{"meta":{"query_hash":"8810e3dac7c7","filters":{"venue":"Current Protocols in Protein Science"},"cohort_total":19,"direct_labels_cover":0,"predictions_cover":19,"exported":19,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/8810e3dac7c7","api":"https://metacan.xera.ac/api/v1/cohort?venue=Current+Protocols+in+Protein+Science"},"results":[{"id":"W1531138759","doi":"10.1002/0471140864.ps2909s76","title":"Expression and Purification of <i>Haemophilus influenzae</i> Rhomboid Intramembrane Protease GlpG for Structural Studies","year":2014,"lang":"en","type":"review","venue":"Current Protocols in Protein Science","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Rhomboid; Proteases; Protease; Haemophilus influenzae; Transmembrane protein; Cleave; Biochemistry; Affinity chromatography; Chemistry; Biology; Enzyme","score_opus":0.0801923665604016,"score_gpt":0.4158843666306239,"score_spread":0.33569200007022226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1531138759","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008444896,0.83102775,0.00084255514,0.0000073127685,0.00018551505,0.16701195,0.000050302388,0.000014777442,0.000015340687],"genre_scores_gemma":[0.00051461864,0.5193494,0.008652289,0.000010311022,0.00032590385,0.47100526,0.000042841173,0.000057025754,0.000042324355],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967199,0.00027845294,0.0010128656,0.0011032076,0.00042926526,0.00045631183],"domain_scores_gemma":[0.9975609,0.000057128098,0.0009867414,0.00083705847,0.0004262461,0.00013191832],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0019932422,0.0004891507,0.0011646659,0.00022003,0.00019301416,0.00008009194,0.0009494112,0.00029137867,0.0000027537094],"category_scores_gemma":[0.002211214,0.0003687491,0.00018452859,0.00036565805,0.0008103142,0.00003419441,0.00041930712,0.0002330206,0.0000026903404],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097429605,0.0000510717,0.0000044519543,0.03922364,0.000013855242,2.7246975e-7,0.00003656407,0.0000011684059,0.17378928,0.00036140424,0.000023513472,0.78639734],"study_design_scores_gemma":[0.0006415761,0.0006454157,0.0000017646696,0.03066771,0.000040988634,0.000008834046,0.000009278573,0.000015513719,0.3300883,0.001457774,0.63585407,0.00056877994],"about_ca_topic_score_codex":0.0000012734075,"about_ca_topic_score_gemma":5.753957e-7,"teacher_disagreement_score":0.7858286,"about_ca_system_score_codex":0.000054351196,"about_ca_system_score_gemma":0.00055043504,"threshold_uncertainty_score":0.99987644},"labels":[],"label_agreement":null},{"id":"W1561020948","doi":"10.1002/0471140864.ps2118s49","title":"Proteomic Identification of Cellular Protease Substrates Using Isobaric Tags for Relative and Absolute Quantification (iTRAQ)","year":2007,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of British Columbia","funders":"","keywords":"Protease; Isobaric labeling; Proteolysis; Proteome; Chemistry; Quantitative proteomics; Biochemistry; Proteomics; Context (archaeology); Biology; Enzyme; Gene","score_opus":0.06464494575142775,"score_gpt":0.3949076498885414,"score_spread":0.3302627041371136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1561020948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5186873,0.00005142428,0.41416246,0.0000236744,0.000013504716,0.06692461,0.000028786373,0.000047259895,0.00006098864],"genre_scores_gemma":[0.78922063,0.0000034324498,0.069797575,0.0000016910604,0.000032525644,0.14087807,0.000010845327,0.000020035795,0.000035224704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974985,0.00001768451,0.00096159504,0.0007343841,0.0003551376,0.00043268193],"domain_scores_gemma":[0.99809563,0.00004472628,0.0008292571,0.00055286376,0.0003717738,0.00010576717],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023478898,0.00021030287,0.0002254202,0.00024719836,0.0003045801,0.000092832284,0.0005325862,0.00011065652,0.000008628876],"category_scores_gemma":[0.00036091777,0.00021426607,0.000053712243,0.00086015713,0.0007085823,0.0007438588,0.00009936304,0.0002781722,0.0000015599571],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075956355,0.00016892383,0.00087836734,0.0006264345,0.000001839531,2.455493e-7,0.00017290356,0.000029420258,0.97705275,0.014932526,6.23701e-7,0.006060032],"study_design_scores_gemma":[0.00041975817,0.00003911928,0.0005958135,0.0005430839,0.000006671734,0.0000019182428,0.00004151165,0.007481956,0.9624802,0.027981523,0.00017689652,0.00023155866],"about_ca_topic_score_codex":0.000015653575,"about_ca_topic_score_gemma":0.0000022368347,"teacher_disagreement_score":0.34436488,"about_ca_system_score_codex":0.0002131775,"about_ca_system_score_gemma":0.00025449952,"threshold_uncertainty_score":0.87375164},"labels":[],"label_agreement":null},{"id":"W1564858503","doi":"10.1002/0471140864.ps1906s24","title":"High‐Throughput Screening for Protein‐Protein Interactions Using Yeast Two‐Hybrid Arrays","year":2001,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Yeast; Saccharomyces cerevisiae; Proteome; Computational biology; Two-hybrid screening; Genome; Protein–protein interaction; Protein Array Analysis; Biology; High-throughput screening; Cell biology; Genetics; Gene; Gene expression","score_opus":0.1029570140168863,"score_gpt":0.42743546785079073,"score_spread":0.32447845383390445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1564858503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75989616,0.000106851345,0.1565678,0.00012019354,0.00016362518,0.08285079,0.00004705226,0.000029682218,0.00021781243],"genre_scores_gemma":[0.8426289,0.0000026733624,0.03261002,0.000017532613,0.00045704233,0.12382885,0.000023519708,0.000037246456,0.00039419124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99674964,0.00011280107,0.0004972647,0.0010504206,0.00065269583,0.0009371715],"domain_scores_gemma":[0.9984329,0.000007746673,0.00018785849,0.00069958746,0.00043909863,0.00023284486],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012131737,0.0003049347,0.00024412168,0.00025722705,0.0004745599,0.0002487611,0.0009951357,0.000067583795,0.000040143565],"category_scores_gemma":[0.0005061242,0.00029107268,0.00011720184,0.0008085852,0.0005794686,0.000066832145,0.0005450723,0.0003620277,0.000017048744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027138536,0.0002174895,0.0004673199,0.00011236417,0.000005949751,0.000003742918,0.000025482763,0.000667534,0.97010136,0.00040386902,0.000024343195,0.027699148],"study_design_scores_gemma":[0.0013986375,0.0004046108,0.00015514546,0.0008022188,0.0000030826247,0.000023031753,0.00002537516,0.004302183,0.9693052,0.0012602675,0.02192522,0.0003950108],"about_ca_topic_score_codex":0.00007122972,"about_ca_topic_score_gemma":0.00003373117,"teacher_disagreement_score":0.12395778,"about_ca_system_score_codex":0.00010773188,"about_ca_system_score_gemma":0.0005513104,"threshold_uncertainty_score":0.99995416},"labels":[],"label_agreement":null},{"id":"W1588747168","doi":"10.1002/0471140864.ps1109s58","title":"Amino Acid Analysis","year":2009,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Amino Acid Enzymes and Metabolism","field":"Biochemistry, Genetics and Molecular Biology","cited_by":189,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Amino acid analysis; Amino acid; Hydrolysis; Performic acid; Chemistry; Acid hydrolysis; Peptide; Methionine; Cysteine; Lysine; Tryptophan; Peptide bond; Biochemistry; Organic chemistry; Enzyme","score_opus":0.022776055057217925,"score_gpt":0.3571346859753863,"score_spread":0.33435863091816836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1588747168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9142735,0.0014331564,0.01616491,0.00021203574,0.00020264357,0.06368601,0.000012396273,0.00004928276,0.003966073],"genre_scores_gemma":[0.9777032,0.000013238469,0.001981617,0.00008567218,0.00012727143,0.019877424,0.000009416478,0.0000055354467,0.00019659149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826545,0.000042071657,0.00027210393,0.00061583595,0.00036003007,0.00044453688],"domain_scores_gemma":[0.9990715,0.0000015646054,0.000101926715,0.0005934578,0.00010376268,0.00012782874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007305669,0.0001587311,0.00018995661,0.00024651602,0.00010886006,0.00007729416,0.0007080236,0.000064464846,0.000019616251],"category_scores_gemma":[0.00017453587,0.00013801982,0.000100910765,0.0015600364,0.00027283415,0.000020923537,0.00013793426,0.00013180527,0.000010951347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002905202,0.00015274511,0.003041968,0.000011534418,0.0000065809763,0.0000013037815,0.000036560465,0.000042237833,0.9087366,0.0015811777,0.00007351423,0.08628672],"study_design_scores_gemma":[0.0004912395,0.00024004519,0.043233495,0.00004750764,0.00001564949,0.0000018805449,0.000012601756,0.00018179991,0.89684737,0.00054803304,0.058103465,0.00027692303],"about_ca_topic_score_codex":0.0000028311279,"about_ca_topic_score_gemma":0.0000055921328,"teacher_disagreement_score":0.0860098,"about_ca_system_score_codex":0.000025485177,"about_ca_system_score_gemma":0.00018872254,"threshold_uncertainty_score":0.5628285},"labels":[],"label_agreement":null},{"id":"W1628759703","doi":"10.1002/0471140864.ps1922s67","title":"Capture and Qualitative Analysis of the Activated Fc Receptor Complex from Live Cells","year":2012,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"","keywords":"Chemistry; Chromatography; Bovine serum albumin; Trypsin; Insulin-like growth factor 2 receptor; Receptor; Ultracentrifuge; Electrospray ionization; Elution; Biochemistry; Mass spectrometry; Growth factor; Insulin-like growth factor 1 receptor","score_opus":0.13904656822471262,"score_gpt":0.4758594320965569,"score_spread":0.3368128638718443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1628759703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9629602,0.000181582,0.000034711138,0.00038435234,0.000054573396,0.035980605,0.00012431563,0.000008414101,0.0002712355],"genre_scores_gemma":[0.98382616,0.0000068551444,0.0012717788,0.000036932342,0.000049817754,0.014600785,0.000013317546,0.000005721657,0.00018860179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978641,0.00027023122,0.00031981728,0.00031625124,0.00083720154,0.00039235342],"domain_scores_gemma":[0.9989329,0.00016739916,0.00017174747,0.00032304585,0.00021331686,0.00019159613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012348568,0.00013800952,0.00035590402,0.00024664015,0.00013567788,0.00002710958,0.00036854346,0.00004699536,0.0003923024],"category_scores_gemma":[0.00032398076,0.00008050046,0.000090162546,0.0019099243,0.0012686505,0.0002223391,0.00029104922,0.00034872754,0.00001822192],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039372864,0.00043099353,0.05754173,0.00019316036,0.00007747149,4.548402e-7,0.016828706,0.0000028751501,0.9185045,0.0006590527,0.00012883056,0.0052385186],"study_design_scores_gemma":[0.001005152,0.00026355067,0.32932347,0.0010346659,0.00009726968,0.0000010640708,0.002989965,0.00083160476,0.6527813,0.00034998474,0.011059334,0.0002626373],"about_ca_topic_score_codex":0.00040324504,"about_ca_topic_score_gemma":0.000024504598,"teacher_disagreement_score":0.27178174,"about_ca_system_score_codex":0.000081673454,"about_ca_system_score_gemma":0.0001968872,"threshold_uncertainty_score":0.46743956},"labels":[],"label_agreement":null},{"id":"W1898065741","doi":"10.1002/0471140864.ps2908s75","title":"Membrane Transport Piece by Piece: Production of Transmembrane Peptides for Structural and Functional Studies","year":2014,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Institute for Nanotechnology; University of Alberta","funders":"","keywords":"Transmembrane protein; Membrane protein; Function (biology); Computational biology; Membrane; Membrane biophysics; Maltose-binding protein; Biology; Fusion protein; Cell biology; Chemistry; Biochemistry; Receptor; Recombinant DNA","score_opus":0.03760480540989998,"score_gpt":0.33497133056717876,"score_spread":0.2973665251572788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1898065741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93857867,0.00076467235,0.00934261,0.00014344986,0.00037786775,0.050700124,0.00002516721,0.000017972092,0.000049450544],"genre_scores_gemma":[0.9441661,0.000047839116,0.0032532776,0.000012142441,0.00015306902,0.05216667,0.000015685673,0.000014596569,0.00017062001],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826425,0.000067254325,0.00037981686,0.00064924284,0.00034086307,0.0002985768],"domain_scores_gemma":[0.9991611,0.000020521698,0.00015917417,0.0002851338,0.00030418264,0.00006984267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014607598,0.0001939924,0.0002513968,0.000081640566,0.00017066022,0.000020231697,0.00025491422,0.00007130079,0.0000052841506],"category_scores_gemma":[0.00057209306,0.00016193019,0.00005738636,0.00021327416,0.00065357174,0.00003889243,0.00003966953,0.000082262035,6.0099023e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029071176,0.00004973815,0.00034636862,0.0006963987,0.000007791979,4.480688e-8,0.000071457005,0.000024271954,0.97863126,0.00060605304,0.00005514306,0.01922076],"study_design_scores_gemma":[0.000724528,0.0005548167,0.00045378838,0.0003083523,0.0000068062777,0.0000035277972,0.00003130042,0.000080716614,0.9881879,0.0015435767,0.007903546,0.00020111326],"about_ca_topic_score_codex":0.0000026287496,"about_ca_topic_score_gemma":0.0000052496566,"teacher_disagreement_score":0.019019647,"about_ca_system_score_codex":0.00001713551,"about_ca_system_score_gemma":0.00011145898,"threshold_uncertainty_score":0.66033214},"labels":[],"label_agreement":null},{"id":"W1908451562","doi":"10.1002/0471140864.ps1710s61","title":"Application of Dynamic Light Scattering in Protein Crystallization","year":2010,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Enzyme Structure and Function","field":"Materials Science","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"","keywords":"Crystallization; Homogeneity (statistics); Dynamic light scattering; Macromolecule; Protein crystallization; Scattering; Diffraction; Light scattering; Crystallography; Chemistry; Chemical physics; Materials science; Biological system; Biophysics; Chemical engineering; Nanotechnology; Optics; Physics; Computer science; Biochemistry; Biology; Nanoparticle; Organic chemistry; Engineering","score_opus":0.012183244892665137,"score_gpt":0.3178992019308941,"score_spread":0.30571595703822896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1908451562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91533625,0.000012667477,0.019086812,0.00007632761,0.00024096017,0.064843476,0.000003960448,0.000054741162,0.00034477975],"genre_scores_gemma":[0.90683883,2.833282e-7,0.0046288385,0.00000437587,0.00003783126,0.08846302,0.0000023209839,0.000010371638,0.000014129234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99783474,0.000057595862,0.00056015846,0.0006050059,0.0005672772,0.00037524992],"domain_scores_gemma":[0.9989329,0.000010745915,0.00030252308,0.00052966236,0.00015737889,0.000066763016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016610199,0.00016044534,0.0001930229,0.00038605224,0.00010641492,0.00009994756,0.0007111641,0.00008259584,0.00006295542],"category_scores_gemma":[0.00026118406,0.00014482798,0.000025682495,0.0013984127,0.00041462565,0.0008540554,0.00015976049,0.00030406285,0.000019944875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027412896,0.00009237141,0.0017340819,0.00021165266,1.4704719e-7,3.5288113e-7,0.00015780488,0.000048113157,0.9771774,0.0034995175,9.619378e-7,0.017050194],"study_design_scores_gemma":[0.00041095846,0.0000709344,0.008173497,0.00045286448,8.1786476e-7,0.0000019982895,0.000016017646,0.0031063182,0.98164386,0.00506383,0.0008758042,0.0001830865],"about_ca_topic_score_codex":0.000034439003,"about_ca_topic_score_gemma":0.00020757601,"teacher_disagreement_score":0.023619553,"about_ca_system_score_codex":0.00011640306,"about_ca_system_score_gemma":0.00021627994,"threshold_uncertainty_score":0.5905914},"labels":[],"label_agreement":null},{"id":"W1909444051","doi":"10.1002/0471140864.ps2119s56","title":"The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse","year":2009,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"RNA regulation and disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Breast Cancer Research Alliance; Canada Research Chairs; Breast Cancer Alliance","keywords":"Complementary DNA; Proteases; Molecular biology; Oligonucleotide; RNA; Biology; DNA microarray; Messenger RNA; Reverse transcriptase; Protease; Gene; Gene expression; RNA extraction; Biochemistry; Enzyme","score_opus":0.030769024276756336,"score_gpt":0.34758075510083125,"score_spread":0.31681173082407493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1909444051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9554319,0.00032304972,0.0010344221,0.00017136802,0.000012881879,0.042985715,0.00001968615,0.000007391071,0.000013614047],"genre_scores_gemma":[0.9700601,0.000013051943,0.001101709,0.0000463307,0.00002366203,0.028702922,0.000017186416,0.000007305051,0.000027728207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983638,0.00008992379,0.00044626123,0.0005453901,0.0002161579,0.00033849123],"domain_scores_gemma":[0.9991911,0.000010900391,0.00017774687,0.00036469588,0.000110300236,0.00014523049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001023603,0.00016401177,0.00022283882,0.00025125983,0.0001817434,0.00008049694,0.00034007838,0.00007359922,0.0000012317081],"category_scores_gemma":[0.00026044567,0.00012775537,0.00006888058,0.00068115385,0.0007523107,0.000024082521,0.000047973575,0.0000997335,1.1940102e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020300789,0.00018770367,0.008950352,0.000061689134,0.000011597892,4.93693e-7,0.00007581786,0.000028588907,0.98511595,0.0001645776,0.0000078009,0.005192444],"study_design_scores_gemma":[0.0016393482,0.00042660467,0.0558185,0.00009856772,0.00002993853,0.0000012822381,0.000023269833,0.0005282502,0.939921,0.0006122083,0.00070296973,0.00019802639],"about_ca_topic_score_codex":0.000011098086,"about_ca_topic_score_gemma":0.000042142165,"teacher_disagreement_score":0.046868153,"about_ca_system_score_codex":0.000024423358,"about_ca_system_score_gemma":0.00015441922,"threshold_uncertainty_score":0.52097124},"labels":[],"label_agreement":null},{"id":"W2134339003","doi":"10.1002/0471140864.ps1411s54","title":"Analysis of Protein Lysine Acetylation In Vitro and In Vivo","year":2008,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Lysine; Acetylation; Biochemistry; Posttranslational modification; Phosphorylation; Chemistry; In vitro; In vivo; Residue (chemistry); Cell biology; Biology; Amino acid; Enzyme; Genetics","score_opus":0.0521107479946562,"score_gpt":0.37094202587455033,"score_spread":0.3188312778798941,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134339003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9623166,0.000038196184,0.00023468555,0.00019324881,0.0000039915085,0.036976896,0.0000068484187,0.000014439265,0.00021512507],"genre_scores_gemma":[0.96047455,0.0000038449148,0.0009914119,0.000020367708,0.000012630353,0.03842197,0.00000542632,0.000005371093,0.00006443688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977493,0.00009017199,0.0006815206,0.00051127636,0.0006532073,0.00031447216],"domain_scores_gemma":[0.99915314,0.000018543507,0.00020792875,0.00033087737,0.00017951614,0.0001099795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012673544,0.00014831776,0.00052032043,0.0024741131,0.00005829742,0.000019359586,0.00016702856,0.00005670225,0.000073382405],"category_scores_gemma":[0.00055667,0.00013172571,0.000083193896,0.00839478,0.00059319154,0.000376385,0.00008672712,0.0002495881,0.000001957314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002739929,0.0006200598,0.0936287,0.00020728966,0.000010459284,0.000021508242,0.00037206366,0.00012419609,0.89916366,0.00007742414,0.0000021799633,0.005498471],"study_design_scores_gemma":[0.002962816,0.00013601015,0.14893028,0.0029181791,0.000032991884,0.000006331239,0.00007677038,0.029334426,0.8150407,0.00016497735,0.00015934811,0.00023716419],"about_ca_topic_score_codex":0.00007360798,"about_ca_topic_score_gemma":0.00008871861,"teacher_disagreement_score":0.084122956,"about_ca_system_score_codex":0.00018489112,"about_ca_system_score_gemma":0.00029727403,"threshold_uncertainty_score":0.5371619},"labels":[],"label_agreement":null},{"id":"W2162856466","doi":"10.1002/0471140864.ps1925s79","title":"Measuring Protein‐Protein and Protein‐Nucleic Acid Interactions by Biolayer Interferometry","year":2015,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Chemistry; Nucleic acid; Affinities; Dissociation (chemistry); Analyte; Dissociation constant; Streptavidin; Molecule; Biophysics; Biochemistry; Chromatography; Receptor; Biotin; Organic chemistry; Biology","score_opus":0.18169988559348796,"score_gpt":0.42220018708207385,"score_spread":0.2405003014885859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162856466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8764053,0.00066083187,0.00047320788,0.0013201085,0.000108916305,0.11876844,0.0000242491,0.000119596865,0.0021193726],"genre_scores_gemma":[0.8464572,0.0000036906163,0.0028384903,0.000039807033,0.00016278963,0.14813653,0.000007746466,0.000040355397,0.00231341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99477476,0.00022390028,0.0008140214,0.0012071872,0.0018450881,0.0011350486],"domain_scores_gemma":[0.9974233,0.000026643871,0.00024757977,0.0007186138,0.0006267399,0.0009571445],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026649472,0.00047257065,0.0005792055,0.0008476105,0.0003677356,0.00035869656,0.00085950247,0.00012381311,0.00012363672],"category_scores_gemma":[0.0015626278,0.00037713483,0.000105861414,0.0020746656,0.0013421434,0.0011193021,0.00089383655,0.0013252224,0.00015659016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085307076,0.00070346205,0.0037499086,0.00085238816,0.000014336411,0.00002759835,0.00031286405,5.158426e-7,0.9502535,0.00078050804,0.00024184225,0.04220999],"study_design_scores_gemma":[0.0024839481,0.0014707779,0.0012862247,0.006713601,0.000007413473,0.000074268966,0.00018126243,0.00046972177,0.94010484,0.0016887657,0.044936605,0.0005825877],"about_ca_topic_score_codex":0.00013364195,"about_ca_topic_score_gemma":0.000019194242,"teacher_disagreement_score":0.044694763,"about_ca_system_score_codex":0.00050863856,"about_ca_system_score_gemma":0.0009901843,"threshold_uncertainty_score":0.99986804},"labels":[],"label_agreement":null},{"id":"W2547113222","doi":"10.1002/cpps.19","title":"Computational Prediction of Protein Secondary Structure from Sequence","year":2016,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"China Scholarship Council","keywords":"Sequence (biology); Computational biology; Protein secondary structure; Biology; Computer science; Chemistry; Biochemistry","score_opus":0.022004450588281127,"score_gpt":0.3159429864759208,"score_spread":0.29393853588763963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2547113222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9388783,0.00013821525,0.025248354,0.000071612536,0.00012623046,0.03460491,0.0007732166,0.000022169621,0.0001370108],"genre_scores_gemma":[0.9750059,0.0000020739362,0.01002758,0.000014179866,0.00011296625,0.014740824,0.000052092837,0.000012380365,0.000031982854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979849,0.00007380148,0.0004675106,0.000655686,0.00050080236,0.00031732663],"domain_scores_gemma":[0.9989243,0.000010712043,0.00026101645,0.00047407794,0.00023683487,0.0000930512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004094548,0.00018898875,0.00017450492,0.00011908392,0.00009086533,0.000033831882,0.0006669542,0.0001208946,0.00004958636],"category_scores_gemma":[0.00030747463,0.00013692984,0.000047742247,0.00037455253,0.0007999002,0.000052107964,0.00025240929,0.00016217407,0.0000026292337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008282433,0.000038688173,0.0037858216,0.000054964792,0.000003546602,7.668149e-7,0.000025461226,0.000065417706,0.9407989,0.0012177434,0.000010723301,0.053915147],"study_design_scores_gemma":[0.0012344435,0.00030989468,0.010529389,0.00070514076,0.0000021989802,0.0000046962887,0.0000072816865,0.00041335513,0.94302434,0.040447205,0.0030927267,0.00022932937],"about_ca_topic_score_codex":0.000012300024,"about_ca_topic_score_gemma":0.000011285825,"teacher_disagreement_score":0.053685818,"about_ca_system_score_codex":0.00006946182,"about_ca_system_score_gemma":0.00076839543,"threshold_uncertainty_score":0.5583837},"labels":[],"label_agreement":null},{"id":"W2596974594","doi":"10.1002/cpps.23","title":"Characterization of Protein Content Present in Exosomes Isolated from Conditioned Media and Urine","year":2017,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Extracellular vesicles in disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Microvesicles; Urine; Characterization (materials science); Chemistry; Chromatography; Biochemistry; Nanotechnology; Materials science","score_opus":0.04862267165683631,"score_gpt":0.3346006051574406,"score_spread":0.2859779335006043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2596974594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9625265,0.00015789302,0.00046822324,0.000098542325,0.00005080595,0.036606293,0.00005858514,0.0000063565835,0.00002681787],"genre_scores_gemma":[0.96234906,0.00001135763,0.0003325253,0.0000046627074,0.000056026056,0.03714917,0.000060222046,0.000009786424,0.00002717289],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984319,0.00008147893,0.00040192396,0.0005285771,0.00030346078,0.00025262352],"domain_scores_gemma":[0.9987078,0.0000067628725,0.00036548174,0.0006810048,0.00013439098,0.00010460763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005233891,0.00014717192,0.00018106673,0.000105304316,0.00011867809,0.00010376391,0.0006621086,0.000073247356,0.000014788049],"category_scores_gemma":[0.00069986575,0.00014020126,0.00002715763,0.00012687502,0.00084835384,0.00006737135,0.00043096836,0.00011845596,0.0000017135415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016065994,0.00023347535,0.018627789,0.000085352105,0.0000023309117,0.000003607865,0.00008145869,0.0000013196095,0.9751523,0.00018531008,7.742275e-7,0.0054655815],"study_design_scores_gemma":[0.0012462137,0.00011239074,0.15386803,0.00056535547,0.000001719478,6.0503385e-7,0.000011984121,0.0003391839,0.8426655,0.00080092787,0.00024206027,0.00014601706],"about_ca_topic_score_codex":0.000039168597,"about_ca_topic_score_gemma":0.00002916053,"teacher_disagreement_score":0.13524026,"about_ca_system_score_codex":0.000027723567,"about_ca_system_score_gemma":0.000182202,"threshold_uncertainty_score":0.5717241},"labels":[],"label_agreement":null},{"id":"W2724145149","doi":"10.1002/cpps.26","title":"Assays for Acetylation and Other Acylations of Lysine Residues","year":2017,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lysine; Succinylation; Acetylation; Moiety; Residue (chemistry); Histone; Biochemistry; Chemistry; Acylation; Bromodomain; Covalent bond; Posttranslational modification; Stereochemistry; Enzyme; Amino acid; Organic chemistry","score_opus":0.13149748254862545,"score_gpt":0.4732607050704399,"score_spread":0.34176322252181446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2724145149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8119298,0.00006067624,0.015258529,0.002691331,0.00003868043,0.1645869,0.000054349908,0.00005563291,0.0053240857],"genre_scores_gemma":[0.9553215,8.406067e-7,0.0044448515,0.000019148214,0.000046215424,0.040001623,0.0000022905815,0.0000053613194,0.00015816222],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904746,0.000017310373,0.00025355362,0.000248257,0.00028431596,0.00014907647],"domain_scores_gemma":[0.9990735,0.000019808049,0.00024343832,0.00039403548,0.00020279629,0.00006639416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095447473,0.00007283319,0.00016665964,0.00019748966,0.0002800204,0.000081069455,0.00016942807,0.000029015931,0.000026740341],"category_scores_gemma":[0.0011490108,0.00005935831,0.0000403379,0.00022089262,0.00058689894,0.00035621406,0.00006773186,0.00007466659,0.000001879679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024572152,0.0005676073,0.17696598,0.001033812,0.00001069363,0.0000011224365,0.00045321535,0.000012920654,0.7166712,0.020919051,0.00012409512,0.08299453],"study_design_scores_gemma":[0.0053008758,0.00046958207,0.23555398,0.0089632915,0.000031641997,0.000004757659,0.00008271422,0.009692595,0.71772945,0.012619648,0.009239173,0.00031231326],"about_ca_topic_score_codex":0.000011518649,"about_ca_topic_score_gemma":0.000016639366,"teacher_disagreement_score":0.1433917,"about_ca_system_score_codex":0.00003381426,"about_ca_system_score_gemma":0.00015466909,"threshold_uncertainty_score":0.24205616},"labels":[],"label_agreement":null},{"id":"W2783632698","doi":"10.1002/cpps.28","title":"Computational Prediction of Intrinsic Disorder in Proteins","year":2017,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Tokyo; China Scholarship Council; National Science Foundation","keywords":"Intrinsically disordered proteins; Computer science; Computational model; Field (mathematics); Artificial intelligence; Machine learning; Biology; Mathematics; Biophysics","score_opus":0.022202042071703825,"score_gpt":0.341153796437156,"score_spread":0.31895175436545214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783632698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93867266,0.000091055444,0.009744441,0.00007621263,0.00012175139,0.050744385,0.00003099311,0.000009455868,0.0005090724],"genre_scores_gemma":[0.96291405,0.0000036588901,0.0033539543,0.0000054565285,0.00006333682,0.03362031,0.000012623884,0.000007916801,0.000018701176],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984995,0.000041714662,0.00036252392,0.00045968033,0.0003597537,0.00027682897],"domain_scores_gemma":[0.99891734,0.0000038146088,0.00026685887,0.00061233965,0.00014540306,0.000054258668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071655243,0.00013352983,0.00015160475,0.00015371814,0.00017775013,0.00007522795,0.00083881465,0.00007978942,0.000004540403],"category_scores_gemma":[0.0005347108,0.00012429125,0.000035807825,0.00021992406,0.0007604437,0.000047514317,0.00038114234,0.00017205613,0.0000014528359],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031924673,0.00063002453,0.42029518,0.0004398345,0.000006170278,0.0000038179433,0.00017243787,0.0025364964,0.3880163,0.009029221,0.000016912067,0.17853434],"study_design_scores_gemma":[0.004275385,0.00088503014,0.71518564,0.001259534,0.0000032969328,0.000008956445,0.000035608857,0.007480527,0.23829944,0.02685661,0.0051887734,0.00052120857],"about_ca_topic_score_codex":0.000032713066,"about_ca_topic_score_gemma":0.00006392647,"teacher_disagreement_score":0.29489043,"about_ca_system_score_codex":0.000041798652,"about_ca_system_score_gemma":0.0004066422,"threshold_uncertainty_score":0.506845},"labels":[],"label_agreement":null},{"id":"W2912503804","doi":"10.1002/0471140864.ps0204s20","title":"Internet Basics","year":2000,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"The Internet; Computer science; Terminology; Function (biology); Data science; World Wide Web; Computational biology; Biology; Genetics","score_opus":0.05196764063329345,"score_gpt":0.3749343879760609,"score_spread":0.3229667473427674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912503804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87591136,0.0003395042,0.0035289938,0.0003976428,0.00033298813,0.09309194,0.00002464059,0.000050355564,0.026322572],"genre_scores_gemma":[0.944939,0.00009990009,0.0037613122,0.00014387099,0.00029644853,0.047338814,0.000024920126,0.000019832885,0.0033758911],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99797004,0.000046032026,0.00035273735,0.00043218408,0.00064417004,0.00055485347],"domain_scores_gemma":[0.99914587,0.00000530528,0.00005402387,0.00046258187,0.000119264834,0.00021296632],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011961672,0.0001439248,0.000118728356,0.000109567656,0.00007850101,0.00011960628,0.0010208462,0.00008500938,0.00024098835],"category_scores_gemma":[0.0003690713,0.0001194561,0.00004558497,0.0004677588,0.0009424013,0.000017843875,0.00027662155,0.0002098164,0.00015094178],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013352974,0.00033514763,0.0040769577,0.00019081033,0.0000032715068,0.000002599529,0.00016040963,0.000011222305,0.11388863,0.00039149658,0.0009952234,0.8798107],"study_design_scores_gemma":[0.0008751612,0.0006616105,0.00374123,0.0003045273,0.0000010762524,0.0000055916503,0.000025956246,0.0010719866,0.40486684,0.00075174944,0.58737457,0.00031968032],"about_ca_topic_score_codex":0.000006062084,"about_ca_topic_score_gemma":0.000009383034,"teacher_disagreement_score":0.87949103,"about_ca_system_score_codex":0.000039703784,"about_ca_system_score_gemma":0.00040664675,"threshold_uncertainty_score":0.4871278},"labels":[],"label_agreement":null},{"id":"W2916116668","doi":"10.1002/0471140864.ps1707s58","title":"Introduction to Atomic Force Microscopy (AFM) in Biology","year":2009,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Force Microscopy Techniques and Applications","field":"Physics and Astronomy","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Microscale chemistry; Atomic force microscopy; Nanotechnology; Nanoscopic scale; Resolution (logic); Nanometre; Biomolecule; Materials science; Microscopy; Biological materials; Biological system; Physics; Optics; Computer science; Biology","score_opus":0.017714922244099818,"score_gpt":0.4094119873141041,"score_spread":0.3916970650700043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916116668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7400038,0.000024366309,0.103577934,0.0025750312,0.00014612195,0.1519806,0.000022486676,0.00011554964,0.0015540672],"genre_scores_gemma":[0.8624052,4.0626617e-7,0.011529626,0.00004947294,0.0002514566,0.1256378,0.000007328312,0.000007939166,0.00011078647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984285,0.00002817347,0.00034587475,0.00061280857,0.000119572534,0.00046505503],"domain_scores_gemma":[0.99932045,0.0000055934734,0.00009352595,0.00043546662,0.000060727976,0.00008426619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006009821,0.00014943666,0.00016748301,0.00027852942,0.00012377005,0.00009103235,0.00061559805,0.00003096379,0.00006802974],"category_scores_gemma":[0.000019109606,0.00014288617,0.000032336247,0.001415233,0.0001951647,0.00025817027,0.00010361567,0.00022811777,0.00004781448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016712396,0.0001995131,0.004070539,0.000008515999,2.7624228e-7,6.340363e-8,0.00010198832,0.000019270794,0.8112403,0.10375761,0.0002656106,0.08031957],"study_design_scores_gemma":[0.00041734453,0.00019070412,0.0023742537,0.00023311152,7.553648e-7,4.0446045e-7,0.00001953583,0.00032248953,0.85538423,0.09092846,0.04985326,0.00027546944],"about_ca_topic_score_codex":0.000039830848,"about_ca_topic_score_gemma":0.0000027111746,"teacher_disagreement_score":0.12240134,"about_ca_system_score_codex":0.00015637804,"about_ca_system_score_gemma":0.00016283225,"threshold_uncertainty_score":0.5826729},"labels":[],"label_agreement":null},{"id":"W4248489619","doi":"10.1002/0471140864.ps2119s49","title":"The CLIP‐CHIP Oligonucleotide Microarray: Dedicated Array for Analysis of All Protease, Nonproteolytic Homolog, and Inhibitor Gene Transcripts in Human and Mouse","year":2007,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Breast Cancer Research Alliance; Canada Research Chairs; Breast Cancer Alliance","keywords":"DNA microarray; Gene; Oligonucleotide; Microarray; Biology; Molecular biology; Protease; Computational biology; Cell biology; Gene expression; Genetics; Enzyme; Biochemistry","score_opus":0.0404648789650945,"score_gpt":0.36714091890415085,"score_spread":0.32667603993905636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248489619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95588595,0.00036215468,0.005368228,0.00008826376,0.000027936429,0.038232103,0.00001190376,0.0000063767125,0.00001706755],"genre_scores_gemma":[0.956064,0.000024237695,0.0014828107,0.000023082595,0.00003098449,0.042319916,0.000012980394,0.000010136035,0.00003185762],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982164,0.0000771503,0.0005043601,0.0005959866,0.00023107232,0.00037506822],"domain_scores_gemma":[0.99912286,0.000016369197,0.00022563772,0.00039446395,0.00012651485,0.000114164024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021816206,0.00015557914,0.00020507065,0.000316597,0.00019066721,0.000059117723,0.00038728135,0.00009104008,0.0000010477402],"category_scores_gemma":[0.00022068457,0.000120238066,0.00005441408,0.0008430217,0.0008238377,0.00001863942,0.000075271615,0.00013634618,1.04801536e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018295474,0.00011837825,0.008116404,0.000082862425,0.000012280769,2.6032015e-7,0.00013355004,0.000007441067,0.9839035,0.000091270675,0.000009924256,0.0073411344],"study_design_scores_gemma":[0.0009650148,0.00023350908,0.019320192,0.000100213445,0.000016918599,9.824133e-7,0.00006296002,0.00010714255,0.9765315,0.00016925539,0.0023450204,0.00014731336],"about_ca_topic_score_codex":0.000018581244,"about_ca_topic_score_gemma":0.00013131538,"teacher_disagreement_score":0.011203788,"about_ca_system_score_codex":0.000036144967,"about_ca_system_score_gemma":0.00014580255,"threshold_uncertainty_score":0.4903166},"labels":[],"label_agreement":null},{"id":"W4248768694","doi":"10.1002/cpps.14","title":"Introduction to Atomic Force Microscopy (AFM) in Biology","year":2016,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Force Microscopy Techniques and Applications","field":"Physics and Astronomy","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Atomic force microscopy; Nanotechnology; Resolution (logic); Nanometre; Nanoscopic scale; Microscopy; Angstrom; Biological materials; Materials science; Chemistry; Biological system; Physics; Computer science; Optics; Crystallography; Biology","score_opus":0.01895032506745524,"score_gpt":0.40117133165727153,"score_spread":0.3822210065898163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248768694","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6717565,0.000013150374,0.20503005,0.002486033,0.0001709484,0.11969368,0.000040268424,0.00009030675,0.0007190775],"genre_scores_gemma":[0.7476478,5.4598746e-7,0.00710679,0.00001776089,0.000242947,0.24473022,0.0000026946236,0.000011456613,0.00023977779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984136,0.00003251876,0.00033633577,0.0006350887,0.00011589931,0.00046651156],"domain_scores_gemma":[0.99927783,0.000012208388,0.00009674299,0.00046231074,0.000066246124,0.00008467143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006468859,0.00014285784,0.000155233,0.00025846454,0.00010415964,0.000058983496,0.0006209229,0.000029662937,0.00014177403],"category_scores_gemma":[0.000030151246,0.000106061285,0.000030910647,0.0010416869,0.0003354999,0.00028830444,0.00020173786,0.00013297565,0.0001012345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000013712122,0.0000965423,0.011204218,0.000009058139,3.3618807e-7,3.6817184e-8,0.0000475623,0.0000017095383,0.83939236,0.07185256,0.00021597517,0.07716592],"study_design_scores_gemma":[0.00042238302,0.000079484016,0.0009682067,0.00032848446,5.018431e-7,2.5027953e-7,0.0000097257525,0.000040724266,0.88364697,0.045468725,0.06883546,0.00019908937],"about_ca_topic_score_codex":0.000046853347,"about_ca_topic_score_gemma":0.0000048591187,"teacher_disagreement_score":0.19792326,"about_ca_system_score_codex":0.00019284173,"about_ca_system_score_gemma":0.0001794236,"threshold_uncertainty_score":0.43250537},"labels":[],"label_agreement":null},{"id":"W4254536002","doi":"10.1002/0471140864.ps0903s52","title":"Affinity Purification of Natural Ligands","year":2008,"lang":"en","type":"article","venue":"Current Protocols in Protein Science","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute","funders":"","keywords":"Chemistry; Cyanuric chloride; Cyanogen bromide; Covalent bond; Agarose; Glyoxal; Amine gas treating; Chloride; Nucleic acid; Ligand (biochemistry); Combinatorial chemistry; Polymer chemistry; Organic chemistry; Chromatography; Biochemistry","score_opus":0.05586921261049506,"score_gpt":0.37980204354555214,"score_spread":0.3239328309350571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254536002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712499,0.00015078337,0.00039363725,0.000050709554,0.000058521557,0.027445445,0.0000034483564,0.000009360355,0.00063822855],"genre_scores_gemma":[0.9734265,0.000013076739,0.0009827083,0.0000061656133,0.00004370929,0.025330376,0.00000731847,0.000005721599,0.00018441827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985083,0.000042582782,0.00028031477,0.00038456245,0.0005079536,0.00027631858],"domain_scores_gemma":[0.9990837,0.0000049588634,0.00011388814,0.00043097752,0.00029027835,0.0000762006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00080585375,0.00009924749,0.000107807056,0.00016479853,0.0001380145,0.00002101713,0.0005610636,0.000052394083,0.000015147968],"category_scores_gemma":[0.00064803613,0.000088351066,0.000039867497,0.0007380617,0.00066871534,0.000022858203,0.00017229162,0.00017011355,0.0000099156305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008040173,0.00015884411,0.0062016435,0.00005334083,8.805279e-7,8.3306685e-7,0.00005317221,0.000010861305,0.98240966,0.00040312562,0.000044908986,0.010582321],"study_design_scores_gemma":[0.0004919922,0.00016746155,0.01726511,0.00007893118,2.9528582e-7,0.0000053066706,0.00000782136,0.00017776122,0.9741908,0.000121953344,0.0073859016,0.00010667034],"about_ca_topic_score_codex":0.0000075589564,"about_ca_topic_score_gemma":0.0000063052344,"teacher_disagreement_score":0.011063465,"about_ca_system_score_codex":0.000028793265,"about_ca_system_score_gemma":0.0005016307,"threshold_uncertainty_score":0.3602852},"labels":[],"label_agreement":null}]}