034982397,0.0000023581538,0.00030272943,0.00007907848,0.0000017099505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007698149,0.00010182149,0.0006164904,0.00016012907,0.000011181657,0.0000011659973,0.000057031055,0.000016466061,0.9722969,0.0035721927,0.0004071831,0.022682436],"study_design_scores_gemma":[0.00029350483,0.00009706053,0.000039997805,0.000032411906,0.0000028803831,0.000011500296,0.000066570334,0.000039037106,0.73884416,0.0006467332,0.25982654,0.0000996324],"about_ca_topic_score_codex":0.0000014941775,"about_ca_topic_score_gemma":3.80928e-7,"teacher_disagreement_score":0.31151128,"about_ca_system_score_codex":0.000013661307,"about_ca_system_score_gemma":0.00018509524,"threshold_uncertainty_score":0.35855862},"labels":[],"label_agreement":null},{"id":"W4210406281","doi":"10.1002/cpz1.356","title":"Assessment of Muscle Function Following hiPSC‐Derived Myoblast Transplantation in Dystrophic Mice","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Duchenne muscular dystrophy; Induced pluripotent stem cell; Transplantation; Myocyte; Dystrophin; Muscular dystrophy; Skeletal muscle; Biology; Stem cell; Muscle disorder; Medicine; Bioinformatics; Cancer research; Cell biology; Internal medicine; Gene; Genetics; Embryonic stem cell; Anatomy","score_opus":0.021214410066177084,"score_gpt":0.3273522269686198,"score_spread":0.30613781690244274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210406281","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857602,0.00007085286,0.00227921,0.000018800982,0.00016262877,0.011451079,0.000020439678,0.000007919508,0.00022883133],"genre_scores_gemma":[0.95878977,0.000008839239,0.000073078416,0.000027219125,0.00003252795,0.04080757,0.00024391882,0.0000089747155,0.000008121323],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911124,0.00016395927,0.00021526047,0.00024466548,0.00012107408,0.0001437802],"domain_scores_gemma":[0.9996998,0.000008514344,0.00009823316,0.00015034,0.000018781895,0.000024353361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001870338,0.00009479387,0.00011871121,0.00005300474,0.00008587231,0.0000047759263,0.0001202435,0.000041175852,0.000052612286],"category_scores_gemma":[0.0000095050145,0.000103554055,0.00008800173,0.000106849286,0.000024622617,0.000005970297,0.000052592062,0.00013836396,8.0544675e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002921165,0.00032673468,0.008978068,0.00015308749,0.00001832719,0.0000011570601,0.000060366754,0.0015479296,0.98425484,0.00013249984,0.000064004795,0.004170853],"study_design_scores_gemma":[0.008117072,0.0032610463,0.89925325,0.00018980773,0.00006416674,0.000004164702,0.000529782,0.0007157729,0.06737657,0.0008566975,0.019033084,0.0005985875],"about_ca_topic_score_codex":0.000006768428,"about_ca_topic_score_gemma":0.000009996001,"teacher_disagreement_score":0.9168783,"about_ca_system_score_codex":0.000020114794,"about_ca_system_score_gemma":0.00008712417,"threshold_uncertainty_score":0.42228118},"labels":[],"label_agreement":null},{"id":"W4210478208","doi":"10.1002/cpz1.353","title":"Efficient Gamma‐Retroviral Transduction of Primary Human Skin Cells Using the EF‐c Peptide as a Transduction Enhancer","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children; Université Laval","funders":"","keywords":"Transduction (biophysics); Biology; Keratinocyte; Fibroblast; Cell biology; Ex vivo; Genetic enhancement; Signal transduction; Molecular biology; Dermal fibroblast; Stem cell; Flow cytometry; Cell culture; In vitro; Gene; Biochemistry; Genetics","score_opus":0.0424844896185379,"score_gpt":0.36329911581535157,"score_spread":0.32081462619681367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210478208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96878684,0.0003594584,0.0010423976,0.000050895556,0.00019471285,0.029374141,0.00003941772,0.000013614208,0.00013852285],"genre_scores_gemma":[0.95896316,0.000015612055,0.000078227975,0.000030176101,0.00036241816,0.04023061,0.00007967465,0.000038998205,0.00020110195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802125,0.00039933223,0.00033897662,0.0004174015,0.0005081707,0.00031486084],"domain_scores_gemma":[0.9991187,0.000007652945,0.00015124494,0.000577122,0.00008773065,0.000057537996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000661524,0.00018090499,0.0001814646,0.00007957579,0.00036074148,0.000023905068,0.00045945356,0.000056221867,0.000309033],"category_scores_gemma":[0.0000066246243,0.00015654533,0.00020394217,0.00023759926,0.00019510798,0.0000044491353,0.0001250471,0.0003121075,0.000004059746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015582092,0.00038557826,0.000027554033,0.00013084161,0.00003153912,5.478548e-7,0.0002850039,0.0047344337,0.9797061,0.000015083303,0.00016036928,0.01296476],"study_design_scores_gemma":[0.0009881997,0.003034728,0.000049256494,0.000032535612,0.000018326713,0.000008335595,0.00011154279,0.00032040713,0.9707205,0.000033735552,0.024506334,0.00017606143],"about_ca_topic_score_codex":0.000016852027,"about_ca_topic_score_gemma":0.0000087281205,"teacher_disagreement_score":0.024345964,"about_ca_system_score_codex":0.00012549701,"about_ca_system_score_gemma":0.00023352083,"threshold_uncertainty_score":0.6383733},"labels":[],"label_agreement":null},{"id":"W4212973017","doi":"10.1002/cpz1.369","title":"Post‐Stroke Hemiplegic Rodent Evaluation: A Framework for Assessing Forelimb Movement Quality Using Kinematics","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Stroke Rehabilitation and Recovery","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Rehabilitation Institute; University Health Network","funders":"","keywords":"Forelimb; Kinematics; Physical medicine and rehabilitation; Stroke (engine); Computer science; Work (physics); Neuroscience; Psychology; Medicine; Engineering; Physics","score_opus":0.20726134632047152,"score_gpt":0.506077776956597,"score_spread":0.2988164306361254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4212973017","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43637663,0.00062550785,0.1710205,0.0014572409,0.0021881664,0.38731083,0.00029998267,0.00017234549,0.0005488088],"genre_scores_gemma":[0.16893807,0.0000041037943,0.106779374,0.0010282866,0.0010818492,0.72153795,0.0002688026,0.000081740305,0.00027984864],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99700314,0.00028343295,0.0007687203,0.00039661647,0.0012200199,0.00032805608],"domain_scores_gemma":[0.99793416,0.00048286616,0.00042450163,0.00047800379,0.00054291956,0.00013752644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021360333,0.00020655863,0.0004287717,0.00017026762,0.00038573216,0.00008939371,0.0001401418,0.00006682717,0.0007002067],"category_scores_gemma":[0.0013253553,0.0001876279,0.00037354534,0.00022242562,0.00004647366,0.00013347967,0.00013067524,0.00039007477,0.000004542914],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0065497407,0.01922628,0.2924066,0.038766522,0.0011993296,0.000014922819,0.009141914,0.025095653,0.11841226,0.06797712,0.006099326,0.41511035],"study_design_scores_gemma":[0.05248147,0.012365339,0.10774269,0.014503788,0.0024050935,0.0001394879,0.024348669,0.3973897,0.018462393,0.10428494,0.26196703,0.0039094086],"about_ca_topic_score_codex":0.000004593976,"about_ca_topic_score_gemma":4.4179313e-7,"teacher_disagreement_score":0.41120094,"about_ca_system_score_codex":0.00081357954,"about_ca_system_score_gemma":0.00058683835,"threshold_uncertainty_score":0.76667726},"labels":[],"label_agreement":null},{"id":"W4213420369","doi":"10.1002/cpz1.368","title":"Flow Virometry for Characterizing the Size, Concentration, and Surface Antigens of Viruses","year":2022,"lang":"en","type":"review","venue":"Current Protocols","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"Flow cytometry; Staining; Virus; Virology; Antigen; Biology; Chemistry; Molecular biology; Immunology; Genetics","score_opus":0.28987949559394605,"score_gpt":0.42996410435429694,"score_spread":0.1400846087603509,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213420369","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004946742,0.8887991,8.7081145e-7,0.000046475307,0.0000970327,0.105486274,0.0050313813,0.00002503333,0.00001920743],"genre_scores_gemma":[0.0000059905183,0.9125317,0.000020571044,0.00001405551,0.00015329364,0.087051995,0.00019721167,0.000001934213,0.000023282664],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99836975,0.00026681361,0.00043751657,0.00033016427,0.00030025013,0.00029551153],"domain_scores_gemma":[0.9971009,0.002327531,0.00037670814,0.00008389498,0.000056042063,0.00005491976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005877286,0.0002405102,0.00077980186,0.000006176622,0.0004320782,0.00008904383,0.00044150176,0.00006492731,0.00021946436],"category_scores_gemma":[0.00047882146,0.00007285061,0.00022077835,0.0003372571,0.00013925305,0.00008165037,0.00028357178,0.00025495954,0.0000034962454],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013988651,0.00007401469,0.00008129558,0.0055834143,0.000057910882,3.418507e-7,0.00002937434,7.57374e-8,0.0030731151,0.000025926995,0.0014071998,0.98965335],"study_design_scores_gemma":[0.00006844416,0.00014314815,0.00020790035,0.0019303934,0.000041420975,0.0000017691019,0.000015833255,0.0000056485915,0.00012305682,0.000012931919,0.99729097,0.0001584988],"about_ca_topic_score_codex":0.000005336911,"about_ca_topic_score_gemma":0.000005534801,"teacher_disagreement_score":0.99588376,"about_ca_system_score_codex":0.00003040578,"about_ca_system_score_gemma":0.000048327685,"threshold_uncertainty_score":0.332324},"labels":[],"label_agreement":null},{"id":"W4220727697","doi":"10.1002/cpz1.404","title":"Methods for Enhanced Fluorescence Detection of Proteins by using Entrapped Gold Nanoparticles in Membranes","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Nitrocellulose; Colloidal gold; Analyte; Detection limit; Membrane; Immunoassay; Chromatography; Fluorescence; Chemistry; Biosensor; Fluorescence microscope; Nanoparticle; Nanotechnology; Biochemistry; Antibody; Materials science; Biology; Immunology","score_opus":0.04156251542772918,"score_gpt":0.355338451709903,"score_spread":0.3137759362821738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220727697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5621904,0.00046849105,0.34015188,0.000015901896,0.0003638699,0.09651627,0.00005059043,0.0002169542,0.000025655889],"genre_scores_gemma":[0.9047215,0.000005264824,0.003820545,0.0000017027363,0.000026967775,0.091395944,0.0000024479225,0.000018784893,0.0000068439813],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914473,0.00009087659,0.0002907011,0.00016094795,0.00010840069,0.000204339],"domain_scores_gemma":[0.9997315,0.000040951287,0.000055131306,0.00011074701,0.000025551575,0.000036155285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031057806,0.000103158534,0.00017159765,0.00007790078,0.000054570814,0.000014637894,0.000092028626,0.00003216588,0.000016152997],"category_scores_gemma":[0.00004490408,0.00010618724,0.00006303966,0.00031201643,0.000023315619,0.00007946074,0.000025832622,0.00014861276,4.3309407e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004562306,0.00006844468,0.000009276468,0.000419152,0.0000047631456,6.190231e-8,0.00004807131,0.002542887,0.8458834,0.000013383689,0.0000070816573,0.15095781],"study_design_scores_gemma":[0.0003937486,0.000103084276,0.000016988059,0.000064174325,0.000005924732,5.839061e-7,0.000020910345,0.18237975,0.8123549,0.0001546682,0.00440662,0.00009860388],"about_ca_topic_score_codex":0.000006458486,"about_ca_topic_score_gemma":0.0000021445853,"teacher_disagreement_score":0.3425311,"about_ca_system_score_codex":0.000086908454,"about_ca_system_score_gemma":0.000011669623,"threshold_uncertainty_score":0.433019},"labels":[],"label_agreement":null},{"id":"W4220826192","doi":"10.1002/cpz1.383","title":"Measurable Residual Disease Detection in B‐Acute Lymphoblastic Leukemia: The Children's Oncology Group (COG) Method","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Acute Lymphoblastic Leukemia research","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Minimal residual disease; Medicine; Protocol (science); Lymphoblastic Leukemia; Flow cytometry; Immunophenotyping; Oncology; Leukemia; Pediatric oncology; Internal medicine; Disease; Residual; Cog; Immunology; Pathology; Cancer; Computer science","score_opus":0.04043993994625328,"score_gpt":0.37624160190121053,"score_spread":0.33580166195495725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220826192","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22819485,0.0015505777,0.04065723,0.005417626,0.0019074028,0.71720386,0.0005349971,0.0009848508,0.0035486128],"genre_scores_gemma":[0.3947021,0.000025064086,0.00082561903,0.00043433328,0.00062874664,0.6026323,0.0001275381,0.0001080683,0.0005162115],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99464864,0.001545296,0.0006817777,0.0008226947,0.0014163182,0.00088525785],"domain_scores_gemma":[0.9976497,0.0006787563,0.0002362056,0.00087647483,0.00014014954,0.0004186804],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0023153287,0.00035856102,0.0005622609,0.00037456793,0.0005871764,0.00006383746,0.0006304821,0.00011572049,0.0004736494],"category_scores_gemma":[0.0008265982,0.0002709819,0.00019423015,0.001051772,0.00020194838,0.00013866716,0.00069389335,0.0014998884,0.00008573861],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.035321448,0.006125013,0.033326495,0.0013785929,0.0010583823,0.0018307916,0.0017821941,0.004737824,0.014341563,0.0018026275,0.035423536,0.8628715],"study_design_scores_gemma":[0.08538756,0.013692408,0.35107645,0.0015521552,0.0021382829,0.0039977403,0.0009299025,0.08373118,0.008436107,0.0055281506,0.4410176,0.0025124615],"about_ca_topic_score_codex":0.0001586219,"about_ca_topic_score_gemma":0.00004192235,"teacher_disagreement_score":0.8603591,"about_ca_system_score_codex":0.007964602,"about_ca_system_score_gemma":0.0036854732,"threshold_uncertainty_score":0.99997425},"labels":[],"label_agreement":null},{"id":"W4220874374","doi":"10.1002/cpz1.389","title":"Generation of Complex Syngeneic Liver Organoids from Induced Pluripotent Stem Cells to Model Human Liver Pathophysiology","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Liver physiology and pathology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Induced pluripotent stem cell; Progenitor cell; Organoid; Biology; Mesenchymal stem cell; Cell biology; Stem cell; Endothelial stem cell; Directed differentiation; Cellular differentiation; Adult stem cell; Immunology; Embryonic stem cell; In vitro; Genetics","score_opus":0.2682015068038122,"score_gpt":0.37361554573101097,"score_spread":0.10541403892719875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220874374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.959121,0.00008280846,0.00071638793,0.000050480186,0.00022614052,0.039507672,0.00020332918,0.000049524006,0.00004264151],"genre_scores_gemma":[0.9402844,0.0000069318353,0.00062568113,0.0005658866,0.0003382651,0.05771247,0.00030608848,0.000030867,0.00012946097],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980433,0.00040544395,0.0004586523,0.0005478964,0.000249744,0.0002949641],"domain_scores_gemma":[0.99892294,0.000035025565,0.00021395282,0.0005431119,0.00014636925,0.00013858089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015724183,0.0002301832,0.0005418426,0.00014093613,0.00023823726,0.00000592236,0.00026499853,0.00011548891,0.00085727987],"category_scores_gemma":[0.0000071495765,0.00021611116,0.00012920298,0.00017998609,0.00007686368,0.000054219832,0.00041049506,0.00042018038,0.00008074657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030042962,0.0007404393,0.00046811352,0.00014299116,0.000044712182,0.000024546474,0.0011488639,0.0011492753,0.9870233,0.00031376627,0.002336596,0.0063069444],"study_design_scores_gemma":[0.006503569,0.008166292,0.026929835,0.00022530607,0.00031303806,0.000024834739,0.00021754364,0.044115786,0.9040254,0.001445175,0.0071052965,0.0009279399],"about_ca_topic_score_codex":0.000033894852,"about_ca_topic_score_gemma":0.000004330552,"teacher_disagreement_score":0.08299793,"about_ca_system_score_codex":0.000117340285,"about_ca_system_score_gemma":0.00014923226,"threshold_uncertainty_score":0.93866134},"labels":[],"label_agreement":null},{"id":"W4280590893","doi":"10.1002/cpz1.442","title":"ntEdit+Sealer: Efficient Targeted Error Resolution and Automated Finishing of Long‐Read Genome Assemblies","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Human Genome Research Institute; National Institutes of Health; Genome British Columbia; Genome Canada","keywords":"Genome; Bloom filter; Computer science; Sequence assembly; Protocol (science); Pipeline (software); Reference genome; Hybrid genome assembly; Computational biology; Biology; Algorithm; Genetics; Gene","score_opus":0.03622646496452005,"score_gpt":0.3272982239662992,"score_spread":0.2910717590017792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280590893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798686,0.0033598326,0.00022983635,0.000051027,0.00020888462,0.015868532,0.00019205488,0.000024102284,0.00019711535],"genre_scores_gemma":[0.97508305,0.00005402238,0.00019178257,0.000015253984,0.00010498512,0.024325324,0.00013725575,0.000019117148,0.000069220194],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99884355,0.0001070532,0.0002879263,0.00034015925,0.00018537037,0.00023592623],"domain_scores_gemma":[0.9993965,0.000013317885,0.00018103798,0.00026177955,0.00009056144,0.000056813824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030454152,0.00015211898,0.00018736962,0.000059922084,0.00023532589,0.000021390068,0.00019119137,0.000046725338,0.000032760297],"category_scores_gemma":[0.00005877289,0.00015300183,0.000066143024,0.00012328413,0.0000845707,9.866613e-7,0.0004953611,0.00011173247,0.0000011356958],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003433406,0.0005707955,0.011599757,0.0004058315,0.0001481507,0.000002821607,0.00075126364,0.012137637,0.9627232,0.00011683768,0.0037962853,0.007404085],"study_design_scores_gemma":[0.0052688476,0.004809219,0.35930446,0.00020738215,0.00012232065,0.000045174627,0.0010191773,0.021387564,0.11142269,0.00015587559,0.49476296,0.00149433],"about_ca_topic_score_codex":0.000004762854,"about_ca_topic_score_gemma":0.000003074237,"teacher_disagreement_score":0.8513005,"about_ca_system_score_codex":0.000023352644,"about_ca_system_score_gemma":0.00007778666,"threshold_uncertainty_score":0.62392336},"labels":[],"label_agreement":null},{"id":"W4280639835","doi":"10.1002/cpz1.437","title":"Autologous Hematopoietic Stem Cell Transplantation for Multiple Sclerosis, the Ottawa Protocol","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Multiple Sclerosis Research Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"Medicine; Leukapheresis; Hematopoietic stem cell transplantation; Multiple sclerosis; Transplantation; Stem cell; Cyclophosphamide; CD34; Immunology; Surgery; Chemotherapy; Biology","score_opus":0.1414995630191543,"score_gpt":0.3872583495374967,"score_spread":0.2457587865183424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280639835","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0039551063,0.000055111224,0.0016137995,0.00075428654,0.00011428847,0.99278104,0.0002133807,0.0001817524,0.00033122298],"genre_scores_gemma":[0.09452159,0.0000061633427,0.00032929436,0.00008385107,0.0001360011,0.9045556,0.000051105962,0.000044679335,0.00027172503],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971158,0.00031887175,0.0005819295,0.00051595026,0.00086706545,0.0006004046],"domain_scores_gemma":[0.99838686,0.00046481742,0.00023307728,0.00057245925,0.00019309297,0.00014971383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010076764,0.00027662274,0.00041259633,0.00011602104,0.0010244227,0.000065015345,0.0004180618,0.00004736384,0.00019579571],"category_scores_gemma":[0.00009416639,0.00019167426,0.0002140171,0.00032938688,0.00015100629,0.00009252311,0.00018152397,0.0005440028,0.000026521044],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014528379,0.010760001,0.082662,0.04925613,0.00042687112,0.000041061914,0.015061938,0.0006660019,0.11735359,0.0011818553,0.17670561,0.5313566],"study_design_scores_gemma":[0.024009174,0.0031942022,0.06180146,0.0009364313,0.00012197762,0.00005103876,0.0008978844,0.0032860416,0.043969344,0.00010254342,0.8610609,0.0005690036],"about_ca_topic_score_codex":0.000007994397,"about_ca_topic_score_gemma":0.0000062090603,"teacher_disagreement_score":0.6843553,"about_ca_system_score_codex":0.00021687517,"about_ca_system_score_gemma":0.0002489139,"threshold_uncertainty_score":0.78791344},"labels":[],"label_agreement":null},{"id":"W4281252213","doi":"10.1002/cpz1.429","title":"Freshly Isolated Hepatocytes from Chimeric Humanized Liver Mice for the <i>In Vitro</i> Assessment of Drug Metabolism, Inhibition/Induction, and Safety Studies","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Liver physiology and pathology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"KMT Hepatech (Canada)","funders":"","keywords":"In vitro; Drug metabolism; Biology; Hepatocyte; Cryopreservation; Drug development; In vivo; Drug; Cell biology; Cell; In vitro toxicology; Pharmacology; Immunology; Computational biology; Biochemistry; Biotechnology; Embryo","score_opus":0.062331790546871435,"score_gpt":0.37453475008311643,"score_spread":0.312202959536245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281252213","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87610626,0.007964386,0.00040004225,0.00065383606,0.0005047804,0.11384049,0.00044054148,0.00005071616,0.000038928792],"genre_scores_gemma":[0.77026075,0.00031102993,0.00079416716,0.0003121523,0.0002425113,0.22775838,0.0002218241,0.000021486258,0.000077670855],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99867976,0.00032488423,0.00038179793,0.0003021226,0.00014097337,0.00017047481],"domain_scores_gemma":[0.9990293,0.00038433814,0.00021183654,0.00021718247,0.00012652135,0.000030821913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044408345,0.00015001128,0.00047895318,0.00007271664,0.00029585764,0.0000052974365,0.00009235684,0.000034786866,0.00011179971],"category_scores_gemma":[0.00004772466,0.0001070599,0.00008696983,0.00016781609,0.00019268839,0.00007606364,0.00017293653,0.00035306482,0.0000016862041],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022000711,0.004880785,0.036918778,0.0024047827,0.0021437248,0.000038071033,0.020393513,0.00013384764,0.867144,0.005357762,0.011709651,0.026874352],"study_design_scores_gemma":[0.05075645,0.0028920453,0.5945447,0.0010126535,0.00203955,0.00010317674,0.005379182,0.0064401827,0.11357351,0.009776028,0.21230142,0.0011811036],"about_ca_topic_score_codex":0.000038696006,"about_ca_topic_score_gemma":0.000006183019,"teacher_disagreement_score":0.7535705,"about_ca_system_score_codex":0.000054000277,"about_ca_system_score_gemma":0.000100399346,"threshold_uncertainty_score":0.4365776},"labels":[],"label_agreement":null},{"id":"W4281386400","doi":"10.1002/cpz1.427","title":"Triplet‐Primed PCR Assays for Accurate Screening of <i>FMR1</i> CGG Repeat Expansion and Genotype Verification","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genetics and Neurodevelopmental Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"","keywords":"Amplicon; FMR1; Fragile X syndrome; Biology; Genetics; Melting curve analysis; Molecular biology; Multiplex ligation-dependent probe amplification; Polymerase chain reaction; Locus (genetics); High Resolution Melt; Southern blot; Capillary electrophoresis; Genotype; Allele; Gene; Exon","score_opus":0.051726295446515975,"score_gpt":0.3261081886844477,"score_spread":0.2743818932379317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281386400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9043375,0.0013491391,0.018930007,0.0001700744,0.0003096735,0.07440103,0.00022184805,0.000028294433,0.00025238367],"genre_scores_gemma":[0.9253325,0.00010297282,0.002121721,0.000082382365,0.0000312766,0.07169532,0.00048204206,0.000031778298,0.000119993085],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905086,0.00006321484,0.0002467075,0.00033956525,0.00013970438,0.00015992456],"domain_scores_gemma":[0.9994838,0.0000098522105,0.00015560827,0.00024004547,0.00006427202,0.000046383182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022696216,0.000117944466,0.000121869576,0.000036500394,0.00016478256,0.000015666206,0.00015336424,0.000036464782,0.000013219148],"category_scores_gemma":[0.000054117612,0.00012388357,0.000055996476,0.000079851416,0.00003413096,0.0000038016035,0.00019604493,0.00007022775,4.940767e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035418375,0.00012757056,0.0009449242,0.00011133357,0.000013475404,1.4690299e-7,0.000059725382,0.000093630675,0.9561881,0.00004731849,0.0015722638,0.040487334],"study_design_scores_gemma":[0.002486672,0.0010796152,0.011932709,0.000039823954,0.000017753648,0.0000044078506,0.00010661489,0.00040458294,0.5926245,0.00013437665,0.39086813,0.00030081905],"about_ca_topic_score_codex":0.0000016413898,"about_ca_topic_score_gemma":9.796315e-7,"teacher_disagreement_score":0.38929585,"about_ca_system_score_codex":0.00000869221,"about_ca_system_score_gemma":0.000066859684,"threshold_uncertainty_score":0.5051825},"labels":[],"label_agreement":null},{"id":"W4281670905","doi":"10.1002/cpz1.419","title":"A Comprehensive Guide for Assessing Covalent Inhibition in Enzymatic Assays Illustrated with Kinetic Simulations","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Click Chemistry and Applications","field":"Chemistry","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Federation of Pharmaceutical Industries and Associations; McGill University","keywords":"Covalent bond; Chemistry; Potency; Combinatorial chemistry; Biochemistry; Stereochemistry; In vitro; Organic chemistry","score_opus":0.09278013291664453,"score_gpt":0.39290963607983104,"score_spread":0.30012950316318654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281670905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91325563,0.000061598024,0.008007825,0.0003536099,0.00003791839,0.07463597,0.0006919016,0.00024176843,0.0027138006],"genre_scores_gemma":[0.7173623,3.9651655e-7,0.00048163903,0.000020505197,0.000056802965,0.281282,0.00063582486,0.000020029898,0.00014053688],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987278,0.000031637308,0.0004289282,0.00033537557,0.00023648316,0.00023977915],"domain_scores_gemma":[0.99907506,0.00021018258,0.00021746237,0.00030899965,0.00012749953,0.000060774037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000093429706,0.00016863238,0.00019182796,0.000048625097,0.0003108237,0.00007498093,0.00011907701,0.000040608644,0.0005754641],"category_scores_gemma":[0.000045935096,0.00017417403,0.000053806456,0.0003194837,0.000050336555,0.00010083337,0.00007667489,0.00030036125,0.0000028903771],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020788844,0.0025568875,0.003198446,0.004110402,0.00004473359,0.00001229322,0.00049519044,0.089224495,0.8884078,0.0014505679,0.0034470153,0.006844247],"study_design_scores_gemma":[0.009878597,0.00016430725,0.0010592394,0.0020003824,0.00009193117,0.000066464236,0.001409634,0.06690002,0.3518266,0.0029766068,0.562541,0.0010852356],"about_ca_topic_score_codex":0.0000049952755,"about_ca_topic_score_gemma":0.0000038924113,"teacher_disagreement_score":0.55909395,"about_ca_system_score_codex":0.00023191403,"about_ca_system_score_gemma":0.00014525435,"threshold_uncertainty_score":0.71026105},"labels":[],"label_agreement":null},{"id":"W4283830595","doi":"10.1002/cpz1.479","title":"Isolation, Culture, and Characterization of Primary Salivary Gland Cells","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Salivary Gland Disorders and Functions","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Salivary gland; Biology; In vivo; Saliva; Cell biology; Cell culture; Ex vivo; Population; Explant culture; In vitro; Cell; Pathology; Immunology; Medicine; Biochemistry; Genetics","score_opus":0.03255114559342887,"score_gpt":0.2991300557201798,"score_spread":0.26657891012675095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283830595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7361271,0.0013304421,0.011737324,0.00071989733,0.0013698641,0.2317668,0.0007421254,0.00030935672,0.015897082],"genre_scores_gemma":[0.7091754,0.00030850674,0.0015636361,0.0013113958,0.00093459344,0.27694955,0.0050634453,0.00009957789,0.004593878],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99933636,0.00003904371,0.00020550881,0.00015286458,0.00017495957,0.00009125482],"domain_scores_gemma":[0.9996352,0.00001084697,0.00010409818,0.00014153049,0.000054113007,0.000054176515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009680589,0.00008085393,0.00016834789,0.00006599491,0.00012358451,0.00001005971,0.000038123406,0.000022339827,0.0003031057],"category_scores_gemma":[0.000008014401,0.000068899215,0.000038590955,0.0001659898,0.00002752603,0.00007808655,0.000060607563,0.00012106639,0.000002942953],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015931282,0.002258837,0.57257724,0.0019356397,0.000076428405,0.0000055325618,0.001644861,0.000008964117,0.37366584,0.0014487689,0.0137514165,0.031033335],"study_design_scores_gemma":[0.0043721567,0.0011004169,0.38152868,0.00016237146,0.00007777758,0.000036261838,0.00010574213,0.00030636822,0.002544841,0.00037174555,0.6091838,0.00020983929],"about_ca_topic_score_codex":0.0000024847259,"about_ca_topic_score_gemma":1.1940203e-7,"teacher_disagreement_score":0.5954324,"about_ca_system_score_codex":0.000023430744,"about_ca_system_score_gemma":0.000068730675,"threshold_uncertainty_score":0.33187953},"labels":[],"label_agreement":null},{"id":"W4285011802","doi":"10.1002/cpz1.480","title":"Isolating Nuclei From Frozen Human Heart Tissue for Single‐Nucleus RNA Sequencing","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Prevention of Organ Failure; University of British Columbia Hospital; University of British Columbia","funders":"","keywords":"Human heart; Computational biology; Human disease; Biology; Small nuclear RNA; Disease; Bioinformatics; Neuroscience; Heart disease; Medicine; Pathology; RNA; Genetics; Internal medicine; Non-coding RNA; Gene","score_opus":0.06480128794242043,"score_gpt":0.3877329709237292,"score_spread":0.3229316829813088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285011802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6310822,0.0007067213,0.16793884,0.00080380327,0.00039156052,0.19238037,0.0018109741,0.0004363302,0.004449219],"genre_scores_gemma":[0.70550865,0.0000021301046,0.016530601,0.00039717724,0.000489319,0.27545378,0.0014100728,0.000068641115,0.00013961935],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987489,0.00008437668,0.00028245707,0.0005014377,0.00010850043,0.0002743534],"domain_scores_gemma":[0.9992327,0.000012347649,0.00014638908,0.00048450351,0.000055456545,0.0000686033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019583863,0.00016826756,0.00016714723,0.000031710173,0.0005185977,0.00003933238,0.0003463013,0.0000856208,0.00011200853],"category_scores_gemma":[0.000034315803,0.00018433822,0.00011481033,0.000075940035,0.000050146948,0.000003723017,0.00035242492,0.00016926587,0.000004944206],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025647169,0.00010337692,0.00019409167,0.000018854711,0.000014248305,4.4761887e-7,0.00002675105,0.000019935433,0.98647964,0.00043192643,0.00493316,0.0077519375],"study_design_scores_gemma":[0.00032428443,0.00046025024,0.000046239755,0.000018505478,0.000008614621,0.00000409727,0.000023450177,0.000073036186,0.47306952,0.0007984008,0.5250009,0.00017272553],"about_ca_topic_score_codex":0.000022979755,"about_ca_topic_score_gemma":0.000004253551,"teacher_disagreement_score":0.52006775,"about_ca_system_score_codex":0.00006937076,"about_ca_system_score_gemma":0.00006830016,"threshold_uncertainty_score":0.7517094},"labels":[],"label_agreement":null},{"id":"W4285098558","doi":"10.1002/cpz1.483","title":"Receptor Interactome Discovery with RDIMIS, a Membrane Protein Interaction Screen Using Recombinant Extracellular Vesicles","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Microsemi (Canada)","funders":"","keywords":"Extracellular vesicles; Vesicle; Transmembrane protein; Extracellular; Membrane protein; Membrane; Cell biology; Interactome; G protein-coupled receptor; Computational biology; Biology; Chemistry; Receptor; Biochemistry; Signal transduction","score_opus":0.035199583889179833,"score_gpt":0.3200221111403382,"score_spread":0.28482252725115836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285098558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9515432,0.00080879225,0.0048908778,0.00007999942,0.00032482535,0.042097136,0.00011010796,0.00005520297,0.000089854584],"genre_scores_gemma":[0.910479,0.000011264643,0.001914892,0.000038887214,0.00034216352,0.085505776,0.00060402526,0.0001151084,0.0009888664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99759746,0.00036856305,0.00045291835,0.00073457405,0.0004174518,0.0004290569],"domain_scores_gemma":[0.9986425,0.000013627858,0.00036614202,0.00073300436,0.00008546451,0.00015925948],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004164758,0.0003349024,0.0002557645,0.0001072162,0.00032045992,0.00015533082,0.00050791586,0.00006740628,0.00023630771],"category_scores_gemma":[0.000071321054,0.0003146925,0.00016364674,0.00022652492,0.000104757186,0.00006385615,0.0005126036,0.00043765406,0.000014588658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016557189,0.0008791786,0.00083388237,0.0001902714,0.000063753316,0.000018525923,0.00006015776,0.0003712523,0.9883574,0.0001097716,0.0006462797,0.006813762],"study_design_scores_gemma":[0.0018770309,0.0011257004,0.00010180499,0.00046093488,0.000039609076,0.00006434335,0.00021679868,0.00061180786,0.753441,0.00007984608,0.2413525,0.0006286569],"about_ca_topic_score_codex":0.000014507741,"about_ca_topic_score_gemma":0.0000035110572,"teacher_disagreement_score":0.24070622,"about_ca_system_score_codex":0.00015741462,"about_ca_system_score_gemma":0.00023951718,"threshold_uncertainty_score":0.9999305},"labels":[],"label_agreement":null},{"id":"W4289793915","doi":"10.1002/cpz1.504","title":"Methods to Evaluate the Potential Clinical Significance of Antibodies to Red Blood Cells","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Blood groups and transfusion","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Canadian Blood Services","funders":"Health Canada; Government of Canada; University of Toronto; Canadian Blood Services; Australian Government","keywords":"Antibody-dependent cell-mediated cytotoxicity; Antibody; Hemolysis; Immunology; Antigen; Medicine; Blood transfusion; Red blood cell; Serology; Population; Phagocytosis; Immune system; Monoclonal antibody","score_opus":0.11358787286986222,"score_gpt":0.4878711827832264,"score_spread":0.37428330991336417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289793915","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47687015,0.00035012432,0.022035742,0.007468064,0.0020171127,0.49027866,0.00013348337,0.00013541998,0.00071123266],"genre_scores_gemma":[0.4721239,0.00003518635,0.042581737,0.0012719337,0.00092169904,0.48246184,0.000024978839,0.000080715094,0.00049801153],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973703,0.00075150275,0.0006463407,0.0004088628,0.00056133367,0.00026166945],"domain_scores_gemma":[0.9988531,0.00013602708,0.000100785954,0.0005707152,0.00015701099,0.00018239107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028258518,0.00015522822,0.0004494842,0.00007915836,0.00018744577,0.000016081372,0.00030547695,0.000036639856,0.0003654725],"category_scores_gemma":[0.0001433073,0.0001053856,0.0002324273,0.00039532324,0.0000664692,0.000027425362,0.0002522908,0.00042287124,0.000016416894],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027391843,0.0037914545,0.007231345,0.0006272316,0.00022451022,0.000022606286,0.000863582,0.0002683313,0.67556393,0.00028986647,0.009562846,0.29881513],"study_design_scores_gemma":[0.009758255,0.009390171,0.05702324,0.0007054063,0.001032762,0.000033725297,0.0003063308,0.00043917386,0.41137117,0.00071044127,0.5087183,0.0005110149],"about_ca_topic_score_codex":0.000009576111,"about_ca_topic_score_gemma":0.0000010766574,"teacher_disagreement_score":0.49915546,"about_ca_system_score_codex":0.000017654029,"about_ca_system_score_gemma":0.00014443896,"threshold_uncertainty_score":0.42975003},"labels":[],"label_agreement":null},{"id":"W4292756009","doi":"10.1002/cpz1.513","title":"Synthesis of <i>Ortho</i>‐Functionalized Tetrachlorinated Azobenzene Phosphoramidites for Incorporation Into siRNAzos for Photocontrolled Gene Silencing","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Azobenzene; Phosphoramidite; Oligonucleotide; Gene silencing; Combinatorial chemistry; Chemistry; Monomer; Materials science; Polymer; Organic chemistry; Biochemistry; Gene","score_opus":0.034571781546161716,"score_gpt":0.3136720987140663,"score_spread":0.2791003171679046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4292756009","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65388584,0.000259758,0.028437335,0.000075946555,0.0008154731,0.3144222,0.0017420624,0.00025921935,0.00010218265],"genre_scores_gemma":[0.42750457,0.0000016321991,0.0029288859,0.00001769499,0.000116745774,0.5692442,0.00012250997,0.000027869077,0.00003586988],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977292,0.00008718102,0.0007961041,0.000561532,0.00045793434,0.0003680577],"domain_scores_gemma":[0.99793094,0.00050369377,0.00072696095,0.00038577002,0.00035260044,0.00010002518],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011937,0.0002661933,0.0005452597,0.00008972416,0.0005145717,0.00006235305,0.0004885806,0.00007391519,0.00067886617],"category_scores_gemma":[0.00066413335,0.0002604019,0.00025386468,0.00024274843,0.00008779413,0.00022920815,0.00014641543,0.0001470126,0.0000042156976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023330988,0.00047461808,0.00020306329,0.00078088365,0.000020554195,5.3458695e-7,0.000107222404,0.00030460203,0.9912807,0.00028265492,0.0006402244,0.0035718826],"study_design_scores_gemma":[0.0035301396,0.0003006791,0.000039296407,0.00014008388,0.000048790767,0.0000031597035,0.00010139634,0.0033325872,0.97998464,0.0022055153,0.010028078,0.0002856204],"about_ca_topic_score_codex":0.000019052342,"about_ca_topic_score_gemma":0.0000014032512,"teacher_disagreement_score":0.25482202,"about_ca_system_score_codex":0.00025080657,"about_ca_system_score_gemma":0.00038115404,"threshold_uncertainty_score":0.9999848},"labels":[],"label_agreement":null},{"id":"W4297249101","doi":"10.1002/cpz1.565","title":"Modulating Myogenesis: An Optimized <i>In Vitro</i> Assay to Pharmacologically Influence Primary Myoblast Differentiation","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"MYF5; MyoD; Myogenesis; Myogenic regulatory factors; Myosin; Myogenin; Biology; Cellular differentiation; Myocyte; Myogenic contraction; Cell biology; MyoD Protein; Genetics; Gene; Endocrinology","score_opus":0.023075349435661967,"score_gpt":0.3266529966996641,"score_spread":0.3035776472640021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297249101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9743422,0.000058182497,0.0020258552,0.0000619619,0.00009502932,0.023232043,0.000033441298,0.000029900546,0.00012137455],"genre_scores_gemma":[0.86176175,0.0000042134984,0.0007029748,0.00069125404,0.00007818165,0.13639978,0.0003263544,0.000016565114,0.00001893009],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982907,0.00043792333,0.00029381746,0.0005056118,0.00017109945,0.0003008346],"domain_scores_gemma":[0.99943995,0.000016328824,0.00011757299,0.00027538056,0.000048274735,0.00010248197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003740508,0.00017392746,0.00018903955,0.00006280016,0.00019030772,0.000022702441,0.00035281517,0.00006113984,0.000071966104],"category_scores_gemma":[0.00006332829,0.00017634041,0.00007098874,0.00016274166,0.000031017855,0.000012492105,0.00038044387,0.00018703938,0.0000047038425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015481687,0.0005423156,0.0018972621,0.000040989507,0.00001079845,8.5025187e-7,0.00004593582,0.031277176,0.950963,0.000011332966,0.00018397222,0.0134781925],"study_design_scores_gemma":[0.01304871,0.0036682282,0.18556087,0.00010644912,0.000050415896,0.000007855307,0.00018887527,0.009479231,0.74597245,0.00058729475,0.039484035,0.0018455895],"about_ca_topic_score_codex":0.000003233566,"about_ca_topic_score_gemma":0.0000014221373,"teacher_disagreement_score":0.20499055,"about_ca_system_score_codex":0.000043176584,"about_ca_system_score_gemma":0.000084677326,"threshold_uncertainty_score":0.71909535},"labels":[],"label_agreement":null},{"id":"W4297266708","doi":"10.1002/cpz1.563","title":"Using the HepaCometChip Assay for Broad‐Spectrum DNA Damage Analysis","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Carcinogens and Genotoxicity Assessment","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute for Liberal Studies; National Institute of Environmental Health Sciences","keywords":"DNA damage; Comet assay; DNA repair; Genotoxicity; DNA; Xenobiotic; Carcinogen; DNA adduct; Computational biology; Biology; Chemistry; Biochemistry; Cell biology; Enzyme; Toxicity","score_opus":0.07307976035528858,"score_gpt":0.39358827103402144,"score_spread":0.32050851067873287,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4297266708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.70036167,0.00048826972,0.16478014,0.00083306106,0.00046426294,0.1318101,0.00086672604,0.000043454987,0.0003523346],"genre_scores_gemma":[0.8557004,0.000003873663,0.00062046864,0.0001919706,0.00035562055,0.14251982,0.00033209886,0.000028875902,0.0002468937],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986343,0.00020210525,0.00023000785,0.00038670385,0.00024102912,0.00030585076],"domain_scores_gemma":[0.9991546,0.000022506892,0.00014028366,0.00057497656,0.00004664952,0.000060956616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007100408,0.00015893755,0.00019400104,0.00008972613,0.0005238834,0.000068981506,0.0003840718,0.00003666397,0.00012538546],"category_scores_gemma":[0.000029273724,0.00012885762,0.0003834741,0.00041689843,0.000044382254,0.0000030605481,0.0003769964,0.0001479346,9.700725e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045945263,0.0009932867,0.029276807,0.00018663764,0.0014388303,0.000003507766,0.00023914126,0.013743359,0.93541825,0.001448154,0.008506995,0.008285566],"study_design_scores_gemma":[0.001509537,0.0007764121,0.005911709,0.000013363041,0.00052017096,0.000009839273,0.00026852865,0.013288431,0.16196848,0.00053674047,0.8146237,0.0005730675],"about_ca_topic_score_codex":0.000013349636,"about_ca_topic_score_gemma":0.000033300974,"teacher_disagreement_score":0.8061167,"about_ca_system_score_codex":0.000063075655,"about_ca_system_score_gemma":0.00011870356,"threshold_uncertainty_score":0.5254661},"labels":[],"label_agreement":null},{"id":"W4302304767","doi":"10.1002/cpz1.559","title":"Synthesis and Use of the Bifunctional Sulfenic Acid Probe BCN‐E‐BCN for <i>In Vitro</i> and Cell‐Based Assays of Protein Oxidation","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Click Chemistry and Applications","field":"Chemistry","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Sulfenic acid; Chemistry; Cysteine; Bifunctional; Linker; Biochemistry; Bioconjugation; Combinatorial chemistry; Enzyme","score_opus":0.050942625161491846,"score_gpt":0.2933031660550015,"score_spread":0.24236054089350967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4302304767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9469201,0.00006526951,0.0007399607,0.0003265038,0.000015257547,0.05092406,0.0008470151,0.000025267023,0.00013659506],"genre_scores_gemma":[0.68923974,6.873895e-7,0.00035447878,0.000005765327,0.000018848717,0.3102315,0.000045092325,0.000009432581,0.000094433184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911344,0.000032863984,0.00030412158,0.00024242529,0.00018843696,0.000118728116],"domain_scores_gemma":[0.9991736,0.0001900009,0.00027000782,0.00027872386,0.000055535667,0.000032136064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019085318,0.000109773595,0.00015745709,0.000025128833,0.00013013689,0.000017717826,0.00014256692,0.00004259275,0.00010473325],"category_scores_gemma":[0.00014261702,0.00009601408,0.00006430058,0.00014411545,0.00008290708,0.0000637373,0.00010996798,0.00015442849,1.5182368e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020620016,0.00042158077,0.0014495295,0.0014487723,0.0000053953613,3.861888e-8,0.000025320798,0.000022222379,0.9935028,0.00013088372,0.00010886493,0.0026784113],"study_design_scores_gemma":[0.0007578768,0.000018502433,0.00019497036,0.00015851636,0.000017359425,9.0819253e-7,0.000026990283,0.0004484062,0.97881263,0.00027649885,0.019193487,0.000093862065],"about_ca_topic_score_codex":0.0000036560102,"about_ca_topic_score_gemma":7.830139e-7,"teacher_disagreement_score":0.25930744,"about_ca_system_score_codex":0.000040348346,"about_ca_system_score_gemma":0.000098793374,"threshold_uncertainty_score":0.39153406},"labels":[],"label_agreement":null},{"id":"W4303423400","doi":"10.1002/cpz1.534","title":"Genome Reporting for Healthy Populations—Pipeline for Genomic Screening from the GENCOV COVID‐19 Study","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; Hospital for Sick Children; University Health Network; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital","funders":"Canadian Institutes of Health Research","keywords":"Genotyping; Context (archaeology); Disease; Medicine; Personalized medicine; Bioinformatics; Genetics; Biology; Internal medicine; Genotype; Gene","score_opus":0.19822930261203747,"score_gpt":0.4468443088788523,"score_spread":0.24861500626681482,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4303423400","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.39600366,0.0022856835,0.3085409,0.0013177408,0.0008262744,0.2877237,0.0032374,0.000043675765,0.000020963265],"genre_scores_gemma":[0.3725063,0.00001739943,0.0049757827,0.001268272,0.0020970583,0.615588,0.0033815766,0.00007256143,0.00009303399],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981112,0.00008836066,0.00082344544,0.00052555377,0.00014715976,0.00030429353],"domain_scores_gemma":[0.99829906,0.00011599248,0.0008128093,0.0005448884,0.000100993435,0.000126234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011728974,0.0001658538,0.00021087834,0.000029973151,0.00091971696,0.000065763576,0.00036694392,0.00003683492,0.000032351556],"category_scores_gemma":[0.0010915138,0.00015157861,0.00016930171,0.00007975939,0.000024730612,0.0000031200248,0.00035695315,0.00012653478,8.2151735e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011420274,0.0049832636,0.46093902,0.00086489914,0.0006049018,0.000014009971,0.0041788733,0.0962669,0.15016532,0.0016401834,0.10137123,0.16755113],"study_design_scores_gemma":[0.0029199787,0.0011156792,0.008453014,0.0000081168,0.000050845734,0.0000045301304,0.0005782094,0.0014636028,0.0002669385,0.00084922876,0.98401344,0.00027640307],"about_ca_topic_score_codex":0.00008954664,"about_ca_topic_score_gemma":0.000130132,"teacher_disagreement_score":0.8826422,"about_ca_system_score_codex":0.00011184792,"about_ca_system_score_gemma":0.00046140113,"threshold_uncertainty_score":0.70738125},"labels":[],"label_agreement":null},{"id":"W4304693802","doi":"10.1002/cpz1.571","title":"Methods for Recombinant Production and Purification of Peptides as SUMO‐Peptide‐Intein Fusion Proteins to Protect from Degradation","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Intein; Fusion protein; Peptide; Escherichia coli; Tandem affinity purification; Biochemistry; Recombinant DNA; Cloning (programming); Target protein; Heterologous expression; Protein purification; Expression vector; Affinity chromatography; Fusion gene; Biology; Chemistry; Gene; Enzyme","score_opus":0.0532364194301609,"score_gpt":0.3778106212054986,"score_spread":0.3245742017753377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4304693802","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5029509,0.0005059346,0.22960831,0.00083773636,0.00048201537,0.26542053,0.00009607178,0.000045888024,0.00005258369],"genre_scores_gemma":[0.111333854,0.000027292275,0.13432841,0.000033417557,0.00023844048,0.75305146,0.00031260503,0.0000517646,0.00062275765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830776,0.00041201638,0.00036353985,0.0005646622,0.00017174335,0.00018028337],"domain_scores_gemma":[0.9990608,0.00002482332,0.00028275984,0.00041428852,0.00014941706,0.0000679293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011818631,0.0001676293,0.00019826354,0.000084357474,0.00023450387,0.000028831779,0.00020462064,0.00006487625,0.00003325447],"category_scores_gemma":[0.0007937421,0.0001612934,0.00008001611,0.00013641868,0.000028800543,0.000012342639,0.00017597154,0.00009454968,0.0000021906508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047589027,0.00014355688,0.00006580558,0.00011380978,0.000012104255,4.685803e-8,0.00008796776,0.000010787285,0.7644398,0.00021454213,0.00026788487,0.23416777],"study_design_scores_gemma":[0.00033264645,0.0014553142,0.00019998463,0.00014164367,0.000013379049,0.0000025777053,0.00007752706,0.000039147344,0.87095636,0.0029224234,0.12368248,0.00017653265],"about_ca_topic_score_codex":0.000032550593,"about_ca_topic_score_gemma":0.0000064929977,"teacher_disagreement_score":0.48763093,"about_ca_system_score_codex":0.00003553679,"about_ca_system_score_gemma":0.00009303271,"threshold_uncertainty_score":0.6577354},"labels":[],"label_agreement":null},{"id":"W4308934299","doi":"10.1002/cpz1.597","title":"Generation of DNA Methylation Signatures and Classification of Variants in Rare Neurodevelopmental Disorders Using EpigenCentral","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Simons Foundation Autism Research Initiative","keywords":"dNaM; Epigenetics; Computational biology; Biology; DNA methylation; Genetics; DNA sequencing; Human genetics; Genome; Gene","score_opus":0.0823728343456761,"score_gpt":0.35388718334287517,"score_spread":0.27151434899719906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308934299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98800886,0.00049813034,0.003844178,0.000010475676,0.00007982499,0.0075119985,0.000022951548,0.0000018663786,0.000021694224],"genre_scores_gemma":[0.9962043,0.000049406364,0.0005656089,0.0000024660565,0.0000261984,0.002974314,0.00016744754,0.000007469382,0.0000027430528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915236,0.00014710991,0.00027636805,0.00019668447,0.0001386073,0.00008887039],"domain_scores_gemma":[0.99963653,0.0000066748485,0.00019167816,0.00010774145,0.00003748214,0.000019891366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024661096,0.000073168885,0.00009237269,0.000069073685,0.000055683984,0.0000063458792,0.00006885389,0.000038774757,0.000010808348],"category_scores_gemma":[0.000038640243,0.00008038971,0.000024852077,0.00012475443,0.000030345303,0.0000073658894,0.0000698222,0.00006554842,4.7416002e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038867656,0.00009956502,0.035103332,0.00004323343,0.0000042569545,5.1803887e-8,0.00010598669,0.0025000419,0.940648,0.00010234888,0.0000055441656,0.02134873],"study_design_scores_gemma":[0.00078335876,0.00026440408,0.3661783,0.000028215873,0.000008098857,3.9407067e-7,0.00007027026,0.013273885,0.6172697,0.00035038358,0.0016146579,0.00015830052],"about_ca_topic_score_codex":0.0000052794644,"about_ca_topic_score_gemma":0.000010696955,"teacher_disagreement_score":0.33107498,"about_ca_system_score_codex":0.000019750782,"about_ca_system_score_gemma":0.00007453639,"threshold_uncertainty_score":0.32781973},"labels":[],"label_agreement":null},{"id":"W4309347897","doi":"10.1002/cpz1.594","title":"Bacteriophage Isolation, Purification, and Characterization Techniques Against Ubiquitous Opportunistic Pathogens","year":2022,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Brock University; University of Alberta; National Research Council Canada","funders":"","keywords":"Acinetobacter baumannii; Bacteriophage; Phage therapy; Enterococcus faecium; Biology; Microbiology; Antibiotic resistance; Pseudomonas aeruginosa; Virology; Bacteria; Escherichia coli; Antibiotics; Genetics; Gene","score_opus":0.026047214988971713,"score_gpt":0.2883850160781717,"score_spread":0.26233780108919996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309347897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83935505,0.000052868174,0.019141696,0.0012042556,0.0013836395,0.13213946,0.0015234813,0.00083028624,0.004369266],"genre_scores_gemma":[0.72339,0.0001129291,0.001868359,0.00075040886,0.000419262,0.26891434,0.0022541732,0.000092014125,0.0021985224],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988536,0.000105900544,0.00031943017,0.00035907087,0.0001594187,0.00020257114],"domain_scores_gemma":[0.99938095,0.0000125846955,0.00021829222,0.00027290863,0.000019322855,0.00009596924],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019658428,0.00015206897,0.000129587,0.000053945838,0.00049824326,0.000094431605,0.00019146217,0.00003168038,0.0029648794],"category_scores_gemma":[0.000016007898,0.00016205259,0.000041759944,0.00019820202,0.00007708041,0.00036999595,0.00031182176,0.00020189541,0.00006575884],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015500851,0.00015146032,0.001191756,0.000020842774,0.0000027136764,0.0000017002874,0.00017660754,0.0000017813802,0.8534272,0.000056856094,0.00069775287,0.14425586],"study_design_scores_gemma":[0.00019233776,0.0001259571,0.12371533,0.000033841916,0.0000110090905,0.000030406165,0.000031232623,0.00027355197,0.0073602614,0.000053080694,0.86790687,0.0002661169],"about_ca_topic_score_codex":0.00000654261,"about_ca_topic_score_gemma":0.0000023794407,"teacher_disagreement_score":0.86720914,"about_ca_system_score_codex":0.00017204764,"about_ca_system_score_gemma":0.00002249564,"threshold_uncertainty_score":0.99794656},"labels":[],"label_agreement":null},{"id":"W4317936271","doi":"10.1002/cpz1.646","title":"Identifying Genetic Regulators of Protein‐Glycan Interactions with Genome‐Wide CRISPR Screening","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Glycan; Biology; Computational biology; Glycosylation; CRISPR; Immune system; Gene; Genetics; Glycoprotein","score_opus":0.03587425920216512,"score_gpt":0.38304644434910756,"score_spread":0.3471721851469424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317936271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.789598,0.00034631367,0.17915687,0.000048132304,0.00013377919,0.030453712,0.000022980757,0.00009660191,0.00014363321],"genre_scores_gemma":[0.957739,0.000017115917,0.0045618787,0.000008572506,0.00021868148,0.03696152,0.00008518059,0.000055766814,0.00035230455],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884015,0.000032315394,0.00029835833,0.00034482748,0.0001894984,0.000294855],"domain_scores_gemma":[0.99925685,0.000008838233,0.000118479584,0.0004243458,0.000098621895,0.000092886046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013140259,0.00017982046,0.00016750704,0.00013179159,0.00008024671,0.0000355564,0.0002166519,0.000051861844,0.000022202852],"category_scores_gemma":[0.000051132698,0.00016807711,0.00008791926,0.00030988242,0.000055185425,0.000007248501,0.0001408033,0.00012561743,0.000011566856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016176412,0.000101780184,0.020528998,0.0007602579,0.00012139037,0.0000069066546,0.0002772278,0.0053050024,0.9506623,0.00004212594,0.0007181613,0.021314062],"study_design_scores_gemma":[0.0011730129,0.00046243827,0.09644161,0.00082013424,0.00003670302,0.000019081515,0.00028374253,0.00063473947,0.7933464,0.000074544034,0.10618648,0.00052108616],"about_ca_topic_score_codex":0.000006139514,"about_ca_topic_score_gemma":0.000011965857,"teacher_disagreement_score":0.17459498,"about_ca_system_score_codex":0.000011560825,"about_ca_system_score_gemma":0.00005334512,"threshold_uncertainty_score":0.6853986},"labels":[],"label_agreement":null},{"id":"W4320486808","doi":"10.1002/cpz1.661","title":"Pseudoknots in RNA Structure Prediction","year":2023,"lang":"en","type":"review","venue":"Current Protocols","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Pseudoknot; RNA; Computational biology; Nucleic acid structure; Computer science; Nucleic acid secondary structure; Function (biology); Biology; Genetics; Gene","score_opus":0.10276086348945815,"score_gpt":0.4057780087949539,"score_spread":0.3030171453054957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320486808","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000008049516,0.9020408,0.00013141695,0.0000032775424,0.00046150648,0.09685217,0.00035088236,0.000046532947,0.000105409796],"genre_scores_gemma":[0.0000022156999,0.8084445,0.000073207564,0.0000042863403,0.0007150495,0.18981509,0.000584678,0.00008186629,0.00027909287],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979141,0.00024830707,0.0006156209,0.0006691546,0.0002091042,0.00034375105],"domain_scores_gemma":[0.99893904,0.000017439004,0.0003020762,0.00061881874,0.000037889375,0.00008473619],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002869613,0.00042682458,0.00078346033,0.00016062836,0.000048892165,0.000051209936,0.0004586905,0.0005861112,0.000048778806],"category_scores_gemma":[0.00012840323,0.0003536973,0.00031235712,0.0002676874,0.000029496192,0.0000039989877,0.0001849786,0.00034006842,0.000089871035],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011621717,0.000038120867,0.000004429981,0.013204295,0.00003819657,0.0000031751063,0.000005414014,9.38454e-7,0.00095202046,0.000051529638,0.0014384228,0.98425186],"study_design_scores_gemma":[0.00020708451,0.00011513256,0.0000031839463,0.015507778,0.000050148337,0.000008783951,0.0000013542176,0.0000011931372,0.0016048548,0.00025244983,0.9819334,0.00031462748],"about_ca_topic_score_codex":0.0000013567715,"about_ca_topic_score_gemma":0.0000055011997,"teacher_disagreement_score":0.9839372,"about_ca_system_score_codex":0.000045016906,"about_ca_system_score_gemma":0.0002703413,"threshold_uncertainty_score":0.9998915},"labels":[],"label_agreement":null},{"id":"W4321443519","doi":"10.1002/cpz1.671","title":"A Guide to Gene‐Centric Analysis Using TreeSAPP","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Office of Science; Genome British Columbia; National Energy Research Scientific Computing Center; Joint Genome Institute; Alliance de recherche numérique du Canada; Genome Canada; U.S. Department of Energy","keywords":"Phylogenetic tree; Workflow; Computer science; Tree (set theory); Set (abstract data type); Computational biology; Protocol (science); Data mining; Documentation; Biology; Gene; Genetics; Database","score_opus":0.057003084036878454,"score_gpt":0.3886664617425493,"score_spread":0.3316633777056709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321443519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96156174,0.00046209668,0.0058070244,0.00007806068,0.0002091351,0.031172412,0.000096919175,0.000025203015,0.0005873938],"genre_scores_gemma":[0.8049434,0.00038859452,0.01075982,0.00046640236,0.0023643791,0.17636853,0.00047887958,0.00014345186,0.004086529],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988542,0.000037419188,0.0002441887,0.00040648118,0.00012919994,0.00032847488],"domain_scores_gemma":[0.9993167,0.0000063980765,0.00006484073,0.0004078239,0.000088183595,0.00011606254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017812029,0.00015637328,0.00019821417,0.00019515918,0.00010457688,0.00003499143,0.00022737698,0.000052283627,0.000010674754],"category_scores_gemma":[0.00005466908,0.00014838285,0.00018153297,0.0009898135,0.000022645028,5.1922206e-7,0.00028301994,0.00004127719,0.000056365243],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006855549,0.00011340326,0.0431278,0.000057029945,0.00064032373,0.0000039998367,0.00014033719,0.007817594,0.90571606,0.000043682612,0.01820356,0.024067635],"study_design_scores_gemma":[0.0005661402,0.00017189699,0.022283409,0.000021034959,0.00017728338,0.0000020164014,0.00003960988,0.001103297,0.07869049,0.000048521906,0.89651734,0.00037894666],"about_ca_topic_score_codex":0.00000966654,"about_ca_topic_score_gemma":0.000014797623,"teacher_disagreement_score":0.8783138,"about_ca_system_score_codex":0.000019307441,"about_ca_system_score_gemma":0.00006214096,"threshold_uncertainty_score":0.60508776},"labels":[],"label_agreement":null},{"id":"W4321443541","doi":"10.1002/cpz1.696","title":"Multiplex Quantification of Plasma Biomarkers for Patients with Gaucher Disease Type 1","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Université de Sherbrooke","funders":"","keywords":"Glucocerebrosidase; Chromatography; Chemistry; Multiplex; High-performance liquid chromatography; Sphingolipid; Medicine; Enzyme; Biochemistry; Bioinformatics; Biology","score_opus":0.1139769327837668,"score_gpt":0.41472569447885427,"score_spread":0.30074876169508746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321443541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7744743,0.00003125436,0.00034310724,0.00019981792,0.00009837005,0.22452402,0.00012128531,0.00011875168,0.00008909291],"genre_scores_gemma":[0.8002241,0.000005175762,0.00032262196,0.000007444278,0.00004788473,0.19822818,0.0008012431,0.00004658999,0.00031675978],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988688,0.000030290346,0.00021021918,0.00025366916,0.00040263278,0.00023438413],"domain_scores_gemma":[0.9988915,0.00007006435,0.000090760754,0.00030873224,0.0004799537,0.0001590194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014914693,0.00010834291,0.0001687483,0.00014721211,0.00004822064,0.000013298315,0.0001063193,0.000034874196,0.0000591605],"category_scores_gemma":[0.00058921595,0.00008104862,0.000060711413,0.00056135433,0.00008032295,0.00007020835,0.00003309811,0.00006998646,0.00007390435],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0108772805,0.0017291189,0.9118387,0.0032834068,0.00010292281,0.0000025876302,0.00012105397,0.000014154118,0.0022176295,0.000104108076,0.009439753,0.060269296],"study_design_scores_gemma":[0.01068972,0.0013312083,0.91709614,0.00091194763,0.0000585503,2.0126492e-7,0.00004737685,0.005164414,0.0027312494,0.000069711714,0.06168104,0.00021847281],"about_ca_topic_score_codex":0.000003739559,"about_ca_topic_score_gemma":0.0000014308029,"teacher_disagreement_score":0.060050827,"about_ca_system_score_codex":0.000045523855,"about_ca_system_score_gemma":0.0001747124,"threshold_uncertainty_score":0.3305067},"labels":[],"label_agreement":null},{"id":"W4321443557","doi":"10.1002/cpz1.666","title":"Clustering Highly Divergent Homologous Proteins: An Alignment‐Free Method","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Genome; Cluster analysis; Computational biology; Alignment-free sequence analysis; Hierarchical clustering; Homology (biology); Sequence alignment; Biology; Multiple sequence alignment; Coding region; Distance matrix; Protein superfamily; Genetics; Computer science; Gene; Peptide sequence; Artificial intelligence; Algorithm","score_opus":0.059212665593226306,"score_gpt":0.3747504526448367,"score_spread":0.3155377870516104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321443557","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3672784,0.0000691399,0.116882764,0.0020272064,0.004952315,0.48959556,0.000608997,0.0033846723,0.015200976],"genre_scores_gemma":[0.14657375,0.000058027512,0.043151226,0.00046347384,0.0010635226,0.7986422,0.00025766803,0.00020790426,0.009582215],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984458,0.00014328743,0.0002871448,0.00047174536,0.00022188778,0.00043012685],"domain_scores_gemma":[0.9990906,0.000021233436,0.000112121685,0.0006020279,0.000010109036,0.00016387546],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00033605302,0.00019676366,0.00017117534,0.00005666526,0.00023827479,0.000104501494,0.0005603078,0.000060105765,0.0027536855],"category_scores_gemma":[0.00003480744,0.00017762832,0.00009175728,0.00031161084,0.0000668586,0.0004557254,0.00092323375,0.00018539741,0.0021306584],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007434752,0.0007019026,0.0013158842,0.00012240368,0.000026479398,0.00003333271,0.0009924782,0.0008407596,0.6785818,0.000076720324,0.028310625,0.2889233],"study_design_scores_gemma":[0.0014016717,0.00063812535,0.056942277,0.00026885382,0.000030736253,0.00004364546,0.00012762615,0.003582653,0.065445736,0.0009594437,0.86977524,0.0007840122],"about_ca_topic_score_codex":0.00012519746,"about_ca_topic_score_gemma":0.00007952596,"teacher_disagreement_score":0.8414646,"about_ca_system_score_codex":0.00018695516,"about_ca_system_score_gemma":0.000011724765,"threshold_uncertainty_score":0.9986463},"labels":[],"label_agreement":null},{"id":"W4321996586","doi":"10.1002/cpz1.691","title":"Preparation of a Convertible Spacer Containing a Disulfide Group for Versatile Functionalization of Oligonucleotides","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Concordia University","keywords":"Linker; Phosphoramidite; Oligonucleotide; Combinatorial chemistry; Oligonucleotide synthesis; Chemistry; Surface modification; Solid-phase synthesis; Conjugate; DNA; Biochemistry; Computer science; Peptide","score_opus":0.04023660113612454,"score_gpt":0.39251057137870277,"score_spread":0.3522739702425782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321996586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72352684,0.00016667985,0.20961232,0.00010575477,0.00018670903,0.06570219,0.00023613604,0.00019563334,0.00026774302],"genre_scores_gemma":[0.98725104,0.000019847666,0.0017883144,0.000008361057,0.00006638624,0.010295878,0.0004901779,0.000011307442,0.0000686752],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993458,0.000027728805,0.00024175443,0.00018477511,0.00009730778,0.00010263018],"domain_scores_gemma":[0.99941474,0.000015460579,0.0002054911,0.00016022728,0.00018313152,0.000020965857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019551603,0.00008115499,0.00014044832,0.000063574684,0.000035934056,0.0000066991274,0.000052458206,0.00005301194,0.0000020936598],"category_scores_gemma":[0.00013296386,0.00007311469,0.00009411215,0.0001683577,0.000056154604,0.000007051551,0.00003552477,0.000021716804,6.867557e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006505605,0.00009399549,0.0044440473,0.00027913958,0.00003883939,6.467467e-8,0.000050692815,0.00008961652,0.985697,0.00074491877,0.0024393366,0.005471839],"study_design_scores_gemma":[0.0006254927,0.0008250625,0.001039194,0.00016542945,0.000026342095,4.4018262e-7,0.000056206904,0.0016122974,0.961187,0.0004725916,0.03388168,0.00010825682],"about_ca_topic_score_codex":0.0000024710305,"about_ca_topic_score_gemma":0.000005859574,"teacher_disagreement_score":0.26372424,"about_ca_system_score_codex":0.00000880499,"about_ca_system_score_gemma":0.000033109976,"threshold_uncertainty_score":0.298153},"labels":[],"label_agreement":null},{"id":"W4362692368","doi":"10.1002/cpz1.727","title":"Overview of Genotyping Technologies and Methods","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Multiple Sclerosis Society; Multiple Sclerosis Society of Canada; European Genomic Institute for Diabetes","keywords":"Genotyping; Computational biology; Computer science; Data science; Biology; Genetics; Genotype","score_opus":0.10367889138584364,"score_gpt":0.48772414939520825,"score_spread":0.3840452580093646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362692368","genre_codex":"methods","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25773805,0.032788362,0.49675864,0.0019159155,0.00024872908,0.20592158,0.00018121299,0.0018927346,0.0025548064],"genre_scores_gemma":[0.2201094,0.012932532,0.20039403,0.0002006347,0.0002298543,0.56503934,0.00053859735,0.00012337793,0.00043224078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943745,0.000045328976,0.000146979,0.00021304248,0.000035515885,0.000121710174],"domain_scores_gemma":[0.99956405,0.00000817255,0.00006970851,0.00030402586,0.000036632016,0.00001742255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025561996,0.00008003066,0.00010898502,0.000047141453,0.00003943765,0.000006282346,0.00015351028,0.00009825082,0.000002910446],"category_scores_gemma":[0.000074172596,0.00007021545,0.00004270858,0.00016732384,0.00010381354,0.000001256185,0.0002510982,0.000059248916,0.0000027477136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000058673627,0.000018886103,0.00071694516,0.00012793316,0.000009485133,1.3084103e-7,0.000005278341,5.136295e-7,0.65228796,0.0038744279,0.0010464045,0.34190616],"study_design_scores_gemma":[0.00011723292,0.000089548936,0.00095261255,0.00006428033,0.000004797827,0.0000024782394,0.000016071539,0.00003345889,0.5904308,0.00279488,0.40540403,0.00008978024],"about_ca_topic_score_codex":7.1774843e-7,"about_ca_topic_score_gemma":4.2134863e-7,"teacher_disagreement_score":0.40435764,"about_ca_system_score_codex":0.0000022905522,"about_ca_system_score_gemma":0.000018995346,"threshold_uncertainty_score":0.28633028},"labels":[],"label_agreement":null},{"id":"W4364352229","doi":"10.1002/cpz1.716","title":"Mammalian Reoviruses: Propagation, Quantification, and Storage","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Research Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Reoviridae; Virology; Biology; Cell culture; Staining; Virus; Virus quantification; Genetics; Rotavirus","score_opus":0.14925749499911978,"score_gpt":0.443878915357132,"score_spread":0.2946214203580122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364352229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.66487056,0.0003708714,0.0077629834,0.016691389,0.0004519643,0.30750337,0.0001168122,0.0011163303,0.0011157368],"genre_scores_gemma":[0.70763123,0.00019941735,0.0006577246,0.00034070693,0.0005467999,0.28752396,0.0003643292,0.000051184565,0.0026846388],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987899,0.00012329,0.00028346397,0.0002861674,0.00018757406,0.0003295849],"domain_scores_gemma":[0.99932134,0.000016076261,0.0000664453,0.00026929824,0.000121753204,0.0002051142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005899503,0.00009968963,0.00020605695,0.00014268716,0.00009201682,0.000032956046,0.00008030546,0.00004241887,0.00008349243],"category_scores_gemma":[0.0006797123,0.00008217,0.000039180777,0.00028076317,0.00011985001,0.00010421725,0.0000615791,0.00018292296,0.00038051506],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088527345,0.00041227016,0.5414671,0.0029386864,0.000046500125,0.00008529975,0.0003139758,0.000008254929,0.027543962,0.0037413419,0.25964826,0.16290909],"study_design_scores_gemma":[0.0018384245,0.0007733906,0.41877958,0.0005909788,0.000010877024,0.00004903674,0.00006038383,0.0009345461,0.0009087168,0.000594427,0.5753195,0.00014012447],"about_ca_topic_score_codex":0.000005499202,"about_ca_topic_score_gemma":0.0000031637803,"teacher_disagreement_score":0.31567127,"about_ca_system_score_codex":0.000032051983,"about_ca_system_score_gemma":0.00007153632,"threshold_uncertainty_score":0.48908782},"labels":[],"label_agreement":null},{"id":"W4364353615","doi":"10.1002/cpz1.733","title":"ntLink: A Toolkit for <i>De Novo</i> Genome Assembly Scaffolding and Mapping Using Long Reads","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre","funders":"National Human Genome Research Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Scaffold; Sequence assembly; Computational biology; Genome; Computer science; Biology; Programming language; Genetics; Gene","score_opus":0.09019387454652054,"score_gpt":0.36477917751411787,"score_spread":0.2745853029675973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4364353615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9704473,0.0007904628,0.007225848,0.000050078204,0.0001170187,0.021237371,0.000050808474,0.00001686834,0.000064272164],"genre_scores_gemma":[0.9302048,0.00034579355,0.0048803543,0.000109581255,0.0011314533,0.062919125,0.00013301002,0.00008252241,0.0001933292],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988998,0.000027174672,0.00021931759,0.00038062048,0.00007647552,0.00039660907],"domain_scores_gemma":[0.99951816,0.00002121843,0.00008686584,0.00021992467,0.00007482121,0.00007900425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037133897,0.00016935461,0.00017569902,0.00005925693,0.0001993489,0.00007160342,0.00014657844,0.00008364739,0.0000012564077],"category_scores_gemma":[0.00006446492,0.00017256555,0.00008209917,0.00012540298,0.000044832548,0.0000018403559,0.000233123,0.000053859643,0.0000034232494],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036092624,0.00002703853,0.009178855,0.00027723238,0.000045447723,0.0000015055991,0.00011738766,0.00014800882,0.9826508,0.000071644004,0.00020845853,0.0072375303],"study_design_scores_gemma":[0.0046183337,0.00089713227,0.06444452,0.0006851407,0.00010864312,0.00008576619,0.00035134624,0.0044179973,0.22609577,0.0011367926,0.6955089,0.0016496386],"about_ca_topic_score_codex":0.0000015415126,"about_ca_topic_score_gemma":0.0000024647018,"teacher_disagreement_score":0.756555,"about_ca_system_score_codex":0.000021532707,"about_ca_system_score_gemma":0.00007771694,"threshold_uncertainty_score":0.70370185},"labels":[],"label_agreement":null},{"id":"W4365445866","doi":"10.1002/cpz1.722","title":"Using the Reactome Database","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; National Human Genome Research Institute; University of Toronto; European Bioinformatics Institute","keywords":"Ensembl; UniProt; DrugBank; Biological pathway; KEGG; Computational biology; Computer science; Protocol (science); Biology; Database; Gene; Genome; Genomics; Genetics; Gene expression; Medicine; Transcriptome","score_opus":0.11752848378182598,"score_gpt":0.39909007861722934,"score_spread":0.28156159483540333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4365445866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47162014,0.0023359517,0.11938284,0.0017302525,0.004197919,0.38739288,0.00082401163,0.0005707961,0.011945191],"genre_scores_gemma":[0.71078193,0.00065590517,0.006150847,0.0018809158,0.009575757,0.2625673,0.004451656,0.00028810435,0.0036475703],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993538,0.000026477517,0.00016198898,0.00014579245,0.00009428886,0.00021763243],"domain_scores_gemma":[0.99939936,0.0000070698866,0.000068248686,0.00044786104,0.000030442332,0.000047038382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030095628,0.00009384256,0.000068010224,0.000022515362,0.00010996892,0.000043833043,0.00024428553,0.000048538022,0.000013300652],"category_scores_gemma":[0.00002563343,0.00006377172,0.000052635834,0.00014334494,0.00004798264,0.000003815865,0.0002295067,0.000104045226,0.000064247535],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020668443,0.00020601001,0.0034908545,0.00054573285,0.00012796477,0.0000067993274,0.00037187221,0.0010245157,0.5285287,0.003766809,0.29508427,0.16663979],"study_design_scores_gemma":[0.00038047196,0.000052778832,0.00027269736,0.0000756636,0.000007493347,0.000007189786,0.00003913942,0.005621553,0.009464549,0.0003466624,0.98356265,0.00016915418],"about_ca_topic_score_codex":0.0000014563905,"about_ca_topic_score_gemma":0.0000014482247,"teacher_disagreement_score":0.6884784,"about_ca_system_score_codex":0.000006654979,"about_ca_system_score_gemma":0.000054965018,"threshold_uncertainty_score":0.2600535},"labels":[],"label_agreement":null},{"id":"W4366205472","doi":"10.1002/cpz1.744","title":"Evaluation of Neurotoxicity With Human Pluripotent Stem Cell–Derived Cerebral Organoids","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Scottish Rite Charitable Foundation of Canada; Fondation Brain Canada","keywords":"Organoid; Neurogenesis; Induced pluripotent stem cell; Neuroscience; Human brain; Cell type; Biology; Cell; Embryonic stem cell; Biochemistry","score_opus":0.08880275543392147,"score_gpt":0.37411566855602646,"score_spread":0.285312913122105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366205472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.943815,0.000053300875,0.0002086469,0.000032646654,0.00005347884,0.05520528,0.000028618568,0.000041626095,0.0005613913],"genre_scores_gemma":[0.9392883,0.000007528484,0.000031521355,0.000007490471,0.000111395675,0.06002702,0.00014673099,0.00003983428,0.0003401728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997194,0.00040919046,0.00032894505,0.0005104169,0.0011645587,0.00039291586],"domain_scores_gemma":[0.9984948,0.000009385707,0.00018129937,0.00059906265,0.0005936746,0.000121766876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012280722,0.00020798502,0.00020546166,0.00011542404,0.00011870842,0.000034668163,0.00038077743,0.00009797131,0.00006357683],"category_scores_gemma":[0.00003445704,0.00017649145,0.000087906126,0.0003537791,0.00011467876,0.000008779333,0.0002682384,0.0001661389,0.000051221057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000938177,0.00022967758,0.0035996241,0.00030120258,0.00002980727,0.0000018604647,0.00004725149,0.0003673693,0.98804706,0.00001067837,0.00088904804,0.006382578],"study_design_scores_gemma":[0.002288716,0.0008415405,0.011712883,0.000114849594,0.000034529825,0.0000025808913,0.00003732743,0.0008003486,0.9790375,0.00003792087,0.00487053,0.00022125915],"about_ca_topic_score_codex":0.0000039198253,"about_ca_topic_score_gemma":0.0000074663863,"teacher_disagreement_score":0.009009571,"about_ca_system_score_codex":0.000047506248,"about_ca_system_score_gemma":0.00032199948,"threshold_uncertainty_score":0.71971124},"labels":[],"label_agreement":null},{"id":"W4366818270","doi":"10.1002/cpz1.737","title":"The Robogut: A Bioreactor Model of the Human Colon for Evaluation of Gut Microbial Community Ecology and Function","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Breakthrough T1D Canada; Canadian Institutes of Health Research; Canada Foundation for Innovation; Canada Research Chairs","keywords":"Protocol (science); Bioreactor; Microbiome; Biochemical engineering; Microbial population biology; Biology; Microbial ecology; Function (biology); Biotechnology; Computer science; Ecology; Bioinformatics; Bacteria; Medicine; Pathology; Engineering; Cell biology","score_opus":0.13858483975935923,"score_gpt":0.41892636451456455,"score_spread":0.28034152475520535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366818270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9663823,0.000039904833,0.00009106466,0.000103464015,0.00009807703,0.03318258,0.000078265606,0.0000045226425,0.000019766894],"genre_scores_gemma":[0.978531,0.0000114494505,0.000019301571,0.000018449766,0.000044674183,0.021214448,0.00011001588,0.0000081806675,0.00004247508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999205,0.00026247493,0.0002149605,0.00010928631,0.00007591738,0.00013234284],"domain_scores_gemma":[0.99923027,0.000032151074,0.00019560814,0.00029504753,0.00022816099,0.00001874502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011767483,0.000072504285,0.00010225308,0.000021214415,0.00030985137,0.00000849609,0.00016892045,0.000084813364,0.0000013311218],"category_scores_gemma":[0.00011026345,0.000047255602,0.000060616636,0.000065699,0.00013977362,0.0000024283506,0.00012738617,0.00009985649,4.3643885e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102678416,0.00008488397,0.0017226128,0.00017906906,0.000014025466,1.5449052e-9,0.00009159924,0.00009816914,0.99215937,0.00020289897,0.002607865,0.0027368038],"study_design_scores_gemma":[0.009173302,0.0026490807,0.24595435,0.00031122187,0.00023593561,0.0000025362483,0.00026628815,0.00978698,0.6731256,0.005527679,0.052603867,0.00036315015],"about_ca_topic_score_codex":0.00000991721,"about_ca_topic_score_gemma":0.00018701299,"teacher_disagreement_score":0.31903377,"about_ca_system_score_codex":0.000017231838,"about_ca_system_score_gemma":0.00018692034,"threshold_uncertainty_score":0.23831575},"labels":[],"label_agreement":null},{"id":"W4375954640","doi":"10.1002/cpz1.774","title":"Isolation, Culture, and Transfection of Melanocytes","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"melanin and skin pigmentation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Melanin; Melanosome; Biology; Melanocyte; Melanoma; Transfection; Cell biology; Cell culture; Keratinocyte; Human skin; Epidermis (zoology); Cell type; Cell; Cancer research; Anatomy; Genetics","score_opus":0.03439623638863398,"score_gpt":0.35642529670689677,"score_spread":0.3220290603182628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4375954640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95423675,0.0004089321,0.012359044,0.00004383174,0.00023720042,0.0313483,0.000030084135,0.000051822244,0.001284072],"genre_scores_gemma":[0.9751735,0.00025286165,0.0003071422,0.000014262473,0.0002082325,0.023221254,0.0003384282,0.000013221713,0.00047113316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962676,0.000025955149,0.00010695607,0.000116827716,0.000059731603,0.00006375452],"domain_scores_gemma":[0.9998293,0.0000032146409,0.000034299086,0.00007582809,0.00003606141,0.000021298834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009261861,0.000051045576,0.000054222015,0.00002619829,0.000029618921,0.00000847091,0.000033553686,0.000039126902,0.000008000851],"category_scores_gemma":[0.000019363186,0.000044726017,0.000023081526,0.000079751975,0.000020958474,0.000003158261,0.000013380127,0.000024310852,0.0000050876897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005724946,0.000037001668,0.020466859,0.00017894733,0.000013012406,1.3566384e-7,0.00018306047,0.000010426893,0.9610242,0.00052476994,0.004127889,0.013376418],"study_design_scores_gemma":[0.0010171969,0.00042639437,0.02603531,0.000083465544,0.000009808707,0.000003107817,0.000059030826,0.00021591129,0.85615134,0.00055369316,0.11531246,0.00013228893],"about_ca_topic_score_codex":8.713049e-7,"about_ca_topic_score_gemma":0.0000012227102,"teacher_disagreement_score":0.111184575,"about_ca_system_score_codex":0.00000224268,"about_ca_system_score_gemma":0.000010902222,"threshold_uncertainty_score":0.18238741},"labels":[],"label_agreement":null},{"id":"W4376619759","doi":"10.1002/cpz1.738","title":"Analysis of Lysine Acetylation and Acetylation‐like Acylation <i>In Vitro</i> and <i>In Vivo</i>","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Acetylation; Acylation; Lysine; Succinylation; Biochemistry; Bromodomain; Histone; Acetic anhydride; Chemistry; Biology; Amino acid","score_opus":0.039750944359829156,"score_gpt":0.3623023473717734,"score_spread":0.32255140301194424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376619759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98308736,0.000056604713,0.0003118978,0.00058552047,0.0000103322245,0.015580928,0.00004790152,0.000060572347,0.00025887042],"genre_scores_gemma":[0.99135184,0.00004466783,0.00012472781,0.00006385718,0.000033348642,0.007958724,0.00026292945,0.0000113173155,0.00014856753],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99867404,0.000069611524,0.00050429,0.00030999488,0.00026489186,0.0001771963],"domain_scores_gemma":[0.9993976,0.00007084481,0.00016913598,0.00019801324,0.00008153388,0.00008288134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044498334,0.00013541113,0.00046768345,0.0012584181,0.000034559216,0.000022381637,0.000034596367,0.00007088519,0.00006945916],"category_scores_gemma":[0.0000794173,0.0001281545,0.000102781356,0.003089767,0.000059972732,0.00018963504,0.000042745847,0.00013001994,0.0000053263866],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076053047,0.00051491347,0.506101,0.0009308021,0.0002698384,0.000011167252,0.0008488232,0.0012444621,0.4587186,0.000136438,0.00055294787,0.029910488],"study_design_scores_gemma":[0.0076705767,0.00013789962,0.7098367,0.0021844273,0.0007297996,0.0000043418904,0.00022033181,0.20951335,0.064157195,0.00024917244,0.0048798597,0.00041631254],"about_ca_topic_score_codex":0.000014245029,"about_ca_topic_score_gemma":0.00004314851,"teacher_disagreement_score":0.3945614,"about_ca_system_score_codex":0.00004583265,"about_ca_system_score_gemma":0.000034765093,"threshold_uncertainty_score":0.52259886},"labels":[],"label_agreement":null},{"id":"W4377565482","doi":"10.1002/cpz1.784","title":"Synthesis of Dinucleotide Non‐Symmetrical Triester Phosphate Phosphoramidites and Their Incorporation Within Oligonucleotides","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"","keywords":"Phosphoramidite; Chemistry; Phosphate; Oligonucleotide; Nucleotide; Combinatorial chemistry; Oligonucleotide synthesis; Tris; Organic chemistry; Biochemistry; DNA","score_opus":0.022086363491056575,"score_gpt":0.2902254927201393,"score_spread":0.26813912922908273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377565482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912058,0.00015790116,0.0002124508,0.00006747181,0.00009798052,0.0078022294,0.000057048055,0.000046929516,0.0003521921],"genre_scores_gemma":[0.9896757,0.000097567674,0.0002284198,0.00002351703,0.0001322649,0.009619018,0.00007245358,0.000033133576,0.000117910335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998841,0.000036417423,0.00037458522,0.00037581,0.00014198017,0.00023021865],"domain_scores_gemma":[0.9991795,0.00005022604,0.00023065045,0.00034059378,0.000093039795,0.000106016516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030401986,0.00021716481,0.00026026,0.00007166914,0.00007371416,0.000047056237,0.00021696251,0.00012529537,0.000012382617],"category_scores_gemma":[0.00030867982,0.00017732602,0.00009018674,0.0003344066,0.00018595764,0.0000138233245,0.00021222197,0.00010687888,0.0000142826275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003164706,0.00020566715,0.02426768,0.0005679095,0.0000721405,0.00000270271,0.00014893601,0.000021844728,0.9089164,0.00013952184,0.0053663347,0.05997438],"study_design_scores_gemma":[0.00042781752,0.00015110383,0.0034503876,0.00016905837,0.00001309518,0.0000034543743,0.00007418151,0.00029276896,0.9809917,0.00030500232,0.013912635,0.00020875283],"about_ca_topic_score_codex":0.0000025103027,"about_ca_topic_score_gemma":8.615312e-7,"teacher_disagreement_score":0.07207533,"about_ca_system_score_codex":0.000010496486,"about_ca_system_score_gemma":0.000059424743,"threshold_uncertainty_score":0.7231145},"labels":[],"label_agreement":null},{"id":"W4377565740","doi":"10.1002/cpz1.788","title":"The Isolation, Culture, and Cryopreservation of Human Rectus Sheath Fibroblasts","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Hernia repair and management","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Collagenase; Cryopreservation; Connective tissue; Rectus sheath; Anatomy; Medicine; Surgery; Abdominal wall; Wound healing; Biology; Pathology; Cell biology; Embryo; Biochemistry","score_opus":0.07234326454082358,"score_gpt":0.405092546329634,"score_spread":0.3327492817888104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377565740","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32416493,0.0010451537,0.002673996,0.005066968,0.0005631975,0.6307341,0.000033267515,0.00135894,0.034359463],"genre_scores_gemma":[0.58031857,0.00044866474,0.0007818462,0.00017513806,0.00086199254,0.3980342,0.00024370883,0.00008761794,0.019048251],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99929345,0.000034667286,0.00021379277,0.00013653781,0.00019346396,0.00012810313],"domain_scores_gemma":[0.99953455,0.000028651371,0.00007046419,0.00022553724,0.00009333363,0.00004744034],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030508864,0.000072289455,0.00011306596,0.00004593343,0.00012383009,0.000024254268,0.000060884104,0.000028247543,0.000021139205],"category_scores_gemma":[0.00010530485,0.000045430617,0.000036987447,0.00020512512,0.000040479583,0.000065103195,0.00006886693,0.00008029591,0.00001512177],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007488338,0.00062869705,0.13604274,0.0063893246,0.00023206875,0.000008301176,0.0054471707,0.000038081627,0.03735432,0.029211229,0.5456601,0.23823918],"study_design_scores_gemma":[0.0014329051,0.00057856756,0.13065988,0.00072074117,0.000027400629,0.0000015292054,0.00010760646,0.0012614462,0.0027273884,0.002012403,0.86037517,0.000094986644],"about_ca_topic_score_codex":0.000004231214,"about_ca_topic_score_gemma":0.0000047420726,"teacher_disagreement_score":0.3147151,"about_ca_system_score_codex":0.0000146767425,"about_ca_system_score_gemma":0.000021595764,"threshold_uncertainty_score":0.18526068},"labels":[],"label_agreement":null},{"id":"W4382181361","doi":"10.1002/cpz1.803","title":"Measurement of GLUT4 Traffic to and from the Cell Surface in Muscle Cells","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Metabolism, Diabetes, and Cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Metropolitan University","funders":"","keywords":"Endocytosis; GLUT4; Exocytosis; Glucose transporter; Intracellular; Cell; Cell biology; Cell membrane; Population; Glucose uptake; Biology; Chemistry; Insulin; Biochemistry; Endocrinology; Membrane; Medicine","score_opus":0.042370664404091166,"score_gpt":0.30764991541985853,"score_spread":0.2652792510157674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382181361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96216464,0.019043889,0.000027872165,0.000026547792,0.00013009638,0.018510511,0.00004700694,0.000008094489,0.000041351293],"genre_scores_gemma":[0.97330856,0.0023236368,0.00008083814,0.00009209397,0.00019440781,0.023924304,0.000023503451,0.00002149621,0.00003118535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913067,0.00007480947,0.00018159824,0.0002461689,0.00018354648,0.00018321072],"domain_scores_gemma":[0.9995596,0.000009425244,0.000051983887,0.0002704482,0.000052871597,0.000055683806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003811749,0.000100711324,0.00013145512,0.00001717579,0.000024491777,0.000015608224,0.00017418356,0.000045457142,0.00001485943],"category_scores_gemma":[0.000026172766,0.0000764067,0.000039799386,0.00013914357,0.000029751927,0.0000021620126,0.00008866882,0.000061258,0.000015181958],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005407611,0.00013924926,0.0016159491,0.00014621108,0.000011432536,3.2960972e-7,0.00032918595,0.00082423387,0.816309,0.0000048524503,0.010958033,0.16960749],"study_design_scores_gemma":[0.0006762259,0.000080817335,0.009265516,0.00011411777,0.00000620269,1.8776731e-8,0.000060459643,0.000045649693,0.4962054,0.000016769973,0.4934171,0.00011170563],"about_ca_topic_score_codex":0.000014026722,"about_ca_topic_score_gemma":0.000053602354,"teacher_disagreement_score":0.4824591,"about_ca_system_score_codex":0.000009277562,"about_ca_system_score_gemma":0.00006118241,"threshold_uncertainty_score":0.3115775},"labels":[],"label_agreement":null},{"id":"W4384119684","doi":"10.1002/cpz1.840","title":"Isolation of Adult Mouse Cardiac Fibroblasts","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cardiac Fibrosis and Remodeling","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Extracellular matrix; Myofibroblast; Cell biology; Mesenchymal stem cell; Wound healing; Fibroblast; Biology; Cell culture; In vitro; Primary culture; Inflammation; Immunology; Pathology; Medicine; Fibrosis; Biochemistry; Genetics","score_opus":0.0479022407317079,"score_gpt":0.36251950292836876,"score_spread":0.31461726219666086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384119684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8213325,0.00017003065,0.0017733664,0.00035244378,0.00073376234,0.17270575,0.0001236326,0.0005566589,0.002251816],"genre_scores_gemma":[0.8653946,0.0001596347,0.0023436022,0.00004788754,0.0014362868,0.12842041,0.00036592438,0.00011721825,0.0017144734],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990008,0.00002978006,0.00030318182,0.000195162,0.0002823373,0.00018873718],"domain_scores_gemma":[0.99929965,0.000026418762,0.00009262732,0.00028554362,0.00021226543,0.0000834991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015461659,0.00010802488,0.0003148822,0.00012198613,0.000036616715,0.000012800294,0.00004842879,0.000062394225,0.000019917332],"category_scores_gemma":[0.000085294174,0.000088152905,0.00025402446,0.00032334484,0.000028680472,0.00006848348,0.000050203766,0.00012559046,0.00010353539],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050030916,0.00028740359,0.06799463,0.0041221706,0.000121324,0.0000013851031,0.00081751024,0.0006792301,0.8319746,0.00086136913,0.02727891,0.06536115],"study_design_scores_gemma":[0.009673674,0.0019054181,0.23337407,0.013163708,0.00035144447,0.000012101006,0.00041726767,0.0507155,0.497358,0.00055272266,0.1912705,0.0012056071],"about_ca_topic_score_codex":0.000003947356,"about_ca_topic_score_gemma":1.9222088e-7,"teacher_disagreement_score":0.3346166,"about_ca_system_score_codex":0.000029804796,"about_ca_system_score_gemma":0.00006638422,"threshold_uncertainty_score":0.35947713},"labels":[],"label_agreement":null},{"id":"W4384626741","doi":"10.1002/cpz1.833","title":"Western Blotting with Fast SDS‐PAGE and Semi‐Dry Protein Transfer","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Polyacrylamide gel electrophoresis; Chromatography; Lysis; Tris; Blot; Chemistry; Lysis buffer; Gel electrophoresis; Bradford protein assay; Sodium dodecyl sulfate; Gel electrophoresis of proteins; Protein purification; Molecular-weight size marker; Membrane protein; Polyacrylamide; Membrane; Biochemistry; Molecular biology; Biology; Enzyme","score_opus":0.03581546124369796,"score_gpt":0.34081257529489595,"score_spread":0.304997114051198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384626741","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7630478,0.0001054835,0.0754711,0.00033837263,0.000017215132,0.15463957,0.00017276409,0.0023818458,0.0038258552],"genre_scores_gemma":[0.23553844,0.0000132074565,0.0048186737,0.00001554718,0.00020382034,0.75803715,0.000060979095,0.00008121092,0.001230959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894565,0.000009981846,0.00022147107,0.00033194973,0.0001545453,0.00033639403],"domain_scores_gemma":[0.99945456,0.000019296198,0.000055412296,0.0003253188,0.00003573066,0.0001096776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011284009,0.0001929013,0.00016685648,0.000039208036,0.00014145723,0.00005932089,0.00016958288,0.000072897405,0.00007170174],"category_scores_gemma":[0.000007651867,0.00016520113,0.000035091238,0.00020093526,0.00006837789,0.00014014133,0.000074310934,0.000292443,0.000030591127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001244154,0.00034168837,0.039256874,0.0032105623,0.000034283294,0.000008591011,0.00073828246,0.000020069112,0.8145978,0.0034436835,0.00016434675,0.1380594],"study_design_scores_gemma":[0.0011998094,0.00007611639,0.00046835377,0.0017963207,0.000017863993,0.000009813903,0.000098245044,0.00033628452,0.8366984,0.0013044956,0.15739919,0.00059507834],"about_ca_topic_score_codex":0.0000016399786,"about_ca_topic_score_gemma":0.0000015287233,"teacher_disagreement_score":0.6033976,"about_ca_system_score_codex":0.000026591402,"about_ca_system_score_gemma":0.000027042952,"threshold_uncertainty_score":0.67367065},"labels":[],"label_agreement":null},{"id":"W4384663645","doi":"10.1002/cpz1.845","title":"Illuminate the Functions of Dark Proteins Using the Reactome‐IDG Web Portal","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Computational Drug Discovery Methods","field":"Computer Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Computational biology; Context (archaeology); Computer science; Protocol (science); Biological network; Biology; Bioinformatics","score_opus":0.11830704952771964,"score_gpt":0.40980444331982774,"score_spread":0.2914973937921081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384663645","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11360869,0.00009367466,0.6941912,0.0028789323,0.0018505092,0.1840689,0.00008694416,0.00060630933,0.00261484],"genre_scores_gemma":[0.69593537,0.000007399708,0.016489292,0.00014345226,0.00070979656,0.28600284,0.000036346846,0.00006811481,0.00060737185],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99808276,0.00037214337,0.00036860784,0.00032820358,0.00056863663,0.00027967704],"domain_scores_gemma":[0.9983075,0.00038101664,0.0002547583,0.0008369122,0.00016960329,0.0000501868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014539639,0.00014932614,0.00015700821,0.00012725937,0.00030986508,0.00016027523,0.0012065207,0.000030217207,0.000014151293],"category_scores_gemma":[0.00022700783,0.00008738562,0.0001332921,0.0015877621,0.00017502104,0.00041284016,0.00060170825,0.00026011013,0.00004441433],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013307451,0.0014542072,0.0067763687,0.0011233381,0.0002894805,0.000049238603,0.00920244,0.078345336,0.027678838,0.2896615,0.03842111,0.5468651],"study_design_scores_gemma":[0.0008931681,0.00020241649,0.02308137,0.0005963665,0.000032922875,0.000051822506,0.00032458335,0.7800489,0.0047964333,0.021672094,0.16778278,0.0005171155],"about_ca_topic_score_codex":0.0000075866806,"about_ca_topic_score_gemma":0.00000288033,"teacher_disagreement_score":0.7017036,"about_ca_system_score_codex":0.000037090453,"about_ca_system_score_gemma":0.0004241276,"threshold_uncertainty_score":0.35634822},"labels":[],"label_agreement":null},{"id":"W4385684926","doi":"10.1002/cpz1.853","title":"Identification and Quantification of Monosaccharides from Fungal Cell Walls and Exopolysaccharides by Gas Chromatography Coupled to Mass Spectrometry","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; GLS Industries (Canada); Institute of Infection and Immunity; Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Monosaccharide; Mass spectrometry; Gas chromatography; Polysaccharide; Gas chromatography–mass spectrometry; Cell wall; Chemistry; Trimethylsilyl; Chromatography; Extraction (chemistry); Biochemistry; Organic chemistry","score_opus":0.03340991613512862,"score_gpt":0.3338079456948323,"score_spread":0.3003980295597037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385684926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9678445,0.0006386605,0.004238915,0.00023093764,0.00006481716,0.026717098,0.00014240421,0.00009975255,0.000022914663],"genre_scores_gemma":[0.9872393,0.0002767702,0.00040974305,0.000016491424,0.000052641866,0.011759332,0.00010128521,0.000021178586,0.00012323323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824274,0.000049485625,0.00053718354,0.00055755116,0.00036146113,0.00025160075],"domain_scores_gemma":[0.9988833,0.0001203659,0.00021282551,0.0004487492,0.00014001137,0.00019475381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046685903,0.00019055346,0.00038976074,0.00026986538,0.000092271366,0.00007380484,0.000117814576,0.000083144056,0.00007398936],"category_scores_gemma":[0.00015602146,0.00017518541,0.000076607954,0.00067363423,0.00013036118,0.0001689917,0.000051029067,0.00015082669,0.000051078183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019415433,0.00015283897,0.18455565,0.00060933747,0.000020338275,0.0000013848054,0.00016841256,3.2630842e-7,0.8095497,0.00007601613,0.0019100556,0.0027617884],"study_design_scores_gemma":[0.00091038074,0.00019576373,0.38516048,0.0004404989,0.00006383872,0.0000010114671,0.00029159736,0.0007903557,0.61044186,0.000974252,0.0005288924,0.00020104421],"about_ca_topic_score_codex":0.00004737203,"about_ca_topic_score_gemma":0.000007159532,"teacher_disagreement_score":0.20060483,"about_ca_system_score_codex":0.00003155736,"about_ca_system_score_gemma":0.00005111711,"threshold_uncertainty_score":0.7143854},"labels":[],"label_agreement":null},{"id":"W4386209400","doi":"10.1002/cpz1.877","title":"Transcriptional Profiling of Skeletal Muscle Stem Cells After <i>In Vivo</i> Engraftment into a Heterologous Niche Environment","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; McGill University; Jewish General Hospital","funders":"","keywords":"Biology; Stem cell; Transcriptome; Niche; Cell biology; Transplantation; Cell sorting; Immunology; Genetics; Flow cytometry; Gene; Gene expression; Medicine","score_opus":0.019874518634549095,"score_gpt":0.28420636654520137,"score_spread":0.2643318479106523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386209400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980558,0.0003215456,0.00028520788,0.00003453602,0.000095207295,0.01858118,0.00005178578,0.00001721649,0.000055372428],"genre_scores_gemma":[0.9220373,0.00006655743,0.00011581148,0.000052869098,0.00006220015,0.077534676,0.000066813045,0.000016924414,0.000046862948],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987864,0.00010275386,0.00030456673,0.00039216463,0.00013847947,0.00027564802],"domain_scores_gemma":[0.99957347,0.000010031403,0.00007613707,0.00026891753,0.000015512243,0.0000559152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018742034,0.00016863864,0.00017381966,0.00005757713,0.000034655335,0.0000062522345,0.00016081793,0.00011604008,0.000057409223],"category_scores_gemma":[0.0000038332546,0.00015981805,0.00013414415,0.000079016114,0.000105702384,0.0000054729267,0.000093250084,0.00011599086,0.000028035762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002631772,0.0003819153,0.0020811982,0.00025370525,0.000020486666,0.0000022196843,0.00012212702,0.00054609915,0.98986846,0.000046580637,0.00023604152,0.006177982],"study_design_scores_gemma":[0.0020503472,0.00086741266,0.0108455,0.000094028306,0.000012689365,8.094133e-7,0.00007951718,0.00020075834,0.9082763,0.0004200227,0.07682779,0.00032483594],"about_ca_topic_score_codex":0.0000019981003,"about_ca_topic_score_gemma":0.000003993005,"teacher_disagreement_score":0.08159218,"about_ca_system_score_codex":0.000016622354,"about_ca_system_score_gemma":0.00004044512,"threshold_uncertainty_score":0.6517191},"labels":[],"label_agreement":null},{"id":"W4386910178","doi":"10.1002/cpz1.894","title":"Biofilm Models: Different Ways of Biofilm Characterization and Drug Discovery","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biofilm; Crystal violet; Microtiter plate; In vivo; Ex vivo; Microbiology; In vitro; Biology; Computational biology; Bacteria; Biotechnology; Biochemistry; Genetics","score_opus":0.052424006672657515,"score_gpt":0.29198242492891013,"score_spread":0.23955841825625263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386910178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98850805,0.000043577675,0.00075812393,0.00030010173,0.00015970075,0.010037243,0.00012517298,0.00003442647,0.000033588767],"genre_scores_gemma":[0.9906764,0.00040456973,0.00009615204,0.00015235467,0.000432782,0.006665082,0.0013265286,0.000039208262,0.00020693024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899167,0.000045174023,0.00026816648,0.00033504865,0.00011974714,0.00024021913],"domain_scores_gemma":[0.99947083,0.000007924503,0.00014070042,0.00027204322,0.00005197821,0.00005655052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008998065,0.00017674551,0.00019599496,0.00006739168,0.00007432401,0.000047268662,0.00010950054,0.00010081528,0.0000031590394],"category_scores_gemma":[0.000019727182,0.00014725352,0.00007279644,0.0001243667,0.00009313033,0.000021844773,0.00017674213,0.000083880426,0.000004174436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006710941,0.000052645075,0.0012063443,0.0001355175,0.000013684409,9.689371e-7,0.00004997685,0.0000025072525,0.9874485,0.0002747183,0.0008796785,0.009868329],"study_design_scores_gemma":[0.00065690826,0.00015873676,0.010030012,0.0001765683,0.000010445,0.0000054421025,0.000016511734,0.00056710385,0.9464338,0.00007975719,0.04158534,0.0002793642],"about_ca_topic_score_codex":0.000003063239,"about_ca_topic_score_gemma":8.7658105e-7,"teacher_disagreement_score":0.041014712,"about_ca_system_score_codex":0.000006323705,"about_ca_system_score_gemma":0.000033701293,"threshold_uncertainty_score":0.6004824},"labels":[],"label_agreement":null},{"id":"W4387002480","doi":"10.1002/cpz1.889","title":"Speckle‐Tracking Strain Analysis for Mapping Spatiotemporal Contractility of Induced Pluripotent Stem Cell (iPSC)‐Derived Cardiomyocytes","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Tissue Engineering and Regenerative Medicine","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sinai Health System; Lunenfeld-Tanenbaum Research Institute","funders":"Breakthrough T1D Canada; University of Toronto","keywords":"Speckle pattern; Contractility; Induced pluripotent stem cell; Video microscopy; Biomedical engineering; Internal medicine; Computer science; Medicine; Artificial intelligence; Biology; Cell biology; Genetics; Gene","score_opus":0.15561537781222004,"score_gpt":0.377186050496907,"score_spread":0.22157067268468697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387002480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8982237,0.0005901436,0.035325713,0.00028256918,0.00038127037,0.06476903,0.00014513532,0.0002450517,0.000037401933],"genre_scores_gemma":[0.97233707,0.000008613114,0.0004996678,0.00000417679,0.00045360983,0.026133377,0.00020397732,0.000030324954,0.0003291616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981527,0.00007655605,0.00064442726,0.00035680868,0.00040538135,0.00036412902],"domain_scores_gemma":[0.99873066,0.00012870555,0.00027759856,0.0004022389,0.0002880117,0.00017276293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005999367,0.00025277128,0.000878672,0.00045958112,0.00007877353,0.000021560882,0.00011562964,0.00009887473,0.00002630392],"category_scores_gemma":[0.0001149958,0.00020758953,0.0003822837,0.0009935481,0.000062795145,0.00007203892,0.00003592341,0.00027255787,0.0000061216797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030644273,0.00046092572,0.06001379,0.005152858,0.0013002096,0.000026969186,0.002328059,0.002548239,0.8399942,0.00012686473,0.00041881856,0.08732262],"study_design_scores_gemma":[0.007665149,0.0009465217,0.3992391,0.001903846,0.0010862198,0.0000067427945,0.0021566253,0.0157427,0.5444643,0.000032578828,0.026168644,0.0005875589],"about_ca_topic_score_codex":0.000013414097,"about_ca_topic_score_gemma":0.0000030112144,"teacher_disagreement_score":0.33922532,"about_ca_system_score_codex":0.00009633369,"about_ca_system_score_gemma":0.0001102337,"threshold_uncertainty_score":0.84652555},"labels":[],"label_agreement":null},{"id":"W4387865170","doi":"10.1002/cpz1.874","title":"Synthesis of an <i>Ortho</i>‐Functionalized Tetrafluorinated Azobenzene Phosphoramidite for Incorporation into a Tetrafluorinated Azobenzene‐Containing siRNA for Photocontrolled Gene Silencing","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"","keywords":"Azobenzene; Phosphoramidite; Gene silencing; Chemistry; Circular dichroism; Small interfering RNA; Combinatorial chemistry; Oligonucleotide; Materials science; Stereochemistry; Gene; RNA; Polymer; Biochemistry; Organic chemistry","score_opus":0.04358866003289905,"score_gpt":0.33954344605893305,"score_spread":0.295954786026034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387865170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85976017,0.00007860722,0.006924069,0.00003567778,0.0005332174,0.13137141,0.0005705854,0.0006646169,0.00006165478],"genre_scores_gemma":[0.60698044,0.0000070353744,0.0042241914,0.000018103006,0.00025762728,0.38804173,0.00034670686,0.00008259367,0.000041531584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995939,0.00014454713,0.0013806364,0.0010825136,0.000617813,0.00083548203],"domain_scores_gemma":[0.9964774,0.00072659284,0.0009638672,0.0007119236,0.00083409506,0.00028606987],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0020563344,0.0005556592,0.0010062705,0.0002818587,0.00048251258,0.00018387965,0.0007366674,0.00028077344,0.00016398264],"category_scores_gemma":[0.0013670732,0.00053442566,0.00036342096,0.00080014195,0.0001430952,0.0007002816,0.0001295429,0.00022049388,0.000024664463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038053056,0.0004041503,0.00018353631,0.0012874348,0.00004794882,0.0000035286432,0.00025166565,0.00036221862,0.98097485,0.0002748578,0.000214295,0.012190201],"study_design_scores_gemma":[0.0058910367,0.000783696,0.00021691184,0.00073689455,0.00009086373,0.0000046992745,0.00018434506,0.019789293,0.9670544,0.0019232436,0.0027437075,0.0005808529],"about_ca_topic_score_codex":0.000048482943,"about_ca_topic_score_gemma":0.000011191555,"teacher_disagreement_score":0.25667033,"about_ca_system_score_codex":0.00027775386,"about_ca_system_score_gemma":0.000557852,"threshold_uncertainty_score":0.99971074},"labels":[],"label_agreement":null},{"id":"W4388421410","doi":"10.1002/cpz1.922","title":"Using ExpressAnalyst for Comprehensive Gene Expression Analysis in Model and Non‐Model Organisms","year":2023,"lang":"en","type":"review","venue":"Current Protocols","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Normalization (sociology); Computer science; DNA microarray; Computational biology; Gene expression profiling; Protocol (science); Data mining; Biology; Gene expression; Gene; Genetics","score_opus":0.33149266847038483,"score_gpt":0.48557697794772686,"score_spread":0.15408430947734203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388421410","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013448081,0.70068586,0.22854829,0.000004183367,0.00007940783,0.07012463,0.0003647405,0.00004001615,0.00001841854],"genre_scores_gemma":[0.00016772615,0.8085165,0.007131174,0.00001495384,0.00022302991,0.18217996,0.0014831015,0.00012344074,0.00016011114],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99765056,0.00011143554,0.00072489365,0.0009909425,0.00019951633,0.0003226208],"domain_scores_gemma":[0.9984754,0.000020278214,0.00051195227,0.0007177597,0.00014799443,0.0001266272],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001965589,0.00044990054,0.0011611456,0.000450965,0.00010706847,0.00007009241,0.00035630117,0.00039582772,0.0000029599466],"category_scores_gemma":[0.00003559008,0.00038677573,0.0004761779,0.00059689564,0.000050564628,0.000008438612,0.00029846546,0.00019650989,0.0000021882254],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024832174,0.00061354827,0.00009237103,0.054159433,0.0014204691,0.0000030142266,0.00022519345,0.08479893,0.63282204,0.00006692725,0.00917471,0.21637504],"study_design_scores_gemma":[0.0022059334,0.00014005376,0.000011461067,0.016463106,0.0031299887,0.0000036951963,0.00005631086,0.35406086,0.023656465,0.00028513357,0.5981079,0.00187908],"about_ca_topic_score_codex":0.0000015173083,"about_ca_topic_score_gemma":0.0000040203536,"teacher_disagreement_score":0.6091656,"about_ca_system_score_codex":0.00006274366,"about_ca_system_score_gemma":0.00037919718,"threshold_uncertainty_score":0.99985844},"labels":[],"label_agreement":null},{"id":"W4390348141","doi":"10.1002/cpz1.965","title":"Production of CRISPR‐Cas9 Transgenic Cell Lines for Knocksideways Studies","year":2023,"lang":"en","type":"article","venue":"Current Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of General Medical Sciences; University of Washington; National Institutes of Health; National Science Foundation","keywords":"CRISPR; Context (archaeology); Synthetic biology; Computational biology; Green fluorescent protein; Transgene; Genome editing; Cas9; Biology; Computer science; Gene; Genetics","score_opus":0.08593432879648592,"score_gpt":0.45444643934458995,"score_spread":0.368512110548104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390348141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75724465,0.012123907,0.0531047,0.00045957364,0.003047751,0.17348166,0.00013005087,0.00024283554,0.00016484727],"genre_scores_gemma":[0.7708696,0.0012968424,0.0015671855,0.000013762982,0.0016202445,0.22267607,0.00018845487,0.00007560175,0.0016922391],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992012,0.000014917393,0.00023516944,0.00026734165,0.000092422146,0.0001889853],"domain_scores_gemma":[0.9994848,0.00001155676,0.00005837523,0.00023907248,0.00017350723,0.00003269982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020401852,0.00012385215,0.0001560454,0.000053309926,0.000044996552,0.00000649788,0.00010984192,0.000057625643,0.0000023224256],"category_scores_gemma":[0.0001224375,0.00011323569,0.00011419806,0.00013622081,0.000034919034,0.0000026612952,0.00004184528,0.000047829726,0.0000047424774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006879215,0.00007817797,0.00028639598,0.0016310215,0.000037802827,1.1561801e-7,0.00018274949,0.001014706,0.96737534,0.000015537837,0.015193248,0.014116089],"study_design_scores_gemma":[0.0004043424,0.00023747492,0.00021965805,0.00008258122,0.000016331178,6.310383e-7,0.00009237039,0.000058403533,0.86673754,0.00009375549,0.1319405,0.000116400864],"about_ca_topic_score_codex":2.9680382e-7,"about_ca_topic_score_gemma":0.0000024925469,"teacher_disagreement_score":0.116747245,"about_ca_system_score_codex":0.0000052988353,"about_ca_system_score_gemma":0.00003614044,"threshold_uncertainty_score":0.46176177},"labels":[],"label_agreement":null},{"id":"W4390949004","doi":"10.1002/cpz1.913","title":"Environmental Enrichment Cage for Laboratory Mice: A Downloadable Alternative","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Human-Animal Interaction Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Brain Institute; University of Ottawa","funders":"","keywords":"Environmental enrichment; Protocol (science); Standardization; Computer science; Cognition; Neuroscience; Risk analysis (engineering); Psychology; Medicine; Pathology","score_opus":0.031896779641878634,"score_gpt":0.40735670739395585,"score_spread":0.3754599277520772,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390949004","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5259434,0.032288708,0.01953386,0.00090297894,0.005872461,0.40330136,0.005725674,0.0004344741,0.0059970617],"genre_scores_gemma":[0.63833785,0.00014525498,0.00037080573,0.00015670234,0.0012292479,0.35711065,0.0002005154,0.00004872301,0.002400238],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991002,0.000031063693,0.00017962842,0.000380897,0.00011386822,0.0001943452],"domain_scores_gemma":[0.9996947,0.000016595968,0.000047600483,0.0001597179,0.000031146585,0.000050237082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011968456,0.00015306739,0.00011092194,0.000035353627,0.00008366497,0.00006913901,0.0001220234,0.000044935427,0.00010638893],"category_scores_gemma":[0.000022749446,0.00013609062,0.00009219235,0.0000374752,0.000051319745,0.000009655811,0.0001111547,0.00009489166,0.00011959279],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000159087,0.00025048494,0.00035010095,0.0002908405,0.00019006302,0.0000030469469,0.00026711074,0.000008166021,0.90337735,0.00031739715,0.086379305,0.008407052],"study_design_scores_gemma":[0.00026986504,0.00025626083,0.000092561706,0.00006837868,0.00001104628,0.0000015624078,0.000057991754,0.00004615924,0.25540268,0.000039224342,0.7436273,0.00012694664],"about_ca_topic_score_codex":0.0000013608095,"about_ca_topic_score_gemma":0.000002540391,"teacher_disagreement_score":0.657248,"about_ca_system_score_codex":0.00006539629,"about_ca_system_score_gemma":0.000047370093,"threshold_uncertainty_score":0.5549614},"labels":[],"label_agreement":null},{"id":"W4391316051","doi":"10.1002/cpz1.975","title":"Three‐Dimensional Cell Culture of Epididymal Basal Cells and Organoids: A Novel Tool for Toxicology","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Sperm and Testicular Function","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research","keywords":"Epididymis; Cell biology; Organoid; Epithelium; Biology; Stem cell; Immortalised cell line; Stereocilia (inner ear); Cell type; Sperm; Cell culture; Cell; Anatomy; Hair cell; Biochemistry; Genetics","score_opus":0.04165210387542736,"score_gpt":0.3356957394169673,"score_spread":0.29404363554153995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391316051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44319668,0.003961974,0.10674343,0.0010764991,0.0035087832,0.4396813,0.000564326,0.00048073055,0.00078627386],"genre_scores_gemma":[0.5597647,0.00003311343,0.041562613,0.000836661,0.0039965427,0.3905634,0.00044623984,0.00023264452,0.0025641185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999093,0.000010181114,0.00024877084,0.00030158405,0.00016256339,0.00018391057],"domain_scores_gemma":[0.999492,0.00009955611,0.00005182908,0.00014861317,0.00012813338,0.00007990708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016686817,0.00014555386,0.00024859174,0.000066980494,0.000038632916,0.000020055886,0.000042354146,0.00011492553,0.00019901857],"category_scores_gemma":[0.00009388049,0.00010687379,0.00009662308,0.00012473736,0.00006689687,0.00006273308,0.000040658306,0.00017223101,0.000018488548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050179893,0.0009661777,0.0028930535,0.0047308626,0.000060057395,0.000011477723,0.00020265761,0.000006315404,0.94965434,0.0016116815,0.023890037,0.015471543],"study_design_scores_gemma":[0.008748545,0.0047124075,0.007229341,0.0024384232,0.0004268681,0.00012332897,0.00003692216,0.009801522,0.63345104,0.001425696,0.33111727,0.00048864045],"about_ca_topic_score_codex":0.0000013814222,"about_ca_topic_score_gemma":8.6497704e-7,"teacher_disagreement_score":0.31620333,"about_ca_system_score_codex":0.00003213195,"about_ca_system_score_gemma":0.00017090717,"threshold_uncertainty_score":0.43581867},"labels":[],"label_agreement":null},{"id":"W4391325391","doi":"10.1002/cpz1.972","title":"Recovering Misidentified Samples Through Genetic Discordance Clustering","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Multiple Sclerosis Society; Multiple Sclerosis Society of Canada; European Genomic Institute for Diabetes","keywords":"Genotyping; Sample (material); Protocol (science); Computer science; Quality assurance; Guideline; Data science; Medicine; Biology; Pathology; Genetics; Genotype; External quality assessment; Alternative medicine","score_opus":0.07448014551770323,"score_gpt":0.3835014261622324,"score_spread":0.30902128064452916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391325391","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42237702,0.00844698,0.5293873,0.0005367674,0.0023395368,0.035265114,0.000105374944,0.0001695393,0.0013723995],"genre_scores_gemma":[0.8907208,0.00061321206,0.022663867,0.0001537408,0.002028802,0.081653446,0.00024923377,0.00010239283,0.0018145264],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986877,0.00008194293,0.00032974637,0.00048695304,0.00009657636,0.00031710777],"domain_scores_gemma":[0.999464,0.000027852951,0.0000708368,0.0003475948,0.000037715807,0.000052010673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020441478,0.00016951235,0.00016919985,0.000029150748,0.00009465309,0.00010075732,0.00020878977,0.000092495975,0.000054222757],"category_scores_gemma":[0.00013503991,0.00015741379,0.00012338883,0.00010083701,0.00004776046,0.000008050724,0.00017075114,0.000121604025,0.00005687922],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016019611,0.00031342552,0.07867276,0.0023315016,0.00039733117,0.000019353405,0.0006779022,0.0051151523,0.49114516,0.0011596911,0.07569814,0.3443094],"study_design_scores_gemma":[0.00044599577,0.00017636573,0.039938018,0.0005534745,0.00002889897,0.000028356182,0.000048098893,0.0020732486,0.01250367,0.0032253726,0.940473,0.00050550007],"about_ca_topic_score_codex":0.000015422034,"about_ca_topic_score_gemma":0.00003217105,"teacher_disagreement_score":0.8647749,"about_ca_system_score_codex":0.000028807246,"about_ca_system_score_gemma":0.000079069956,"threshold_uncertainty_score":0.6419148},"labels":[],"label_agreement":null},{"id":"W4391613735","doi":"10.1002/cpz1.974","title":"Methods for the Design and Analysis of Analytical Ultracentrifugation Experiments","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Protein purification and stability","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"National Institute of General Medical Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; University of Lethbridge; National Science Foundation","keywords":"Analytical Ultracentrifugation; Ultracentrifuge; Sedimentation; Chromatography; Computer science; Chemistry; Biology","score_opus":0.12146477070838585,"score_gpt":0.498812491643933,"score_spread":0.37734772093554714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391613735","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00091789936,0.003468647,0.9682333,0.00008671041,0.00003775383,0.02721269,0.000020023363,0.0000068673603,0.00001612337],"genre_scores_gemma":[0.51569825,0.0002787505,0.10349655,0.0000572186,0.0001928931,0.37966427,0.00026266577,0.000031539315,0.00031783545],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933875,0.0001419625,0.00017413206,0.00021017717,0.00005617134,0.00007878542],"domain_scores_gemma":[0.99953526,0.00011573606,0.000038301558,0.00021778261,0.00006331318,0.000029629404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008196604,0.00006322305,0.00010095695,0.000042655916,0.0000394903,0.000033417007,0.00008863074,0.00004077401,0.000014137339],"category_scores_gemma":[0.00020492049,0.000041930554,0.000098600154,0.0001954478,0.000065544526,0.0000031130144,0.000021124477,0.000036063808,3.5278612e-7],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003030136,0.00022837856,0.0015584991,0.00033362955,0.0010346302,6.7215495e-8,0.0002325446,0.00020694443,0.23668523,0.007271027,0.0006785106,0.7514675],"study_design_scores_gemma":[0.00032980708,0.00017202129,0.0028693373,0.000032516848,0.0003954812,4.236332e-7,0.000027045364,0.15295212,0.44385692,0.00047218232,0.39877066,0.00012149998],"about_ca_topic_score_codex":4.877802e-7,"about_ca_topic_score_gemma":1.3569871e-7,"teacher_disagreement_score":0.86473674,"about_ca_system_score_codex":0.000007170082,"about_ca_system_score_gemma":0.000042042415,"threshold_uncertainty_score":0.17098783},"labels":[],"label_agreement":null},{"id":"W4391933665","doi":"10.1002/cpz1.993","title":"A Mouse Model for Eosinophilic Esophagitis (EoE)","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Eosinophilic Esophagitis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cancer Biology Research Center, Tel Aviv University; Tel Aviv University; Azrieli Foundation; Israel Cancer Research Fund; Israel Science Foundation; Israel Cancer Association; National Science Foundation","keywords":"Eosinophilic esophagitis; Medicine; Gastroenterology; Dermatology; Internal medicine; Disease","score_opus":0.09612290514415542,"score_gpt":0.4158640011662614,"score_spread":0.319741096022106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391933665","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.034295887,0.01534018,0.08862167,0.0065169153,0.0017032522,0.8436464,0.0015676792,0.004208663,0.004099363],"genre_scores_gemma":[0.25381294,0.000060998053,0.0051800623,0.00049247424,0.0016352707,0.72741187,0.00021232049,0.00024370286,0.010950374],"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9976365,0.000029089493,0.000540643,0.0007574327,0.000443178,0.00059316366],"domain_scores_gemma":[0.9986169,0.000107446685,0.0000681939,0.00067965337,0.00019906696,0.00032873833],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029416618,0.00036383222,0.0004883968,0.00026231594,0.00010770804,0.00017707315,0.0002308844,0.00015483749,0.00014259084],"category_scores_gemma":[0.00017696737,0.00032627402,0.00035085398,0.00031921937,0.0001244134,0.00028664668,0.00009113268,0.00042696623,0.00027247786],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010887728,0.0027927002,0.0025622398,0.027661532,0.0004943332,0.0002557326,0.0024771248,0.00026100746,0.03631099,0.060834054,0.16117787,0.7040836],"study_design_scores_gemma":[0.009528025,0.0022119503,0.00069184747,0.008388837,0.0005063409,0.00034839645,0.00002518254,0.49414936,0.06563531,0.026522635,0.3905173,0.0014748399],"about_ca_topic_score_codex":0.0000024723745,"about_ca_topic_score_gemma":0.000001499484,"teacher_disagreement_score":0.7026088,"about_ca_system_score_codex":0.00021462461,"about_ca_system_score_gemma":0.00047538657,"threshold_uncertainty_score":0.99991894},"labels":[],"label_agreement":null},{"id":"W4391945113","doi":"10.1002/cpz1.994","title":"In Vivo Cardiac Electrophysiology in Mice: Determination of Atrial and Ventricular Arrhythmic Substrates","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cardiac electrophysiology and arrhythmias","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Heart Institute","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health; American Heart Association","keywords":"Electrophysiology; Cardiac electrophysiology; Cardiology; Internal medicine; In vivo; Medicine; Biology","score_opus":0.01463970757147049,"score_gpt":0.33165801967703307,"score_spread":0.3170183121055626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391945113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97105664,0.004167485,0.000018136107,0.00008872305,0.000231055,0.024374578,0.000009463505,0.000021647547,0.000032290904],"genre_scores_gemma":[0.9833597,0.00026846505,0.00005276599,0.000010336207,0.0005804165,0.015673239,0.000014663855,0.000015150151,0.000025254454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988854,0.00012604689,0.00033217773,0.0003053844,0.00009790285,0.0002530768],"domain_scores_gemma":[0.9996579,0.00009567927,0.00005367692,0.000119130906,0.000033189044,0.0000404167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019636007,0.00013963788,0.0004446802,0.00026484035,0.000014961102,0.000009686424,0.00003454468,0.0001157063,0.000024631176],"category_scores_gemma":[0.00004810566,0.00012226448,0.00016233594,0.00036873986,0.000077173856,0.00009703523,0.000023255157,0.00033421637,0.0000069042267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017864925,0.00018999826,0.0054049175,0.0026297318,0.00007425225,0.0012088021,0.00031059055,0.000030977542,0.934181,0.0020290425,0.0003292891,0.05182493],"study_design_scores_gemma":[0.010255375,0.0046763667,0.061968762,0.0056768535,0.00032748675,0.00089298614,0.00006549188,0.0043901284,0.8671895,0.01701849,0.026503759,0.00103477],"about_ca_topic_score_codex":0.00000706602,"about_ca_topic_score_gemma":0.0000021166175,"teacher_disagreement_score":0.06699145,"about_ca_system_score_codex":0.00007594724,"about_ca_system_score_gemma":0.00014599244,"threshold_uncertainty_score":0.4985801},"labels":[],"label_agreement":null},{"id":"W4393045409","doi":"10.1002/cpz1.1007","title":"Optimized Recombinant Expression and Purification of the SARS‐CoV‐2 Polymerase Complex","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Windsor","funders":"","keywords":"Recombinant DNA; Sf9; Biology; Polymerase; Fusion protein; RNA polymerase; Escherichia coli; Maltose-binding protein; T7 RNA polymerase; Computational biology; Cell biology; Biochemistry; Enzyme; Gene","score_opus":0.15009474640550907,"score_gpt":0.4491037190867512,"score_spread":0.2990089726812421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393045409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63886386,0.005046086,0.0022806823,0.0037201967,0.0009831422,0.34589025,0.000057732042,0.00035598263,0.0028020802],"genre_scores_gemma":[0.6951966,0.00003591887,0.001411772,0.0032752121,0.00043214366,0.2993213,0.000026084213,0.0001019543,0.00019896746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987548,0.00011161511,0.00029842183,0.00029199393,0.0003512532,0.00019190506],"domain_scores_gemma":[0.9993125,0.00007647352,0.00006928973,0.0004345896,0.00007961793,0.000027513082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031808185,0.00012750864,0.000226542,0.00010400259,0.00007519842,0.000058672966,0.00016524423,0.000058427348,0.000019172641],"category_scores_gemma":[0.00011284946,0.00007609101,0.00009910025,0.00027422374,0.00012918434,0.00008669467,0.000119784716,0.00025857202,0.000019450268],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037873702,0.00029679155,0.0017051544,0.0014600521,0.000016674685,0.0000053239296,0.00022108511,9.238419e-8,0.9384398,0.00041131538,0.0044792173,0.0525858],"study_design_scores_gemma":[0.0016221779,0.00013475749,0.0015781871,0.0019816633,0.000019649731,0.000014389417,0.000017774246,0.0012681126,0.7146383,0.00026562862,0.27837908,0.00008029613],"about_ca_topic_score_codex":0.000011656756,"about_ca_topic_score_gemma":4.323677e-7,"teacher_disagreement_score":0.27389988,"about_ca_system_score_codex":0.000045406865,"about_ca_system_score_gemma":0.0002076396,"threshold_uncertainty_score":0.31029013},"labels":[],"label_agreement":null},{"id":"W4393193489","doi":"10.1002/cpz1.1020","title":"Practical 10‐Color T‐Cell Panel for Phenotyping Diverse Populations Using Spectral Flow Cytometry: A Beginner's Guide","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto","funders":"","keywords":"Flow cytometry; Cytometry; Immune system; Computational biology; Context (archaeology); Biology; Multiplex; Fluorophore; Mass cytometry; Immunology; Computer science; Bioinformatics; Phenotype; Genetics; Physics; Fluorescence","score_opus":0.2488195733948783,"score_gpt":0.4356162102273476,"score_spread":0.18679663683246928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393193489","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0586536,0.00068379665,0.8683368,0.00037901234,0.0019334069,0.06858635,0.00038611353,0.00018353679,0.00085738633],"genre_scores_gemma":[0.66707224,0.0000630384,0.20712978,0.00033776564,0.008720187,0.11045456,0.001996991,0.00037888257,0.0038465736],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986183,0.00004810297,0.00031364957,0.00049188716,0.00014985762,0.00037817674],"domain_scores_gemma":[0.9994151,0.00002821448,0.00006675296,0.0002700119,0.00010128817,0.000118621196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021098976,0.0002221897,0.00018367029,0.000089348294,0.00017661705,0.00016964339,0.00016200608,0.00014418285,0.00006839577],"category_scores_gemma":[0.00013553374,0.00021207322,0.00020934852,0.00018085346,0.00006066708,0.000020512083,0.00007211796,0.00016406873,0.000022510558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066966977,0.00092536956,0.0016879899,0.0014912193,0.00013925906,0.000017071852,0.0001872652,0.0015006381,0.9286152,0.0018965486,0.032420807,0.030448945],"study_design_scores_gemma":[0.0016438133,0.0004516137,0.0001317157,0.0003642048,0.00015651932,0.000023507979,0.000062168685,0.17509931,0.08847212,0.00039607834,0.73256433,0.00063460506],"about_ca_topic_score_codex":0.00000982099,"about_ca_topic_score_gemma":0.000010084624,"teacher_disagreement_score":0.8401431,"about_ca_system_score_codex":0.000066649816,"about_ca_system_score_gemma":0.00024773445,"threshold_uncertainty_score":0.8648095},"labels":[],"label_agreement":null},{"id":"W4393940733","doi":"10.1002/cpz1.1009","title":"Advancing Genetic Alphabet Expansion: Synthesis of 7‐(2‐Thienyl)‐Imidazo[4,5‐b]pyridine (Ds) and 4‐(4‐Pentyne‐1,2‐diol)‐1‐Propynyl‐2‐Nitropyrrole (Diol‐Px) for Use in Replicable Unnatural Base Pairs for PCR Applications","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Xenon Pharmaceuticals (Canada)","funders":"","keywords":"Deoxyribonucleoside; Deoxyribonucleosides; Chemistry; DNA; Combinatorial chemistry; Phosphoramidite; Oligonucleotide; Stereochemistry; Biochemistry","score_opus":0.02705874564142028,"score_gpt":0.34420415821012296,"score_spread":0.31714541256870266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393940733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.601626,0.0080002695,0.22191033,0.00061137363,0.00022988702,0.16596654,0.0012221851,0.0003873944,0.000046043966],"genre_scores_gemma":[0.79449266,0.00036199344,0.046051707,0.000053646083,0.00030558294,0.15832123,0.00027807817,0.000074283285,0.000060803875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978454,0.000068443354,0.0006003416,0.00090122834,0.00015568027,0.0004289203],"domain_scores_gemma":[0.99864733,0.00017624359,0.00018197254,0.0006472609,0.00023152071,0.00011565397],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045923065,0.00031625308,0.00043028747,0.00015890787,0.00012421497,0.0000789757,0.00021761138,0.00018606095,0.0000021132112],"category_scores_gemma":[0.00035856446,0.00027158076,0.0002352969,0.0003199641,0.00014237371,0.00003097308,0.00012753191,0.00015184376,6.489394e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047919297,0.00029126898,0.0012135081,0.0017385336,0.00008891692,0.00000226944,0.000021181204,0.00016017735,0.80694234,0.00015723355,0.0022072077,0.18669818],"study_design_scores_gemma":[0.00061649544,0.00042281876,0.00018108336,0.0007474791,0.00009287952,0.000009982069,0.000040560677,0.0086326925,0.86836535,0.0005497601,0.11995255,0.00038831928],"about_ca_topic_score_codex":0.00000832957,"about_ca_topic_score_gemma":0.000026189817,"teacher_disagreement_score":0.1928667,"about_ca_system_score_codex":0.000045299654,"about_ca_system_score_gemma":0.00010679623,"threshold_uncertainty_score":0.99997365},"labels":[],"label_agreement":null},{"id":"W4394811519","doi":"10.1002/cpz1.1021","title":"Bacterial Pathogenesis: Assessment of Intracellular Positioning of Pathogen‐Containing Vacuoles During Infection","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"","keywords":"Vacuole; Pathogenesis; Intracellular; Pathogen; Microbiology; Biology; Cell biology; Immunology; Cytoplasm","score_opus":0.02776919922400386,"score_gpt":0.37222067081221194,"score_spread":0.3444514715882081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394811519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98600835,0.0005269962,0.0021803102,0.000012656753,0.00021124972,0.010888788,0.000085355394,0.000023521565,0.000062805506],"genre_scores_gemma":[0.9808711,0.00012700107,0.0004775245,9.261634e-7,0.00034911206,0.018004727,0.00013621007,0.000022674976,0.000010738506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987537,0.00013184325,0.0003856221,0.00031267127,0.00019772882,0.00021843115],"domain_scores_gemma":[0.999432,0.000013324061,0.00012840261,0.00023140982,0.00014664486,0.00004816406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003405192,0.00015499214,0.00021884762,0.000099044024,0.00007131705,0.000051304185,0.00011177371,0.00007610038,0.000029588211],"category_scores_gemma":[0.000057649693,0.00014530237,0.00013216618,0.00012661611,0.00006800264,0.000014890141,0.00020704305,0.000106929925,0.0000014441941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010453088,0.000096871336,0.0107595,0.0013612066,0.00009456563,0.000003587655,0.00005664574,0.000018593444,0.9808339,0.00013474739,0.000017922888,0.0065179328],"study_design_scores_gemma":[0.00059223897,0.000639726,0.09811276,0.0011843719,0.000030991676,0.000007831569,0.000025265419,0.0001329275,0.8946249,0.00003277385,0.0044343034,0.00018194411],"about_ca_topic_score_codex":0.0000036887884,"about_ca_topic_score_gemma":0.000002382564,"teacher_disagreement_score":0.08735327,"about_ca_system_score_codex":0.000037951555,"about_ca_system_score_gemma":0.00017216288,"threshold_uncertainty_score":0.5925259},"labels":[],"label_agreement":null},{"id":"W4395677682","doi":"10.1002/cpz1.1039","title":"A Basic Guide to the Propagation and Manipulation of the Clubroot Pathogen, <i>Plasmodiophora brassicae</i>","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs","keywords":"Clubroot; Biology; Pathogen; Microbiology; Botany; Brassica","score_opus":0.03155034134381698,"score_gpt":0.2988908550255232,"score_spread":0.26734051368170625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395677682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9293845,0.0015642107,0.00010667336,0.004790919,0.0002536018,0.06316547,0.00035129598,0.00006406748,0.00031920447],"genre_scores_gemma":[0.97655755,0.0000363474,0.000023793493,0.00012104908,0.00028015353,0.02279498,0.000034562527,0.000001383738,0.00015018787],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99931306,0.0000614222,0.00015718584,0.0001686766,0.0001912836,0.00010836511],"domain_scores_gemma":[0.9997651,0.00004954968,0.00004145371,0.000067171175,0.000035748126,0.000041003797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016575998,0.00007556625,0.000068875925,0.000005381268,0.00011133225,0.00008436456,0.00016332799,0.00002489829,0.000012854621],"category_scores_gemma":[0.000027049264,0.000020263704,0.000049421993,0.00026082952,0.000029931058,0.00004846821,0.00006211726,0.000060104183,0.000011757714],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059243957,0.000086566906,0.0072226045,0.00028934755,0.000010936602,0.0000014392066,0.00011771138,0.00004752209,0.4447017,0.0015649848,0.019886306,0.52601165],"study_design_scores_gemma":[0.00006600188,0.00009219255,0.15752478,0.0005568131,0.000017368513,0.0000032385674,0.00002593129,0.00062126236,0.010472304,0.00072707486,0.8297855,0.00010750143],"about_ca_topic_score_codex":0.000004135569,"about_ca_topic_score_gemma":0.0000808287,"teacher_disagreement_score":0.8098992,"about_ca_system_score_codex":0.0000115298535,"about_ca_system_score_gemma":0.000017604469,"threshold_uncertainty_score":0.08562889},"labels":[],"label_agreement":null},{"id":"W4396692314","doi":"10.1002/cpz1.1040","title":"Minimizing Variability in Developmental Fear Studies in Mice: Toward Improved Replicability in the Field","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Neuroendocrine regulation and behavior","field":"Psychology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"","keywords":"Fear conditioning; Extinction (optical mineralogy); Psychology; Neuroscience; Developmental psychology; Population; Cognitive psychology; Biology; Medicine","score_opus":0.23924295022615916,"score_gpt":0.5087977879774108,"score_spread":0.26955483775125166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396692314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9099194,0.00019498699,0.000031077216,0.0041271634,0.0006873322,0.08429035,0.000007446129,0.00008372019,0.0006585324],"genre_scores_gemma":[0.81311214,0.0000020544376,0.00013127249,0.00012610096,0.000059588598,0.18644042,0.0000033202405,0.000010996718,0.00011410729],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99779737,0.00060679635,0.0005765308,0.00057586876,0.00013975237,0.00030369862],"domain_scores_gemma":[0.99883974,0.0007472001,0.00004524369,0.00031616492,0.000023989887,0.000027678208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013770844,0.00016133717,0.00023708736,0.00014417726,0.000025610705,0.00004770861,0.00024967937,0.000047203,0.0001766195],"category_scores_gemma":[0.00049362844,0.00011797092,0.00006236145,0.0005177905,0.00006912871,0.00010349603,0.00010525683,0.0005134334,0.000030636533],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044278958,0.002811021,0.6195757,0.0016412026,0.000024564424,0.00021800201,0.025495073,0.0000016663485,0.002692226,0.0022417794,0.00823952,0.3366165],"study_design_scores_gemma":[0.0030121696,0.00028348085,0.85538065,0.0011418625,0.000015312202,0.000060538536,0.0044550346,0.00020624393,0.0024989867,0.0024358775,0.1299752,0.0005346411],"about_ca_topic_score_codex":0.000040987616,"about_ca_topic_score_gemma":0.00009630093,"teacher_disagreement_score":0.33608183,"about_ca_system_score_codex":0.00019500288,"about_ca_system_score_gemma":0.000080965365,"threshold_uncertainty_score":0.48107144},"labels":[],"label_agreement":null},{"id":"W4396695661","doi":"10.1002/cpz1.1012","title":"Establishment of Transgene‐Free Porcine Induced Pluripotent Stem Cells","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"Alberta Children's Hospital Research Institute; Natural Sciences and Engineering Research Council of Canada; Faculty of Veterinary Medicine, University of Calgary; Canada Research Chairs","keywords":"Reprogramming; Biology; Induced pluripotent stem cell; SOX2; Transgene; KLF4; Homeobox protein NANOG; Cell biology; Somatic cell; Molecular biology; Embryonic stem cell; Computational biology; Genetics; Cell; Gene","score_opus":0.05295101710787135,"score_gpt":0.3455012925100752,"score_spread":0.29255027540220385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396695661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8153994,0.0078571085,0.0063669104,0.0007337614,0.0016813568,0.16482359,0.0005630717,0.00019108852,0.0023837122],"genre_scores_gemma":[0.93171644,0.000272207,0.00026375987,0.000029424033,0.0005387591,0.06527479,0.000121032346,0.000096077936,0.0016875003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977814,0.00011598153,0.00049602415,0.0006281074,0.0005348091,0.00044365675],"domain_scores_gemma":[0.99871945,0.000017079701,0.00008263764,0.0008546819,0.00014669469,0.00017944361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040964427,0.00026221428,0.0002668007,0.0001442668,0.000046244983,0.00008120482,0.00066317426,0.00014694982,0.00007307526],"category_scores_gemma":[0.000016517619,0.00022740515,0.00021059247,0.0002724884,0.00007219078,0.000011916203,0.0002972677,0.00024458245,0.000043127962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012062463,0.00025292722,0.00018283243,0.0013332436,0.00006673755,0.000010644744,0.000051079987,0.000035557285,0.95251817,0.00011297499,0.0067439615,0.038571276],"study_design_scores_gemma":[0.0007252191,0.0005232026,0.00007802842,0.00040028436,0.00001542371,0.000005557748,0.000022824242,0.00013448941,0.7952297,0.000048955215,0.20261697,0.00019934578],"about_ca_topic_score_codex":0.0000072032913,"about_ca_topic_score_gemma":0.000004806571,"teacher_disagreement_score":0.195873,"about_ca_system_score_codex":0.000047075893,"about_ca_system_score_gemma":0.00029023344,"threshold_uncertainty_score":0.9273313},"labels":[],"label_agreement":null},{"id":"W4396797133","doi":"10.1002/cpz1.1035","title":"Isolation and Identification of Nematode‐Infecting Microsporidia","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Microsporidia; Biology; Microsporidiosis; Identification (biology); Nematode; Spore; DNA extraction; Computational biology; Polymerase chain reaction; Microbiology; Genetics; Ecology; Gene","score_opus":0.02651924918903975,"score_gpt":0.36247230852011203,"score_spread":0.3359530593310723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396797133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9167398,0.005828635,0.03876263,0.000070808564,0.0024020043,0.03500992,0.00005633417,0.0002462105,0.0008836417],"genre_scores_gemma":[0.9911552,0.000026482803,0.000028513214,0.0000030116967,0.000037264264,0.0086149685,0.000039099425,0.0000069613175,0.00008848928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994225,0.000039927352,0.00026542475,0.00015173681,0.000016287968,0.00010411841],"domain_scores_gemma":[0.9996217,0.00013215117,0.000073655596,0.00010840144,0.00005527472,0.000008818118],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022913331,0.00007201944,0.00010367433,0.00008489839,0.00007854698,0.000036221812,0.00003625887,0.00006889904,0.00006211425],"category_scores_gemma":[0.00011703985,0.000065795844,0.00003488439,0.00011455166,0.00006662348,0.00010913275,0.000021794876,0.00012284184,0.00014300145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001949699,0.00016918126,0.043791544,0.00083981466,0.000052168474,9.65551e-7,0.0004897394,0.00001016791,0.86983424,0.025731416,0.0020259358,0.05703534],"study_design_scores_gemma":[0.0012297957,0.0002495156,0.102167234,0.0017788771,0.000121793826,0.00013979382,0.00008650228,0.0006522569,0.7459115,0.0042755785,0.14298104,0.00040614099],"about_ca_topic_score_codex":0.000006297857,"about_ca_topic_score_gemma":8.6894187e-7,"teacher_disagreement_score":0.1409551,"about_ca_system_score_codex":0.000014698511,"about_ca_system_score_gemma":0.00003767876,"threshold_uncertainty_score":0.26830766},"labels":[],"label_agreement":null},{"id":"W4399359132","doi":"10.1002/cpz1.1064","title":"Rearing and Experimental Uses of <i>Daphnia</i>: Controlling Animal Nutrition and Assessing Lifespan and Life‐History Traits","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Aquatic Ecosystems and Phytoplankton Dynamics","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trent University","funders":"","keywords":"Daphnia; Biology; Longevity; Organism; Model organism; Life history theory; Branchiopoda; Zoology; Ecology; Daphnia magna; Life history; Cladocera; Crustacean; Genetics","score_opus":0.04612965868841011,"score_gpt":0.31739306877958917,"score_spread":0.27126341009117905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399359132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9790656,0.0065351473,0.00034161797,0.000023299015,0.00010731069,0.013488209,0.0000134050815,0.00003950493,0.00038588626],"genre_scores_gemma":[0.9930828,0.00003671545,0.00040074435,0.000010416958,0.00006851509,0.0063740863,0.0000023337325,0.000012632421,0.00001176091],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99915403,0.00004930954,0.00024373559,0.0002731839,0.00014378472,0.00013594318],"domain_scores_gemma":[0.99967736,0.00007119997,0.00007756044,0.00006476446,0.0000045695815,0.00010456827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023300166,0.00012334871,0.00019428019,0.000032849388,0.00006685983,0.00009358491,0.00004579219,0.000044218803,0.000048993894],"category_scores_gemma":[0.000019301251,0.00011355331,0.000022945122,0.000047519836,0.0001413989,0.00036902766,0.00008002958,0.000109148124,0.0000023675066],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043572465,0.001200554,0.3049422,0.012316337,0.0001596805,0.00003598623,0.012153947,0.00009792879,0.5591906,0.008893374,0.003190157,0.09738353],"study_design_scores_gemma":[0.011635853,0.002454555,0.23011665,0.022032496,0.0002660251,0.00026897373,0.0028738568,0.32638532,0.022443714,0.0017359196,0.37704796,0.0027386853],"about_ca_topic_score_codex":0.000023728855,"about_ca_topic_score_gemma":0.000008065824,"teacher_disagreement_score":0.53674686,"about_ca_system_score_codex":0.000066426845,"about_ca_system_score_gemma":0.000019060319,"threshold_uncertainty_score":0.46305698},"labels":[],"label_agreement":null},{"id":"W4399805424","doi":"10.1002/cpz1.1087","title":"Analysis of Globotriaosylceramide (Gb<sub>3</sub>) in Liquid Urine: A Straightforward Assay Using Tandem Mass Spectrometry","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Lysosomal Storage Disorders Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"","keywords":"Creatinine; Chemistry; Chromatography; Urine; Globotriaosylceramide; Tandem mass spectrometry; Liquid chromatography–mass spectrometry; Detection limit; Mass spectrometry; Internal medicine; Fabry disease; Medicine; Biochemistry","score_opus":0.06107941044939981,"score_gpt":0.39835685620565636,"score_spread":0.33727744575625657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399805424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9032364,0.0016506412,0.01434461,0.00020477564,0.00018263404,0.07899715,0.00007811592,0.00018099864,0.0011246647],"genre_scores_gemma":[0.9747094,0.00008699905,0.00078045984,0.000017737253,0.00023447495,0.023992006,0.000074185,0.00006542958,0.000039342343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964873,0.00021069338,0.0008448981,0.00068033853,0.0011188494,0.0006579058],"domain_scores_gemma":[0.99872965,0.00014312107,0.00013980205,0.0005498159,0.00019162877,0.00024597518],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011521494,0.00032001938,0.000967014,0.0021203845,0.000047430905,0.00010249123,0.00028442466,0.00017277854,0.0004515461],"category_scores_gemma":[0.0004116261,0.00027987224,0.0005302659,0.0063266377,0.00012725941,0.00022835581,0.00013281209,0.00073982857,0.000034198056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001688654,0.0017315118,0.11618155,0.0047739437,0.0028033673,0.000594832,0.00041198885,0.00065626757,0.8147544,0.00097645965,0.00036104402,0.055065956],"study_design_scores_gemma":[0.013979145,0.005063111,0.14429235,0.012659929,0.0051751127,0.00011309461,0.00035699815,0.19089381,0.6071435,0.0017713609,0.01624826,0.002303263],"about_ca_topic_score_codex":0.000027230626,"about_ca_topic_score_gemma":0.000023201452,"teacher_disagreement_score":0.20761088,"about_ca_system_score_codex":0.00073869043,"about_ca_system_score_gemma":0.0006161087,"threshold_uncertainty_score":0.99996537},"labels":[],"label_agreement":null},{"id":"W4401364041","doi":"10.1002/cpz1.1113","title":"Current Protocols: Alopecia Areata Mouse Models for Drug Efficacy and Mechanism Studies","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Hair Growth and Disorders","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Alopecia Areata Foundation","keywords":"Alopecia areata; Mechanism (biology); Drug; Medicine; Dermatology; Pharmacology","score_opus":0.16843616273112352,"score_gpt":0.4552800966067952,"score_spread":0.28684393387567164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401364041","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038974872,0.009048847,0.012053252,0.00077351974,0.00039592464,0.9727202,0.00015775327,0.00061921397,0.00033381],"genre_scores_gemma":[0.010800656,0.00022137964,0.00062872254,0.00006674231,0.00048865145,0.98721075,0.00006937401,0.00008068281,0.00043301345],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975943,0.00005991731,0.0005577753,0.0008038727,0.0004168112,0.00056732126],"domain_scores_gemma":[0.99869263,0.00016563898,0.000081974,0.00049588067,0.00022890414,0.0003349808],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00047014747,0.0004327294,0.0006348166,0.00022607674,0.00017482527,0.00017018686,0.00019595299,0.00008057385,0.000027269183],"category_scores_gemma":[0.00026945648,0.0003304302,0.00018684872,0.00026469992,0.0001266696,0.00034355145,0.00017264418,0.00037562693,0.000044444467],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024813388,0.0032510685,0.00063325715,0.05323057,0.0006017723,0.000037710077,0.007200736,0.000041610485,0.0010067577,0.103317626,0.1156745,0.71252304],"study_design_scores_gemma":[0.0115441745,0.0012919373,0.00007814845,0.013179512,0.00027084723,0.000021385225,0.0005011314,0.009676556,0.005120181,0.044384513,0.91309637,0.00083524204],"about_ca_topic_score_codex":0.0000018250049,"about_ca_topic_score_gemma":0.0000050319495,"teacher_disagreement_score":0.7974219,"about_ca_system_score_codex":0.000105181636,"about_ca_system_score_gemma":0.00031353108,"threshold_uncertainty_score":0.99991477},"labels":[],"label_agreement":null},{"id":"W4401482693","doi":"10.1002/cpz1.1120","title":"Setting Up the JBrowse 2 Genome Browser","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Human Genome Research Institute; National Institutes of Health","keywords":"Computational biology; Genome; Computer science; Biology; Genetics; Gene","score_opus":0.03264182508206101,"score_gpt":0.33843504463915963,"score_spread":0.3057932195570986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401482693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7034362,0.07321047,0.005505225,0.0037229036,0.005597024,0.1955543,0.00036423907,0.00015465792,0.0124549735],"genre_scores_gemma":[0.89977735,0.0002810437,0.0002138831,0.0002497736,0.0021298947,0.09513633,0.00005647421,0.00006278083,0.002092444],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99910593,0.00004400599,0.00017786793,0.0003283276,0.00010048124,0.00024339485],"domain_scores_gemma":[0.9995179,0.000015647556,0.000033748234,0.00034199664,0.00004504763,0.00004562927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022800051,0.00015100367,0.000092520946,0.000020717276,0.00013726964,0.000108910404,0.00025735822,0.000051442068,0.00002803343],"category_scores_gemma":[0.000032101132,0.00010129594,0.00010874275,0.000079263606,0.00006935324,8.901178e-7,0.00021344039,0.000121778285,0.00006356204],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054944812,0.00007279215,0.0022451575,0.0004468422,0.00020087187,0.000003974689,0.0006223082,0.000097525306,0.86256015,0.001460795,0.029458828,0.10277582],"study_design_scores_gemma":[0.00015973709,0.00008493501,0.00229589,0.000055980086,0.000012710196,0.000007387688,0.000033576325,0.0000607259,0.016395483,0.0003673094,0.9803699,0.00015631081],"about_ca_topic_score_codex":0.0000014175597,"about_ca_topic_score_gemma":0.0000024502574,"teacher_disagreement_score":0.9509111,"about_ca_system_score_codex":0.00001034592,"about_ca_system_score_gemma":0.00007597205,"threshold_uncertainty_score":0.41307285},"labels":[],"label_agreement":null},{"id":"W4401713791","doi":"10.1002/cpz1.1126","title":"Choosing Suitable Color Palettes for Accessible and Accurate Science Figures","year":2024,"lang":"en","type":"review","venue":"Current Protocols","topic":"Color Science and Applications","field":"Physics and Astronomy","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Norges Forskningsråd","keywords":"Computer science; Computer graphics (images); Artificial intelligence","score_opus":0.18397515383455834,"score_gpt":0.524666996029308,"score_spread":0.3406918421947497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401713791","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000006909251,0.86454445,0.00083721755,0.000044765035,0.00018590313,0.13280077,0.00029841665,0.00005956155,0.0012219958],"genre_scores_gemma":[0.000022016795,0.222443,0.00028863817,0.000011570072,0.00062154693,0.7759352,0.000071229166,0.000032045482,0.000574759],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983226,0.000018452392,0.00036947968,0.0006682364,0.00018644496,0.00043478058],"domain_scores_gemma":[0.999124,0.000116323004,0.00023054336,0.00033018208,0.000077707235,0.0001212297],"candidate_categories":["scholarly_communication"],"consensus_categories":[],"category_scores_codex":[0.0004324306,0.00029035044,0.0005645944,0.00016322116,0.0004972496,0.0012333707,0.00068359595,0.000045949295,0.00004309869],"category_scores_gemma":[0.000019497676,0.000207538,0.00018785665,0.0008483409,0.00022987167,0.00043677512,0.00028881396,0.00026732282,0.00006196172],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[7.414255e-7,0.00004411796,0.000017334696,0.0072805616,0.000011318179,6.785866e-8,0.000017957085,3.8230758e-7,0.000007356928,0.0107697,0.0042859637,0.9775645],"study_design_scores_gemma":[0.000081737344,0.000024140973,0.0000026847124,0.009311103,0.00014474333,3.464136e-7,0.00001069671,0.00012701498,0.000041737196,0.0022034051,0.98780626,0.00024610525],"about_ca_topic_score_codex":0.0000025494796,"about_ca_topic_score_gemma":3.607923e-7,"teacher_disagreement_score":0.9835203,"about_ca_system_score_codex":0.00004358135,"about_ca_system_score_gemma":0.0006880833,"threshold_uncertainty_score":0.9998034},"labels":[],"label_agreement":null},{"id":"W4401891775","doi":"10.1002/cpz1.1119","title":"Preparation of 2‐Aminoimidazole‐Activated Substrates for the Study of Nonenzymatic Genome Replication","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Origins and Evolution of Life","field":"Physics and Astronomy","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Replication (statistics); Genome; Chemistry; Combinatorial chemistry; Computational biology; Biology; Biochemistry; Gene; Virology","score_opus":0.06996207119136266,"score_gpt":0.4199726402563487,"score_spread":0.350010569064986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401891775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87904435,0.00009654252,0.010454838,0.00004890345,0.0001222949,0.10982536,0.000104572,0.000035242967,0.0002678777],"genre_scores_gemma":[0.90015495,4.481664e-7,0.000035306508,5.074169e-7,0.00013349803,0.09959347,0.00003176845,0.0000076050837,0.000042439387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992354,0.000026440388,0.00035287897,0.00017759851,0.000120341014,0.00008734791],"domain_scores_gemma":[0.9992703,0.00008625943,0.00017227161,0.00034189533,0.00011090324,0.000018350485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000238315,0.00008252831,0.00013101054,0.000040719504,0.00005698706,0.00003495438,0.00012544273,0.000012941527,0.00005606558],"category_scores_gemma":[0.000007140774,0.00005640261,0.00006566059,0.00015809522,0.000023989256,0.00011892005,0.000016794986,0.000058949532,0.0000041488347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012664581,0.01794282,0.12728795,0.009515129,0.0020584776,3.386598e-7,0.022195827,0.009275406,0.33031753,0.24869584,0.009989242,0.22145496],"study_design_scores_gemma":[0.007133973,0.00479041,0.1311294,0.0021251473,0.0006776528,9.688507e-7,0.006318677,0.08277531,0.49182767,0.014203584,0.25788537,0.0011318396],"about_ca_topic_score_codex":0.000016640954,"about_ca_topic_score_gemma":8.5641074e-7,"teacher_disagreement_score":0.24789613,"about_ca_system_score_codex":0.000013720675,"about_ca_system_score_gemma":0.00006124789,"threshold_uncertainty_score":0.23000316},"labels":[],"label_agreement":null},{"id":"W4402241994","doi":"10.1002/cpz1.70000","title":"Genetic Manipulation of <i>Neisseria gonorrhoeae</i> and Commensal <i>Neisseria</i> Species","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Neisseria gonorrhoeae; Neisseria; Biology; Transformation (genetics); Microbiology; Plasmid; Complementation; Genetics; Mutant; Gene; Bacteria","score_opus":0.0443509290673131,"score_gpt":0.32068115401188796,"score_spread":0.2763302249445749,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402241994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97360367,0.003918858,0.00034130976,0.0001208746,0.0020112465,0.01926305,0.00005701093,0.00016455741,0.0005194204],"genre_scores_gemma":[0.9865781,0.00010834455,0.000050103783,0.00001055179,0.00017173932,0.012536135,0.00006289805,0.00002183816,0.00046030647],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991915,0.00007662619,0.00031745067,0.0002310737,0.0000061969804,0.00017713667],"domain_scores_gemma":[0.9996316,0.000047322173,0.000069699,0.00018468281,0.000048544112,0.000018183799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010358726,0.00015218926,0.00021593983,0.000096482596,0.00008827332,0.000063889565,0.00008793472,0.000100296726,0.0006368304],"category_scores_gemma":[0.000012951032,0.00012780496,0.00005976871,0.00015582354,0.00007828765,0.00012798427,0.00006588575,0.00015125448,0.00010233638],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010592569,0.00012653343,0.017996464,0.0006278738,0.000072567665,1.9786307e-7,0.00020344427,0.0000020614505,0.93742883,0.0052035125,0.006908332,0.03132427],"study_design_scores_gemma":[0.0006894482,0.00025996935,0.05810604,0.00041804163,0.000041413045,0.000058042708,0.000031440413,0.000023509301,0.04430341,0.0004680927,0.89540046,0.00020014506],"about_ca_topic_score_codex":0.000018628787,"about_ca_topic_score_gemma":0.0000075173803,"teacher_disagreement_score":0.8931254,"about_ca_system_score_codex":0.000015041489,"about_ca_system_score_gemma":0.000032851916,"threshold_uncertainty_score":0.69728464},"labels":[],"label_agreement":null},{"id":"W4404187203","doi":"10.1002/cpz1.70047","title":"Analyzing Extracellular Vesicle‐associated DNA Using Transmission Electron Microscopy at the Single EV‐level","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Extracellular vesicles; Transmission electron microscopy; Extracellular vesicle; Vesicle; Electron microscope; Biophysics; Chemistry; Extracellular; Transmission (telecommunications); Materials science; Physics; Cell biology; Molecular physics; Nanotechnology; Optics; Biology; Microvesicles; Computer science; Membrane; Biochemistry; Gene","score_opus":0.051535598257086444,"score_gpt":0.36725706806047914,"score_spread":0.3157214698033927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404187203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9168698,0.031802528,0.024916433,0.00015444105,0.00027711428,0.025666486,0.000083415,0.00011018409,0.00011959137],"genre_scores_gemma":[0.9813224,0.00011853636,0.0008652984,0.000049535447,0.0006964716,0.014121561,0.00046323647,0.00017545054,0.0021874793],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99786395,0.00023151096,0.0004180758,0.00067339116,0.00026321175,0.0005498756],"domain_scores_gemma":[0.9990545,0.000029183795,0.00012572047,0.0005574598,0.000075213684,0.00015792136],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005221449,0.00031602188,0.00019357279,0.00006078218,0.00030605623,0.0002010988,0.00039983867,0.00018003167,0.000082160404],"category_scores_gemma":[0.000079303136,0.00025243306,0.0002736906,0.00028542138,0.00013948338,0.000016826634,0.00012316759,0.00027816842,0.00003782291],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103673585,0.0002546694,0.00034858912,0.0001987889,0.00006535991,0.00001120501,0.000052469466,0.000051451883,0.9820794,0.00003500179,0.0020543765,0.014745001],"study_design_scores_gemma":[0.00040065762,0.00015558633,0.000113395276,0.00045514447,0.00007111856,0.000010784893,0.0000078929015,0.0010524709,0.83855695,0.00011604538,0.15876764,0.0002923288],"about_ca_topic_score_codex":0.00000298912,"about_ca_topic_score_gemma":0.000004489455,"teacher_disagreement_score":0.15671326,"about_ca_system_score_codex":0.00022864126,"about_ca_system_score_gemma":0.00022453224,"threshold_uncertainty_score":0.9999928},"labels":[],"label_agreement":null},{"id":"W4404398136","doi":"10.1002/cpz1.70051","title":"Injection of <i>Ortho</i>‐Functionalized Tetrafluorinated Azobenzene‐Containing siRNAs into Japanese Medaka Embryos for Photocontrolled Gene Silencing","year":2024,"lang":"en","type":"article","venue":"Current Protocols","topic":"Photochromic and Fluorescence Chemistry","field":"Materials Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Gene silencing; Oryzias; Embryo; Biology; Small interfering RNA; RNA interference; Cell biology; Gene; Green fluorescent protein; Transgene; Microinjection; Molecular biology; Genetics; Transfection; RNA","score_opus":0.033422802123387094,"score_gpt":0.3362578311428382,"score_spread":0.3028350290194511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404398136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8567968,0.0008207632,0.005580022,0.000036899874,0.0014038844,0.13407384,0.00012904011,0.0005798463,0.0005788928],"genre_scores_gemma":[0.7158192,0.0000054826623,0.0008236118,0.000019284693,0.00039204606,0.28266266,0.00005367403,0.00004946131,0.00017461315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973461,0.000088046676,0.00088047434,0.0007333443,0.0004668772,0.00048515256],"domain_scores_gemma":[0.99856913,0.00027770468,0.0002870962,0.00040322405,0.00030257937,0.00016026486],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010180837,0.00035617562,0.000580519,0.00015990708,0.0002080689,0.0001756929,0.00039640296,0.00016785922,0.0005482351],"category_scores_gemma":[0.00035466402,0.00031220328,0.00028651409,0.00036970834,0.00012470366,0.00043397624,0.00009751514,0.00026422783,0.00003907801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009153212,0.00015522288,0.000119128636,0.0017942255,0.000036651803,0.000004295464,0.00084983185,0.000103681756,0.9923235,0.00021071677,0.00030076358,0.0031866343],"study_design_scores_gemma":[0.0030432271,0.00037296204,0.0000556405,0.0013876896,0.000057895984,0.000028032407,0.00025400642,0.0046284576,0.98388284,0.00072229217,0.0052031046,0.00036385344],"about_ca_topic_score_codex":0.0000588893,"about_ca_topic_score_gemma":0.000005081389,"teacher_disagreement_score":0.1485888,"about_ca_system_score_codex":0.00022883608,"about_ca_system_score_gemma":0.00044827475,"threshold_uncertainty_score":0.999933},"labels":[],"label_agreement":null},{"id":"W4406868666","doi":"10.1002/cpz1.70093","title":"Quantifying Competitive Fitness in Yeast with High‐Throughput Fluorescence Microscopy Imaging","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Fluorescence microscope; Fluorescence-lifetime imaging microscopy; Throughput; Yeast; Live cell imaging; Microscopy; Fluorescence; Biophysics; Chemistry; Biology; Cell; Computer science; Biochemistry; Optics; Medicine; Pathology; Physics","score_opus":0.019872772165946753,"score_gpt":0.3590845180987904,"score_spread":0.33921174593284364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406868666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.68924224,0.0023156544,0.16866201,0.0011591782,0.0013129327,0.1299404,0.00022698149,0.00016680665,0.006973793],"genre_scores_gemma":[0.975862,0.00003502125,0.0036665346,0.00012840802,0.00007714847,0.019808706,0.000137108,0.000020044004,0.00026502757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990054,0.00005799005,0.00020213886,0.00038686328,0.00009653586,0.00025109164],"domain_scores_gemma":[0.9995043,0.0000061111,0.00006541944,0.00028967642,0.00009445524,0.000040005125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011728329,0.0001564015,0.0001449409,0.00006436059,0.000067659545,0.00004508216,0.00021135555,0.0000502296,0.000010896069],"category_scores_gemma":[0.000028691557,0.00014418387,0.000035583365,0.00019690124,0.00013783693,0.0000057974366,0.00012681416,0.00013250015,0.000006512496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000566091,0.00063570525,0.4264936,0.00068597565,0.000042257336,0.000010233011,0.00013512165,0.0005901735,0.53349864,0.012889421,0.001973519,0.022479232],"study_design_scores_gemma":[0.010663927,0.0005416317,0.28987658,0.0055496884,0.00004343837,0.000025815012,0.00069982355,0.006181326,0.36702704,0.0006402312,0.31718037,0.0015701161],"about_ca_topic_score_codex":0.00001359371,"about_ca_topic_score_gemma":0.0001106065,"teacher_disagreement_score":0.31520686,"about_ca_system_score_codex":0.000033202767,"about_ca_system_score_gemma":0.00017061735,"threshold_uncertainty_score":0.5879648},"labels":[],"label_agreement":null},{"id":"W4407524109","doi":"10.1002/cpz1.70104","title":"Efficient Site‐Directed Mutagenesis Mediated by Primer Pairs with 3’‐Overhangs","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"RNA Interference and Gene Delivery","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Compute Canada","keywords":"Mutagenesis; Primer (cosmetics); Plasmid; Site-directed mutagenesis; Protein engineering; Computational biology; Mutant; Transformation (genetics); Biology; Directed evolution; Genetics; Gene; Chemistry; Biochemistry","score_opus":0.012743447469801175,"score_gpt":0.29514002326802646,"score_spread":0.2823965757982253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407524109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9552259,0.0012120405,0.0037813266,0.0001473922,0.0002090199,0.037424956,0.00013609517,0.00012209342,0.0017412045],"genre_scores_gemma":[0.88682705,0.00006394389,0.0003108202,0.00051683624,0.00018533964,0.1071309,0.0010003297,0.000055217788,0.0039095855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987699,0.00006607643,0.00022832713,0.0004725762,0.00016812871,0.00029499974],"domain_scores_gemma":[0.99924594,0.0000137606585,0.00009092482,0.0004019917,0.00016649817,0.0000808994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000117055126,0.00022291901,0.00018250635,0.000066010885,0.000078872945,0.000041618976,0.00023849941,0.00011673312,0.00006798632],"category_scores_gemma":[0.00005782303,0.0001781986,0.000079047226,0.00024055575,0.000076450044,0.0000026805933,0.000112295056,0.000101514954,0.00004150347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006646621,0.00062112074,0.015702242,0.00017778874,0.00015694978,0.0000034008394,0.000063926025,0.00014195529,0.8605918,0.00001843713,0.107183665,0.0146740405],"study_design_scores_gemma":[0.0014779209,0.00049946754,0.0024772831,0.0003079211,0.00003639871,0.0000021847375,0.000026346144,0.00051641715,0.63211846,0.0000053289255,0.36216778,0.00036450085],"about_ca_topic_score_codex":0.000011375068,"about_ca_topic_score_gemma":0.000007934108,"teacher_disagreement_score":0.2549841,"about_ca_system_score_codex":0.000024035982,"about_ca_system_score_gemma":0.00014810856,"threshold_uncertainty_score":0.7266728},"labels":[],"label_agreement":null},{"id":"W4407987365","doi":"10.1002/cpz1.70109","title":"Engineering Base Changes and Epitope‐Tagged Alleles in Mice Using Cas9 RNA‐Guided Nuclease","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Centre for Phenogenomics","funders":"National Institutes of Health; Ontario Genomics; Genome Canada","keywords":"Nuclease; Epitope; Cas9; RNA; Allele; CRISPR; Biology; Molecular biology; Computational biology; Genetics; Chemistry; DNA; Gene; Antibody","score_opus":0.030973853152653247,"score_gpt":0.37983318373737623,"score_spread":0.34885933058472296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407987365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96756124,0.0026600058,0.010716767,0.00011666194,0.00020831423,0.01860205,0.00001548188,0.00003262896,0.000086850036],"genre_scores_gemma":[0.9792706,0.00022395002,0.003062558,0.00008890464,0.00026967694,0.016914766,0.000031080617,0.000040572282,0.00009789295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992081,0.000023547513,0.00017831245,0.000298319,0.00006114153,0.00023061113],"domain_scores_gemma":[0.99966633,0.000010171389,0.000030868538,0.00019584082,0.000031635773,0.000065176064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014873016,0.00016042926,0.00014757212,0.00010874574,0.000034965506,0.00003437308,0.00011372771,0.00007773933,0.0000068181703],"category_scores_gemma":[0.00009747796,0.00017071722,0.000033384404,0.00012539102,0.000020207981,0.000003817747,0.0001283814,0.000104698884,0.000001078146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038328926,0.000055327582,0.0010597514,0.000446126,0.000016794771,0.0000044862227,0.000051476734,0.002031921,0.974895,0.000061995495,0.0004421043,0.020896703],"study_design_scores_gemma":[0.0017917127,0.00008711667,0.002453048,0.00081527414,0.000021690732,0.000011917205,0.000050027822,0.02047607,0.86699384,0.00002006933,0.10683826,0.00044097603],"about_ca_topic_score_codex":0.000014526072,"about_ca_topic_score_gemma":0.000027838496,"teacher_disagreement_score":0.107901156,"about_ca_system_score_codex":0.000019734063,"about_ca_system_score_gemma":0.000042989628,"threshold_uncertainty_score":0.6961646},"labels":[],"label_agreement":null},{"id":"W4408908307","doi":"10.1002/cpz1.70124","title":"Streaming Long‐Read Sequence Alignments for HLA Predictions Using HLAminer","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Genome British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Computer science; Nanopore sequencing; Human leukocyte antigen; Protocol (science); Software; DNA sequencing; MIT License; Shotgun sequencing; Source code; Hybrid genome assembly; Computational biology; Data mining; Biology; Genetics; Gene; Programming language","score_opus":0.07443846455481846,"score_gpt":0.3725897048677749,"score_spread":0.2981512403129564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408908307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4034759,0.007574955,0.16413298,0.00072799105,0.012960297,0.40190724,0.0011931129,0.001302623,0.006724894],"genre_scores_gemma":[0.6885758,0.00005560554,0.0009325163,0.00018138248,0.0002292914,0.28208813,0.0007628069,0.00006700765,0.027107442],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99841756,0.00012524269,0.00043310336,0.00046015703,0.000036346257,0.0005275859],"domain_scores_gemma":[0.99916023,0.00012271991,0.00016344523,0.00041129073,0.000120572746,0.000021717937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018343017,0.00025155442,0.0003135245,0.00016720714,0.00041781107,0.000034592813,0.00034704414,0.00025264078,0.00021666204],"category_scores_gemma":[0.00008022527,0.00022739111,0.00013354879,0.00020342138,0.00024805535,0.00013937698,0.0001591511,0.00029681227,0.00009542775],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013349741,0.0004879968,0.005558147,0.00022029862,0.00018206985,0.0000014677056,0.00008348704,0.000023309625,0.95921826,0.0017750493,0.0036943185,0.028622104],"study_design_scores_gemma":[0.004735964,0.00034167527,0.00094934215,0.0010912307,0.00016551503,0.000034690664,0.00010570173,0.0002235077,0.3988604,0.0010800562,0.59197634,0.0004355568],"about_ca_topic_score_codex":0.00002548425,"about_ca_topic_score_gemma":0.0000074681757,"teacher_disagreement_score":0.58828205,"about_ca_system_score_codex":0.00012894167,"about_ca_system_score_gemma":0.00018943833,"threshold_uncertainty_score":0.927274},"labels":[],"label_agreement":null},{"id":"W4409783483","doi":"10.1002/cpz1.70133","title":"<i>Cryptococcus neoformans</i> Biofilm Formation and Quantification","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biofilm; Cryptococcus neoformans; Microbiology; Candida albicans; Biology; Cryptococcosis; Corpus albicans; Cryptococcus; Pathogen; Bacteria","score_opus":0.05677484017568814,"score_gpt":0.39574887977621886,"score_spread":0.33897403960053074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409783483","genre_codex":"protocol","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1459165,0.0036207316,0.09130495,0.008491622,0.0019571194,0.66270834,0.000064241256,0.0010505422,0.08488593],"genre_scores_gemma":[0.5218572,0.0003494044,0.0009523372,0.00045728372,0.00024582355,0.4740388,0.000103767474,0.000020284911,0.001975078],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99946254,0.000014612912,0.00020502419,0.0001257944,0.00007450539,0.000117495954],"domain_scores_gemma":[0.99964255,0.000018270583,0.000049802755,0.00015446976,0.0001006278,0.000034258916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001244095,0.00008341356,0.00013296465,0.00011108004,0.00015884242,0.00003740944,0.000026849772,0.00003501652,0.000015678495],"category_scores_gemma":[0.000044776756,0.00006574752,0.000035489633,0.00020647743,0.00004357855,0.00015406978,0.00003087514,0.00010529387,0.000029149069],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040436487,0.0009352647,0.09810942,0.005611742,0.000098118835,0.0000017019365,0.00063832046,0.000004979674,0.03525061,0.05407112,0.0883388,0.71653557],"study_design_scores_gemma":[0.0014891811,0.00020964553,0.051985215,0.00090945425,0.000045351175,0.000007852422,0.00007908209,0.00088739995,0.018055746,0.00072327553,0.9254918,0.00011601518],"about_ca_topic_score_codex":0.0000028893814,"about_ca_topic_score_gemma":0.0000017799427,"teacher_disagreement_score":0.83715296,"about_ca_system_score_codex":0.00003531852,"about_ca_system_score_gemma":0.000033833698,"threshold_uncertainty_score":0.2681106},"labels":[],"label_agreement":null},{"id":"W4409783708","doi":"10.1002/cpz1.70129","title":"Leveraging the MethMotif Toolkit to Characterize Context‐Specific Features and Roles of Methylation Sensitive Transcription Factors","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Transcription factor; Computational biology; Leucine zipper; DNA methylation; Methylation; DNA binding site; Context (archaeology); Genome browser; Biology; Binding site; Computer science; Genetics; DNA; Promoter; Gene; Genomics; Genome; Gene expression","score_opus":0.030022276338443687,"score_gpt":0.30088596674304124,"score_spread":0.27086369040459757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409783708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9758833,0.0003320972,0.009471278,0.00023401785,0.000101255726,0.013853431,0.000042904147,0.000006313027,0.00007537646],"genre_scores_gemma":[0.99608713,0.000041586034,0.00014767825,0.000059201677,0.00004209527,0.0034610238,0.000081658734,0.0000078646535,0.000071740484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993516,0.00007204069,0.000183744,0.00021309961,0.00007037474,0.00010913551],"domain_scores_gemma":[0.99959534,0.000018675628,0.00007790576,0.0001869164,0.00009288945,0.00002829232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001719262,0.00011878653,0.00013639702,0.00004049918,0.00007984723,0.000044103723,0.00010230758,0.000058934103,0.000002223321],"category_scores_gemma":[0.000031285752,0.00008886678,0.000058736307,0.000070269365,0.000044749457,0.000004569335,0.000056029396,0.00007926197,3.9401957e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007190429,0.000030983407,0.0008610613,0.000066627086,0.0000318615,7.601708e-8,0.0007310706,0.000021546068,0.93902993,0.0007946325,0.00019236478,0.05816794],"study_design_scores_gemma":[0.0006041863,0.00014836142,0.11300313,0.00018413848,0.000023703109,0.0000016007423,0.00077922863,0.00012885183,0.81450254,0.0003232851,0.0701164,0.00018458393],"about_ca_topic_score_codex":0.0000046926725,"about_ca_topic_score_gemma":0.000012065391,"teacher_disagreement_score":0.12452741,"about_ca_system_score_codex":0.000012385781,"about_ca_system_score_gemma":0.000034733413,"threshold_uncertainty_score":0.3623882},"labels":[],"label_agreement":null},{"id":"W4412035340","doi":"10.1002/cpz1.70169","title":"An Aqueous‐Compatible On‐Column Approach for the Conjugation of Nucleic Acids Using Amino Modifiers","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nucleic acid; Oligonucleotide; Combinatorial chemistry; Chemistry; Carbodiimide; Solid-phase synthesis; Aqueous solution; Phosphoramidate; Amino acid; Nucleotide; Chromatography; DNA; Organic chemistry; Peptide; Stereochemistry; Biochemistry","score_opus":0.04667798730546579,"score_gpt":0.3682916277332121,"score_spread":0.3216136404277463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412035340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81044364,0.00028769014,0.118505955,0.000047171165,0.00019973688,0.06645503,0.00010341697,0.00003964733,0.003917698],"genre_scores_gemma":[0.9687396,0.0000061184264,0.0022137503,0.00006759506,0.00015493935,0.028521715,0.00011965227,0.000019146484,0.0001574293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914235,0.000033435885,0.00023276896,0.00030100913,0.00010841301,0.00018201712],"domain_scores_gemma":[0.9992774,0.00001697163,0.00012750363,0.00042891884,0.000107118714,0.000042057487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001725121,0.00014124018,0.00014975668,0.000027977481,0.00013058216,0.000033738757,0.0003404348,0.000110194334,0.000006075267],"category_scores_gemma":[0.000046479196,0.000113551825,0.000099655175,0.00009393822,0.000120307945,0.000005903834,0.000053545707,0.000089297464,5.333033e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032511615,0.00043893495,0.0011791354,0.00048126292,0.00006200001,8.7223754e-8,0.000045716486,0.0011537101,0.97463757,0.00068221166,0.0014349883,0.019559244],"study_design_scores_gemma":[0.001244461,0.00032094683,0.00033553678,0.000120790784,0.000042442138,0.0000013253136,0.00011718295,0.027063351,0.9433874,0.00019489117,0.02698692,0.00018476938],"about_ca_topic_score_codex":0.000002872057,"about_ca_topic_score_gemma":2.732439e-7,"teacher_disagreement_score":0.15829599,"about_ca_system_score_codex":0.00002184903,"about_ca_system_score_gemma":0.00009415378,"threshold_uncertainty_score":0.4630509},"labels":[],"label_agreement":null},{"id":"W4412627322","doi":"10.1002/cpz1.70181","title":"Nonenzymatic Primer Extension Experiments in the Presence of Coacervates","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Origins and Evolution of Life","field":"Physics and Astronomy","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"RNA; Primer (cosmetics); Nucleic acid; Primer extension; Coacervate; Cationic polymerization; DNA; Computational biology; Combinatorial chemistry; Chemistry; Biochemistry; Biology; Nanotechnology; Materials science; Organic chemistry","score_opus":0.058346484263553614,"score_gpt":0.40076080297747085,"score_spread":0.34241431871391725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412627322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.748623,0.000639586,0.010856565,0.0010127467,0.00079668436,0.21483159,0.000060500133,0.00005732141,0.023122009],"genre_scores_gemma":[0.9486974,6.92289e-7,0.00013957566,0.000019342555,0.000053738324,0.050922394,0.0000057574275,0.0000035399182,0.00015754899],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99930644,0.0000644527,0.00023960699,0.00012775727,0.00013588952,0.00012582396],"domain_scores_gemma":[0.99955183,0.00005084373,0.00008490334,0.00025546591,0.000041173556,0.000015778847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018778966,0.00008059762,0.00012691987,0.000043955657,0.000044192173,0.00002146991,0.00020734152,0.000012996706,0.00010463858],"category_scores_gemma":[0.000009511786,0.00005385825,0.000046561832,0.00018186368,0.000040906976,0.00008732061,0.000052942425,0.0000919355,0.000010882118],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009163186,0.0028736533,0.7495562,0.00054605916,0.000046871322,4.884955e-7,0.0016965957,0.00010011357,0.0067122756,0.16751724,0.03661682,0.034242067],"study_design_scores_gemma":[0.0052633407,0.00026226,0.2242431,0.0052652904,0.000043448625,3.5126627e-7,0.0022044005,0.004586637,0.11200773,0.025557363,0.61994517,0.0006208853],"about_ca_topic_score_codex":0.000032554486,"about_ca_topic_score_gemma":3.1919393e-7,"teacher_disagreement_score":0.58332837,"about_ca_system_score_codex":0.000009876925,"about_ca_system_score_gemma":0.000053922995,"threshold_uncertainty_score":0.21962757},"labels":[],"label_agreement":null},{"id":"W4413044573","doi":"10.1002/cpz1.70174","title":"Derivatization of Solid Supports Using a Carbamate‐Linked Tether Containing a Disulfide Functional Group","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Advanced biosensing and bioanalysis techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Oligonucleotide; Chemistry; Solid-phase synthesis; Nucleic acid; Combinatorial chemistry; Linker; Derivatization; Phosphoramidite; Protecting group; Amino acid; Bioconjugation; Reductive amination; Chromatography; Mass spectrometry; DNA; Organic chemistry; Biochemistry; Catalysis","score_opus":0.03375968616362356,"score_gpt":0.37303496604007647,"score_spread":0.3392752798764529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413044573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5927663,0.00023697023,0.38015473,0.000056878805,0.00019331939,0.026053911,0.000058632824,0.00011770997,0.0003616012],"genre_scores_gemma":[0.991889,0.000010624465,0.0036767689,0.00005438178,0.000074669864,0.004003329,0.00018523699,0.000013412467,0.00009255662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990587,0.000054655862,0.00033179205,0.0002799725,0.00011615491,0.00015871723],"domain_scores_gemma":[0.99934536,0.000011300448,0.00019392035,0.00024899922,0.00017011435,0.000030285148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017493381,0.00013407397,0.00019172583,0.00008122347,0.000070956856,0.000014735931,0.00008800987,0.00009989264,0.000003698282],"category_scores_gemma":[0.00011204693,0.00012289734,0.000101624486,0.0001853275,0.00008131823,0.000006366452,0.000085021675,0.0000733917,2.6898866e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014339389,0.000112776805,0.0058863545,0.00009968613,0.000052228846,4.887001e-7,0.000010948605,0.000041033898,0.9820624,0.00025383703,0.00019762956,0.01113923],"study_design_scores_gemma":[0.00062350614,0.0001890625,0.0021900677,0.0004640672,0.000049280006,0.000003680193,0.00003637439,0.00081325864,0.97665364,0.0007316032,0.018037297,0.000208186],"about_ca_topic_score_codex":0.0000039889537,"about_ca_topic_score_gemma":0.0000059403765,"teacher_disagreement_score":0.39912274,"about_ca_system_score_codex":0.000019659172,"about_ca_system_score_gemma":0.000094878684,"threshold_uncertainty_score":0.5011608},"labels":[],"label_agreement":null},{"id":"W4414952128","doi":"10.1002/cpz1.70217","title":"Integration of Primary Murine Osteocytes for In Vitro Mechanobiology Studies","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cellular Mechanics and Interactions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Sunnybrook Health Science Centre; Sunnybrook Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mechanobiology; Osteocyte; Mechanosensitive channels; Mechanotransduction; Microfluidics; Primary cell; Bone cell; Mechanosensation","score_opus":0.059261254052049926,"score_gpt":0.3981652236687565,"score_spread":0.3389039696167066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414952128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.482381,0.013851433,0.18019836,0.0012002133,0.003835741,0.31409222,0.0004417419,0.00007597128,0.0039233663],"genre_scores_gemma":[0.7691717,0.00039448508,0.002826322,0.00014379679,0.00019806971,0.2253674,0.0010085751,0.000021510767,0.00086810737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999384,0.000033928554,0.00024916988,0.00019324388,0.00003079628,0.0001088586],"domain_scores_gemma":[0.9995826,0.00002349444,0.000084157684,0.00016996307,0.00012802049,0.000011775323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016019617,0.000089175184,0.00017613119,0.000082904044,0.000024847785,0.000005267192,0.00009747628,0.0000598314,0.0000031139537],"category_scores_gemma":[0.0001604838,0.00007821266,0.000076666074,0.0000793194,0.00002371904,0.0000035435337,0.00008419631,0.000058608355,5.25389e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028382553,0.00012501086,0.000024304263,0.0002125039,0.000025777856,6.3791234e-8,0.000018022874,0.000001487146,0.9728192,0.0024985317,0.0005574754,0.023433803],"study_design_scores_gemma":[0.00064960733,0.00022046204,0.000034506636,0.0001526974,0.000007354106,4.5725156e-7,0.000046066074,0.00006891722,0.8930737,0.0011004572,0.104584634,0.00006117628],"about_ca_topic_score_codex":0.0000014705613,"about_ca_topic_score_gemma":0.000010111402,"teacher_disagreement_score":0.28679076,"about_ca_system_score_codex":0.000028385686,"about_ca_system_score_gemma":0.000064882166,"threshold_uncertainty_score":0.31894195},"labels":[],"label_agreement":null},{"id":"W4416354310","doi":"10.1002/cpz1.70254","title":"A Novel Image‐Based Approach for Analyzing Neutrophil Chemotaxis Using a Boyden Chamber Assay","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chemotaxis; Inflammation; Immune system; Cell migration; Wound healing; Cell; Process (computing); Innate immune system","score_opus":0.1179940658910337,"score_gpt":0.4408572646526856,"score_spread":0.3228631987616519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416354310","genre_codex":"methods","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0065791802,0.00011912537,0.79041755,0.00046741677,0.00006737333,0.20059128,0.000031728094,0.000120368684,0.0016059616],"genre_scores_gemma":[0.044561174,0.0000061226083,0.28609824,0.0004983408,0.0007191508,0.6653306,0.0003287622,0.00019210839,0.0022655036],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9977807,0.00007739185,0.0004541105,0.000646049,0.00046353825,0.0005782499],"domain_scores_gemma":[0.99842906,0.0001147542,0.00012826845,0.00066688657,0.00045017994,0.00021085226],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00071449316,0.00027747152,0.0004926431,0.00041911897,0.00016244593,0.00011131066,0.00020557399,0.000121343015,0.000074957185],"category_scores_gemma":[0.0004996706,0.0002456722,0.00031101433,0.00079312903,0.00010639388,0.00009235481,0.00017094506,0.00044207487,0.000011579651],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013801032,0.0026118136,0.0054884874,0.007693877,0.0001360107,0.00001367907,0.00007180749,0.00013238567,0.94927216,0.00023041059,0.0030271434,0.0299421],"study_design_scores_gemma":[0.028219717,0.00077133044,0.0061990027,0.0045862445,0.00041003822,0.000051195417,0.000067219524,0.5710168,0.277906,0.00013327456,0.10959703,0.0010421391],"about_ca_topic_score_codex":0.000009595802,"about_ca_topic_score_gemma":4.2614005e-7,"teacher_disagreement_score":0.67136616,"about_ca_system_score_codex":0.0002877902,"about_ca_system_score_gemma":0.0006137017,"threshold_uncertainty_score":0.9999996},"labels":[],"label_agreement":null},{"id":"W4416538945","doi":"10.1002/cpz1.70260","title":"Refined ChIP‐Seq Protocol for High‐Quality Chromatin Profiling in Solid Tissues Using the Complete Genomics/MGI Sequencing Platform","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Chromatin; ChIA-PET; Histone; Chromatin immunoprecipitation; ChIP-sequencing; Chromosome conformation capture; DNA sequencing; Protocol (science)","score_opus":0.12460372328057569,"score_gpt":0.42737464956064597,"score_spread":0.3027709262800703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416538945","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.31794512,0.000021050633,0.0128646195,0.00008063985,0.00011046037,0.6686883,0.000103471204,0.000027297587,0.00015902043],"genre_scores_gemma":[0.04914331,0.0000012824768,0.011433401,0.000089528505,0.00022071725,0.93884414,0.00016761011,0.00003834537,0.00006163797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979486,0.00009631933,0.0008196083,0.000530877,0.00013540896,0.00046920325],"domain_scores_gemma":[0.99876577,0.000039871502,0.0003720976,0.0006305571,0.00013893275,0.000052755753],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008135687,0.00030600507,0.0003614703,0.000076103934,0.0002686042,0.00012489139,0.0005172947,0.00016107687,0.000006958568],"category_scores_gemma":[0.00013784613,0.00024932972,0.00012652448,0.00016203034,0.00009610555,0.000011318975,0.00030011352,0.00021139662,0.0000019648044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003115604,0.0001431467,0.0013196064,0.0015755582,0.000047460104,6.2613793e-7,0.00011477221,0.0016948318,0.9853689,0.004219303,0.00014426051,0.0050599473],"study_design_scores_gemma":[0.008426208,0.0005331609,0.0024775197,0.00153407,0.000039046627,0.000008547417,0.0003249897,0.058422253,0.8582319,0.013017737,0.05588668,0.0010979103],"about_ca_topic_score_codex":0.000030147889,"about_ca_topic_score_gemma":0.000075037635,"teacher_disagreement_score":0.27015585,"about_ca_system_score_codex":0.00024759778,"about_ca_system_score_gemma":0.00047752835,"threshold_uncertainty_score":0.9999959},"labels":[],"label_agreement":null},{"id":"W4416827357","doi":"10.1002/cpz1.70228","title":"Evoking Cutaneous Reflexes During Human Walking I. A Step‐by‐Step Methodological Approach","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Muscle activation and electromyography studies","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Reflex; Gait; Treadmill; Gait cycle; Functional electrical stimulation; Stimulation","score_opus":0.07637406292371403,"score_gpt":0.37681541414813124,"score_spread":0.30044135122441723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416827357","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15304089,0.00431354,0.51480764,0.00021573795,0.0012582951,0.206319,0.000042252177,0.006877104,0.113125555],"genre_scores_gemma":[0.77320856,0.00007640061,0.014018835,0.000055045166,0.00027109022,0.21186344,0.000034443237,0.00007748008,0.00039470466],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99841607,0.00013762583,0.00039572426,0.00037251902,0.00020892793,0.00046911254],"domain_scores_gemma":[0.9994219,0.00010375549,0.00006673225,0.000298994,0.000047284986,0.00006132219],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00026946634,0.00028291682,0.00037647458,0.00021817928,0.00033066544,0.0001080228,0.00027561377,0.00010153479,0.000028702367],"category_scores_gemma":[0.00007441288,0.0002596567,0.0001374581,0.00050134567,0.000053781412,0.00012792711,0.00010145221,0.00043953504,0.0000018640296],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016494958,0.0006959038,0.008995085,0.007596317,0.0007227858,0.000013476806,0.0007470312,0.00074051117,0.2674326,0.0100013325,0.04482294,0.65806705],"study_design_scores_gemma":[0.0061004898,0.00047259568,0.037834056,0.0041364334,0.00020606526,0.00006879201,0.00082105654,0.009057475,0.13825448,0.0032778655,0.7964619,0.0033088364],"about_ca_topic_score_codex":0.0000026197106,"about_ca_topic_score_gemma":0.0000011780651,"teacher_disagreement_score":0.7516389,"about_ca_system_score_codex":0.00011980345,"about_ca_system_score_gemma":0.000011314785,"threshold_uncertainty_score":0.9999856},"labels":[],"label_agreement":null},{"id":"W4417041206","doi":"10.1002/cpz1.70236","title":"Setting up JBrowse 2 for Visualizing Genome Synteny","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Institutes of Health","keywords":"Synteny; Visualization; Genome; Genome browser; Disk formatting; Protocol (science); Data visualization","score_opus":0.03687052677644744,"score_gpt":0.38753192683410836,"score_spread":0.35066140005766094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417041206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5804881,0.017425137,0.07597239,0.0009764722,0.003228493,0.31495908,0.0004759827,0.000082400096,0.0063919486],"genre_scores_gemma":[0.62293655,0.00021376152,0.0035054458,0.00054331246,0.0011535917,0.36870578,0.00018323991,0.00007074551,0.0026875637],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990397,0.00002812493,0.00023848024,0.00035603996,0.000058121754,0.00027952067],"domain_scores_gemma":[0.9994627,0.000019294685,0.00007855006,0.00027633237,0.00012046145,0.000042650598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020733722,0.00015826861,0.000156741,0.000041654985,0.00016553423,0.000041903575,0.00020756871,0.00006802612,0.0000040371783],"category_scores_gemma":[0.00011870053,0.00015234992,0.000120882876,0.00006813754,0.00004121153,7.280795e-7,0.00019020398,0.000049106366,0.0000031171037],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012017658,0.000086817636,0.00359988,0.0005462465,0.000107374086,2.0519053e-7,0.00008086475,0.000025322226,0.959054,0.0013621151,0.005736482,0.029280528],"study_design_scores_gemma":[0.0008753194,0.00015510377,0.002144198,0.00013131092,0.000020477044,9.175285e-7,0.000052631312,0.00005093823,0.099532224,0.00056865654,0.89626014,0.00020810757],"about_ca_topic_score_codex":7.965155e-7,"about_ca_topic_score_gemma":0.000002409763,"teacher_disagreement_score":0.8905236,"about_ca_system_score_codex":0.00001530191,"about_ca_system_score_gemma":0.00009004437,"threshold_uncertainty_score":0.62126493},"labels":[],"label_agreement":null},{"id":"W7117448449","doi":"10.1002/cpz1.70290","title":"Preparation and Characterization of Alginate‐Based Bioinks for Three‐Dimensional Bioprinting of Cell‐Laden Constructs","year":2025,"lang":"en","type":"article","venue":"Current Protocols","topic":"3D Printing in Biomedical Research","field":"Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; Innovation Saskatchewan; University of Saskatchewan","keywords":"Characterization (materials science); Scaffold; Protocol (science); Biofabrication; 3D bioprinting","score_opus":0.03190854425467045,"score_gpt":0.36266158523373193,"score_spread":0.3307530409790615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117448449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.835616,0.00004702057,0.112426855,0.000055846416,0.00017994463,0.051323865,0.000053549855,0.00009119866,0.00020571986],"genre_scores_gemma":[0.97719234,0.0000013603641,0.0038818917,0.0000026759903,0.00002144508,0.018831184,0.0000460132,0.000011509009,0.000011580297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919325,0.000018698618,0.00032489287,0.00014738145,0.00017260977,0.00014315928],"domain_scores_gemma":[0.9994504,0.00011751531,0.000087671324,0.00014300014,0.00016495204,0.000036473448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029754222,0.00008854252,0.0001620501,0.00016231983,0.00002971025,0.00001666259,0.000103717255,0.000071488634,0.000013225164],"category_scores_gemma":[0.00012714493,0.00008605812,0.000033086082,0.00021480303,0.00011121487,0.0000588095,0.000053250158,0.000096760356,8.463955e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046951376,0.00005418321,0.0053115287,0.004246182,0.000012848995,6.285156e-8,0.000020535203,0.000091465416,0.93929356,0.00081119227,0.00003804675,0.050073445],"study_design_scores_gemma":[0.0007662168,0.00006396459,0.0135076875,0.0009104402,0.000007333786,1.4704521e-7,0.0000013715031,0.15296368,0.82951844,0.0003679329,0.0018149646,0.00007784565],"about_ca_topic_score_codex":9.994862e-7,"about_ca_topic_score_gemma":3.1362643e-7,"teacher_disagreement_score":0.15287222,"about_ca_system_score_codex":0.000020816391,"about_ca_system_score_gemma":0.00008036049,"threshold_uncertainty_score":0.35093483},"labels":[],"label_agreement":null}]}