{"meta":{"query_hash":"a772e305eeb3","filters":{"venue":"Functional & Integrative Genomics"},"cohort_total":57,"direct_labels_cover":0,"predictions_cover":57,"exported":57,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/a772e305eeb3","api":"https://metacan.xera.ac/api/v1/cohort?venue=Functional+%26+Integrative+Genomics"},"results":[{"id":"W1494126039","doi":"10.1007/s10142-002-0073-3","title":"Advances in cereal functional genomics","year":2003,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Research Council (Canada)","funders":"","keywords":"Biology; Genomics; Functional genomics; Computational biology; Biotechnology; Genome; Genetics; Gene","score_opus":0.03539004062183443,"score_gpt":0.2785060992244946,"score_spread":0.24311605860266017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1494126039","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007955447,0.9788023,0.009387333,0.0011395857,0.0013442413,0.000025659343,0.00009309205,0.00010623216,0.008305968],"genre_scores_gemma":[0.0063282456,0.97739697,0.0085890135,0.0013131237,0.001054622,0.000033912496,0.00029494203,0.000028231856,0.0049610347],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997265,0.00004091982,0.000021059375,0.00008057394,0.00009550342,0.000035419635],"domain_scores_gemma":[0.9996159,0.00017722286,0.000028104743,0.00003752379,0.000102831116,0.00003836963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001823854,0.0013740977,0.0017439075,0.0014383263,0.00044056677,0.0016275884,0.0014431119,0.0013347428,0.0046224766],"category_scores_gemma":[0.0009797221,0.00046668437,0.00054346444,0.0023470803,0.0012876316,0.0021985422,0.0012810273,0.002288757,0.003362599],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100872705,0.00008986129,0.00021455267,0.0046120174,0.00004737431,0.00021341945,0.00010190245,0.00065233366,0.019696105,0.021581054,0.029884307,0.92280614],"study_design_scores_gemma":[0.00002790103,0.00007791869,0.00080471986,0.00063954043,0.000045384644,0.00069598685,0.00004931886,0.00029000817,0.003575689,0.008647331,0.9851238,0.000022444778],"about_ca_topic_score_codex":0.0016569172,"about_ca_topic_score_gemma":0.0015002849,"teacher_disagreement_score":0.0046224766,"about_ca_system_score_codex":0.0011973549,"about_ca_system_score_gemma":0.0012029627,"threshold_uncertainty_score":0.015463769},"labels":[],"label_agreement":null},{"id":"W1965281170","doi":"10.1007/s10142-012-0280-5","title":"Auxin and ABA act as central regulators of developmental networks associated with paradormancy in Canada thistle (Cirsium arvense)","year":2012,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Natural Resources Conservation Service","keywords":"Thistle; Biology; Auxin; Abscisic acid; Gibberellin; Gibberellic acid; Arabidopsis; Botany; Apical dominance; Plant hormone; Shoot; Germination; Genetics; Gene","score_opus":0.013415717016398519,"score_gpt":0.18969895853449759,"score_spread":0.17628324151809907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965281170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976115,0.0005017668,0.0006924901,0.00006531815,0.000008898356,0.000009457375,0.00032085448,0.000056247118,0.000733422],"genre_scores_gemma":[0.9974849,0.00012148184,0.00038076055,0.000052950556,0.000002662799,0.000011017435,0.0005687352,0.00002138009,0.001356105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999236,0.0000060077673,0.000004277716,0.000028409893,0.000014415624,0.000023241211],"domain_scores_gemma":[0.99976486,0.000035537392,0.00006436972,0.000015672915,0.0000472159,0.00007242634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010162789,0.00023611936,0.00022227623,0.000379473,0.00050696806,0.0004012813,0.00038371095,0.00018946415,0.00060758786],"category_scores_gemma":[0.00010560918,0.0002438333,0.0001744267,0.0002323124,0.00034294426,0.00032483015,0.00038211464,0.00042599888,0.00011033645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019590608,0.000013589073,0.003201944,0.00002070664,0.000006117679,0.000054606833,0.00006537097,0.00009484835,0.9951994,0.00015183444,0.00004343642,0.0009521694],"study_design_scores_gemma":[0.00009771527,0.00024796434,0.6695007,0.000009798761,0.00007158867,0.0002920741,0.00054129463,0.0034510859,0.32294846,0.0003423411,0.0024557523,0.000041237647],"about_ca_topic_score_codex":0.0378147,"about_ca_topic_score_gemma":0.08945695,"teacher_disagreement_score":0.0378147,"about_ca_system_score_codex":0.0010871709,"about_ca_system_score_gemma":0.00053090637,"threshold_uncertainty_score":0.07518917},"labels":[],"label_agreement":null},{"id":"W1966809966","doi":"10.1007/s10142-013-0320-9","title":"Esophageal cancer alters the expression of nuclear pore complex binding protein Hsc70 and eIF5A-1","year":2013,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Nuclear Structure and Function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Nucleoporin; Nuclear pore; Biology; Cell biology; Nuclear transport; Cytoplasm; Protein subunit; Nuclear protein; Chaperone (clinical); Cell nucleus; Prohibitin; Transport protein; Carcinogenesis; Genetics; Gene; Transcription factor","score_opus":0.012272186352313832,"score_gpt":0.2274829141567609,"score_spread":0.21521072780444706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966809966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980434,0.0007179332,0.0003757818,0.00007850918,0.00003057385,0.0000031455822,0.00018307731,0.000029756437,0.0005377999],"genre_scores_gemma":[0.9979931,0.00019487385,0.00013173431,0.000028828612,0.0000028522504,0.000003805796,0.00023987157,0.000008599598,0.0013962127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998869,0.000017497814,0.000008369752,0.000024666107,0.00002385665,0.00003878825],"domain_scores_gemma":[0.99991035,0.000012228621,0.00003012028,0.0000097234515,0.0000087777735,0.000028705117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008555274,0.0001929098,0.0001845604,0.00021487524,0.00015946486,0.00033616112,0.00011856877,0.00025858442,0.0017794025],"category_scores_gemma":[0.00014684476,0.00018328705,0.00021492975,0.00017608576,0.00022994478,0.00018665972,0.0001578272,0.00035912567,0.00026162073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005697062,0.000021838361,0.0011451244,0.000020784762,0.000012662528,0.000078875055,0.000018107696,0.00005903183,0.9969355,0.00012878842,0.00007937278,0.00093016215],"study_design_scores_gemma":[0.000052949003,0.0003730951,0.09811238,0.0000071612703,0.00007693726,0.0006115845,0.00023357026,0.0014015312,0.895308,0.00013162482,0.0036798294,0.000011313516],"about_ca_topic_score_codex":0.0011683672,"about_ca_topic_score_gemma":0.0010848674,"teacher_disagreement_score":0.0017794025,"about_ca_system_score_codex":0.0003641708,"about_ca_system_score_gemma":0.00020435447,"threshold_uncertainty_score":0.005952716},"labels":[],"label_agreement":null},{"id":"W1972857806","doi":"10.1007/s10142-003-0086-6","title":"Integrated analysis of yeast regulatory sequences for biologically linked clusters of genes","year":2003,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Saccharomyces cerevisiae; Computational biology; DNA binding site; Transcription factor; Genetics; Regulon; Gene; Regulatory sequence; Cis-regulatory module; DNA sequencing; Promoter; Gene expression; Enhancer","score_opus":0.03011690085369938,"score_gpt":0.27802848497036975,"score_spread":0.24791158411667036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972857806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9612389,0.0012498865,0.032760676,0.00009367526,0.00004406205,0.00016411273,0.0020752512,0.00043278377,0.0019405207],"genre_scores_gemma":[0.9559772,0.0004639137,0.0326018,0.00012235952,0.00002161018,0.00012272634,0.008789865,0.00026437215,0.0016361485],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99967384,0.000044051147,0.000021868294,0.0001155665,0.00008080671,0.0000637692],"domain_scores_gemma":[0.9993024,0.00028417833,0.00011861677,0.00006503092,0.00009662099,0.00013308288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048069228,0.0006635617,0.0006045711,0.001099576,0.00042914218,0.0006316424,0.0007408268,0.0004552573,0.0018624372],"category_scores_gemma":[0.0005705933,0.00046703723,0.00088155956,0.00072688505,0.00051181257,0.00028058418,0.00055055204,0.0015133576,0.0007251723],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068024435,0.000074247866,0.00030471073,0.000061005707,0.000015143119,0.000050958908,0.00003737432,0.00045341757,0.9954224,0.0003804376,0.00004045905,0.0024794661],"study_design_scores_gemma":[0.0001591489,0.00030571324,0.010925568,0.000032859087,0.00014831791,0.00024696055,0.00010993832,0.00661583,0.97789586,0.0005038374,0.0030287178,0.000027229686],"about_ca_topic_score_codex":0.002301148,"about_ca_topic_score_gemma":0.0055630044,"teacher_disagreement_score":0.002301148,"about_ca_system_score_codex":0.0009475536,"about_ca_system_score_gemma":0.00082044903,"threshold_uncertainty_score":0.0068749785},"labels":[],"label_agreement":null},{"id":"W1979627115","doi":"10.1007/s10142-011-0258-8","title":"Mutagenesis of barley malting quality QTLs with Ds transposons","year":2011,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genetics; Quantitative trait locus; Transposable element; Genome; Gene; Hordeum vulgare; Computational biology; Botany; Poaceae","score_opus":0.06025453452998471,"score_gpt":0.2232615103775366,"score_spread":0.16300697584755192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979627115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97340447,0.0002842002,0.021540044,0.00025309736,0.00014628466,0.0002151121,0.001357998,0.00043467598,0.0023640634],"genre_scores_gemma":[0.98624855,0.00020889354,0.005176035,0.000122218,0.000014908112,0.00008324931,0.0010057109,0.00040622868,0.0067342105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99951065,0.0001035706,0.0000765174,0.00013684167,0.00009034467,0.00008216818],"domain_scores_gemma":[0.9995484,0.00017143598,0.000109187196,0.00005827322,0.000028426846,0.000084272724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030499484,0.0011034239,0.0005723406,0.0007509728,0.00033061855,0.00037946197,0.00079998333,0.0005914106,0.0043114647],"category_scores_gemma":[0.00042305194,0.00055775273,0.0008169498,0.00058651937,0.00069535273,0.00019676432,0.0007442488,0.0015216715,0.000801202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001233962,0.000020625997,0.00009596386,0.000024940542,0.000011552903,0.000057668247,0.00003051894,0.0000940305,0.9986871,0.00013233228,0.000017590859,0.00070442015],"study_design_scores_gemma":[0.00007780499,0.00013914808,0.004453824,0.000010588468,0.000079878824,0.0003187751,0.00009155716,0.0012758423,0.99062645,0.00008267518,0.002818,0.000025509242],"about_ca_topic_score_codex":0.0059143873,"about_ca_topic_score_gemma":0.007827927,"teacher_disagreement_score":0.0059143873,"about_ca_system_score_codex":0.0010783061,"about_ca_system_score_gemma":0.00055215467,"threshold_uncertainty_score":0.014423311},"labels":[],"label_agreement":null},{"id":"W1980822498","doi":"10.1007/s10142-015-0439-y","title":"Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress","year":2015,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Genome Alberta; National Natural Science Foundation of China","keywords":"Biology; Transcriptome; Glycine soja; WRKY protein domain; Gene; Gene expression; Transcription factor; Genetics; RNA-Seq; Biochemistry; Glycine","score_opus":0.04043350981943332,"score_gpt":0.2286301733233723,"score_spread":0.188196663503939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980822498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99517894,0.00073637685,0.0019913362,0.0001061977,0.000026502828,0.000013064889,0.0008207008,0.00013540342,0.0009915055],"genre_scores_gemma":[0.9909251,0.00027072107,0.001445854,0.000090782654,0.000008636528,0.000025522893,0.0026467578,0.00009788069,0.0044886894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998159,0.000009010054,0.000009118314,0.000075740136,0.000038525526,0.000051770716],"domain_scores_gemma":[0.9997626,0.00004230294,0.00006479158,0.000031976335,0.000033941484,0.00006437418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012030718,0.00057912024,0.00037887352,0.00026454084,0.0002111589,0.00033638885,0.00028947697,0.00024142377,0.0018040369],"category_scores_gemma":[0.00014233682,0.0004061493,0.00029130618,0.00015737202,0.00034955554,0.00033620963,0.00036160607,0.00059821364,0.0004904493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006469757,0.000005224019,0.00028753938,0.000008791441,0.0000013223577,0.000013637048,0.0000074273917,0.0000068100853,0.9993311,0.000027589582,0.000014443043,0.00023153982],"study_design_scores_gemma":[0.000055411696,0.00016337272,0.12471494,0.000010123771,0.0000514077,0.00050668,0.00021949195,0.0016055902,0.8701537,0.00023246177,0.002267265,0.000019563457],"about_ca_topic_score_codex":0.0030536782,"about_ca_topic_score_gemma":0.0071123685,"teacher_disagreement_score":0.0030536782,"about_ca_system_score_codex":0.00068187,"about_ca_system_score_gemma":0.00027629329,"threshold_uncertainty_score":0.006071806},"labels":[],"label_agreement":null},{"id":"W1988699245","doi":"10.1007/s10142-012-0273-4","title":"Identification of mitochondrial thiamin diphosphate carriers from Arabidopsis and maize","year":2012,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Metabolism and Genetic Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dell'Università e della Ricerca; University of Guelph; National Science Foundation","keywords":"Biology; Arabidopsis; Mitochondrion; Chloroplast; Saccharomyces cerevisiae; Biochemistry; Plastid; Arabidopsis thaliana; Subcellular localization; Cytosol; Cofactor; Genome; Enzyme; Cell biology; Genetics; Gene; Mutant","score_opus":0.0074070436269329755,"score_gpt":0.2212251434431172,"score_spread":0.21381809981618422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988699245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929919,0.00086187053,0.003638214,0.00013599641,0.00001615668,0.000035031313,0.0014506056,0.000048312744,0.0008220442],"genre_scores_gemma":[0.98565024,0.00082282466,0.0044622608,0.00008004112,0.000012828363,0.00002919105,0.0065261787,0.000047534093,0.0023689407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993265,0.000005171959,0.000008151016,0.000021752303,0.000015375053,0.000016917107],"domain_scores_gemma":[0.9997265,0.00007018341,0.000075413074,0.00003008839,0.000034654222,0.00006310362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001464454,0.00036979845,0.00034443132,0.0006095751,0.0003083966,0.00047068394,0.0003402994,0.00046452464,0.0007587243],"category_scores_gemma":[0.0003615928,0.00022077218,0.00041028296,0.0004633194,0.0002449992,0.00041749462,0.00037910292,0.0004894837,0.00032383914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018294093,0.00000557149,0.0003446091,0.000027886212,0.000004919463,0.00008071974,0.000061481594,0.00004036817,0.9980059,0.00027918848,0.000016181437,0.00095027476],"study_design_scores_gemma":[0.00010973453,0.00027393908,0.07139695,0.000020448846,0.00014111925,0.002076896,0.0005189903,0.00148859,0.90972275,0.0010885976,0.0131062595,0.000055767534],"about_ca_topic_score_codex":0.00485955,"about_ca_topic_score_gemma":0.0042958395,"teacher_disagreement_score":0.00485955,"about_ca_system_score_codex":0.00063724467,"about_ca_system_score_gemma":0.00035027775,"threshold_uncertainty_score":0.009662509},"labels":[],"label_agreement":null},{"id":"W1989927211","doi":"10.1007/s10142-006-0030-7","title":"Identification of quantitative trait loci and associated candidate genes for low-temperature tolerance in cold-hardy winter wheat","year":2006,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":163,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Quantitative trait locus; Vernalization; Genetics; Doubled haploidy; Locus (genetics); Population; Allele; Gene; Chromosome","score_opus":0.013553854039610179,"score_gpt":0.2259110358543263,"score_spread":0.2123571818147161,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989927211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805117,0.00012517384,0.001397459,0.00002755372,0.000005066544,0.0000063252546,0.00025914,0.000014255432,0.00011373994],"genre_scores_gemma":[0.99724555,0.00006561272,0.0014394756,0.000032627162,0.000007072334,0.000012465704,0.0006354338,0.0000142146955,0.00054760824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99992275,0.000008224012,0.0000065020636,0.00003299181,0.000013882423,0.00001558515],"domain_scores_gemma":[0.99974424,0.00007526677,0.000057039368,0.000013139889,0.00003063428,0.00007962631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020559161,0.00026773897,0.0003506722,0.0007126681,0.00022901292,0.0003347589,0.000254328,0.00019665158,0.0006539137],"category_scores_gemma":[0.00021520269,0.00019020392,0.0002927224,0.00034140894,0.00023447249,0.00015425745,0.00019775024,0.00040219567,0.000113762966],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037727066,0.000030211613,0.00622882,0.000029471881,0.000015669799,0.00006874017,0.000070223345,0.000087792156,0.9910677,0.00009763167,0.000028047592,0.0018984587],"study_design_scores_gemma":[0.00014224724,0.00035702117,0.844948,0.000010552359,0.0001232418,0.00063146005,0.00027074997,0.003850352,0.1483382,0.0004464874,0.0008484139,0.000033364944],"about_ca_topic_score_codex":0.002815013,"about_ca_topic_score_gemma":0.0036348624,"teacher_disagreement_score":0.002815013,"about_ca_system_score_codex":0.0003232953,"about_ca_system_score_gemma":0.00018237981,"threshold_uncertainty_score":0.005597234},"labels":[],"label_agreement":null},{"id":"W1990789367","doi":"10.1007/s10142-013-0316-5","title":"Induction of annexin by heavy metals and jasmonic acid in Zea mays","year":2013,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"S100 Proteins and Annexins","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"Central South University","keywords":"Jasmonic acid; Biology; Gene; Annexin; Annexin A2; Genetics; Gene expression","score_opus":0.010335410327618484,"score_gpt":0.21970706967246417,"score_spread":0.2093716593448457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990789367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956756,0.00053975283,0.0017017428,0.00014313844,0.000018496015,0.000020761625,0.00087104266,0.0001285977,0.0009007647],"genre_scores_gemma":[0.99167097,0.00024678413,0.0010279104,0.00006978832,0.000005489559,0.000024461377,0.0014732169,0.000042517047,0.0054390146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998691,0.000017536193,0.000012492218,0.000029888784,0.000031424755,0.00003945274],"domain_scores_gemma":[0.99981385,0.000043328382,0.000047636953,0.00002614246,0.000021532827,0.000047467893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113006994,0.00038713886,0.00048796242,0.00050050183,0.0002667585,0.0003082787,0.0004137651,0.00042308867,0.0008035157],"category_scores_gemma":[0.0001096093,0.0003610651,0.00047772584,0.00043235178,0.00023905626,0.00036879507,0.00052635215,0.0007489206,0.00039249109],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000091892085,0.000009344733,0.000105510335,0.000011422894,0.0000023729503,0.000022867574,0.000011542926,0.000038799208,0.9994456,0.00006696918,0.000007882222,0.00018574168],"study_design_scores_gemma":[0.00004761252,0.00026349368,0.021504417,0.0000054398206,0.00002661961,0.00014940432,0.00012976314,0.0019766279,0.97273797,0.00023384712,0.0029054729,0.000019208506],"about_ca_topic_score_codex":0.0055826246,"about_ca_topic_score_gemma":0.0048548114,"teacher_disagreement_score":0.0055826246,"about_ca_system_score_codex":0.0011470021,"about_ca_system_score_gemma":0.00030458657,"threshold_uncertainty_score":0.011100292},"labels":[],"label_agreement":null},{"id":"W1998327783","doi":"10.1007/s10142-007-0053-8","title":"Fine mapping of the region on wheat chromosome 7D controlling grain weight","year":2007,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Chromosome; Genetics; Agronomy; Computational biology; Evolutionary biology; Gene","score_opus":0.025790036691343728,"score_gpt":0.21117472315606187,"score_spread":0.18538468646471815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998327783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824368,0.0007925363,0.008913709,0.00020145433,0.00005961621,0.000052740124,0.0018540135,0.00014859822,0.0055405856],"genre_scores_gemma":[0.98862946,0.00018722708,0.004484146,0.00014695483,0.000016004999,0.000030298379,0.0028675783,0.00006002931,0.003578286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998734,0.0000093400895,0.000006390592,0.000055379038,0.00003414235,0.000021283617],"domain_scores_gemma":[0.9997528,0.000097950164,0.000047048485,0.00002728908,0.000023088513,0.000051792584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011412804,0.00027629407,0.00028469105,0.0006497673,0.00032844773,0.00025056966,0.0005032377,0.0003891868,0.0031439594],"category_scores_gemma":[0.00021383616,0.00031965037,0.0003830489,0.00024918834,0.00036630817,0.00009587587,0.00040016833,0.0006282557,0.0011135129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011001035,0.000036930327,0.00059553725,0.000024066572,0.000009343133,0.00012397504,0.000031473945,0.000092891285,0.99612397,0.00024121224,0.00009083973,0.0025197368],"study_design_scores_gemma":[0.00024636203,0.00042768105,0.17287934,0.00004591405,0.00014111603,0.0024650728,0.00026360602,0.0033056368,0.8040298,0.001073671,0.015087858,0.00003396702],"about_ca_topic_score_codex":0.002818537,"about_ca_topic_score_gemma":0.0055379425,"teacher_disagreement_score":0.0031439594,"about_ca_system_score_codex":0.00041503497,"about_ca_system_score_gemma":0.00029412255,"threshold_uncertainty_score":0.010517597},"labels":[],"label_agreement":null},{"id":"W1998859823","doi":"10.1007/s10142-002-0076-0","title":"Reverse genetics by fast neutron mutagenesis in higher plants","year":2002,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Plant Genetic and Mutation Studies","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Mutagenesis; Biology; Reverse genetics; Mutagen; Genetics; Mutant; Forward genetics; Genetic screen; Arabidopsis; Gene; Ethyl methanesulfonate; Mutation; Computational biology; DNA","score_opus":0.09579246755883251,"score_gpt":0.2659550336190369,"score_spread":0.17016256606020436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998859823","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005180168,0.9643685,0.023536947,0.00036480153,0.0006229073,0.00004836494,0.00011600928,0.00023813483,0.005524084],"genre_scores_gemma":[0.012387742,0.96904904,0.0118464455,0.0003884981,0.00015998718,0.000049844362,0.0002875518,0.00003612582,0.005794722],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998241,0.00002165453,0.000020276442,0.000048991165,0.00007168175,0.000013359862],"domain_scores_gemma":[0.99980146,0.00009496046,0.000027260545,0.000020703455,0.00004480736,0.000010789083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007265803,0.0010559567,0.0014792926,0.0010337683,0.00017890544,0.00058562565,0.0010084565,0.0009144128,0.0012472692],"category_scores_gemma":[0.00036704837,0.00030729012,0.00036048572,0.0009400267,0.00054352044,0.00067966536,0.0003344587,0.001191616,0.0017489318],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013401339,0.000097366275,0.00019927359,0.006210114,0.0000625054,0.0004323393,0.00006164413,0.0008341784,0.1729208,0.0049989237,0.0057978304,0.808251],"study_design_scores_gemma":[0.00006742195,0.00026783545,0.0014839219,0.0006124588,0.00027479508,0.004137817,0.00004622094,0.0005702718,0.1405074,0.0028295096,0.84914404,0.000058251986],"about_ca_topic_score_codex":0.00090440107,"about_ca_topic_score_gemma":0.0011115866,"teacher_disagreement_score":0.0014792926,"about_ca_system_score_codex":0.0005247594,"about_ca_system_score_gemma":0.00049159763,"threshold_uncertainty_score":0.004172504},"labels":[],"label_agreement":null},{"id":"W1999677527","doi":"10.1007/s10142-004-0129-7","title":"Looking through genomics?from the editors","year":2004,"lang":"en","type":"editorial","venue":"Functional & Integrative Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Department of Environment and Conservation","funders":"","keywords":"Biology; Genomics; Computational biology; Data science; Genome; Computer science; Genetics; Gene","score_opus":0.010117296899970265,"score_gpt":0.23804087049294687,"score_spread":0.2279235735929766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999677527","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020496342,0.010437316,0.00010504074,0.053438455,0.9349667,0.000009430596,0.000018395629,0.000028286784,0.00097588287],"genre_scores_gemma":[0.00037018288,0.007454599,0.00011966589,0.051358957,0.93088794,0.000023715336,0.000019606066,0.000039946746,0.009725504],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9941518,0.0013873341,0.0007365519,0.0007320916,0.0025920135,0.0004002543],"domain_scores_gemma":[0.9727979,0.010079365,0.0013782298,0.0007727605,0.010514399,0.004457296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01194941,0.0044888,0.005371493,0.004228446,0.0036215065,0.010693945,0.004335107,0.014702017,0.0108951675],"category_scores_gemma":[0.026116028,0.0015436528,0.0023044443,0.001705798,0.0038074935,0.007326384,0.0025612814,0.028840767,0.007988184],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034299395,0.000008783531,0.00001729955,0.00013979006,0.000015600623,0.00007433901,0.000018031109,0.000021373911,0.00004425847,0.000424936,0.99461526,0.0045859995],"study_design_scores_gemma":[0.000048049205,0.000022507113,0.00013747286,0.00039651335,0.00004775237,0.00018637808,0.000060794595,0.000081792234,0.00007171658,0.0010450253,0.99787855,0.000023406305],"about_ca_topic_score_codex":0.0020649033,"about_ca_topic_score_gemma":0.0057367785,"teacher_disagreement_score":0.014702017,"about_ca_system_score_codex":0.0030237152,"about_ca_system_score_gemma":0.0032929278,"threshold_uncertainty_score":0.06319523},"labels":[],"label_agreement":null},{"id":"W2000977576","doi":"10.1007/s10142-005-0009-9","title":"Transient expression and insertional mutagenesis of Puccinia triticina using biolistics","year":2005,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"University of Kansas","keywords":"Biology; Urediniospore; Insertional mutagenesis; Gene; Genetics; Promoter; Heterologous expression; Plasmid; Transformation (genetics); Virulence; Botany; Molecular biology; Gene expression; Genome; Recombinant DNA; Germination","score_opus":0.021549030165183437,"score_gpt":0.2484091476025439,"score_spread":0.22686011743736045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000977576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8288483,0.0024358402,0.14720051,0.00110567,0.0005804385,0.0017462755,0.005549416,0.0028303612,0.009703233],"genre_scores_gemma":[0.8642121,0.001982192,0.08926795,0.00037261055,0.00007419958,0.0013318359,0.01768923,0.001072458,0.02399742],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924517,0.00019210375,0.00010051871,0.00017737522,0.00017578923,0.00010907176],"domain_scores_gemma":[0.99959844,0.0001046256,0.00009136222,0.00009574561,0.000039342587,0.000070440205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000701435,0.0010147333,0.00066403835,0.0008452184,0.00075275893,0.00065651577,0.0011781624,0.000826989,0.0017558861],"category_scores_gemma":[0.00053013954,0.0006420867,0.00073395955,0.0011067141,0.00068638235,0.00053185655,0.00090674846,0.0027320553,0.0012561794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077798795,0.000042912077,0.00004512605,0.00005385723,0.0000066897437,0.000050537525,0.00007115653,0.000053335163,0.997912,0.00035820514,0.00008663709,0.0012417928],"study_design_scores_gemma":[0.000027428208,0.00012596321,0.00077213126,0.000008407197,0.000025634969,0.00020086292,0.000033108532,0.00082626456,0.9912288,0.00012059322,0.0066187456,0.000012000268],"about_ca_topic_score_codex":0.0009017612,"about_ca_topic_score_gemma":0.0011524261,"teacher_disagreement_score":0.0017558861,"about_ca_system_score_codex":0.0007168934,"about_ca_system_score_gemma":0.00044929725,"threshold_uncertainty_score":0.0058740377},"labels":[],"label_agreement":null},{"id":"W2003255960","doi":"10.1007/s10142-008-0095-6","title":"Plasticity of a key metabolic pathway in fungi","year":2008,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; Genome Canada","keywords":"Peroxisome; Biology; Neurospora crassa; Metabolic pathway; Mitochondrion; Enzyme; In silico; Ascomycota; Computational biology; Biochemistry; Genetics; Gene; Mutant","score_opus":0.02759606608376282,"score_gpt":0.2708702864130401,"score_spread":0.2432742203292773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003255960","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013869561,0.9941017,0.0016552786,0.00031244673,0.00027309143,0.0000053114168,0.000038839466,0.000029684034,0.0021966586],"genre_scores_gemma":[0.0061163073,0.99067515,0.001285184,0.00022613174,0.00026150487,0.0000074920936,0.000081577324,0.000003921675,0.0013428441],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998832,0.000010736794,0.0000128115435,0.000043337954,0.000035651923,0.000014368664],"domain_scores_gemma":[0.9998841,0.000033690085,0.00002679642,0.000009738973,0.00002636898,0.00001923411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035857284,0.00082298566,0.0011256062,0.0010675738,0.0002628719,0.0012775948,0.001060252,0.0009513792,0.0013805039],"category_scores_gemma":[0.0002515319,0.00031099602,0.0003205937,0.0015937346,0.0008156862,0.0013306793,0.00063451176,0.0010237352,0.0011771662],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016389572,0.000033084692,0.00024517698,0.006506114,0.000048108708,0.0005425723,0.000051224644,0.0009512575,0.06080422,0.009777928,0.0061145895,0.9147619],"study_design_scores_gemma":[0.000034513483,0.000119909244,0.0023749564,0.00087970326,0.000113324335,0.0034252168,0.00008198394,0.00033627395,0.013359054,0.009005924,0.97023016,0.000038900445],"about_ca_topic_score_codex":0.0007688309,"about_ca_topic_score_gemma":0.0011159489,"teacher_disagreement_score":0.0013805039,"about_ca_system_score_codex":0.0007137552,"about_ca_system_score_gemma":0.00065877027,"threshold_uncertainty_score":0.0051786304},"labels":[],"label_agreement":null},{"id":"W2006044129","doi":"10.1007/s101420000014","title":"ES cell neural differentiation reveals a substantial number of novel ESTs","year":2000,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Pluripotent Stem Cells Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"University of Calgary","keywords":"Biology; Expressed sequence tag; Suppression subtractive hybridization; cDNA library; Complementary DNA; Gene; Neural cell; Embryonic stem cell; Genetics; Genome; Neural stem cell; Cellular differentiation; Computational biology; Stem cell; Cell","score_opus":0.017650881758153412,"score_gpt":0.26684283501029177,"score_spread":0.24919195325213836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006044129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95535105,0.0026544246,0.022323834,0.0002722011,0.00011779785,0.0000465798,0.009180247,0.0004005501,0.009653387],"genre_scores_gemma":[0.8986032,0.0028150487,0.019938856,0.00046470406,0.00012855994,0.00014164676,0.050252546,0.0003777416,0.027277714],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998343,0.000008115855,0.00001905758,0.00005283992,0.00005261635,0.00003306575],"domain_scores_gemma":[0.9994191,0.00020636934,0.000092244714,0.00007939723,0.00008881881,0.00011423055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019789944,0.00067884324,0.00061084377,0.0006773217,0.00034549323,0.00084506784,0.00025427176,0.00056253106,0.0032405034],"category_scores_gemma":[0.00031691877,0.0003594545,0.0006665032,0.0005926583,0.00027776894,0.00040552777,0.0005943607,0.0011583368,0.0035870366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010104831,0.000022673023,0.0006446352,0.000034860597,0.000013758245,0.00021798121,0.000030802363,0.00009482032,0.9957996,0.00013432276,0.000082864026,0.0028226548],"study_design_scores_gemma":[0.0000432461,0.00024832287,0.109385684,0.00004289552,0.00020439965,0.0033408708,0.00018935166,0.0017142786,0.8641945,0.00075563753,0.019837104,0.000043711574],"about_ca_topic_score_codex":0.0004490872,"about_ca_topic_score_gemma":0.0010011856,"teacher_disagreement_score":0.0032405034,"about_ca_system_score_codex":0.00028204967,"about_ca_system_score_gemma":0.00026086878,"threshold_uncertainty_score":0.010840535},"labels":[],"label_agreement":null},{"id":"W2006824843","doi":"10.1007/s10142-013-0315-6","title":"Nicotianamine synthase gene family as central components in heavy metal and phytohormone response in maize","year":2013,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Gene; Arabidopsis; Gene expression; Jasmonic acid; Abscisic acid; Microarray analysis techniques; Phylogenetic tree; Genetics; Biochemistry; Mutant","score_opus":0.023014769247651726,"score_gpt":0.20847053884202552,"score_spread":0.1854557695943738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006824843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654096,0.0006141551,0.0016703367,0.00004605548,0.000008530188,0.00001060042,0.00041699916,0.000027500144,0.00066476135],"genre_scores_gemma":[0.9950205,0.00021636704,0.0011459988,0.000037422487,0.0000038787944,0.000014370324,0.0011513463,0.000015046677,0.002394988],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999448,0.000004973429,0.0000030721458,0.000024093195,0.0000127219655,0.0000102943895],"domain_scores_gemma":[0.9999348,0.000010194809,0.00001941618,0.00000510861,0.000008483434,0.000021949105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008217125,0.00021495228,0.000186227,0.0002526712,0.00023425976,0.00021881277,0.00022010675,0.00016120666,0.00056396524],"category_scores_gemma":[0.00006357097,0.00016742796,0.00027131962,0.00016785412,0.00017075014,0.0001728156,0.00019145868,0.00028709896,0.00018025885],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016360277,0.000007322901,0.00055826036,0.000014310892,0.0000033434821,0.000028431119,0.000030463532,0.00004499124,0.99816966,0.00024991616,0.000018964529,0.00071073364],"study_design_scores_gemma":[0.000076004,0.00019120982,0.25964832,0.000020681486,0.00012426158,0.0007104171,0.0002712492,0.0041701565,0.7251351,0.0011404173,0.008481787,0.000030381585],"about_ca_topic_score_codex":0.0031264918,"about_ca_topic_score_gemma":0.004278816,"teacher_disagreement_score":0.0031264918,"about_ca_system_score_codex":0.00046680425,"about_ca_system_score_gemma":0.0002897647,"threshold_uncertainty_score":0.0062165856},"labels":[],"label_agreement":null},{"id":"W2006919759","doi":"10.1007/s10142-013-0329-0","title":"Decreased defense gene expression in tolerance versus resistance to Verticillium dahliae in potato","year":2013,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Verticillium dahliae; Biology; WRKY protein domain; Verticillium wilt; Gene; Plant disease resistance; Chlorosis; Verticillium; Genetics; Gene expression; Microbiology; Botany; Transcriptome","score_opus":0.02445893665268795,"score_gpt":0.22473715256457374,"score_spread":0.2002782159118858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006919759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990232,0.00022229705,0.00033719375,0.000031237545,0.0000039225692,0.0000025818747,0.00019186319,0.0000127151625,0.00017506248],"genre_scores_gemma":[0.9982186,0.00012104735,0.00020624256,0.000032614953,0.000003168156,0.000007844956,0.0003958494,0.000010510885,0.0010039317],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989665,0.000013206005,0.000008500376,0.00005072344,0.0000116237115,0.000019316096],"domain_scores_gemma":[0.99984527,0.00003649388,0.000042234642,0.000012201801,0.000015352933,0.000048419115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102505015,0.0001791236,0.00025248266,0.00029853167,0.00013552285,0.00028844306,0.00014406754,0.00031182286,0.0008873999],"category_scores_gemma":[0.00013728315,0.00021272706,0.00020105169,0.00021151798,0.00020998798,0.00016086885,0.00016864005,0.00050335046,0.00015512106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016849565,0.0000067190194,0.00056453183,0.000011480956,0.0000034152124,0.000030274556,0.000019076158,0.000023802531,0.9989058,0.000017563158,0.000007765775,0.00024109293],"study_design_scores_gemma":[0.00009631857,0.0007731178,0.38656035,0.000018141338,0.00012484868,0.0013511347,0.00055748824,0.0019605085,0.60706836,0.00024879424,0.0012175079,0.000023387542],"about_ca_topic_score_codex":0.00083399133,"about_ca_topic_score_gemma":0.00075270195,"teacher_disagreement_score":0.0008873999,"about_ca_system_score_codex":0.00023990245,"about_ca_system_score_gemma":0.000116568124,"threshold_uncertainty_score":0.0029686093},"labels":[],"label_agreement":null},{"id":"W2008699060","doi":"10.1007/s10142-011-0223-6","title":"PR-10, defensin and cold dehydrin genes are among those over expressed in Oxytropis (Fabaceae) species adapted to the arctic","year":2011,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Stress Responses and Tolerance","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Centre Sève; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Gene; Genetics; Gene expression; Expressed sequence tag; Transcriptome; Gene family","score_opus":0.04432681846584168,"score_gpt":0.2047187737892644,"score_spread":0.1603919553234227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008699060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966377,0.0006651779,0.0011695541,0.000032764907,0.000005653518,0.000008888433,0.00095404725,0.00005118902,0.00047499262],"genre_scores_gemma":[0.98977154,0.0004036865,0.0027844224,0.000094350115,0.00000925317,0.000034579687,0.0046086665,0.000038457707,0.002254979],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999006,0.000004691355,0.0000050510685,0.00004899781,0.000016159442,0.000024494126],"domain_scores_gemma":[0.99987125,0.000021231572,0.000054044707,0.000009905673,0.00001621114,0.00002733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082587285,0.0003988297,0.0003606693,0.0004498068,0.00025793142,0.0001910451,0.00011348213,0.00019731309,0.000650112],"category_scores_gemma":[0.00009845242,0.00017810531,0.0003333703,0.00031434774,0.00014206875,0.0001700257,0.00023128318,0.0003527623,0.00020225222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042724383,0.0000039964675,0.0010305064,0.000020716037,0.0000027471008,0.000034183613,0.000039963437,0.000013498655,0.9981542,0.000008522098,0.000007858543,0.0006411564],"study_design_scores_gemma":[0.00001903336,0.00037404604,0.7576659,0.000019389037,0.00008775123,0.0018409161,0.00037767188,0.0005046249,0.2343128,0.00010845951,0.004664119,0.000025511017],"about_ca_topic_score_codex":0.0017206258,"about_ca_topic_score_gemma":0.002274587,"teacher_disagreement_score":0.0017206258,"about_ca_system_score_codex":0.00027694678,"about_ca_system_score_gemma":0.00014723971,"threshold_uncertainty_score":0.0034211874},"labels":[],"label_agreement":null},{"id":"W2012667925","doi":"10.1007/s10142-009-0150-y","title":"Recruitment of closely linked genes for divergent functions: the seed storage protein (Glu-3) and powdery mildew (Pm3) genes in wheat (Triticum aestivum L.)","year":2009,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Genome; Powdery mildew; Genetics; Gene; Locus (genetics); Retrotransposon; Brachypodium; Genome evolution; Chromosome; Common wheat; Transposable element; Botany","score_opus":0.051401590265391324,"score_gpt":0.25025059720898196,"score_spread":0.19884900694359064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012667925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99418855,0.000524307,0.003229366,0.00009949035,0.000028748225,0.000014189432,0.0002827831,0.00007229218,0.0015602111],"genre_scores_gemma":[0.99191636,0.00020112937,0.0028437,0.00034430533,0.000012014457,0.000023630822,0.0014055838,0.000058248155,0.003195019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998253,0.000012824809,0.000007724852,0.0000851199,0.000035351422,0.000033619064],"domain_scores_gemma":[0.9998566,0.000021106356,0.000030593837,0.000015758378,0.000025191426,0.000050763654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002067402,0.00027082727,0.0002726491,0.00021731472,0.00024949145,0.00052309467,0.00020337228,0.00046505834,0.0013598935],"category_scores_gemma":[0.00021737978,0.00017535957,0.00038662544,0.0001519439,0.00031362154,0.00025745746,0.0009201347,0.0007714347,0.00055064337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012879135,0.00001655169,0.0016462638,0.000027035783,0.0000055925416,0.00011850136,0.00009576849,0.000049202095,0.9945385,0.0002613845,0.000092708055,0.0030198388],"study_design_scores_gemma":[0.00020481284,0.00056101405,0.30834723,0.000048716858,0.00013938585,0.0050191185,0.0010624364,0.0041261995,0.6641708,0.0015197603,0.014742744,0.00005777099],"about_ca_topic_score_codex":0.0007671981,"about_ca_topic_score_gemma":0.0014464043,"teacher_disagreement_score":0.0013598935,"about_ca_system_score_codex":0.0003399069,"about_ca_system_score_gemma":0.00029270956,"threshold_uncertainty_score":0.004549265},"labels":[],"label_agreement":null},{"id":"W2022342560","doi":"10.1007/s10142-002-0068-0","title":"Dinucleotide compositional analysis of Sinorhizobium meliloti using the genome signature: distinguishing chromosomes and plasmids","year":2002,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Replicon; Biology; Sinorhizobium meliloti; Plasmid; Genetics; Chromosome; Genome; Gene; Circular bacterial chromosome","score_opus":0.027547435382716867,"score_gpt":0.21171111527171768,"score_spread":0.18416367988900081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022342560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955277,0.0001954604,0.0026641102,0.0000343567,0.000007071472,0.000007767056,0.0006875877,0.00004265302,0.00083339785],"genre_scores_gemma":[0.99453026,0.00011728614,0.0032163905,0.000034318484,0.0000045979627,0.00000685786,0.0012349265,0.00001611718,0.0008391824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99995124,0.000007040249,0.0000033467325,0.00001506378,0.000009749784,0.000013558159],"domain_scores_gemma":[0.9997584,0.00004597872,0.00005876283,0.000017772165,0.00004785734,0.00007114631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008062124,0.00017279417,0.00013059596,0.0005932412,0.00017291005,0.00018055162,0.0001256393,0.00014886304,0.0011515525],"category_scores_gemma":[0.00026319263,0.00009310509,0.00015534471,0.00049642264,0.00010808686,0.00008535936,0.00013443027,0.00021023481,0.00024259754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024570012,0.000007994608,0.0016064866,0.000017420627,0.000004430458,0.000021645881,0.000021640515,0.000035564422,0.9963909,0.00004786177,0.000013010382,0.0015873368],"study_design_scores_gemma":[0.000025955726,0.00034367735,0.18634951,0.000012942582,0.000112376394,0.00052161247,0.00020303146,0.003227608,0.80678445,0.0002216803,0.0021776934,0.000019520941],"about_ca_topic_score_codex":0.0034958392,"about_ca_topic_score_gemma":0.006616543,"teacher_disagreement_score":0.0034958392,"about_ca_system_score_codex":0.00016752665,"about_ca_system_score_gemma":0.00022107571,"threshold_uncertainty_score":0.0069509745},"labels":[],"label_agreement":null},{"id":"W2033082218","doi":"10.1007/s10142-013-0358-8","title":"Quantitative resistance in potato leaves to late blight associated with induced hydroxycinnamic acid amides","year":2014,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"","keywords":"Biology; Quantitative trait locus; Phenylpropanoid; Hydroxycinnamic acid; Genetics; Gene; Genotype; Blight; Candidate gene; Biochemistry; Botany","score_opus":0.020169297323361333,"score_gpt":0.21146795240449645,"score_spread":0.1912986550811351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033082218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691147,0.0003127149,0.0016768515,0.000048169702,0.000011765314,0.00002585405,0.00036377567,0.000047832462,0.0006015706],"genre_scores_gemma":[0.9958066,0.00013544361,0.00093892176,0.00004402157,0.0000052487994,0.000035149107,0.0008818512,0.000029038489,0.0021237284],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998036,0.000057621444,0.000019583424,0.00005653158,0.000027066677,0.00003566371],"domain_scores_gemma":[0.99961025,0.00008605154,0.0001219389,0.00004809409,0.000043208158,0.00009045842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021619974,0.00030414318,0.00020063767,0.00020630973,0.00009238174,0.00029513912,0.00021235114,0.00029767366,0.0013899767],"category_scores_gemma":[0.00019518835,0.0002279696,0.0002677377,0.00014107909,0.00018710377,0.00018232575,0.00018853301,0.00067096093,0.00035419804],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010793142,0.0000075141284,0.00006626887,0.000006892722,0.0000024708645,0.000008448515,0.0000044461226,0.000011924739,0.9996593,0.000015654681,0.0000035489388,0.0001055477],"study_design_scores_gemma":[0.000045070974,0.00041882458,0.016127951,0.0000054554116,0.000024295772,0.00014357676,0.00006298785,0.0009083734,0.9815469,0.000054296386,0.0006546619,0.0000075250723],"about_ca_topic_score_codex":0.0006239836,"about_ca_topic_score_gemma":0.0005604794,"teacher_disagreement_score":0.0013899767,"about_ca_system_score_codex":0.00040224014,"about_ca_system_score_gemma":0.00015803428,"threshold_uncertainty_score":0.004649937},"labels":[],"label_agreement":null},{"id":"W2035297183","doi":"10.1007/s10142-008-0074-y","title":"Onset of lactation in the bovine mammary gland: gene expression profiling indicates a strong inhibition of gene expression in cell proliferation","year":2008,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":114,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Vermont; Vermont Agricultural Experiment Station; U.S. Department of Agriculture","keywords":"Biology; Mammary gland; Lactation; Gene expression profiling; Gene; Gene expression; Cell growth; Regulation of gene expression; Genetics; Molecular biology; Cancer; Pregnancy; Breast cancer","score_opus":0.014927856646369524,"score_gpt":0.23182229343499958,"score_spread":0.21689443678863005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035297183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98719007,0.006721126,0.0019224492,0.00020504463,0.00003394417,0.000011866172,0.0015198503,0.00006824754,0.002327382],"genre_scores_gemma":[0.9879496,0.0021760857,0.0010139135,0.00032050099,0.00004411352,0.00004209646,0.0026699498,0.00005690906,0.005726869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997925,0.000018826,0.000008679469,0.00005529893,0.000059695656,0.0000649519],"domain_scores_gemma":[0.99971145,0.00007163212,0.00006080255,0.000019895202,0.000045118908,0.0000910389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016858072,0.00020238032,0.00042602504,0.0004761558,0.00027742595,0.00077638915,0.00015652305,0.00037637335,0.0013030476],"category_scores_gemma":[0.00018037611,0.00031169385,0.00030682964,0.0003444848,0.000277837,0.0002385085,0.00027143577,0.0007424258,0.0006148067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019087731,0.0000107351025,0.0022859506,0.00002318214,0.000005023732,0.000040606457,0.000031160755,0.000013109218,0.99641716,0.0000399601,0.000042720458,0.00089953723],"study_design_scores_gemma":[0.000021787495,0.000373325,0.57771474,0.000025455261,0.000055553715,0.00048746186,0.00026654126,0.0004735952,0.4152279,0.00011514797,0.0052206037,0.000017984328],"about_ca_topic_score_codex":0.002145341,"about_ca_topic_score_gemma":0.0034365945,"teacher_disagreement_score":0.002145341,"about_ca_system_score_codex":0.00047034194,"about_ca_system_score_gemma":0.00030260274,"threshold_uncertainty_score":0.004359126},"labels":[],"label_agreement":null},{"id":"W2067083428","doi":"10.1007/s10142-011-0214-7","title":"Identification of essential genes in C. jejuni genome highlights hyper-variable plasticity regions","year":2011,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Campylobacter jejuni; Gene; Genome; Transposable element; Genetics; Mutant; Forward genetics; Computational biology; Bacteria","score_opus":0.040085759308325065,"score_gpt":0.22106017485771198,"score_spread":0.18097441554938692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067083428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952329,0.00016124098,0.0031093713,0.000062298845,0.000008684991,0.000017444727,0.000586417,0.000073433555,0.00074826303],"genre_scores_gemma":[0.9975176,0.000043883963,0.001397638,0.000038299826,0.000007164851,0.000012762974,0.0006251058,0.000024962847,0.0003326955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998996,0.000011565881,0.0000072130683,0.00003677421,0.000021940443,0.00002280823],"domain_scores_gemma":[0.999647,0.00012928621,0.00006634868,0.00004752139,0.000033500262,0.000076284465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010399523,0.00026110816,0.0003815848,0.0004561789,0.00030436536,0.00033819844,0.0002849311,0.00036666944,0.0016928344],"category_scores_gemma":[0.00040071213,0.00017652888,0.00045196307,0.00046421416,0.00033800697,0.00017079704,0.00034615293,0.0006909582,0.0003793775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041399655,0.000036676887,0.0029720583,0.00006532541,0.000020112846,0.0003084867,0.00006090688,0.00045491077,0.9911266,0.00022808203,0.000062794556,0.00425007],"study_design_scores_gemma":[0.00009185439,0.00071950484,0.36649206,0.000048211292,0.00023786463,0.0031187886,0.00034390224,0.0085260905,0.61454785,0.0016223983,0.0041830493,0.00006838869],"about_ca_topic_score_codex":0.0008038469,"about_ca_topic_score_gemma":0.0014639511,"teacher_disagreement_score":0.0016928344,"about_ca_system_score_codex":0.0002223218,"about_ca_system_score_gemma":0.00025059236,"threshold_uncertainty_score":0.005663097},"labels":[],"label_agreement":null},{"id":"W2073006308","doi":"10.1007/s10142-013-0310-y","title":"A root-specific wall-associated kinase gene, HvWAK1, regulates root growth and is highly divergent in barley and other cereals","year":2013,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Arabidopsis; Gene; Genetics; Gene family; Exon; Intron; Gene expression; Mutant; Gene duplication; Coding region; Conserved sequence; Peptide sequence","score_opus":0.016660986073934986,"score_gpt":0.18609434324543628,"score_spread":0.1694333571715013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073006308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948198,0.000555597,0.0032281745,0.000046658817,0.000022118436,0.000005964695,0.00040086414,0.000071470655,0.00084932696],"genre_scores_gemma":[0.99438465,0.00022722798,0.0014499639,0.00006114539,0.000008519241,0.000008373888,0.0015142488,0.00008226944,0.0022636328],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99990547,0.0000066797325,0.000005712443,0.000045831595,0.000018439448,0.00001783771],"domain_scores_gemma":[0.99981683,0.000040411192,0.000041401487,0.00001764246,0.000026192547,0.000057531382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011294396,0.00038115054,0.00036591204,0.00034868935,0.00025320056,0.00042965446,0.0002642099,0.000250901,0.0005747174],"category_scores_gemma":[0.00015680598,0.00025147625,0.00022329732,0.0002275813,0.00031424378,0.00024073305,0.00028903462,0.0005225482,0.00040822208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010071394,0.000005453264,0.00075499126,0.000014892839,0.000004964107,0.0000746433,0.000040686173,0.0000539643,0.9977431,0.0001446158,0.000025613212,0.0010363295],"study_design_scores_gemma":[0.00007884485,0.0002355779,0.3001924,0.000046774254,0.00012579045,0.0034275434,0.00051313324,0.0039254283,0.6828083,0.0012903515,0.0072935284,0.00006245158],"about_ca_topic_score_codex":0.0018826034,"about_ca_topic_score_gemma":0.0025662624,"teacher_disagreement_score":0.0018826034,"about_ca_system_score_codex":0.00042530746,"about_ca_system_score_gemma":0.00025556696,"threshold_uncertainty_score":0.003743291},"labels":[],"label_agreement":null},{"id":"W2073848693","doi":"10.1007/s10142-008-0099-2","title":"Structure–function analysis of the barley genome: the gene-rich region of chromosome 2HL","year":2008,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Grains Research and Development Corporation","keywords":"Biology; Genetics; Triticeae; Genome; Gene; Chromosome; Bacterial artificial chromosome; Hordeum vulgare; Botany; Poaceae","score_opus":0.020853992069694138,"score_gpt":0.19496472093202363,"score_spread":0.1741107288623295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073848693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99569666,0.00046742853,0.0013982593,0.00007721984,0.000009436937,0.000010278583,0.0012723322,0.00004317976,0.0010252361],"genre_scores_gemma":[0.9936341,0.0001358717,0.0015045012,0.000045488578,0.0000053782537,0.000008035032,0.003480661,0.000021381213,0.0011647247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99994755,0.000005520514,0.0000025557863,0.000020377292,0.0000109515395,0.000013100002],"domain_scores_gemma":[0.9999435,0.000012429094,0.000010178015,0.000006515321,0.0000073252463,0.000020163601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007489306,0.00022278311,0.00023870416,0.00040295706,0.00032033556,0.0002910699,0.0002799565,0.00018618406,0.001606209],"category_scores_gemma":[0.00010875702,0.00013457854,0.00035427217,0.00046341724,0.00017800073,0.00008147425,0.00014830595,0.00029683876,0.00035543184],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035471053,0.000025109446,0.0017925191,0.000027318187,0.000011649292,0.00014586501,0.000041062405,0.00020720945,0.99569076,0.0001257628,0.00007600416,0.0015021351],"study_design_scores_gemma":[0.00020333705,0.00046001683,0.4570195,0.000016766926,0.00013665341,0.0012913741,0.0002464796,0.00390035,0.5283353,0.0005250873,0.007842748,0.00002251484],"about_ca_topic_score_codex":0.009656353,"about_ca_topic_score_gemma":0.0072671627,"teacher_disagreement_score":0.009656353,"about_ca_system_score_codex":0.0005796335,"about_ca_system_score_gemma":0.00037205004,"threshold_uncertainty_score":0.019200265},"labels":[],"label_agreement":null},{"id":"W2077425812","doi":"10.1007/s10142-010-0202-3","title":"Cytoplasmic male sterility-regulated novel microRNAs from maize","year":2010,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"National Natural Science Foundation of China","keywords":"Biology; Cytoplasmic male sterility; Software maintainer; Microspore; microRNA; Cell biology; Cytoplasm; Tetrad; Pollen; Small RNA; Genetics; Sterility; Regulation of gene expression; Stamen; Gene; Botany","score_opus":0.020025130104433717,"score_gpt":0.21968767229119446,"score_spread":0.19966254218676074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077425812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757391,0.0026762288,0.015783226,0.00030550305,0.00013027513,0.0000817813,0.001333829,0.0003115101,0.0036385255],"genre_scores_gemma":[0.98818016,0.0005148837,0.004562951,0.00021606364,0.000043405238,0.000051096384,0.0030358206,0.00018787464,0.0032076659],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982435,0.000012868855,0.0000147637575,0.00006304104,0.00004922454,0.00003573547],"domain_scores_gemma":[0.9997049,0.00005891068,0.00011945459,0.000027798098,0.00002968142,0.00005931386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015687806,0.0006888824,0.00049748895,0.00038321872,0.0003986533,0.00058517506,0.00037570606,0.00043942072,0.0010453614],"category_scores_gemma":[0.0002180351,0.00048455154,0.0005219158,0.00018490989,0.00031247875,0.00027477462,0.00045702548,0.0012362095,0.0007224755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000506105,0.0000026020527,0.0000608417,0.000019735178,0.0000031306183,0.000053016895,0.000016240096,0.0000299198,0.9991528,0.00016724457,0.00002390365,0.00042001216],"study_design_scores_gemma":[0.000121128345,0.000195813,0.024974016,0.000017837521,0.00010413107,0.00096514996,0.000081992126,0.0015330884,0.95897305,0.00051703583,0.012469973,0.00004679374],"about_ca_topic_score_codex":0.0009873582,"about_ca_topic_score_gemma":0.0019460855,"teacher_disagreement_score":0.0010453614,"about_ca_system_score_codex":0.0007675461,"about_ca_system_score_gemma":0.00040959852,"threshold_uncertainty_score":0.0055689216},"labels":[],"label_agreement":null},{"id":"W2085142868","doi":"10.1007/s10142-002-0059-1","title":"Yeast and drug discovery","year":2002,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Yeast; Biology; Drug discovery; Candida albicans; Saccharomyces cerevisiae; Identification (biology); Computational biology; Drug; Antifungal; Drug target; Antifungal drug; Antifungal drugs; Biotechnology; Genetics; Bioinformatics; Microbiology; Pharmacology; Ecology","score_opus":0.03582725832314124,"score_gpt":0.2971393833053343,"score_spread":0.26131212498219303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085142868","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00023841058,0.9754613,0.0023830794,0.002968388,0.0033233876,0.000037706024,0.0001304369,0.00013543363,0.015321913],"genre_scores_gemma":[0.003051955,0.9697073,0.002548296,0.003033426,0.0019936522,0.00006261401,0.0002575539,0.000022602975,0.019322522],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99954164,0.00008303736,0.000029695995,0.000072701754,0.00021864392,0.000054297292],"domain_scores_gemma":[0.99970067,0.00010310046,0.000029906843,0.000034107554,0.00007715103,0.000055186487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001179061,0.0018208078,0.0022709602,0.003180212,0.00056429056,0.0019931137,0.0018341125,0.0020727937,0.011400886],"category_scores_gemma":[0.00086346467,0.0004394431,0.00061840215,0.0039304495,0.0013860018,0.0019113836,0.0014654666,0.0027110456,0.008344577],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014158266,0.000089294204,0.00013456534,0.0044466006,0.00007713221,0.00040774423,0.000038006503,0.00055918045,0.002509804,0.024322063,0.20325665,0.76401734],"study_design_scores_gemma":[0.000023102879,0.00003455153,0.000082439474,0.00028836454,0.000021640215,0.00038215687,0.00001094538,0.00006783285,0.00035511854,0.0040647234,0.99466336,0.0000057959096],"about_ca_topic_score_codex":0.0017756053,"about_ca_topic_score_gemma":0.004141952,"teacher_disagreement_score":0.011400886,"about_ca_system_score_codex":0.0017897058,"about_ca_system_score_gemma":0.0015115098,"threshold_uncertainty_score":0.03813976},"labels":[],"label_agreement":null},{"id":"W2086942548","doi":"10.1007/s10142-010-0175-2","title":"Skeletal muscle specific genes networks in cattle","year":2010,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Muscle Physiology and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministerio de Ciencia e Innovación; McGill University; Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria","keywords":"Biology; Skeletal muscle; Gene; Gene expression; DNA microarray; Genetics; Context (archaeology); Gene regulatory network; Gene family; Regulation of gene expression; Computational biology; Anatomy","score_opus":0.00884031196219191,"score_gpt":0.22415500076553843,"score_spread":0.21531468880334653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086942548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857459,0.0017594014,0.0058128946,0.00011261832,0.000007937336,0.000016291327,0.0045184107,0.000057724177,0.0019687465],"genre_scores_gemma":[0.9776113,0.0014504635,0.007408847,0.00008751924,0.000014744413,0.000077097255,0.010776262,0.000027793232,0.0025459852],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99961156,0.000056693414,0.00001447697,0.00018401594,0.00007018885,0.00006312002],"domain_scores_gemma":[0.9997563,0.00008592715,0.000073069044,0.0000121515495,0.00004461508,0.000027971508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023462142,0.00021268467,0.00029761408,0.0012749406,0.00031651417,0.0005596149,0.00016350555,0.00022196447,0.0011880328],"category_scores_gemma":[0.00050327583,0.00018699265,0.00030345906,0.0021091427,0.00023488776,0.00026825946,0.0003438924,0.00016470651,0.00021756269],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011763731,0.00009794507,0.38713083,0.00095212646,0.0007299169,0.0009308158,0.0015845387,0.016927008,0.48566815,0.0033915623,0.0021450475,0.09926562],"study_design_scores_gemma":[0.000012805419,0.0001513448,0.9668884,0.00003719015,0.0002146744,0.00064114877,0.00047502486,0.012908317,0.009802235,0.0021675865,0.0066828956,0.00001829135],"about_ca_topic_score_codex":0.0070503806,"about_ca_topic_score_gemma":0.010788205,"teacher_disagreement_score":0.0070503806,"about_ca_system_score_codex":0.00057664467,"about_ca_system_score_gemma":0.00037980813,"threshold_uncertainty_score":0.014018714},"labels":[],"label_agreement":null},{"id":"W2097695742","doi":"10.1007/s10142-008-0087-6","title":"Genomic differences between Campylobacter jejuni isolates identify surface membrane and flagellar function gene products potentially important for colonizing the chicken intestine","year":2008,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Campylobacter jejuni; Campylobacter; Gene; Proteomics; Genome; Microbiology; Proteome; genomic DNA; Comparative genomics; Genetics; Genomics; Bacteria","score_opus":0.04665168536023372,"score_gpt":0.23280449880002957,"score_spread":0.18615281343979584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097695742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989002,0.00009311189,0.00031901058,0.000031955275,0.0000036236477,0.00000791519,0.00024271938,0.0000052416185,0.0003962922],"genre_scores_gemma":[0.9980464,0.000051551404,0.0005395577,0.000047983736,0.0000055505125,0.00000825974,0.0008611433,0.0000066184693,0.00043279724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998797,0.0000144778705,0.00000772064,0.00003596934,0.000021179876,0.00004087616],"domain_scores_gemma":[0.9995945,0.0001477006,0.000079920654,0.000023491946,0.000055652356,0.000098752666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013288813,0.0003845103,0.00029839142,0.00079244014,0.00025121192,0.0003801863,0.0001880031,0.00050749845,0.0016385417],"category_scores_gemma":[0.0003718212,0.00023231839,0.00034389095,0.0004162254,0.0004111951,0.0001728896,0.00029509663,0.0005387913,0.0003675652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006435642,0.00008119179,0.017074268,0.000040162926,0.000027358585,0.00022479429,0.00025680542,0.00006610535,0.979151,0.00010713045,0.00004732119,0.0022801878],"study_design_scores_gemma":[0.000051092025,0.00086099684,0.9123075,0.000025428453,0.00010535208,0.0018002155,0.0009781838,0.00067330943,0.08178641,0.0002375285,0.0011606143,0.000013458111],"about_ca_topic_score_codex":0.0036086007,"about_ca_topic_score_gemma":0.0032625082,"teacher_disagreement_score":0.0036086007,"about_ca_system_score_codex":0.0003182892,"about_ca_system_score_gemma":0.00021767183,"threshold_uncertainty_score":0.007175207},"labels":[],"label_agreement":null},{"id":"W2116031051","doi":"10.1007/s10142-010-0173-4","title":"Fine mapping and syntenic integration of the semi-dwarfing gene sdw3 of barley","year":2010,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Leibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung; Bộ Giáo dục và Ðào tạo","keywords":"Synteny; Biology; Brachypodium; Genetics; Brachypodium distachyon; Hordeum vulgare; Bacterial artificial chromosome; Contig; Gene; Orthologous Gene; Locus (genetics); Gene mapping; Chromosome; Genome; Botany; Poaceae","score_opus":0.018703068901898927,"score_gpt":0.20029875870978675,"score_spread":0.18159568980788782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116031051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99530244,0.00013671436,0.0034507846,0.000025525494,0.000008322277,0.000013820662,0.00023928579,0.000029270008,0.00079374324],"genre_scores_gemma":[0.99525356,0.0000870653,0.0018971843,0.000026102956,0.0000034733744,0.000009745334,0.0010833086,0.000037364596,0.0016022812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998816,0.00001412451,0.000010971955,0.000040749506,0.000032675336,0.000019820596],"domain_scores_gemma":[0.999813,0.000048808186,0.000038874634,0.000033524237,0.000018301342,0.000047500773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016095368,0.00020862573,0.00023901614,0.00050736155,0.0003034119,0.0002739974,0.00025717876,0.00022258182,0.0005632178],"category_scores_gemma":[0.00023114936,0.00024815556,0.000288882,0.00038975934,0.00031633224,0.0001382587,0.00051731465,0.0005968462,0.00032368663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007738334,0.000011486988,0.00055469497,0.000011665623,0.000005132666,0.00005772152,0.000050968414,0.000060698396,0.9975479,0.00013789626,0.00001275094,0.0014716446],"study_design_scores_gemma":[0.000083168525,0.00027995594,0.25729147,0.00002217674,0.00012454345,0.0015258685,0.0003907056,0.0033747787,0.7285621,0.0012231676,0.007087528,0.0000344977],"about_ca_topic_score_codex":0.0023143399,"about_ca_topic_score_gemma":0.004659524,"teacher_disagreement_score":0.0023143399,"about_ca_system_score_codex":0.00040859994,"about_ca_system_score_gemma":0.00028493872,"threshold_uncertainty_score":0.004601717},"labels":[],"label_agreement":null},{"id":"W2135424834","doi":"10.1007/s10142-004-0118-x","title":"A comparative genomic analysis of ESTs from Ustilago maydis","year":2004,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; University of Toronto","keywords":"Biology; Ustilago; Computational biology; Genetics; Gene","score_opus":0.028019343321367803,"score_gpt":0.23442330864405028,"score_spread":0.2064039653226825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135424834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99142075,0.0009959873,0.0028589435,0.00011128369,0.000028975019,0.000035122084,0.0027295754,0.000054512715,0.0017649374],"genre_scores_gemma":[0.96129036,0.0011505642,0.005052845,0.0002903717,0.000037437087,0.00004956506,0.026783986,0.000067431814,0.005277472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999106,0.000008582832,0.000008406238,0.000032156953,0.000017916671,0.00002231655],"domain_scores_gemma":[0.99976736,0.0000801479,0.000043747546,0.000022948025,0.0000347485,0.00005100908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012955903,0.00038378575,0.0003391099,0.000948953,0.00033960567,0.00036447903,0.00022511308,0.00028993934,0.0015113241],"category_scores_gemma":[0.00023835916,0.00018689122,0.0006153478,0.00074535783,0.00022164725,0.00019200712,0.0003781131,0.0005419377,0.0005981797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002933813,0.000019668489,0.00038906522,0.000051748444,0.000010111376,0.00017494675,0.00008158607,0.000042106632,0.9975642,0.000059419297,0.00003302054,0.001280839],"study_design_scores_gemma":[0.00020471944,0.0014511418,0.33897072,0.000075985605,0.0004956094,0.0038754044,0.0009915879,0.0017568283,0.6260316,0.00054315006,0.02555106,0.00005219631],"about_ca_topic_score_codex":0.0020449355,"about_ca_topic_score_gemma":0.0037252055,"teacher_disagreement_score":0.0020449355,"about_ca_system_score_codex":0.00029335468,"about_ca_system_score_gemma":0.0002245084,"threshold_uncertainty_score":0.0050559044},"labels":[],"label_agreement":null},{"id":"W2147604955","doi":"10.1007/s10142-014-0363-6","title":"Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)","year":2014,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Genetic and Environmental Crop Studies","field":"Agricultural and Biological Sciences","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Consortium of International Agricultural Research Centers; University of California, Davis; Bill and Melinda Gates Foundation","keywords":"Contig; Biology; Quantitative trait locus; Genetics; Genome; Bacterial artificial chromosome; Positional cloning; Reference genome; Whole genome sequencing; Fusarium wilt; Gene mapping; Gene; Fusarium oxysporum; Chromosome; Locus (genetics)","score_opus":0.010920192346003284,"score_gpt":0.1771135452883637,"score_spread":0.16619335294236043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147604955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78835833,0.006493609,0.13726933,0.00037800975,0.000104258375,0.0007951057,0.054928206,0.0014934244,0.010179755],"genre_scores_gemma":[0.51911837,0.005280541,0.2670257,0.00022725806,0.000059726957,0.0012395062,0.1829392,0.00031829433,0.023791436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998609,0.000010626498,0.000007023794,0.000070967166,0.000032513577,0.000017951868],"domain_scores_gemma":[0.99983835,0.000017246739,0.000034582095,0.000022302896,0.000035335874,0.000052286272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018948907,0.000660282,0.0005571019,0.002163172,0.00052298396,0.0004671,0.00052291644,0.00035636695,0.001809217],"category_scores_gemma":[0.00023853328,0.00039630703,0.0008454593,0.0018261351,0.0002255733,0.000242463,0.00057656225,0.0010149339,0.0010569713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038634357,0.00007737475,0.0015066761,0.0003918326,0.000045837078,0.0005583028,0.00023903028,0.00079245534,0.9752138,0.00070025935,0.00046799562,0.019620053],"study_design_scores_gemma":[0.0005096241,0.0019039565,0.5347265,0.0004229181,0.0012167316,0.005388291,0.00055414793,0.015858099,0.2611085,0.0020352495,0.17606089,0.0002150195],"about_ca_topic_score_codex":0.014464951,"about_ca_topic_score_gemma":0.012809884,"teacher_disagreement_score":0.014464951,"about_ca_system_score_codex":0.0007242837,"about_ca_system_score_gemma":0.0013786638,"threshold_uncertainty_score":0.028761506},"labels":[],"label_agreement":null},{"id":"W2150563829","doi":"10.1007/s10142-008-0083-x","title":"Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array","year":2008,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Atlantic Canada Opportunities Agency; Scottish Government; Genome Canada","keywords":"Biology; UniGene; Transcriptome; Expressed sequence tag; Gene; Genetics; Gene Annotation; Gene expression; Computational biology; Gene expression profiling; Genome","score_opus":0.04221767650087402,"score_gpt":0.2137674036110581,"score_spread":0.17154972711018407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150563829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9155086,0.0018163885,0.0606157,0.00036327177,0.000080049846,0.00025352696,0.013822124,0.0008070432,0.0067332243],"genre_scores_gemma":[0.81415486,0.00229805,0.13194871,0.0006564099,0.00007917237,0.00074129243,0.04204955,0.00040255892,0.0076693404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996283,0.000022005202,0.000019458193,0.00017969417,0.00009960329,0.000050986426],"domain_scores_gemma":[0.9997533,0.00008074918,0.000047723555,0.000028502851,0.000035574347,0.00005431635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002535286,0.00037084433,0.00061906676,0.0005913526,0.0002786474,0.0005489732,0.00022394313,0.0002646579,0.0011461382],"category_scores_gemma":[0.00042084674,0.00029892215,0.000342814,0.0006456668,0.00028007795,0.00025211027,0.00051856856,0.00068718934,0.00059460546],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049041948,0.000009516577,0.0006969954,0.000029752226,0.000002935101,0.000013091422,0.000016456599,0.00007548409,0.99650985,0.00003624924,0.00006729283,0.0024933233],"study_design_scores_gemma":[0.000030242954,0.00028624103,0.087075524,0.000016835726,0.000067950605,0.00046016707,0.00007227974,0.005446747,0.89922565,0.00026763676,0.0070144543,0.000036211408],"about_ca_topic_score_codex":0.00046444102,"about_ca_topic_score_gemma":0.0011663596,"teacher_disagreement_score":0.0011461382,"about_ca_system_score_codex":0.000335051,"about_ca_system_score_gemma":0.00032831184,"threshold_uncertainty_score":0.003834188},"labels":[],"label_agreement":null},{"id":"W2154616300","doi":"10.1007/s10142-004-0111-4","title":"In silico physical mapping software for the Triticum aestivum genome","year":2004,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Wheat and Barley Genetics and Pathology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"University of Arizona; Clemson University","keywords":"Biology; Genome; In silico; Computational biology; Physical mapping; Chromosome; Genetics; Sequence-tagged site; Positional cloning; Gene mapping; Software; Whole genome sequencing; SNP; Genome project; Genomics; Gene; Computer science; Single-nucleotide polymorphism","score_opus":0.02930542337135001,"score_gpt":0.23321131987236765,"score_spread":0.20390589650101765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154616300","genre_codex":"methods","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03264887,0.00082421786,0.62974465,0.00048680688,0.00046755347,0.00032242193,0.045155965,0.27993333,0.01041611],"genre_scores_gemma":[0.15555312,0.0014191502,0.6227836,0.00042304507,0.00010084682,0.0013201581,0.1480452,0.05693023,0.013424679],"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99977535,0.00005152805,0.000027488417,0.000080131416,0.00004535083,0.00002003513],"domain_scores_gemma":[0.99936277,0.00037612836,0.000062957224,0.00009762068,0.000066467735,0.000034094952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013388679,0.0019641125,0.0013448923,0.0013904002,0.0011839698,0.0017687769,0.0021249773,0.00090924173,0.028451936],"category_scores_gemma":[0.0020897991,0.0015941139,0.0021253566,0.0010380212,0.0003253065,0.0010322173,0.0009661484,0.0017586983,0.00884368],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005613359,0.0010856902,0.016681418,0.0078103244,0.003022444,0.0031573412,0.002899956,0.04384167,0.26715207,0.03923105,0.36319232,0.24631232],"study_design_scores_gemma":[0.0020136663,0.0006064227,0.017256347,0.00051952834,0.0020643987,0.0030439794,0.00064359856,0.31652153,0.15971063,0.052165102,0.44504312,0.0004116352],"about_ca_topic_score_codex":0.0017876951,"about_ca_topic_score_gemma":0.0028758447,"teacher_disagreement_score":0.028451936,"about_ca_system_score_codex":0.00061237335,"about_ca_system_score_gemma":0.0011437279,"threshold_uncertainty_score":0.09518123},"labels":[],"label_agreement":null},{"id":"W2267953510","doi":"10.1007/s10142-016-0478-z","title":"An analysis of the validity and utility of the proximon proposition","year":2016,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Operon; Metagenomics; Genome; Biology; Computational biology; Annotation; Proposition; Gene; Genetics; Computer science; Escherichia coli","score_opus":0.017177106123711303,"score_gpt":0.24083546485341695,"score_spread":0.22365835872970563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2267953510","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20368317,0.008255959,0.360438,0.037530392,0.0012984922,0.00013674988,0.00061693875,0.0003998316,0.38764048],"genre_scores_gemma":[0.95871276,0.0016060284,0.028630007,0.0012939954,0.00065124716,0.000103053375,0.00013648995,0.000109,0.008757482],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.991011,0.0046583223,0.00027067302,0.0013400528,0.0022272845,0.0004927468],"domain_scores_gemma":[0.9200906,0.067606,0.0022515382,0.005454455,0.003893468,0.0007039112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.019261772,0.00071825215,0.0011532749,0.004377949,0.0033677616,0.0042266534,0.0032223095,0.002481311,0.014916428],"category_scores_gemma":[0.06500476,0.00038866219,0.0011120181,0.0034160079,0.015998686,0.010224543,0.0056910207,0.004174066,0.0015293063],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014581716,0.000016876425,0.0011406491,0.00005551024,0.0000248822,0.00011090181,0.00021706564,0.00088559865,0.00013769296,0.9874176,0.00066117523,0.009186331],"study_design_scores_gemma":[0.00003559377,0.00006419068,0.0011932192,0.000050825325,0.000053645086,0.00025709328,0.00029939838,0.009561808,0.0005549307,0.98290515,0.0050038337,0.000020271034],"about_ca_topic_score_codex":0.00088580913,"about_ca_topic_score_gemma":0.00061007694,"teacher_disagreement_score":0.019261772,"about_ca_system_score_codex":0.0019700392,"about_ca_system_score_gemma":0.0014725898,"threshold_uncertainty_score":0.10186726},"labels":[],"label_agreement":null},{"id":"W2346738495","doi":"10.1007/s10142-016-0494-z","title":"Structural organization of fatty acid desaturase loci in linseed lines with contrasting linolenic acid contents","year":2016,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"International Development Research Centre; University of Manitoba","funders":"Genome Prairie; Flax Council of Canada; Genome Canada","keywords":"Biology; Genetics; Locus (genetics); Indel; Gene; Linum; Single-nucleotide polymorphism; Allele; Genotype; Botany","score_opus":0.011907013125847035,"score_gpt":0.208915094846734,"score_spread":0.19700808172088696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2346738495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941696,0.00024672286,0.0031386788,0.00008217012,0.00001537919,0.00001865559,0.0009188932,0.00010057713,0.0013093714],"genre_scores_gemma":[0.9921185,0.00010355965,0.0020753434,0.00010957749,0.0000070666647,0.00003535962,0.001948937,0.000105831845,0.003495872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998878,0.000011343092,0.000011131167,0.000051549676,0.000016464895,0.000021694026],"domain_scores_gemma":[0.9996018,0.00010671658,0.000121532,0.000044640536,0.000035926572,0.00008941386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000087301385,0.0002884843,0.0002508675,0.0007698037,0.00028084219,0.00027557084,0.00035566828,0.00033909484,0.002136696],"category_scores_gemma":[0.00017535339,0.0003978858,0.0004969453,0.00033937523,0.0003011327,0.00012403444,0.00036763476,0.0006711438,0.0006281805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011028028,0.000009398958,0.00029759042,0.00001065831,0.0000057880625,0.000031132215,0.000030714746,0.000034928995,0.99884534,0.00009604526,0.000010727296,0.00051741156],"study_design_scores_gemma":[0.00012444852,0.00031054902,0.17463216,0.000031678595,0.00018720869,0.0007568767,0.0003065421,0.00202073,0.816176,0.0005172213,0.0048852633,0.000051368606],"about_ca_topic_score_codex":0.0026579546,"about_ca_topic_score_gemma":0.004602926,"teacher_disagreement_score":0.0026579546,"about_ca_system_score_codex":0.00048629337,"about_ca_system_score_gemma":0.00020759272,"threshold_uncertainty_score":0.0071480274},"labels":[],"label_agreement":null},{"id":"W2590844278","doi":"10.1007/s10142-017-0549-9","title":"Gene expression profiles predictive of cold-induced sweetening in potato","year":2017,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Potato Plant Research","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Gene expression; Gene; Transcriptome; RNA-Seq; Genetics","score_opus":0.048436161516228884,"score_gpt":0.2679814353206508,"score_spread":0.2195452738044219,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2590844278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979949,0.00018534882,0.00041345716,0.00001741813,0.0000028848342,0.0000042116276,0.0010044326,0.00001054088,0.0003668757],"genre_scores_gemma":[0.99582666,0.00016877818,0.0003774164,0.000030614825,0.000004989913,0.000015303218,0.002794823,0.000012535444,0.0007689124],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999316,0.000006786278,0.0000048995234,0.000029087232,0.000009891922,0.000017818063],"domain_scores_gemma":[0.9997904,0.000065636035,0.00005151905,0.00001155182,0.00003970441,0.00004131634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010921378,0.00014761365,0.0002612481,0.00061597716,0.00016599114,0.0003758746,0.00006623411,0.00018046111,0.0007575315],"category_scores_gemma":[0.00020621455,0.00013177985,0.00022575531,0.0005159599,0.00017204367,0.00014847447,0.0001872244,0.0002695619,0.000208133],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045818317,0.000018075341,0.014359508,0.000026205531,0.00001770426,0.000046281344,0.000064314816,0.00018421645,0.98308116,0.000046823097,0.000043006236,0.0016545339],"study_design_scores_gemma":[0.000016872078,0.00037503324,0.8643215,0.0000105450235,0.00007011312,0.0002712239,0.00041260937,0.0023632082,0.13115428,0.00020001677,0.0007845078,0.00002008062],"about_ca_topic_score_codex":0.0008764739,"about_ca_topic_score_gemma":0.0009571991,"teacher_disagreement_score":0.0008764739,"about_ca_system_score_codex":0.00017568392,"about_ca_system_score_gemma":0.00010549796,"threshold_uncertainty_score":0.0025342703},"labels":[],"label_agreement":null},{"id":"W2610823113","doi":"10.1007/s10142-017-0562-z","title":"Expression analysis of genes encoding double B-box zinc finger proteins in maize","year":2017,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Government of Shandong Province","keywords":"Biology; Gene; Subfamily; Gene family; Genetics; Arabidopsis; Genome; Zinc finger; Gene duplication; TBX1; Tandem exon duplication; Function (biology); Gene expression; Computational biology; Promoter; Transcription factor","score_opus":0.05222669565900234,"score_gpt":0.2825623405395749,"score_spread":0.23033564488057257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610823113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598545,0.0005563882,0.0015722208,0.000050138246,0.000010701888,0.000014435574,0.0010761535,0.00003343503,0.00070099445],"genre_scores_gemma":[0.99151164,0.00042852396,0.0022111018,0.00006794993,0.000010791548,0.000025522371,0.0028152992,0.00005021732,0.0028790033],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998702,0.0000061178876,0.000009422745,0.000047521706,0.000028813696,0.000037880636],"domain_scores_gemma":[0.9998275,0.000040521998,0.000047954032,0.000014602812,0.00002389068,0.000045551245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000108885804,0.000285935,0.00027675938,0.0006613863,0.00030242797,0.00032571767,0.00023564686,0.00026625133,0.0006004271],"category_scores_gemma":[0.0001532571,0.0002560091,0.00038622023,0.0005292663,0.0003105421,0.00022085427,0.00024938013,0.00039133977,0.00025445488],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086535474,0.000004099583,0.00028570532,0.000012716185,0.0000022835682,0.00001844894,0.000024296325,0.000029284636,0.9990902,0.0000840416,0.000007485418,0.0003548526],"study_design_scores_gemma":[0.000051544248,0.00018926938,0.060016394,0.000009451644,0.000076028526,0.00026118153,0.00016251454,0.0014075155,0.9336762,0.00028299307,0.0038453743,0.000021542584],"about_ca_topic_score_codex":0.004069782,"about_ca_topic_score_gemma":0.0031053778,"teacher_disagreement_score":0.004069782,"about_ca_system_score_codex":0.0007129982,"about_ca_system_score_gemma":0.0003738817,"threshold_uncertainty_score":0.008092165},"labels":[],"label_agreement":null},{"id":"W2800721324","doi":"10.1007/s10142-018-0612-1","title":"Proteomics analysis reveals marker proteins for minor vein initiation in rice leaf","year":2018,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant responses to water stress","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Proteomics; Botany; Photosynthesis; Anatomy; Gene; Biochemistry","score_opus":0.029307619236795444,"score_gpt":0.24081932859850144,"score_spread":0.211511709361706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800721324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99325365,0.0004710778,0.0040192446,0.00009308586,0.000020080091,0.000017134429,0.00084501214,0.000117323514,0.0011634463],"genre_scores_gemma":[0.9837388,0.00041431023,0.004424579,0.00013929917,0.000019849154,0.000030547137,0.0031621715,0.00010477796,0.007965787],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999546,0.0000026810872,0.0000026281573,0.000017210588,0.000008541084,0.00001430072],"domain_scores_gemma":[0.9998709,0.000018871266,0.000029862596,0.000012369258,0.000017601702,0.000050292147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009029374,0.00038025973,0.00022121951,0.0002721266,0.00023495362,0.00036969237,0.00021997205,0.00023682034,0.0012878788],"category_scores_gemma":[0.00012287243,0.00025325752,0.00041210573,0.00021815051,0.00017855625,0.00035306092,0.00023431939,0.0004973173,0.0007226573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000637847,0.000005757795,0.0002509251,0.000009566467,0.0000016238313,0.000030489568,0.000010186269,0.000008587454,0.99932194,0.00003730469,0.000020553704,0.00023929699],"study_design_scores_gemma":[0.00001920507,0.00015862554,0.10298209,0.0000051521874,0.000038645794,0.00035979305,0.000120471035,0.0011949631,0.89293885,0.00012225073,0.0020505297,0.000009490749],"about_ca_topic_score_codex":0.0019075195,"about_ca_topic_score_gemma":0.0026623632,"teacher_disagreement_score":0.0019075195,"about_ca_system_score_codex":0.00041094725,"about_ca_system_score_gemma":0.000277244,"threshold_uncertainty_score":0.0043084025},"labels":[],"label_agreement":null},{"id":"W2810801525","doi":"10.1007/s10142-018-0626-8","title":"SUPPRESSOR OF OVEREXPRESSION OF CONSTANS1 influences flowering time, lateral branching, oil quality, and seed yield in Brassica juncea cv. Varuna","year":2018,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","funders":"","keywords":"Biology; Silique; Brassica; Polyploid; Rapeseed; MADS-box; Gene; Genome; Genetics; Arabidopsis; Botany; Mutant","score_opus":0.03181218851669601,"score_gpt":0.27371045041685904,"score_spread":0.24189826190016303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810801525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876803,0.00026894998,0.000269077,0.00003145641,0.000011836835,0.000002586797,0.00019984493,0.00005701205,0.0003911882],"genre_scores_gemma":[0.9968317,0.00012279516,0.00018914843,0.000028759168,0.000004567469,0.000005082572,0.00047782226,0.00004415085,0.0022960042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998516,0.000019547773,0.000013410934,0.000056560442,0.0000282753,0.00003059465],"domain_scores_gemma":[0.9996816,0.00007595912,0.00007226349,0.000024034993,0.000019403915,0.00012681367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014401949,0.00040272877,0.0002978593,0.00061948545,0.00028325425,0.00041034087,0.0003138743,0.0002819752,0.0011194971],"category_scores_gemma":[0.00014319104,0.00024842448,0.0002474451,0.0002704606,0.0002701884,0.00017521516,0.00029225257,0.0005819857,0.00026490708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013552516,0.000014908599,0.0003935985,0.000010578185,0.0000056843473,0.000045678997,0.00002796936,0.00003769292,0.9989466,0.000041240743,0.000014313416,0.00032619928],"study_design_scores_gemma":[0.00010703254,0.0005657951,0.14010136,0.000019041265,0.00018518731,0.0007327144,0.0004676811,0.005160147,0.84859693,0.0002309633,0.0037736888,0.0000593949],"about_ca_topic_score_codex":0.005230764,"about_ca_topic_score_gemma":0.00587627,"teacher_disagreement_score":0.005230764,"about_ca_system_score_codex":0.00061561324,"about_ca_system_score_gemma":0.00023494376,"threshold_uncertainty_score":0.010400593},"labels":[],"label_agreement":null},{"id":"W2971965053","doi":"10.1007/s10142-019-00708-w","title":"Comparative analysis of integument transcriptomes identifies genes that participate in marking pattern formation in three allelic mutants of silkworm, Bombyx mori","year":2019,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Neurobiology and Insect Physiology Research","field":"Neuroscience","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Transcriptome; Genetics; Gene; KEGG; Mutant; Proteome; Bombyx mori; Phenotype; Gene expression","score_opus":0.09135724514579985,"score_gpt":0.32144632590306094,"score_spread":0.2300890807572611,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971965053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980159,0.00024689562,0.00047646367,0.000013690801,0.00000260319,0.000003923827,0.0010537403,0.000015164325,0.00017159646],"genre_scores_gemma":[0.99385095,0.00026858086,0.0012976103,0.000040787396,0.0000026820485,0.000019133227,0.0034172225,0.00001680341,0.001086105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999192,0.0000048904485,0.000007352461,0.0000337265,0.000018482287,0.000016289887],"domain_scores_gemma":[0.99992347,0.00001182849,0.000032020238,0.0000051856214,0.000008768685,0.000018606483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005400784,0.0002882363,0.00018083918,0.00036263312,0.00014970673,0.00020396769,0.000082301194,0.00014660634,0.00047447195],"category_scores_gemma":[0.00009946599,0.00011289283,0.00028283976,0.0003041255,0.00013356563,0.00012556241,0.0001697869,0.00019975654,0.00008521045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011722766,0.000009316299,0.0047011585,0.000028967497,0.0000121347175,0.000055876902,0.0000388358,0.000059356043,0.9936241,0.000021801243,0.000021830185,0.0013094727],"study_design_scores_gemma":[0.000009753456,0.0001826832,0.84317464,0.000010238636,0.00011150004,0.0005837239,0.00022098536,0.0018628266,0.15253972,0.00007445617,0.0012163743,0.000013067894],"about_ca_topic_score_codex":0.0009700126,"about_ca_topic_score_gemma":0.0011643553,"teacher_disagreement_score":0.0009700126,"about_ca_system_score_codex":0.00014855122,"about_ca_system_score_gemma":0.000116556235,"threshold_uncertainty_score":0.0019287467},"labels":[],"label_agreement":null},{"id":"W3016019886","doi":"10.1007/s10142-020-00738-9","title":"Use of gene expression profile to identify potentially relevant transcripts to myofibrillar fragmentation index trait","year":2020,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Meat and Animal Product Quality","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Transcriptome; Gene; Myosin; Myofibril; Gene expression; Tenderness; Gene expression profiling; RNA-Seq; Genetics; Candidate gene; Cell biology; Biochemistry; Food science","score_opus":0.08766335635264348,"score_gpt":0.2768514412925743,"score_spread":0.18918808493993078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016019886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9692221,0.0007419212,0.024323402,0.00010004881,0.00002828489,0.000089509726,0.00320858,0.0001670443,0.0021190092],"genre_scores_gemma":[0.9553802,0.0005698443,0.033053104,0.00024442966,0.00002472601,0.00022289941,0.0061009303,0.00005537088,0.0043484843],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989164,0.00000864159,0.000004948715,0.00005381493,0.00002084687,0.000020063313],"domain_scores_gemma":[0.9998535,0.0000550617,0.00003260553,0.000008918642,0.000026768577,0.000023032248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015737038,0.00030354355,0.00028520694,0.0005936974,0.00023436744,0.00032374283,0.0001349741,0.00023475187,0.0010373855],"category_scores_gemma":[0.00022558619,0.00013372798,0.00036419858,0.0006296592,0.00013578078,0.00014873818,0.00019355373,0.0004277201,0.00031777468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082481514,0.000019838388,0.0039808773,0.000025982541,0.000009871138,0.00003632346,0.00002549788,0.00007244342,0.99284333,0.00004194663,0.00002392567,0.0028374975],"study_design_scores_gemma":[0.00004036042,0.00063413277,0.3923561,0.000019522271,0.00022709915,0.00080816814,0.00028702206,0.0101195015,0.59160614,0.00040688377,0.0034576068,0.000037500977],"about_ca_topic_score_codex":0.0010811856,"about_ca_topic_score_gemma":0.0020419776,"teacher_disagreement_score":0.0010811856,"about_ca_system_score_codex":0.00018274346,"about_ca_system_score_gemma":0.00023268882,"threshold_uncertainty_score":0.0034704208},"labels":[],"label_agreement":null},{"id":"W3047820457","doi":"10.1007/s10142-020-00747-8","title":"Genome-wide characterization of the cellulose synthase gene superfamily in Pyrus bretschneideri and reveal its potential role in stone cell formation","year":2020,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Science Foundation of Anhui Province; China Postdoctoral Science Foundation","keywords":"Biology; Gene; Phylogenetic tree; Gene family; PEAR; Phylogenetics; Genetics; Arabidopsis; Genome; Cell wall; Botany; Mutant","score_opus":0.012978911088293481,"score_gpt":0.1690133852529358,"score_spread":0.1560344741646423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047820457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946467,0.00045483376,0.001402942,0.000068990645,0.00000573311,0.000018061679,0.0024152861,0.000046644294,0.00094079593],"genre_scores_gemma":[0.9868851,0.00035515305,0.0018287963,0.000077263314,0.0000069654457,0.000032024735,0.008132687,0.000028010285,0.0026540416],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999069,0.0000066630605,0.0000050293497,0.000035518853,0.000028227772,0.000017703074],"domain_scores_gemma":[0.99986076,0.000032973665,0.000032367087,0.000017072221,0.000017731152,0.000039018523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015455144,0.00022887715,0.00036839276,0.0009045718,0.00027492162,0.00028907927,0.00018935,0.00029363838,0.00070671836],"category_scores_gemma":[0.00014674872,0.0001721093,0.00037794223,0.00069182436,0.00020834465,0.00015201548,0.00037158147,0.00044422643,0.00031750332],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010199925,0.000026552909,0.0031889773,0.000038501035,0.000017150143,0.000047695292,0.000100996935,0.000091325135,0.99297345,0.00008366738,0.000043469987,0.0032861251],"study_design_scores_gemma":[0.00003922101,0.00024826836,0.89878803,0.000022942062,0.00013517855,0.0006629898,0.0003546949,0.0023904808,0.09063104,0.00029928298,0.0063971947,0.000030727813],"about_ca_topic_score_codex":0.003401471,"about_ca_topic_score_gemma":0.0047307797,"teacher_disagreement_score":0.003401471,"about_ca_system_score_codex":0.00025149542,"about_ca_system_score_gemma":0.000336238,"threshold_uncertainty_score":0.006763339},"labels":[],"label_agreement":null},{"id":"W3134666582","doi":"10.1007/s10142-021-00778-9","title":"Novel SCN5A variants identified in a group of Iranian Brugada syndrome patients","year":2021,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Cardiac electrophysiology and arrhythmias","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Bone and Joint Health Institute","funders":"","keywords":"Brugada syndrome; Frameshift mutation; Missense mutation; Proband; Nonsense; Biology; Nonsense mutation; Genetics; Sudden cardiac death; Sudden death; Internal medicine; Medicine; Exon; Mutation; Gene","score_opus":0.012612256477378075,"score_gpt":0.23094177279690525,"score_spread":0.21832951631952718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134666582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853146,0.000336689,0.00026262825,0.00009347639,0.000025517009,0.00001333623,0.00010570305,0.000008457659,0.00062280404],"genre_scores_gemma":[0.9991178,0.00011892932,0.00029814264,0.00008391377,0.00003294294,0.0000096728645,0.00017194738,0.0000047658004,0.00016186191],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997453,0.000028879116,0.00003796682,0.000102676946,0.000042369433,0.000042703206],"domain_scores_gemma":[0.99970573,0.00009899044,0.00009821672,0.000014959366,0.000025527777,0.000056628072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017813129,0.0010707169,0.00048099703,0.0011437627,0.00091339974,0.00046598085,0.00046381186,0.0008446203,0.0021976326],"category_scores_gemma":[0.0009481433,0.00018283288,0.00061695924,0.0006868093,0.0005380033,0.00026009046,0.00033774864,0.0003897599,0.00019461448],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019611304,0.00029048327,0.7010636,0.00013813785,0.0005456671,0.20025295,0.0032462154,0.0008919667,0.06771913,0.0013143291,0.0012984347,0.02127791],"study_design_scores_gemma":[0.000250543,0.00057382754,0.78577316,0.00008932057,0.0006003541,0.20356257,0.0017204608,0.0013635013,0.0022107244,0.001043165,0.0027449895,0.00006730861],"about_ca_topic_score_codex":0.0023887428,"about_ca_topic_score_gemma":0.0022193294,"teacher_disagreement_score":0.0023887428,"about_ca_system_score_codex":0.00020447903,"about_ca_system_score_gemma":0.00026500307,"threshold_uncertainty_score":0.007351756},"labels":[],"label_agreement":null},{"id":"W4220811643","doi":"10.1007/s10142-022-00839-7","title":"A zebrafish pparγ gene deletion reveals a protein kinase network associated with defective lipid metabolism","year":2022,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Zebrafish; Lipid metabolism; Protein kinase A; Peroxisome proliferator-activated receptor; Kinase; AKT3; Transcription factor; Lipid droplet; Cell biology; Phosphorylation; Protein kinase B; Gene; Endocrinology; Biochemistry; AKT1","score_opus":0.0085309451524826,"score_gpt":0.20247852178582926,"score_spread":0.19394757663334666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220811643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96965414,0.00080244173,0.01964856,0.0007244374,0.00012443836,0.00006910428,0.0028929105,0.0006188613,0.005465032],"genre_scores_gemma":[0.97357696,0.0006651699,0.007364891,0.00020113408,0.0000150025035,0.00008718684,0.0012221903,0.00021331086,0.016654149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998299,0.000009017194,0.000012661826,0.00006132926,0.0000573716,0.0000297443],"domain_scores_gemma":[0.9997769,0.000030621963,0.00010093126,0.000018214718,0.000015891417,0.000057480553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010560929,0.00093180244,0.00036743644,0.00096316915,0.0004374553,0.00032418853,0.000577342,0.000658969,0.004710876],"category_scores_gemma":[0.00016676675,0.0005613939,0.0006047918,0.00029451482,0.00082663324,0.00025024544,0.00052926654,0.001153236,0.0012623913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053443484,0.00000477951,0.00009928241,0.000015264895,0.00000500232,0.00030248877,0.000008717456,0.00014226256,0.9987207,0.0002674033,0.000056816934,0.00032386268],"study_design_scores_gemma":[0.00007996263,0.00010745433,0.012158598,0.00002569092,0.00008206978,0.0019014828,0.00008041505,0.0022566104,0.9799172,0.00040809088,0.0029562598,0.000025913367],"about_ca_topic_score_codex":0.006012178,"about_ca_topic_score_gemma":0.009942392,"teacher_disagreement_score":0.006012178,"about_ca_system_score_codex":0.00081703695,"about_ca_system_score_gemma":0.00076573907,"threshold_uncertainty_score":0.015759468},"labels":[],"label_agreement":null},{"id":"W4220913882","doi":"10.1007/s10142-022-00844-w","title":"Small genetic variation affecting mRNA isoforms associated with marbling and meat color in beef cattle","year":2022,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Marbled meat; Biology; Gene isoform; Phenotype; Beef cattle; Genetics; Transcriptome; Alternative splicing; Exon; Single-nucleotide polymorphism; Genetic variation; RNA-Seq; Messenger RNA; Gene; Gene expression; Genotype","score_opus":0.013987236832990389,"score_gpt":0.20648755769397759,"score_spread":0.1925003208609872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220913882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99942493,0.00005936266,0.00024034061,0.000016592612,0.0000064518813,0.0000024693736,0.000097082404,0.0000043368336,0.00014847737],"genre_scores_gemma":[0.9989041,0.000029080795,0.00026358984,0.000039778424,0.000009153925,0.000006539545,0.00018169121,0.000016551545,0.0005495625],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994924,0.00016723028,0.000028140532,0.00016786174,0.00006980722,0.00007449871],"domain_scores_gemma":[0.99890685,0.0005219775,0.00021377423,0.000038919523,0.000056415247,0.0002620376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067491503,0.00043714457,0.00036595843,0.000965214,0.0003878015,0.00041386476,0.00029799595,0.0005070357,0.0026712827],"category_scores_gemma":[0.0006352727,0.00026758868,0.0003416481,0.000550662,0.0006734886,0.00013053147,0.00026471342,0.00057776313,0.00021377094],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004530874,0.00023040033,0.06547866,0.000067313515,0.0004318198,0.0011076959,0.0008645135,0.00035674433,0.92257273,0.0003205076,0.00011033032,0.003928314],"study_design_scores_gemma":[0.00008920529,0.00039523296,0.987766,0.000012759054,0.00014978992,0.00072785333,0.00022937263,0.0007192721,0.009419488,0.000120919765,0.00035266948,0.000017410544],"about_ca_topic_score_codex":0.0035572895,"about_ca_topic_score_gemma":0.00464204,"teacher_disagreement_score":0.0035572895,"about_ca_system_score_codex":0.00027950658,"about_ca_system_score_gemma":0.00015422802,"threshold_uncertainty_score":0.008936286},"labels":[],"label_agreement":null},{"id":"W4224434399","doi":"10.1007/s10142-022-00861-9","title":"Toward the development of Ac/Ds transposon-mediated gene tagging system for functional genomics in oat (Avena sativa L.)","year":2022,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"","keywords":"Biology; Transposable element; Genome; Transposase; Genetics; Gene; Functional genomics; Genetically modified rice; Avena; Genomics; Transgene; Genetically modified crops; Botany","score_opus":0.03861495217610861,"score_gpt":0.20955416360095858,"score_spread":0.17093921142484997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224434399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5873824,0.0030559222,0.39666927,0.0014315555,0.00030737236,0.0010121136,0.0020784223,0.0017362606,0.006326679],"genre_scores_gemma":[0.6111364,0.004330515,0.36211038,0.00037775328,0.00006705749,0.00038193428,0.0071212784,0.00033337693,0.014141403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956197,0.00006264685,0.000052730902,0.00013452987,0.00013381368,0.000054226985],"domain_scores_gemma":[0.9997814,0.00002399509,0.00004304646,0.00003240686,0.000048169073,0.00007095124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010603645,0.00066603324,0.00049304916,0.00067408424,0.00040106595,0.0007765449,0.00093161734,0.00057526655,0.0011861721],"category_scores_gemma":[0.00029563083,0.0003882613,0.00068705616,0.00050552184,0.00046368563,0.00056731916,0.0008032562,0.0013409263,0.00092772214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027776194,0.000025976402,0.00023862386,0.000055730976,0.0000061946575,0.000046742225,0.000039993294,0.00012734836,0.99378043,0.00060600525,0.000068142115,0.0049770894],"study_design_scores_gemma":[0.0000613019,0.00063246774,0.004386874,0.00004553303,0.00012395103,0.0007012995,0.00016877543,0.0070720073,0.96446043,0.00062989205,0.021669682,0.00004775882],"about_ca_topic_score_codex":0.002868045,"about_ca_topic_score_gemma":0.003671035,"teacher_disagreement_score":0.002868045,"about_ca_system_score_codex":0.00068273675,"about_ca_system_score_gemma":0.0008443925,"threshold_uncertainty_score":0.005702734},"labels":[],"label_agreement":null},{"id":"W4250645126","doi":"10.1007/s10142-020-00748-7","title":"Correction to: Genome-wide characterization of the cellulose synthase gene superfamily in Pyrus bretschneideri and reveal its potential role in stone cell formation","year":2020,"lang":"en","type":"erratum","venue":"Functional & Integrative Genomics","topic":"Polysaccharides and Plant Cell Walls","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; SUPERFAMILY; Gene; Genome; Genetics; Computational biology; Cell","score_opus":0.010030525764227489,"score_gpt":0.17588089752684155,"score_spread":0.16585037176261405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4250645126","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00031111986,0.0005680626,0.0008869001,0.028682634,0.965247,0.000020086482,0.0018890883,0.00038449626,0.0020106873],"genre_scores_gemma":[0.02761966,0.007011802,0.010033081,0.0775696,0.38560694,0.00028017507,0.010069694,0.0033708238,0.47843826],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99838567,0.00022179786,0.00026253329,0.00030503664,0.0006544978,0.00017051141],"domain_scores_gemma":[0.9857621,0.0031332872,0.0007192485,0.0009006852,0.008279934,0.0012047058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020709538,0.0018721056,0.0014781506,0.0028359569,0.0024737713,0.0024550264,0.0024542804,0.003991935,0.058856297],"category_scores_gemma":[0.028246954,0.00087171275,0.0010048159,0.0016763605,0.0017099238,0.0015756411,0.0017334628,0.0065923384,0.031799138],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007459333,0.000009166561,0.00011816846,0.0001264764,0.000015222125,0.00036164254,0.000026817614,0.00006282125,0.00016795077,0.0005423058,0.99224687,0.0062479167],"study_design_scores_gemma":[0.00006773242,0.00002706656,0.0015929679,0.00017860967,0.00004697302,0.00077993446,0.00007341438,0.00031573765,0.0006873049,0.0012485684,0.99493694,0.00004465003],"about_ca_topic_score_codex":0.017129986,"about_ca_topic_score_gemma":0.016982371,"teacher_disagreement_score":0.058856297,"about_ca_system_score_codex":0.0027416525,"about_ca_system_score_gemma":0.0033177228,"threshold_uncertainty_score":0.19689393},"labels":[],"label_agreement":null},{"id":"W4293173736","doi":"10.1007/s10142-022-00893-1","title":"Unrevealing functional candidate genes for bovine fertility through RNA sequencing meta-analysis and regulatory elements networks of co-expressed genes and lncRNAs","year":2022,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Cancer-related molecular mechanisms research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Gene; Genetics; Candidate gene; Gene regulatory network; Computational biology; Regulatory sequence; Regulation of gene expression; Gene expression","score_opus":0.10326904140039758,"score_gpt":0.34760855164415483,"score_spread":0.24433951024375725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293173736","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00050160725,0.9978441,0.0006157055,0.00021946758,0.00010338115,0.000003758755,0.000095380245,0.000010295655,0.0006062474],"genre_scores_gemma":[0.003523117,0.9935183,0.0012893885,0.0004349556,0.00011910171,0.000010438371,0.00030363607,0.0000053458316,0.0007956532],"study_design_codex":"design_other","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9998362,0.000021764585,0.000018692432,0.00005676064,0.00005010088,0.0000164721],"domain_scores_gemma":[0.9996686,0.00018754581,0.00005293026,0.000009528932,0.00006321145,0.000018234608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008470365,0.00070604344,0.0011219783,0.0010521484,0.00015631394,0.0009132078,0.00066784606,0.0006535387,0.00176544],"category_scores_gemma":[0.00056784664,0.00023880956,0.00050465984,0.0012010902,0.0003659155,0.0005981623,0.0003661472,0.0009815121,0.00069166016],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016969419,0.000029322691,0.0013770112,0.015406874,0.0002608911,0.00031791453,0.000075956086,0.0005335869,0.014955243,0.0039750994,0.009371904,0.95352644],"study_design_scores_gemma":[0.00004485749,0.00019071532,0.008321881,0.0037053677,0.0011920653,0.002141048,0.00013663975,0.0003579239,0.00771453,0.004228907,0.9718973,0.00006884747],"about_ca_topic_score_codex":0.0014637699,"about_ca_topic_score_gemma":0.0032442391,"teacher_disagreement_score":0.00176544,"about_ca_system_score_codex":0.00061693543,"about_ca_system_score_gemma":0.0010488578,"threshold_uncertainty_score":0.005905926},"labels":[],"label_agreement":null},{"id":"W4312094031","doi":"10.1007/s10142-022-00929-6","title":"Comparison of genotyping by sequencing procedures to determine population genetic structure","year":2022,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of Lethbridge","funders":"Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Alberta Society of Professional Biologists","keywords":"Ion semiconductor sequencing; Biology; Genotyping; DNA sequencing; Genome; Genetics; Computational biology; Albatross; Illumina dye sequencing; Population; Reference genome; Genotype; Ecology; Gene","score_opus":0.021113502350369136,"score_gpt":0.2643989118164234,"score_spread":0.24328540946605426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312094031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6800505,0.0010332073,0.30739737,0.00029912486,0.0002845868,0.0009664105,0.0031629081,0.00060418947,0.0062017986],"genre_scores_gemma":[0.62461704,0.001066601,0.36056137,0.0006102277,0.000066056426,0.0011849478,0.007659027,0.00063828845,0.0035964795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98996174,0.005435225,0.00093566475,0.0014710284,0.0017192883,0.00047700244],"domain_scores_gemma":[0.9681211,0.020955574,0.0020785516,0.003674888,0.0045805364,0.0005893448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012945485,0.0010096082,0.0013564153,0.0042469376,0.0008373141,0.001025526,0.0013470234,0.0013298412,0.0015155785],"category_scores_gemma":[0.020643342,0.0007113283,0.0018662163,0.0020965221,0.00066879636,0.0005507221,0.0006530583,0.0017407467,0.00093619496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002237441,0.0010888837,0.03127668,0.00056866644,0.00083830656,0.0002517967,0.001630076,0.0031434307,0.8949018,0.002934962,0.00055391004,0.06057406],"study_design_scores_gemma":[0.0003132298,0.0030396704,0.37115288,0.00016346235,0.0025592186,0.0017881191,0.0005583536,0.023145085,0.5833714,0.003423418,0.010278642,0.00020648901],"about_ca_topic_score_codex":0.0028328313,"about_ca_topic_score_gemma":0.004591435,"teacher_disagreement_score":0.012945485,"about_ca_system_score_codex":0.0007228729,"about_ca_system_score_gemma":0.0010061647,"threshold_uncertainty_score":0.06846309},"labels":[],"label_agreement":null},{"id":"W4353017186","doi":"10.1007/s10142-023-01013-3","title":"Pilot study of a comprehensive resource estimation method from environmental DNA using universal D-loop amplification primers","year":2023,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; University of Tokyo","keywords":"Biology; Nanopore sequencing; Computational biology; Haplotype; DNA sequencing; Mitochondrial DNA; Genome; Genetics; Gene; Genotype","score_opus":0.05959332225314292,"score_gpt":0.2662182329459461,"score_spread":0.20662491069280317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4353017186","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14779922,0.0015245401,0.8383797,0.00034302985,0.00024899922,0.0024227502,0.0034721293,0.0027113277,0.003098399],"genre_scores_gemma":[0.0917222,0.00045169442,0.89948446,0.0004305994,0.000039406415,0.0013624384,0.00454,0.00029824846,0.0016709486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9955171,0.0008232596,0.00032795133,0.0020612772,0.0009069857,0.00036344636],"domain_scores_gemma":[0.9973889,0.0009659194,0.00027435424,0.00025588655,0.0009293099,0.00018572112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0048546223,0.001671082,0.0012416979,0.0018228447,0.00071691186,0.0010643653,0.0013875775,0.0012843405,0.0023706723],"category_scores_gemma":[0.005515909,0.0011526726,0.001501063,0.00094789086,0.0008511105,0.0011630434,0.0013921978,0.0017481344,0.0016702445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038405944,0.00038997733,0.012789505,0.00092444837,0.000191362,0.00031227566,0.0006493294,0.0029290172,0.89429253,0.0018301966,0.0014718868,0.08383536],"study_design_scores_gemma":[0.00023395978,0.0022848377,0.028224923,0.00029372008,0.0006994237,0.0017033805,0.00049375347,0.067504585,0.84983325,0.0024502892,0.04595035,0.0003274913],"about_ca_topic_score_codex":0.0022013779,"about_ca_topic_score_gemma":0.004821082,"teacher_disagreement_score":0.0048546223,"about_ca_system_score_codex":0.00062265294,"about_ca_system_score_gemma":0.0017830475,"threshold_uncertainty_score":0.025673985},"labels":[],"label_agreement":null},{"id":"W4384119766","doi":"10.1007/s10142-023-01172-3","title":"Structural diversity and stress regulation of the plant immunity-associated CALMODULIN-BINDING PROTEIN 60 (CBP60) family of transcription factors in Solanum lycopersicum (tomato)","year":2023,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Biology; Arabidopsis; Pseudomonas syringae; Arabidopsis thaliana; Genetics; Gene family; Transcription factor; Abiotic stress; Solanum; Effector; Gene; Protein family; Plant Immunity; Cell biology; Botany; Genome; Mutant","score_opus":0.03921354857351338,"score_gpt":0.20606219391086597,"score_spread":0.16684864533735258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384119766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824,0.0004905966,0.00059067906,0.0000400552,0.0000071070062,0.0000035630403,0.00016441468,0.000013405775,0.00045018166],"genre_scores_gemma":[0.99840766,0.00012386717,0.00027483018,0.000052174026,0.000005807816,0.0000049357645,0.00043466064,0.00001118182,0.0006848764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992275,0.0000060627517,0.000004864687,0.000031286258,0.000017384336,0.00001756656],"domain_scores_gemma":[0.99988616,0.00001667303,0.00002838332,0.0000103506445,0.000016153432,0.000042215226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009010657,0.000114050476,0.00026631102,0.00031906547,0.00017762349,0.00020017773,0.00017799376,0.0002183607,0.000913875],"category_scores_gemma":[0.00012687767,0.00013777018,0.00023073275,0.0001535873,0.00018396691,0.00018878035,0.00024712164,0.0003773317,0.00034166992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005538605,0.0000101388305,0.00050230045,0.000008174174,0.0000028509246,0.000022177619,0.0000220234,0.000017764443,0.9986191,0.00007005406,0.000018676868,0.00065146637],"study_design_scores_gemma":[0.0001028545,0.00036434078,0.52979267,0.000020860238,0.000083669496,0.001863716,0.0003196823,0.004469579,0.4571634,0.0009831424,0.004800174,0.00003587454],"about_ca_topic_score_codex":0.0008557408,"about_ca_topic_score_gemma":0.00095932226,"teacher_disagreement_score":0.000913875,"about_ca_system_score_codex":0.0002107321,"about_ca_system_score_gemma":0.00012237162,"threshold_uncertainty_score":0.0030572414},"labels":[],"label_agreement":null},{"id":"W4385295271","doi":"10.1007/s10142-023-01177-y","title":"Identification and characterization of RuvBL DNA helicase genes for tolerance against abiotic stresses in bread wheat (Triticum aestivum L.) and related species","year":2023,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Genetic and Mutation Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Gene; Genetics; In silico; Abiotic stress; Genome","score_opus":0.02360526665487523,"score_gpt":0.2247116103354466,"score_spread":0.20110634368057137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385295271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99500126,0.0006690874,0.0024589351,0.00006437856,0.000013332113,0.0000289288,0.0011416755,0.00004084407,0.00058152474],"genre_scores_gemma":[0.9905579,0.0002946005,0.001746009,0.00008649444,0.000007746936,0.000025286901,0.0052303644,0.000029666528,0.0020218212],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999273,0.000008371001,0.000008509688,0.000025759135,0.000013520132,0.000016621769],"domain_scores_gemma":[0.99986637,0.000028463373,0.000038789673,0.000014743258,0.000019106634,0.000032643566],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013374712,0.00024259338,0.0002845741,0.0005435458,0.00018014373,0.00027386603,0.00021777791,0.00021956135,0.00072345353],"category_scores_gemma":[0.00013944169,0.00017473217,0.00035065398,0.00026776528,0.00016639047,0.00014346438,0.00018653463,0.00037796277,0.00033687908],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005219752,0.000011841505,0.0005549142,0.0000216702,0.0000046643486,0.00004012112,0.000054139316,0.000020609768,0.99792886,0.000046245317,0.000021047648,0.0012436982],"study_design_scores_gemma":[0.00012784035,0.0007166531,0.38813907,0.000054154345,0.0002497539,0.002248997,0.0007278739,0.0033175852,0.5859784,0.00032578962,0.018064603,0.00004940223],"about_ca_topic_score_codex":0.0015669469,"about_ca_topic_score_gemma":0.002204361,"teacher_disagreement_score":0.0015669469,"about_ca_system_score_codex":0.00022545934,"about_ca_system_score_gemma":0.00015820825,"threshold_uncertainty_score":0.003115654},"labels":[],"label_agreement":null},{"id":"W4401627124","doi":"10.1007/s10142-024-01417-9","title":"The impact and future of artificial intelligence in medical genetics and molecular medicine: an ongoing revolution","year":2024,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Genetics, Bioinformatics, and Biomedical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Medical genetics; Precision medicine; Computational biology; Engineering ethics; Genetics; Engineering; Gene","score_opus":0.0327191091706601,"score_gpt":0.3631079029093421,"score_spread":0.33038879373868196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401627124","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000041788684,0.9963321,0.00020690104,0.0021031415,0.00046091675,0.0000014085506,0.000010056637,0.000007797239,0.0008359339],"genre_scores_gemma":[0.00061058893,0.9963458,0.00034391286,0.0014490468,0.0008273201,0.000004060392,0.000022761153,0.0000030842614,0.00039350204],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992867,0.00021647917,0.00005357188,0.0000748778,0.0003084863,0.000059845992],"domain_scores_gemma":[0.9970439,0.0020760873,0.00016165662,0.00007121148,0.00045029706,0.00019674837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026573401,0.0011292251,0.0018229549,0.0021802771,0.00043847234,0.0030192665,0.0014731403,0.003229094,0.0053304126],"category_scores_gemma":[0.0032881128,0.00027663514,0.0006387825,0.0034584291,0.0023850582,0.0055469573,0.0017631953,0.0047958065,0.0022793273],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012681032,0.000050725404,0.00014752809,0.012453157,0.000101493344,0.00014553982,0.0001169104,0.00056806835,0.0008506715,0.032738063,0.088652655,0.8640484],"study_design_scores_gemma":[0.000019305553,0.000033752007,0.00031345975,0.003404688,0.0000511606,0.00029059403,0.00009799925,0.00013870918,0.00009665028,0.017370077,0.9781626,0.000021096062],"about_ca_topic_score_codex":0.0016068575,"about_ca_topic_score_gemma":0.0026595439,"teacher_disagreement_score":0.0053304126,"about_ca_system_score_codex":0.0016865509,"about_ca_system_score_gemma":0.0032835777,"threshold_uncertainty_score":0.017831981},"labels":[],"label_agreement":null},{"id":"W4407594816","doi":"10.1007/s10142-025-01551-y","title":"Deciphering nutrient stress in plants: integrative insight from metabolomics and proteomics","year":2025,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Plant nutrient uptake and metabolism","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Metabolomics; Proteomics; Computational biology; Nutrient; Bioinformatics; Ecology; Genetics; Gene","score_opus":0.033432601106544155,"score_gpt":0.24998139492058274,"score_spread":0.21654879381403858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407594816","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000099457335,0.9987557,0.00035639264,0.00022845439,0.00008862806,0.0000029476523,0.00002615886,0.000007840723,0.00043439065],"genre_scores_gemma":[0.0004313619,0.99885595,0.00028270198,0.00012965822,0.00010364588,0.0000030866843,0.000036456902,0.0000010910145,0.00015603862],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99981743,0.000023411047,0.000016799857,0.000043905973,0.00007560517,0.000022889568],"domain_scores_gemma":[0.9994937,0.00023924434,0.00006344497,0.00001750131,0.00013559306,0.000050569717],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001081962,0.001401198,0.0021330186,0.002564264,0.00023672823,0.0015485436,0.0010713296,0.0015614459,0.0020366507],"category_scores_gemma":[0.0009281487,0.00032783614,0.0006073568,0.00318406,0.0005943103,0.0021008903,0.0010998417,0.0016983002,0.001385367],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009745837,0.000054499695,0.00024272299,0.017289635,0.00019973714,0.00014752758,0.0000358055,0.0005946119,0.0057739615,0.004180927,0.015712334,0.95567083],"study_design_scores_gemma":[0.000028241975,0.00012666619,0.002137925,0.004968557,0.00044575188,0.0010022824,0.00011040406,0.00043317868,0.002440622,0.0073508285,0.9808919,0.00006360605],"about_ca_topic_score_codex":0.0014612045,"about_ca_topic_score_gemma":0.0024539323,"teacher_disagreement_score":0.002564264,"about_ca_system_score_codex":0.00073708745,"about_ca_system_score_gemma":0.0014901806,"threshold_uncertainty_score":0.0068132877},"labels":[],"label_agreement":null},{"id":"W4409086165","doi":"10.1007/s10142-025-01588-z","title":"Metabolic engineering of lipids for crop resilience and nutritional improvements towards sustainable agriculture","year":2025,"lang":"en","type":"review","venue":"Functional & Integrative Genomics","topic":"Lipid metabolism and biosynthesis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"","keywords":"Biology; Biotechnology; Abiotic stress; Abiotic component; Sustainable agriculture; Food security; Agriculture; Crop; Metabolic engineering; Resistance (ecology); Lipid metabolism; Resilience (materials science); Agronomy; Ecology; Biochemistry; Enzyme","score_opus":0.00996873290867747,"score_gpt":0.2542963846865811,"score_spread":0.24432765177790364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409086165","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022636219,0.9972584,0.000709321,0.00022154467,0.00018236529,0.0000053657113,0.00003726638,0.000013291286,0.0013461381],"genre_scores_gemma":[0.00092772377,0.9975356,0.0005111628,0.00009786453,0.00007017353,0.0000060176462,0.00005435415,0.0000026671685,0.00079442863],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998411,0.000020051146,0.000014168985,0.00003071208,0.00006601572,0.000027879254],"domain_scores_gemma":[0.9998248,0.00007018682,0.0000296579,0.000008298229,0.00004209754,0.000025021063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064017205,0.0012560466,0.0013294213,0.0017794584,0.00022664346,0.0012626859,0.0009330128,0.00096648996,0.0032724084],"category_scores_gemma":[0.0004851433,0.00035209453,0.00045678767,0.0027520368,0.00042280098,0.001207934,0.0011057626,0.0013953808,0.0020524168],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010279849,0.00008383529,0.00009142512,0.014270804,0.00010176532,0.00015153995,0.000033578006,0.0008122946,0.011756107,0.0067585753,0.016373068,0.94946414],"study_design_scores_gemma":[0.000016399314,0.00007000982,0.0004115463,0.00202112,0.00012614887,0.00034999903,0.00003340566,0.00019112925,0.0028533118,0.002915121,0.990989,0.000022653185],"about_ca_topic_score_codex":0.0011682287,"about_ca_topic_score_gemma":0.0021452866,"teacher_disagreement_score":0.0032724084,"about_ca_system_score_codex":0.00072736,"about_ca_system_score_gemma":0.0010323997,"threshold_uncertainty_score":0.010947287},"labels":[],"label_agreement":null},{"id":"W7116660675","doi":"10.1007/s10142-025-01781-0","title":"Genome-wide identification of peroxidase genes and functional analysis of MtPRX76 on lignin synthesis in Medicago truncatula","year":2025,"lang":"en","type":"article","venue":"Functional & Integrative Genomics","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"National Natural Science Foundation of China","keywords":"Medicago truncatula; Gene; Transcriptome; Phenylpropanoid; Mutant; KEGG; Gene expression; Lignin; Gene family","score_opus":0.008871017900864428,"score_gpt":0.24194501822737394,"score_spread":0.23307400032650952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7116660675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982632,0.00023540681,0.00034700922,0.000022942624,0.0000031514342,0.0000044314274,0.0007368048,0.000017563983,0.0003694609],"genre_scores_gemma":[0.99284196,0.0002335733,0.00065622333,0.00004606477,0.0000029510807,0.000008927909,0.0024962788,0.00001191598,0.0037021008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99993217,0.000004622144,0.000003831709,0.000029490919,0.000016137607,0.000013854767],"domain_scores_gemma":[0.9999498,0.000010741237,0.000013462884,0.0000064504943,0.0000049487476,0.000014485654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007967711,0.0002773561,0.0002079751,0.00030962596,0.00018694112,0.00018870638,0.00017487585,0.00022651684,0.00079764414],"category_scores_gemma":[0.000064309424,0.00013015227,0.00026898706,0.00028004753,0.00013177357,0.00009838232,0.00023721783,0.00026793024,0.00025179007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008269842,0.000009478152,0.0006268985,0.00001547175,0.0000051221673,0.000027247595,0.000020524749,0.0000381089,0.998412,0.000042362346,0.000017163502,0.0007028759],"study_design_scores_gemma":[0.000042144697,0.0003162143,0.48451668,0.00001691841,0.00012612597,0.0005714423,0.00021463828,0.0024561086,0.506024,0.0002133082,0.005481043,0.000021380758],"about_ca_topic_score_codex":0.0015870543,"about_ca_topic_score_gemma":0.0026824714,"teacher_disagreement_score":0.0015870543,"about_ca_system_score_codex":0.00022030767,"about_ca_system_score_gemma":0.00011965173,"threshold_uncertainty_score":0.003155589},"labels":[],"label_agreement":null}]}