{"meta":{"query_hash":"dfb9885fdc22","filters":{"venue":"Fungal Diversity"},"cohort_total":49,"direct_labels_cover":0,"predictions_cover":49,"exported":49,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/dfb9885fdc22","api":"https://metacan.xera.ac/api/v1/cohort?venue=Fungal+Diversity"},"results":[{"id":"W1617612940","doi":"10.1007/s13225-015-0345-6","title":"Phylogenetic insights resolve Dacampiaceae (Pleosporales) as polyphyletic: Didymocyrtis (Pleosporales, Phaeosphaeriaceae) with Phoma-like anamorphs resurrected and segregated from Polycoccum (Trypetheliales, Polycoccaceae fam. nov.)","year":2015,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Museum of Nature","funders":"","keywords":"Polyphyly; Biology; Phoma; Dothideomycetes; Botany; Genus; Pycnidium; Conidium; Evolutionary biology; Phylogenetic tree; Genetics; Clade","score_opus":0.02061189731318834,"score_gpt":0.19116875333824257,"score_spread":0.17055685602505422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1617612940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99145555,0.003465907,0.000006263552,0.00090030354,0.0006858486,0.00068171584,0.0010140152,0.0003147862,0.00147562],"genre_scores_gemma":[0.9957809,0.00021257506,0.0004562037,0.0009802189,0.00044986873,0.000011818069,0.00084465434,0.000010719133,0.0012530696],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99611795,0.00042355532,0.0004741514,0.0012832767,0.00074497925,0.0009560594],"domain_scores_gemma":[0.9976455,0.00028269083,0.0003644254,0.00034064057,0.00033237773,0.0010343667],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028786206,0.0006833601,0.00080335414,0.0000738175,0.0009295065,0.00016286326,0.00082179205,0.0005250282,0.00078874914],"category_scores_gemma":[0.00013778674,0.00034531503,0.00016092492,0.00096187496,0.0006219207,0.0004037028,0.0011926309,0.0005639316,0.00029463362],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031228196,0.0004943055,0.9336945,0.000015972344,0.00028213867,0.0006245226,0.0019487126,0.0000074356735,0.045939926,0.00022359933,0.007634925,0.0060111703],"study_design_scores_gemma":[0.0024829388,0.0017024559,0.9644355,0.000053269516,0.00020582227,0.00006710919,0.0019159629,0.0000918254,0.0029491917,0.0005576291,0.024538783,0.0009994968],"about_ca_topic_score_codex":0.025823532,"about_ca_topic_score_gemma":0.016568365,"teacher_disagreement_score":0.042990733,"about_ca_system_score_codex":0.00016484933,"about_ca_system_score_gemma":0.00012757586,"threshold_uncertainty_score":0.99989986},"labels":[],"label_agreement":null},{"id":"W1928057741","doi":"10.1007/s13225-015-0351-8","title":"The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts","year":2015,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":716,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Royal Ontario Museum; University of Toronto","funders":"","keywords":"Herbarium; Metadata; Database; Taxonomic rank; Taxonomy (biology); Phylogenetic tree; Information retrieval; Biology; Computer science; Ecology; World Wide Web; Taxon","score_opus":0.029812304147324515,"score_gpt":0.2241575576893419,"score_spread":0.19434525354201737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1928057741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99427897,0.001091483,0.0000015376719,0.00020327976,0.00013024444,0.0001272716,0.0023370457,0.000027949856,0.0018022066],"genre_scores_gemma":[0.9988777,0.00025177829,0.000034841563,0.00006213717,0.00008813019,0.000001395018,0.0003545548,5.5035287e-7,0.00032890722],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923164,0.0000815751,0.00010295287,0.0001836987,0.00018793413,0.0002121817],"domain_scores_gemma":[0.9989981,0.00058599625,0.00009017153,0.00006975866,0.000097227254,0.00015875862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023109265,0.00011209535,0.0001373797,0.000010273446,0.00067698373,0.000039931067,0.00024399806,0.000061105675,0.0003028315],"category_scores_gemma":[0.0000676448,0.00003693571,0.000038468148,0.00012815898,0.000059633225,0.00015401246,0.00035586156,0.00014763344,0.00004863439],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021265373,0.000046750953,0.8933816,0.0000054272277,0.000039919756,0.000021111398,0.00016986298,0.0000014931633,0.09045436,0.00082801084,0.013797515,0.0010412777],"study_design_scores_gemma":[0.00020697969,0.0009612108,0.97433174,0.00003954494,0.00007228782,0.00011191864,0.0019328687,0.000024609199,0.0029643495,0.00026735532,0.018853456,0.00023371013],"about_ca_topic_score_codex":0.0046252483,"about_ca_topic_score_gemma":0.0019826018,"teacher_disagreement_score":0.087490015,"about_ca_system_score_codex":0.0000135856035,"about_ca_system_score_gemma":0.00001027808,"threshold_uncertainty_score":0.69920224},"labels":[],"label_agreement":null},{"id":"W1973932940","doi":"10.1007/s13225-011-0110-4","title":"Characterization of fungal pathogens associated with grapevine trunk diseases in Arkansas and Missouri","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, Davis","keywords":"Botryosphaeria; Biology; Botryosphaeria dothidea; Lasiodiplodia theobromae; Botany; Pestalotiopsis; Vineyard; Phomopsis; Canker; Horticulture","score_opus":0.013589695485637633,"score_gpt":0.17540389319909128,"score_spread":0.16181419771345365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973932940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957927,0.00017096517,0.000049657574,0.0000052449327,0.00003275228,0.00012306347,0.0035537295,0.000010227577,0.00026168872],"genre_scores_gemma":[0.9989006,0.00011853139,0.000031999294,0.00004594693,0.000022533148,0.000002589509,0.00079111155,0.000007894704,0.000078823745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99929357,0.00006227476,0.00011546189,0.000244903,0.00011472705,0.00016906376],"domain_scores_gemma":[0.99959743,0.0000089768955,0.00009354794,0.00012971865,0.00006344363,0.000106904525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006485171,0.00012725157,0.00016152211,0.000055091394,0.00008690639,0.000005672836,0.000099077755,0.0000841001,0.00003444229],"category_scores_gemma":[0.000049506347,0.00011617441,0.000051222036,0.00010367977,0.000076666314,0.00001019658,0.00016020365,0.000046213936,0.0000011018432],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031475077,0.00017196205,0.6433301,0.0000143363495,0.000039530547,0.00003925449,0.00008680565,4.487875e-7,0.35585737,0.0000139144095,0.000018132496,0.000113362075],"study_design_scores_gemma":[0.00058717385,0.0002803337,0.98838264,0.000031955915,0.000088042914,0.000005711095,0.00004536043,0.000013582482,0.01034796,0.000010741335,0.000055946726,0.00015055647],"about_ca_topic_score_codex":0.000033265493,"about_ca_topic_score_gemma":0.00009221345,"teacher_disagreement_score":0.3455094,"about_ca_system_score_codex":0.000008323405,"about_ca_system_score_gemma":0.00002653387,"threshold_uncertainty_score":0.47374547},"labels":[],"label_agreement":null},{"id":"W1991871837","doi":"10.1007/s13225-013-0244-7","title":"Dothiorella vidmadera, a novel species from grapevines in Australia and notes on Spencermartinsia","year":2013,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Grape and Wine Research and Development Corporation","keywords":"Biology; Botany; Phylogenetic tree; Mycology; Genus; Hypocreales; Internal transcribed spacer; Taxonomy (biology); Ascomycota; Gene; Genetics","score_opus":0.032522192824066654,"score_gpt":0.22774833541840742,"score_spread":0.19522614259434076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991871837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816394,0.00011914942,0.000023853885,0.00010476516,0.00008680073,0.00013024545,0.000934686,0.000007935938,0.00042861103],"genre_scores_gemma":[0.99880517,0.0000696067,0.00015126457,0.00028992252,0.000113322814,0.0000030110025,0.00014392729,0.0000048855213,0.00041889888],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992861,0.000022265936,0.00009423679,0.00030108163,0.00010902765,0.00018730003],"domain_scores_gemma":[0.9996609,0.000029495788,0.000035700134,0.00014387476,0.000028623852,0.00010138676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000034843426,0.00013924569,0.00012381669,0.000037657595,0.000105956984,0.00003716456,0.00012376925,0.000093505114,0.00022750601],"category_scores_gemma":[0.000052154595,0.00012358972,0.000053958833,0.00005088481,0.00006956842,0.000009161025,0.00027817918,0.00007295373,0.00007856334],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050590843,0.000060730676,0.50689995,0.0000049858777,0.000014115982,0.000009803809,0.00003166592,0.0000063189937,0.4912153,0.00004269565,0.001573613,0.000090238165],"study_design_scores_gemma":[0.00039014578,0.00009211318,0.98352027,0.000017620863,0.000015473564,0.000002423176,0.000042492065,0.000029242625,0.014226375,0.00007309733,0.0014254043,0.00016533257],"about_ca_topic_score_codex":0.0015457884,"about_ca_topic_score_gemma":0.00022648624,"teacher_disagreement_score":0.4769889,"about_ca_system_score_codex":0.000008386624,"about_ca_system_score_gemma":0.000009148274,"threshold_uncertainty_score":0.5039843},"labels":[],"label_agreement":null},{"id":"W2008371172","doi":"10.1007/s13225-015-0321-1","title":"Dismantling Melaspileaceae: a first phylogenetic study of Buelliella, Hemigrapha, Karschia, Labrocarpon and Melaspilea","year":2015,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Polar Knowledge Canada","keywords":"Polyphyly; Dothideomycetes; Biology; Phylogenetic tree; Genus; Taxon; Zoology; Phylogenetics; Ascomycota; Taxonomy (biology); Evolutionary biology; Botany; Clade","score_opus":0.03486547545023166,"score_gpt":0.1961790597791686,"score_spread":0.16131358432893694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008371172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99767756,0.00047932027,9.235326e-7,0.00010677839,0.00017904713,0.0002842952,0.000042139676,0.000037902395,0.0011920293],"genre_scores_gemma":[0.9996073,0.00005860036,0.000025126625,0.00007037816,0.00009117166,0.0000037685218,0.000009673673,9.882544e-7,0.00013295398],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988344,0.00009696541,0.00018124869,0.0003412257,0.00024972847,0.0002964591],"domain_scores_gemma":[0.9993451,0.00014002172,0.00010662187,0.0000761536,0.00009007436,0.00024200026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022272677,0.00015527583,0.00027187946,0.000021590307,0.00035589345,0.000020508996,0.00027909214,0.00011202423,0.00010830101],"category_scores_gemma":[0.000058509606,0.0000739976,0.000063129,0.00026381228,0.000091769354,0.00008413354,0.0006822289,0.00014101666,0.000028197403],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011611677,0.00039826107,0.9912663,0.000009863012,0.000044457312,0.000014639804,0.0018558162,0.000013514249,0.0040112175,0.00006522335,0.0006129146,0.0015916534],"study_design_scores_gemma":[0.0007298046,0.001893255,0.9878512,0.000008286761,0.000078659585,0.000006203014,0.0066227806,0.00006563663,0.0006206989,0.000201028,0.001712093,0.00021033318],"about_ca_topic_score_codex":0.002301995,"about_ca_topic_score_gemma":0.0068164803,"teacher_disagreement_score":0.0047669644,"about_ca_system_score_codex":0.0000241042,"about_ca_system_score_gemma":0.0000073846772,"threshold_uncertainty_score":0.3803756},"labels":[],"label_agreement":null},{"id":"W2018087746","doi":"10.1007/s13225-014-0280-y","title":"Phylogeny and taxonomic revision of Thelonectria discophora (Ascomycota, Hypocreales, Nectriaceae) species complex","year":2014,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Universidad de Costa Rica; National Science Foundation","keywords":"Hypocreales; Biology; Monophyly; Species complex; Chlamydospore; Taxonomy (biology); Botany; Phylogenetic tree; Phylogenetics; PhyloCode; Conidium; Cladistics; Ascomycota; Zoology; Evolutionary biology; Clade","score_opus":0.025280339242659974,"score_gpt":0.19108452543047982,"score_spread":0.16580418618781984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018087746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901292,0.00023392247,0.000015969183,0.00017206151,0.00016727262,0.00015231335,0.0011230918,0.000025772293,0.007980432],"genre_scores_gemma":[0.99840075,0.0007310596,0.00009324666,0.00006515397,0.00012307246,4.1851823e-7,0.0002860737,4.9854117e-7,0.00029972073],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992832,0.00010848245,0.00013780525,0.00020492046,0.00010620507,0.00015940981],"domain_scores_gemma":[0.9988036,0.0009329159,0.00009957686,0.000060607625,0.000033960434,0.000069329784],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018163472,0.00011194248,0.00021291414,0.000015094702,0.00036692523,0.000028441082,0.00018804935,0.000054569307,0.0024418682],"category_scores_gemma":[0.000097353906,0.000049255337,0.000087560315,0.00011537629,0.000020950152,0.000089978384,0.00026766415,0.000094183284,0.00014779513],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021864989,0.00008095194,0.44148657,0.000022606302,0.000031596694,0.000002072136,0.000076010234,0.000003485197,0.50145906,0.003081201,0.03414685,0.019390922],"study_design_scores_gemma":[0.00012302438,0.00027297845,0.8432545,0.00004444289,0.000038195256,0.000011584432,0.00014849867,0.00013244359,0.0028918413,0.00032541974,0.15257464,0.00018242486],"about_ca_topic_score_codex":0.0017288694,"about_ca_topic_score_gemma":0.00013621364,"teacher_disagreement_score":0.49856725,"about_ca_system_score_codex":0.000014596,"about_ca_system_score_gemma":0.000002757487,"threshold_uncertainty_score":0.99847},"labels":[],"label_agreement":null},{"id":"W2028231189","doi":"10.1007/s13225-011-0097-x","title":"The phylogenetic position of the lichenicolous ascomycete Capronia peltigerae","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brandon University","funders":"","keywords":"Biology; Phylogenetic tree; Polyphyly; Lichen; Ribosomal RNA; Phylogenetics; Lineage (genetic); Evolutionary biology; Botany; Genetics; Gene; Clade","score_opus":0.024944732021531538,"score_gpt":0.16802086254119916,"score_spread":0.1430761305196676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028231189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937358,0.00011677321,3.4389643e-7,0.00041788732,0.00026886523,0.00016783958,0.000032735763,0.000017191045,0.0052425913],"genre_scores_gemma":[0.99932116,0.000018254294,0.00001310705,0.00020624817,0.000063392225,0.0000026461807,0.0000026584962,3.5885253e-7,0.00037216258],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992987,0.0001250884,0.00010340291,0.00014094159,0.000134799,0.00019708379],"domain_scores_gemma":[0.999623,0.00010291857,0.000087179505,0.000082804065,0.000059028243,0.000045091685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016968214,0.000076960016,0.00009015033,0.0000030925835,0.00088597345,0.000011093747,0.0005110939,0.00007659878,0.00030675315],"category_scores_gemma":[0.000027752278,0.000021999576,0.00011061364,0.00013915265,0.00016249038,0.00003865002,0.00055525586,0.00011350323,0.000044401757],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103322476,0.000117793985,0.90524566,0.0000039372476,0.00004023713,0.0000031693137,0.0008264722,6.100909e-7,0.0832253,0.001362115,0.0010133116,0.008058097],"study_design_scores_gemma":[0.00007374637,0.00017476731,0.9905126,0.0000022513434,0.000022793456,0.0000034939364,0.00017187578,0.000006143939,0.0071746004,0.0006786965,0.0011173621,0.0000616657],"about_ca_topic_score_codex":0.0008141522,"about_ca_topic_score_gemma":0.0013145433,"teacher_disagreement_score":0.08526697,"about_ca_system_score_codex":0.000023123814,"about_ca_system_score_gemma":0.0000079116735,"threshold_uncertainty_score":0.6814281},"labels":[],"label_agreement":null},{"id":"W2028724578","doi":"10.1007/s13225-013-0259-0","title":"Molecular phylogeny, morphology, pigment chemistry and ecology in Hygrophoraceae (Agaricales)","year":2013,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Royal Ontario Museum","funders":"State University of New York Cortland; U.S. Forest Service; Natural England; Scottish Natural Heritage; International Institute of Tropical Forestry; State University of New York; Department for Environment, Food and Rural Affairs, UK Government; U.S. Department of Agriculture; University of Tennessee, Knoxville; National Geographic Society; National Science Foundation","keywords":"Subgenus; Biology; Subfamily; Genus; Zoology; Molecular phylogenetics; Agaricales; Phylogenetics; Morphology (biology); Clade; Systematics; Tribe; Taxonomy (biology); Ecology; Botany; Evolutionary biology; Anthropology; Gene","score_opus":0.0070987164105645656,"score_gpt":0.17375831419729712,"score_spread":0.16665959778673256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028724578","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960909,0.000139729,0.000001434307,0.0005700585,0.00008725051,0.00013422058,0.00020103768,0.000021876724,0.002753525],"genre_scores_gemma":[0.9991332,0.00013757948,0.000033727818,0.00031266492,0.000036140154,0.0000066583993,0.00012676045,3.6569944e-7,0.00021288962],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99936813,0.000045413974,0.00008961659,0.00022108186,0.00007292931,0.00020283919],"domain_scores_gemma":[0.9995562,0.00025375022,0.000032133645,0.000035806082,0.000027075579,0.00009504842],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00005948817,0.000091457434,0.00011852756,0.000006377103,0.0001638171,0.000020704563,0.00014052543,0.0001090663,0.007710234],"category_scores_gemma":[0.000040614043,0.000043847784,0.000039270937,0.0001031278,0.000017314936,0.00006924726,0.00034562827,0.00015331911,0.000506367],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014088749,0.00006299534,0.580114,0.0000033285698,0.0000066844877,0.0000453459,0.000024292367,0.0000038505464,0.4154707,0.000047966507,0.0029287385,0.0012780137],"study_design_scores_gemma":[0.000072934876,0.00008209442,0.99139404,0.0000066816006,0.000010443086,0.000047088077,0.00017050626,0.00012451534,0.004586806,0.00056171947,0.0027895651,0.00015360132],"about_ca_topic_score_codex":0.002894808,"about_ca_topic_score_gemma":0.00011867762,"teacher_disagreement_score":0.41128004,"about_ca_system_score_codex":0.000028101153,"about_ca_system_score_gemma":0.0000026999514,"threshold_uncertainty_score":0.99319685},"labels":[],"label_agreement":null},{"id":"W2035092917","doi":"10.1007/s13225-011-0104-2","title":"Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales)","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Crohn's and Colitis Foundation of Canada","keywords":"Hypocreales; Biology; Phylogenetic tree; Type species; Genus; Botany; PhyloCode; Phylogenetics; Zoology; Evolutionary biology; Ascomycota; Cladistics; Genetics; Gene","score_opus":0.03876826994736631,"score_gpt":0.2047617480017865,"score_spread":0.1659934780544202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035092917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956033,0.0012574508,0.00014063725,0.0000026566295,0.00006142011,0.00009705216,0.0016869277,0.000004744215,0.0011457774],"genre_scores_gemma":[0.9984801,0.00027256127,0.00093721686,0.00001763688,0.000043572505,0.0000013023906,0.00013208683,0.000005716296,0.00010981281],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993793,0.000070223665,0.00013888963,0.00020133695,0.00009159788,0.00011867757],"domain_scores_gemma":[0.9995349,0.00001515824,0.00010380037,0.00018175294,0.00008227974,0.000082082006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000102207334,0.00009911811,0.00014402515,0.000035092708,0.00011843447,0.0000026802948,0.00013264682,0.00010762868,0.00003377074],"category_scores_gemma":[0.00006748149,0.00009966755,0.00006876538,0.000052314,0.00013397518,0.0000043534096,0.00032887084,0.000047396108,0.0000027767062],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017084899,0.00006658434,0.5313919,0.00002723793,0.00005445599,0.000004768032,0.00012646723,0.000006850911,0.46758768,0.00019737822,0.00026809573,0.00009769168],"study_design_scores_gemma":[0.0003385941,0.00015840051,0.93059874,0.000008854347,0.0000906927,0.0000059442395,0.000099910016,0.000018994007,0.06831018,0.00011052076,0.00014614985,0.000113018825],"about_ca_topic_score_codex":0.00014842323,"about_ca_topic_score_gemma":0.000055752855,"teacher_disagreement_score":0.3992775,"about_ca_system_score_codex":0.0000035736402,"about_ca_system_score_gemma":0.000031721036,"threshold_uncertainty_score":0.40643248},"labels":[],"label_agreement":null},{"id":"W2042351698","doi":"10.1007/s13225-011-0147-4","title":"Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Ascocarp; Biology; Dothideomycetes; Sister group; Phylogenetic tree; Botany; Ascospore; Taxon; Ascomycota; Taxonomy (biology); Evolutionary biology; Clade; Genetics","score_opus":0.02291378969675953,"score_gpt":0.21394200504736252,"score_spread":0.191028215350603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042351698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748415,0.00018051176,0.0005460913,0.0000057646016,0.000023055238,0.000088845576,0.00036624217,0.0000065107592,0.0012988194],"genre_scores_gemma":[0.9992283,0.0000793492,0.00039548296,0.00009320801,0.00001568994,5.5308857e-7,0.00013766943,0.0000031345241,0.000046613684],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99934566,0.00007548445,0.00009456492,0.00026097248,0.000116771975,0.00010656081],"domain_scores_gemma":[0.9996027,0.0000153562,0.000060821625,0.00019162979,0.00005642807,0.000073111216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010342706,0.00009300554,0.00014105035,0.00007955972,0.00009172559,0.000003885694,0.000108160195,0.000100824785,0.000052999385],"category_scores_gemma":[0.000059431663,0.000082783605,0.00010795563,0.0001371854,0.00006319177,0.0000021640851,0.00019057195,0.00003770594,0.0000037110165],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044709814,0.00027908236,0.7581236,0.000021699152,0.000129905,0.000053261418,0.000047303794,0.000083259016,0.23868254,0.000032264114,0.00032946988,0.0017705268],"study_design_scores_gemma":[0.00027788733,0.0007302393,0.98100793,0.0000074149825,0.0003314335,0.0000033679576,0.000026792542,0.0006059579,0.016749647,0.000008453422,0.00013386161,0.00011699994],"about_ca_topic_score_codex":0.000017508057,"about_ca_topic_score_gemma":0.0000069148828,"teacher_disagreement_score":0.22288434,"about_ca_system_score_codex":0.000005801661,"about_ca_system_score_gemma":0.000010326672,"threshold_uncertainty_score":0.33758172},"labels":[],"label_agreement":null},{"id":"W2046612218","doi":"10.1007/s13225-009-0006-8","title":"Potential use of barcoding to identify aquatic hyphomycetes","year":2010,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University; Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Hyphomycetes; Cladogram; Biology; Intraspecific competition; Phylogenetic tree; Taxonomy (biology); Interspecific competition; DNA barcoding; Conidium; Bionomics; Phylogenetics; Internal transcribed spacer; Ecology; Mycology; Evolutionary biology; Zoology; Botany; Cladistics; Genetics","score_opus":0.018539646429332295,"score_gpt":0.24190346456953563,"score_spread":0.22336381814020334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046612218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998065,0.000032611988,0.00045542588,0.000018837407,0.00030185384,0.00009589321,0.000814536,0.000009602767,0.00020626777],"genre_scores_gemma":[0.9985114,0.000010917386,0.0008587053,0.00011402277,0.00010813557,0.0000011924052,0.00009753996,0.000006055367,0.00029208694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993528,0.000024817584,0.00009748798,0.00021570358,0.00014347181,0.0001657013],"domain_scores_gemma":[0.9995395,0.000013989163,0.000042411393,0.0002136604,0.000051577186,0.00013889004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007651468,0.000093446804,0.000102531354,0.00004342161,0.00014550381,0.000022927627,0.00018524824,0.000080392674,0.000085559],"category_scores_gemma":[0.00017960106,0.0000953967,0.00010488499,0.000062339066,0.000039971423,0.00000871571,0.00052693015,0.00007173209,0.000049302384],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006905884,0.000041349555,0.1836024,0.000008704985,0.000024269657,0.0000136298095,0.000016428836,0.000017059823,0.81313664,0.00002676835,0.002815994,0.00022768574],"study_design_scores_gemma":[0.00024653558,0.00011519803,0.8562431,0.000009335398,0.0000658849,0.0000113498645,0.000029947889,0.00007736807,0.13916446,0.000020266489,0.0038310294,0.00018552713],"about_ca_topic_score_codex":0.00007924584,"about_ca_topic_score_gemma":0.000047817342,"teacher_disagreement_score":0.6739722,"about_ca_system_score_codex":0.0000033155343,"about_ca_system_score_gemma":0.000022030581,"threshold_uncertainty_score":0.38901648},"labels":[],"label_agreement":null},{"id":"W2058792898","doi":"10.1007/s13225-011-0129-6","title":"Poplar rust systematics and refinement of Melampsora species delineation","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Center for Northern Studies; Natural Resources Canada; Agriculture and Agri-Food Canada; Canadian Forest Service","funders":"Natural Resources Canada; Natural Sciences and Engineering Research Council of Canada; Ontario Genomics Institute; Canadian Natural Resources Limited; Genome Canada","keywords":"Biology; Taxonomy (biology); Taxon; Systematics; Phylogenetic tree; Concordance; Mycology; Rust (programming language); Dothideomycetes; Botany; Ecology; Zoology; Evolutionary biology; Bioinformatics","score_opus":0.033978687861615085,"score_gpt":0.20491366612087963,"score_spread":0.17093497825926454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058792898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948893,0.0005847331,0.00076424965,0.000019326695,0.00008947231,0.00008762771,0.000051644285,0.00000483736,0.0035088025],"genre_scores_gemma":[0.997779,0.00023816939,0.00088426535,0.000022096958,0.000044982593,8.620912e-7,0.000019173352,0.000002914122,0.0010085149],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99960935,0.000017788063,0.00010081345,0.0001121075,0.00008372265,0.0000762189],"domain_scores_gemma":[0.99971676,0.0000032818573,0.000061368264,0.00011076533,0.000080362595,0.000027453176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008914154,0.00006621114,0.00010164405,0.000018022258,0.00011702408,0.00000311057,0.00006490905,0.00004690394,0.00005245866],"category_scores_gemma":[0.000024709087,0.000055369088,0.000032875247,0.000024983614,0.000047895795,0.0000022034546,0.00036561122,0.000023067738,0.000004255151],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022944152,0.00019484476,0.92402875,0.0004999509,0.00038372213,0.000008721585,0.002677842,0.0000074247523,0.058444623,0.0027198065,0.010094774,0.00071009697],"study_design_scores_gemma":[0.0014351936,0.001025469,0.8324546,0.00013551288,0.0003659904,0.00001724815,0.004843419,0.0000693993,0.13478339,0.00007062279,0.024268381,0.00053073856],"about_ca_topic_score_codex":0.0000777996,"about_ca_topic_score_gemma":0.00002819732,"teacher_disagreement_score":0.09157411,"about_ca_system_score_codex":0.000005125437,"about_ca_system_score_gemma":0.000006489627,"threshold_uncertainty_score":0.2257886},"labels":[],"label_agreement":null},{"id":"W2072087764","doi":"10.1007/s13225-011-0128-7","title":"Fifty years of oomycetes—from consolidation to evolutionary and genomic exploration","year":2011,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Oomycete; Biology; Zoospore; Clade; Phylogenetics; Evolutionary biology; Phylum; Genetics; Botany; Gene; Spore","score_opus":0.04438852488853193,"score_gpt":0.17862399626906653,"score_spread":0.1342354713805346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072087764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998803,0.00006774026,0.000008928153,0.000032704153,0.00004511867,0.00005865936,0.0004943537,0.000010351945,0.0004791376],"genre_scores_gemma":[0.99951804,0.000031837233,0.0002978981,0.000030641793,0.000026680667,5.61424e-7,0.00005217707,1.3267301e-7,0.000042059408],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997093,0.000019675743,0.000049327904,0.00010283917,0.00006136275,0.00005751052],"domain_scores_gemma":[0.99986124,0.000028037186,0.000029631112,0.000019230172,0.000022185071,0.00003968866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003811974,0.000032276268,0.000052858133,0.0000054216725,0.000100316174,0.0000036831716,0.00006305051,0.000028666349,0.00013083805],"category_scores_gemma":[0.000009354606,0.000016355467,0.000016639502,0.00005384725,0.000021219998,0.000087979344,0.00012155582,0.000019805797,0.00002104286],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009940632,0.000037766826,0.36198854,0.000002291107,0.000009202654,0.000007691439,0.00048585774,0.000001666519,0.6287444,0.00015342921,0.00063518126,0.007834569],"study_design_scores_gemma":[0.000036882047,0.00005039552,0.9975317,0.000004494676,0.0000061172072,6.90013e-7,0.00015897822,0.000009436655,0.0012934069,0.00025585553,0.00060798123,0.000044038574],"about_ca_topic_score_codex":0.0005006,"about_ca_topic_score_gemma":0.0001602287,"teacher_disagreement_score":0.63554317,"about_ca_system_score_codex":0.000008542716,"about_ca_system_score_gemma":0.000001914194,"threshold_uncertainty_score":0.14325848},"labels":[],"label_agreement":null},{"id":"W2077082524","doi":"10.1007/s13225-012-0166-9","title":"Phylogenetic placement of lichenicolous Phoma species in the Phaeosphaeriaceae (Pleosporales, Dothideomycetes)","year":2012,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Museum of Nature","funders":"National Science Foundation","keywords":"Dothideomycetes; Phoma; Biology; Botany; Clade; Genus; Lichen; Taxonomy (biology); Ascomycota; Phylogenetic tree; Zoology; Genetics","score_opus":0.01999265232100675,"score_gpt":0.2207947985200307,"score_spread":0.20080214619902395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077082524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99471843,0.002697293,0.000026431586,0.000033837616,0.00014256702,0.00020957287,0.00069624063,0.000005724255,0.001469929],"genre_scores_gemma":[0.99893963,0.00020474271,0.00011112734,0.00020649863,0.00016746085,0.0000059206845,0.00013706974,0.0000062460354,0.00022131378],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905944,0.000100529855,0.00015018228,0.00018306174,0.00019961949,0.00030714725],"domain_scores_gemma":[0.9995105,0.000026298187,0.00008106518,0.0002659073,0.000034464883,0.000081754006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002670788,0.00013802455,0.00014872028,0.00003251529,0.000120734716,0.000008476377,0.00032446545,0.00008576673,0.00008126653],"category_scores_gemma":[0.000047031852,0.00011020548,0.00010610068,0.000107379536,0.00009270043,0.0000068871027,0.0003921199,0.00007090643,0.000015079894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017942724,0.00027471074,0.7562027,0.000018820563,0.000032208187,0.00000950185,0.00027023413,0.000015834214,0.24040583,0.000110057415,0.0023729482,0.0001077231],"study_design_scores_gemma":[0.0005233181,0.00019662136,0.9618088,0.00000837492,0.000050709077,0.000012549609,0.00045034438,0.0000043102605,0.02678613,0.000008784069,0.0099939825,0.00015609396],"about_ca_topic_score_codex":0.000049665996,"about_ca_topic_score_gemma":0.000051338793,"teacher_disagreement_score":0.2136197,"about_ca_system_score_codex":0.000015012534,"about_ca_system_score_gemma":0.000027436525,"threshold_uncertainty_score":0.44940493},"labels":[],"label_agreement":null},{"id":"W2084222310","doi":"10.1007/s13225-014-0283-8","title":"Molecular phylogenetic analyses redefine seven major clades and reveal 22 new generic clades in the fungal family Boletaceae","year":2014,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Clade; Subfamily; Systematics; Phylogenetic tree; Zoology; Taxonomy (biology); Genus; Evolutionary biology; Genetics; Gene","score_opus":0.03367772915755129,"score_gpt":0.23365965327057847,"score_spread":0.19998192411302718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084222310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99437785,0.0012385618,0.0000169616,0.0007563926,0.00010540781,0.0001440883,0.00026671326,0.000027063214,0.0030669363],"genre_scores_gemma":[0.9980119,0.00023058664,0.00010666384,0.000999526,0.00020920082,0.0000023861273,0.00016959959,9.177542e-7,0.00026921043],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988017,0.00025741608,0.00014789963,0.0003015884,0.0002260364,0.00026537426],"domain_scores_gemma":[0.9991673,0.0005453139,0.00006391376,0.00008466843,0.00002782028,0.000110980895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020514226,0.00016128006,0.00019003882,0.000026610589,0.00039614897,0.00009513573,0.000339127,0.000082666615,0.000412722],"category_scores_gemma":[0.00007197932,0.00006603929,0.000099181736,0.0003214692,0.00001983264,0.00010408198,0.00023682056,0.00020459523,0.0000998553],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010121723,0.00007649359,0.5771666,0.0000107905225,0.000043762564,0.00004920067,0.00027325973,0.00007516964,0.39436814,0.00047325136,0.020122502,0.007239562],"study_design_scores_gemma":[0.000121394165,0.00021212517,0.9809873,0.000021396307,0.000088237255,0.00003778518,0.0005353255,0.00015380605,0.00095804373,0.0007873689,0.015861992,0.00023520715],"about_ca_topic_score_codex":0.004417386,"about_ca_topic_score_gemma":0.00057660614,"teacher_disagreement_score":0.40382066,"about_ca_system_score_codex":0.000016155895,"about_ca_system_score_gemma":0.000007138711,"threshold_uncertainty_score":0.66777956},"labels":[],"label_agreement":null},{"id":"W2086924055","doi":"10.1007/s13225-014-0300-y","title":"Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing","year":2014,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Allison University","funders":"European Regional Development Fund; Programa Operacional Temático Factores de Competitividade","keywords":"Decomposer; Pyrosequencing; Hyphomycetes; Biology; Ecology; Chytridiomycota; Biodiversity; Ascomycota; Ecosystem","score_opus":0.014678770169019553,"score_gpt":0.19466587584766915,"score_spread":0.1799871056786496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086924055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997149,0.000045676214,0.0003041355,0.00006590031,0.00011417065,0.00018204727,0.00009819455,0.00005146985,0.001989439],"genre_scores_gemma":[0.9979363,0.000076547316,0.0016592495,0.00011198793,0.000017080098,0.0000022182958,0.000054182714,0.000008958991,0.00013348536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985307,0.00015867186,0.00021949393,0.00028357134,0.0004806326,0.00032692467],"domain_scores_gemma":[0.9992098,0.00013210835,0.00018078332,0.0003491504,0.000013066393,0.00011505372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003200677,0.00020931207,0.0002486492,0.000044650744,0.0009879345,0.000016565476,0.0005422891,0.0000855537,0.0005239946],"category_scores_gemma":[0.00002029567,0.00022435002,0.00010467012,0.00014344162,0.0007322902,0.00027327472,0.0018889267,0.00020150542,0.00027375968],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003191742,0.00012157942,0.98419833,0.000015738995,0.00003795108,0.0000026850732,0.002931971,0.0007307841,0.010020907,0.000050958115,0.0014913536,0.0003657978],"study_design_scores_gemma":[0.0005305498,0.00021468154,0.98530626,0.000023645043,0.00007676819,0.0000033258873,0.0029997611,0.0006889648,0.0090062115,0.00013292267,0.0007170455,0.0002998465],"about_ca_topic_score_codex":0.00952201,"about_ca_topic_score_gemma":0.0006085035,"teacher_disagreement_score":0.008913506,"about_ca_system_score_codex":0.00039911096,"about_ca_system_score_gemma":0.0000021591275,"threshold_uncertainty_score":0.99707365},"labels":[],"label_agreement":null},{"id":"W2092235134","doi":"10.1007/s13225-012-0179-4","title":"Molecular data place the hyphomycetous lichenicolous genus Sclerococcum close to Dactylospora (Eurotiomycetes) and S. parmeliae in Cladophialophora (Chaetothyriales)","year":2012,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brandon University","funders":"Division of Environmental Biology","keywords":"Biology; Clade; Genus; Phylogenetic tree; Lineage (genetic); Lichen; Botany; Sister group; New guinea; Zoology; Genetics; Gene","score_opus":0.04460136665554357,"score_gpt":0.23503563794605498,"score_spread":0.1904342712905114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092235134","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954657,0.00053542823,0.0000011359492,0.0020134756,0.0004231533,0.0005845381,0.00032446536,0.000054639186,0.00059749064],"genre_scores_gemma":[0.997447,0.000062451385,0.000062720435,0.0018698414,0.0003997978,0.000010198817,0.000086347005,0.00000226461,0.000059343096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981059,0.0002473243,0.00021310868,0.00052162784,0.0002607237,0.0006513384],"domain_scores_gemma":[0.99896425,0.0002855532,0.00008661287,0.00028680492,0.00004599619,0.0003308002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067552284,0.00022396914,0.00027487127,0.000026940388,0.0005160855,0.00006559111,0.0010429317,0.00018178622,0.00022096116],"category_scores_gemma":[0.00020785874,0.00010016968,0.000057358717,0.00045750578,0.00012399511,0.00032688727,0.0032812196,0.0003111276,0.00019760497],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034588043,0.00034175688,0.9470897,0.00001203432,0.000045801997,0.00008116016,0.0012898772,0.000009722001,0.03430913,0.000581327,0.0058271675,0.010066484],"study_design_scores_gemma":[0.00037275508,0.00021216545,0.97205466,0.000007612073,0.00004010725,0.00002107579,0.0005068094,0.000038309765,0.000484073,0.000087884946,0.025886146,0.00028841614],"about_ca_topic_score_codex":0.0015625411,"about_ca_topic_score_gemma":0.0013183687,"teacher_disagreement_score":0.033825055,"about_ca_system_score_codex":0.000064010535,"about_ca_system_score_gemma":0.000016384283,"threshold_uncertainty_score":0.40898058},"labels":[],"label_agreement":null},{"id":"W2109296318","doi":"10.1007/s13225-014-0291-8","title":"Improving ITS sequence data for identification of plant pathogenic fungi","year":2014,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Austrian Centre of Industrial Biotechnology; Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Vetenskapsrådet; National Science Foundation; Government of Canada; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Mycology; Identification (biology); Sequence (biology); Plant biology; Computational biology; Botany; Genetics","score_opus":0.03764576999973513,"score_gpt":0.24484458453340696,"score_spread":0.20719881453367184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109296318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9225386,0.0006198789,0.02176253,0.000015055154,0.00020696285,0.00029220406,0.054466642,0.0000163636,0.000081758495],"genre_scores_gemma":[0.99385345,0.00007162594,0.00036628914,0.000056397406,0.00011164612,0.0000034255193,0.005385537,0.000006158425,0.0001454535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992332,0.000036100042,0.0001388453,0.00033605134,0.000107440384,0.00014838677],"domain_scores_gemma":[0.9992256,0.000022237606,0.00012267317,0.000477287,0.00008793706,0.0000642666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002841036,0.00008690908,0.000100247824,0.000023094088,0.00015490621,0.000011516192,0.00045289818,0.00007241014,0.000005664017],"category_scores_gemma":[0.0002240432,0.000088661654,0.000062780826,0.000037103782,0.000027573686,0.0000116113015,0.0006196363,0.000029687402,0.000005496714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000105708095,0.00003525509,0.013186174,0.000067925204,0.000025575757,0.0000011814196,0.000008082255,0.000014386117,0.98398083,0.000115927105,0.0013604526,0.0010984871],"study_design_scores_gemma":[0.0021599643,0.0008534869,0.3451451,0.000060818234,0.00061944,0.000038250455,0.00013065584,0.04622159,0.56979495,0.0001152678,0.033806264,0.0010542338],"about_ca_topic_score_codex":0.0000148347235,"about_ca_topic_score_gemma":0.000011654713,"teacher_disagreement_score":0.4141859,"about_ca_system_score_codex":0.0000064477426,"about_ca_system_score_gemma":0.000032827822,"threshold_uncertainty_score":0.36155173},"labels":[],"label_agreement":null},{"id":"W2161524306","doi":"10.1007/s13225-014-0298-1","title":"One stop shop: backbones trees for important phytopathogenic genera: I (2014)","year":2014,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":379,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Research Council of Thailand; Mae Fah Luang University; Ministerstwo Edukacji i Nauki; Kunming Institute of Botany, Chinese Academy of Sciences; Consortium of International Agricultural Research Centers; Svenska Forskningsrådet Formas; Universiti Malaya; Chinese Academy of Sciences","keywords":"Biology; Botany; Curvularia; Dothideomycetes; Bipolaris; Plant disease; Alternaria; Ascomycota","score_opus":0.014872454524769341,"score_gpt":0.2114287384593755,"score_spread":0.19655628393460614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161524306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99134094,0.0011309201,0.0031987526,0.000055878976,0.00029806147,0.00025416267,0.0030102483,0.000033211112,0.00067784946],"genre_scores_gemma":[0.99650514,0.0002657057,0.0009108522,0.00030110122,0.00052982377,0.000013616501,0.0007828158,0.000017276168,0.00067363906],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988322,0.000053466763,0.00016622692,0.0004531602,0.00015878587,0.00033613265],"domain_scores_gemma":[0.99928355,0.000023231847,0.0000900319,0.00033522132,0.00009422353,0.00017371062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021413596,0.00018294771,0.00020747198,0.00003731831,0.00034304996,0.000022299648,0.00026163083,0.00013672147,0.000052138494],"category_scores_gemma":[0.00009017378,0.00019032558,0.0002365566,0.000045698533,0.000055959306,0.0000072083867,0.00036776793,0.000055875655,0.00003244818],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030180038,0.00016313055,0.17535762,0.000033176875,0.00008874159,0.000006059187,0.000022673097,0.000027291806,0.81280017,0.0003350605,0.008985076,0.0018791821],"study_design_scores_gemma":[0.0026982555,0.0013180651,0.83818084,0.000030158588,0.00047049244,0.000026579719,0.00010979533,0.0010968698,0.075631514,0.00046464498,0.07880493,0.0011678443],"about_ca_topic_score_codex":0.00001686576,"about_ca_topic_score_gemma":0.00006372098,"teacher_disagreement_score":0.73716867,"about_ca_system_score_codex":0.000013095431,"about_ca_system_score_gemma":0.000036356218,"threshold_uncertainty_score":0.77612513},"labels":[],"label_agreement":null},{"id":"W2304950966","doi":"10.1007/s13225-016-0357-x","title":"Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system","year":2016,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"National Natural Science Foundation of China","keywords":"Subgenus; Biology; Agaricus; Clade; Phylogenetic tree; Taxonomy (biology); Taxonomic rank; Phylogenetics; Taxon; Evolutionary biology; Agaricales; Monophyly; Zoology; Mushroom; Botany; Genetics; Gene","score_opus":0.03638810634801903,"score_gpt":0.21542831078991048,"score_spread":0.17904020444189145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2304950966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99380994,0.00003458471,0.00027230865,0.000033465327,0.0010177345,0.00056571193,0.0037370122,0.000028507204,0.0005007483],"genre_scores_gemma":[0.99964166,0.000011314392,0.00013542372,0.0000053959575,0.00011256511,0.0000060218895,0.0000054790303,5.4810454e-7,0.00008158957],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992689,0.00009704672,0.00016771251,0.0002067243,0.00010718178,0.00015245337],"domain_scores_gemma":[0.9991882,0.00044395827,0.00016462423,0.00006661565,0.00008944375,0.000047146325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023017438,0.000099344485,0.00016091308,0.000013074253,0.0008507925,0.000020302905,0.00020128212,0.0000517263,0.00045461926],"category_scores_gemma":[0.0000663895,0.00003285002,0.000149345,0.0001013957,0.000017767183,0.00016482676,0.00027318776,0.00005473379,0.000015629375],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027768168,0.00008105612,0.93345684,0.000023574386,0.00010192803,0.00004221608,0.00019340318,0.000033299024,0.040189374,0.0002509099,0.0015290632,0.02382068],"study_design_scores_gemma":[0.0061540385,0.00576234,0.6851969,0.0031780286,0.0038572282,0.018033281,0.15646708,0.009478656,0.0664108,0.0008956581,0.039937522,0.0046284613],"about_ca_topic_score_codex":0.0065846154,"about_ca_topic_score_gemma":0.000653115,"teacher_disagreement_score":0.24825992,"about_ca_system_score_codex":0.00013718368,"about_ca_system_score_gemma":0.00001585464,"threshold_uncertainty_score":0.99540126},"labels":[],"label_agreement":null},{"id":"W2469934575","doi":"10.1007/s13225-015-0336-7","title":"Porcini mushrooms (Boletus sect. Boletus) from China","year":2015,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Boletus; Biology; Synonym (taxonomy); Botany; Phylogenetic tree; Agaricales; Mushroom; Agaricus; Taxonomy (biology); Genus; Genetics; Gene","score_opus":0.04292820795864073,"score_gpt":0.2554379703157906,"score_spread":0.21250976235714986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2469934575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.971644,0.0002542314,0.00021257867,0.0018193764,0.00035889485,0.00021199639,0.0002428821,0.00014468716,0.025111364],"genre_scores_gemma":[0.99611586,0.000011695032,0.00042036033,0.00086433877,0.00038001998,0.000004246247,0.00026058053,0.000007842235,0.0019350708],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909824,0.00004184043,0.00011810428,0.00031117097,0.00020149421,0.00022917411],"domain_scores_gemma":[0.99916416,0.00004363729,0.00005282848,0.00033969345,0.00007811561,0.00032156875],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013498476,0.00013655274,0.00022836209,0.0000453924,0.00026457658,0.000008159065,0.00017229895,0.00017443643,0.00055978465],"category_scores_gemma":[0.0000919725,0.00012212787,0.00009488852,0.00014865556,0.00011361649,0.000073532625,0.0003769551,0.00029723896,0.0013476311],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033930622,0.00021906759,0.9119756,0.0000092371865,0.00009616672,0.00009990423,0.000895049,0.0000037561476,0.0036228707,0.0005844837,0.08145241,0.0007021087],"study_design_scores_gemma":[0.0015485354,0.00020386011,0.9653927,0.000016223115,0.00014738455,0.000019802485,0.0002722781,0.000058046397,0.0022339101,0.00074783806,0.029195473,0.00016395298],"about_ca_topic_score_codex":0.0010672719,"about_ca_topic_score_gemma":0.000031782107,"teacher_disagreement_score":0.053417057,"about_ca_system_score_codex":0.000077641926,"about_ca_system_score_gemma":0.00007179602,"threshold_uncertainty_score":0.99942994},"labels":[],"label_agreement":null},{"id":"W2536941693","doi":"10.1007/s13225-016-0375-8","title":"One hundred noteworthy boletes from China","year":2016,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Youth Innovation Promotion Association of the Chinese Academy of Sciences; Ministry of Science and Technology of the People's Republic of China; Natural Science Foundation of Yunnan Province; National Natural Science Foundation of China","keywords":"Holarctic; Biology; Clade; Phylogenetic tree; Zoology; China; Ecology; Genus; Geography; Archaeology","score_opus":0.015987550913468325,"score_gpt":0.17175733114414202,"score_spread":0.1557697802306737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2536941693","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884504,0.00006938378,0.00001893149,0.0015101815,0.00032441877,0.0000631282,0.004952171,0.0000799874,0.004531409],"genre_scores_gemma":[0.9983459,0.00015450869,0.00004841611,0.00013988676,0.0003153285,9.06895e-7,0.00031177292,3.2480142e-7,0.00068296364],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993644,0.000038536473,0.000074888914,0.00020060629,0.00014828044,0.00017333218],"domain_scores_gemma":[0.99909234,0.00070114684,0.000038812595,0.000045900848,0.000025488527,0.000096324395],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000046854366,0.00007146846,0.000101231206,0.000006519858,0.00038256543,0.00002361768,0.0002107581,0.000065297885,0.015710782],"category_scores_gemma":[0.000078267454,0.000027829048,0.000083793704,0.00008438059,0.0000079350775,0.0001632092,0.0002480049,0.000070297654,0.003047611],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000081747494,0.00007147829,0.7045549,7.8845807e-7,0.000025325488,0.000007722488,0.00005362985,1.5715378e-7,0.21676849,0.0003525675,0.008579267,0.069503896],"study_design_scores_gemma":[0.000050979153,0.00007058779,0.9733022,0.000028149814,0.000017658542,0.0000012203399,0.000019449375,0.0000033815436,0.0029356088,0.0012681553,0.02217738,0.00012524494],"about_ca_topic_score_codex":0.0052168528,"about_ca_topic_score_gemma":0.000561289,"teacher_disagreement_score":0.26874724,"about_ca_system_score_codex":0.000018569386,"about_ca_system_score_gemma":0.0000021838987,"threshold_uncertainty_score":0.99772865},"labels":[],"label_agreement":null},{"id":"W2608920092","doi":"","title":"Diversity of fungi associated with the mountain pine beetle, Dendroctonus ponderosae and infested lodgepole pines in British Columbia","year":2006,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Dendroctonus; Mountain pine beetle; Pinus contorta; Ophiostoma; Bark beetle; Biology; Botany; Woody plant; Ecology; Abies lasiocarpa; Bark (sound); Fungus","score_opus":0.006151321076210748,"score_gpt":0.1756981065003475,"score_spread":0.16954678542413676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608920092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968375,0.0009622239,0.000022815106,0.000014860089,0.000028235501,0.0001575229,0.0017497658,0.000011696014,0.0002153793],"genre_scores_gemma":[0.9987858,0.00010748534,0.00001771561,0.00008056169,0.00003177171,0.0000016942696,0.00032855725,0.0000065341987,0.0006398911],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991691,0.00007356902,0.00011156692,0.00025599092,0.00017547482,0.00021431448],"domain_scores_gemma":[0.9995955,0.00002635573,0.000093579045,0.00013468132,0.00009240597,0.000057454796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119171316,0.00010179802,0.00016897566,0.00002417311,0.00057900354,0.00003930213,0.00017848269,0.000108668726,0.000019001962],"category_scores_gemma":[0.00003705681,0.00011923946,0.00005344762,0.0001527864,0.00015743836,0.000011665967,0.0010926838,0.00008084639,7.715988e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007032401,0.0001519454,0.9493564,0.000016396223,0.000050120318,0.0000781265,0.000031329637,0.000019911247,0.04690136,0.0000044201015,0.0031968486,0.00012285385],"study_design_scores_gemma":[0.0008891957,0.00015651413,0.9978866,0.00002651558,0.00006315,0.000023464561,0.00012734112,0.000020059148,0.00044858016,0.000019688167,0.00018036185,0.00015855463],"about_ca_topic_score_codex":0.024539627,"about_ca_topic_score_gemma":0.22470844,"teacher_disagreement_score":0.2001688,"about_ca_system_score_codex":0.000022462284,"about_ca_system_score_gemma":0.000034745837,"threshold_uncertainty_score":0.98195606},"labels":[],"label_agreement":null},{"id":"W2612855985","doi":"","title":"Determining fungal diversity on Dendroctonus ponderosae and Ips pini affecting lodgepole pine using cultural and molecular methods","year":2005,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Dendroctonus; Biology; Bark beetle; Mountain pine beetle; Pinus contorta; Botany; Ribosomal DNA; Internal transcribed spacer; Bark (sound); Taxon; Restriction fragment length polymorphism; Genetic diversity; Ribosomal RNA; Ecology; Phylogenetics; Curculionidae; Polymerase chain reaction; Population; Genetics; Gene","score_opus":0.04199177053990621,"score_gpt":0.3060407397236686,"score_spread":0.26404896918376236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2612855985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691325,0.001000636,0.0010937469,0.000029806299,0.00011611239,0.00014171637,0.00031267817,0.000029744375,0.0003622991],"genre_scores_gemma":[0.9936212,0.00010252692,0.0056170737,0.00035856408,0.00016064604,8.3648996e-7,0.000056486944,0.000013404106,0.000069262234],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99858665,0.00017549646,0.0001348906,0.00055288716,0.00018567094,0.0003643871],"domain_scores_gemma":[0.9993614,0.000041212086,0.00009385221,0.00019495901,0.000060172268,0.00024840687],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023957618,0.00026487344,0.00023339599,0.00006467432,0.0010523013,0.00006172075,0.00016954108,0.00016759353,0.000013266169],"category_scores_gemma":[0.000121386736,0.0002662983,0.000111008565,0.000078253695,0.00011750767,0.00003118732,0.0018959305,0.00016335165,0.0000038690646],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001744359,0.00006562316,0.25461096,0.00003682582,0.0000966735,0.00011594881,0.00021949926,0.000078108475,0.73962617,0.000025939866,0.00016239466,0.0047874],"study_design_scores_gemma":[0.0023118092,0.00078807754,0.7991011,0.0000949382,0.00046411259,0.000539437,0.0010536857,0.002312732,0.1908361,0.000026711226,0.001316365,0.0011549002],"about_ca_topic_score_codex":0.00006268239,"about_ca_topic_score_gemma":0.00003371528,"teacher_disagreement_score":0.5487901,"about_ca_system_score_codex":0.000037201455,"about_ca_system_score_gemma":0.000023248234,"threshold_uncertainty_score":0.9999789},"labels":[],"label_agreement":null},{"id":"W2620618906","doi":"10.1007/s13225-017-0381-5","title":"A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective","year":2017,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":189,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Thailand Research Fund; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China","keywords":"Basidiomycota; Biology; Taxon; Phylogenetic tree; Phylum; Ascomycota; Monophyly; Evolutionary biology; Zoology; Botany; Clade; Gene; Genetics","score_opus":0.03645047025826815,"score_gpt":0.24569698820628424,"score_spread":0.2092465179480161,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620618906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556434,0.0011392428,0.000002255406,0.00011330413,0.000052169245,0.00017219117,0.0016416195,0.000010227243,0.001304651],"genre_scores_gemma":[0.998348,0.0011242338,0.00026942897,0.000018941117,0.000027872666,0.000001669124,0.000032567837,6.8119226e-7,0.00017660948],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993836,0.000033600634,0.00009300948,0.0002266133,0.00013705631,0.00012607369],"domain_scores_gemma":[0.99934846,0.00017460405,0.00019243451,0.0000847247,0.0001263239,0.000073474526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000068118716,0.00011680062,0.00020898295,0.0000113179085,0.0004547704,0.000027662794,0.00020915244,0.00005542659,0.0008158822],"category_scores_gemma":[0.00005433314,0.000053056247,0.000040282386,0.00006524756,0.000075769094,0.00011361323,0.0003926675,0.00007060224,0.000007847786],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021839459,0.000059365262,0.8526449,0.00002812208,0.000058802278,0.000007716324,0.00017092274,0.0000022602,0.14519997,0.00079124345,0.00014624269,0.00067203003],"study_design_scores_gemma":[0.00012392578,0.00032260464,0.98581725,0.000077685574,0.00006918593,0.000011615974,0.0001156189,0.000053131414,0.012631505,0.00041616865,0.00023117547,0.00013014405],"about_ca_topic_score_codex":0.0056137163,"about_ca_topic_score_gemma":0.00026406284,"teacher_disagreement_score":0.1331723,"about_ca_system_score_codex":0.00001069849,"about_ca_system_score_gemma":0.000006219442,"threshold_uncertainty_score":0.89333373},"labels":[],"label_agreement":null},{"id":"W2772039660","doi":"10.1007/s13225-017-0391-3","title":"Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species","year":2017,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":305,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Incertae sedis; Dothideomycetes; Biology; Botany; Zoology; Taxonomy (biology); Ascomycota","score_opus":0.03195749566451251,"score_gpt":0.21930937244334278,"score_spread":0.18735187677883028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2772039660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949244,0.00076202326,0.000057939167,0.00010692423,0.00016651854,0.00015242228,0.0021253277,0.000015184596,0.001689221],"genre_scores_gemma":[0.9982434,0.00076461793,0.00015380481,0.00021292102,0.00023677133,0.0000018396163,0.000080876714,0.0000098226565,0.0002959805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99886554,0.00004667443,0.0000982019,0.0005394424,0.00015618729,0.0002939768],"domain_scores_gemma":[0.99913967,0.00004323406,0.00010999681,0.0004410193,0.000047286605,0.00021879931],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.000103956925,0.000245245,0.00021450777,0.000043694978,0.0022117186,0.00011744126,0.00035663228,0.00015198084,0.00003344292],"category_scores_gemma":[0.00016437113,0.00023760303,0.0000982838,0.000017753637,0.0003132135,0.000016622418,0.0029883727,0.0001035081,0.000019924],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023258668,0.000058716556,0.8188902,0.000020456406,0.00007357398,0.0000472387,0.00004320381,0.0000074977424,0.1790222,0.00010498723,0.0006686503,0.00083067484],"study_design_scores_gemma":[0.00065437466,0.0002677356,0.9813017,0.000013708002,0.00009569025,0.000015543257,0.000033683176,0.0000428037,0.0153636895,0.000038668586,0.0018589714,0.0003134049],"about_ca_topic_score_codex":0.00018262469,"about_ca_topic_score_gemma":0.00013104721,"teacher_disagreement_score":0.16365851,"about_ca_system_score_codex":0.000016338365,"about_ca_system_score_gemma":0.000022259142,"threshold_uncertainty_score":0.9990873},"labels":[],"label_agreement":null},{"id":"W2803566787","doi":"10.1007/s13225-018-0401-0","title":"High-level classification of the Fungi and a tool for evolutionary ecological analyses","year":2018,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":707,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Eesti Teadusfondi","keywords":"Phylum; Biology; Monophyly; Taxonomic rank; Taxon; Phylogenetic tree; Tree of life (biology); Evolutionary biology; Phylogenetics; Ecology; Clade; Paleontology","score_opus":0.08263561745056185,"score_gpt":0.2613827684879217,"score_spread":0.17874715103735983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2803566787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960826,0.000047347894,0.000033562177,0.0003851879,0.00021788887,0.00014452625,0.0027093557,0.000012796635,0.0003667345],"genre_scores_gemma":[0.9991277,0.000027514889,0.00019303638,0.0000844874,0.00015393642,0.000002923931,0.00012952142,1.6357995e-7,0.00028073296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995829,0.00004026959,0.00007862831,0.00012456396,0.00008547886,0.00008818772],"domain_scores_gemma":[0.9991359,0.00064883905,0.00005746918,0.00003378943,0.00009853129,0.000025459],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007759676,0.00005043119,0.00007428445,0.0000060030848,0.00058724644,0.000009362831,0.00013362883,0.000054578053,0.0010453593],"category_scores_gemma":[0.0001300148,0.0000171376,0.00006617885,0.000112379756,0.00003349441,0.00006864473,0.00016800124,0.0000433429,0.000031108597],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013648794,0.00008784903,0.7866472,0.000005141907,0.000024632147,2.7162972e-7,0.00004741458,0.0000013220761,0.18005072,0.0049877027,0.025178822,0.0028324174],"study_design_scores_gemma":[0.0000319252,0.00014984504,0.99324214,0.000005749654,0.000029256827,0.0000030119463,0.00007205713,0.00017496529,0.0011244025,0.000938424,0.004179757,0.00004848017],"about_ca_topic_score_codex":0.0003792351,"about_ca_topic_score_gemma":0.00017472793,"teacher_disagreement_score":0.20659491,"about_ca_system_score_codex":0.000013168965,"about_ca_system_score_gemma":0.0000041747676,"threshold_uncertainty_score":0.9998678},"labels":[],"label_agreement":null},{"id":"W2806138958","doi":"10.1007/s13225-018-0403-y","title":"Phylogeny, ecology and taxonomy of systemic pathogens and their relatives in Ajellomycetaceae (Onygenales): Blastomyces, Emergomyces, Emmonsia, Emmonsiellopsis","year":2018,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Guizhou Medical University; China Scholarship Council","keywords":"Biology; Blastomyces dermatitidis; Blastomyces; Phylogenetics; Histoplasma; Microbiology; Zoology; Genetics; Blastomycosis; Histoplasma capsulatum; Histoplasmosis; Gene","score_opus":0.025806512014744782,"score_gpt":0.22383412756354504,"score_spread":0.19802761554880025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806138958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925626,0.0024666344,0.000038562648,0.0000886755,0.00016394365,0.00044451057,0.00008888434,0.000028919769,0.004117292],"genre_scores_gemma":[0.9981946,0.0009946054,0.000319082,0.000046846526,0.000078673715,0.000012436847,0.0000051513875,0.000009235187,0.00033938634],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887824,0.00011659703,0.00027568577,0.0003681895,0.000098405544,0.00026287566],"domain_scores_gemma":[0.9991936,0.00018900823,0.00013319698,0.00019944976,0.00016436128,0.000120345685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025497048,0.00020993323,0.0005530334,0.00024365258,0.0003576244,0.000007797319,0.00006680899,0.0001473504,0.000048285274],"category_scores_gemma":[0.00009442675,0.00017532415,0.00008244937,0.0002807902,0.0006073791,0.00009998251,0.00050725276,0.00020477423,0.000012142837],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019318778,0.00011709321,0.985644,0.00014232144,0.00021671302,0.000035041216,0.002826915,0.0000010767856,0.009375209,0.00020785045,0.00046720824,0.00077342225],"study_design_scores_gemma":[0.0011760506,0.00076966383,0.9907626,0.00014840091,0.00014725949,0.00021630057,0.004079369,0.00007236106,0.0012577095,0.00008191377,0.0011060259,0.00018235011],"about_ca_topic_score_codex":0.00036039704,"about_ca_topic_score_gemma":0.0008244242,"teacher_disagreement_score":0.0081175,"about_ca_system_score_codex":0.00006522699,"about_ca_system_score_gemma":0.000049211467,"threshold_uncertainty_score":0.7149511},"labels":[],"label_agreement":null},{"id":"W2990643258","doi":"10.1007/s13225-019-00435-4","title":"Notes, outline and divergence times of Basidiomycota","year":2019,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":470,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ontario Museum; University of Toronto","funders":"","keywords":"Basidiomycota; Biology; Ascomycota; Phylum; Phylogenetic tree; Taxonomic rank; Genus; Clade; Phylogenetics; Divergence (linguistics); Evolutionary biology; Zoology; Ecology; Botany; Paleontology; Taxon","score_opus":0.011451243161607476,"score_gpt":0.18238297774489823,"score_spread":0.17093173458329075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990643258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936663,0.00014692039,0.0000016969848,0.00017596837,0.00020006804,0.00007627897,0.0011867746,0.000017531816,0.0045284755],"genre_scores_gemma":[0.99871486,0.00017114394,0.00003602978,0.000054078155,0.00003878249,2.1959976e-7,0.00011546644,1.7477629e-7,0.0008692622],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995853,0.00002170209,0.00006630092,0.00013030003,0.000102407605,0.00009404225],"domain_scores_gemma":[0.99935585,0.0004888563,0.000038642742,0.000030921416,0.00003631879,0.000049414324],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000063498555,0.00005729764,0.000095773335,0.0000069075836,0.00012474047,0.000008097949,0.000115536954,0.000037865233,0.013802997],"category_scores_gemma":[0.000046310844,0.00002405812,0.000040857718,0.00008723697,0.000006272816,0.00009162604,0.00027818113,0.000057132325,0.00052440586],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003451232,0.000022994302,0.9613339,0.0000055257788,0.00000787462,0.0000018598638,0.000040876246,0.0000016419523,0.034299035,0.00061787217,0.002052836,0.0015811183],"study_design_scores_gemma":[0.000059131846,0.00021616137,0.97655505,0.000027710701,0.0000227161,0.000010135642,0.00013245177,0.00014735342,0.0035278713,0.00035421635,0.018802144,0.0001450766],"about_ca_topic_score_codex":0.0021767744,"about_ca_topic_score_gemma":0.00009491995,"teacher_disagreement_score":0.030771162,"about_ca_system_score_codex":0.0000047168733,"about_ca_system_score_gemma":0.0000018231274,"threshold_uncertainty_score":0.9870985},"labels":[],"label_agreement":null},{"id":"W3010758724","doi":"10.1007/s13225-020-00439-5","title":"Fungal diversity notes 1151–1276: taxonomic and phylogenetic contributions on genera and species of fungal taxa","year":2020,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":284,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Population and Public Health; Harvard University; Ministry of Science and Technology of the People's Republic of China; Smithsonian Tropical Research Institute; Royal Golden Jubilee (RGJ) Ph.D. Programme; National Science Foundation; Science and Engineering Research Board; Pró-Reitoria de Pesquisa e Pós-Graduação, Universidade Federal do Pará; David Rockefeller Center for Latin American Studies, Harvard University; Debreceni Egyetem; University of Mauritius; Thailand Research Fund; Mae Fah Luang University; Emberi Eroforrások Minisztériuma; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Kunming Institute of Botany, Chinese Academy of Sciences; Chiang Mai University; China Postdoctoral Science Foundation; Deutscher Akademischer Austauschdienst; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Smithsonian Institution; National Natural Science Foundation of China; Ministry of Earth Sciences; Chinese Academy of Sciences; King Saud University","keywords":"Incertae sedis; Biology; Dothideomycetes; Botany; Taxon; Zoology; Ascomycota","score_opus":0.023567250575400864,"score_gpt":0.20340781896010185,"score_spread":0.17984056838470097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010758724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875935,0.0014271686,0.00024236474,0.0001999373,0.00008216759,0.00021171503,0.009678462,0.000017783297,0.0005469588],"genre_scores_gemma":[0.9984454,0.0005381621,0.00011665541,0.00042675476,0.00018937577,0.0000020972686,0.00019481133,0.000008670034,0.000078057936],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988071,0.00008316113,0.00015758774,0.0004931378,0.00017994271,0.00027907774],"domain_scores_gemma":[0.99925256,0.000049664683,0.00011178801,0.00018906141,0.00008681397,0.00031013796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008921883,0.0002303632,0.0002798087,0.000043523425,0.0005984448,0.000025573112,0.00021191177,0.00015145012,0.000050124487],"category_scores_gemma":[0.00015161144,0.0002373282,0.00012304439,0.00007239772,0.0002459711,0.000011254078,0.0016385404,0.00012410061,0.000012144826],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047232924,0.00008133858,0.64586025,0.00004093842,0.00011679968,0.000036291458,0.000090246256,0.00003467539,0.35099494,0.0002483523,0.0018342067,0.00018959356],"study_design_scores_gemma":[0.0012090979,0.0007310241,0.9534031,0.000015287424,0.00019832645,0.000015689486,0.00013870896,0.00015441452,0.04103039,0.00002037829,0.0027261218,0.00035744018],"about_ca_topic_score_codex":0.00006909218,"about_ca_topic_score_gemma":0.000028050996,"teacher_disagreement_score":0.30996457,"about_ca_system_score_codex":0.00001867489,"about_ca_system_score_gemma":0.000039525956,"threshold_uncertainty_score":0.9677963},"labels":[],"label_agreement":null},{"id":"W3174054661","doi":"10.1007/s13225-021-00476-8","title":"Phylogenomic reconstruction addressing the Peltigeralean backbone (Lecanoromycetes, Ascomycota)","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Royal British Columbia Museum","funders":"Vetenskapsrådet; National Science Foundation","keywords":"Biology; Phylogenetic tree; Phylogenetics; Coalescent theory; Evolutionary biology; Phylogenomics; Nuclear gene; Mitochondrial DNA; Ribosomal DNA; Computational biology; Clade; Genetics; Gene","score_opus":0.060626638627930544,"score_gpt":0.21312299413447539,"score_spread":0.15249635550654483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174054661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892587,0.0003434674,0.0000012008672,0.0015110543,0.0005567249,0.000084749736,0.000062185354,0.000050537208,0.008131374],"genre_scores_gemma":[0.997932,0.000050451174,0.00007784913,0.0005899531,0.00035914528,0.0000016204103,0.00004462946,6.339075e-7,0.0009437157],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902874,0.0001709833,0.00011661108,0.0002815231,0.00013308531,0.00026904736],"domain_scores_gemma":[0.99951744,0.00016896255,0.00006839208,0.00007744347,0.00008456304,0.00008319231],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017125993,0.00010976457,0.00014455826,0.0000061072765,0.0011459887,0.00006535423,0.00025141827,0.00009782289,0.003223732],"category_scores_gemma":[0.000051617113,0.000043522217,0.00011722554,0.00021712221,0.000104151375,0.00012162597,0.0005163468,0.00019976398,0.00018264017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007235998,0.00013858434,0.5779225,0.000009320391,0.00007751726,0.00007426153,0.0003897291,0.000004590038,0.22054903,0.000385422,0.005487769,0.19488892],"study_design_scores_gemma":[0.00019899549,0.00005574034,0.9813587,0.000009525956,0.00003148294,0.0000994924,0.00081701134,0.00003035736,0.005293886,0.00040902154,0.011524046,0.00017171787],"about_ca_topic_score_codex":0.00025238487,"about_ca_topic_score_gemma":0.0013162253,"teacher_disagreement_score":0.4034362,"about_ca_system_score_codex":0.000055032433,"about_ca_system_score_gemma":0.000018867515,"threshold_uncertainty_score":0.99768746},"labels":[],"label_agreement":null},{"id":"W3177280576","doi":"10.1007/s13225-021-00475-9","title":"The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks","year":2021,"lang":"en","type":"review","venue":"Fungal Diversity","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Agricultural Research Service; National Institutes of Health; Canadian Institute for Advanced Research; Deutsche Forschungsgemeinschaft; U.S. Department of Agriculture","keywords":"Biology; Genetic algorithm; Phenotype; Evolutionary biology; Genome; Biodiversity; Computational biology; Genetics; Ecology; Gene","score_opus":0.029838185238996683,"score_gpt":0.27972506933629804,"score_spread":0.24988688409730136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3177280576","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00031077894,0.99750894,0.000443679,0.00003927883,0.0005183239,0.00043084228,0.00048037965,0.000007344571,0.0002604508],"genre_scores_gemma":[0.00078377314,0.9954179,0.00019449822,0.00004631952,0.0014135025,0.000015132699,0.000457554,0.000016040074,0.0016552588],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990856,0.000065149776,0.00015399429,0.00037906034,0.000103219136,0.00021299343],"domain_scores_gemma":[0.999365,0.0001325883,0.00011426947,0.00021791442,0.0001051203,0.00006515457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011678689,0.00021399042,0.0004674251,0.000017624228,0.00068264164,0.00008435754,0.00020896082,0.00016947488,0.000035833993],"category_scores_gemma":[0.00010519475,0.0001532102,0.0002200122,0.00006117763,0.00006217777,0.0000030966276,0.0010153829,0.00009093735,0.0000072344237],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008054498,0.00006393464,0.008626582,0.0010585958,0.002724036,0.000012546633,0.0007249245,0.000024513276,0.00010321937,0.0006067109,0.117146716,0.8688277],"study_design_scores_gemma":[0.00011533056,0.000048517457,0.0011230513,0.0003004542,0.00031199952,8.3587275e-7,0.00017728488,0.0000052301275,0.000008618775,0.000006249222,0.9976981,0.00020430528],"about_ca_topic_score_codex":0.000026317712,"about_ca_topic_score_gemma":0.0001499324,"teacher_disagreement_score":0.8805514,"about_ca_system_score_codex":0.000037583723,"about_ca_system_score_gemma":0.00004783243,"threshold_uncertainty_score":0.6247731},"labels":[],"label_agreement":null},{"id":"W3178354191","doi":"10.1007/s13225-021-00478-6","title":"Correction to: The evolving species concepts used for yeasts: from phenotypes and genomes to speciation networks","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Genetic algorithm; Biology; Evolutionary biology; Phenotype; Genome; Mycology; Computational biology; Genetics; Paleontology; Gene","score_opus":0.01279149823608377,"score_gpt":0.22862102753205465,"score_spread":0.21582952929597088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178354191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795054,0.003052281,0.012829368,0.0008746975,0.0021612786,0.00029479017,0.00020083791,0.000013620714,0.0010677002],"genre_scores_gemma":[0.99522793,0.00014679931,0.00038484935,0.00040032406,0.0009808079,0.000004282044,0.00008699675,0.0000051090906,0.0027629125],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995173,0.000023674944,0.00005659241,0.00021424047,0.00006839818,0.00011976793],"domain_scores_gemma":[0.99966747,0.00004173609,0.000024981364,0.00010959605,0.00010951088,0.000046712903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005873685,0.00007393052,0.0000832866,0.00000999117,0.00038698487,0.000036621128,0.00007098915,0.00003895597,0.000059576505],"category_scores_gemma":[0.00011425871,0.000060489685,0.00004212098,0.00005464592,0.000019865358,0.0000037540815,0.00041768284,0.000036814818,0.000008800806],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002632757,0.000057919817,0.563629,0.000011026808,0.00032080064,0.0000045754887,0.0031144156,0.0016678569,0.074234985,0.00014612504,0.34771428,0.008835777],"study_design_scores_gemma":[0.00039005897,0.00015914677,0.8094121,0.000019055147,0.00006929011,0.0000014698913,0.002064369,0.00052961474,0.0133901555,0.00002297425,0.17373301,0.00020873059],"about_ca_topic_score_codex":0.00007575625,"about_ca_topic_score_gemma":0.0008945664,"teacher_disagreement_score":0.24578317,"about_ca_system_score_codex":0.000019424831,"about_ca_system_score_gemma":0.000014096603,"threshold_uncertainty_score":0.2976414},"labels":[],"label_agreement":null},{"id":"W3187375978","doi":"10.1007/s13225-021-00481-x","title":"Defining a species in fungal plant pathology: beyond the species level","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Subspecies; Species complex; Species name; Identification (biology); Confusion; Ecology; Evolutionary biology; Taxonomy (biology); Phylogenetic tree; Genetics","score_opus":0.026444635078193064,"score_gpt":0.2096794250478944,"score_spread":0.18323478996970136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3187375978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9801288,0.0019535995,0.00006310816,0.0002074838,0.00026608526,0.00008403792,0.0069742147,0.000013378137,0.010309275],"genre_scores_gemma":[0.994811,0.00037322767,0.0001515607,0.0006261913,0.00016242592,0.0000036200745,0.0007982672,0.000008850879,0.0030648792],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99884224,0.00012664427,0.00014296858,0.00038001777,0.00018361876,0.00032450666],"domain_scores_gemma":[0.99945873,0.000046700297,0.00005255937,0.00029753355,0.00006307529,0.00008141745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017502817,0.00016636756,0.00017246799,0.0000382602,0.00036377987,0.000038459326,0.00027075395,0.00012648075,0.00013274871],"category_scores_gemma":[0.00015220387,0.00013840414,0.00013352434,0.00013073163,0.00012550072,0.0000075493226,0.00096304226,0.00016579487,0.000042512325],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014991495,0.000116591225,0.7190812,0.000014613632,0.00005097408,0.0013786701,0.00020980283,0.00003211229,0.26237687,0.0022036207,0.014253883,0.00013172676],"study_design_scores_gemma":[0.000432414,0.000066270564,0.96419203,0.000012270694,0.000037917813,0.00017801805,0.00079703826,0.000014790761,0.01894116,0.00007310778,0.015035052,0.00021990012],"about_ca_topic_score_codex":0.000019393387,"about_ca_topic_score_gemma":0.0005240332,"teacher_disagreement_score":0.24511085,"about_ca_system_score_codex":0.00002236707,"about_ca_system_score_gemma":0.00009560935,"threshold_uncertainty_score":0.5643957},"labels":[],"label_agreement":null},{"id":"W3194579716","doi":"10.1007/s13225-021-00487-5","title":"Appressorial interactions with host and their evolution","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Intelligence Community Postdoctoral Research Fellowship Program; Thailand Research Fund","keywords":"Appressorium; Biology; Commensalism; Hyaline; Botany; Fungus; Microbiology; Bacteria; Genetics","score_opus":0.008664661216103098,"score_gpt":0.192030927951023,"score_spread":0.1833662667349199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3194579716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954712,0.00039502588,0.0012387744,0.00003243155,0.00015796596,0.00004000679,0.0009086423,0.000009327843,0.0017466515],"genre_scores_gemma":[0.9990553,0.000045216362,0.00008626329,0.0000544598,0.0001611844,0.0000012303975,0.00018838995,0.0000032742312,0.00040464677],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99961734,0.000027414144,0.00003453023,0.00018214421,0.000047238696,0.0000913173],"domain_scores_gemma":[0.99974674,0.000007589587,0.000018727422,0.000105942156,0.000059188606,0.00006183534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000021650549,0.00006824797,0.000057390676,0.000011449365,0.00020437586,0.000015832997,0.000045162047,0.00003648068,0.000022376902],"category_scores_gemma":[0.00002220715,0.000056661524,0.000032701744,0.00003672497,0.000034469693,0.000005505132,0.00026265366,0.000043203418,0.0000043430427],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023659496,0.00007182355,0.17214344,0.000009076055,0.000069831214,0.000027573673,0.000048793885,0.000007025265,0.82504666,0.00016245831,0.0020149893,0.00016173607],"study_design_scores_gemma":[0.0008875822,0.00020098164,0.91905546,0.000021506878,0.000081991864,0.0001386567,0.00062014523,0.00007391646,0.054962058,0.00004926388,0.023627771,0.00028069218],"about_ca_topic_score_codex":0.00002005422,"about_ca_topic_score_gemma":0.00009094542,"teacher_disagreement_score":0.7700846,"about_ca_system_score_codex":0.0000075276116,"about_ca_system_score_gemma":0.000030229281,"threshold_uncertainty_score":0.231059},"labels":[],"label_agreement":null},{"id":"W3200133032","doi":"10.1007/s13225-021-00482-w","title":"Contribution to rust flora in China I, tremendous diversity from natural reserves and parks","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Key Research and Development Program of China; State Key Laboratory of Microbial Resources; China National Funds for Distinguished Young Scientists; National Natural Science Foundation of China","keywords":"Biology; Rubus; Phylogenetic tree; Flora (microbiology); Phylogenetic diversity; Botany; Mycology; China; Biodiversity; Basidiomycota; Nature reserve; Ecology; Zoology; Geography; Archaeology","score_opus":0.008864528757037736,"score_gpt":0.21434030984112973,"score_spread":0.20547578108409198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3200133032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962167,0.0024494294,0.000037603408,0.0004325078,0.00024572623,0.00009085629,0.00025621228,0.000008532819,0.0002624227],"genre_scores_gemma":[0.99878603,0.00030067156,0.00010397948,0.000119518634,0.000111645866,0.0000010332124,0.00020454239,0.0000032801458,0.00036931733],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923337,0.000057224206,0.000075539094,0.0003219656,0.00011896814,0.00019295485],"domain_scores_gemma":[0.99965376,0.000011119279,0.000024905416,0.00014667601,0.00008457074,0.00007897458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008150964,0.00010751667,0.00014188037,0.000025501538,0.0004477703,0.000018993962,0.000110897876,0.00008283396,0.00004085788],"category_scores_gemma":[0.00012139691,0.000105104315,0.000050627386,0.0000861517,0.000038353544,0.000007216536,0.0029144357,0.00010099317,0.000008624669],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000280973,0.000058675043,0.9639051,0.0000061589126,0.00008052709,0.00008502197,0.00036492807,0.000011081874,0.029725181,0.000043897016,0.0048349043,0.000603547],"study_design_scores_gemma":[0.00077459705,0.0000675932,0.98282766,0.0000115536395,0.000025948342,0.000002741224,0.0002611364,0.000012093051,0.011366996,0.000031827916,0.004470751,0.00014710671],"about_ca_topic_score_codex":0.001614579,"about_ca_topic_score_gemma":0.002262903,"teacher_disagreement_score":0.01892255,"about_ca_system_score_codex":0.000028497194,"about_ca_system_score_gemma":0.000014976385,"threshold_uncertainty_score":0.42860293},"labels":[],"label_agreement":null},{"id":"W3215483547","doi":"10.1007/s13225-021-00493-7","title":"The Global Soil Mycobiome consortium dataset for boosting fungal diversity research","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint Mary's University","funders":"Natural Environment Research Council; Eesti Teadusfondi; Novo Nordisk Fonden; Russian Science Foundation; Novo Nordisk; Sight Research UK","keywords":"Edaphic; Biology; Biodiversity; Fungal Diversity; Biogeography; Ecology; Phylogenetic diversity; Macroecology; Mycology; Metadata; Phylogenetic tree; Botany; Soil water","score_opus":0.08512912443112818,"score_gpt":0.3012397723639873,"score_spread":0.2161106479328591,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3215483547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8737947,0.00037199125,0.000007867304,0.0018224954,0.00093385036,0.00025255475,0.11876134,0.000047754293,0.004007451],"genre_scores_gemma":[0.987369,0.00024160242,0.00003550056,0.00030280527,0.00044443592,0.00000495548,0.0104905665,6.417601e-7,0.0011104821],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99828136,0.00024233763,0.00013946526,0.0003829978,0.00042811676,0.000525714],"domain_scores_gemma":[0.99544007,0.003860274,0.000059142858,0.00011992178,0.00034501846,0.00017558596],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007609689,0.00012297429,0.00013702818,0.000008489886,0.007213033,0.00017795587,0.0005765259,0.000102014805,0.0013464297],"category_scores_gemma":[0.00084626675,0.000053646494,0.00013229191,0.00041628562,0.000051189338,0.00020125996,0.0029138278,0.00026519637,0.00048597396],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002739067,0.000097911165,0.6009498,0.000011058322,0.000056704026,0.000089908805,0.00007522259,0.0000045513016,0.004472025,0.002056066,0.38931084,0.0026019907],"study_design_scores_gemma":[0.00023053403,0.00028504952,0.22593088,0.000039677714,0.00008770138,0.00011815752,0.002772056,0.00024469552,0.0015294047,0.0030593758,0.7653063,0.00039613625],"about_ca_topic_score_codex":0.004127941,"about_ca_topic_score_gemma":0.0036833223,"teacher_disagreement_score":0.3759955,"about_ca_system_score_codex":0.00010358918,"about_ca_system_score_gemma":0.000031452728,"threshold_uncertainty_score":0.9995665},"labels":[],"label_agreement":null},{"id":"W32451989","doi":"10.1007/s12192-020-01123-y","title":"Unexpected ribosomal DNA internal transcribed spacer sequence variation within Erysiphe aquilegiae sensu lato","year":2004,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Powdery Mildew Fungal Diseases","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Internal transcribed spacer; Biology; Sensu; Delphinium; Powdery mildew; Ribosomal DNA; Botany; Ascomycota; Phylogenetic tree; Taxon; Genus; Genetics; Gene","score_opus":0.027899200014957368,"score_gpt":0.20789788979725055,"score_spread":0.17999868978229316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W32451989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99686724,0.000045433004,0.000055286153,0.00090244383,0.000401278,0.00022034625,0.0006057567,0.00023608106,0.0006661097],"genre_scores_gemma":[0.998849,0.000007184707,0.00015819636,0.00032546459,0.00026544457,0.000003327229,0.00012300612,0.0000016424665,0.00026676175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99835557,0.00012258367,0.00019945498,0.00046618006,0.00046570503,0.00039050693],"domain_scores_gemma":[0.99934256,0.00007922322,0.00011563924,0.00009111976,0.00011027944,0.00026115027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014091062,0.00023006862,0.0002090333,0.000022049724,0.00057784875,0.00008180806,0.00038077522,0.00014073307,0.0006676988],"category_scores_gemma":[0.00008479783,0.000113975846,0.00018122084,0.000392351,0.0001069166,0.00042573392,0.0002844451,0.00021965547,0.00022155646],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003836209,0.00034941826,0.17400491,0.000014074753,0.00009492593,0.000183829,0.0018011256,0.00019998239,0.82013845,0.0016780645,0.0006200716,0.0005315361],"study_design_scores_gemma":[0.00057001977,0.00021076138,0.98775995,0.00004294338,0.00006800806,0.000019326193,0.00040505227,0.0000719528,0.0088803405,0.0012619542,0.00035933848,0.00035037598],"about_ca_topic_score_codex":0.0032382542,"about_ca_topic_score_gemma":0.0017871727,"teacher_disagreement_score":0.81375504,"about_ca_system_score_codex":0.00017324793,"about_ca_system_score_gemma":0.000031986798,"threshold_uncertainty_score":0.73108333},"labels":[],"label_agreement":null},{"id":"W4200397826","doi":"10.1007/s13225-021-00489-3","title":"Fungal diversity notes 1387–1511: taxonomic and phylogenetic contributions on genera and species of fungal taxa","year":2021,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Education and Child Care","funders":"","keywords":"Biology; Taxon; Zoology; Taxonomy (biology); Phylogenetic tree; Fungal Diversity; Biodiversity; Mycology; Botany; Ecology","score_opus":0.01719007565117192,"score_gpt":0.20679548254436397,"score_spread":0.18960540689319205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200397826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98658913,0.0027531227,0.00014923423,0.00009298078,0.0001363648,0.00014536497,0.009302494,0.000012755714,0.00081852026],"genre_scores_gemma":[0.9978969,0.0009591886,0.00015631613,0.00018175569,0.0001415992,0.0000021831006,0.00031405393,0.000008225342,0.00033979063],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987497,0.00010775725,0.00015755348,0.0005067902,0.00018440385,0.00029383833],"domain_scores_gemma":[0.99919695,0.00006252704,0.00010284412,0.00027028273,0.00015120306,0.00021616837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011152931,0.00022231706,0.0002767639,0.000053160198,0.0006829635,0.000030618026,0.00016485693,0.00016730755,0.00007015143],"category_scores_gemma":[0.000159261,0.00023589602,0.00013349704,0.00007805328,0.00023708044,0.000010812677,0.0017613097,0.00011837136,0.000008736942],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022786397,0.0001313529,0.5879343,0.00003286985,0.00012872244,0.00008283258,0.000041509516,0.000022283157,0.40964144,0.00040848606,0.0011281411,0.00022019296],"study_design_scores_gemma":[0.0009726712,0.00029929588,0.91010165,0.000020307194,0.00018391061,0.000046091525,0.00013523064,0.0000458729,0.085338205,0.0000345952,0.0025198315,0.0003023346],"about_ca_topic_score_codex":0.00007150716,"about_ca_topic_score_gemma":0.000085952386,"teacher_disagreement_score":0.32430324,"about_ca_system_score_codex":0.000025936884,"about_ca_system_score_gemma":0.00006894244,"threshold_uncertainty_score":0.961956},"labels":[],"label_agreement":null},{"id":"W4211188431","doi":"10.1007/s13225-020-00463-5","title":"Freshwater Dothideomycetes","year":2020,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Sichuan Province Science and Technology Support Program; National Natural Science Foundation of China","keywords":"Biology; Dothideomycetes; Hyphomycetes; Botany; Cypriniformes; Zoology; Ecology; Phylogenetics; Cyprinidae; Fishery","score_opus":0.01855936055520418,"score_gpt":0.1995118231101427,"score_spread":0.18095246255493852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4211188431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941796,0.00028033604,0.00020317071,0.00029367482,0.00008306274,0.00006958822,0.0019338727,0.000029169289,0.0029275015],"genre_scores_gemma":[0.99711615,0.00003580962,0.0002215591,0.0018870906,0.0002458422,9.986337e-7,0.00022606972,0.000005798013,0.00026068435],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99945086,0.00002283038,0.000056188394,0.00022493987,0.00009574403,0.00014945568],"domain_scores_gemma":[0.99967724,0.0000040429154,0.000020110985,0.00010713506,0.000029103538,0.00016239537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000027598693,0.000087660475,0.00007509932,0.000009167086,0.00015232195,0.0000137403285,0.0001697828,0.000059898077,0.00017843976],"category_scores_gemma":[0.000045038636,0.000082004466,0.000082873565,0.000038278748,0.000030545903,0.0000034483444,0.00051094405,0.000046968922,0.00015020836],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013293076,0.00002288147,0.34477794,0.00001219562,0.000035574838,0.000040934738,0.00005488821,0.000011537781,0.60568655,0.000046571608,0.049020264,0.00015774716],"study_design_scores_gemma":[0.001323488,0.0006961878,0.42750075,0.000011989823,0.00012472422,0.000020499217,0.00017521383,0.00025753988,0.14951044,0.00008096645,0.41953698,0.00076122116],"about_ca_topic_score_codex":0.0000126032655,"about_ca_topic_score_gemma":0.00001341884,"teacher_disagreement_score":0.4561761,"about_ca_system_score_codex":0.0000032342068,"about_ca_system_score_gemma":0.000013985668,"threshold_uncertainty_score":0.3344045},"labels":[],"label_agreement":null},{"id":"W4221125287","doi":"10.1007/s13225-022-00500-5","title":"Forecasting the number of species of asexually reproducing fungi (Ascomycota and Basidiomycota)","year":2022,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"State Key Laboratory of Functions and Applications of Medicinal Plants, Guizhou Medical University; Yunnan Provincial Science and Technology Department; National Natural Science Foundation of China","keywords":"Biology; Asexual reproduction; Taxon; Botany; Biodiversity; Mycology; Ascomycota; Ecology; Alternaria","score_opus":0.03538190550855894,"score_gpt":0.20491295673797325,"score_spread":0.1695310512294143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221125287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899646,0.00015888052,0.0000013014488,0.00021698869,0.00019410088,0.00009229941,0.001495023,0.000010947085,0.007865858],"genre_scores_gemma":[0.99883497,0.000048829035,0.000039336013,0.00004354145,0.00007254541,0.000001525495,0.0000886062,3.6825182e-7,0.0008702635],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992779,0.00009581363,0.0001292366,0.00017499473,0.0002075724,0.00011450961],"domain_scores_gemma":[0.9987217,0.0010156704,0.00011950529,0.00006567812,0.00004756212,0.00002988525],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00034586142,0.00006475285,0.00011978891,0.00000792968,0.00072149566,0.000010211226,0.00020816659,0.000017712124,0.0072706263],"category_scores_gemma":[0.00012711191,0.000026785721,0.00006204505,0.00019946568,0.000017679178,0.0000713715,0.0007958839,0.00013165637,0.000008839218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007217104,0.00004179969,0.95486957,0.0000101016085,0.00002105401,0.000005460912,0.000439942,0.000022096374,0.036901295,0.0007717263,0.0048010084,0.0020437655],"study_design_scores_gemma":[0.000112122834,0.00035584785,0.93975335,0.00004168721,0.000092940376,0.00024051398,0.0077057597,0.0004683647,0.005927103,0.00081967824,0.04421482,0.0002678254],"about_ca_topic_score_codex":0.0018358141,"about_ca_topic_score_gemma":0.00007059309,"teacher_disagreement_score":0.03941381,"about_ca_system_score_codex":0.000011977511,"about_ca_system_score_gemma":0.0000046008895,"threshold_uncertainty_score":0.99363685},"labels":[],"label_agreement":null},{"id":"W4393004100","doi":"10.1007/s13225-023-00532-5","title":"Current trends, limitations and future research in the fungi?","year":2024,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Botany, Chinese Academy of Sciences; Kunming Institute of Botany, Chinese Academy of Sciences; Fundação para a Ciência e a Tecnologia; Ministério da Ciência, Tecnologia e Ensino Superior; Institute of Population and Public Health; National Research Council of Thailand; Chinese Academy of Sciences; Centro de Estudos Ambientais e Marinhos, Universidade de Aveiro; Universidade de Aveiro; King Saud University; Ministerstvo Školství, Mládeže a Tělovýchovy","keywords":"Mycology; Biology; Phylogenomics; Field (mathematics); Ecology; Data science; Engineering ethics; Computer science; Engineering; Phylogenetics; Botany","score_opus":0.10911351369798115,"score_gpt":0.3009123063228214,"score_spread":0.19179879262484023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393004100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9511101,0.015776213,4.6675913e-7,0.011811348,0.0009236265,0.00011705382,0.0012225178,0.000047160607,0.01899147],"genre_scores_gemma":[0.99266636,0.0062590586,0.0000036819793,0.000052996467,0.00056779484,0.0000034836075,0.00023661222,2.0180242e-7,0.00020980454],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993412,0.00013757423,0.00004989778,0.00014977728,0.00017776257,0.00014381592],"domain_scores_gemma":[0.9982097,0.0016983051,0.0000055500045,0.000026595826,0.00002312477,0.000036690024],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003310623,0.000048537153,0.000042142965,0.000036351063,0.00051461224,0.000106166255,0.00014832395,0.00003415329,0.0009445336],"category_scores_gemma":[0.000017162763,0.000015987498,0.000034977224,0.000589744,0.000010513083,0.000113015696,0.00012766587,0.00031634964,0.0002836924],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028645141,0.00008233819,0.13060747,0.00001521769,0.000009061172,0.000052732896,0.002152951,5.2194883e-7,0.0008880427,0.022987954,0.16009156,0.68308353],"study_design_scores_gemma":[0.000008939006,0.000044891498,0.28845116,0.000021629377,0.0000054629045,0.000011434121,0.0012987806,0.00004648441,0.000003449218,0.00079926377,0.7092655,0.00004300113],"about_ca_topic_score_codex":0.000467754,"about_ca_topic_score_gemma":0.0007667003,"teacher_disagreement_score":0.6830405,"about_ca_system_score_codex":0.000013147219,"about_ca_system_score_gemma":0.0000032770008,"threshold_uncertainty_score":0.99996877},"labels":[],"label_agreement":null},{"id":"W4401116041","doi":"10.1007/s13225-024-00534-x","title":"Taxonomic revision of Marasmius Fr. and Marasmiaceae Roze ex Kühner based on multigene phylogenetics and morphological evidence","year":2024,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant and Fungal Species Descriptions","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo; Fundação de Amparo à Pesquisa do Estado do Amazonas; National Science Foundation","keywords":"Subgenus; Biology; Sect; Botany; Phylogenetic tree; Clade; Taxonomy (biology); Evolutionary biology; Genetics; Gene","score_opus":0.03409987182776443,"score_gpt":0.23878425143908139,"score_spread":0.20468437961131697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401116041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941245,0.0038935805,0.00084993866,0.00008611189,0.00014956928,0.00014051942,0.00023927931,0.000013197663,0.0005033269],"genre_scores_gemma":[0.99653226,0.0019809965,0.0009003846,0.0001323118,0.000078723926,9.0359134e-7,0.00004171885,0.000005996074,0.00032668744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923325,0.000052802974,0.0001099992,0.0003521247,0.00010712284,0.00014469758],"domain_scores_gemma":[0.99963045,0.000056190864,0.000032395754,0.00016683283,0.000029977757,0.00008412285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014119122,0.00012912732,0.00013572071,0.000046722747,0.00012007162,0.000027274018,0.00011455523,0.00013988993,0.00006492117],"category_scores_gemma":[0.000066374494,0.00011391073,0.000062657215,0.00005870603,0.00013478857,0.000006714902,0.00036753254,0.00010266997,0.000013271264],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037024505,0.000066499124,0.10657247,0.000110190944,0.000044727636,0.00006407334,0.000031834144,0.00014813153,0.88084,0.00008322029,0.008685687,0.0029828888],"study_design_scores_gemma":[0.0010817845,0.0017980011,0.787178,0.00044384514,0.0002239793,0.000083820945,0.000090873655,0.00945284,0.11408617,0.000043841996,0.08477483,0.00074201665],"about_ca_topic_score_codex":0.000026822876,"about_ca_topic_score_gemma":0.000009616368,"teacher_disagreement_score":0.76675385,"about_ca_system_score_codex":0.000017853215,"about_ca_system_score_gemma":0.000018703047,"threshold_uncertainty_score":0.4645145},"labels":[],"label_agreement":null},{"id":"W4403425498","doi":"10.1007/s13225-024-00540-z","title":"Classes and phyla of the kingdom Fungi","year":2024,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Université du Québec en Abitibi-Témiscamingue","funders":"","keywords":"Chytridiomycota; Phylum; Ascomycota; Biology; Phylogenetics; Evolutionary biology; Taxonomic rank; Clade; Zoology; Ecology; Paleontology; Taxon; Genetics","score_opus":0.018834440832256362,"score_gpt":0.20035773604758492,"score_spread":0.18152329521532856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403425498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99284303,0.0006607533,0.0000010330007,0.00039831048,0.000440818,0.000046917266,0.000837378,0.000026963788,0.004744797],"genre_scores_gemma":[0.9990284,0.00014873441,0.000005042297,0.00007697296,0.000082798346,3.1118512e-7,0.00002187834,1.527489e-7,0.0006357394],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968404,0.000023922628,0.00004402041,0.00009462923,0.0000839853,0.00006940674],"domain_scores_gemma":[0.99942577,0.0004980802,0.000013918137,0.000021413582,0.000015294376,0.00002551933],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00004946312,0.000042798678,0.000049186736,0.0000045554184,0.00021280572,0.000026884103,0.00010697489,0.000025126714,0.0013419287],"category_scores_gemma":[0.000024427898,0.000012984232,0.000055021872,0.00012608629,0.00000962874,0.000070181064,0.00022651402,0.00007740017,0.000072805466],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002329198,0.000025869827,0.835889,0.000026619138,0.000027806946,0.000008213654,0.00016950206,0.0000014387707,0.110050835,0.00729048,0.035148565,0.011338421],"study_design_scores_gemma":[0.00001784732,0.000075305834,0.73290074,0.000090138725,0.00004195383,0.000024575362,0.00017495335,0.0001444691,0.0033780066,0.001132192,0.26191476,0.000105046354],"about_ca_topic_score_codex":0.0009765953,"about_ca_topic_score_gemma":0.0001451715,"teacher_disagreement_score":0.2267662,"about_ca_system_score_codex":0.000005520675,"about_ca_system_score_gemma":0.0000025483664,"threshold_uncertainty_score":0.99957097},"labels":[],"label_agreement":null},{"id":"W4405613147","doi":"10.1007/s13225-024-00541-y","title":"Fungal diversity notes 1818–1918: taxonomic and phylogenetic contributions on genera and species of fungi","year":2024,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Biology; Botany","score_opus":0.016017129088498658,"score_gpt":0.21230696467381266,"score_spread":0.196289835585314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405613147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9809462,0.009152296,0.00021891635,0.000054777218,0.00016840373,0.00015419895,0.008504037,0.000020720649,0.000780474],"genre_scores_gemma":[0.9976131,0.001624914,0.00007893203,0.00008262625,0.00013924221,0.0000019335414,0.00017754531,0.0000073368788,0.00027441705],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990692,0.000053261545,0.00011642403,0.00040758567,0.00013421588,0.00021928427],"domain_scores_gemma":[0.99951917,0.00005901067,0.000041464984,0.00017167677,0.00005738118,0.00015127585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010610705,0.00017740321,0.0001888815,0.0000707054,0.00044072836,0.00003658024,0.00013594779,0.00012467716,0.000040337356],"category_scores_gemma":[0.00004895917,0.00017403509,0.0001060472,0.00006901111,0.00018829189,0.000009430656,0.0011311816,0.00009374794,0.000012953026],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024544823,0.00008572558,0.4636694,0.00009815834,0.00020576935,0.00006470627,0.00008189317,0.000019489335,0.5306123,0.0011594063,0.0024883538,0.001269369],"study_design_scores_gemma":[0.0005754161,0.0004546775,0.95817924,0.00004997539,0.00025260856,0.000029634222,0.00008672064,0.00024846673,0.033895236,0.0000771625,0.005812861,0.0003379985],"about_ca_topic_score_codex":0.00006615585,"about_ca_topic_score_gemma":0.000032082793,"teacher_disagreement_score":0.49671707,"about_ca_system_score_codex":0.00002145821,"about_ca_system_score_gemma":0.000036207664,"threshold_uncertainty_score":0.7096945},"labels":[],"label_agreement":null},{"id":"W4410742573","doi":"10.1007/s13225-025-00557-y","title":"Exploring criteria for constructing suprageneric classifications of fungi in the genomic era: a case study of suborders Agaricineae, Pluteineae, and Tricholomatineae (Agaricales)","year":2025,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Natural Science Foundation of China","keywords":"Agaricales; Mycology; Biology; Zoology; Evolutionary biology; Ecology; Botany; Taxonomy (biology)","score_opus":0.0781910060778617,"score_gpt":0.28871021825686366,"score_spread":0.21051921217900196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410742573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99773705,0.00059652573,0.00043610323,0.000019863655,0.000068041605,0.00045787607,0.00052159315,0.0000044907483,0.00015843067],"genre_scores_gemma":[0.99923503,0.000110763554,0.00050726207,0.00003464824,0.000020101665,0.00002760934,0.000044318836,0.0000041569897,0.000016125641],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924284,0.00010000959,0.00022557571,0.00023232307,0.000068256006,0.00013102045],"domain_scores_gemma":[0.9994799,0.000106943386,0.00009899043,0.00020412107,0.000081029786,0.000029040384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000206695,0.00010449918,0.00018268882,0.0001055024,0.00017777503,0.000010592841,0.00015704831,0.000045228717,0.0000019001016],"category_scores_gemma":[0.00010401531,0.000090470945,0.00005731036,0.00023499022,0.00006686779,0.000009488821,0.00022573056,0.000060811526,9.445708e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031324758,0.0005954727,0.56643474,0.00016167769,0.00014618684,0.00009526735,0.0017438054,0.000042946453,0.4271346,0.00015304703,0.00032290982,0.0028560979],"study_design_scores_gemma":[0.0029277063,0.0006339695,0.9514924,0.000031429474,0.0003412606,0.0001251172,0.039208762,0.00057180354,0.0040957495,0.000017248363,0.00031956358,0.00023496279],"about_ca_topic_score_codex":0.00027474822,"about_ca_topic_score_gemma":0.00019849434,"teacher_disagreement_score":0.42303884,"about_ca_system_score_codex":0.000009540931,"about_ca_system_score_gemma":0.000037726426,"threshold_uncertainty_score":0.3689298},"labels":[],"label_agreement":null},{"id":"W4410846663","doi":"10.1007/s13225-025-00556-z","title":"Fungal diversity notes 1919–2016: taxonomic and phylogenetic contributions to fungal taxa","year":2025,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Université du Québec à Montréal","funders":"National Natural Science Foundation of China","keywords":"Taxon; Biology; Fungal Diversity; Mycology; Phylogenetic tree; Phylogenetic diversity; Biodiversity; Ecology; Phylogenetics; Taxonomy (biology); Zoology; Diversity (politics); Evolutionary biology; Botany; Anthropology; Genetics","score_opus":0.009773330292737845,"score_gpt":0.23063293972909307,"score_spread":0.22085960943635524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410846663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837694,0.0014616562,0.0020001226,0.00028142985,0.00036159283,0.00039913022,0.010063158,0.000039594404,0.0016238802],"genre_scores_gemma":[0.99739426,0.00019352131,0.00021079766,0.00081326475,0.00016447344,0.00000921448,0.00022921852,0.000008525773,0.0009767307],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99845064,0.000097545744,0.00017435533,0.0006397272,0.00017427152,0.00046346168],"domain_scores_gemma":[0.9990139,0.000057515776,0.00007130903,0.0003612736,0.0001599188,0.00033610198],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00017676024,0.0002745433,0.0002703341,0.00011943673,0.0012984627,0.000051584342,0.00039424957,0.00020962815,0.00004501242],"category_scores_gemma":[0.0002451673,0.00029501144,0.00017222337,0.00016241866,0.00015031156,0.000012974781,0.0033954594,0.0001426047,0.00006420206],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045054496,0.00014734287,0.7845919,0.00003366615,0.00019410587,0.0000488316,0.00004025999,0.000045435772,0.19383022,0.00037969038,0.019204944,0.0010330697],"study_design_scores_gemma":[0.0012130516,0.0002966083,0.96422994,0.000037484828,0.0002769463,0.000019011166,0.00009513021,0.00007192486,0.014242784,0.00009350905,0.018923359,0.0005002302],"about_ca_topic_score_codex":0.00025145302,"about_ca_topic_score_gemma":0.00015639882,"teacher_disagreement_score":0.17963807,"about_ca_system_score_codex":0.000065509776,"about_ca_system_score_gemma":0.00012242375,"threshold_uncertainty_score":0.99995023},"labels":[],"label_agreement":null},{"id":"W4411497529","doi":"10.1007/s13225-025-00559-w","title":"Species diversity of Cladosporium in Citrus and the genetic mechanisms for C. cladosporioides complex to adapt broad host plants","year":2025,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Key Research and Development Program of Zhejiang Province; Key Technologies Research and Development Program; National Key Research and Development Program of China; Agriculture Research System of China","keywords":"Cladosporium cladosporioides; Biology; Cladosporium; Botany; Host (biology); Mycology; Phylogenetics; Gene; Ecology; Genetics; Penicillium","score_opus":0.017780455502835687,"score_gpt":0.219586716943946,"score_spread":0.2018062614411103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411497529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925529,0.00040593275,0.0025137777,0.00016018242,0.0001596736,0.00048832444,0.0031606345,0.0000074996033,0.000551113],"genre_scores_gemma":[0.9981309,0.00019635406,0.00066266634,0.00039107405,0.00003290758,0.0000052581,0.00009915028,0.000004131249,0.000477558],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991703,0.000049266564,0.00014493016,0.00029765652,0.00012749886,0.00021033628],"domain_scores_gemma":[0.9995493,0.00005278232,0.00005887994,0.00020016539,0.00006472333,0.00007411777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014025636,0.0001386696,0.00023058499,0.00006981615,0.0003427044,0.000012883318,0.00030026684,0.00009145902,0.000012706045],"category_scores_gemma":[0.00007033044,0.00011770135,0.000102668135,0.00009862172,0.0001294795,0.0000046526984,0.0014673416,0.00005498633,0.0000014220886],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005133572,0.0001756297,0.5294689,0.00013424325,0.00020005807,0.000027910657,0.00057205715,0.0000793521,0.45087865,0.0047542346,0.007886758,0.00068866345],"study_design_scores_gemma":[0.001750667,0.00014010476,0.9872809,0.000024148696,0.00006922144,0.0000024295082,0.00050051115,0.00008081703,0.007667262,0.0005297054,0.0018048739,0.00014936707],"about_ca_topic_score_codex":0.00036254906,"about_ca_topic_score_gemma":0.00037563595,"teacher_disagreement_score":0.457812,"about_ca_system_score_codex":0.000016435402,"about_ca_system_score_gemma":0.000028117569,"threshold_uncertainty_score":0.47997215},"labels":[],"label_agreement":null},{"id":"W7089623098","doi":"10.1007/s13225-025-00565-y","title":"Genomic evolution and diversity in Botryosphaeriales: insights from pan-genomic and population genetic analyses of representative species","year":2025,"lang":"en","type":"article","venue":"Fungal Diversity","topic":"Scientific Research and Technology","field":"Computer Science","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Natural Science Foundation of China","keywords":"Horizontal gene transfer; Comparative genomics; Genetic diversity; Genome; Effector; Convergent evolution; Gene; Population; Natural selection; Host (biology); Genomics","score_opus":0.05025752115279871,"score_gpt":0.2879083482852948,"score_spread":0.2376508271324961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7089623098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892364,0.00081337977,0.009386,0.000059695878,0.0001686074,0.00014082376,0.000026645774,0.000026027543,0.00014241163],"genre_scores_gemma":[0.998049,0.000097229335,0.0017500331,0.000008273664,0.000008632064,6.5707695e-7,0.0000062850445,9.3156433e-7,0.0000789576],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990453,0.00011065954,0.00013325602,0.0004007657,0.00016919443,0.00014081782],"domain_scores_gemma":[0.99947965,0.00009793425,0.00006994862,0.00026036135,0.000049715916,0.00004236397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000107736676,0.00007703696,0.00016727063,0.0003242495,0.0003474408,0.00004181067,0.0004271692,0.000064395565,0.0000070845376],"category_scores_gemma":[0.000069543246,0.00007809347,0.00002762743,0.00045683043,0.00020897058,0.00025447147,0.004044742,0.000085138694,0.0000024979906],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003304103,0.000023750166,0.97558355,0.000008381841,0.000029091818,0.000011414654,0.00091198686,0.000024851364,0.01921291,0.0032817414,0.00009799982,0.00078126084],"study_design_scores_gemma":[0.0003844801,0.000027495911,0.97634065,0.000009803602,0.000012108341,4.962846e-7,0.00034315742,0.002103327,0.0019606657,0.018748641,0.0000064263254,0.00006273859],"about_ca_topic_score_codex":0.015052839,"about_ca_topic_score_gemma":0.0012172359,"teacher_disagreement_score":0.017252246,"about_ca_system_score_codex":0.0001232234,"about_ca_system_score_gemma":0.00003222505,"threshold_uncertainty_score":0.991506},"labels":[],"label_agreement":null}]}