{"meta":{"query_hash":"49cbaa0a5fac","filters":{"venue":"Extremophiles"},"cohort_total":55,"direct_labels_cover":0,"predictions_cover":55,"exported":55,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/49cbaa0a5fac","api":"https://metacan.xera.ac/api/v1/cohort?venue=Extremophiles"},"results":[{"id":"W1840740921","doi":"10.1007/s00792-015-0776-8","title":"Tellurite-, tellurate-, and selenite-based anaerobic respiration by strain CM-3 isolated from gold mine tailings","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Geochemistry and Elemental Analysis","field":"Earth and Planetary Sciences","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; University of Manitoba","keywords":"Tellurate; Anaerobic exercise; Selenium; Anaerobic respiration; Chemistry; Tailings; Strain (injury); Food science; Microbiology; Biology","score_opus":0.01836959502152442,"score_gpt":0.2019104359164554,"score_spread":0.183540840894931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1840740921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99913776,0.0000686089,0.00013481587,0.000022218126,0.000008095303,0.0000050383424,0.00033865773,0.000004701817,0.00028010685],"genre_scores_gemma":[0.9967326,0.0001243092,0.00051341235,0.000026131429,0.000010874143,0.0000105556655,0.0014805,0.000010005413,0.0010916402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971193,0.000024258083,0.000028838578,0.000095404626,0.00006461688,0.000074948395],"domain_scores_gemma":[0.999856,0.000026565267,0.00002794526,0.00001299993,0.00003776489,0.000038751707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016586093,0.0006804509,0.00040449575,0.00037502527,0.0003485539,0.0005984426,0.0003873696,0.00039447728,0.00044150435],"category_scores_gemma":[0.0002889068,0.00025322998,0.00033275047,0.0004801171,0.00034052445,0.00031754965,0.0005042146,0.00043074347,0.00024225317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000379791,0.000045201665,0.014588453,0.000035944857,0.000020290221,0.00017900261,0.00031888855,0.00011128016,0.9826063,0.000040606865,0.000046702706,0.001627631],"study_design_scores_gemma":[0.000036298443,0.0010389112,0.3932385,0.000030010615,0.00013997921,0.0012998681,0.0026266298,0.0015023458,0.5979514,0.00016528931,0.0019311726,0.000039556402],"about_ca_topic_score_codex":0.0067582536,"about_ca_topic_score_gemma":0.005260887,"teacher_disagreement_score":0.0067582536,"about_ca_system_score_codex":0.00023463754,"about_ca_system_score_gemma":0.00042211518,"threshold_uncertainty_score":0.013437808},"labels":[],"label_agreement":null},{"id":"W1966667695","doi":"10.1007/s00792-005-0483-y","title":"Isolation and characterization of novel organic solvent-tolerant bacteria","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences","keywords":"Bacteria; Microorganism; Organic solvent; Solvent; Biology; Chemistry; Microbiology; Isolation (microbiology); Environmental chemistry; Organic chemistry","score_opus":0.00802089661703892,"score_gpt":0.2032022450074315,"score_spread":0.19518134839039258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966667695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929853,0.0007042675,0.00476018,0.00015648405,0.000023500594,0.0000505267,0.00062503124,0.000044279797,0.0006502948],"genre_scores_gemma":[0.97886765,0.001166361,0.013379449,0.00008802152,0.0000266041,0.000077450364,0.0029243783,0.00006354141,0.0034065607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998099,0.000024994122,0.000021763575,0.000036309193,0.00006684661,0.000040067916],"domain_scores_gemma":[0.99982005,0.000037317703,0.000042113443,0.000022862881,0.000035662495,0.000042110067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017298243,0.0005514564,0.00040339096,0.0003657992,0.0002253059,0.0005743218,0.00030634878,0.00035023552,0.00053535454],"category_scores_gemma":[0.00040542224,0.00022725518,0.00026838787,0.0003571475,0.00018101101,0.0003628219,0.00038108713,0.00048810808,0.00030946362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050195707,0.0000314549,0.00036205695,0.000019019863,0.0000036073382,0.000051261988,0.000016207212,0.000038833576,0.99746263,0.000030318184,0.000025660967,0.0019088226],"study_design_scores_gemma":[0.000016152908,0.00024644632,0.007131478,0.000007115488,0.000024657997,0.00041226478,0.000095261945,0.00046765734,0.9895895,0.000050393544,0.0019507282,0.00000828339],"about_ca_topic_score_codex":0.0006826957,"about_ca_topic_score_gemma":0.000952616,"teacher_disagreement_score":0.0006826957,"about_ca_system_score_codex":0.00016772837,"about_ca_system_score_gemma":0.00022447864,"threshold_uncertainty_score":0.0017910004},"labels":[],"label_agreement":null},{"id":"W1966960071","doi":"10.1007/s00792-009-0299-2","title":"Microbial sequences retrieved from environmental samples from seasonal Arctic snow and meltwater from Svalbard, Norway","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":102,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Meltwater; Acidobacteria; Alphaproteobacteria; Library; Snow; Betaproteobacteria; Arctic; Biology; Ecology; Bacterioplankton; Physical geography; Bacteroidetes; Environmental science; Geography; 16S ribosomal RNA; Actinobacteria; Phytoplankton; Bacteria","score_opus":0.01090225251314135,"score_gpt":0.20793959622658414,"score_spread":0.19703734371344278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966960071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950583,0.0005510991,0.00013162516,0.000012245185,0.000019383893,0.0000085194615,0.0036210632,0.000005932395,0.0005919355],"genre_scores_gemma":[0.9808796,0.0008323639,0.001620564,0.000041824995,0.000022034612,0.000027615359,0.0153749855,0.000015500213,0.0011855457],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99964786,0.000019921883,0.000042737178,0.00012535401,0.00007242994,0.00009160204],"domain_scores_gemma":[0.9998447,0.000025646606,0.00003464226,0.0000073684505,0.000051186023,0.000036424564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022184323,0.00040514584,0.00040923766,0.0014187808,0.00072938966,0.0010202277,0.0001955613,0.0003704664,0.0005804739],"category_scores_gemma":[0.0003850229,0.0001723637,0.00026016138,0.0012526738,0.00037592152,0.00024899218,0.00052526855,0.00018220514,0.0002803152],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017677263,0.00012840022,0.5934017,0.00036389602,0.00014945012,0.0010836243,0.0034259933,0.00095941697,0.37170246,0.000121903446,0.00078255875,0.026112927],"study_design_scores_gemma":[0.000014771922,0.00014073942,0.98319364,0.000058970763,0.00007031956,0.0003586597,0.0022356592,0.00036195113,0.009036258,0.000026958287,0.0044908463,0.000011197309],"about_ca_topic_score_codex":0.053504262,"about_ca_topic_score_gemma":0.08484103,"teacher_disagreement_score":0.053504262,"about_ca_system_score_codex":0.00040240007,"about_ca_system_score_gemma":0.00085852627,"threshold_uncertainty_score":0.10638565},"labels":[],"label_agreement":null},{"id":"W1972239202","doi":"10.1007/s00792-014-0715-0","title":"Detection and analysis of elusive members of a novel and diverse archaeal community within a thermal spring streamer consortium","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of General Medical Sciences; Joint Genome Institute; New Mexico Space Grant Consortium; Alabama Space Grant Consortium; National Institutes of Health; National Science Foundation","keywords":"Metagenomics; Archaea; Biology; Pyrosequencing; Primer (cosmetics); 16S ribosomal RNA; Phylotype; Hot spring; Microbial ecology; Ribosomal RNA; Genetics; Gene; Evolutionary biology; Bacteria; Paleontology","score_opus":0.018734044403742278,"score_gpt":0.23167081859241917,"score_spread":0.2129367741886769,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972239202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983701,0.00009796145,0.0009938964,0.000024236479,0.0000074546783,0.00001627778,0.00032232876,0.000010797686,0.00015692788],"genre_scores_gemma":[0.99355716,0.00020517556,0.004140932,0.00005498755,0.00002155063,0.000041324187,0.0009802316,0.00001454042,0.0009840751],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996265,0.000035288587,0.000021517995,0.00014950402,0.000096450116,0.00007074756],"domain_scores_gemma":[0.9996444,0.000049602302,0.000059972444,0.000031232747,0.00010145529,0.000113358496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004487594,0.00040279364,0.00033355784,0.00083719165,0.0007516938,0.0009605981,0.00024935635,0.00058018486,0.00036347745],"category_scores_gemma":[0.00048087534,0.0001786913,0.00022254979,0.00058075885,0.00040760226,0.00034022884,0.0006887633,0.00037853938,0.00019966325],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024621896,0.00005683682,0.025307354,0.000029064367,0.00001520273,0.000100644604,0.0004958755,0.00006863522,0.9703761,0.00005297931,0.00004098107,0.0032102414],"study_design_scores_gemma":[0.000047951944,0.0010169015,0.6799883,0.00004717171,0.00015337396,0.00187331,0.0040702,0.0042987317,0.3034619,0.00037790003,0.0046088235,0.000055308803],"about_ca_topic_score_codex":0.001311059,"about_ca_topic_score_gemma":0.0020817432,"teacher_disagreement_score":0.001311059,"about_ca_system_score_codex":0.00012947666,"about_ca_system_score_gemma":0.00033245274,"threshold_uncertainty_score":0.0026068687},"labels":[],"label_agreement":null},{"id":"W1982961154","doi":"10.1007/s00792-011-0426-8","title":"Prokaryotic diversity in sediments beneath two polar glaciers with contrasting organic carbon substrates","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Council for Higher Education; Natural Environment Research Council; Yükseköğretim Kurulu; Sight Research UK","keywords":"Glacier; Polar; Microbial ecology; Ecology; Total organic carbon; Carbon fibers; Diversity (politics); Earth science; Dissolved organic carbon; Geology; Environmental science; Physical geography; Environmental chemistry; Oceanography; Geography; Chemistry; Paleontology; Biology; Bacteria; Materials science; Physics","score_opus":0.019947560726809376,"score_gpt":0.23264459829729645,"score_spread":0.21269703757048708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982961154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99962485,0.000095233605,0.00002374507,0.000008046528,0.0000025094228,0.0000014691707,0.00007290493,0.0000013006875,0.00016991058],"genre_scores_gemma":[0.9994431,0.0001026094,0.000060866692,0.0000138278765,0.0000075290786,0.0000030588812,0.00020904449,0.0000017627215,0.00015819073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998215,0.000026085107,0.00001385754,0.000057017558,0.000026819667,0.000054774926],"domain_scores_gemma":[0.99973637,0.000056291337,0.00005528465,0.000009410188,0.000054409687,0.000088142304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001718458,0.0006608246,0.0005427625,0.0015623472,0.001119245,0.0016671346,0.0002741079,0.0007600087,0.00100638],"category_scores_gemma":[0.00038353138,0.0004277988,0.00019409634,0.0009812126,0.0011542701,0.0006070264,0.001125252,0.00036796945,0.00017433858],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004083238,0.00014062398,0.5008455,0.0002497063,0.0002786871,0.0009632817,0.002904511,0.00087798684,0.48298818,0.00027884103,0.00010150988,0.0062879818],"study_design_scores_gemma":[0.000027680304,0.00020907616,0.99134564,0.000012895329,0.00005610955,0.00016548688,0.0023910904,0.0003076317,0.0050900998,0.000087195316,0.00029503985,0.000012044795],"about_ca_topic_score_codex":0.006271944,"about_ca_topic_score_gemma":0.0076605044,"teacher_disagreement_score":0.006271944,"about_ca_system_score_codex":0.0004476428,"about_ca_system_score_gemma":0.00034443298,"threshold_uncertainty_score":0.012470901},"labels":[],"label_agreement":null},{"id":"W1987883355","doi":"10.1007/s00792-013-0539-3","title":"Characterization of culturable Paenibacillus spp. from the snow surface on the high Antarctic Plateau (DOME C) and their dissemination in the Concordia research station","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Space Agency; Polar Knowledge Canada","keywords":"Paenibacillus; Biology; Paenibacillus polymyxa; 16S ribosomal RNA; Microbiology; Microbial ecology; Prophage; Phylogenetic tree; Isolation (microbiology); Bacteria; Botany; Gene; Bacteriophage; Genetics; Escherichia coli","score_opus":0.028415689752605066,"score_gpt":0.26839803777630694,"score_spread":0.23998234802370189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987883355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998978,0.00007186418,0.000070555434,0.000009099558,0.0000027644362,0.000010903901,0.0004988358,0.0000015254411,0.00035651785],"genre_scores_gemma":[0.99512094,0.00026335593,0.00059521396,0.000035507237,0.00001307759,0.000027004808,0.0026085894,0.000005986615,0.0013303563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979526,0.000015496229,0.000018688492,0.000053984917,0.00005986343,0.000056767898],"domain_scores_gemma":[0.99975806,0.00002683457,0.000040217896,0.00001557147,0.000101014775,0.00005828489],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001860898,0.00037670773,0.0002891504,0.0009941027,0.00086834043,0.0007428826,0.0002910716,0.00031221044,0.0004032032],"category_scores_gemma":[0.00027805404,0.00019330179,0.0002778905,0.00095385016,0.00021488487,0.00025179054,0.0003653602,0.0002625345,0.00023427316],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036391287,0.00011175518,0.3712556,0.00006817737,0.00004831011,0.0002878328,0.001126948,0.00021255313,0.6198476,0.000047883572,0.00014124242,0.0064882007],"study_design_scores_gemma":[0.0000047085746,0.00020133994,0.9809645,0.000007534735,0.00001896924,0.00013923964,0.00085638085,0.00027099787,0.016839003,0.000009000405,0.0006839058,0.00000452077],"about_ca_topic_score_codex":0.038089484,"about_ca_topic_score_gemma":0.039993323,"teacher_disagreement_score":0.038089484,"about_ca_system_score_codex":0.00031447544,"about_ca_system_score_gemma":0.00053774053,"threshold_uncertainty_score":0.07573557},"labels":[],"label_agreement":null},{"id":"W1994155249","doi":"10.1007/s00792-013-0543-7","title":"An inter-order horizontal gene transfer event enables the catabolism of compatible solutes by Colwellia psychrerythraea 34H","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Compute Canada; University of Washington; National Science Foundation","keywords":"Sarcosine; Psychrophile; Betaine; Biology; Biochemistry; Thermus thermophilus; Osmoprotectant; Chemistry; Glycine; Gene; Proline; Escherichia coli; Amino acid","score_opus":0.007230005376687155,"score_gpt":0.21776145800762944,"score_spread":0.21053145263094228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994155249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976157,0.000138202,0.0009784499,0.000052885982,0.0000112297375,0.00002610564,0.00038070645,0.000044727185,0.00075213],"genre_scores_gemma":[0.99597967,0.000110238354,0.0020388411,0.00005161695,0.0000058557557,0.000033778986,0.0008988221,0.00001166656,0.00086956745],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987185,0.000010552992,0.0000083969535,0.00004144145,0.00002333751,0.00004440942],"domain_scores_gemma":[0.99983656,0.00003295155,0.000043193915,0.000033751443,0.000024647747,0.00002891113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009813917,0.0003481783,0.00023843462,0.00029753096,0.00019167659,0.00031350733,0.00023438442,0.00026002325,0.00064458436],"category_scores_gemma":[0.00023936735,0.00014845919,0.00026985374,0.00029181264,0.0001959611,0.00018804631,0.0004975923,0.00044434122,0.0002727903],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006879308,0.000018265977,0.0031446368,0.000030437819,0.0000054236316,0.00017583002,0.000059665952,0.000031533873,0.99379236,0.00006377835,0.000030646865,0.0025785833],"study_design_scores_gemma":[0.00005732757,0.0011313094,0.41126204,0.000025805355,0.000098538345,0.0019426718,0.0007381441,0.002263671,0.5755772,0.00024080067,0.006608767,0.000053733453],"about_ca_topic_score_codex":0.0024848992,"about_ca_topic_score_gemma":0.0019391506,"teacher_disagreement_score":0.0024848992,"about_ca_system_score_codex":0.0003142168,"about_ca_system_score_gemma":0.0002476861,"threshold_uncertainty_score":0.004940927},"labels":[],"label_agreement":null},{"id":"W2011943883","doi":"10.1007/s00792-008-0217-z","title":"Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; University of Georgia; National Science Foundation","keywords":"Hyperthermophile; Alcohol dehydrogenase; Thermococcus; Enzyme; Recombinant DNA; Pyrococcus furiosus; Biochemistry; Acetaldehyde; Thermostability; Escherichia coli; Protein subunit; Biology; Chemistry; Ethanol; Gene; Archaea","score_opus":0.016556693143798203,"score_gpt":0.21835423697950018,"score_spread":0.20179754383570198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011943883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966456,0.00062284933,0.0014934107,0.00012432465,0.000016400914,0.000012843489,0.000566941,0.000028786888,0.00048872555],"genre_scores_gemma":[0.9895678,0.00058001425,0.0022087768,0.00003546146,0.00001128765,0.000014659372,0.0040583145,0.000036661244,0.0034870554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999145,0.000012734822,0.000008127784,0.000017482584,0.000030152136,0.0000169311],"domain_scores_gemma":[0.99980253,0.000057880017,0.000037492908,0.00002607583,0.000042643747,0.000033290802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017354332,0.0003627583,0.00027240434,0.00025354626,0.00012589125,0.00035604957,0.00025798354,0.00023600076,0.00076358765],"category_scores_gemma":[0.00041337698,0.00016730222,0.00022213513,0.00025697827,0.00017338074,0.00020855434,0.00013873095,0.00042821091,0.00039623433],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008514724,0.000035255463,0.00042726597,0.00003852541,0.0000060162006,0.000064048814,0.00004229167,0.00007235973,0.9979571,0.000089966525,0.000032703105,0.0011492084],"study_design_scores_gemma":[0.000018299188,0.00012331773,0.014439396,0.000010666994,0.000024444764,0.000384769,0.00008481253,0.0010152613,0.9810338,0.00007610061,0.0027780992,0.000011144096],"about_ca_topic_score_codex":0.0017332053,"about_ca_topic_score_gemma":0.0011976702,"teacher_disagreement_score":0.0017332053,"about_ca_system_score_codex":0.00028325344,"about_ca_system_score_gemma":0.00020401164,"threshold_uncertainty_score":0.0034461617},"labels":[],"label_agreement":null},{"id":"W2014422859","doi":"10.1007/s00792-010-0319-2","title":"Cytoplasmic membrane fluidity and fatty acid composition of Acidithiobacillus ferrooxidans in response to pH stress","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; University of Guelph; Laurentian University","funders":"","keywords":"Membrane fluidity; Fatty acid; Biochemistry; Membrane; Membrane permeability; Biology; Polyunsaturated fatty acid; Bacterial outer membrane; Membrane lipids; Strain (injury); Chemistry","score_opus":0.011680049027662993,"score_gpt":0.22746709233203022,"score_spread":0.21578704330436724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014422859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99873024,0.00017385068,0.00030738796,0.00007735626,0.00001101809,0.0000049497025,0.00032871502,0.000012883847,0.00035351436],"genre_scores_gemma":[0.9983334,0.000101413294,0.0002889561,0.00002109777,0.000006865158,0.0000099939,0.0005049324,0.000007853741,0.0007254711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998884,0.000014610235,0.0000075744874,0.000027002503,0.000025993451,0.00003637263],"domain_scores_gemma":[0.99983716,0.000041094863,0.00003447024,0.000012863854,0.00004394668,0.000030429857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000147657,0.0003081503,0.0003753731,0.0002490558,0.00030365007,0.0003729531,0.00024159026,0.0003501963,0.00086072145],"category_scores_gemma":[0.00035770168,0.00022850538,0.00019301209,0.00028935613,0.00038056343,0.00045943397,0.00026300427,0.0004828854,0.00018013394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049890997,0.000016156151,0.0010396158,0.000014803438,0.000004209699,0.000052862753,0.00006381198,0.00005745513,0.9974923,0.000043227858,0.000025282296,0.0006913909],"study_design_scores_gemma":[0.00003184614,0.0004652908,0.082366236,0.000011363865,0.000024481727,0.00037111787,0.0006609279,0.0021687024,0.9124896,0.00018856062,0.0011934611,0.000028372122],"about_ca_topic_score_codex":0.0045011654,"about_ca_topic_score_gemma":0.0021624865,"teacher_disagreement_score":0.0045011654,"about_ca_system_score_codex":0.00040338907,"about_ca_system_score_gemma":0.0003131199,"threshold_uncertainty_score":0.008949935},"labels":[],"label_agreement":null},{"id":"W2015546264","doi":"10.1007/s007920070032","title":"Two different and highly organized mechanisms of translation initiation in the archaeon Sulfolobus solfataricus","year":2000,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Marine Biosciences","funders":"","keywords":"Sulfolobus solfataricus; Operon; Gene; Eukaryotic translation; Biology; Start codon; Genetics; Sulfolobus; Translation (biology); Archaea; Messenger RNA; Escherichia coli","score_opus":0.01576266287040605,"score_gpt":0.22455328856696496,"score_spread":0.20879062569655893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015546264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993317,0.0014356965,0.003801994,0.00014598429,0.000021688946,0.00002363904,0.00010118095,0.00015714463,0.0009957063],"genre_scores_gemma":[0.9941552,0.00032648732,0.0040568197,0.00007887924,0.000015301066,0.000040593797,0.00038509708,0.000029968034,0.00091155915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981576,0.00001894784,0.00001558363,0.00005930992,0.0000353863,0.00005494124],"domain_scores_gemma":[0.99969053,0.0000816825,0.00007758602,0.000041458996,0.00005222906,0.00005654249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019174314,0.00048379647,0.00037842643,0.00057886774,0.00054279127,0.00089772546,0.00029134977,0.0008082815,0.00040447453],"category_scores_gemma":[0.0004653237,0.00047227784,0.00042212883,0.0002656248,0.00062356837,0.00056547666,0.00047960025,0.00054992456,0.00027621584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005842696,0.000071912626,0.0043885545,0.0001400233,0.000028737177,0.00025813386,0.00040713407,0.00069288275,0.9846593,0.0019524654,0.00014287,0.0066736466],"study_design_scores_gemma":[0.00019462912,0.000858191,0.16588728,0.00012357302,0.00014657133,0.0010431741,0.0012679558,0.019048167,0.802631,0.0040895813,0.004546591,0.00016336686],"about_ca_topic_score_codex":0.0014024054,"about_ca_topic_score_gemma":0.0013170243,"teacher_disagreement_score":0.0014024054,"about_ca_system_score_codex":0.0005330363,"about_ca_system_score_gemma":0.00041110304,"threshold_uncertainty_score":0.0038673878},"labels":[],"label_agreement":null},{"id":"W2016499392","doi":"10.1007/s00792-011-0423-y","title":"Bacterial gene expression at low temperatures","year":2012,"lang":"en","type":"review","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Jeremy Coller Foundation; Tawani Foundation","keywords":"Bacteria; Gene expression; Psychrophile; Biology; Gene; Microbial ecology; Cytoplasm; Microbiology; Bacterial cell structure; Cell biology; Genetics","score_opus":0.019308023832765687,"score_gpt":0.25587017116957383,"score_spread":0.23656214733680814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016499392","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021115474,0.9886207,0.0040529165,0.00029175795,0.00041088785,0.00001203424,0.000095886564,0.000053949723,0.004350383],"genre_scores_gemma":[0.008432753,0.9840937,0.0024143336,0.00023980743,0.00020735501,0.0000320696,0.00019133269,0.000024716914,0.004363887],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999808,0.000017744458,0.00001677722,0.000050730938,0.000078809564,0.000027904025],"domain_scores_gemma":[0.9998932,0.00003856626,0.000022385071,0.000009575388,0.000026054082,0.000010096297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036536303,0.0012792057,0.0011721032,0.0007985438,0.00018880106,0.0010046838,0.00079262746,0.0008510387,0.0012038483],"category_scores_gemma":[0.00033616574,0.0004215741,0.00038425342,0.0016876045,0.00067081064,0.00083982595,0.0006553852,0.0014117938,0.0019835173],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015940881,0.00006138447,0.00020820869,0.007825087,0.000038909762,0.00017172705,0.000056978766,0.00075139175,0.15521657,0.0076514194,0.009755433,0.8181035],"study_design_scores_gemma":[0.000020466769,0.00012331664,0.0012798168,0.0010050657,0.000085404354,0.00076502585,0.000049662704,0.00040350473,0.091867805,0.0032758745,0.90108526,0.000038878305],"about_ca_topic_score_codex":0.0005330904,"about_ca_topic_score_gemma":0.0007631163,"teacher_disagreement_score":0.0012792057,"about_ca_system_score_codex":0.00078525086,"about_ca_system_score_gemma":0.0005116896,"threshold_uncertainty_score":0.0056973696},"labels":[],"label_agreement":null},{"id":"W2017297739","doi":"10.1007/s00792-009-0237-3","title":"Biogenic methane production in formation waters from a large gas field in the North Sea","year":2009,"lang":"en","type":"article","venue":"Extremophiles","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":90,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Methanogenesis; Archaea; Salinity; Produced water; Methane; Environmental chemistry; Biodegradation; Nutrient; Seawater; Biology; Petroleum; Microbial ecology; Bacteria; Chemistry; Ecology; Environmental science; Environmental engineering","score_opus":0.011914869907800725,"score_gpt":0.21542257728311492,"score_spread":0.2035077073753142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017297739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997693,0.000028513312,0.00001600439,0.0000079520505,0.0000010955617,8.122586e-7,0.000037555255,0.0000010118414,0.00013792406],"genre_scores_gemma":[0.99968326,0.000037239362,0.000046475925,0.0000043311875,0.0000030981125,0.000001584838,0.00010736659,0.0000011300345,0.000115522846],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9999515,0.0000058140286,0.0000025436675,0.000015794662,0.000009183401,0.000015236221],"domain_scores_gemma":[0.99992,0.000013307125,0.000014610725,0.0000043111445,0.000012631054,0.000035090576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011450281,0.0003543725,0.0003503287,0.0005856577,0.00080660806,0.00047890426,0.0002616367,0.00035132957,0.00045960286],"category_scores_gemma":[0.00014255644,0.00026277365,0.00021044539,0.00044693952,0.0005411142,0.00035336785,0.00056716485,0.0002371276,0.00009095076],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020076355,0.00010905773,0.70759386,0.00008380267,0.00015854917,0.0017324282,0.0012871728,0.0020186526,0.2782527,0.00022862937,0.00021591474,0.006311497],"study_design_scores_gemma":[0.000019561554,0.0001391868,0.992986,0.0000037785344,0.000028012002,0.00015771404,0.0007388973,0.0014981718,0.0040557254,0.000044034994,0.0003212859,0.000007634947],"about_ca_topic_score_codex":0.023671348,"about_ca_topic_score_gemma":0.02989855,"teacher_disagreement_score":0.023671348,"about_ca_system_score_codex":0.00065126485,"about_ca_system_score_gemma":0.0003883677,"threshold_uncertainty_score":0.047067165},"labels":[],"label_agreement":null},{"id":"W2018479385","doi":"10.1007/s00792-008-0150-1","title":"A novel metabolic network leads to enhanced citrate biogenesis in Pseudomonas fluorescens exposed to aluminum toxicity","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"","keywords":"Aconitase; Citrate synthase; Pseudomonas fluorescens; Malate dehydrogenase; Biochemistry; Isocitrate dehydrogenase; Phosphoenolpyruvate carboxykinase; Fumarase; Biology; NAD+ kinase; Citric acid cycle; ATP citrate lyase; Dehydrogenase; Metabolite; Malic enzyme; Glyoxylate cycle; Enzyme; Bacteria","score_opus":0.04145036157456975,"score_gpt":0.23001320147072968,"score_spread":0.18856283989615993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018479385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99661356,0.00012223297,0.0021687564,0.00022267192,0.000022837117,0.000020957537,0.00019676195,0.00008838038,0.0005438341],"genre_scores_gemma":[0.9981901,0.000056820172,0.0008095994,0.000041092055,0.0000047456992,0.000016712938,0.00021754825,0.000013234736,0.0006500349],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998746,0.000016581283,0.0000079347365,0.000028352637,0.000039515548,0.000032905515],"domain_scores_gemma":[0.99987817,0.000019734633,0.000029892733,0.000016458847,0.00001700745,0.000038717175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013549856,0.00040295476,0.00033873893,0.00016176591,0.0002885404,0.00038510075,0.00029921386,0.00043516717,0.00071368855],"category_scores_gemma":[0.00019748852,0.0001643109,0.00021720491,0.00017247187,0.00026974262,0.00025468352,0.00030556793,0.00043841236,0.0002064404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009757844,0.000015847541,0.00014017646,0.000008825626,0.0000017263701,0.00007761609,0.0000063104535,0.000045000797,0.9991972,0.000058818183,0.000023389252,0.00032769563],"study_design_scores_gemma":[0.000036029236,0.0002687339,0.009552759,0.0000037979246,0.000014487188,0.00037645973,0.00009962461,0.0033436164,0.9853855,0.00018918612,0.0007189394,0.000010986703],"about_ca_topic_score_codex":0.001959811,"about_ca_topic_score_gemma":0.0020137595,"teacher_disagreement_score":0.001959811,"about_ca_system_score_codex":0.00056299666,"about_ca_system_score_gemma":0.000317153,"threshold_uncertainty_score":0.0040848255},"labels":[],"label_agreement":null},{"id":"W2018768541","doi":"10.1007/s00792-003-0353-4","title":"Optimum growth temperature and the base composition of open reading frames in prokaryotes","year":2003,"lang":"en","type":"article","venue":"Extremophiles","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"RNA; Biology; Nucleic acid; Purine; Ribosomal RNA; Transfer RNA; DNA; Base pair; Purine metabolism; Biochemistry; Genetics; Enzyme; Gene","score_opus":0.01071902955858922,"score_gpt":0.23828880870096364,"score_spread":0.22756977914237442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018768541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99007964,0.0057411403,0.002589517,0.00009359609,0.000021607233,0.000010086192,0.0004088651,0.000057399957,0.0009981422],"genre_scores_gemma":[0.9970271,0.0010478944,0.0011782293,0.000019867419,0.000019558658,0.000009486856,0.00039762794,0.000027566008,0.0002727099],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99978954,0.000050877097,0.00002378656,0.00004263217,0.00004860577,0.00004451541],"domain_scores_gemma":[0.9992291,0.0003343496,0.00014802063,0.000028272061,0.00012266965,0.0001375441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031769928,0.00042644926,0.00046364675,0.0006566475,0.00026538814,0.0008003177,0.0003541827,0.00042368862,0.00056007033],"category_scores_gemma":[0.00096965773,0.0003597689,0.00017510861,0.00033083296,0.00031714485,0.00057776866,0.00024290191,0.0005320289,0.00037217743],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012665302,0.00003955262,0.0024910541,0.000079260535,0.000014514146,0.00011655467,0.000069174544,0.00063509675,0.99049145,0.00041172229,0.00008613625,0.0042990563],"study_design_scores_gemma":[0.000026055806,0.00040426687,0.03126217,0.00004304681,0.000052773354,0.0004659929,0.0002187282,0.002759366,0.9620028,0.0013779959,0.0013444684,0.00004241764],"about_ca_topic_score_codex":0.00059565937,"about_ca_topic_score_gemma":0.00061360345,"teacher_disagreement_score":0.0008003177,"about_ca_system_score_codex":0.0003802483,"about_ca_system_score_gemma":0.00018422444,"threshold_uncertainty_score":0.0027589202},"labels":[],"label_agreement":null},{"id":"W2019031059","doi":"10.1007/s00792-012-0468-6","title":"Desulfohalophilus alkaliarsenatis gen. nov., sp. nov., an extremely halophilic sulfate- and arsenate-respiring bacterium from Searles Lake, California","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Mine drainage and remediation techniques","field":"Environmental Science","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"U.S. Geological Survey; National Aeronautics and Space Administration","keywords":"Arsenate; Biology; Extreme environment; Sulfate; Halophile; Strain (injury); Bacteria; Botany; Chemistry; Arsenic","score_opus":0.019804189239516143,"score_gpt":0.23574417892721142,"score_spread":0.2159399896876953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019031059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942062,0.0016016195,0.00068267854,0.000100397214,0.000044595115,0.000060619634,0.0015389043,0.000033445016,0.0017315588],"genre_scores_gemma":[0.9827399,0.002742394,0.0037409838,0.000117231306,0.00005280749,0.00006098072,0.008103639,0.000010150744,0.0024318506],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997596,0.000009173534,0.00004912058,0.00008084008,0.000075623284,0.000025548443],"domain_scores_gemma":[0.9998617,0.0000127110725,0.00003823593,0.000011728843,0.000048068403,0.000027528911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012824069,0.000643527,0.00029528068,0.0005488887,0.00044452673,0.00045276448,0.00023965945,0.00028652253,0.00037580295],"category_scores_gemma":[0.0001815086,0.00018155688,0.00018365827,0.0006017278,0.000110553185,0.00030447333,0.00032530958,0.00026233835,0.00027776574],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031218358,0.00014627293,0.09554205,0.0006693501,0.000056003868,0.00094994897,0.0008279374,0.00065618684,0.84889936,0.00010666963,0.00066708814,0.051166937],"study_design_scores_gemma":[0.00009206278,0.0015108169,0.8416377,0.00019351894,0.00027173338,0.0056181536,0.0015576326,0.0016729174,0.118724525,0.00015792115,0.02851729,0.000045672714],"about_ca_topic_score_codex":0.012378759,"about_ca_topic_score_gemma":0.019994905,"teacher_disagreement_score":0.012378759,"about_ca_system_score_codex":0.00023397425,"about_ca_system_score_gemma":0.0006295032,"threshold_uncertainty_score":0.02461338},"labels":[],"label_agreement":null},{"id":"W2021950406","doi":"10.1007/s00792-011-0416-x","title":"Effects of different ion compositions on growth of obligately halophilic protozoan Halocafeteria seosinensis","year":2011,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Universidad Nacional del Sur; Seoul National University; Dalhousie University; Kyungpook National University","keywords":"Halophile; Salinity; Halotolerance; Extremophile; Biology; Extreme environment; Sulfate; Obligate; Environmental chemistry; Ecology; Chemistry; Bacteria; Microorganism","score_opus":0.01683187925221492,"score_gpt":0.20329102856270004,"score_spread":0.18645914931048513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021950406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99767107,0.00060006836,0.00014658338,0.00020046104,0.00006625019,0.000010435214,0.00038285248,0.00002333543,0.00089893024],"genre_scores_gemma":[0.9977168,0.0002945603,0.00036668972,0.00014815632,0.000024467776,0.000013189158,0.00036406246,0.000014495144,0.0010575519],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99958557,0.00010129106,0.00004698188,0.00008714639,0.00005692126,0.000122049554],"domain_scores_gemma":[0.9990369,0.0003617569,0.00012205367,0.000057274952,0.00014144841,0.00028056672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002458875,0.0006623429,0.0005371092,0.00035079726,0.00043246572,0.0009365794,0.0005610713,0.0009648752,0.0017835016],"category_scores_gemma":[0.0009904777,0.00044024814,0.00027025954,0.00031293966,0.000618788,0.0006957866,0.0007863055,0.00073817704,0.0003185193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01219743,0.000294731,0.002621763,0.00018505106,0.000062382554,0.00024266669,0.00023413134,0.0002578342,0.9799351,0.000110305096,0.00021711177,0.0036414904],"study_design_scores_gemma":[0.0003426376,0.0034599528,0.029566618,0.000036532816,0.00015853187,0.0002481456,0.0007412005,0.0014061913,0.96105325,0.00028669316,0.002630961,0.00006924206],"about_ca_topic_score_codex":0.003165085,"about_ca_topic_score_gemma":0.003361337,"teacher_disagreement_score":0.003165085,"about_ca_system_score_codex":0.0005290756,"about_ca_system_score_gemma":0.0005978725,"threshold_uncertainty_score":0.0062933564},"labels":[],"label_agreement":null},{"id":"W2043944658","doi":"10.1007/s00792-005-0498-4","title":"Bioremediation of hydrocarbon-contaminated polar soils","year":2006,"lang":"en","type":"review","venue":"Extremophiles","topic":"Methane Hydrates and Related Phenomena","field":"Environmental Science","cited_by":341,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Bioremediation; Environmental remediation; Environmental chemistry; Soil water; Environmental science; Biodegradation; Microbial biodegradation; Soil contamination; Chemistry; Contamination; Microorganism; Soil science; Ecology; Geology; Biology; Bacteria","score_opus":0.02133270258260223,"score_gpt":0.2573669877919863,"score_spread":0.23603428520938408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043944658","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00088344014,0.9975419,0.00039722232,0.00008297941,0.00013234539,0.0000058939295,0.000021179703,0.00000865316,0.00092624174],"genre_scores_gemma":[0.0027935319,0.9953596,0.00038458145,0.00007209744,0.00009517834,0.0000064835485,0.00004762456,0.0000014628016,0.0012393391],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998667,0.000015341524,0.000014487987,0.000030129626,0.000055203287,0.000018112109],"domain_scores_gemma":[0.9998733,0.00003606577,0.000031024792,0.000006783126,0.000038371385,0.000014461122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043262343,0.0012021551,0.0018490701,0.0016387859,0.00022582937,0.00077755825,0.00088033313,0.00087875506,0.0011964143],"category_scores_gemma":[0.0003017385,0.00031089698,0.00039786173,0.0019983163,0.00032918,0.000801062,0.000513354,0.00067522126,0.0012526213],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011108506,0.000087187334,0.00019309002,0.01183095,0.00010516851,0.00027419845,0.00004959567,0.00063313195,0.02000939,0.0011012682,0.0079378355,0.9576672],"study_design_scores_gemma":[0.0000517361,0.00034982318,0.0023314063,0.0017949489,0.00025683787,0.0017812073,0.00012071155,0.0004276469,0.021903668,0.001640429,0.9693012,0.000040309646],"about_ca_topic_score_codex":0.00097126333,"about_ca_topic_score_gemma":0.0020546713,"teacher_disagreement_score":0.0018490701,"about_ca_system_score_codex":0.00041021474,"about_ca_system_score_gemma":0.0004773733,"threshold_uncertainty_score":0.0040023923},"labels":[],"label_agreement":null},{"id":"W2045320669","doi":"10.1007/s00792-008-0156-8","title":"Novel halophilic aerobic anoxygenic phototrophs from a Canadian hypersaline spring system","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Anoxygenic photosynthesis; Phototroph; Halophile; Biology; Halotolerance; Microbial mat; Botany; Halobacterium; Ecology; Salinity; Bacteria; Photosynthesis","score_opus":0.017466881833232653,"score_gpt":0.1846465727159236,"score_spread":0.16717969088269097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045320669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974878,0.00020483871,0.00021094088,0.000050364804,0.000011740051,0.000043458353,0.0008617931,0.000007840117,0.0011212305],"genre_scores_gemma":[0.9934429,0.00035605417,0.0010559164,0.00007010638,0.0000137,0.000025554336,0.0016297712,0.000010374691,0.0033954976],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997687,0.000005893199,0.000010937828,0.000053709056,0.000073504474,0.00008723463],"domain_scores_gemma":[0.99973947,0.000010538601,0.000025983383,0.000010556728,0.00011900242,0.00009438695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014517295,0.0005414586,0.0004221176,0.0009684132,0.0025542658,0.0009606887,0.00042668165,0.00034093976,0.0006856227],"category_scores_gemma":[0.0002571562,0.00022158936,0.00020174685,0.0011055741,0.0004449136,0.00022481942,0.00069967186,0.00038080045,0.00018970459],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006576039,0.000090926405,0.097520106,0.00011653246,0.000037559406,0.00091941963,0.003403696,0.00013348491,0.8841008,0.00013869118,0.0003451312,0.012536069],"study_design_scores_gemma":[0.000018683044,0.00019831283,0.95835215,0.000021082255,0.00007235841,0.00086613744,0.0041301507,0.00029720497,0.02958706,0.00007298354,0.0063528623,0.000030912637],"about_ca_topic_score_codex":0.38439348,"about_ca_topic_score_gemma":0.6380636,"teacher_disagreement_score":0.61560655,"about_ca_system_score_codex":0.0017036678,"about_ca_system_score_gemma":0.0024773004,"threshold_uncertainty_score":0.76431215},"labels":[],"label_agreement":null},{"id":"W2047398033","doi":"10.1007/s00792-015-0743-4","title":"Characterizing the surface-exposed proteome of Planococcus halocryophilus during cryophilic growth","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Winnipeg; Health Canada; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Space Agency","keywords":"Proteome; Peptidoglycan; Biochemistry; In silico; Biology; Metabolism; Amino acid; Cell wall; Chemistry; Gene","score_opus":0.026891542129936566,"score_gpt":0.21841132936534105,"score_spread":0.19151978723540447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047398033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99834025,0.0001720454,0.00034992618,0.000042981126,0.000007032239,0.0000055052055,0.0007008361,0.0000067757564,0.0003746593],"genre_scores_gemma":[0.99622077,0.0002659072,0.0006045268,0.000042772564,0.0000101562655,0.0000151458435,0.0020050406,0.00001405638,0.0008215561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999943,0.000005336719,0.0000019945096,0.000011987229,0.000019208093,0.000018415481],"domain_scores_gemma":[0.99992263,0.00001413428,0.000017484026,0.0000055822643,0.000019692492,0.00002050709],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011538646,0.00029304018,0.00021121248,0.00020629616,0.0001920791,0.00041002606,0.00016019563,0.00020481132,0.00046148905],"category_scores_gemma":[0.00019506406,0.00013844708,0.00016810336,0.0002931198,0.00021753302,0.00033384355,0.00031754817,0.0003827988,0.00019461762],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018137788,0.000014467843,0.0035288725,0.000026438704,0.000008540124,0.00007085587,0.00006364729,0.00006820482,0.99507916,0.000028692182,0.000048104284,0.00088161463],"study_design_scores_gemma":[0.000019264517,0.00040168877,0.4685135,0.000018589617,0.00005173202,0.00062693696,0.001180066,0.0024086528,0.5244076,0.0002066856,0.002140099,0.000025113928],"about_ca_topic_score_codex":0.0019877648,"about_ca_topic_score_gemma":0.0019122907,"teacher_disagreement_score":0.0019877648,"about_ca_system_score_codex":0.00013649306,"about_ca_system_score_gemma":0.00021220846,"threshold_uncertainty_score":0.003952384},"labels":[],"label_agreement":null},{"id":"W2047507752","doi":"10.1007/s00792-007-0087-9","title":"The impact of extremophiles on structural genomics (and vice versa)","year":2007,"lang":"en","type":"review","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute of General Medical Sciences; University of Georgia; University of Toronto; U.S. Department of Energy","keywords":"Structural genomics; Extremophile; Biology; Computational biology; Thermophile; Genome; Genetics; Genomics; Gene; Protein structure; Sequence (biology); Whole genome sequencing; Psychrophile; Evolutionary biology; Biochemistry; Bacteria","score_opus":0.043719979934653305,"score_gpt":0.34189238255888244,"score_spread":0.2981724026242291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047507752","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017514003,0.9977087,0.00021203792,0.000727606,0.00039501456,0.0000017348862,0.00001258328,0.000006592825,0.00076059444],"genre_scores_gemma":[0.00059588184,0.997982,0.0002718071,0.00036562336,0.00033952307,0.0000029832388,0.000019089495,0.0000011614889,0.00042186683],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99984324,0.00002668307,0.000015202758,0.000036235127,0.000058085203,0.000020573],"domain_scores_gemma":[0.99952316,0.00021318175,0.00006455473,0.00001804641,0.00012228625,0.000058821883],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009104546,0.0010221237,0.0012897005,0.0013329217,0.0002867007,0.0015137633,0.0008419834,0.0015893051,0.0023842745],"category_scores_gemma":[0.000846254,0.00028932162,0.00029683905,0.0023407037,0.00078920013,0.0020703755,0.0010540873,0.00191558,0.001567988],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011841604,0.000038713224,0.00021692814,0.008943207,0.00006496144,0.00026569824,0.000059049933,0.0004894042,0.0049931244,0.009060763,0.03634269,0.93940705],"study_design_scores_gemma":[0.000015374997,0.000066891305,0.0007458853,0.0015832222,0.000055013476,0.0006893906,0.00007442435,0.00009897667,0.00095462025,0.00407932,0.99161875,0.000018015591],"about_ca_topic_score_codex":0.0011872873,"about_ca_topic_score_gemma":0.0018608359,"teacher_disagreement_score":0.0023842745,"about_ca_system_score_codex":0.0007707675,"about_ca_system_score_gemma":0.00094474235,"threshold_uncertainty_score":0.007976174},"labels":[],"label_agreement":null},{"id":"W2047777140","doi":"10.1007/s00792-006-0001-x","title":"Halocafeteria seosinensis gen. et sp. nov. (Bicosoecida), a halophilic bacterivorous nanoflagellate isolated from a solar saltern","year":2006,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":66,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Canadian Institute for Advanced Research","funders":"Genome Atlantic","keywords":"Halophile; Biology; Salinity; Genus; 16S ribosomal RNA; Phylogenetic tree; Zoology; Botany; Ecology; Bacteria; Gene; Genetics","score_opus":0.008232740507128307,"score_gpt":0.2031460575962776,"score_spread":0.1949133170891493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047777140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99454594,0.0006985302,0.000836688,0.000090831796,0.000052842293,0.00005176363,0.001662358,0.000021120928,0.0020399818],"genre_scores_gemma":[0.9885711,0.001100695,0.0034206237,0.0001463448,0.00002964183,0.000057664813,0.003659597,0.000012957611,0.0030012957],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984145,0.00001026568,0.00002206563,0.00005139257,0.000039115755,0.000035692687],"domain_scores_gemma":[0.99976736,0.00003674688,0.000029393184,0.000023014936,0.00008381632,0.0000596649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018268179,0.0007317101,0.00033281744,0.0006530434,0.00075844413,0.00057757075,0.00022640564,0.00047549838,0.00069873757],"category_scores_gemma":[0.0004076901,0.00019696762,0.00017647185,0.000559982,0.00023155833,0.0005347168,0.0006828861,0.0002609847,0.00054903916],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049954496,0.0001364643,0.08028469,0.00032577437,0.00005681207,0.0014475153,0.0009455234,0.00039223218,0.8789147,0.00019509131,0.00062554225,0.03617611],"study_design_scores_gemma":[0.00007281797,0.0015403565,0.6867534,0.0002089899,0.00024818708,0.007214406,0.0046883426,0.0018208253,0.26994595,0.00038847752,0.027028015,0.000090140216],"about_ca_topic_score_codex":0.008508398,"about_ca_topic_score_gemma":0.013387522,"teacher_disagreement_score":0.008508398,"about_ca_system_score_codex":0.00016309183,"about_ca_system_score_gemma":0.0004719686,"threshold_uncertainty_score":0.016917706},"labels":[],"label_agreement":null},{"id":"W2048274654","doi":"10.1007/s00792-011-0417-9","title":"Microbial diversity and activity in hypersaline high Arctic spring channels","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Biotechnology Research Institute; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Microbial population biology; Methanogenesis; Microbial ecology; Methanosaeta; Microcosm; Halomonas; Ecology; Archaea; Halophile; Microbial mat; Extremophile; Arctic; Environmental chemistry; Microorganism; Bacteria; Chemistry; Methane","score_opus":0.021388135353571248,"score_gpt":0.21262562973591698,"score_spread":0.19123749438234572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048274654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997433,0.00005259491,0.000025380657,0.000003996757,0.0000013547423,7.1289077e-7,0.000053333057,6.0318126e-7,0.00011880601],"genre_scores_gemma":[0.9995128,0.00006282379,0.00004544376,0.000006570256,0.0000041533276,0.000002537438,0.0001164075,0.0000010768798,0.0002482427],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99983084,0.000020449706,0.000008121269,0.00005052737,0.000034947458,0.00005510763],"domain_scores_gemma":[0.99977535,0.00002917408,0.000046599598,0.000005797,0.00006011797,0.00008298662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002037051,0.00022997592,0.00028521946,0.0006705802,0.00081074884,0.0008129291,0.00016193336,0.00025419178,0.00057557394],"category_scores_gemma":[0.00030642358,0.00017301575,0.0001334377,0.0005297233,0.00036878226,0.00038313252,0.000588758,0.00020233596,0.0001002166],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016669176,0.00008798823,0.7449044,0.000058718262,0.00012451361,0.0001893149,0.0018553941,0.000677974,0.24297357,0.00014116183,0.00009621435,0.007223813],"study_design_scores_gemma":[0.0000047425547,0.00007718072,0.9945575,0.000004081551,0.000016346803,0.00006693418,0.0009718427,0.00055618363,0.0034579758,0.00003756297,0.00024379173,0.0000058886103],"about_ca_topic_score_codex":0.022179661,"about_ca_topic_score_gemma":0.030240286,"teacher_disagreement_score":0.022179661,"about_ca_system_score_codex":0.0004869537,"about_ca_system_score_gemma":0.00051361445,"threshold_uncertainty_score":0.04410112},"labels":[],"label_agreement":null},{"id":"W2050630753","doi":"10.1007/s00792-014-0703-4","title":"Evidence of in situ microbial activity and sulphidogenesis in perennially sub-0 °C and hypersaline sediments of a high Arctic permafrost spring","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; McGill University","funders":"","keywords":"Permafrost; Extreme environment; Methanogenesis; Archaea; Geomicrobiology; Halophile; Microbial population biology; Psychrophile; Microbial mat; Arctic; Environmental chemistry; Microcosm; Ecology; Biogeochemical cycle; Chloroflexi (class); Extremophile; Microbial ecology; Microorganism; Oceanography; Biology; Methane; Geology; 16S ribosomal RNA; Chemistry; Bacteria; Proteobacteria; Paleontology","score_opus":0.020462525103309755,"score_gpt":0.24207512264915104,"score_spread":0.22161259754584128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050630753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99945873,0.000051209085,0.00004454093,0.0000068355907,0.0000022505217,7.7515585e-7,0.000094133226,0.000001768985,0.0003396474],"genre_scores_gemma":[0.9993766,0.000048856586,0.00008413907,0.000008941823,0.000005396285,0.00000254253,0.00019745294,0.0000014933569,0.00027458082],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9999391,0.000007763413,0.000004515809,0.000021254871,0.000011732917,0.00001568501],"domain_scores_gemma":[0.9998584,0.00002507632,0.000025111141,0.0000064350365,0.00003544083,0.000049547765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012889055,0.00024933758,0.0002067473,0.0006938504,0.00081619265,0.0005329748,0.00021348882,0.00028399462,0.0006866192],"category_scores_gemma":[0.00015387563,0.00020391324,0.00012607686,0.00042824273,0.0003994177,0.00020695437,0.00030960765,0.00020754225,0.000115712384],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010089916,0.00007345514,0.5258282,0.000051444735,0.00011270648,0.00029841583,0.0011474112,0.00041325044,0.4653422,0.00013079568,0.000100408935,0.0054927026],"study_design_scores_gemma":[0.000003997985,0.000059723418,0.9951309,0.0000021631035,0.000014090499,0.00006706801,0.000368996,0.00020832165,0.003926163,0.000019921832,0.00019567937,0.0000027974015],"about_ca_topic_score_codex":0.022051496,"about_ca_topic_score_gemma":0.037216704,"teacher_disagreement_score":0.022051496,"about_ca_system_score_codex":0.00038382673,"about_ca_system_score_gemma":0.00031569984,"threshold_uncertainty_score":0.04384625},"labels":[],"label_agreement":null},{"id":"W2059821055","doi":"10.1007/s00792-005-0443-6","title":"Gene cloning, expression and partial characterization of cell division protein FtsZ1 from extremely halophilic archaeon Haloarcula japonica strain TR-1","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Core Research for Evolutional Science and Technology; National Institutes of Natural Sciences; Dalhousie University; Noda Institute for Scientific Research","keywords":"Halophile; Strain (injury); Cloning (programming); Biology; Gene; Archaea; Genetics; Bacteria","score_opus":0.011030523846860983,"score_gpt":0.20887261348128064,"score_spread":0.19784208963441965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059821055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99649054,0.0009092763,0.001049756,0.0001332456,0.000017793685,0.0000142568615,0.000992213,0.000023303703,0.00036956905],"genre_scores_gemma":[0.98642725,0.0010481856,0.002356709,0.000056093217,0.000020815722,0.000025340309,0.0071235006,0.000030391668,0.0029116755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992704,0.000005522834,0.000006756961,0.00001772776,0.000023961195,0.000019002324],"domain_scores_gemma":[0.99985445,0.000035860267,0.000035366786,0.000018753588,0.000021000858,0.00003453473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013161547,0.00037686972,0.00037245036,0.0003498294,0.0002783877,0.00042604926,0.00030100925,0.00028853051,0.0003511161],"category_scores_gemma":[0.00020279175,0.000241193,0.00033570983,0.00045752674,0.0002676004,0.0003069692,0.0003015622,0.0006032843,0.00027459837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000945729,0.00002157848,0.0005126889,0.00004337666,0.0000034683876,0.00006622324,0.000041936666,0.000050317234,0.99827397,0.0000657603,0.00002359194,0.0008025158],"study_design_scores_gemma":[0.00003687582,0.00031606646,0.060820002,0.000019831601,0.000068279245,0.0008895671,0.0002830795,0.001202899,0.9317363,0.00017525603,0.004427872,0.000024008052],"about_ca_topic_score_codex":0.002590856,"about_ca_topic_score_gemma":0.002054156,"teacher_disagreement_score":0.002590856,"about_ca_system_score_codex":0.00034421234,"about_ca_system_score_gemma":0.00039169154,"threshold_uncertainty_score":0.0051515102},"labels":[],"label_agreement":null},{"id":"W2064606080","doi":"10.1007/s00792-006-0506-3","title":"Microbial ecology and biodiversity in permafrost","year":2006,"lang":"en","type":"review","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":218,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Space Agency; McGill University","funders":"","keywords":"Permafrost; Biodiversity; Ecology; Microbial ecology; Ecosystem; Biogeochemical cycle; Environmental science; Microbial population biology; Extant taxon; Biogeochemistry; Habitat; Geomicrobiology; Earth science; Biology; Geology; Environmental biotechnology; Bacteria","score_opus":0.0303968859412744,"score_gpt":0.27503001152584433,"score_spread":0.24463312558456993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064606080","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015025285,0.9992204,0.00005139465,0.00014499271,0.00010897631,0.0000012520592,0.000010268074,0.000001988125,0.00031047693],"genre_scores_gemma":[0.0005813088,0.9987828,0.00010140903,0.000075485164,0.00016356891,0.0000020150292,0.000016515589,3.3611275e-7,0.0002765729],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99983335,0.000021566191,0.000026690188,0.00003502562,0.00006676516,0.000016601689],"domain_scores_gemma":[0.9996444,0.00013830497,0.00008052,0.000010126046,0.00008752142,0.000039171427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007064924,0.0010260708,0.0015800701,0.0021515542,0.00025356098,0.001206175,0.0007498618,0.0011883983,0.0019092952],"category_scores_gemma":[0.0008442803,0.00027250202,0.00028144152,0.0038320704,0.00054604065,0.0013543287,0.0007478665,0.0010572487,0.00076591497],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076349155,0.000028126178,0.00051773764,0.0087375315,0.00006579863,0.00012389489,0.00005608863,0.00024061392,0.0013445053,0.000973209,0.013960286,0.9738758],"study_design_scores_gemma":[0.000022715445,0.00013641582,0.0058159474,0.005547589,0.00023489285,0.0013672318,0.00019280489,0.00015259456,0.00067115965,0.0023912834,0.98343927,0.000028085564],"about_ca_topic_score_codex":0.0026907877,"about_ca_topic_score_gemma":0.0065418216,"teacher_disagreement_score":0.0026907877,"about_ca_system_score_codex":0.00049051736,"about_ca_system_score_gemma":0.0010699135,"threshold_uncertainty_score":0.006387174},"labels":[],"label_agreement":null},{"id":"W2069776901","doi":"10.1007/s00792-012-0437-0","title":"Mesotoga prima gen. nov., sp. nov., the first described mesophilic species of the Thermotogales","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":122,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"Norges Forskningsråd; National Aeronautics and Space Administration; U.S. Department of Energy; Biological and Environmental Research; National Science Foundation","keywords":"Strain (injury); Biology; 16S ribosomal RNA; Xylose; Thiosulfate; Phospholipid; Mesophile; Biochemistry; Phylogenetic tree; Microbiology; Fermentation; Bacteria; Sulfur; Chemistry; Gene; Genetics; Organic chemistry","score_opus":0.02286961383989667,"score_gpt":0.20709610714170582,"score_spread":0.18422649330180915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069776901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9016615,0.032717615,0.017529827,0.0014775502,0.0026434057,0.0006391907,0.011555566,0.00050553906,0.031269763],"genre_scores_gemma":[0.9317013,0.013159407,0.03894789,0.0012299435,0.00030661415,0.00041351025,0.005154433,0.00006479594,0.00902196],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997689,0.0000126426785,0.000034854827,0.00010312903,0.00004002915,0.000040449817],"domain_scores_gemma":[0.9994861,0.000108331464,0.00013922245,0.00006372361,0.0000950373,0.00010756051],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017909592,0.00092243194,0.000627758,0.0010016451,0.0009944557,0.0013173273,0.0005157492,0.0009922179,0.0013431918],"category_scores_gemma":[0.0010387097,0.00039689007,0.00030043157,0.000881602,0.0005846931,0.001352492,0.00166014,0.0007525005,0.0010086442],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012678349,0.00046698234,0.14996721,0.0037222912,0.00022495081,0.013006404,0.003185641,0.0022940848,0.42891905,0.003330808,0.011187905,0.3824269],"study_design_scores_gemma":[0.00012766045,0.000837313,0.5701418,0.0021437483,0.00058261753,0.032766085,0.005702268,0.004520978,0.07527896,0.0036363,0.3040721,0.0001901638],"about_ca_topic_score_codex":0.0027165818,"about_ca_topic_score_gemma":0.0066225575,"teacher_disagreement_score":0.0027165818,"about_ca_system_score_codex":0.0002890509,"about_ca_system_score_gemma":0.0007689071,"threshold_uncertainty_score":0.0054015517},"labels":[],"label_agreement":null},{"id":"W2073525642","doi":"10.1007/s00792-010-0336-1","title":"Characterization of Hymenobacter isolates from Victoria Upper Glacier, Antarctica reveals five new species and substantial non-vertical evolution within this genus","year":2010,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Natural Sciences and Engineering Research Council of Canada; Universität Wien","keywords":"Biology; 16S ribosomal RNA; Genus; Taxonomy (biology); Botany; Zoology; Bacteria; Paleontology","score_opus":0.00836750516879103,"score_gpt":0.21585710681430267,"score_spread":0.20748960164551164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073525642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988777,0.00017915916,0.00013106789,0.000021633907,0.000003220117,0.00001238635,0.00035486254,0.0000044725234,0.00041547956],"genre_scores_gemma":[0.99623895,0.0003764796,0.0008101222,0.000048756123,0.000006075056,0.000017476155,0.0015277583,0.0000062015374,0.0009681008],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998512,0.000012322627,0.000014131464,0.000030441082,0.00003347609,0.000058321075],"domain_scores_gemma":[0.99968123,0.000050748797,0.000060031532,0.000040673483,0.000061987776,0.00010534335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020789856,0.00044722675,0.00026600904,0.0006768381,0.00084306236,0.00068223494,0.00030260073,0.00041494516,0.00063394144],"category_scores_gemma":[0.0004736197,0.00018115604,0.00025009565,0.0011569248,0.0003143798,0.00030550908,0.00051449146,0.00031896785,0.0002154016],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012168062,0.00021951413,0.31545356,0.00024509293,0.00010092859,0.0005706619,0.004318985,0.0003904837,0.64260983,0.0002660984,0.00026481185,0.034343224],"study_design_scores_gemma":[0.000010831366,0.00039354872,0.9722598,0.00004328388,0.00007014426,0.0007199877,0.0030850796,0.00039750763,0.019561289,0.000094930074,0.0033498425,0.000013877449],"about_ca_topic_score_codex":0.01733654,"about_ca_topic_score_gemma":0.023610938,"teacher_disagreement_score":0.01733654,"about_ca_system_score_codex":0.00042463478,"about_ca_system_score_gemma":0.0006522842,"threshold_uncertainty_score":0.034471273},"labels":[],"label_agreement":null},{"id":"W2077031479","doi":"10.1007/s00792-013-0571-3","title":"Review: the Antarctic Chlamydomonas raudensis: an emerging model for cold adaptation of photosynthesis","year":2013,"lang":"en","type":"review","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Psychrophile; Biology; Ecology; Photosynthesis; Microbial ecology; Ecosystem; Phytoplankton; Extreme environment; Botany; Nutrient; Bacteria","score_opus":0.12043587717089614,"score_gpt":0.3505667716476249,"score_spread":0.23013089447672874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077031479","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000806335,0.9977348,0.00009067201,0.000742123,0.00084030174,0.00000339767,0.000041812367,0.0000087331855,0.0004574634],"genre_scores_gemma":[0.0005386491,0.998207,0.000080811194,0.00037836167,0.00044547283,0.0000030343629,0.000044951186,0.0000011293337,0.00030074606],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99981445,0.000021966272,0.000030318224,0.00004078417,0.000072072595,0.000020477355],"domain_scores_gemma":[0.9993525,0.00023261423,0.0001215163,0.000014349908,0.00017898263,0.00010009337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005805068,0.0012274706,0.0015680463,0.0018301245,0.0003646987,0.0013667203,0.001035214,0.0014338734,0.0031038136],"category_scores_gemma":[0.0014525917,0.00025979182,0.00042107483,0.0033227894,0.00063318247,0.0016247319,0.0009990304,0.0017140711,0.0015393558],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007608428,0.000018599772,0.00023518474,0.03121404,0.00015100217,0.00021253777,0.000073756644,0.00038954205,0.001485937,0.0019699947,0.15135159,0.8128218],"study_design_scores_gemma":[0.000011286324,0.000031634383,0.00076313136,0.0032523482,0.00018904614,0.0003916253,0.00007596103,0.000045827073,0.00012914186,0.00096227654,0.99412966,0.000018136585],"about_ca_topic_score_codex":0.0023134637,"about_ca_topic_score_gemma":0.004423319,"teacher_disagreement_score":0.0031038136,"about_ca_system_score_codex":0.0007583097,"about_ca_system_score_gemma":0.0027263334,"threshold_uncertainty_score":0.010383308},"labels":[],"label_agreement":null},{"id":"W2084485932","doi":"10.1007/s00792-006-0005-6","title":"Prokaryotes that grow optimally in acid have purine-poor codons in long open reading frames","year":2006,"lang":"en","type":"article","venue":"Extremophiles","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Open reading frame; Purine; Biology; Amino acid; Purine metabolism; Biochemistry; Nucleic acid; Glycine; Pyrimidine; Genetics; Gene; Peptide sequence","score_opus":0.018097685007866703,"score_gpt":0.2551896123445713,"score_spread":0.23709192733670462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084485932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9811841,0.0042767283,0.010740575,0.00028284965,0.000098798766,0.000037132526,0.00047707124,0.00033483267,0.0025678487],"genre_scores_gemma":[0.98730034,0.0010658439,0.008583762,0.00013596899,0.000056040906,0.000031015323,0.0010483328,0.00005390224,0.0017247903],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997725,0.00004474005,0.000023049408,0.000034850098,0.00006808342,0.00005682261],"domain_scores_gemma":[0.9992361,0.00017630271,0.00017721162,0.000078751036,0.0001225662,0.00020900338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002733005,0.0009971819,0.0007758511,0.00043650935,0.0005494585,0.001250594,0.0002481991,0.00080202933,0.0005603125],"category_scores_gemma":[0.00062334316,0.0003844559,0.00024925487,0.00039500312,0.00058584614,0.00080421043,0.0005908115,0.0006677757,0.0009023486],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004316108,0.00003782709,0.00190526,0.00012100317,0.000016060223,0.0003806552,0.00006622407,0.00024634952,0.9915337,0.0007065949,0.00016371682,0.004391021],"study_design_scores_gemma":[0.000036599482,0.00062528526,0.012824681,0.000048809245,0.00007136818,0.0014560539,0.00037341565,0.0011347776,0.9747176,0.0012895893,0.007378415,0.000043493397],"about_ca_topic_score_codex":0.00033218187,"about_ca_topic_score_gemma":0.00066322216,"teacher_disagreement_score":0.001250594,"about_ca_system_score_codex":0.00031155214,"about_ca_system_score_gemma":0.00027192378,"threshold_uncertainty_score":0.0022605062},"labels":[],"label_agreement":null},{"id":"W2084575344","doi":"10.1007/s00792-013-0599-4","title":"Molecular characterization of pHRDV1, a new virus-like mobile genetic element closely related to pleomorphic viruses in haloarchaea","year":2013,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Yunnan University; Wuhan University; Chinese Academy of Sciences; Helsingin Yliopisto","keywords":"Haloarchaea; Plasmid; Biology; Mobile genetic elements; Genome; Virus; Gene; Genetics; Virology","score_opus":0.008977175618924967,"score_gpt":0.22899799728893702,"score_spread":0.22002082167001205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084575344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968477,0.0005522186,0.0013281544,0.000046663856,0.000012736232,0.00001825359,0.00067249744,0.000012771954,0.00050895475],"genre_scores_gemma":[0.9899693,0.00045539186,0.0027271186,0.00007366725,0.000012112321,0.000023539675,0.0042247605,0.000022876331,0.0024912304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990964,0.00000776871,0.0000060184875,0.000029269131,0.000025705036,0.000021650352],"domain_scores_gemma":[0.99968505,0.00008462914,0.00006672884,0.0000356688,0.00003652668,0.00009131325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014866842,0.00033233548,0.00031278635,0.00046971513,0.00026943473,0.00049144094,0.00027838958,0.00044157612,0.0006436801],"category_scores_gemma":[0.00032455777,0.00015922799,0.00040908495,0.00029910175,0.00033006837,0.0002303525,0.00028315245,0.000624035,0.00042130673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006771347,0.000015146788,0.0013462728,0.000037122678,0.0000065671434,0.000057196048,0.000056184104,0.000051946845,0.9970481,0.00007635283,0.000013894504,0.001223582],"study_design_scores_gemma":[0.00004065629,0.0006707422,0.2585806,0.00005140206,0.00011006908,0.0017441495,0.0007084084,0.0020713531,0.7240888,0.00031330265,0.011579911,0.000040635514],"about_ca_topic_score_codex":0.002399962,"about_ca_topic_score_gemma":0.002584678,"teacher_disagreement_score":0.002399962,"about_ca_system_score_codex":0.00047705285,"about_ca_system_score_gemma":0.00040246546,"threshold_uncertainty_score":0.0047720075},"labels":[],"label_agreement":null},{"id":"W2084979881","doi":"10.1007/s00792-014-0693-2","title":"Extremely ‘vanadiphilic’ multiply metal-resistant and halophilic aerobic anoxygenic phototrophs, strains EG13 and EG8, from hypersaline springs in Canada","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Anoxygenic photosynthesis; Phototroph; Halophile; Bacteriochlorophyll; Biology; Botany; Extremophile; Salinity; Pigment; Gastropoda; Psychrophile; Extreme environment; Bacteria; Ecology; Photosynthesis; Chemistry; Microorganism","score_opus":0.006526113336163755,"score_gpt":0.1653272893666301,"score_spread":0.15880117603046634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084979881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779546,0.00013631379,0.00013674253,0.000029980396,0.000004390366,0.000012364119,0.0008512031,0.0000059830727,0.0010275315],"genre_scores_gemma":[0.995059,0.00021008999,0.00046033328,0.00003435681,0.0000026818282,0.0000077247005,0.0018540572,0.0000062923546,0.0023654595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99958104,0.00001140525,0.00001933947,0.000084309395,0.00013145785,0.00017257179],"domain_scores_gemma":[0.9997601,0.000010084119,0.000014749018,0.000008073868,0.00013903277,0.00006790206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013848617,0.00037831388,0.0004110221,0.0007164682,0.0018411049,0.000760338,0.00057360926,0.00025340318,0.000760944],"category_scores_gemma":[0.00026663495,0.00025546417,0.00019486013,0.0012905956,0.0003983492,0.00020739251,0.00064318,0.0003917231,0.0002141614],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014087684,0.0001460966,0.28241524,0.00019765832,0.0000857046,0.00091738947,0.004584632,0.00069454976,0.68799436,0.00038252605,0.00088183273,0.020291211],"study_design_scores_gemma":[0.000018246947,0.00014420894,0.95310134,0.000025341424,0.000054217162,0.00047092047,0.0058910297,0.000547995,0.03515487,0.00009984852,0.004463846,0.00002817152],"about_ca_topic_score_codex":0.7986074,"about_ca_topic_score_gemma":0.90375084,"teacher_disagreement_score":0.20139259,"about_ca_system_score_codex":0.0029858453,"about_ca_system_score_gemma":0.0037576675,"threshold_uncertainty_score":0.4051572},"labels":[],"label_agreement":null},{"id":"W2091364937","doi":"10.1007/s00792-012-0445-0","title":"Hydroxybutyrate prevents protein aggregation in the halotolerant bacterium Pseudomonas sp. CT13 under abiotic stress","year":2012,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Public Health Agency of Canada","keywords":"Halotolerance; Polyhydroxybutyrate; Extremophile; Osmolyte; Polyhydroxyalkanoates; Pseudomonas; Chemical chaperone; Bacteria; Biochemistry; Chemistry; Enzyme; Biology; Mutant; Thermophile","score_opus":0.01103712041554079,"score_gpt":0.22422919324698298,"score_spread":0.2131920728314422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091364937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99898404,0.00027557532,0.00027216098,0.000059455026,0.000014674766,0.000005995475,0.00009146512,0.000016929158,0.00027975676],"genre_scores_gemma":[0.9979456,0.00021685747,0.00033947927,0.000036822672,0.0000060525817,0.00000953537,0.00031264662,0.000016667991,0.001116219],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982685,0.000037992446,0.000015922871,0.000021694608,0.000048223752,0.00004922049],"domain_scores_gemma":[0.99984026,0.000027261474,0.00004422029,0.000024513212,0.000022187784,0.00004160281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015255479,0.0003011996,0.00023699268,0.000077636134,0.00015441947,0.00031410868,0.0002144125,0.00024121003,0.00073954056],"category_scores_gemma":[0.00019703447,0.00015071823,0.0001565865,0.00010272156,0.00016400458,0.00012251023,0.00025271313,0.00045585528,0.00022395253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021158667,0.00003118369,0.00023653188,0.000015128089,0.0000038005958,0.000021335243,0.0000103652665,0.000021178663,0.99891317,0.000009045843,0.000024291554,0.0005024069],"study_design_scores_gemma":[0.000017864599,0.000302394,0.0065554716,0.000005584157,0.000009188596,0.00006299737,0.000039407147,0.0003409616,0.99220675,0.000018843564,0.00043625289,0.0000042683696],"about_ca_topic_score_codex":0.0018261324,"about_ca_topic_score_gemma":0.0024895037,"teacher_disagreement_score":0.0018261324,"about_ca_system_score_codex":0.00018728976,"about_ca_system_score_gemma":0.00028503,"threshold_uncertainty_score":0.0036309361},"labels":[],"label_agreement":null},{"id":"W2102999930","doi":"10.1007/s00792-004-0425-0","title":"The genome of BCJA1c: a bacteriophage active against the alkaliphilic bacterium, Bacillus clarkii","year":2004,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Temperateness; Bacteriophage; Lysogenic cycle; Prophage; Genome; Integrase; Genetics; Gene; Lysin; Whole genome sequencing; Microbiology; Escherichia coli","score_opus":0.007921156489856062,"score_gpt":0.20835701816764463,"score_spread":0.20043586167778857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102999930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9806662,0.0024518054,0.003823116,0.0003946952,0.00011635428,0.00008968065,0.009710002,0.0002358165,0.0025124522],"genre_scores_gemma":[0.94567007,0.0015796663,0.008125093,0.00028024564,0.000050513896,0.00007028278,0.038208075,0.00023449342,0.0057816547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998404,0.000013738058,0.000006649059,0.00004202146,0.00006524899,0.000031987453],"domain_scores_gemma":[0.9996728,0.000072481715,0.00006236514,0.000021630634,0.00007319496,0.000097592114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020186942,0.00048692588,0.00039237546,0.00056442694,0.00049714284,0.0006123033,0.00031984848,0.00060394965,0.00070961326],"category_scores_gemma":[0.0005191183,0.00019729995,0.000256799,0.00067705516,0.00035425025,0.00025008278,0.0002757572,0.0010589109,0.00039211073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000500268,0.00004358237,0.00087619305,0.0001842799,0.000013787448,0.000059134596,0.00011681716,0.0001560215,0.9934788,0.00019536474,0.00031229708,0.004063475],"study_design_scores_gemma":[0.00018413902,0.0005442986,0.120752476,0.00015200824,0.00028893727,0.001267449,0.0006707986,0.0035634257,0.8342499,0.0006636098,0.037565343,0.000097700125],"about_ca_topic_score_codex":0.01275762,"about_ca_topic_score_gemma":0.008662999,"teacher_disagreement_score":0.01275762,"about_ca_system_score_codex":0.0009785355,"about_ca_system_score_gemma":0.0010936793,"threshold_uncertainty_score":0.025366724},"labels":[],"label_agreement":null},{"id":"W2119844501","doi":"10.1007/s00792-014-0716-z","title":"Potassium stress growth characteristics and energetics in the haloarchaeon Haloarcula marismortui","year":2014,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Northern British Columbia","funders":"University of Northern British Columbia","keywords":"Halophile; Potassium; Intracellular; Sodium; Intracellular pH; Chemistry; Rubidium; Ion transporter; Ion; Biophysics; Biochemistry; Biology; Bacteria; Organic chemistry","score_opus":0.007736774999771349,"score_gpt":0.19940651397656547,"score_spread":0.19166973897679412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119844501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998563,0.0003485762,0.00013167661,0.000028036155,0.000004016589,0.0000037636696,0.0005519618,0.000011696642,0.0003572502],"genre_scores_gemma":[0.99719244,0.00022472396,0.00031442285,0.00002044509,0.0000028591662,0.000010866593,0.001098031,0.000012977929,0.0011232351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998497,0.000018297582,0.000012279261,0.000044567623,0.000047703314,0.000027429993],"domain_scores_gemma":[0.9998666,0.000019610787,0.000032779775,0.000011198244,0.00004297428,0.000026784553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010722138,0.0003185178,0.00025778633,0.00041409084,0.00021097194,0.0003514547,0.00027654786,0.00026744304,0.00036300442],"category_scores_gemma":[0.00018498306,0.00013506295,0.00022913437,0.0003443458,0.00016714212,0.00020252085,0.0005076218,0.00021637359,0.00023374683],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002278715,0.00003502109,0.007190236,0.000036762252,0.000010712524,0.00007016102,0.00010180562,0.00012989089,0.9900087,0.00002993545,0.00003896987,0.002119808],"study_design_scores_gemma":[0.00001768453,0.0008964425,0.6197701,0.000015803085,0.000049069284,0.00033378185,0.0011021879,0.0016728509,0.37338582,0.00014091773,0.0025655944,0.00004978235],"about_ca_topic_score_codex":0.0076024076,"about_ca_topic_score_gemma":0.0067004287,"teacher_disagreement_score":0.0076024076,"about_ca_system_score_codex":0.0003979448,"about_ca_system_score_gemma":0.0002578923,"threshold_uncertainty_score":0.015116274},"labels":[],"label_agreement":null},{"id":"W2131889718","doi":"10.1007/s00792-003-0329-4","title":"Desulfurobacterium crinifex sp. nov., a novel thermophilic, pinkish-streamer forming, chemolithoautotrophic bacterium isolated from a Juan de Fuca Ridge hydrothermal vent and amendment of the genus Desulfurobacterium","year":2003,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Thermophile; Hydrothermal vent; Hydrothermal circulation; Biology; Sulfur; 16S ribosomal RNA; Strain (injury); Ridge; Genus; Bacteria; Botany; Chemistry; Paleontology; Organic chemistry","score_opus":0.012316238467404482,"score_gpt":0.2073900843360755,"score_spread":0.19507384586867102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131889718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98622024,0.0027121208,0.0035968504,0.0002781118,0.00012645767,0.00016454104,0.0022997425,0.000112590766,0.0044892807],"genre_scores_gemma":[0.9697842,0.0033725298,0.011985705,0.00035199584,0.00006530254,0.00010793083,0.006763066,0.000043504522,0.007525802],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99981636,0.000011455228,0.000023715304,0.00006463263,0.000044353204,0.00003956769],"domain_scores_gemma":[0.9996561,0.00002291208,0.0000824634,0.00003511921,0.00009516703,0.00010819087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019846974,0.0012866448,0.0004252347,0.0006968875,0.00058794464,0.00078079,0.0003832408,0.0005818512,0.0006934855],"category_scores_gemma":[0.0005529083,0.00026405198,0.00021134182,0.0007260926,0.00024769886,0.00067118864,0.000646206,0.000461506,0.0005753565],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039308102,0.00012944844,0.02896632,0.00049236027,0.00005041004,0.002718863,0.0006521507,0.0004646684,0.9242482,0.0003069073,0.0006598968,0.040917534],"study_design_scores_gemma":[0.0001414142,0.0014791341,0.38793883,0.00031953226,0.00038973687,0.023258585,0.0026123063,0.0034931093,0.51512563,0.0005253398,0.06461957,0.00009685926],"about_ca_topic_score_codex":0.008689895,"about_ca_topic_score_gemma":0.011183419,"teacher_disagreement_score":0.008689895,"about_ca_system_score_codex":0.00030448698,"about_ca_system_score_gemma":0.0007984446,"threshold_uncertainty_score":0.017278612},"labels":[],"label_agreement":null},{"id":"W2144458938","doi":"10.1007/s00792-005-0450-7","title":"Aluminum-tolerant Pseudomonas fluorescens: ROS toxicity and enhanced NADPH production","year":2005,"lang":"en","type":"article","venue":"Extremophiles","topic":"Aluminum toxicity and tolerance in plants and animals","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Laurentian University","funders":"","keywords":"Pseudomonas fluorescens; Toxicity; Microbiology; Chemistry; Pseudomonas; Microbial ecology; Biology; Bacteria; Organic chemistry; Genetics","score_opus":0.016931007922522535,"score_gpt":0.21058418100911974,"score_spread":0.1936531730865972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144458938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958105,0.00050489017,0.0023955356,0.00024850605,0.000022260085,0.000012716357,0.00022494949,0.00007632128,0.0007041723],"genre_scores_gemma":[0.9975176,0.00016610605,0.00063874543,0.000037752892,0.00000621599,0.0000065214685,0.00024241164,0.000010188765,0.0013745341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998814,0.000012016295,0.000006355834,0.000018934128,0.000044594926,0.000036714813],"domain_scores_gemma":[0.9999025,0.00001535721,0.000022336382,0.000012127484,0.000017635793,0.000030077075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013040309,0.00043428157,0.0002717693,0.00019224106,0.0001998478,0.00026292805,0.0002643535,0.00034341865,0.00062178855],"category_scores_gemma":[0.000173857,0.00013515145,0.00012408152,0.0001663892,0.00018947174,0.00027163487,0.00025890363,0.00042889887,0.00019936553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081704544,0.0000133928,0.00022678985,0.000007931543,0.0000011867077,0.000063665495,0.000005150273,0.000015922145,0.9989396,0.000039669256,0.000022513559,0.00058248674],"study_design_scores_gemma":[0.000013353653,0.00013271708,0.008345995,0.0000015126815,0.0000066921098,0.0003454864,0.000039797167,0.0005903126,0.9898665,0.00008901632,0.0005642501,0.0000043759537],"about_ca_topic_score_codex":0.0020646653,"about_ca_topic_score_gemma":0.00236026,"teacher_disagreement_score":0.0020646653,"about_ca_system_score_codex":0.0004239363,"about_ca_system_score_gemma":0.00022141915,"threshold_uncertainty_score":0.00410527},"labels":[],"label_agreement":null},{"id":"W2157502688","doi":"10.1007/s00792-008-0176-4","title":"Identity and physiology of a new psychrophilic eukaryotic green alga, Chlorella sp., strain BI, isolated from a transitory pond near Bratina Island, Antarctica","year":2008,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Science Council; University of Delaware","keywords":"Psychrophile; Chlorella; Biology; Botany; Algae; Chlorophyta; Extremophile; Photosynthesis; Ecology; Microorganism; Bacteria","score_opus":0.022788365098936017,"score_gpt":0.2486448567847093,"score_spread":0.22585649168577326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157502688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876803,0.00016477438,0.00009382197,0.000034078657,0.0000075661155,0.000008941783,0.0005206239,0.000003329175,0.0003987544],"genre_scores_gemma":[0.9948336,0.00036323478,0.00064479467,0.000074632466,0.000014359953,0.000029499435,0.0029692764,0.0000067292067,0.0010638951],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998292,0.000013819163,0.000017512195,0.00004700068,0.000057840723,0.000034646746],"domain_scores_gemma":[0.9996985,0.000029422177,0.000060418828,0.000027099706,0.000102714446,0.000081830825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011536775,0.0005006183,0.00030665123,0.00067973795,0.0005604422,0.0007954036,0.00021152869,0.00035705778,0.0004737118],"category_scores_gemma":[0.0002544949,0.00017009949,0.00017764042,0.0009723345,0.00040627862,0.00037185574,0.0005741064,0.00033786634,0.000331606],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002516681,0.00004469014,0.022332307,0.00007263673,0.000015862468,0.0001582757,0.0006308445,0.000041278683,0.97400993,0.00003361997,0.00006568581,0.0023431205],"study_design_scores_gemma":[0.000030389825,0.00074186653,0.92398375,0.000024913212,0.000080398364,0.002270811,0.0031507178,0.00028004014,0.06494575,0.00006739859,0.004386269,0.00003767107],"about_ca_topic_score_codex":0.0060888412,"about_ca_topic_score_gemma":0.0035940344,"teacher_disagreement_score":0.0060888412,"about_ca_system_score_codex":0.00021260741,"about_ca_system_score_gemma":0.0003970679,"threshold_uncertainty_score":0.012106836},"labels":[],"label_agreement":null},{"id":"W2409386287","doi":"10.1007/s00792-016-0840-z","title":"Characterization of two key enzymes for aromatic amino acid biosynthesis in symbiotic archaea","year":2016,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Archaea; Enzyme; Biochemistry; Biosynthesis; Microbial ecology; Biology; Amino acid; Bacteria; Chemistry; Gene; Genetics","score_opus":0.00960850709863325,"score_gpt":0.2208337102344585,"score_spread":0.21122520313582524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409386287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959175,0.0009077037,0.0020606357,0.000069060814,0.0000148931895,0.000016375183,0.00060802384,0.000019178993,0.0003866228],"genre_scores_gemma":[0.99262166,0.00049741485,0.0034466041,0.0000376863,0.000008218216,0.000021688611,0.0021174238,0.000020528001,0.0012288835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986887,0.000014759404,0.000015387597,0.000033040822,0.00003413848,0.000033805045],"domain_scores_gemma":[0.9997024,0.000058549944,0.000052790943,0.00004587974,0.00006055641,0.000079860554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015289396,0.0005894928,0.0003374104,0.00039537047,0.000194495,0.00062194536,0.00022405313,0.0004807777,0.00042882364],"category_scores_gemma":[0.00046517735,0.00019504788,0.00027887573,0.00047393134,0.00023078249,0.00035975088,0.00030239252,0.0003846439,0.0003088809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019591016,0.00002104233,0.0013052964,0.00002908151,0.0000070643946,0.0001148853,0.00003392352,0.000035325444,0.99647945,0.00006083513,0.000015940093,0.0017013189],"study_design_scores_gemma":[0.000021254393,0.00022273404,0.027094673,0.0000098333085,0.00004333684,0.00093400566,0.00021018003,0.0006211462,0.9679294,0.00010939451,0.0027921821,0.000011867208],"about_ca_topic_score_codex":0.0010458925,"about_ca_topic_score_gemma":0.0007679258,"teacher_disagreement_score":0.0010458925,"about_ca_system_score_codex":0.00023149609,"about_ca_system_score_gemma":0.0003270326,"threshold_uncertainty_score":0.002079606},"labels":[],"label_agreement":null},{"id":"W2547865194","doi":"10.1007/s00792-016-0888-9","title":"Genetic background of enhanced radioresistance in an anhydrobiotic insect: transcriptional response to ionizing radiations and desiccation","year":2016,"lang":"en","type":"article","venue":"Extremophiles","topic":"Tardigrade Biology and Ecology","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University","keywords":"Cryptobiosis; Desiccation; Ionizing radiation; Radioresistance; Biology; Desiccation tolerance; Gene; Genetics; Cell biology; Irradiation; Botany","score_opus":0.033198026905895954,"score_gpt":0.22499337431095975,"score_spread":0.1917953474050638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2547865194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981786,0.000080413054,0.0007726776,0.000050288774,0.000012707829,0.000016771903,0.00030754623,0.000037958405,0.00054305303],"genre_scores_gemma":[0.9956559,0.00008550205,0.001134065,0.000070847804,0.000008617861,0.000029697343,0.0005988691,0.000062090265,0.0023543492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984574,0.000025263642,0.000020889616,0.00004770649,0.000032338834,0.000028116674],"domain_scores_gemma":[0.99974245,0.000042715303,0.00007629576,0.000031197374,0.000016682674,0.000090679605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009974534,0.0003904326,0.00020822191,0.00035018576,0.00017486417,0.00024655563,0.0003469614,0.00030405563,0.002458185],"category_scores_gemma":[0.00013850188,0.00020239501,0.00021248177,0.00019980187,0.00023532737,0.00010820639,0.00033357408,0.0008367,0.00027648534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008412264,0.000018581064,0.00018496686,0.0000067928954,0.0000040452596,0.000037797687,0.0000109357525,0.000019264247,0.9992605,0.000046701567,0.000010412253,0.0003159445],"study_design_scores_gemma":[0.00008307052,0.0006695659,0.09659016,0.00001859556,0.000071180875,0.0008794271,0.0002776445,0.002263264,0.89598054,0.00010617304,0.003025897,0.000034494267],"about_ca_topic_score_codex":0.0009326431,"about_ca_topic_score_gemma":0.0020587484,"teacher_disagreement_score":0.002458185,"about_ca_system_score_codex":0.00033530762,"about_ca_system_score_gemma":0.00017342488,"threshold_uncertainty_score":0.008223474},"labels":[],"label_agreement":null},{"id":"W2608407480","doi":"10.1007/s00792-017-0933-3","title":"In-depth characterization of bacterial and archaeal communities present in the abandoned Kettara pyrrhotite mine tailings (Morocco)","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canada Research Chairs; International Development Research Centre; Institut de Recherche pour le Développement","keywords":"Archaea; Tailings; Firmicutes; Proteobacteria; Acid mine drainage; Chloroflexi (class); Phylum; Acidithiobacillus; Microbial population biology; Biology; Pyrrhotite; Stenotrophomonas; Phylogenetic diversity; Bioleaching; Environmental chemistry; Geology; Geochemistry; Bacteria; Chemistry; Phylogenetics; Pyrite; 16S ribosomal RNA","score_opus":0.02855529935954475,"score_gpt":0.2510754322540287,"score_spread":0.2225201328944839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608407480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992601,0.00023957859,0.00009796017,0.000008906382,0.000002816348,0.000004343896,0.00018922355,0.0000016010869,0.0001953786],"genre_scores_gemma":[0.9980811,0.00029316795,0.0004066822,0.000023735998,0.000008172255,0.000012642367,0.00039295963,0.0000025616573,0.00077895547],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998363,0.000011644401,0.00001014605,0.00004646097,0.000030603198,0.00006473602],"domain_scores_gemma":[0.99989045,0.00001134758,0.000030590265,0.0000039317374,0.000037076505,0.000026527929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015745728,0.0004236783,0.00046817385,0.0009900702,0.0006115909,0.0006385387,0.00018023927,0.00034120397,0.000419342],"category_scores_gemma":[0.00015129535,0.00014768165,0.00022918198,0.0005674747,0.00029270537,0.0002538297,0.0004661386,0.00018987666,0.00023388682],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003661391,0.000073813346,0.19173203,0.00018264676,0.00004445064,0.0005036099,0.0020769343,0.00016339828,0.7953485,0.000059937018,0.00005228388,0.00939619],"study_design_scores_gemma":[0.0000042665247,0.00027259288,0.9761598,0.000020628468,0.00003952845,0.00049013126,0.0025042684,0.0002615624,0.018620446,0.000025381582,0.0015921955,0.000009300763],"about_ca_topic_score_codex":0.009058422,"about_ca_topic_score_gemma":0.014143854,"teacher_disagreement_score":0.009058422,"about_ca_system_score_codex":0.00027046396,"about_ca_system_score_gemma":0.0003305193,"threshold_uncertainty_score":0.018011391},"labels":[],"label_agreement":null},{"id":"W2613781774","doi":"10.1007/s00792-017-0941-3","title":"Aspergillus atacamensis and A. salisburgensis: two new halophilic species from hypersaline/arid habitats with a phialosimplex-like morphology","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Victoria Park","funders":"","keywords":"Biology; Aspergillus; Halophile; Botany; Subgenus; Microbiology; Taxonomy (biology); Bacteria; Genetics","score_opus":0.0231323817681396,"score_gpt":0.24282843637515886,"score_spread":0.21969605460701924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2613781774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968509,0.00034813222,0.0005771949,0.00005705781,0.000037381047,0.00006401242,0.0006997593,0.000016377297,0.0013491615],"genre_scores_gemma":[0.9959371,0.000300584,0.0013276727,0.00006062998,0.000029882323,0.00003914633,0.0015006245,0.000005111546,0.00079928647],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998468,0.000011265332,0.000025797131,0.00003855583,0.00003611196,0.00004146627],"domain_scores_gemma":[0.99975485,0.000023095165,0.000060611186,0.000023452372,0.00004958257,0.00008841182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007736609,0.0005508423,0.0003053204,0.0011169204,0.00062160636,0.0006313806,0.00041160278,0.0003682335,0.0005819352],"category_scores_gemma":[0.00019064784,0.00013119896,0.00028613026,0.0008975416,0.00032586738,0.00032869363,0.0007419795,0.0002906487,0.00029957492],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008198992,0.00017748238,0.058004115,0.0001606398,0.00005686126,0.0040266355,0.0007360808,0.00011794067,0.91462106,0.00022655354,0.00016211941,0.020890517],"study_design_scores_gemma":[0.00008797123,0.00077746407,0.86451584,0.000044548247,0.00015057375,0.013230944,0.0032060577,0.00045825253,0.104788505,0.00038645932,0.012290152,0.000063314495],"about_ca_topic_score_codex":0.0042909007,"about_ca_topic_score_gemma":0.005033333,"teacher_disagreement_score":0.0042909007,"about_ca_system_score_codex":0.00018945152,"about_ca_system_score_gemma":0.00032845052,"threshold_uncertainty_score":0.008531868},"labels":[],"label_agreement":null},{"id":"W2753817968","doi":"10.1007/s00792-017-0960-0","title":"Wallemia peruviensis sp. nov., a new xerophilic fungus from an agricultural setting in South America","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Botany; Halotolerance; Ecology; Salinity","score_opus":0.019878464420447564,"score_gpt":0.23538404909863228,"score_spread":0.2155055846781847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753817968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98871535,0.0033710618,0.0017078426,0.00032738672,0.00007654901,0.00011957135,0.00066421466,0.000042581898,0.004975473],"genre_scores_gemma":[0.988577,0.0035943154,0.0039262394,0.00040291197,0.000049656643,0.00007810835,0.001027282,0.000010712223,0.0023338834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982446,0.000018113036,0.000026005078,0.00006621917,0.00002807334,0.000037148522],"domain_scores_gemma":[0.9997731,0.000043961845,0.000058360354,0.000019014986,0.000042693802,0.000062877385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027494653,0.000966305,0.00035333753,0.0009811677,0.0012860561,0.0010681521,0.00042815946,0.00093746465,0.00061159616],"category_scores_gemma":[0.00042794828,0.00022206863,0.00016621557,0.0010123898,0.0005113249,0.0011127495,0.0013840358,0.00061183196,0.00029243284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006947347,0.0004020513,0.27441505,0.0018688878,0.00017464187,0.06050205,0.012430299,0.0009979033,0.4962459,0.0010058221,0.0020204643,0.14924228],"study_design_scores_gemma":[0.00006950932,0.0008137673,0.89451486,0.0005089571,0.00018756281,0.03583933,0.013412726,0.0005954194,0.015313563,0.0008208665,0.03784267,0.000080813275],"about_ca_topic_score_codex":0.0041932543,"about_ca_topic_score_gemma":0.010482427,"teacher_disagreement_score":0.0041932543,"about_ca_system_score_codex":0.0001776384,"about_ca_system_score_gemma":0.0005329951,"threshold_uncertainty_score":0.0083376765},"labels":[],"label_agreement":null},{"id":"W2779746099","doi":"10.1007/s00792-017-0987-2","title":"Optimization of the production of an extracellular and thermostable amylolytic enzyme by Thermus thermophilus HB8 and basic characterization","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Thermus thermophilus; Extracellular; Microbial ecology; Enzyme; Thermophile; Biology; Thermus; Biochemistry; Microbiology; Bacteria; Genetics; Escherichia coli; Gene","score_opus":0.009149164081313409,"score_gpt":0.21544301614226274,"score_spread":0.20629385206094933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2779746099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963021,0.00024264977,0.002661163,0.000052247586,0.000006620192,0.00002817323,0.0002220479,0.000036312507,0.000448588],"genre_scores_gemma":[0.9925332,0.0002581343,0.005407441,0.000014797819,0.0000046728755,0.00004588907,0.00072227564,0.00003496928,0.000978586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999808,0.00004109265,0.00002610952,0.000025438278,0.00006538372,0.000033950175],"domain_scores_gemma":[0.9998658,0.00002746902,0.000029340623,0.000017348202,0.000037150166,0.000022903734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023803505,0.000514304,0.00027073742,0.00018283304,0.00013846056,0.00030338037,0.00022989654,0.00020226324,0.0005444706],"category_scores_gemma":[0.00031693993,0.00017400875,0.00022848052,0.00032558478,0.00015193375,0.00021247123,0.00022934549,0.0004183839,0.00026812856],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007027812,0.000043106455,0.00019220363,0.000021464175,0.0000031880104,0.000023197485,0.000015089321,0.00017871764,0.9983146,0.000026561398,0.000014396711,0.0010970876],"study_design_scores_gemma":[0.000006946923,0.00020025217,0.0014682751,0.0000032043356,0.00000792345,0.000046009,0.00002595441,0.0007132748,0.9968226,0.000017905497,0.0006836323,0.0000041546227],"about_ca_topic_score_codex":0.0007724955,"about_ca_topic_score_gemma":0.0007400418,"teacher_disagreement_score":0.0007724955,"about_ca_system_score_codex":0.0001754472,"about_ca_system_score_gemma":0.0001756913,"threshold_uncertainty_score":0.0018213987},"labels":[],"label_agreement":null},{"id":"W2791783240","doi":"10.1007/s00792-018-1015-x","title":"Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fondo de Fomento al Desarrollo Científico y Tecnológico","keywords":"Biology; Phyllosphere; Bacteria; Genome; Microbiology; Botany; Gene; Biochemistry; Genetics","score_opus":0.015579023343720116,"score_gpt":0.238302624276698,"score_spread":0.22272360093297788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791783240","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1689528,0.0071317754,0.012093631,0.0009110447,0.0009039855,0.00040844234,0.8018006,0.0025290851,0.0052686133],"genre_scores_gemma":[0.06260902,0.003490326,0.027231531,0.00026391514,0.0000919517,0.00043885253,0.90264755,0.0005525816,0.002674304],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99946374,0.000060884373,0.00007739662,0.00012882648,0.00017378104,0.000095316915],"domain_scores_gemma":[0.9987908,0.00036724342,0.0002198617,0.0001100572,0.00033189994,0.00018003985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000764252,0.0021762217,0.0016034906,0.0035510866,0.0012886309,0.0019941109,0.0011249352,0.0015601076,0.0061725886],"category_scores_gemma":[0.0027378271,0.00084485376,0.0015706941,0.005465124,0.0004851362,0.000740886,0.00082374905,0.0020209767,0.003985555],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006499149,0.00041996024,0.018589634,0.013721988,0.0011089267,0.003488804,0.004363187,0.0060276557,0.77482533,0.0027354767,0.06525801,0.10296177],"study_design_scores_gemma":[0.0009839085,0.0012186387,0.28032243,0.0032091397,0.0033115235,0.0030832384,0.0042991405,0.007508274,0.103946,0.004357135,0.5873106,0.00044998652],"about_ca_topic_score_codex":0.009862798,"about_ca_topic_score_gemma":0.013092067,"teacher_disagreement_score":0.009862798,"about_ca_system_score_codex":0.0007610592,"about_ca_system_score_gemma":0.0040018056,"threshold_uncertainty_score":0.020649374},"labels":[],"label_agreement":null},{"id":"W2792453656","doi":"10.1007/s00792-017-0988-1","title":"Description of a cryptic thermophilic (pro)phage, CBP1 from Caldibacillus debilis strain GB1","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"University of Manitoba; Genome Canada","keywords":"Biology; Siphoviridae; Genetics; Gene; Lysogenic cycle; Genome; Bacteriophage; ORFS; Open reading frame; Peptide sequence; Escherichia coli","score_opus":0.02552837097379654,"score_gpt":0.23982844023725564,"score_spread":0.2143000692634591,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792453656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901237,0.00096083235,0.0037097812,0.00028334244,0.00006896492,0.00010186388,0.0028903931,0.0000978913,0.0017633134],"genre_scores_gemma":[0.97160286,0.0011460475,0.010829619,0.000115952505,0.000044542136,0.00014425376,0.012620314,0.00007507147,0.003421276],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998392,0.000017044618,0.000019738003,0.0000388821,0.00005158474,0.00003341799],"domain_scores_gemma":[0.999629,0.00007237273,0.00007347352,0.000054436852,0.000069909634,0.0001007227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014280352,0.00062183477,0.0004552295,0.0007035707,0.00036267494,0.00084101636,0.0006281934,0.0006099755,0.0008121093],"category_scores_gemma":[0.00058606366,0.00021065096,0.00035543862,0.00076933875,0.00029747054,0.00040818495,0.00048255917,0.00080061634,0.0005309621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024422206,0.0000733205,0.001725813,0.00015236136,0.000006893492,0.0004916029,0.00012872826,0.00016232138,0.99092126,0.00017425772,0.00014021175,0.005779024],"study_design_scores_gemma":[0.000056420515,0.0010549041,0.07733264,0.000103040875,0.00012941477,0.0059344247,0.0012499938,0.0020946974,0.8953757,0.00048013168,0.016112259,0.00007630703],"about_ca_topic_score_codex":0.0026311122,"about_ca_topic_score_gemma":0.0012088023,"teacher_disagreement_score":0.0026311122,"about_ca_system_score_codex":0.00032302324,"about_ca_system_score_gemma":0.000683292,"threshold_uncertainty_score":0.005231619},"labels":[],"label_agreement":null},{"id":"W2891356545","doi":"10.1007/s00792-018-1053-4","title":"A metabolic and genomic assessment of sugar fermentation profiles of the thermophilic Thermotogales, Fervidobacterium pennivorans","year":2018,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada","keywords":"Cellobiose; Biology; Fermentation; Thermophile; Genome; Metabolic pathway; Biochemistry; Synteny; Strain (injury); Metabolic engineering; Genetics; Whole genome sequencing; Gene; Microbiology; Enzyme; Cellulase","score_opus":0.01341286628824456,"score_gpt":0.25428882183154344,"score_spread":0.24087595554329888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891356545","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99591607,0.00031078845,0.0010257193,0.000046719768,0.0000047213916,0.000017994442,0.0021992517,0.000013409636,0.00046526996],"genre_scores_gemma":[0.9890109,0.00039598136,0.0026560626,0.00004593799,0.000010130898,0.000031861066,0.006778514,0.00001642592,0.0010542447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998622,0.000020214944,0.000011732698,0.00004397088,0.00003491877,0.000026974127],"domain_scores_gemma":[0.99981207,0.000034812878,0.000039249575,0.000019408353,0.000052479627,0.000042132586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013585563,0.00037692953,0.00028033444,0.0006015945,0.00021055034,0.00034457928,0.00013325561,0.00027569936,0.00052260526],"category_scores_gemma":[0.00035015043,0.00015662785,0.00030476958,0.000765954,0.00021427947,0.0002477629,0.00028340254,0.0003537428,0.00019623314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020034009,0.000037645586,0.0023878738,0.000025002624,0.00000897416,0.000031211104,0.00006245641,0.00006576066,0.99482286,0.000024834751,0.000017964836,0.002315112],"study_design_scores_gemma":[0.00002656259,0.001447865,0.38499486,0.0000240667,0.0001697157,0.0008822534,0.00083085167,0.0014081383,0.60710144,0.0001595279,0.002927049,0.000027640064],"about_ca_topic_score_codex":0.0018483256,"about_ca_topic_score_gemma":0.0020088407,"teacher_disagreement_score":0.0018483256,"about_ca_system_score_codex":0.00012643528,"about_ca_system_score_gemma":0.00022655813,"threshold_uncertainty_score":0.0036751628},"labels":[],"label_agreement":null},{"id":"W2910754831","doi":"10.1007/s00792-018-01074-4","title":"Microbial community composition and dolomite formation in the hypersaline microbial mats of the Khor Al-Adaid sabkhas, Qatar","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Paleontology and Stratigraphy of Fossils","field":"Earth and Planetary Sciences","cited_by":62,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Qatar National Research Fund; Canada Foundation for Innovation","keywords":"Microbial mat; Dolomite; Anoxygenic photosynthesis; Geology; Microbial population biology; Carbonate; Anoxic waters; Stromatolite; Cyanobacteria; Sabkha; Salinity; Algal mat; Geochemistry; Ecology; Biology; Evaporite; Oceanography; Paleontology; Algae; Bacteria; Chemistry; Sedimentary rock","score_opus":0.01706194465200472,"score_gpt":0.2112253482879148,"score_spread":0.1941634036359101,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2910754831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99962056,0.00010054985,0.000023143562,0.000010243465,0.0000013303463,0.0000015703979,0.00012935963,6.6959495e-7,0.00011244801],"genre_scores_gemma":[0.9994136,0.00007654456,0.000052132098,0.00001867021,0.000002883485,0.0000026637351,0.00018265033,6.5570447e-7,0.0002501386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99988174,0.000011408201,0.000010892595,0.00003885936,0.000017306556,0.00003980445],"domain_scores_gemma":[0.9999083,0.000008011269,0.000028149263,0.000002431092,0.00003155961,0.000021538579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012375232,0.00023735562,0.00028660859,0.00079463236,0.00077039486,0.00067144766,0.0001607267,0.0002530087,0.00087719207],"category_scores_gemma":[0.00015449105,0.0001994589,0.00018349619,0.00061727746,0.0003983452,0.0002741589,0.00043026946,0.00017098949,0.00016896905],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004303081,0.00007303829,0.85013247,0.00010725147,0.000106419386,0.00031627435,0.0046714093,0.00025441914,0.13641109,0.00012918097,0.00011540636,0.0072526983],"study_design_scores_gemma":[0.0000031355676,0.000084955165,0.9964677,0.0000054017455,0.000013594018,0.000109279,0.0019324729,0.00016061976,0.00095580035,0.00001993317,0.00024314834,0.0000039880447],"about_ca_topic_score_codex":0.031828843,"about_ca_topic_score_gemma":0.045046955,"teacher_disagreement_score":0.031828843,"about_ca_system_score_codex":0.00050918804,"about_ca_system_score_gemma":0.00040661107,"threshold_uncertainty_score":0.0632872},"labels":[],"label_agreement":null},{"id":"W2952811401","doi":"10.1007/s00792-017-0956-9","title":"Genomic insights into temperature-dependent transcriptional responses of Kosmotoga olearia, a deep-biosphere bacterium that can grow from 20 to 79 °C","year":2017,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Island University; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Norges Forskningsråd; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Dartmouth College; Simons Foundation","keywords":"Biosphere; Microbial ecology; Bacteria; Biology; Ecology; Thermophile; Evolutionary biology; Computational biology; Genetics","score_opus":0.016414955517029924,"score_gpt":0.23260340968410523,"score_spread":0.2161884541670753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2952811401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99286824,0.0005995612,0.0017302935,0.00009160941,0.000008819645,0.000014470294,0.0038366956,0.0000731843,0.00077706424],"genre_scores_gemma":[0.9885628,0.0006092022,0.002144307,0.00009401856,0.000008594159,0.00003500034,0.007412997,0.00003987638,0.0010931074],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99993527,0.000006575228,0.0000058856713,0.00002139989,0.00001408975,0.000016821012],"domain_scores_gemma":[0.9998927,0.000019327408,0.00003998893,0.000011178561,0.0000177632,0.00001907493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000062906176,0.00038232762,0.000226843,0.00038580055,0.00014375961,0.00021034306,0.00013423173,0.00021003665,0.00061038166],"category_scores_gemma":[0.00014192658,0.00014330112,0.0003048143,0.0004220112,0.00014611022,0.0002163843,0.00031990092,0.00035544453,0.00035413678],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005892959,0.0000104213,0.0009555037,0.000027247037,0.0000028241698,0.00003994973,0.00002945048,0.0000481554,0.9980736,0.000027552998,0.000017903703,0.0007084778],"study_design_scores_gemma":[0.000020777588,0.00043215576,0.510119,0.000048479276,0.00010385595,0.0008466995,0.00088010664,0.0026569343,0.47733584,0.00055607164,0.006955156,0.000044888795],"about_ca_topic_score_codex":0.00092604116,"about_ca_topic_score_gemma":0.0014059673,"teacher_disagreement_score":0.00092604116,"about_ca_system_score_codex":0.00016658114,"about_ca_system_score_gemma":0.00017754102,"threshold_uncertainty_score":0.002041936},"labels":[],"label_agreement":null},{"id":"W2953875568","doi":"10.1007/s00792-019-01105-8","title":"Purification and biochemical characterization of a novel thermostable and halotolerant subtilisin SAPN, a serine protease from Melghiribacillus thermohalophilus Nari2AT for chitin extraction from crab and shrimp shell by-products","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministère de l'Enseignement Supérieur, de la Recherche, de la Science et de la Technologie","keywords":"PMSF; Chitin; Shrimp; Subtilisin; Biochemistry; Serine protease; Litopenaeus; Biology; Proteases; Portunus trituberculatus; Protease; Chromatography; Chemistry; Enzyme","score_opus":0.009796978017043458,"score_gpt":0.21642727684420382,"score_spread":0.20663029882716036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953875568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98946756,0.00101979,0.0077154036,0.00017899091,0.00002492839,0.00004174409,0.00066861,0.000036234705,0.0008468135],"genre_scores_gemma":[0.9824973,0.0007555669,0.0088497335,0.00007901915,0.000018342012,0.000032738644,0.0040408582,0.000029588975,0.003696919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998864,0.000016590115,0.000012235792,0.0000231902,0.000041116728,0.00002042819],"domain_scores_gemma":[0.9998462,0.000025504862,0.000035550926,0.000017779745,0.000033114928,0.000041859355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018960891,0.00054756645,0.00024918217,0.00019259774,0.00014097232,0.0002646266,0.00015715009,0.00018264173,0.00034077096],"category_scores_gemma":[0.00021054874,0.00015048559,0.00034936264,0.00024005782,0.00016153071,0.00027392033,0.00020837187,0.0004217763,0.00025425118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026303744,0.000014732355,0.00017473687,0.000016515261,0.0000029621076,0.00004106383,0.000013187435,0.00004029779,0.9989316,0.0000153776,0.000013197877,0.00070996385],"study_design_scores_gemma":[0.000009631807,0.00011183567,0.0106092915,0.000004632052,0.000015546084,0.0004926247,0.000039689417,0.00080464256,0.98589665,0.00003731987,0.0019714865,0.0000066811945],"about_ca_topic_score_codex":0.001284658,"about_ca_topic_score_gemma":0.0015106603,"teacher_disagreement_score":0.001284658,"about_ca_system_score_codex":0.00026698777,"about_ca_system_score_gemma":0.00025337999,"threshold_uncertainty_score":0.002554357},"labels":[],"label_agreement":null},{"id":"W2978072747","doi":"10.1007/s00792-019-01135-2","title":"Proto-dolomite formation in microbial consortia dominated by Halomonas strains","year":2019,"lang":"en","type":"article","venue":"Extremophiles","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"University of Toronto Scarborough; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; Kuwait University; University of Toronto; Kuwait Foundation for the Advancement of Sciences","keywords":"Dolomite; Halomonas; Microbial population biology; Extracellular polymeric substance; Sabkha; Microbial ecology; Metagenomics; Microbial mat; Biology; Ecology; Halophile; Microcosm; Environmental chemistry; Mineralogy; Chemistry; Bacteria; Sedimentary rock; Biofilm","score_opus":0.007747099078546422,"score_gpt":0.2130626190013866,"score_spread":0.20531551992284017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978072747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924743,0.00013055679,0.00014689763,0.000013533532,0.000008477237,0.000008657298,0.00015721969,0.0000052998835,0.00028196207],"genre_scores_gemma":[0.998877,0.00011568612,0.0003243681,0.000009921526,0.000005097189,0.0000108001805,0.0003255929,0.0000025835143,0.00032894965],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997454,0.00003343551,0.000020654808,0.00007296255,0.00006281995,0.000064771004],"domain_scores_gemma":[0.99981946,0.000024970917,0.000029870802,0.00001573896,0.00004756137,0.00006244584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002541639,0.00048980623,0.00030171146,0.0005217305,0.00031967412,0.0006030127,0.00025905474,0.0002513406,0.00046352943],"category_scores_gemma":[0.00039482734,0.0001753686,0.00023090949,0.00034693364,0.0002671199,0.00032498257,0.00077424763,0.00027255525,0.00010758711],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038455386,0.000036948495,0.0075493893,0.000033393273,0.0000164253,0.00008777516,0.00008910921,0.00006889991,0.9900266,0.00003429813,0.000017856037,0.0016548655],"study_design_scores_gemma":[0.00009141919,0.0016399766,0.32215047,0.000030860643,0.000118341675,0.00070326775,0.0014687506,0.0022796046,0.66917664,0.00022048851,0.0020833598,0.000037006328],"about_ca_topic_score_codex":0.0014358802,"about_ca_topic_score_gemma":0.0016496322,"teacher_disagreement_score":0.0014358802,"about_ca_system_score_codex":0.00020747914,"about_ca_system_score_gemma":0.0003957821,"threshold_uncertainty_score":0.0028550625},"labels":[],"label_agreement":null},{"id":"W3121921999","doi":"10.1007/s00792-021-01216-1","title":"Selection and re-acclimation of bioprospected acid-tolerant green microalgae suitable for growth at low pH","year":2021,"lang":"en","type":"article","venue":"Extremophiles","topic":"Algal biology and biofuel production","field":"Energy","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"Mitacs","keywords":"Acclimatization; Environmental chemistry; Axenic; Photosynthesis; Botany; Chemistry; Biology","score_opus":0.014907062129330774,"score_gpt":0.22403799944918237,"score_spread":0.2091309373198516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3121921999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964676,0.00013314396,0.00215033,0.00007266821,0.00003214405,0.00007001836,0.0003310215,0.00004145504,0.0007015719],"genre_scores_gemma":[0.98631084,0.00025417583,0.006240894,0.00012732684,0.000013919964,0.00010398836,0.0015941894,0.00006679111,0.0052879043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997582,0.000030234578,0.00003590531,0.000055286855,0.00006814338,0.000052194053],"domain_scores_gemma":[0.9998357,0.000026488253,0.000029827677,0.00003304253,0.00003783045,0.000037191374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026576337,0.00044031045,0.00042454535,0.00019883229,0.00024597897,0.00052067306,0.00032254844,0.00035562165,0.0010087601],"category_scores_gemma":[0.00040325677,0.00017887047,0.0004627317,0.0002996795,0.0001612231,0.0002384096,0.00065985235,0.0004962819,0.00039905193],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004312793,0.000022855102,0.00015016335,0.000009618976,0.0000029435455,0.000026181846,0.000016170197,0.000023668965,0.99893576,0.000012896163,0.000016827,0.0007398203],"study_design_scores_gemma":[0.00001693233,0.000506798,0.0108671505,0.000005610229,0.000034168977,0.00020874421,0.00012967295,0.00067310553,0.98539877,0.00002815473,0.00211545,0.000015369706],"about_ca_topic_score_codex":0.0011397196,"about_ca_topic_score_gemma":0.0019949244,"teacher_disagreement_score":0.0011397196,"about_ca_system_score_codex":0.00019111835,"about_ca_system_score_gemma":0.00022359389,"threshold_uncertainty_score":0.0033745766},"labels":[],"label_agreement":null},{"id":"W4236000868","doi":"10.1007/s00792-002-0281-8","title":"Donn J. Kushner, 1927–2001","year":2002,"lang":"en","type":"article","venue":"Extremophiles","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Faculty of Education, Victoria University of Wellington; University of Ottawa","keywords":"Microbial ecology; Astrobiology; Philosophy; Geography; Geology; Biology; Paleontology","score_opus":0.0207514564382898,"score_gpt":0.22024057279829243,"score_spread":0.19948911636000263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236000868","genre_codex":"review","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028779646,0.64243186,0.013408557,0.109395266,0.08447576,0.00007593455,0.0018161502,0.00056767307,0.14495084],"genre_scores_gemma":[0.017715948,0.20988412,0.005503441,0.009495292,0.015401313,0.00006906621,0.0008366633,0.00034074407,0.7407534],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996728,0.000040438135,0.00002446203,0.00013191301,0.00010592272,0.00002453867],"domain_scores_gemma":[0.99942136,0.00012167461,0.000053247943,0.000039160295,0.00020959227,0.00015504601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010635032,0.00090007955,0.0005181301,0.0014682449,0.00091415545,0.001052909,0.0006874662,0.0013747672,0.05267627],"category_scores_gemma":[0.0016507526,0.00036411683,0.00032278805,0.00075867836,0.0009472097,0.0015448205,0.0012155952,0.003197794,0.04044011],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022787499,0.00002712,0.00059441174,0.00045962265,0.000029563256,0.00032579215,0.00021965704,0.00018340611,0.004036624,0.012350119,0.6818951,0.2996508],"study_design_scores_gemma":[0.0000041508765,0.000008765978,0.00035357344,0.00007137725,0.000005697585,0.0002508017,0.000028072644,0.00003412821,0.0008586392,0.0014808588,0.9968958,0.000008190091],"about_ca_topic_score_codex":0.0033735423,"about_ca_topic_score_gemma":0.007911882,"teacher_disagreement_score":0.05267627,"about_ca_system_score_codex":0.0013326133,"about_ca_system_score_gemma":0.0008824482,"threshold_uncertainty_score":0.1762197},"labels":[],"label_agreement":null},{"id":"W4401806574","doi":"10.1007/s00792-024-01356-0","title":"Genomic signatures of cold adaptation in the family Colwelliaceae","year":2024,"lang":"en","type":"article","venue":"Extremophiles","topic":"Polar Research and Ecology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"North Pacific Research Board; National Oceanic and Atmospheric Administration","keywords":"Biology; Clade; Psychrophile; Comparative genomics; Genetics; Gene; Strain (injury); Phenotype; Adaptation (eye); Genomics; Microbial ecology; Computational biology; Phylogenetics; Genome; Bacteria; Evolutionary biology","score_opus":0.023674936308627704,"score_gpt":0.2519338243492488,"score_spread":0.2282588880406211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401806574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971426,0.0008094597,0.0002354585,0.00004309895,0.000006162965,0.000003609343,0.0010253346,0.000014978583,0.00071920414],"genre_scores_gemma":[0.9980063,0.00018852529,0.00019211549,0.000054594297,0.0000060933826,0.0000065386416,0.0011479813,0.00000898771,0.00038896914],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99990773,0.000010713338,0.000003296331,0.00004096695,0.000011092837,0.000026142072],"domain_scores_gemma":[0.99973637,0.0000672629,0.00007587553,0.000019573312,0.000030515886,0.000070321505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007131632,0.00029891447,0.00029664443,0.00088102295,0.00041012812,0.00038357906,0.00015456502,0.00031831834,0.002346461],"category_scores_gemma":[0.00025914714,0.00010908939,0.00018161714,0.0009856621,0.00030709594,0.00013882939,0.00033314218,0.00031377675,0.0002891501],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011278548,0.000027593604,0.111881614,0.00019228595,0.00013631773,0.00023934821,0.00067789207,0.00020279599,0.872328,0.00027953277,0.00030819356,0.012598563],"study_design_scores_gemma":[0.000014611823,0.000061747065,0.9936335,0.000014737931,0.000037419788,0.00017154713,0.00034747756,0.00013406396,0.0034449277,0.0000918025,0.0020410512,0.0000070372353],"about_ca_topic_score_codex":0.003915722,"about_ca_topic_score_gemma":0.0067278817,"teacher_disagreement_score":0.003915722,"about_ca_system_score_codex":0.00023959044,"about_ca_system_score_gemma":0.0001261412,"threshold_uncertainty_score":0.007849693},"labels":[],"label_agreement":null},{"id":"W4404969300","doi":"10.1007/s00792-024-01370-2","title":"Characterization of a family IV esterase from extremely halophilic archaeon Haloarcula japonica","year":2024,"lang":"en","type":"article","venue":"Extremophiles","topic":"Enzyme Catalysis and Immobilization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Daiichi Sankyo Europe; Dalhousie University; Daiichi-Sankyo; Japan Society for Bioscience, Biotechnology, and Agrochemistry","keywords":"Esterase; Halophile; Japonica; Biochemistry; Homology (biology); Biology; Gene; Glycerol; Hydrolysis; Strain (injury); Enzyme; Chemistry; Genetics; Botany; Bacteria","score_opus":0.01770075567310329,"score_gpt":0.2486813343940139,"score_spread":0.23098057872091063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404969300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99747616,0.0005211285,0.0011463964,0.000043936914,0.000005482692,0.000010138156,0.00046278178,0.000015106944,0.00031894524],"genre_scores_gemma":[0.9911107,0.0005222927,0.004087678,0.00004400875,0.000008950979,0.0000150616315,0.0028671145,0.000016504115,0.0013278153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999349,0.0000063971984,0.0000074949057,0.00001594891,0.000022450038,0.000012787171],"domain_scores_gemma":[0.9998872,0.000013330631,0.00003155133,0.000010843422,0.000023481754,0.000033532448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113131086,0.00029682435,0.0002342095,0.0004106919,0.00012587925,0.0002860705,0.00013519436,0.00019943967,0.0002691633],"category_scores_gemma":[0.00018320736,0.000115589304,0.00026534818,0.00036414512,0.00011680747,0.0001673469,0.00026847952,0.00023356591,0.00019947029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003633962,0.0000096191925,0.0024444363,0.00004417349,0.0000057419325,0.00012900334,0.00003955014,0.000031302792,0.9954158,0.00001748755,0.000014769423,0.0018118377],"study_design_scores_gemma":[0.000020252328,0.00040344475,0.25956556,0.000029060904,0.00010251989,0.0030949456,0.0004589184,0.0014165316,0.7291615,0.00011173178,0.0056041665,0.00003137906],"about_ca_topic_score_codex":0.0012508193,"about_ca_topic_score_gemma":0.0009912971,"teacher_disagreement_score":0.0012508193,"about_ca_system_score_codex":0.00009724542,"about_ca_system_score_gemma":0.00021641524,"threshold_uncertainty_score":0.0024870634},"labels":[],"label_agreement":null},{"id":"W771558484","doi":"10.1007/s00792-015-0761-2","title":"Isolation, characterization, and survival strategies of Thermotoga sp. strain PD524, a hyperthermophile from a hot spring in Northern Thailand","year":2015,"lang":"en","type":"article","venue":"Extremophiles","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Air Force Office of Scientific Research; Silpakorn University; National Aeronautics and Space Administration; National Science Foundation","keywords":"Hyperthermophile; Cellobiose; Strain (injury); Xylose; Thermotoga maritima; Maltose; Arabinose; Biology; 16S ribosomal RNA; Food science; Biochemistry; Sucrose; Fermentation; Gene; Enzyme; Escherichia coli; Cellulase","score_opus":0.02088518412058565,"score_gpt":0.2234623428054434,"score_spread":0.20257715868485773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W771558484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968867,0.00039271457,0.00091463176,0.00010683939,0.0000100017705,0.000043270637,0.0010801855,0.000014201737,0.0005514865],"genre_scores_gemma":[0.9891348,0.0007290233,0.0027612993,0.00006732921,0.000016317974,0.00008079026,0.0048153205,0.000022144832,0.002373063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99975556,0.000035190096,0.000046680474,0.00006625402,0.000047121943,0.000049153565],"domain_scores_gemma":[0.9997185,0.000050781477,0.00006166009,0.00003557375,0.000073845054,0.00005958181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020022794,0.0006423554,0.00037219588,0.0005810911,0.00037525612,0.0006343458,0.00032789115,0.0003938552,0.00037520495],"category_scores_gemma":[0.00038154682,0.0002678286,0.00034592513,0.0008564991,0.00026040906,0.00058246765,0.00057250593,0.00044394872,0.00043289695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010481857,0.000049266448,0.006834349,0.00007338516,0.000010046421,0.00015741317,0.00024279993,0.00008764387,0.98887676,0.00002586033,0.00003514574,0.0035026153],"study_design_scores_gemma":[0.000058889003,0.0019320761,0.2951928,0.00008198313,0.00027509616,0.003901416,0.005881052,0.0023894636,0.6797705,0.0003049166,0.010112894,0.00009892176],"about_ca_topic_score_codex":0.0037372625,"about_ca_topic_score_gemma":0.0028198843,"teacher_disagreement_score":0.0037372625,"about_ca_system_score_codex":0.00018705452,"about_ca_system_score_gemma":0.00045541924,"threshold_uncertainty_score":0.0074310303},"labels":[],"label_agreement":null}]}