{"meta":{"query_hash":"8b732a073b96","filters":{"venue":"Gut Microbes"},"cohort_total":200,"direct_labels_cover":0,"predictions_cover":200,"exported":200,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/8b732a073b96","api":"https://metacan.xera.ac/api/v1/cohort?venue=Gut+Microbes"},"results":[{"id":"W1510285650","doi":"10.1080/19490976.2014.997610","title":"Maternal exposure to fish oil primes offspring to harbor intestinal pathobionts associated with altered immune cell balance","year":2015,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Child Nutrition and Water Access","field":"Nursing","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; Kelowna General Hospital; University of British Columbia","funders":"","keywords":"Biology; Offspring; Fish oil; Immune system; Polyunsaturated fatty acid; Gut flora; Firmicutes; Microbiology; Immunology; Physiology; Fatty acid; Biochemistry; Fish ; Pregnancy","score_opus":0.013355303125615295,"score_gpt":0.23012663618534654,"score_spread":0.21677133305973123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1510285650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971047,0.0006238739,0.0011891092,0.00019277351,0.000033834982,0.000016739838,0.00026979597,0.000055830275,0.00051319686],"genre_scores_gemma":[0.9936464,0.0011413932,0.0013687101,0.00015856161,0.000012864422,0.000086401466,0.00025636287,0.000021453066,0.0033079037],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998722,0.000017481445,0.000009371288,0.00004081283,0.000025841862,0.00003422113],"domain_scores_gemma":[0.99979025,0.000025202537,0.00008622675,0.000017282231,0.000019221192,0.00006187116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010815852,0.00032959075,0.00025932706,0.00024324421,0.00016823162,0.0002231609,0.00014997563,0.00030368278,0.0016740853],"category_scores_gemma":[0.00022829477,0.00016906623,0.00023914997,0.000090147565,0.0003228176,0.0001701939,0.00030824312,0.000847502,0.00016385608],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012935625,0.000090608,0.0025279785,0.00007814504,0.000014594995,0.00021576085,0.00007319837,0.000034337307,0.9924144,0.00009804043,0.0000588309,0.003100647],"study_design_scores_gemma":[0.000093137896,0.0050580623,0.07590472,0.000069780355,0.00015275613,0.00072302815,0.0005083572,0.0005133735,0.9129293,0.0004247566,0.0035932236,0.00002940423],"about_ca_topic_score_codex":0.0014323756,"about_ca_topic_score_gemma":0.0031654509,"teacher_disagreement_score":0.0016740853,"about_ca_system_score_codex":0.00035704722,"about_ca_system_score_gemma":0.00036818263,"threshold_uncertainty_score":0.005600393},"labels":[],"label_agreement":null},{"id":"W1602093891","doi":"10.1080/19490976.2015.1005474","title":"Changes in bile acids, FGF-19 and sterol absorption in response to bile salt hydrolase activeL. reuteriNCIMB 30242","year":2015,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Micropharma (Canada)","funders":"","keywords":"Lactobacillus reuteri; Bile acid; FGF19; Cholesterol; Internal medicine; Biology; Endocrinology; Feces; Fibroblast growth factor; Metabolism; Biochemistry; Gastroenterology; Bacteria; Probiotic; Microbiology; Medicine; Receptor","score_opus":0.01918438525148779,"score_gpt":0.2644749551977397,"score_spread":0.24529056994625192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1602093891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99919266,0.0002216281,0.00006083409,0.00003571051,0.000011858583,0.000039400344,0.0001369408,0.00001106186,0.00028995567],"genre_scores_gemma":[0.9957628,0.0002459626,0.00051082886,0.00010898342,0.000018767154,0.0001681046,0.0004919832,0.00001210719,0.0026804702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997142,0.000088132954,0.000025035717,0.000045549776,0.000053459164,0.00007359066],"domain_scores_gemma":[0.99977535,0.00003906776,0.000062861815,0.000021696675,0.000027113269,0.00007399151],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033025755,0.00036662642,0.0011499773,0.00021826371,0.0001748685,0.000337013,0.00024157572,0.00041481564,0.0020479816],"category_scores_gemma":[0.0003604457,0.0002201548,0.00037610295,0.00022459531,0.00029438006,0.00014656552,0.00019830801,0.00075301115,0.00031558488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.17734069,0.00659042,0.002783525,0.00015295144,0.00012177025,0.000117645955,0.00008542543,0.00011627523,0.80174744,0.000038239283,0.00025917668,0.010646445],"study_design_scores_gemma":[0.013485386,0.4184665,0.16266373,0.00003236768,0.0005268326,0.00039793472,0.00033665038,0.001069143,0.39886087,0.00008871092,0.0040105483,0.00006129538],"about_ca_topic_score_codex":0.0024003054,"about_ca_topic_score_gemma":0.0029145014,"teacher_disagreement_score":0.0024003054,"about_ca_system_score_codex":0.00035163097,"about_ca_system_score_gemma":0.0002695912,"threshold_uncertainty_score":0.0068511963},"labels":[],"label_agreement":null},{"id":"W1644750267","doi":"10.1080/19490976.2015.1016691","title":"Insights intoCampylobacter jejunicolonization of the mammalian intestinal tract using a novel mouse model of infection","year":2015,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"","keywords":"Campylobacter jejuni; Biology; Microbiology; Virulence; Pathogen; Pathogenesis; Innate immune system; Immune system; Immunology; Gastrointestinal tract; Mucus; Bacteria; Gene; Genetics","score_opus":0.10870380729987768,"score_gpt":0.3028760437493682,"score_spread":0.19417223644949055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1644750267","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017845465,0.9983839,0.00009475431,0.00026167746,0.0001623287,0.0000033019496,0.00001709697,0.0000059700615,0.0008924707],"genre_scores_gemma":[0.00073131407,0.99850047,0.00012073791,0.00012872233,0.000071896306,0.0000034142697,0.000022014632,0.0000010038202,0.0004204314],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9998884,0.00001773509,0.000018158333,0.000019157233,0.000042992888,0.000013544177],"domain_scores_gemma":[0.999775,0.00007919556,0.000035234298,0.00000671291,0.00007104964,0.000032745025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049785845,0.00057885866,0.00081596756,0.0023990371,0.00019508303,0.0007059917,0.00053984585,0.0007431953,0.002562913],"category_scores_gemma":[0.00055675925,0.00020770419,0.00037827963,0.0014949462,0.00035935547,0.0010883969,0.00053469185,0.0012040014,0.0014266152],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011160203,0.00008075843,0.000273171,0.024332426,0.00009652126,0.00022682486,0.00007848276,0.000304719,0.0058146,0.005344979,0.027166413,0.9361696],"study_design_scores_gemma":[0.000011136649,0.000106708765,0.0011022612,0.002705838,0.00008447221,0.00080607634,0.000050451486,0.00005406082,0.0008214933,0.0012616372,0.99298143,0.000014344868],"about_ca_topic_score_codex":0.0009133867,"about_ca_topic_score_gemma":0.0016752526,"teacher_disagreement_score":0.002562913,"about_ca_system_score_codex":0.0005070468,"about_ca_system_score_gemma":0.0008954398,"threshold_uncertainty_score":0.0085737705},"labels":[],"label_agreement":null},{"id":"W1842301348","doi":"10.1080/19490976.2015.1091913","title":"Coevolution of yeast mannan digestion: Convergence of the civilized human diet, distal gut microbiome, and host immunity","year":2015,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Wellcome Trust","keywords":"Biology; Microbiome; Yeast; Mannan; Host (biology); Immune system; Microbiology; Polysaccharide; Immunology; Genetics; Biochemistry","score_opus":0.021606744717080174,"score_gpt":0.2180011391016414,"score_spread":0.19639439438456122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1842301348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896203,0.0063040894,0.001282072,0.0007475415,0.000022309761,0.0000041755534,0.000038927694,0.000017573835,0.001962968],"genre_scores_gemma":[0.9971456,0.0019012378,0.00042551057,0.00014692663,0.00002496039,0.0000020194743,0.000027585933,0.0000050641684,0.0003210973],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963677,0.00017302901,0.000010605753,0.0000695796,0.000053847518,0.00005610919],"domain_scores_gemma":[0.9997949,0.000042556603,0.00003936721,0.000029773912,0.000027364502,0.000066090586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005872127,0.00017143402,0.00031310678,0.0005640754,0.0003097556,0.0010072307,0.00018413381,0.00044726962,0.0011605496],"category_scores_gemma":[0.0008024306,0.00014201037,0.0001499496,0.00037340136,0.00075582217,0.00046477624,0.00089332263,0.00047501927,0.00014472735],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022030824,0.00028532106,0.6818766,0.00027934066,0.00059361814,0.0023435415,0.0026870244,0.0012080983,0.11679294,0.0129254535,0.001498504,0.17730656],"study_design_scores_gemma":[0.000025310112,0.00062510965,0.9637299,0.00009282711,0.00016175308,0.005296426,0.0028210331,0.0020792228,0.007056152,0.009533945,0.008526252,0.000052133204],"about_ca_topic_score_codex":0.0010146347,"about_ca_topic_score_gemma":0.0011949514,"teacher_disagreement_score":0.0011605496,"about_ca_system_score_codex":0.00020856984,"about_ca_system_score_gemma":0.00028748103,"threshold_uncertainty_score":0.0038824677},"labels":[],"label_agreement":null},{"id":"W1960800379","doi":"10.4161/gmic.32155","title":"Commensal-pathogen interactions in the intestinal tract","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":264,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research; Wellcome Trust","keywords":"Heligmosomoides polygyrus; Biology; Microbiology; Immune system; Helminths; Lactobacillus; Host (biology); Immunology; Parasite hosting; Bacteria; Genetics","score_opus":0.01621209050029637,"score_gpt":0.2886072192500305,"score_spread":0.27239512874973415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1960800379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96365696,0.025202427,0.0036050682,0.00052078295,0.00005418352,0.000035981073,0.00043644648,0.0001856877,0.006302445],"genre_scores_gemma":[0.9918503,0.0046098884,0.001800859,0.00008202097,0.00002250521,0.00001681699,0.00012877621,0.000007017187,0.0014817319],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979645,0.00006489018,0.000010226164,0.000036575366,0.000047140544,0.00004468884],"domain_scores_gemma":[0.99987817,0.0000112782745,0.000035660316,0.000009037086,0.000023023678,0.00004286778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015975755,0.00020249285,0.00024490576,0.00038100014,0.00028037076,0.00047425446,0.0001359304,0.00032192754,0.0008256619],"category_scores_gemma":[0.00019600465,0.0001011038,0.000116490664,0.0003013811,0.00023557812,0.00026315,0.00040857424,0.00030173158,0.00031605037],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000290455,0.000058318525,0.019683031,0.0002970394,0.000024214383,0.00072132266,0.00013122958,0.0001901061,0.9528483,0.0005327795,0.00033354547,0.024889633],"study_design_scores_gemma":[0.00003726393,0.0019641628,0.7987188,0.00015230248,0.00009612598,0.0036894726,0.00094599905,0.0017575733,0.17020641,0.001941455,0.02044365,0.000046810994],"about_ca_topic_score_codex":0.0008188721,"about_ca_topic_score_gemma":0.0012457727,"teacher_disagreement_score":0.0008256619,"about_ca_system_score_codex":0.00019327101,"about_ca_system_score_gemma":0.0002829061,"threshold_uncertainty_score":0.0027621388},"labels":[],"label_agreement":null},{"id":"W1963586463","doi":"10.4161/gmic.21248","title":"Micronutrient supplemented probiotic yogurt for HIV-infected adults taking HAART in London, Canada","year":2012,"lang":"en","type":"article","venue":"Gut Microbes","topic":"HIV-related health complications and treatments","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Lawson Health Research Institute","keywords":"Micronutrient; Probiotic; Lactobacillus rhamnosus; Diarrhea; Medicine; Micronutrient deficiency; Human immunodeficiency virus (HIV); Biology; Immunology; Physiology; Internal medicine","score_opus":0.012324005097368558,"score_gpt":0.2757521709950616,"score_spread":0.263428165897693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963586463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99048424,0.006023455,0.000055038436,0.0005451162,0.00005581242,0.00083590636,0.0004332433,0.0000133956955,0.0015538842],"genre_scores_gemma":[0.9894302,0.005298545,0.00079758023,0.00052065635,0.000038599992,0.00040660592,0.00036742873,0.000004388976,0.0031359987],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99972373,0.000064140164,0.000024249162,0.000028793134,0.000068769,0.00009030991],"domain_scores_gemma":[0.99941945,0.00004264201,0.00006040075,0.000008579157,0.0001366379,0.00033225675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044892586,0.00037294102,0.000797409,0.00024991378,0.0021235521,0.0005827425,0.00059892563,0.00041681025,0.0023067005],"category_scores_gemma":[0.0006875274,0.00024326371,0.00037514235,0.00056787505,0.00042807317,0.00021006449,0.00034991265,0.0004952958,0.00014251418],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.20830818,0.025212748,0.3447942,0.006431279,0.001406518,0.002330938,0.007873473,0.0013286143,0.037899874,0.00057489675,0.016852163,0.346987],"study_design_scores_gemma":[0.027302144,0.052447833,0.894106,0.0008818496,0.0012893463,0.00040857084,0.0050149146,0.0010504577,0.002969549,0.000081860955,0.014349724,0.00009766148],"about_ca_topic_score_codex":0.89789927,"about_ca_topic_score_gemma":0.9694048,"teacher_disagreement_score":0.10210073,"about_ca_system_score_codex":0.008717687,"about_ca_system_score_gemma":0.016374385,"threshold_uncertainty_score":0.20540398},"labels":[],"label_agreement":null},{"id":"W1966463482","doi":"10.4161/gmic.27000","title":"What do we know about benefits of H. pylori treatment in childhood?","year":2013,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"MEDLINE; Disease; Global health; Systematic review; Medicine; Health benefits; Intensive care medicine; Alternative medicine; Family medicine; Public health; Biology; Pathology; Traditional medicine","score_opus":0.026505904699863907,"score_gpt":0.2909484914103514,"score_spread":0.2644425867104875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966463482","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002531592,0.9988355,0.000024379548,0.0004992253,0.00007676397,0.000013903625,0.000057158268,0.0000014265091,0.00023841305],"genre_scores_gemma":[0.0037332822,0.99547607,0.000096613185,0.0005072883,0.0000824815,0.00003116373,0.000028897428,0.0000012382435,0.00004297807],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99659353,0.0013360856,0.0009194073,0.00030108666,0.0006860891,0.00016378448],"domain_scores_gemma":[0.9724338,0.022346241,0.003395404,0.00021528016,0.0013450314,0.00026425166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005506443,0.0009552175,0.006406179,0.0044447198,0.0004156651,0.0029490455,0.0014083158,0.002704989,0.006661424],"category_scores_gemma":[0.0338284,0.0008685725,0.004801878,0.0049052774,0.0009444031,0.002689296,0.00091378315,0.002071012,0.0005827986],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041071422,0.00003357797,0.000755882,0.83560085,0.0044608614,0.00010531197,0.00023940213,0.00009768528,0.00020939611,0.00073443644,0.0028585065,0.15449338],"study_design_scores_gemma":[0.0004475741,0.00040749597,0.0072359075,0.89730096,0.029532043,0.00064458814,0.0006105694,0.000076413,0.0002979035,0.0011418217,0.06226573,0.000039006212],"about_ca_topic_score_codex":0.009468453,"about_ca_topic_score_gemma":0.018600719,"teacher_disagreement_score":0.009468453,"about_ca_system_score_codex":0.0028240976,"about_ca_system_score_gemma":0.0065079494,"threshold_uncertainty_score":0.02912122},"labels":[],"label_agreement":null},{"id":"W1967863803","doi":"10.4161/gmic.27252","title":"Can prebiotics and probiotics improve therapeutic outcomes for undernourished individuals?","year":2013,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Diet and metabolism studies","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"Science Foundation Ireland; Scottish Government","keywords":"Biology; Probiotic; Intensive care medicine; Medicine; Genetics; Bacteria","score_opus":0.017331763575780933,"score_gpt":0.2644717046879104,"score_spread":0.2471399411121295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967863803","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.042979915,0.6296184,0.0023565472,0.3003141,0.01384789,0.0004993282,0.0007952782,0.00015666947,0.009431921],"genre_scores_gemma":[0.26958555,0.5323721,0.021591121,0.15479866,0.012556385,0.0016771618,0.00076420646,0.00008318067,0.006571598],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.9972995,0.0015115748,0.00032690677,0.00023564337,0.00046187933,0.00016445397],"domain_scores_gemma":[0.99340194,0.0031605565,0.0011227437,0.00032918082,0.0010756389,0.000909903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009952704,0.00047494165,0.0028681199,0.0010850168,0.0005468923,0.0023218433,0.00086777675,0.0033923246,0.006338516],"category_scores_gemma":[0.020831512,0.00022850755,0.0023220147,0.0007638166,0.0009531348,0.0024359922,0.001322528,0.003914394,0.001443494],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007342746,0.0022149119,0.011340176,0.014190165,0.0023902645,0.00017124543,0.00048659492,0.0003897061,0.001807249,0.005094662,0.035552654,0.91901964],"study_design_scores_gemma":[0.018323844,0.034246117,0.17328611,0.070753716,0.015276377,0.0010537476,0.003951723,0.0018914214,0.004733194,0.04086519,0.6351522,0.00046637715],"about_ca_topic_score_codex":0.0019042197,"about_ca_topic_score_gemma":0.0060660862,"teacher_disagreement_score":0.009952704,"about_ca_system_score_codex":0.0010031147,"about_ca_system_score_gemma":0.0030970192,"threshold_uncertainty_score":0.05263561},"labels":[],"label_agreement":null},{"id":"W1972111753","doi":"10.4161/19490976.2014.969649","title":"Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Ruminant Nutrition and Digestive Physiology","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatoon Medical Imaging; University of Saskatchewan; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Methanogen; Gastrointestinal tract; Dairy industry; Dairy cattle; Animal science; Food science; Bacteria; Genetics","score_opus":0.020394452514398625,"score_gpt":0.2599580190695803,"score_spread":0.2395635665551817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972111753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99922574,0.00039432643,0.000118157775,0.000008474006,0.000001996983,0.0000045675447,0.0001605388,0.0000029832217,0.0000831757],"genre_scores_gemma":[0.9971814,0.00077321194,0.0004970948,0.000048861486,0.00000516134,0.000019065472,0.0006080841,0.000005534005,0.00086168206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99973255,0.000019975643,0.000020492438,0.00009032449,0.000067433364,0.00006920547],"domain_scores_gemma":[0.9995709,0.00006383759,0.000120783574,0.000015220912,0.00009565225,0.00013346644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024398307,0.0002592749,0.0004918721,0.00092085387,0.0002791215,0.0006073939,0.0002671454,0.00043103285,0.0006533929],"category_scores_gemma":[0.0005679763,0.00026160403,0.00023665333,0.00039604382,0.00026994356,0.00040059848,0.0003122813,0.0004229203,0.000134301],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016019252,0.0001911712,0.43081495,0.00025792234,0.0001259037,0.0009301427,0.0010746472,0.00013443074,0.55100656,0.000039394283,0.00008644277,0.013736535],"study_design_scores_gemma":[0.000004709361,0.00048806588,0.98876685,0.000015909,0.000045812132,0.00039392905,0.00052222266,0.00008298338,0.009424913,0.0000129221635,0.00023107947,0.000010650141],"about_ca_topic_score_codex":0.0072127786,"about_ca_topic_score_gemma":0.011624312,"teacher_disagreement_score":0.0072127786,"about_ca_system_score_codex":0.00040053888,"about_ca_system_score_gemma":0.0003008503,"threshold_uncertainty_score":0.014341593},"labels":[],"label_agreement":null},{"id":"W1978007556","doi":"10.4161/gmic.1.3.12013","title":"Responders and non-responders to probiotic interventions","year":2010,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Disease; Population; Intervention (counseling); Intensive care medicine; Psychological intervention; Clinical trial; Outcome (game theory); Medicine; Internal medicine; Environmental health; Nursing","score_opus":0.009940605117394332,"score_gpt":0.29369943552027944,"score_spread":0.28375883040288513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978007556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65232193,0.10625953,0.052038938,0.06317878,0.012184622,0.028015539,0.015639715,0.000581646,0.06977934],"genre_scores_gemma":[0.887437,0.011226451,0.022718284,0.027469471,0.0042796363,0.026596975,0.0031685643,0.00019857264,0.016905094],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.91625345,0.052434456,0.013037366,0.0049080234,0.010165424,0.0032013352],"domain_scores_gemma":[0.93177736,0.040223368,0.012294347,0.0065439125,0.006707954,0.0024530278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.08477399,0.0006745784,0.0033220155,0.0019186,0.00119402,0.0027263502,0.0011597594,0.0029622626,0.008416821],"category_scores_gemma":[0.07022048,0.00044426898,0.0031764447,0.0009280157,0.0019051488,0.0029138264,0.0029118862,0.0029337853,0.0029601944],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06103559,0.0030701994,0.18071787,0.016981428,0.00381439,0.00085941586,0.009765452,0.0013125489,0.0061681806,0.025468681,0.04371835,0.6470879],"study_design_scores_gemma":[0.007367434,0.03686546,0.5181552,0.01937224,0.006092703,0.0031494906,0.021542689,0.004867575,0.012963252,0.08426008,0.28436527,0.0009984606],"about_ca_topic_score_codex":0.00029635662,"about_ca_topic_score_gemma":0.00068484066,"teacher_disagreement_score":0.08477399,"about_ca_system_score_codex":0.0009375231,"about_ca_system_score_gemma":0.0014349212,"threshold_uncertainty_score":0.44833308},"labels":[],"label_agreement":null},{"id":"W1981227783","doi":"10.4161/gmic.1.4.12520","title":"The role of the immune system in regulating the microbiota","year":2010,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Biology; Immune system; Host (biology); Population; Microbiome; Gut flora; Commensalism; Disease; Gastrointestinal tract; Immunology; Bacteria; Ecology; Bioinformatics; Genetics","score_opus":0.002558712934951411,"score_gpt":0.20411366571210537,"score_spread":0.20155495277715396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981227783","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.23457699,0.70641696,0.0129123805,0.015055042,0.0021045299,0.00006400418,0.00011633967,0.0001332924,0.028620526],"genre_scores_gemma":[0.7795457,0.19880077,0.0084254425,0.0028930865,0.0016224913,0.00004716015,0.00004064691,0.000019024481,0.008605662],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99972945,0.00010165085,0.00001300038,0.000032700907,0.00005127608,0.00007196426],"domain_scores_gemma":[0.99986136,0.00003211418,0.000025071613,0.000006450453,0.00002503637,0.00004995562],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051495095,0.00034790524,0.00032961054,0.0004762847,0.00038499554,0.0011983766,0.00026376513,0.0007840273,0.0013877037],"category_scores_gemma":[0.00024556162,0.00009926531,0.00025557476,0.00014998607,0.0008958409,0.0007370074,0.0006222931,0.00088387926,0.00037684478],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010001806,0.0003383272,0.010725011,0.0017610912,0.00011526966,0.00344934,0.0007445407,0.001198021,0.5917785,0.059236653,0.006898394,0.32275468],"study_design_scores_gemma":[0.00030831617,0.0055524283,0.10873755,0.0021015983,0.00042158624,0.016853735,0.0028959746,0.005865092,0.21494149,0.08845249,0.5536484,0.00022133664],"about_ca_topic_score_codex":0.00029822817,"about_ca_topic_score_gemma":0.00032253552,"teacher_disagreement_score":0.0013877037,"about_ca_system_score_codex":0.00032526057,"about_ca_system_score_gemma":0.00036783828,"threshold_uncertainty_score":0.0046423674},"labels":[],"label_agreement":null},{"id":"W1982040117","doi":"10.4161/19490976.2014.990784","title":"Lactobacillus rhamnosusCNCM I-3690 and the commensal bacteriumFaecalibacterium prausnitziiA2-165 exhibit similar protective effects to induced barrier hyper-permeability in mice","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":211,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Institut National de la Recherche Agronomique; Crohn's and Colitis Foundation of Canada","keywords":"Lactobacillus rhamnosus; Faecalibacterium prausnitzii; Barrier function; Intestinal permeability; Biology; Microbiology; Probiotic; Gut flora; Tight junction; Occludin; Cell biology; Immunology; Bacteria; Genetics","score_opus":0.005849010503754797,"score_gpt":0.225142055559271,"score_spread":0.2192930450555162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982040117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993614,0.0020054397,0.001581493,0.00022628794,0.000066145156,0.00007944431,0.00078725524,0.00010714447,0.001532838],"genre_scores_gemma":[0.98756546,0.0014463145,0.0052650687,0.00019666563,0.000020846977,0.00008452347,0.0019958988,0.000031516774,0.003393681],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996878,0.000057368372,0.0000404352,0.000047896236,0.00010473978,0.00006183143],"domain_scores_gemma":[0.9998178,0.000009378933,0.00007438259,0.0000123885175,0.00001973472,0.000066279434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014384792,0.00070603506,0.0004724372,0.00032501787,0.00013902095,0.00021895049,0.0002632082,0.000390732,0.0012567454],"category_scores_gemma":[0.00012109465,0.0001686444,0.00052810647,0.00026726536,0.00019337535,0.00016851033,0.0003039768,0.0006884424,0.00033622887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052703725,0.000115424205,0.00020463984,0.00006560848,0.0000115934145,0.000036503112,0.000007454987,0.000046192203,0.9978604,0.000028056911,0.00004020224,0.0010569076],"study_design_scores_gemma":[0.00007724511,0.004750323,0.007527386,0.000021013035,0.000052245876,0.00046226892,0.000051319606,0.0003293091,0.9834126,0.00003504272,0.0032689834,0.000012173607],"about_ca_topic_score_codex":0.0012201669,"about_ca_topic_score_gemma":0.0013796168,"teacher_disagreement_score":0.0012567454,"about_ca_system_score_codex":0.00020127113,"about_ca_system_score_gemma":0.00031930098,"threshold_uncertainty_score":0.0042042136},"labels":[],"label_agreement":null},{"id":"W1983921084","doi":"10.4161/gmic.18604","title":"The continuum of intestinal CD4+T cell adaptations in host-microbial mutualism","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Inselspital, Universitätsspital Bern","keywords":"Biology; Homeostasis; Inflammation; Mutualism (biology); Cell biology; Dysbiosis; Immunology; T cell; Gut flora; Cell; Immune system; Microbiology; Genetics; Ecology","score_opus":0.01601690143730515,"score_gpt":0.23270503471028878,"score_spread":0.21668813327298364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983921084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99467224,0.0013892663,0.0014900791,0.00022965233,0.000009926342,0.0000063463785,0.000034859542,0.000045048535,0.0021225084],"genre_scores_gemma":[0.99817944,0.00033807088,0.0008431388,0.00010365079,0.000015267802,0.00001275456,0.000025413146,0.000004842406,0.0004774905],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998167,0.00006845051,0.000008927556,0.000028113418,0.00003316702,0.000044697594],"domain_scores_gemma":[0.9998834,0.00002073948,0.000027443348,0.000016899827,0.000011172427,0.000040372703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027167398,0.00015604499,0.00021925842,0.00030680123,0.00016860531,0.000608293,0.00017303292,0.00041178765,0.0011242453],"category_scores_gemma":[0.00023510399,0.00016082652,0.000096808624,0.00015003885,0.00062967546,0.00051697745,0.00050418667,0.00052588526,0.0002751369],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005153214,0.000039397524,0.0049231364,0.00006281397,0.000007880766,0.00035063867,0.000095065225,0.00013617764,0.9830273,0.001135715,0.000110370296,0.00959636],"study_design_scores_gemma":[0.0003094082,0.0038560696,0.41664734,0.00012447248,0.00011192362,0.011033142,0.0019803776,0.005900059,0.51003724,0.03139687,0.01852524,0.00007777991],"about_ca_topic_score_codex":0.00006076731,"about_ca_topic_score_gemma":0.00010086922,"teacher_disagreement_score":0.0011242453,"about_ca_system_score_codex":0.00020188346,"about_ca_system_score_gemma":0.00011436794,"threshold_uncertainty_score":0.0037609339},"labels":[],"label_agreement":null},{"id":"W1987631298","doi":"10.4161/gmic.1.6.14079","title":"The potential role for probiotic yogurt for people living with HIV/AIDS","year":2010,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"Erasmus+","keywords":"Probiotic; Human immunodeficiency virus (HIV); Agriculture; Environmental health; Developing country; Health benefits; Biology; Business; Biotechnology; Medicine; Immunology; Traditional medicine","score_opus":0.012798409736595118,"score_gpt":0.2322969757844834,"score_spread":0.21949856604788828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987631298","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007064555,0.9992213,0.000023671262,0.00030563393,0.00011725586,0.0000015943997,0.0000071702743,0.0000017875393,0.0002509556],"genre_scores_gemma":[0.00055738236,0.9987754,0.00009694735,0.0001892308,0.000110149595,0.0000030730923,0.000009823284,6.26252e-7,0.00025724393],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99982256,0.0000444368,0.000030372705,0.000028113824,0.000056138568,0.000018357543],"domain_scores_gemma":[0.9995883,0.00021784593,0.000057974994,0.00000855464,0.000095417934,0.000031874923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007749415,0.0006387268,0.0012161569,0.0019489467,0.0003600274,0.0008592669,0.0006553699,0.0016235944,0.0034170162],"category_scores_gemma":[0.0010643855,0.00021329086,0.00044978684,0.0021236097,0.00048454088,0.0012514252,0.00075296883,0.0016080061,0.001289472],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001059076,0.000079346326,0.00030956246,0.024982233,0.00012273634,0.00026272648,0.00013053224,0.00014126193,0.0013884088,0.0032053832,0.026228607,0.94304323],"study_design_scores_gemma":[0.00003798394,0.00013661021,0.0018665957,0.008898119,0.00020030921,0.0015372917,0.0002208863,0.00009032803,0.00049996277,0.0017069821,0.98478717,0.000017650851],"about_ca_topic_score_codex":0.0021264066,"about_ca_topic_score_gemma":0.003718653,"teacher_disagreement_score":0.0034170162,"about_ca_system_score_codex":0.00037527096,"about_ca_system_score_gemma":0.0011070478,"threshold_uncertainty_score":0.011431038},"labels":[],"label_agreement":null},{"id":"W1995158078","doi":"10.4161/gmic.2.3.16297","title":"The Cri1 locus is the common genetic cause of susceptibility toCitrobacter rodentiuminfection in C3H and FVB mouse strains.","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Locus (genetics); Genotype; Genotyping; Allele; Citrobacter; Inbred strain; Pathogen; Microbiology; Immunology; Genetics; Gene; Enterobacteriaceae; Escherichia coli","score_opus":0.019671645202472745,"score_gpt":0.2695472068422544,"score_spread":0.24987556163978167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995158078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98726684,0.0018247608,0.0067696264,0.00018664532,0.000042672982,0.00009661023,0.0020682653,0.0003555643,0.001388859],"genre_scores_gemma":[0.9881937,0.0010523986,0.006204902,0.00011342516,0.0000191482,0.00008075359,0.0017783286,0.00014311809,0.0024142668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999373,0.000074322204,0.000059987506,0.00023621373,0.00014018295,0.00011621919],"domain_scores_gemma":[0.9987326,0.000108187254,0.0007699863,0.000065843175,0.000039201066,0.0002841707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025841483,0.001107273,0.00051354,0.0013034238,0.00033553722,0.00037739807,0.00059338455,0.0006537573,0.0021867394],"category_scores_gemma":[0.00028338254,0.00035315903,0.00042975319,0.00048644966,0.00050680066,0.00018866717,0.00056648924,0.0010690677,0.00058503984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017363379,0.0000421955,0.001170983,0.00004602584,0.000010529608,0.000168044,0.000020842084,0.000022475013,0.99707043,0.00006275706,0.000051430416,0.001160543],"study_design_scores_gemma":[0.00007819606,0.0011132678,0.10236103,0.00006920484,0.000093759416,0.007167874,0.00011096702,0.00091625587,0.88316375,0.00009988046,0.0047793305,0.00004639963],"about_ca_topic_score_codex":0.0015927311,"about_ca_topic_score_gemma":0.0023011412,"teacher_disagreement_score":0.0021867394,"about_ca_system_score_codex":0.00041193032,"about_ca_system_score_gemma":0.00028405339,"threshold_uncertainty_score":0.0073153973},"labels":[],"label_agreement":null},{"id":"W2004270010","doi":"10.4161/gmic.19936","title":"Special Edition of Gut Microbes","year":2012,"lang":"he","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Diarrheal disease; Diarrhea; Diarrheal diseases; Disease; Public health; Gastrointestinal disease; Environmental health; Medicine; Internal medicine; Pathology","score_opus":0.009042206618566565,"score_gpt":0.24648606141685742,"score_spread":0.23744385479829086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004270010","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00051991956,0.051692903,0.0010283492,0.019026017,0.87155104,0.00009798315,0.0006895722,0.00044004642,0.054954242],"genre_scores_gemma":[0.002370671,0.055437215,0.0008840839,0.020807384,0.7540001,0.00014025447,0.0011118923,0.00028414576,0.16496423],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988319,0.00016441556,0.00017425235,0.00018664762,0.00050445704,0.00013834937],"domain_scores_gemma":[0.9942471,0.0013830251,0.000525767,0.000373395,0.00227154,0.0011991838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010949564,0.0026080592,0.0024738794,0.004289984,0.0010892618,0.004533501,0.0021655054,0.003042155,0.09668381],"category_scores_gemma":[0.005307254,0.0005206247,0.0018448953,0.0026108888,0.0011207504,0.002406817,0.0016291443,0.0037270517,0.06474504],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000442381,0.000022800963,0.00017381554,0.00039449584,0.00001067184,0.0001549487,0.0000112487705,0.000046318353,0.00034949195,0.0004386116,0.9749724,0.023381015],"study_design_scores_gemma":[0.000009186941,0.00004370023,0.0007644881,0.0003669004,0.000012085477,0.0007457273,0.000020819116,0.000068619695,0.000115658826,0.00060164434,0.9972395,0.000011651011],"about_ca_topic_score_codex":0.0016581363,"about_ca_topic_score_gemma":0.0033920875,"teacher_disagreement_score":0.09668381,"about_ca_system_score_codex":0.0012143193,"about_ca_system_score_gemma":0.0016017382,"threshold_uncertainty_score":0.32343954},"labels":[],"label_agreement":null},{"id":"W2020741632","doi":"10.4161/gmic.2.5.18603","title":"Fusobacterium nucleatum","year":2011,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Otolaryngology and Infectious Diseases","field":"Medicine","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Bible College; University of Calgary; University of Guelph","funders":"Canadian Institutes of Health Research","keywords":"Fusobacterium nucleatum; Virulence; Biology; Microbiology; Pathogen; Host (biology); Disease; Inflammatory bowel disease; Bacteria; Genetics; Gene; Pathology; Medicine","score_opus":0.057703029105953256,"score_gpt":0.3344811276203618,"score_spread":0.27677809851440854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020741632","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008286351,0.99364614,0.0003200482,0.00027711288,0.00034651547,0.000009136308,0.00003143161,0.000016345644,0.0045247534],"genre_scores_gemma":[0.013284328,0.97882473,0.0007052916,0.000413449,0.0004216733,0.000014252472,0.00012866737,0.0000034181603,0.0062042405],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99982136,0.000025858864,0.000017876997,0.00003438305,0.00007626926,0.000024237312],"domain_scores_gemma":[0.99984205,0.000038890073,0.000040909916,0.0000056150343,0.000044012617,0.000028521752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024639443,0.001165032,0.00085739687,0.001959811,0.00044899757,0.0006996124,0.0004910364,0.0010793051,0.0034196544],"category_scores_gemma":[0.00039513403,0.0001582149,0.0002409907,0.0010185557,0.00033441404,0.0009717918,0.0005758302,0.00063589966,0.0037960983],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006782898,0.000048998536,0.0003692575,0.004995835,0.000020293015,0.0007547551,0.00008277525,0.00016660462,0.009992846,0.0013191338,0.018468231,0.96371347],"study_design_scores_gemma":[0.000009653827,0.00013236627,0.0022375078,0.0018669325,0.000043073564,0.005460568,0.00010602529,0.000075920565,0.004001826,0.0010130154,0.9850381,0.0000148962345],"about_ca_topic_score_codex":0.0020314404,"about_ca_topic_score_gemma":0.0025495868,"teacher_disagreement_score":0.0034196544,"about_ca_system_score_codex":0.00044527106,"about_ca_system_score_gemma":0.00047904422,"threshold_uncertainty_score":0.0114399195},"labels":[],"label_agreement":null},{"id":"W2021540314","doi":"10.4161/gmic.2.3.16483","title":"Mucosal changes in a long-term bovine intestinal segment model following removal of ingesta and microflora","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Ileum; Immune system; Escherichia coli; Crypt; Peyer's patch; Epithelium; Intestinal mucosa; Jejunum; Immunology; Internal medicine; Endocrinology; Biochemistry","score_opus":0.045431680764771366,"score_gpt":0.24214461591441497,"score_spread":0.1967129351496436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021540314","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479336,0.0022188309,0.0015727535,0.00007828024,0.000047993104,0.00006901154,0.00024826144,0.000055427536,0.0009159505],"genre_scores_gemma":[0.99507695,0.0007268309,0.0013498852,0.00008399436,0.000014421842,0.0000840478,0.0005881646,0.00001318023,0.0020624725],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99957067,0.000064053944,0.00003175488,0.00011306629,0.000092520386,0.00012804272],"domain_scores_gemma":[0.99952114,0.000060537404,0.00013808867,0.000066497414,0.00005005186,0.00016370886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041190014,0.0005381035,0.00047201343,0.0004791401,0.00035896464,0.0005181412,0.0003796134,0.00073656713,0.0009908613],"category_scores_gemma":[0.00029188304,0.0003325973,0.00049080706,0.00027955775,0.0005313364,0.00046853238,0.00035655385,0.0012940674,0.0003879276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016632862,0.0003345657,0.0016332946,0.00009794484,0.000015507117,0.00051719195,0.00010943316,0.00012693644,0.9938845,0.00005146447,0.000047920505,0.0015179741],"study_design_scores_gemma":[0.00036160165,0.042725272,0.1345318,0.00013975968,0.00030670152,0.0069304532,0.0009268007,0.004686594,0.80236053,0.00017877072,0.0067883385,0.00006328287],"about_ca_topic_score_codex":0.0023655961,"about_ca_topic_score_gemma":0.00521548,"teacher_disagreement_score":0.0023655961,"about_ca_system_score_codex":0.00085494947,"about_ca_system_score_gemma":0.00034359662,"threshold_uncertainty_score":0.0062031746},"labels":[],"label_agreement":null},{"id":"W2023157760","doi":"10.4161/gmic.1.2.11685","title":"The bacterial virulence factor NleA's involvement in intestinal tight junction disruption during EnteropathogenicE. coliinfection is independent of its putative PDZ binding domain","year":2010,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"PDZ domain; Biology; Tight junction; Enteropathogenic Escherichia coli; Effector; Cell biology; Virulence; Type three secretion system; Secretion; Claudin; Microbiology; Genetics; Gene; Biochemistry","score_opus":0.010123960179572808,"score_gpt":0.2662841675042013,"score_spread":0.2561602073246285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023157760","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984596,0.00031663472,0.0008893928,0.000037361402,0.0000056467666,0.000004849672,0.00004211542,0.000014134517,0.00023037358],"genre_scores_gemma":[0.9986401,0.0001293965,0.0006778713,0.00001808951,0.000001739466,0.000005053677,0.00015375613,0.0000045806587,0.00036930287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99988675,0.000027464044,0.000011930763,0.00001906618,0.000024823623,0.000029935552],"domain_scores_gemma":[0.9998853,0.000023763809,0.000038731265,0.000015887701,0.000009770707,0.000026502885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011367936,0.00023307651,0.00016510543,0.00010789491,0.000120930454,0.00025899004,0.00013466891,0.0002562477,0.00052567554],"category_scores_gemma":[0.00016675102,0.00009801945,0.00022009121,0.00008586651,0.0002798092,0.00019485531,0.00018876018,0.00043600117,0.00018875209],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008535272,0.0000142482095,0.00023681569,0.0000100183115,0.0000026117484,0.00007330829,0.0000051040543,0.000023109622,0.99923456,0.0000338317,0.000005462576,0.00027545448],"study_design_scores_gemma":[0.000012983227,0.00018608145,0.012358892,0.0000034722573,0.0000142999625,0.00083718606,0.000033943616,0.00061714783,0.9853774,0.0000346846,0.000519866,0.000004013835],"about_ca_topic_score_codex":0.00044556358,"about_ca_topic_score_gemma":0.00036988183,"teacher_disagreement_score":0.00052567554,"about_ca_system_score_codex":0.0002605208,"about_ca_system_score_gemma":0.00011213985,"threshold_uncertainty_score":0.0018901825},"labels":[],"label_agreement":null},{"id":"W2027363875","doi":"10.4161/gmic.29795","title":"Microbiome manipulation modifies sex-specific risk for autoimmunity","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Biology; Microbiome; Autoimmunity; Disease; Autoimmune disease; Immunology; Nod; Immune system; NOD mice; Phenotype; Diabetes mellitus; Bioinformatics; Genetics; Antibody; Medicine; Gene; Endocrinology; Internal medicine","score_opus":0.009006117702880255,"score_gpt":0.21778996353023003,"score_spread":0.20878384582734977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027363875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901502,0.00312986,0.0025534797,0.00036156442,0.00020679722,0.000028977487,0.0012066712,0.00021903196,0.0021434142],"genre_scores_gemma":[0.99021906,0.001637235,0.0020713205,0.00029786496,0.000047108766,0.000074312644,0.00049297325,0.000108069515,0.0050521297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99964416,0.00008165909,0.000018767121,0.000119308665,0.000056876466,0.000079292055],"domain_scores_gemma":[0.99953604,0.000065320324,0.00016749934,0.00006303957,0.00002902652,0.0001390036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030746154,0.00035640495,0.0004215385,0.000553731,0.0002395692,0.00059338287,0.00021195586,0.000482112,0.0050530364],"category_scores_gemma":[0.0004914604,0.00022963542,0.00031240546,0.00024747106,0.0003343774,0.00025746776,0.0004088505,0.0007208181,0.0004986212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029928314,0.00036023417,0.0053640814,0.00009807633,0.000084547246,0.0000927177,0.000077160774,0.00008214482,0.9782582,0.00033951586,0.00027471478,0.011975648],"study_design_scores_gemma":[0.00034958747,0.009245667,0.25073728,0.00012061376,0.00057243474,0.0007881742,0.0004391844,0.0017856695,0.7155173,0.0017094356,0.01862769,0.00010690811],"about_ca_topic_score_codex":0.00039961442,"about_ca_topic_score_gemma":0.00088162505,"teacher_disagreement_score":0.0050530364,"about_ca_system_score_codex":0.00027160379,"about_ca_system_score_gemma":0.00024336299,"threshold_uncertainty_score":0.016904116},"labels":[],"label_agreement":null},{"id":"W2031431575","doi":"10.4161/gmic.22973","title":"The intestinal microbiome, probiotics and prebiotics in neurogastroenterology","year":2012,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":248,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Intestinal Microbiome; Microbiome; Gut microbiome; Probiotic; Bioinformatics; Bacteria; Genetics","score_opus":0.04609193719761056,"score_gpt":0.31448070326891364,"score_spread":0.2683887660713031,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031431575","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000054600157,0.99948597,0.000027686829,0.00011866606,0.00011718596,0.000001381046,0.0000026946072,0.0000014329061,0.00019030666],"genre_scores_gemma":[0.00047085373,0.99904543,0.00007712987,0.00006550961,0.000101911595,0.000002513859,0.0000056293084,4.6967688e-7,0.00023057668],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99979466,0.000052668034,0.000034701363,0.000029084109,0.00007011032,0.000018853818],"domain_scores_gemma":[0.99968016,0.00015741849,0.000050511426,0.000008577926,0.00007528118,0.00002800736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062126014,0.0010797288,0.0015590747,0.0025889052,0.00032860777,0.001035039,0.0007210452,0.0015136306,0.0027841006],"category_scores_gemma":[0.00078922155,0.00027212503,0.0004894289,0.0031480016,0.000599579,0.001499702,0.0007956184,0.0014703156,0.0011204829],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009752383,0.00009490705,0.00027934345,0.021278739,0.00012185759,0.00023949517,0.0000960212,0.00028085348,0.0012917449,0.002161857,0.017123649,0.95693403],"study_design_scores_gemma":[0.0000369771,0.00017533127,0.0038214023,0.014444589,0.00024410659,0.0024391788,0.00024571214,0.00015655321,0.0006539491,0.0036479277,0.9741,0.00003422681],"about_ca_topic_score_codex":0.0013890022,"about_ca_topic_score_gemma":0.0023821024,"teacher_disagreement_score":0.0027841006,"about_ca_system_score_codex":0.0005527004,"about_ca_system_score_gemma":0.0012161069,"threshold_uncertainty_score":0.009313762},"labels":[],"label_agreement":null},{"id":"W2032378902","doi":"10.4161/gmic.2.2.15610","title":"A comparative analysis of the effect of antibiotic treatment and enteric infection on intestinal homeostasis","year":2011,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Diet and metabolism studies","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Metabolome; Biology; Antibiotics; Homeostasis; Gut flora; Microbiology; Hormone; Salmonella; Commensalism; Immunology; Metabolomics; Bacteria; Bioinformatics; Endocrinology","score_opus":0.05305179139702304,"score_gpt":0.3496321692437379,"score_spread":0.29658037784671487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032378902","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002402881,0.99911505,0.00005850606,0.000063967556,0.000057944228,0.0000023743316,0.000011081368,0.0000025030652,0.00044833368],"genre_scores_gemma":[0.0012199678,0.99824893,0.00014159468,0.00006736476,0.00006105356,0.000005031806,0.00002262602,9.007002e-7,0.0002326008],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99983764,0.000032637647,0.000031486674,0.0000359489,0.000049829207,0.000012501217],"domain_scores_gemma":[0.99972075,0.0001374153,0.000046610297,0.00000893387,0.000063115236,0.000023096096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045215117,0.0007038722,0.0016021408,0.0020176126,0.00017489986,0.00065138895,0.00057712256,0.0008171012,0.002036927],"category_scores_gemma":[0.0006060437,0.00019526522,0.00044854323,0.0021066363,0.00033627954,0.00084119913,0.00043894615,0.0005857886,0.0010355272],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025691895,0.0000828933,0.000418383,0.030416783,0.00020168819,0.00046518375,0.00006389701,0.00014995571,0.0056732143,0.0010463396,0.007880866,0.953344],"study_design_scores_gemma":[0.00007287973,0.0008251417,0.012683359,0.010364648,0.0008668523,0.008659976,0.00023648482,0.0001454883,0.0060356623,0.0018535824,0.95818084,0.00007510926],"about_ca_topic_score_codex":0.00064307364,"about_ca_topic_score_gemma":0.0009127051,"teacher_disagreement_score":0.002036927,"about_ca_system_score_codex":0.0004051966,"about_ca_system_score_gemma":0.0005869707,"threshold_uncertainty_score":0.006814182},"labels":[],"label_agreement":null},{"id":"W2032854797","doi":"10.4161/gmic.22596","title":"Reprofiled drug targets ancient protozoans","year":2013,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal General Hospital","funders":"National Institute of Allergy and Infectious Diseases; Michigan State University","keywords":"Auranofin; Entamoeba histolytica; Giardia lamblia; Biology; Antiparasitic; Microbiology; Drug; Nitazoxanide; Cryptosporidium parvum; Antiparasitic agent; Pharmacology; Drug repositioning; Thioredoxin reductase; Thioredoxin; Biochemistry; Medicine; Enzyme; Immunology","score_opus":0.036828749416887956,"score_gpt":0.3416056089571228,"score_spread":0.3047768595402348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032854797","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025621657,0.99211663,0.0009048485,0.00026781828,0.00015652365,0.000032583757,0.00008464182,0.000046438316,0.0038283544],"genre_scores_gemma":[0.016560543,0.97728753,0.0013917071,0.0004860774,0.0001388134,0.000037569353,0.0002021814,0.000008568761,0.0038870783],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998423,0.000025660393,0.000014331661,0.00003232666,0.00006359111,0.000021724052],"domain_scores_gemma":[0.9998609,0.000047491227,0.00002415932,0.000006195899,0.000049536877,0.000011618885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031135854,0.0007555629,0.0011658969,0.0019594326,0.00019233108,0.00059506577,0.0005639368,0.0006218798,0.0028071776],"category_scores_gemma":[0.00035470305,0.00023154618,0.0004482043,0.00103698,0.00030694666,0.0006598777,0.00042068047,0.00086514803,0.0016022857],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013414757,0.00014851459,0.00040862185,0.011794387,0.00008787802,0.0005674102,0.000058510694,0.00070864445,0.030615604,0.0026065882,0.010235157,0.9426346],"study_design_scores_gemma":[0.0000685953,0.0005273985,0.002014919,0.0018451826,0.00020206341,0.002780555,0.00008035297,0.00059398013,0.026579786,0.0014696579,0.96380377,0.000033733777],"about_ca_topic_score_codex":0.0005803981,"about_ca_topic_score_gemma":0.0011316146,"teacher_disagreement_score":0.0028071776,"about_ca_system_score_codex":0.00036410935,"about_ca_system_score_gemma":0.00044718198,"threshold_uncertainty_score":0.009390891},"labels":[],"label_agreement":null},{"id":"W2036514157","doi":"10.4161/19490976.2014.983775","title":"The influence of the human microbiome and probiotics on cardiovascular health","year":2014,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":178,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Lawson Health Research Institute; Western University","funders":"","keywords":"Probiotic; Biology; Disease; Microbiome; Obesity; Etiology; Gut microbiome; Immunology; Bioinformatics; Medicine; Bacteria; Internal medicine; Genetics","score_opus":0.015565947617037742,"score_gpt":0.3020380249694982,"score_spread":0.2864720773524605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036514157","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018646538,0.9986639,0.000104810984,0.00021638077,0.0001271963,0.0000019132958,0.0000119584765,0.00000483203,0.00068261113],"genre_scores_gemma":[0.00088974304,0.9984485,0.00014861848,0.00007878996,0.00009796577,0.0000024117544,0.000012061855,8.3098e-7,0.000321135],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998275,0.00003382719,0.00002100396,0.000028636136,0.00007212827,0.000016912909],"domain_scores_gemma":[0.9998267,0.00007111786,0.000026664671,0.0000054143384,0.00004833766,0.000021715925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036185543,0.0005248472,0.00087074813,0.0013000458,0.00024579538,0.000766004,0.00035364184,0.0008251203,0.0025094957],"category_scores_gemma":[0.00056501443,0.00014740828,0.00028881288,0.0014138186,0.000311717,0.0007113866,0.00072786695,0.0008888613,0.0015430005],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005153667,0.000036639336,0.00033292526,0.010157463,0.00006239816,0.00016387444,0.000061140985,0.00012680214,0.003473481,0.0019414009,0.010478632,0.9731137],"study_design_scores_gemma":[0.000009091951,0.00012984994,0.0031180277,0.00486053,0.00013268593,0.0019290444,0.00011758092,0.000069670765,0.0013363711,0.0020028742,0.98627067,0.00002358266],"about_ca_topic_score_codex":0.00065976515,"about_ca_topic_score_gemma":0.0009775278,"teacher_disagreement_score":0.0025094957,"about_ca_system_score_codex":0.00028016663,"about_ca_system_score_gemma":0.0007331232,"threshold_uncertainty_score":0.008395135},"labels":[],"label_agreement":null},{"id":"W2038108911","doi":"10.4161/19490976.2014.969639","title":"Community-driven research on environmental sources ofH. pyloriinfection in arctic Canada","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Biology; Arctic; Environmental resource management; Environmental planning; Ecology; Geography","score_opus":0.030024009326277586,"score_gpt":0.2816080674954604,"score_spread":0.25158405816918283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038108911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873482,0.003009552,0.0012470832,0.0012795493,0.000048517628,0.000086419794,0.0026095014,0.000016959037,0.004354205],"genre_scores_gemma":[0.9946127,0.0019684383,0.0013910151,0.00026263442,0.000014093695,0.000053584034,0.0007540507,0.00000996049,0.0009335232],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99685585,0.000916077,0.000109832254,0.00042456842,0.00091262214,0.00078108144],"domain_scores_gemma":[0.99145526,0.0014440046,0.0016199405,0.00034091788,0.0036185388,0.001521358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031452032,0.00040423384,0.0006010334,0.0018742388,0.0034617123,0.0017827454,0.0012483685,0.00038980966,0.0017775256],"category_scores_gemma":[0.008809681,0.00030274875,0.0008716368,0.0046492475,0.0010809134,0.0004934253,0.0016755571,0.00066892063,0.00010892931],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078981626,0.000037281465,0.9824289,0.00019528874,0.00028964767,0.00008310108,0.0033488758,0.00037498135,0.00023606583,0.00043005397,0.0010322963,0.011464569],"study_design_scores_gemma":[0.0000059083254,0.00004185024,0.9898573,0.00026116995,0.00014072382,0.00004285013,0.006263961,0.00044757096,0.00016288576,0.00010809506,0.002646187,0.000021624952],"about_ca_topic_score_codex":0.993849,"about_ca_topic_score_gemma":0.9959627,"teacher_disagreement_score":0.026568914,"about_ca_system_score_codex":0.026568914,"about_ca_system_score_gemma":0.05784996,"threshold_uncertainty_score":0.19277185},"labels":[],"label_agreement":null},{"id":"W2039073863","doi":"10.4161/gmic.21750","title":"Helicobacter pyloritargets dendritic cells to induce immune tolerance, promote persistence and confer protection against allergic asthma","year":2012,"lang":"en","type":"review","venue":"Gut Microbes","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Immunology; Biology; Helicobacter pylori; FOXP3; Immune system; Immune tolerance; Regulatory T cell; Peripheral tolerance; Acquired immune system; Allergy; Immunity; Inflammasome; Dendritic cell; Effector; Interleukin 10; T cell; Inflammation; IL-2 receptor","score_opus":0.03921990976777124,"score_gpt":0.24464545828642326,"score_spread":0.20542554851865202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039073863","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027586066,0.99731076,0.00019631909,0.00044590855,0.00035619788,0.0000035707365,0.00001918042,0.000010371293,0.0013818828],"genre_scores_gemma":[0.0015207443,0.9964948,0.00025096085,0.00020443505,0.00028526166,0.0000053020544,0.000039127706,0.0000019993658,0.0011972382],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99992406,0.0000127678395,0.000008775098,0.000011869425,0.00003264327,0.0000097853535],"domain_scores_gemma":[0.99988604,0.000028396611,0.000019858033,0.000004864165,0.000041430463,0.000019280207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027839222,0.0006457856,0.00059393456,0.00095356716,0.00015770085,0.00050186884,0.00042604477,0.0005493438,0.0021059609],"category_scores_gemma":[0.00024082419,0.0001176584,0.00020814927,0.0011819004,0.00029440253,0.000723164,0.00036588026,0.0009131043,0.0018463404],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009210005,0.000039713035,0.00021305088,0.005897521,0.000033976656,0.00011512716,0.000027535187,0.0001882674,0.0060387272,0.0019376234,0.031497084,0.9539192],"study_design_scores_gemma":[0.00001357018,0.00009729209,0.0012790427,0.0012499715,0.00003913465,0.00090534333,0.000038064034,0.000088828,0.0016646724,0.0013895215,0.99322355,0.00001097087],"about_ca_topic_score_codex":0.00048745546,"about_ca_topic_score_gemma":0.0010283808,"teacher_disagreement_score":0.0021059609,"about_ca_system_score_codex":0.0003959072,"about_ca_system_score_gemma":0.0005470591,"threshold_uncertainty_score":0.00704509},"labels":[],"label_agreement":null},{"id":"W2042347542","doi":"10.4161/gmic.21656","title":"Enterohemorrhagic and enteropathogenic Escherichia coli evolved different strategies to resist antimicrobial peptides","year":2012,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Microbiology; Enteropathogenic Escherichia coli; Proteases; Intimin; Antimicrobial peptides; Escherichia coli; Bacterial outer membrane; Protease; Antimicrobial; Gene; Enzyme; Enterobacteriaceae; Genetics; Biochemistry","score_opus":0.029167702459599702,"score_gpt":0.26913979536801147,"score_spread":0.23997209290841176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042347542","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027349518,0.99816114,0.00015231041,0.00025869443,0.00016334697,0.0000027542817,0.0000107925025,0.000006985476,0.0009705183],"genre_scores_gemma":[0.0012519582,0.9972573,0.00025582837,0.00017123284,0.00016477716,0.0000060428265,0.000030239124,0.0000015653874,0.0008610067],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999853,0.000017914614,0.000022497321,0.000033198914,0.00005472089,0.000018594332],"domain_scores_gemma":[0.9997563,0.00006867456,0.00004301263,0.000009052183,0.000080277205,0.0000426729],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044949856,0.00089941977,0.0011043288,0.0015217069,0.00024477995,0.00086449576,0.00069529074,0.001040425,0.001874628],"category_scores_gemma":[0.00047902067,0.00023985008,0.00023408135,0.0016267612,0.00060891017,0.0015894845,0.0006200186,0.0013931984,0.0019778672],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008331033,0.000059451944,0.00027729516,0.005296366,0.000033256336,0.00015215315,0.000032544063,0.00018725851,0.0030081382,0.0019549741,0.011162406,0.97775286],"study_design_scores_gemma":[0.00001756481,0.00013294719,0.002130394,0.0014365404,0.00005224137,0.0022807368,0.00009479034,0.00009660388,0.0012569062,0.0019549772,0.9905223,0.00002390466],"about_ca_topic_score_codex":0.0005475403,"about_ca_topic_score_gemma":0.00075815764,"teacher_disagreement_score":0.001874628,"about_ca_system_score_codex":0.00050050666,"about_ca_system_score_gemma":0.0007315239,"threshold_uncertainty_score":0.006271243},"labels":[],"label_agreement":null},{"id":"W2042369630","doi":"10.4161/gmic.23567","title":"Perinatal antibiotic treatment affects murine microbiota, immune responses and allergic asthma","year":2013,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":283,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Immune system; Immunology; Hygiene hypothesis; Antibiotics; Gut flora; Asthma; Biology; Weaning; Flora (microbiology); Allergy; Microbiology; Bacteria","score_opus":0.020261059611410708,"score_gpt":0.30264310605085637,"score_spread":0.28238204643944564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042369630","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002223847,0.9987778,0.00011178932,0.00011024895,0.000088893714,0.0000029502994,0.00001649462,0.000006994646,0.00066236546],"genre_scores_gemma":[0.0009314974,0.99825317,0.00013344959,0.000100579644,0.00005484627,0.0000045899715,0.000024384559,0.0000015924082,0.0004957273],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99986005,0.000019945925,0.000022403017,0.000026740632,0.00005616772,0.000014672374],"domain_scores_gemma":[0.9997632,0.00009135471,0.00004522835,0.000007830046,0.000060241207,0.00003222524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042835358,0.0007719624,0.0010338544,0.001309196,0.00019667504,0.000591716,0.00067010935,0.0009215579,0.0017058565],"category_scores_gemma":[0.0004687948,0.000245066,0.00029841615,0.0010381507,0.00042740424,0.00056896213,0.00053637504,0.001175397,0.001287958],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012415761,0.00006913015,0.0003257202,0.009972367,0.00006382303,0.0002274349,0.000033349803,0.00020564516,0.00476355,0.0015602919,0.012916727,0.96973777],"study_design_scores_gemma":[0.000029556353,0.00022625504,0.003542819,0.002963797,0.00019653987,0.0019609092,0.00006294103,0.00010913239,0.0031406488,0.0014820172,0.9862564,0.00002907122],"about_ca_topic_score_codex":0.0013251872,"about_ca_topic_score_gemma":0.002477998,"teacher_disagreement_score":0.0017058565,"about_ca_system_score_codex":0.00054392853,"about_ca_system_score_gemma":0.0007288463,"threshold_uncertainty_score":0.005706668},"labels":[],"label_agreement":null},{"id":"W2046504989","doi":"10.4161/gmic.23361","title":"Active modification of host inflammation bySalmonella","year":2013,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Effector; Host (biology); Salmonella; Pathogenesis; Salmonella enterica; Immune system; Inflammation; Ubiquitin ligase; Ubiquitin; Pathogen; Microbiology; Immunology; Host response; Cell biology; Bacteria; Genetics; Gene","score_opus":0.05735763955387,"score_gpt":0.28943991106760375,"score_spread":0.23208227151373376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046504989","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014045967,0.9985935,0.0000895053,0.0002463372,0.00017418251,0.0000025562401,0.000020971755,0.000006626299,0.00072587817],"genre_scores_gemma":[0.0006641233,0.99850875,0.00013567688,0.000088525914,0.00012163552,0.000002845335,0.000027568509,0.0000011493793,0.000449731],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998833,0.000018939798,0.000017777706,0.000020017047,0.000044495137,0.00001553087],"domain_scores_gemma":[0.9997662,0.00007168074,0.000046191224,0.000007111894,0.0000755571,0.000033191885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038609284,0.0007915685,0.0010932904,0.0022641928,0.00022219062,0.0008505175,0.0005175077,0.00090177153,0.0038749217],"category_scores_gemma":[0.00048178656,0.00017544218,0.00038243225,0.001997917,0.00032379405,0.0009635038,0.0007292284,0.00091962155,0.0024423746],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006275217,0.000045524313,0.00027311334,0.016089218,0.00006913175,0.00018016637,0.000039536066,0.00016059088,0.003029547,0.0017150649,0.019105034,0.9592303],"study_design_scores_gemma":[0.0000096985905,0.000105541636,0.001479712,0.0031251146,0.00009004042,0.0013546252,0.00008534593,0.00004993342,0.00093829015,0.0009153545,0.9918277,0.000018657012],"about_ca_topic_score_codex":0.0010325693,"about_ca_topic_score_gemma":0.001894191,"teacher_disagreement_score":0.0038749217,"about_ca_system_score_codex":0.00047311076,"about_ca_system_score_gemma":0.0009390335,"threshold_uncertainty_score":0.012962937},"labels":[],"label_agreement":null},{"id":"W2048698900","doi":"10.4161/gmic.1.2.11142","title":"Adherent-invasiveEscherichia colitarget the epithelial barrier","year":2010,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children; University of Alberta Hospital; University of Alberta","funders":"","keywords":"Biology; Pathogenesis; Inflammatory bowel disease; Immunology; Intestinal epithelium; Immune system; Microbiology; Inflammation; Disease; Escherichia coli; Epithelium; Intestinal mucosa; Ulcerative colitis; Pathology; Medicine; Genetics; Gene","score_opus":0.006051947196022526,"score_gpt":0.23177689583969913,"score_spread":0.2257249486436766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048698900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.82919604,0.10637982,0.029493235,0.004236262,0.00065642636,0.00015359053,0.0003642296,0.0003633536,0.029157095],"genre_scores_gemma":[0.92942643,0.044886358,0.014263141,0.0010250248,0.00021756896,0.00004386649,0.00025121038,0.000031767588,0.009854678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986696,0.00004264153,0.0000082291945,0.000014174663,0.000039890354,0.000028072365],"domain_scores_gemma":[0.99991536,0.000016531903,0.000023498813,0.000007164697,0.000018729706,0.000018775561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016175296,0.00032815695,0.0002416566,0.00022481279,0.0001786058,0.00058538176,0.00019632131,0.00048659366,0.001318995],"category_scores_gemma":[0.00014588385,0.00008617559,0.00018949738,0.00017419601,0.00027059086,0.0003467762,0.00027228362,0.00048564834,0.0005668111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011510348,0.000050510836,0.00088356744,0.00029324502,0.00001552185,0.00032786586,0.000027279286,0.00011629946,0.978873,0.0013430555,0.0004417892,0.017512782],"study_design_scores_gemma":[0.00002540595,0.0008252401,0.01724747,0.00010716297,0.000056797893,0.0021212024,0.00025203612,0.0011063868,0.9453836,0.0016715105,0.031183787,0.00001945662],"about_ca_topic_score_codex":0.0004200481,"about_ca_topic_score_gemma":0.0006346448,"teacher_disagreement_score":0.001318995,"about_ca_system_score_codex":0.00017156255,"about_ca_system_score_gemma":0.0001829799,"threshold_uncertainty_score":0.0044124722},"labels":[],"label_agreement":null},{"id":"W2053847114","doi":"10.4161/gmic.19246","title":"Prebiotic fiber modulation of the gut microbiota improves risk factors for obesity and the metabolic syndrome","year":2012,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":205,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Royal University; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Prebiotic; Gut flora; Biology; Firmicutes; Dysbiosis; Lactobacillus; Obesity; Probiotic; Metabolic syndrome; Insulin resistance; Resistant starch; Food science; Endocrinology; Immunology; Bacteria; Genetics; Fermentation","score_opus":0.018472029181954158,"score_gpt":0.26986381632991885,"score_spread":0.2513917871479647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053847114","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00033190084,0.99890316,0.00009954262,0.0001864341,0.000091431204,0.0000026151486,0.000009768094,0.000004507119,0.0003706974],"genre_scores_gemma":[0.0015644252,0.9974663,0.00022534802,0.00010088294,0.00007691916,0.0000050998447,0.000018261697,0.000001407929,0.0005413567],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99990165,0.00001737048,0.000013576584,0.000020023333,0.00003659258,0.000010734064],"domain_scores_gemma":[0.9998443,0.000054979657,0.000028280972,0.0000056002655,0.000047054447,0.000019782843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003817933,0.00077567296,0.0010477249,0.0010596617,0.00015538605,0.00047512638,0.0005751413,0.00082202826,0.0026382543],"category_scores_gemma":[0.00036873744,0.00017232458,0.00031955406,0.00091865787,0.000348756,0.0005617935,0.00038754373,0.0011739514,0.0012324526],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019308025,0.00011556363,0.00025528873,0.0069356007,0.00009974861,0.00013712465,0.000021419446,0.00019485943,0.0040060994,0.0010710541,0.008783585,0.97818667],"study_design_scores_gemma":[0.00011045431,0.0006438256,0.0076398314,0.005027706,0.00036636324,0.003449593,0.00009748339,0.00027914057,0.0043539335,0.0031764898,0.9748072,0.000047822406],"about_ca_topic_score_codex":0.00068287604,"about_ca_topic_score_gemma":0.0012735866,"teacher_disagreement_score":0.0026382543,"about_ca_system_score_codex":0.00030756913,"about_ca_system_score_gemma":0.000498177,"threshold_uncertainty_score":0.008825839},"labels":[],"label_agreement":null},{"id":"W2055045309","doi":"10.4161/19490976.2014.969977","title":"Re-thinking the functions of IgA+plasma cells","year":2014,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Toronto","funders":"","keywords":"Biology; Immunoglobulin A; Immunology; Immune system; Antibody; Population; Tumor necrosis factor alpha; Homeostasis; Innate immune system; Context (archaeology); Inflammation; Immunity; Secretion; Effector; Antigen; Cell biology; Immunoglobulin G; Endocrinology; Medicine","score_opus":0.022056449711808424,"score_gpt":0.26276047458012913,"score_spread":0.2407040248683207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055045309","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002497973,0.9975695,0.00024044228,0.0005497641,0.00035216054,0.0000026781686,0.000013472696,0.000008187907,0.0010138509],"genre_scores_gemma":[0.0014649169,0.9965256,0.00027822723,0.00030483588,0.0003268921,0.0000050784347,0.000024994282,0.0000020588905,0.0010674016],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998635,0.000023442155,0.00001825487,0.000025446629,0.00005029729,0.000019056737],"domain_scores_gemma":[0.99981934,0.000058510905,0.000019822404,0.0000076217866,0.00006790899,0.000026810121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004614211,0.00065267156,0.00073939323,0.0012440266,0.00024674306,0.00095728657,0.0006553915,0.00095220807,0.0017558442],"category_scores_gemma":[0.0004969875,0.00017740631,0.00032153676,0.0011475141,0.00059709314,0.0016151576,0.0005949595,0.0016698589,0.0013348318],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011775085,0.00004600283,0.00041824885,0.010639831,0.00006209646,0.00026809415,0.00010644793,0.00030566723,0.0073372694,0.008608903,0.030534457,0.9415552],"study_design_scores_gemma":[0.00000691416,0.00007495533,0.0011738256,0.0013935236,0.0000424498,0.0011591763,0.000083322266,0.000069291214,0.0011711498,0.0029255815,0.9918868,0.00001306076],"about_ca_topic_score_codex":0.00061065436,"about_ca_topic_score_gemma":0.0007783585,"teacher_disagreement_score":0.0017558442,"about_ca_system_score_codex":0.0005787293,"about_ca_system_score_gemma":0.00084507343,"threshold_uncertainty_score":0.005873859},"labels":[],"label_agreement":null},{"id":"W2056191171","doi":"10.4161/gmic.29810","title":"Emerging science of the human microbiome","year":2014,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Micropharma (Canada)","funders":"","keywords":"Microbiome; Biology; Human microbiome; Computational biology; Disease; Human Microbiome Project; Gut microbiome; Metagenomics; Human health; Gene; Bioinformatics; Genetics; Medicine","score_opus":0.01913978316586831,"score_gpt":0.343985960177354,"score_spread":0.3248461770114857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056191171","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007362214,0.9944372,0.0002384798,0.0022322382,0.0011783296,0.0000040363984,0.000014003274,0.0000102138065,0.001811927],"genre_scores_gemma":[0.0011363521,0.9946443,0.0003437488,0.0011658882,0.0012863226,0.000007911996,0.000022242752,0.0000033549427,0.0013898388],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995499,0.00013953693,0.00003666877,0.00006422535,0.00016900292,0.00004065054],"domain_scores_gemma":[0.9991623,0.0004222935,0.00006978389,0.000038863112,0.00019231143,0.0001143746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010765375,0.0008489734,0.0011065054,0.0015519009,0.00046115616,0.0017814933,0.0008424087,0.0025359397,0.007283852],"category_scores_gemma":[0.002018568,0.00022183248,0.0004909133,0.0015997231,0.0014099134,0.0029105202,0.0017235539,0.0029783314,0.0029468646],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036557853,0.000022752363,0.000300804,0.006477708,0.000076002674,0.00016958902,0.00014198424,0.00012667505,0.0007538803,0.016312188,0.076191224,0.8993906],"study_design_scores_gemma":[0.00000457248,0.000021088765,0.00060385565,0.002247862,0.000022112474,0.0006474312,0.00009063563,0.00003750966,0.000109189896,0.0060570533,0.9901472,0.000011504164],"about_ca_topic_score_codex":0.0013143496,"about_ca_topic_score_gemma":0.0015602598,"teacher_disagreement_score":0.007283852,"about_ca_system_score_codex":0.001017453,"about_ca_system_score_gemma":0.0018249995,"threshold_uncertainty_score":0.024366975},"labels":[],"label_agreement":null},{"id":"W2061664992","doi":"10.4161/gmic.24373","title":"Nod1 and Nod2 signaling does not alter the composition of intestinal bacterial communities at homeostasis","year":2013,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; NOD2; Dysbiosis; NOD1; Cecum; Nod; Ileum; Immune system; Immunology; Innate immune system; Microbiome; Gut flora; Microbiology; Pattern recognition receptor; Genetics; Endocrinology; Gene; Ecology","score_opus":0.011363023192944821,"score_gpt":0.23306369185892103,"score_spread":0.2217006686659762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061664992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967663,0.0009659561,0.0009967015,0.00008135383,0.000027162241,0.000013488887,0.00040414525,0.000031549494,0.000713292],"genre_scores_gemma":[0.99647,0.00037695063,0.00088030077,0.00011363525,0.000009159511,0.000054385382,0.0006201387,0.000016962545,0.0014584538],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994986,0.00008538163,0.000047353646,0.00017007862,0.00009766803,0.00010095495],"domain_scores_gemma":[0.99959844,0.00003224883,0.00013440524,0.000042343658,0.000030423435,0.0001622047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027491193,0.00038642465,0.00042224597,0.000258704,0.00017363038,0.00042101849,0.00017419801,0.00045840707,0.0019291047],"category_scores_gemma":[0.00029478423,0.00020758878,0.00024011414,0.00013850849,0.0003819808,0.00036281932,0.0003465001,0.0006870368,0.00036461075],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008117256,0.00006312312,0.0023456477,0.000051399602,0.0000106491225,0.000090557856,0.000019388102,0.000029136956,0.9953381,0.000041042305,0.000028495268,0.0011708284],"study_design_scores_gemma":[0.0001583386,0.0041688033,0.1317134,0.000060418533,0.00008974733,0.0027143261,0.00033673501,0.001049163,0.85471725,0.0002476196,0.0047207004,0.000023526743],"about_ca_topic_score_codex":0.00017541327,"about_ca_topic_score_gemma":0.00034297386,"teacher_disagreement_score":0.0019291047,"about_ca_system_score_codex":0.00019102852,"about_ca_system_score_gemma":0.00017844289,"threshold_uncertainty_score":0.006453514},"labels":[],"label_agreement":null},{"id":"W2064086929","doi":"10.4161/gmic.20870","title":"Tip of the iceberg?","year":2012,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Inflammatory bowel disease; Biology; Disease; Antibiotics; Population; Iceberg; Inflammatory Bowel Diseases; Crohn's disease; Intensive care medicine; Immunology; Internal medicine; Medicine; Microbiology; Environmental health","score_opus":0.025435210304122144,"score_gpt":0.2918231528228656,"score_spread":0.2663879425187434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064086929","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009961321,0.03444742,0.00044428016,0.9438475,0.012471861,0.00000705388,0.0001173881,0.00004638189,0.0076219654],"genre_scores_gemma":[0.057526544,0.11892322,0.0024139858,0.7593036,0.044873793,0.00010588848,0.00050065445,0.00027697562,0.016075315],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99496007,0.0022870332,0.0002837728,0.00055400387,0.0010562923,0.0008587726],"domain_scores_gemma":[0.97796655,0.009048852,0.0011148258,0.00096709694,0.004431898,0.0064707077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012345241,0.00067172,0.001637266,0.0013527103,0.0037042387,0.009003237,0.0022554756,0.008346723,0.044996124],"category_scores_gemma":[0.044617653,0.0003702985,0.00077147887,0.001443888,0.008750023,0.020296298,0.005406785,0.017636597,0.011547712],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018461779,0.0000916299,0.001639128,0.0004785964,0.000056568922,0.0003256065,0.00070773833,0.00010596239,0.000102451064,0.032062046,0.8361973,0.12804836],"study_design_scores_gemma":[0.00007619678,0.00010656927,0.0021630863,0.0033538404,0.000051104314,0.00080111704,0.006682301,0.00016251748,0.00012471346,0.11696158,0.8694598,0.00005725246],"about_ca_topic_score_codex":0.004316528,"about_ca_topic_score_gemma":0.009856452,"teacher_disagreement_score":0.044996124,"about_ca_system_score_codex":0.0030888284,"about_ca_system_score_gemma":0.009529841,"threshold_uncertainty_score":0.150527},"labels":[],"label_agreement":null},{"id":"W2064272233","doi":"10.4161/gmic.27251","title":"Air pollution effects on the gut microbiota","year":2013,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Air Quality and Health Impacts","field":"Environmental Science","cited_by":349,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Bible College; University of Calgary; University of Alberta","funders":"","keywords":"Biology; Inflammatory bowel disease; Genome-wide association study; Gut flora; Microbiome; Disease; Gastrointestinal tract; Pollutant; Environmental health; Immunology; Bioinformatics; Genetics; Ecology; Single-nucleotide polymorphism; Medicine; Internal medicine; Genotype","score_opus":0.014463878431649138,"score_gpt":0.24344783342845552,"score_spread":0.22898395499680638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064272233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96660244,0.024474649,0.0009615776,0.0016948719,0.00019660099,0.000017638491,0.00035337897,0.000036164714,0.005662681],"genre_scores_gemma":[0.986317,0.01047597,0.0008480579,0.00038140392,0.000107845255,0.000010132007,0.00014101589,0.00000908572,0.0017095524],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996786,0.00013338524,0.000012159716,0.00005075515,0.00006589561,0.000059166432],"domain_scores_gemma":[0.9998405,0.000032718643,0.000039152368,0.00001144454,0.000037372345,0.000038840124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022479866,0.00022621317,0.00019268222,0.00046941283,0.00044883878,0.00075913145,0.00009811653,0.00057423447,0.0020239006],"category_scores_gemma":[0.0004179665,0.00012454465,0.0002895686,0.00027343034,0.0003136284,0.0002395372,0.0006011517,0.00034484183,0.00027367155],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025325236,0.0004227137,0.25259924,0.000929905,0.00054373516,0.0011333202,0.00095925404,0.0011295448,0.5727791,0.0023500393,0.002834037,0.16178662],"study_design_scores_gemma":[0.000046449222,0.001278539,0.946736,0.00015573557,0.00021081873,0.0007625471,0.0011927203,0.00084402086,0.027182546,0.0032372063,0.018327547,0.000025979032],"about_ca_topic_score_codex":0.0027542755,"about_ca_topic_score_gemma":0.003653931,"teacher_disagreement_score":0.0027542755,"about_ca_system_score_codex":0.00028879885,"about_ca_system_score_gemma":0.00027712324,"threshold_uncertainty_score":0.006770611},"labels":[],"label_agreement":null},{"id":"W2064291970","doi":"10.4161/gmic.2.3.16106","title":"Probiotics and prebiotics to combat enteric infections and HIV in the developing world: a consensus report","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"National Institute for Health and Care Research","keywords":"Probiotic; Diarrhea; Intensive care medicine; Clinical trial; Bacterial vaginosis; Immunology; Prebiotic; Medicine; Biology; Internal medicine; Microbiology","score_opus":0.034769034190786786,"score_gpt":0.22992209669208977,"score_spread":0.195153062501303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064291970","genre_codex":"review","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005871191,0.8051373,0.0035032197,0.16260573,0.021229943,0.00047909893,0.00036807117,0.00010590172,0.0059835766],"genre_scores_gemma":[0.003955971,0.9231655,0.014910596,0.04204975,0.009028567,0.0005823375,0.0010701274,0.00004489967,0.0051922062],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9905577,0.0025422277,0.002679817,0.0006285091,0.0030582938,0.0005334993],"domain_scores_gemma":[0.98125535,0.0056514237,0.0022850719,0.00035377173,0.008540375,0.0019139725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018541304,0.00159151,0.0029289897,0.0041302657,0.0010969813,0.004060371,0.0045860945,0.008912061,0.003796374],"category_scores_gemma":[0.015460075,0.0009611415,0.0033424082,0.0033810814,0.001416348,0.004817551,0.0038426989,0.008719871,0.0031590806],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018446884,0.0003552144,0.0009829105,0.02770612,0.00022152773,0.00059459225,0.0007988483,0.0006483007,0.0016863635,0.005471517,0.41279402,0.54855615],"study_design_scores_gemma":[0.000069311565,0.00018517788,0.0015427055,0.035157207,0.0003597929,0.0008291835,0.0006841746,0.00026066098,0.00044034704,0.0043033636,0.95610946,0.00005861358],"about_ca_topic_score_codex":0.0042401515,"about_ca_topic_score_gemma":0.0060647177,"teacher_disagreement_score":0.018541304,"about_ca_system_score_codex":0.002457612,"about_ca_system_score_gemma":0.01458852,"threshold_uncertainty_score":0.09805697},"labels":[],"label_agreement":null},{"id":"W2070383154","doi":"10.4161/gmic.19488","title":"How a sugary bug gets through the day","year":2012,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Alberta","funders":"Alberta Innovates; Canada Research Chairs; Burroughs Wellcome Fund","keywords":"Biology","score_opus":0.10779534812413737,"score_gpt":0.292811515912914,"score_spread":0.1850161677887766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070383154","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002211166,0.9755622,0.00055230357,0.009162691,0.0027418197,0.000018222516,0.00011544752,0.00009327744,0.00954276],"genre_scores_gemma":[0.0080005145,0.9715576,0.00081662467,0.0047092065,0.00074777275,0.000014358284,0.0001546993,0.000019729277,0.013979477],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998529,0.00003481709,0.00001312988,0.000025778843,0.000049825114,0.000023528604],"domain_scores_gemma":[0.999871,0.00002798627,0.000020402644,0.000005117617,0.000044294375,0.00003119871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031613145,0.00060188957,0.00072829647,0.00083873427,0.00054011145,0.0014799281,0.0005499402,0.0015850231,0.0065410375],"category_scores_gemma":[0.0006450093,0.00014087731,0.00029743795,0.00065379683,0.00056972704,0.001622322,0.0007655975,0.001468856,0.0034226312],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110117544,0.00007565541,0.00069333566,0.006974939,0.000067633635,0.00048776605,0.00046156964,0.00010289419,0.0035764633,0.0038886839,0.11817667,0.8653842],"study_design_scores_gemma":[0.000004977014,0.00008128574,0.0013812586,0.0016982676,0.000028524264,0.0013304632,0.00046157755,0.000022178478,0.000492464,0.0012240448,0.9932619,0.000013217232],"about_ca_topic_score_codex":0.0026341947,"about_ca_topic_score_gemma":0.0041757254,"teacher_disagreement_score":0.0065410375,"about_ca_system_score_codex":0.0004755775,"about_ca_system_score_gemma":0.0009651824,"threshold_uncertainty_score":0.021881998},"labels":[],"label_agreement":null},{"id":"W2075198801","doi":"10.4161/gmic.1.4.12707","title":"Guide to designing, conducting, publishing, and communicating results of clinical studies involving probiotic applications in human participants","year":2010,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"National Center for Research Resources; Indian Council of Medical Research","keywords":"Clinical trial; Clinical study design; Psychological intervention; Population; Disease; Publishing; Probiotic; Medicine; Biology; Bioinformatics; Environmental health; Pathology; Nursing","score_opus":0.16193970844439276,"score_gpt":0.45230850240767106,"score_spread":0.2903687939632783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075198801","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0023406367,0.016030025,0.58577204,0.074607514,0.016534492,0.13325384,0.035851285,0.027348725,0.1082614],"genre_scores_gemma":[0.0032838031,0.0111467,0.8161932,0.014277439,0.0021370824,0.10863982,0.0045043523,0.0025418035,0.037275825],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.88627166,0.074776046,0.0238327,0.0021723397,0.011733343,0.0012138897],"domain_scores_gemma":[0.5074475,0.35853446,0.019824002,0.04008346,0.06782467,0.006285935],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.11834807,0.003425804,0.0051152166,0.009452259,0.0025542548,0.0066090315,0.0071480256,0.010824865,0.10004934],"category_scores_gemma":[0.24134734,0.005233159,0.0036762953,0.010202142,0.005698008,0.0055469438,0.004614629,0.0121516,0.11978885],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011513713,0.00085337856,0.00048026652,0.014610997,0.0002155173,0.0008309994,0.0022461305,0.00092250266,0.0032190492,0.010646946,0.6639183,0.30090457],"study_design_scores_gemma":[0.0007923484,0.0005515086,0.0012419978,0.0076472224,0.0001352737,0.00075267203,0.0006840183,0.0010154075,0.0014424564,0.015334746,0.9702444,0.00015799073],"about_ca_topic_score_codex":0.0034396008,"about_ca_topic_score_gemma":0.007974818,"teacher_disagreement_score":0.88165194,"about_ca_system_score_codex":0.002869982,"about_ca_system_score_gemma":0.024267435,"threshold_uncertainty_score":0.6258919},"labels":[],"label_agreement":null},{"id":"W2079150934","doi":"10.4161/gmic.29417","title":"The microbiota-gut-brain axis in functional gastrointestinal disorders","year":2014,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Irritable bowel syndrome; Gut–brain axis; Gut flora; Functional gastrointestinal disorder; Biology; Pathophysiology; Bioinformatics; Medicine; Internal medicine; Immunology","score_opus":0.02577834209522212,"score_gpt":0.29560016144554785,"score_spread":0.26982181935032573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079150934","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015246774,0.9988292,0.00007716851,0.00021309996,0.000108981134,0.000004174623,0.000015538766,0.000004177347,0.00059519673],"genre_scores_gemma":[0.0013164938,0.9979729,0.00016614115,0.00011781161,0.00012618036,0.0000053969907,0.000020011847,8.71966e-7,0.00027417816],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997862,0.000054801727,0.000045344834,0.000033132903,0.000060238453,0.000020377112],"domain_scores_gemma":[0.9996321,0.00020898672,0.00005646558,0.000007432598,0.000070592265,0.000024408791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044927088,0.00078472914,0.0011422449,0.0023982225,0.00036823965,0.0012567071,0.0006081675,0.0012142401,0.004490226],"category_scores_gemma":[0.0010654031,0.00020636522,0.000660676,0.0023001442,0.0004349774,0.0011960304,0.0008595195,0.00116542,0.0012555065],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009662129,0.00007046155,0.00084082125,0.042370282,0.00025132525,0.00058033876,0.0002286617,0.00021422454,0.0010112956,0.0030064841,0.01823924,0.9330902],"study_design_scores_gemma":[0.00003326142,0.00020870748,0.0070428774,0.032118004,0.00076759903,0.008726968,0.0004989266,0.00015982895,0.0006475191,0.0041206423,0.9456225,0.000053094405],"about_ca_topic_score_codex":0.0014313434,"about_ca_topic_score_gemma":0.0025345953,"teacher_disagreement_score":0.004490226,"about_ca_system_score_codex":0.0005344136,"about_ca_system_score_gemma":0.0016272468,"threshold_uncertainty_score":0.015021324},"labels":[],"label_agreement":null},{"id":"W2090498907","doi":"10.4161/gmic.23283","title":"New insights into probiotic mechanisms","year":2013,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Probiotic; Biology; Disease; Variety (cybernetics); Gut flora; Host (biology); Selection (genetic algorithm); Computational biology; Immunology; Bacteria; Ecology; Genetics; Medicine; Computer science","score_opus":0.019888462138973082,"score_gpt":0.2946531417242742,"score_spread":0.2747646795853011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090498907","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00023294346,0.9965783,0.00037032383,0.0007886285,0.00032248354,0.000002664515,0.000011244237,0.000007584708,0.0016859506],"genre_scores_gemma":[0.0014071361,0.99692446,0.00034301792,0.00027915632,0.00028425982,0.0000048265124,0.000015678248,0.000002002306,0.0007393612],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997278,0.000057778954,0.000029856188,0.000050268405,0.00010697838,0.000027271095],"domain_scores_gemma":[0.9997286,0.00012499119,0.000023630959,0.000013613126,0.00007789503,0.00003121093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007808555,0.00088882534,0.0014122933,0.002451886,0.00035392668,0.0016421466,0.0008679628,0.0014297174,0.004026626],"category_scores_gemma":[0.0007195556,0.00027842197,0.0004696764,0.001727494,0.0011744882,0.0025086245,0.0012212669,0.0027199064,0.0017810134],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001169887,0.00009646806,0.00033424937,0.0118618095,0.00007654532,0.0005631493,0.00026061136,0.00034012602,0.00913249,0.030258726,0.015143268,0.9318157],"study_design_scores_gemma":[0.00001273988,0.00007365276,0.0007061829,0.0027123205,0.00004122426,0.0012222582,0.00016536601,0.00012897843,0.0011234276,0.010693911,0.9831028,0.000017186827],"about_ca_topic_score_codex":0.0006879377,"about_ca_topic_score_gemma":0.00088469486,"teacher_disagreement_score":0.004026626,"about_ca_system_score_codex":0.0007526263,"about_ca_system_score_gemma":0.0011024526,"threshold_uncertainty_score":0.013470411},"labels":[],"label_agreement":null},{"id":"W2091209445","doi":"10.4161/gmic.29100","title":"Polarizing the T helper 17 response inCitrobacter rodentiuminfection via expression of resistin-like molecule α","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Aplastic Anemia and Myelodysplasia Association of Canada","keywords":"Citrobacter rodentium; Biology; Citrobacter; Effector; Microbiology; Immunology; Cytokine; Inflammation; Macrophage; Intestinal mucosa; Pathogen; Immunity; Immune system; Escherichia coli; Enterobacteriaceae; Medicine; Gene; In vitro","score_opus":0.005737929186980082,"score_gpt":0.21192660248971834,"score_spread":0.20618867330273827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091209445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493486,0.0010516685,0.001959408,0.00022625084,0.00007202147,0.00005883902,0.0001892709,0.00010222208,0.0014055384],"genre_scores_gemma":[0.9930091,0.0008078446,0.0039809435,0.00013871602,0.00002917448,0.00007277184,0.00021322747,0.00003587629,0.0017124275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997106,0.00008123434,0.000033876953,0.000053055195,0.00003582476,0.000085393556],"domain_scores_gemma":[0.999795,0.000025682144,0.00008398635,0.000028144086,0.000015133215,0.00005201659],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039598587,0.0006792348,0.00024355194,0.00034515053,0.00015585822,0.00030130355,0.00022237988,0.0004411024,0.0011926594],"category_scores_gemma":[0.00018326801,0.0002328555,0.0002742564,0.00010545954,0.00043506557,0.000256797,0.00019908191,0.0011484392,0.00036727887],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032877532,0.00006230227,0.00022836956,0.000042349722,0.0000017875902,0.00010644182,0.000020062827,0.00003160398,0.9981488,0.000067906374,0.00003503023,0.00092664093],"study_design_scores_gemma":[0.00008453995,0.0016272293,0.004114345,0.000020574753,0.000016864089,0.0010930484,0.00010121166,0.00043117427,0.9898996,0.00008151315,0.002521913,0.000007992628],"about_ca_topic_score_codex":0.0001948657,"about_ca_topic_score_gemma":0.00031908188,"teacher_disagreement_score":0.0011926594,"about_ca_system_score_codex":0.0002191441,"about_ca_system_score_gemma":0.00014984397,"threshold_uncertainty_score":0.0039898157},"labels":[],"label_agreement":null},{"id":"W2095427064","doi":"10.4161/19490976.2014.969635","title":"Gut microbes and adverse food reactions: Focus on gluten related disorders","year":2014,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Celiac Disease Research and Management","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Immune system; Immunology; Gluten; Pathogenesis; Disease; Population; Innate immune system; Antigen; Acquired immune system; Gastrointestinal tract; Microbiology; Medicine; Environmental health","score_opus":0.0199594416318857,"score_gpt":0.31444466066339155,"score_spread":0.2944852190315059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095427064","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000825135,0.9987698,0.00004190555,0.00026189047,0.00021137724,0.0000025341471,0.000007742084,0.0000032672742,0.0006189826],"genre_scores_gemma":[0.00047627426,0.99857473,0.00008263707,0.00020568121,0.00026558424,0.0000026070384,0.000014513683,8.4740157e-7,0.00037705476],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997776,0.000048659505,0.00004381998,0.00003656467,0.00007249381,0.000020792892],"domain_scores_gemma":[0.9995247,0.00024706707,0.000072405484,0.000010632574,0.0001081551,0.00003697712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004414471,0.000846688,0.0012948766,0.0026827008,0.00028413843,0.000947188,0.00058810605,0.0010529732,0.0053571416],"category_scores_gemma":[0.0008405894,0.00021189707,0.00061427784,0.002871576,0.00045545807,0.0014691408,0.00080180843,0.0015031212,0.0016040922],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000859303,0.0000819898,0.00039746088,0.02678404,0.00012892115,0.00032543635,0.00010440483,0.00017419725,0.0009813058,0.0023241977,0.03525179,0.93336016],"study_design_scores_gemma":[0.000023695562,0.000117714226,0.0028383702,0.014014837,0.00025198082,0.0041546496,0.00015540204,0.0000793209,0.0002810355,0.0019329974,0.97612554,0.000024577952],"about_ca_topic_score_codex":0.0011250585,"about_ca_topic_score_gemma":0.0020653394,"teacher_disagreement_score":0.0053571416,"about_ca_system_score_codex":0.0005211597,"about_ca_system_score_gemma":0.001030029,"threshold_uncertainty_score":0.017921448},"labels":[],"label_agreement":null},{"id":"W2112914354","doi":"10.4161/gmic.2.2.15787","title":"Effect of 25 weeks probiotic supplementation on immune function of HIV patients","year":2011,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"Danone Institute of Canada; Advanced Foods and Materials Network","keywords":"Placebo; Probiotic; Lactobacillus rhamnosus; Immune system; Internal medicine; Lactobacillus reuteri; Diarrhea; Adverse effect; Medicine; Gastroenterology; Immunology; Randomized controlled trial; Lactobacillus; Incidence (geometry); Biology","score_opus":0.010261795549585548,"score_gpt":0.1990506484795592,"score_spread":0.18878885292997366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112914354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950448,0.0037659071,0.00007250027,0.0001520105,0.00009267161,0.00035395613,0.00009806293,0.000016513026,0.00040358675],"genre_scores_gemma":[0.99587893,0.0017231883,0.000481508,0.00027950414,0.00009700151,0.000627291,0.0001734607,0.000002995409,0.00073612214],"study_design_codex":"randomized_trial","study_design_gemma":"nonrandomized_trial","domain_scores_codex":[0.9995956,0.0002026944,0.00004062712,0.00005330016,0.000036825317,0.00007103622],"domain_scores_gemma":[0.9990301,0.0003082742,0.00022756786,0.000043274358,0.000035948102,0.0003548424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010715965,0.00052050635,0.0012059681,0.00024941843,0.00038463273,0.0004822437,0.00043550474,0.000876572,0.0036199202],"category_scores_gemma":[0.0016512218,0.00033438313,0.0007582844,0.00017867002,0.0003801211,0.00025467866,0.0003430656,0.00096225564,0.00023144444],"study_design_candidate":"nonrandomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.85423446,0.024222344,0.011577449,0.0011392571,0.0011079961,0.00020534957,0.00018572393,0.00037307647,0.00747718,0.000057583602,0.0005779614,0.09884159],"study_design_scores_gemma":[0.1569758,0.79533273,0.043097917,0.00021013395,0.0007692611,0.000120740115,0.000092391296,0.00022996355,0.0018392744,0.000075755364,0.0012285761,0.000027536988],"about_ca_topic_score_codex":0.00056996575,"about_ca_topic_score_gemma":0.0009892173,"teacher_disagreement_score":0.0036199202,"about_ca_system_score_codex":0.0002961279,"about_ca_system_score_gemma":0.00055313966,"threshold_uncertainty_score":0.012109816},"labels":[],"label_agreement":null},{"id":"W2127813400","doi":"10.4161/gmic.27915","title":"Mechanistic insight into digoxin inactivation byEggerthella lentaaugments our understanding of its pharmacokinetics","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Digoxin; Biology; Drug; Drug metabolism; Biomarker; Gut flora; Computational biology; Pharmacology; Biochemistry; Medicine; Heart failure","score_opus":0.038740978498020474,"score_gpt":0.3098130033668941,"score_spread":0.2710720248688736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127813400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861081,0.0017174745,0.0053637773,0.00070488744,0.00002509823,0.000030630872,0.00032370506,0.000077533994,0.0056487024],"genre_scores_gemma":[0.9951875,0.0007946335,0.0021218264,0.0001430497,0.0000066073076,0.000008159963,0.0001561726,0.0000071599793,0.0015748215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999949,0.000008504469,0.0000033034064,0.000012983248,0.000011009148,0.000015252625],"domain_scores_gemma":[0.99996364,0.0000065474433,0.0000141807795,0.0000044207977,0.0000050975978,0.000006130427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010000267,0.00026633183,0.00014418204,0.00011357307,0.00015089093,0.00028255134,0.00012520349,0.00034985892,0.00088365277],"category_scores_gemma":[0.00006710396,0.000060183742,0.00019847014,0.00007504448,0.00022472706,0.00021623046,0.00021210304,0.00040966272,0.00017693771],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000070658396,0.000020291247,0.0008981525,0.00003287416,0.000003878429,0.0000718524,0.000012124561,0.00014233628,0.9959085,0.00047613506,0.000032678327,0.0023305034],"study_design_scores_gemma":[0.0000134834145,0.00049245765,0.016292086,0.000017640848,0.000023891116,0.00031556777,0.00010350982,0.0019427203,0.9749366,0.0007365143,0.0051158685,0.000009636686],"about_ca_topic_score_codex":0.0009057852,"about_ca_topic_score_gemma":0.001125444,"teacher_disagreement_score":0.0009057852,"about_ca_system_score_codex":0.00042403652,"about_ca_system_score_gemma":0.00018866699,"threshold_uncertainty_score":0.0030766726},"labels":[],"label_agreement":null},{"id":"W2168621640","doi":"10.1080/19490976.2015.1086056","title":"Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother's periconceptional diet","year":2015,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":202,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; University of Manitoba","keywords":"Pregnancy; Biology; Gut flora; Microbiome; Gestation; Feces; Physiology; Endocrinology; Internal medicine; Immunology; Microbiology; Genetics; Medicine","score_opus":0.018798468253047505,"score_gpt":0.25602710582190413,"score_spread":0.23722863756885662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168621640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99689144,0.0012818398,0.0007995283,0.00007103511,0.000011332139,0.000009187038,0.00022893112,0.000024222978,0.0006825993],"genre_scores_gemma":[0.995546,0.0014230288,0.0011850704,0.00009582565,0.0000115914045,0.00005001929,0.00028678187,0.0000185568,0.0013831133],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979585,0.00004761602,0.000011468743,0.000052441206,0.000048488346,0.00004415512],"domain_scores_gemma":[0.999711,0.000049928483,0.0001225252,0.000030981704,0.000023172559,0.000062427745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021815239,0.00021858276,0.0002573367,0.00025975713,0.00012891219,0.0003163404,0.00013613964,0.00020069814,0.0008065707],"category_scores_gemma":[0.0003668944,0.00020946487,0.00018321822,0.00013172431,0.00024885687,0.0001294774,0.00028179135,0.000531441,0.00017388801],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014824138,0.00005619701,0.018493982,0.000047379886,0.000024739671,0.00024395906,0.00013737389,0.000036580022,0.9708345,0.000078926394,0.000071155206,0.0084928265],"study_design_scores_gemma":[0.000029318655,0.0013989068,0.76900685,0.000044324297,0.00009998947,0.0011067736,0.00027459857,0.00044564094,0.22524132,0.0001825514,0.0021443022,0.00002550331],"about_ca_topic_score_codex":0.0006344734,"about_ca_topic_score_gemma":0.0010837261,"teacher_disagreement_score":0.0008065707,"about_ca_system_score_codex":0.00022975302,"about_ca_system_score_gemma":0.00022784596,"threshold_uncertainty_score":0.0026982427},"labels":[],"label_agreement":null},{"id":"W2197555561","doi":"10.4161/gmic.1.5.13295","title":"'Nodophagy'","year":2010,"lang":"hu","type":"article","venue":"Gut Microbes","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"ATG16L1; Autophagy; Biology; NOD2; Immune system; Cell biology; Major histocompatibility complex; Antigen presentation; Acquired immune system; Inflammasome; Innate immune system; Immunology; Inflammation; T cell; Genetics; Apoptosis","score_opus":0.00473480123018645,"score_gpt":0.2550487896583468,"score_spread":0.2503139884281604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2197555561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5411071,0.1672147,0.03823437,0.0045060897,0.0032034577,0.00045708907,0.0073526325,0.0024700435,0.23545451],"genre_scores_gemma":[0.853472,0.030611152,0.007968559,0.0021865356,0.0001731343,0.00025602555,0.0041336925,0.0000703086,0.10112864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997358,0.00003995597,0.000017570881,0.000060210205,0.000089919195,0.000056666617],"domain_scores_gemma":[0.99989605,0.000008724869,0.000024493058,0.000016078833,0.000022929167,0.00003177424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028083278,0.00041271545,0.0004559359,0.00033453712,0.00050713576,0.00087697513,0.00034750777,0.0005696439,0.0046662344],"category_scores_gemma":[0.0002069086,0.000106211,0.00030678342,0.00032943586,0.00043396998,0.0005092138,0.0011468028,0.0005213686,0.0019144891],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007602214,0.00009748788,0.0063848444,0.0019874398,0.00013189304,0.0025230886,0.00022786403,0.00023934047,0.7970158,0.020252228,0.019801697,0.1505782],"study_design_scores_gemma":[0.000079441124,0.00059891044,0.033798773,0.00036848712,0.0000804014,0.012849748,0.0002674542,0.00074559846,0.27182814,0.0064722495,0.6728497,0.00006110488],"about_ca_topic_score_codex":0.00042770547,"about_ca_topic_score_gemma":0.000668379,"teacher_disagreement_score":0.0046662344,"about_ca_system_score_codex":0.0005623871,"about_ca_system_score_gemma":0.00035884985,"threshold_uncertainty_score":0.015610099},"labels":[],"label_agreement":null},{"id":"W2201064350","doi":"10.1080/19490976.2015.1107696","title":"A dysbiotic subpopulation of alcohol-dependent subjects","year":2015,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Tryptophan and brain disorders","field":"Neuroscience","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Dysbiosis; Alcohol dependence; Intestinal permeability; Alcohol; Addiction; Biology; Psychological intervention; Psychiatry; Immunology; Microbiome; Bioinformatics; Psychology","score_opus":0.06568011584854871,"score_gpt":0.2840949044867092,"score_spread":0.2184147886381605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2201064350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983462,0.00046576455,0.000112488706,0.00007150367,0.0000081306225,0.000010794792,0.000120020166,0.0000042125516,0.0008609449],"genre_scores_gemma":[0.99857426,0.0003125919,0.00009264622,0.00006785101,0.000015895403,0.000010096008,0.00012752082,0.0000035487199,0.00079537794],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998815,0.000015626907,0.000013598702,0.000044698227,0.00002205627,0.000022573677],"domain_scores_gemma":[0.9998288,0.00001980972,0.000054182576,0.000018143091,0.000027439859,0.000051588242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010173047,0.00018888839,0.0003748512,0.0005799267,0.0004996943,0.0005034937,0.00019464437,0.00028778022,0.003460469],"category_scores_gemma":[0.0005923897,0.00011032992,0.00010706966,0.00038493556,0.00024940012,0.00034378044,0.0003646005,0.00026723635,0.00053782744],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009253022,0.0002029967,0.94633824,0.000092783244,0.00007712738,0.002957407,0.0017077214,0.000038201797,0.029966366,0.00024647758,0.0003807735,0.017066639],"study_design_scores_gemma":[0.000006493714,0.0003117704,0.9931491,0.000017426042,0.00004976817,0.0034326334,0.00096085994,0.00008368857,0.0006000543,0.0002932375,0.0010870539,0.000007807826],"about_ca_topic_score_codex":0.0022854132,"about_ca_topic_score_gemma":0.0025357613,"teacher_disagreement_score":0.003460469,"about_ca_system_score_codex":0.00013286115,"about_ca_system_score_gemma":0.0001515525,"threshold_uncertainty_score":0.011576414},"labels":[],"label_agreement":null},{"id":"W2273797486","doi":"10.1080/19490976.2016.1142036","title":"TriggeringAkkermansiawith dietary polyphenols: A new weapon to combat the metabolic syndrome?","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Université Laval","funders":"","keywords":"Akkermansia; Akkermansia muciniphila; Biology; Gut flora; Metabolic syndrome; Obesity; Polyphenol; Physiology; Bacteria; Immunology; Endocrinology; Lactobacillus; Biochemistry; Antioxidant","score_opus":0.010081398900838354,"score_gpt":0.23224467842912896,"score_spread":0.22216327952829062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2273797486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84354705,0.10825234,0.014870381,0.019084798,0.0020948618,0.00009462497,0.00032085576,0.00064185815,0.011093329],"genre_scores_gemma":[0.94878405,0.038952462,0.0045567867,0.0029613834,0.00081888505,0.00003811728,0.00012434073,0.00006376956,0.0037002082],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989676,0.00002577904,0.0000060176067,0.000018191346,0.000016222177,0.000037057333],"domain_scores_gemma":[0.999874,0.000018312323,0.0000504425,0.0000149116995,0.000012872538,0.000029518635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021311786,0.00039376624,0.000408096,0.00017232228,0.00018995671,0.000533773,0.00025651534,0.000681212,0.0016905972],"category_scores_gemma":[0.00020263289,0.0000948654,0.0003915751,0.00011591713,0.00048523585,0.00057704607,0.00041469705,0.00085964205,0.0003223612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017658886,0.00021480658,0.004815709,0.00108501,0.00013993737,0.0008633769,0.00008112196,0.00011333846,0.9362458,0.0025850127,0.002137176,0.04995277],"study_design_scores_gemma":[0.00030881472,0.006251224,0.06167247,0.00071416306,0.00066552975,0.0070219412,0.00079405046,0.0011267542,0.80731004,0.009581617,0.10445845,0.0000949746],"about_ca_topic_score_codex":0.00018575777,"about_ca_topic_score_gemma":0.00040859933,"teacher_disagreement_score":0.0016905972,"about_ca_system_score_codex":0.00019368704,"about_ca_system_score_gemma":0.0002092764,"threshold_uncertainty_score":0.0056555867},"labels":[],"label_agreement":null},{"id":"W2281965397","doi":"10.1080/19490976.2016.1144008","title":"A hypothetical model of host-pathogen interaction ofStreptococcus suisin the gastro-intestinal tract","year":2016,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus suis; Biology; Pathogen; Microbiology; Host (biology); Virulence; Serotype; Zoonosis; Human pathogen; Virology; Virulence factor; Bacteria; Genetics; Gene","score_opus":0.07489043429746459,"score_gpt":0.3633653647331591,"score_spread":0.2884749304356945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2281965397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0011134604,0.99184895,0.0011817752,0.0015551834,0.00043587107,0.000018165243,0.00006680992,0.000022941002,0.0037567662],"genre_scores_gemma":[0.007888683,0.9888882,0.0010484484,0.00047785472,0.00020362622,0.000022602919,0.00006396265,0.0000019467186,0.0014047107],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99986863,0.000037124275,0.000018494895,0.000026675505,0.000031826145,0.000017245222],"domain_scores_gemma":[0.999902,0.00004279944,0.000022207912,0.0000031990414,0.000019931338,0.000009846077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003421639,0.000627528,0.0007223905,0.0011499625,0.00029573851,0.000834852,0.0008373525,0.0013459687,0.0029564153],"category_scores_gemma":[0.0003437844,0.00017160329,0.0007800147,0.00072108366,0.00044170493,0.0014453889,0.00043212163,0.0009547731,0.0009142003],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031582647,0.00019369452,0.001489434,0.07906241,0.0005002906,0.0017720966,0.00045409452,0.0042084823,0.012442813,0.09867943,0.042984463,0.7578969],"study_design_scores_gemma":[0.000040942567,0.0005085474,0.0019835043,0.009439994,0.0006114815,0.005457453,0.00033358656,0.0018732607,0.0019543015,0.023354117,0.9543877,0.00005514339],"about_ca_topic_score_codex":0.0012322301,"about_ca_topic_score_gemma":0.0011515613,"teacher_disagreement_score":0.0029564153,"about_ca_system_score_codex":0.00057007384,"about_ca_system_score_gemma":0.000985027,"threshold_uncertainty_score":0.009890199},"labels":[],"label_agreement":null},{"id":"W2293839207","doi":"10.1080/19490976.2015.1127481","title":"Different Th17 immunity in gut, liver, and adipose tissues during obesity: the role of diet, genetics, and microbes","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Immune system; Immunity; Insulin resistance; Gut flora; Adipose tissue; Inflammation; Obesity; Dysbiosis; Immunology; Endocrinology; Internal medicine; Medicine","score_opus":0.0062198168925714165,"score_gpt":0.21941185507135663,"score_spread":0.2131920381787852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2293839207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967836,0.0017773374,0.0006977686,0.00008369202,0.000019396568,0.000006713267,0.00006513194,0.000012816559,0.0005536447],"genre_scores_gemma":[0.9971205,0.000991302,0.0009309121,0.00012931191,0.000018926521,0.000017797971,0.000069464186,0.000013767039,0.00070811284],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998282,0.000049763814,0.0000138936,0.000034627024,0.000031997897,0.000041528976],"domain_scores_gemma":[0.9998454,0.000018650686,0.000030568124,0.000021613274,0.000019205907,0.000064615095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033993137,0.00023625426,0.00025995783,0.000536678,0.00015610391,0.00036180296,0.00011450248,0.00025945096,0.0007437288],"category_scores_gemma":[0.00017790723,0.00016019502,0.00029385125,0.00019077133,0.00040123388,0.00032736512,0.00023059157,0.00064455334,0.00011820582],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011219978,0.00006649699,0.011551187,0.000061667815,0.000019746021,0.0001883335,0.00010471468,0.000056132965,0.9805397,0.00026431377,0.000038288374,0.005987382],"study_design_scores_gemma":[0.00019151208,0.0026345986,0.5522628,0.00008370326,0.00023311918,0.0028899694,0.0008824657,0.0010800489,0.434501,0.0015778997,0.003626009,0.000036873942],"about_ca_topic_score_codex":0.00015905031,"about_ca_topic_score_gemma":0.00037814802,"teacher_disagreement_score":0.0007437288,"about_ca_system_score_codex":0.00017078628,"about_ca_system_score_gemma":0.00013633618,"threshold_uncertainty_score":0.0024879575},"labels":[],"label_agreement":null},{"id":"W2333285099","doi":"10.4161/gmic.27712","title":"Vaccination againstClostridium difficileusing toxin fragments","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Clostridium difficile; Clostridium difficile toxin A; Vaccination; Clostridium difficile toxin B; Biology; Toxin; Microbiology; Virology; Glucosyltransferase; Diarrhea; Recombinant DNA; Antibody; Immunology; Antibiotics; Medicine; Gene","score_opus":0.022558183143432435,"score_gpt":0.2930235946467487,"score_spread":0.27046541150331627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2333285099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865312,0.0047743735,0.0052207327,0.0003670931,0.00009656008,0.00006371765,0.00013374267,0.00011471988,0.002697885],"genre_scores_gemma":[0.99175525,0.0033187526,0.0030479631,0.00020547093,0.00005451759,0.000023526658,0.0002918471,0.000018771725,0.0012839761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99992704,0.000016630645,0.0000042332276,0.000017245506,0.000013299276,0.000021388534],"domain_scores_gemma":[0.99996126,0.000008930227,0.000014361018,0.000003948083,0.000003792484,0.000007772134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015511233,0.00019698507,0.00019159984,0.000098726,0.00008423796,0.000111612215,0.00015214876,0.00027984282,0.00081891316],"category_scores_gemma":[0.0001101863,0.000053070322,0.00019808048,0.000074736534,0.00019242665,0.00013519243,0.00014558772,0.00036706115,0.00020064627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034586192,0.00012420205,0.00052873266,0.00010480159,0.000009816074,0.000058323025,0.000015553911,0.00009211368,0.9881302,0.00018874544,0.00020985171,0.010191812],"study_design_scores_gemma":[0.00016689971,0.018842563,0.0144992415,0.000069930706,0.00009433514,0.0014112684,0.000047544785,0.00058209966,0.94933695,0.00023454468,0.014703062,0.00001151092],"about_ca_topic_score_codex":0.00043863786,"about_ca_topic_score_gemma":0.0003926297,"teacher_disagreement_score":0.00081891316,"about_ca_system_score_codex":0.00013616015,"about_ca_system_score_gemma":0.00011952174,"threshold_uncertainty_score":0.0027395487},"labels":[],"label_agreement":null},{"id":"W2343258574","doi":"10.1080/19490976.2016.1182293","title":"A humanized microbiota mouse model of ovalbumin-induced lung inflammation","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; Michael Smith Health Research BC; BC Children's Hospital; Vancouver Infectious Diseases Centre; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Immunology; Humanized mouse; Veillonella; Gut flora; Immune system; Asthma; Ovalbumin; Inflammation; Hygiene hypothesis; Bacteria; Streptococcus; Genetics","score_opus":0.014459203807547593,"score_gpt":0.25259967740759776,"score_spread":0.23814047360005017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343258574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97735006,0.0029508881,0.011415432,0.00095252827,0.00040542104,0.00027618822,0.0030923935,0.00055781374,0.0029993348],"genre_scores_gemma":[0.96847486,0.0023398655,0.011090753,0.00047101456,0.00010114953,0.00061403186,0.00251906,0.00016294494,0.014226285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990681,0.00018221702,0.00008057449,0.0002968681,0.00022073211,0.00015156019],"domain_scores_gemma":[0.9993623,0.000059973474,0.0002331411,0.00008640811,0.00004054403,0.00021765112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008625486,0.0012236562,0.0007263418,0.001564114,0.0005432747,0.0008470026,0.0005470059,0.0016179788,0.0052946624],"category_scores_gemma":[0.00030726258,0.00051507936,0.0008437395,0.0005275531,0.00091306167,0.0007973755,0.00058197626,0.0024152144,0.0010058848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018589011,0.0009807788,0.0009537244,0.00012058471,0.00003780925,0.00051297713,0.00009517772,0.00017896866,0.9917516,0.0006637003,0.00028482047,0.0025609715],"study_design_scores_gemma":[0.0009318108,0.011540164,0.023030829,0.00015924522,0.00027707568,0.0056453,0.0004960914,0.004630172,0.9333287,0.0011937175,0.01867942,0.00008747089],"about_ca_topic_score_codex":0.0006511,"about_ca_topic_score_gemma":0.0011174893,"teacher_disagreement_score":0.0052946624,"about_ca_system_score_codex":0.000576077,"about_ca_system_score_gemma":0.0005767277,"threshold_uncertainty_score":0.017712355},"labels":[],"label_agreement":null},{"id":"W2357888714","doi":"10.1080/19490976.2016.1188248","title":"Rebooting the microbiome","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Colitis; Biology; Cecum; Gut flora; Microbiome; Inflammatory bowel disease; Context (archaeology); Immunology; Salmonella; Antibiotics; Inflammation; Microbiology; Barrier function; Disease; Bacteria; Bioinformatics; Internal medicine; Medicine","score_opus":0.006437680663314772,"score_gpt":0.22761587600198846,"score_spread":0.2211781953386737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2357888714","genre_codex":"review","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2517597,0.26396465,0.06972914,0.24145162,0.04541193,0.00018332055,0.0011499083,0.002571483,0.12377817],"genre_scores_gemma":[0.685291,0.106855266,0.034372337,0.07663315,0.0118805915,0.00018782137,0.00067113014,0.0009220792,0.083186634],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992279,0.0002757591,0.00003204414,0.00012328745,0.00018184302,0.00015909076],"domain_scores_gemma":[0.99895394,0.00014432533,0.00010281115,0.00013760198,0.00017315308,0.00048814106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012017018,0.00047332005,0.0005302055,0.00087725505,0.000930387,0.003089137,0.0005852464,0.0014994529,0.010775054],"category_scores_gemma":[0.0019295996,0.00019873372,0.0003923884,0.00031760143,0.002159436,0.0038657594,0.004052128,0.0031433962,0.0030950177],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073390023,0.00023803696,0.0110558905,0.0024356672,0.00028010856,0.002341983,0.00625982,0.00088208937,0.17541113,0.1121103,0.13497554,0.5532756],"study_design_scores_gemma":[0.000031538428,0.00028547086,0.0062498758,0.00068981416,0.00005647773,0.0011654261,0.0036365944,0.0003346321,0.006976637,0.034985337,0.9455446,0.000043564098],"about_ca_topic_score_codex":0.00073872914,"about_ca_topic_score_gemma":0.0017985351,"teacher_disagreement_score":0.010775054,"about_ca_system_score_codex":0.0006328383,"about_ca_system_score_gemma":0.0014553588,"threshold_uncertainty_score":0.036046147},"labels":[],"label_agreement":null},{"id":"W2484995089","doi":"10.1080/19490976.2016.1216747","title":"Partial recovery of microbiomes after antibiotic treatment","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Metagenomics; Microbiome; Biology; Antibiotics; Shotgun sequencing; Antibiotic resistance; Population; Resistome; Genetics; Microbiology; Genome; Gene; Computational biology; Medicine","score_opus":0.007303121138129212,"score_gpt":0.23800504620480467,"score_spread":0.23070192506667547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2484995089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99062365,0.0030279893,0.00250644,0.00027194267,0.000046555597,0.000034187917,0.0025081735,0.0001282182,0.00085280254],"genre_scores_gemma":[0.99097484,0.0008779336,0.0024199707,0.00032074496,0.000024936382,0.000057910744,0.004014877,0.00005971798,0.0012489869],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923086,0.000088682915,0.000044648143,0.00017588463,0.00027391053,0.00018605098],"domain_scores_gemma":[0.99925476,0.00012000012,0.00018751952,0.00013555947,0.00014173883,0.00016036273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003672389,0.0003401839,0.0010102292,0.00044273792,0.00039900801,0.0008316847,0.00021848608,0.000571554,0.0019084214],"category_scores_gemma":[0.0012869505,0.00019587985,0.0006305481,0.00052635063,0.00037044822,0.00041714375,0.0007592389,0.0010687119,0.0006531021],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000989946,0.000055909146,0.017386558,0.00016817008,0.00010966813,0.00022287754,0.00015194724,0.00018229776,0.95973897,0.000058720943,0.00035909654,0.020575734],"study_design_scores_gemma":[0.000030213532,0.0010668276,0.6658104,0.000063800544,0.00016072132,0.0014095735,0.0006238633,0.0013945099,0.31559846,0.00047874197,0.013313584,0.0000493241],"about_ca_topic_score_codex":0.0014155229,"about_ca_topic_score_gemma":0.0014499141,"teacher_disagreement_score":0.0019084214,"about_ca_system_score_codex":0.0002901011,"about_ca_system_score_gemma":0.00040313188,"threshold_uncertainty_score":0.006384313},"labels":[],"label_agreement":null},{"id":"W2562870013","doi":"10.1080/19490976.2016.1273998","title":"Fecal microbiota transplant in severe and severe-complicatedClostridium difficile: A promising treatment approach","year":2016,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Clostridium difficile; Medicine; Colonoscopy; Colectomy; Fecal bacteriotherapy; Perforation; Cohort; Surgery; Mortality rate; Internal medicine; Refractory (planetary science); Enterocolitis; Disease; Ulcerative colitis; Colorectal cancer; Biology; Antibiotics","score_opus":0.023561866013237842,"score_gpt":0.2620679649181969,"score_spread":0.23850609890495905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562870013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9427899,0.03249281,0.013867082,0.005064846,0.00040176505,0.00044558002,0.00007499799,0.00017813404,0.0046847938],"genre_scores_gemma":[0.972494,0.012763043,0.011181007,0.0018135858,0.0007600521,0.00016915025,0.00019525824,0.00001676134,0.00060711434],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9998889,0.000038989936,0.000013071706,0.000020392037,0.000012268868,0.000026376578],"domain_scores_gemma":[0.99978036,0.000035969402,0.000060044986,0.000018702047,0.00001392971,0.000091011134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003643948,0.00028674418,0.00039747372,0.00022721097,0.00028485994,0.00032238703,0.00021474929,0.0003140512,0.0009863165],"category_scores_gemma":[0.0004888554,0.000058962374,0.00040217725,0.0001268779,0.0002459902,0.0003625147,0.00032563973,0.00058689207,0.000173922],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0054437337,0.0052485075,0.06923347,0.0010982213,0.0002832606,0.0055476744,0.00019767915,0.00084821234,0.041383896,0.0011865015,0.0052122967,0.8643166],"study_design_scores_gemma":[0.0084984545,0.16085453,0.60581416,0.0024710565,0.0012556476,0.09462614,0.0017509251,0.008328149,0.044181403,0.0060781785,0.066004656,0.00013664982],"about_ca_topic_score_codex":0.00018937494,"about_ca_topic_score_gemma":0.00055264507,"teacher_disagreement_score":0.0009863165,"about_ca_system_score_codex":0.00017574022,"about_ca_system_score_gemma":0.0005080342,"threshold_uncertainty_score":0.0032995343},"labels":[],"label_agreement":null},{"id":"W2570248060","doi":"10.1080/19490976.2016.1278105","title":"Fecal microbial transplantation as a therapeutic option in patients colonized with antibiotic resistant organisms","year":2017,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Clostridium difficile; Antibiotics; Fecal bacteriotherapy; Antibiotic resistance; Colonisation resistance; Transplantation; Biology; Inflammatory bowel disease; Disease; Gut flora; Intensive care medicine; Microbiome; Enterocolitis; Microbiology; Medicine; Immunology; Internal medicine; Bioinformatics","score_opus":0.05373423057331872,"score_gpt":0.35513117287300416,"score_spread":0.30139694229968544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2570248060","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00018311379,0.99755424,0.000075292075,0.00092052005,0.0005420243,0.0000031751065,0.000008666697,0.000003327118,0.00070954394],"genre_scores_gemma":[0.0015432878,0.9966118,0.00016320791,0.00060462713,0.0006512584,0.0000048150096,0.000018423176,0.0000013608573,0.00040119537],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.99981886,0.00006620289,0.000026400548,0.000021121305,0.000051880394,0.000015561356],"domain_scores_gemma":[0.99973243,0.00014183391,0.000045424844,0.0000056430567,0.000048532274,0.000026215426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004166712,0.00035204104,0.00069294573,0.0010551256,0.00020436733,0.00063125277,0.00046458398,0.001067346,0.003107302],"category_scores_gemma":[0.000988302,0.000069399626,0.00046930052,0.0007375825,0.00032316588,0.00066275743,0.0004220685,0.0013347764,0.0007844596],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013105823,0.00005751686,0.00037221445,0.02013015,0.00010677133,0.0006408284,0.00012961675,0.0001415844,0.0009760202,0.0035979492,0.048114646,0.9256016],"study_design_scores_gemma":[0.00003739252,0.00016195688,0.0017340722,0.015856149,0.00022666098,0.006225734,0.00019365113,0.00008442824,0.00040958976,0.0021485665,0.9729001,0.000021650772],"about_ca_topic_score_codex":0.00045708255,"about_ca_topic_score_gemma":0.0014127048,"teacher_disagreement_score":0.003107302,"about_ca_system_score_codex":0.00024998598,"about_ca_system_score_gemma":0.0006914697,"threshold_uncertainty_score":0.01039499},"labels":[],"label_agreement":null},{"id":"W2591891851","doi":"10.1080/19490976.2017.1293224","title":"Fecal microbiota transplantation in metabolic syndrome: History, present and future","year":2017,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":309,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Fecal bacteriotherapy; Biology; Metabolic syndrome; Clostridium difficile; Insulin resistance; Gut flora; Dysbiosis; Disease; Transplantation; Inflammatory bowel disease; Microbiome; Intensive care medicine; Colonisation resistance; Immunology; Bioinformatics; Diabetes mellitus; Microbiology; Medicine; Internal medicine; Antibiotics; Endocrinology","score_opus":0.0751397130310381,"score_gpt":0.35601115325032623,"score_spread":0.2808714402192881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2591891851","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007116495,0.99892706,0.000030469731,0.000545354,0.00016079812,8.8277636e-7,0.000004254893,0.0000018182348,0.0002581666],"genre_scores_gemma":[0.00064697134,0.9985618,0.00006326823,0.00023865796,0.00034239393,0.0000014365594,0.0000061300707,7.2088903e-7,0.00013863073],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997812,0.000062129046,0.000042410407,0.00003475697,0.00005985939,0.000019687774],"domain_scores_gemma":[0.9991518,0.0005085083,0.00010199061,0.000021354512,0.0001490715,0.00006720447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008123616,0.00046462056,0.0009129307,0.0014904907,0.00029450387,0.0011138698,0.00051169086,0.0012193559,0.0031621468],"category_scores_gemma":[0.001378813,0.00016429728,0.00049953215,0.0016445506,0.0007482241,0.0016125345,0.0006429152,0.0018304356,0.0008544172],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011920568,0.00005383993,0.0005469001,0.013845919,0.000085118976,0.00030501728,0.00010346187,0.00014473205,0.0005413756,0.003931592,0.018459396,0.9618634],"study_design_scores_gemma":[0.000025024836,0.00019782395,0.0025531845,0.015639279,0.00027234122,0.0039833067,0.0003066451,0.00012261176,0.0004791759,0.0060950513,0.9702833,0.000042129876],"about_ca_topic_score_codex":0.0009643776,"about_ca_topic_score_gemma":0.0016245556,"teacher_disagreement_score":0.0031621468,"about_ca_system_score_codex":0.00047031595,"about_ca_system_score_gemma":0.0011972305,"threshold_uncertainty_score":0.010578454},"labels":[],"label_agreement":null},{"id":"W2736759732","doi":"10.1080/19490976.2017.1353848","title":"The risk of inflammatory bowel disease flares after fecal microbiota transplantation: Systematic review and meta-analysis","year":2017,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Inflammatory bowel disease; Biology; Fecal bacteriotherapy; Transplantation; Disease; Meta-analysis; Inflammatory Bowel Diseases; Feces; Immunology; Crohn's disease; Internal medicine; Microbiology; Medicine; Clostridium difficile; Antibiotics","score_opus":0.05946497140899968,"score_gpt":0.35492602584157473,"score_spread":0.29546105443257503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2736759732","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0030155233,0.99592555,0.0002959594,0.000110556626,0.000076813296,0.00013797995,0.00027986744,0.0000139568265,0.00014379795],"genre_scores_gemma":[0.11619963,0.87986636,0.001410109,0.0005949971,0.00022633292,0.0008003331,0.0006007059,0.000025181342,0.0002764001],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9918812,0.003551505,0.0025998252,0.0008270828,0.0008794696,0.00026096345],"domain_scores_gemma":[0.9820019,0.0134141,0.0028592737,0.0004033009,0.0011059537,0.00021545122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011053714,0.002811574,0.01854653,0.008041266,0.0006352745,0.0031083596,0.0020596688,0.0023483627,0.0034598294],"category_scores_gemma":[0.029011289,0.0015740794,0.038582407,0.009021852,0.0006219616,0.0017702399,0.0015819028,0.0020129432,0.00027918458],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015750601,0.00002212699,0.0035414358,0.41270712,0.5701249,0.00015189691,0.00008308568,0.0004848941,0.00015755395,0.00009370536,0.0005268329,0.010531324],"study_design_scores_gemma":[0.00033333478,0.00014251923,0.0036399306,0.026485417,0.9674895,0.00013219245,0.000045590914,0.00017940627,0.00009457094,0.0001288399,0.0013065429,0.000022184975],"about_ca_topic_score_codex":0.0069006938,"about_ca_topic_score_gemma":0.014676751,"teacher_disagreement_score":0.01854653,"about_ca_system_score_codex":0.0026478537,"about_ca_system_score_gemma":0.0027991282,"threshold_uncertainty_score":0.05845833},"labels":[],"label_agreement":null},{"id":"W2755829603","doi":"10.1080/19490976.2017.1378291","title":"A polymicrobial view of disease potential in Crohn's-associated adherent-invasive E. coli","year":2017,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Université Paris-Est Créteil Val-de-Marne; University of Southern Queensland","keywords":"Biology; Crohn's disease; Disease; Colonization; Microbiology; Escherichia coli; Pathovar; Microbiome; Inflammatory bowel disease; Enterobacteriaceae; Inflammation; Crohn disease; Immunology; Bacteria; Bioinformatics; Pathology; Genetics; Medicine","score_opus":0.01134561052031622,"score_gpt":0.2720740562266634,"score_spread":0.2607284457063472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755829603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5909951,0.28477532,0.02274184,0.04456049,0.0017176889,0.00007776925,0.00047123752,0.00019777066,0.05446285],"genre_scores_gemma":[0.9176122,0.054273706,0.012785017,0.0035663557,0.0013054309,0.0000523558,0.00017142497,0.000028384984,0.010205174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998591,0.000050476014,0.000011621368,0.00002053275,0.000027637876,0.000030594587],"domain_scores_gemma":[0.99979407,0.000052257685,0.00003929418,0.000013087941,0.000030801708,0.00007048866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040939415,0.00039802957,0.00021425945,0.0016429839,0.00033372294,0.0011006629,0.00043854193,0.00097173074,0.0036121805],"category_scores_gemma":[0.0002586135,0.00014944944,0.00029822817,0.00045665333,0.0013358345,0.0014979544,0.000574235,0.0010832079,0.00059584813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015819,0.00023282669,0.027250862,0.002370264,0.00008632229,0.009525392,0.0016371723,0.0007866656,0.8160277,0.057846162,0.0050079264,0.07764683],"study_design_scores_gemma":[0.00023973962,0.0024944446,0.28514844,0.0016202708,0.0004344387,0.053659633,0.00900611,0.005804184,0.20697165,0.13814889,0.29630658,0.00016564773],"about_ca_topic_score_codex":0.0005111568,"about_ca_topic_score_gemma":0.00066077296,"teacher_disagreement_score":0.0036121805,"about_ca_system_score_codex":0.0004487885,"about_ca_system_score_gemma":0.00021841962,"threshold_uncertainty_score":0.012084007},"labels":[],"label_agreement":null},{"id":"W2771159315","doi":"10.1080/19490976.2017.1408763","title":"Removal of the cecum affects intestinal fermentation, enteric bacterial community structure, and acute colitis in mice","year":2017,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"Alberta Innovates Bio Solutions; Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency","keywords":"Cecum; Biology; Citrobacter rodentium; Butyrate; Lachnospiraceae; Colitis; Microbiology; Short-chain fatty acid; Bacteria; Pathogen; Immunology; Fermentation; Firmicutes; Food science; Ecology","score_opus":0.010549653444132027,"score_gpt":0.2709046155093438,"score_spread":0.2603549620652118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2771159315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951769,0.0014647366,0.0010727848,0.00031617362,0.00010530907,0.00009375847,0.0007199901,0.00013877168,0.0009114388],"genre_scores_gemma":[0.99036306,0.0013753683,0.002701724,0.00039271946,0.000045994962,0.00019798335,0.0010726072,0.000065572516,0.0037850323],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926597,0.00010342928,0.00008498649,0.00017093132,0.0001330094,0.00024172284],"domain_scores_gemma":[0.99902713,0.00006882739,0.00028998754,0.000093162984,0.00005316256,0.00046773444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003998783,0.0012433963,0.0006522951,0.0012374253,0.00045749772,0.00074129674,0.00056102296,0.0013801588,0.0015356103],"category_scores_gemma":[0.0003207545,0.000880399,0.00089551235,0.00037727505,0.0009484509,0.00069256744,0.00055084703,0.0022773002,0.00049725233],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027182456,0.000886515,0.0007814732,0.00008927977,0.000026814218,0.00015278214,0.00006553305,0.00013455913,0.9934277,0.000095929565,0.00008092128,0.0015402568],"study_design_scores_gemma":[0.00068079226,0.01608068,0.03363706,0.00010678443,0.00019756102,0.0010896791,0.00038689884,0.002152206,0.9411265,0.00022914157,0.0042531593,0.000059553862],"about_ca_topic_score_codex":0.0011190841,"about_ca_topic_score_gemma":0.0021637536,"teacher_disagreement_score":0.0015356103,"about_ca_system_score_codex":0.00063297333,"about_ca_system_score_gemma":0.00062070624,"threshold_uncertainty_score":0.0051371455},"labels":[],"label_agreement":null},{"id":"W2789964792","doi":"10.1080/19490976.2018.1435244","title":"Anaerobic 4-hydroxyproline utilization: Discovery of a new glycyl radical enzyme in the human gut microbiome uncovers a widespread microbial metabolic activity","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Harvard University; Simons Foundation; National Aeronautics and Space Administration; U.S. Department of Energy; David and Lucile Packard Foundation","keywords":"Biology; Metabolic pathway; Microbial metabolism; Enzyme; Microbiome; Biochemistry; Bacteria; Human microbiome; Microbiology; Metabolism; Dehydratase; Archaea; Anaerobic exercise; Gene; Bioinformatics; Genetics; Physiology","score_opus":0.02587667459001287,"score_gpt":0.30172530252886365,"score_spread":0.2758486279388508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789964792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853195,0.0090691615,0.004028986,0.0003831528,0.000033325017,0.000019210862,0.00047743518,0.00003780435,0.0006313881],"genre_scores_gemma":[0.98710656,0.004674642,0.006722198,0.000113153525,0.000048901675,0.000010185798,0.0005373454,0.000009818183,0.00077715784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991465,0.000013362194,0.000004390264,0.000032636985,0.000017736707,0.000017206885],"domain_scores_gemma":[0.99989414,0.00001636403,0.00003458815,0.000009195616,0.000013569608,0.000032110704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015083396,0.00029422154,0.00019244463,0.00044108072,0.00012891636,0.00039045495,0.00009515559,0.00035034557,0.00039119992],"category_scores_gemma":[0.00021521212,0.00013695301,0.00021321258,0.00029670153,0.00019903731,0.00021560234,0.00028584423,0.00029503193,0.00020472972],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003058891,0.0000307639,0.016869552,0.0001552693,0.000019765916,0.00037998616,0.0000815917,0.000117917036,0.9584212,0.00013281014,0.00010884585,0.023376504],"study_design_scores_gemma":[0.00003752094,0.0014212076,0.29747748,0.00009143767,0.00017437334,0.008129,0.00057269074,0.0037230228,0.66877663,0.0012653557,0.018283447,0.000047776157],"about_ca_topic_score_codex":0.00037381827,"about_ca_topic_score_gemma":0.000498774,"teacher_disagreement_score":0.00044108072,"about_ca_system_score_codex":0.00010006086,"about_ca_system_score_gemma":0.0001757094,"threshold_uncertainty_score":0.00130862},"labels":[],"label_agreement":null},{"id":"W2793152504","doi":"10.1080/19490976.2018.1445956","title":"FUT2 genotype and secretory status are not associated with fecal microbial composition and inferred function in healthy subjects","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; University of Alberta; University of Calgary; McMaster University; Sinai Health System; Mount Sinai Hospital; Lunenfeld-Tanenbaum Research Institute; Hospital for Sick Children; Public Health Ontario; University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Firmicutes; Genotype; Bacteroidetes; Gut flora; Proteobacteria; Genotyping; Genetics; Actinobacteria; ABO blood group system; Immunology; Microbiology; Gene; 16S ribosomal RNA","score_opus":0.00928377201587063,"score_gpt":0.234539444226972,"score_spread":0.22525567221110138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793152504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99947673,0.00009461636,0.00012093655,0.000018306811,0.0000057156813,0.0000023614227,0.00012025902,0.0000033683918,0.00015779224],"genre_scores_gemma":[0.99968135,0.00001899046,0.000052710955,0.000018851753,0.000005522193,0.0000026297278,0.00009880525,0.0000030108313,0.00011821594],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999556,0.00014157093,0.00003939265,0.0001397966,0.00005276837,0.00007040437],"domain_scores_gemma":[0.9992798,0.0002583415,0.0001719549,0.00013322388,0.00003670574,0.00011992818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063943974,0.00045337866,0.00047213514,0.00041156865,0.00038671592,0.0005200521,0.00021229647,0.0006132559,0.0021545978],"category_scores_gemma":[0.0017771154,0.0002915062,0.00037520262,0.00039362942,0.0003922719,0.00027023428,0.00023774996,0.00040756125,0.00025110418],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026427063,0.00010487177,0.98604685,0.00002914676,0.00030828934,0.0005860833,0.00020080103,0.00009313506,0.007296099,0.000105172745,0.00019689428,0.002390081],"study_design_scores_gemma":[0.00003611393,0.00028034736,0.9979559,0.0000046979353,0.00009733304,0.0005424495,0.00007757558,0.00036298382,0.00034850484,0.00012589143,0.00016249168,0.0000056417975],"about_ca_topic_score_codex":0.0014680317,"about_ca_topic_score_gemma":0.001252533,"teacher_disagreement_score":0.0021545978,"about_ca_system_score_codex":0.00010267396,"about_ca_system_score_gemma":0.0001334307,"threshold_uncertainty_score":0.007207811},"labels":[],"label_agreement":null},{"id":"W2795753451","doi":"10.1080/19490976.2018.1458180","title":"Bile acid oxidation byEggerthella lentastrains C592 and DSM 2243T","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Porphyrin Metabolism and Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hatch; U.S. Department of Veterans Affairs","keywords":"Chenodeoxycholic acid; Bile acid; Biochemistry; Lithocholic acid; Dehydrogenase; Strain (injury); Biology; Enzyme; Chemistry","score_opus":0.0045127795393083625,"score_gpt":0.21632301575195678,"score_spread":0.2118102362126484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2795753451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99669963,0.00020797043,0.0005916836,0.000062416,0.000019268167,0.000040897598,0.001023033,0.000028061635,0.0013270543],"genre_scores_gemma":[0.9854752,0.00031231568,0.002884291,0.00008855317,0.000012587161,0.000049112667,0.007604319,0.000043937533,0.0035297156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974746,0.000026943575,0.000051673214,0.00006213423,0.000068928144,0.00004284681],"domain_scores_gemma":[0.9998615,0.000016991538,0.0000549219,0.000021957336,0.000025917478,0.000018715808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000119198725,0.00071731606,0.00024030011,0.00025928824,0.00018431965,0.00048117203,0.00021065396,0.0002343013,0.00071052474],"category_scores_gemma":[0.00024097832,0.00016413427,0.00037731242,0.00025030892,0.0001520065,0.00019488616,0.0004370304,0.00032322315,0.0004572702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012277532,0.00004241473,0.002190957,0.000029167872,0.000010591523,0.00009129415,0.00002411062,0.000043209846,0.9960389,0.000024063942,0.000032372616,0.0013500837],"study_design_scores_gemma":[0.000026839469,0.00048703398,0.086619355,0.00002041543,0.00007566014,0.0009740029,0.0002980045,0.0007531139,0.9075193,0.000046583395,0.0031655144,0.000014368585],"about_ca_topic_score_codex":0.0057688802,"about_ca_topic_score_gemma":0.003835999,"teacher_disagreement_score":0.0057688802,"about_ca_system_score_codex":0.0002784225,"about_ca_system_score_gemma":0.00029445757,"threshold_uncertainty_score":0.011470616},"labels":[],"label_agreement":null},{"id":"W2800937882","doi":"10.1080/19490976.2017.1421888","title":"Inflammasomes make the case for littermate-controlled experimental design in studying host-microbiota interactions","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fonds Wetenschappelijk Onderzoek; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Biology; Dysbiosis; Host (biology); Gut flora; Innate immune system; Genetics; Inflammasome; Commensalism; Disease; Immunology; Immune system; Inflammation; Bacteria","score_opus":0.026643653648486094,"score_gpt":0.3109273138800522,"score_spread":0.2842836602315661,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800937882","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24975237,0.009052484,0.69205034,0.003726185,0.007970396,0.014073498,0.0077509717,0.0030471545,0.012576565],"genre_scores_gemma":[0.2783811,0.0028227814,0.63333625,0.0029725851,0.0006079748,0.06636455,0.0032637203,0.0019592082,0.010291782],"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9753042,0.011063132,0.0036881957,0.0044286638,0.004536952,0.0009789718],"domain_scores_gemma":[0.97901237,0.006479135,0.0033426906,0.008476386,0.0016259738,0.0010633996],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.022329908,0.0018947347,0.0025072775,0.0020701096,0.0019070349,0.001872551,0.0019780027,0.0028946153,0.0073999874],"category_scores_gemma":[0.014733167,0.0009705409,0.001632346,0.0013287485,0.0034542966,0.001595322,0.0022041048,0.005592454,0.0014564263],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023924103,0.00775842,0.0149393445,0.00658355,0.002188723,0.0024474915,0.0022886107,0.0012749133,0.8223038,0.033925705,0.00764041,0.074724965],"study_design_scores_gemma":[0.004601411,0.035850562,0.06964407,0.0024202277,0.0047545596,0.0062546935,0.0010218183,0.006985265,0.6193084,0.046778843,0.20185708,0.0005230422],"about_ca_topic_score_codex":0.0006644473,"about_ca_topic_score_gemma":0.0021843673,"teacher_disagreement_score":0.9776701,"about_ca_system_score_codex":0.00079433253,"about_ca_system_score_gemma":0.0015815557,"threshold_uncertainty_score":0.11809325},"labels":[],"label_agreement":null},{"id":"W2891585489","doi":"10.1080/19490976.2018.1506667","title":"Effective fecal microbiota transplantation for recurrent Clostridioides difficile infection in humans is associated with increased signalling in the bile acid-farnesoid X receptor-fibroblast growth factor pathway","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Alberta","funders":"Engineering and Physical Sciences Research Council; Medical Research Council; University of Nottingham; Alberta Health Services","keywords":"Farnesoid X receptor; Bile acid; FGF19; Fibroblast growth factor; Biology; Gut flora; Fecal bacteriotherapy; Transplantation; Downregulation and upregulation; G protein-coupled bile acid receptor; Receptor; Internal medicine; Microbiology; Endocrinology; Immunology; Clostridium difficile; Biochemistry; Nuclear receptor; Medicine; Transcription factor","score_opus":0.017023671750547663,"score_gpt":0.2686225704606767,"score_spread":0.2515988987101291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2891585489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992804,0.0043166536,0.00123729,0.00019962221,0.00006586829,0.00004799741,0.00007514702,0.00008050497,0.0011728108],"genre_scores_gemma":[0.99577725,0.0017285036,0.0015041851,0.00010706821,0.000033393182,0.000032260086,0.00018458544,0.000012791256,0.00061985035],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998863,0.000024019748,0.0000076104434,0.000017792177,0.000026596643,0.00003766148],"domain_scores_gemma":[0.9998796,0.000013597353,0.000046864967,0.000009128413,0.000008531627,0.000042237945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025346407,0.00029397957,0.00047729848,0.00018096389,0.00018942569,0.00031318053,0.00013745854,0.00027791012,0.0011749067],"category_scores_gemma":[0.00019710683,0.0000610896,0.00028962025,0.00012434837,0.00024725762,0.00015017197,0.00020458296,0.0005641836,0.00018525543],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044141854,0.0011628952,0.003238167,0.00046220265,0.00006866852,0.00043091187,0.0000666399,0.00016938391,0.9055866,0.00016305016,0.0004819025,0.08375544],"study_design_scores_gemma":[0.0007639146,0.091074176,0.20870799,0.00030307643,0.0003796726,0.0062802853,0.00055233075,0.0017467038,0.6726977,0.00040965766,0.017029641,0.000054730204],"about_ca_topic_score_codex":0.00025556964,"about_ca_topic_score_gemma":0.0006434087,"teacher_disagreement_score":0.0011749067,"about_ca_system_score_codex":0.00021956177,"about_ca_system_score_gemma":0.0002826268,"threshold_uncertainty_score":0.0039304495},"labels":[],"label_agreement":null},{"id":"W2897273439","doi":"10.1080/19490976.2018.1527167","title":"The intimate relationship between gut microbiota and cancer immunotherapy","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Agence Nationale de la Recherche","keywords":"Gut flora; Immunotherapy; Biology; Cancer immunotherapy; Cancer; Gut microbiome; Microbiome; Immune system; Immunology; Computational biology; Bioinformatics; Genetics","score_opus":0.017736687716884945,"score_gpt":0.306346215048291,"score_spread":0.28860952733140605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897273439","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.020665132,0.9515757,0.0024234601,0.019229693,0.001891318,0.000019393532,0.000055578585,0.000030921103,0.0041088033],"genre_scores_gemma":[0.11751556,0.86708313,0.0025377423,0.0051608155,0.0051561203,0.000023811332,0.000057259436,0.000013509252,0.0024521388],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996457,0.00014332458,0.00003163478,0.000040612347,0.000084536914,0.000054233904],"domain_scores_gemma":[0.99960345,0.0001639461,0.00010331522,0.000010481483,0.00006357101,0.000055341967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006206651,0.0002676504,0.0004213951,0.0005666313,0.00032147364,0.0013914495,0.0001922869,0.00088779524,0.0010726062],"category_scores_gemma":[0.0009871861,0.00010969681,0.0002905556,0.00037730613,0.0005110199,0.0008675482,0.0009974698,0.0011372572,0.0002723633],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068088825,0.00023140399,0.02188619,0.0066943634,0.00042122067,0.0023782225,0.0010465232,0.00087052555,0.054276176,0.027572807,0.03142859,0.852513],"study_design_scores_gemma":[0.00007552688,0.001262415,0.065491,0.0048532914,0.0005464928,0.010782079,0.0020197753,0.0011365637,0.01873967,0.031587023,0.86338943,0.000116787814],"about_ca_topic_score_codex":0.0003645904,"about_ca_topic_score_gemma":0.0007285213,"teacher_disagreement_score":0.0013914495,"about_ca_system_score_codex":0.00047885973,"about_ca_system_score_gemma":0.00052724214,"threshold_uncertainty_score":0.0035882592},"labels":[],"label_agreement":null},{"id":"W2899648148","doi":"10.1080/19490976.2018.1526583","title":"Inulin-type fructans improve active ulcerative colitis associated with microbiota changes and increased short-chain fatty acids levels","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Ministry of Agriculture and Forestry; University of Alberta","funders":"Canadian Institutes of Health Research; National Institutes of Health; University of Alberta; Crohn's and Colitis Foundation of Canada","keywords":"Fructan; Prebiotic; Inulin; Lachnospiraceae; Gut flora; Feces; Calprotectin; Biology; Butyrate; Ulcerative colitis; Short-chain fatty acid; Microbiology; Cecum; Inflammatory bowel disease; Prevotella; Gastroenterology; Internal medicine; Food science; Medicine; Biochemistry; Disease; Fermentation; Firmicutes; Bacteria; 16S ribosomal RNA; Fructose","score_opus":0.016829859782916033,"score_gpt":0.25485050490418953,"score_spread":0.2380206451212735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899648148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985713,0.0010133227,0.00011248177,0.000045992852,0.000015172604,0.00003588245,0.000037214864,0.000004641872,0.00016403908],"genre_scores_gemma":[0.9972572,0.0010968168,0.0005921905,0.00011211713,0.00002578608,0.00004054832,0.00014172621,0.0000034705527,0.00073033245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999145,0.000034487042,0.000005422136,0.000011327612,0.000013328719,0.000020943438],"domain_scores_gemma":[0.99989045,0.000021012473,0.000022266631,0.000009826245,0.000011843719,0.00004465866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026352357,0.0003877261,0.00083935476,0.00015994777,0.00015433587,0.0002168637,0.0001669069,0.00024742837,0.001456459],"category_scores_gemma":[0.00017585017,0.00010613911,0.00032591337,0.00013546845,0.0001868686,0.00018349147,0.00019367742,0.000715197,0.00011225561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.10502224,0.02253685,0.01073453,0.0010444759,0.000771175,0.00039419293,0.000214696,0.0008604786,0.70466214,0.00011478114,0.0006041802,0.1530403],"study_design_scores_gemma":[0.0115290675,0.61082953,0.18586071,0.0001718559,0.001478344,0.0008568909,0.000332173,0.0016155697,0.18005636,0.00021287301,0.0070142094,0.00004248883],"about_ca_topic_score_codex":0.00024556654,"about_ca_topic_score_gemma":0.00075062586,"teacher_disagreement_score":0.001456459,"about_ca_system_score_codex":0.000113687915,"about_ca_system_score_gemma":0.00017510893,"threshold_uncertainty_score":0.0048723817},"labels":[],"label_agreement":null},{"id":"W2900602034","doi":"10.1080/19490976.2018.1539599","title":"H2Oh No! The importance of reporting your water source in your in vivo microbiome studies","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia; Okanagan University College","funders":"Natural Sciences and Engineering Research Council of Canada; Crohn's and Colitis Canada; Child and Family Research Institute","keywords":"Microbiome; Gut microbiome; Biology; Water quality; Biotechnology; Zoology; Bioinformatics; Ecology","score_opus":0.02415081278495076,"score_gpt":0.29740140839472956,"score_spread":0.2732505956097788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900602034","genre_codex":"commentary","genre_gemma":"methods","domain_codex":null,"domain_gemma":"reporting","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":"reporting","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019366464,0.03127444,0.0101410765,0.65079725,0.2761585,0.0001502552,0.0007759673,0.00042908394,0.02833678],"genre_scores_gemma":[0.039814927,0.053048965,0.01620292,0.68553853,0.12019473,0.00065182685,0.0005856947,0.0009727825,0.08298968],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926242,0.0038231732,0.00061914144,0.0006524041,0.0019447883,0.00033626906],"domain_scores_gemma":[0.96853405,0.02006363,0.002181244,0.0014628443,0.006861917,0.00089636486],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.012329077,0.00047332613,0.00091944897,0.0005223077,0.0017820727,0.0033823394,0.0017327475,0.004898544,0.016097208],"category_scores_gemma":[0.03220731,0.00037366417,0.000780633,0.00051410496,0.0046953023,0.0043775043,0.0021041718,0.008611667,0.0067154155],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020556901,0.000036585545,0.000797915,0.0018608408,0.00005475009,0.0004815192,0.0011884777,0.00010880529,0.0035651934,0.0249226,0.90926886,0.05750899],"study_design_scores_gemma":[0.000010361015,0.000043846765,0.00067032856,0.000741054,0.000026441105,0.00016347342,0.00135384,0.00007823146,0.002617017,0.0081501985,0.986101,0.000044210134],"about_ca_topic_score_codex":0.0053551295,"about_ca_topic_score_gemma":0.009207442,"teacher_disagreement_score":0.9876709,"about_ca_system_score_codex":0.0019453114,"about_ca_system_score_gemma":0.0025177186,"threshold_uncertainty_score":0.06520313},"labels":[],"label_agreement":null},{"id":"W2900874694","doi":"10.1080/19490976.2018.1526581","title":"Immobilization of cadmium and lead by Lactobacillus rhamnosus GR-1 mitigates apical-to-basolateral heavy metal translocation in a Caco-2 model of the intestinal epithelium","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Heavy Metal Exposure and Toxicity","field":"Environmental Science","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care; Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lactobacillus rhamnosus; Cadmium; Intestinal epithelium; Chromosomal translocation; Biology; Epithelium; Metal; Caco-2; Environmental chemistry; Microbiology; In vitro; Chemistry; Lactobacillus; Food science; Biochemistry","score_opus":0.009748337751731746,"score_gpt":0.21821817346475536,"score_spread":0.2084698357130236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900874694","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99371994,0.0014395631,0.0029086564,0.00023302615,0.000043527314,0.00002475152,0.00021626876,0.00016464082,0.0012497657],"genre_scores_gemma":[0.9911295,0.001005749,0.0050668586,0.00013927494,0.000011306747,0.000030938812,0.00040556156,0.000021984079,0.0021888162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997316,0.00005082391,0.000025420668,0.000048102316,0.00006718315,0.00007688635],"domain_scores_gemma":[0.9999386,0.000007873072,0.000021208107,0.0000069485313,0.000011278977,0.000014070622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018522752,0.00039609557,0.00039550784,0.00018046265,0.00012819069,0.00028453855,0.00037694053,0.0004205664,0.0006094734],"category_scores_gemma":[0.00012503382,0.00018505062,0.0004146907,0.00014957218,0.00015427098,0.00016765419,0.00029931258,0.0004480031,0.0002813637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007176505,0.000024519057,0.000075071046,0.000036498288,0.000004561196,0.000019561443,0.000009702484,0.00006297558,0.99907386,0.00002101234,0.000037881593,0.0005624988],"study_design_scores_gemma":[0.0000132244695,0.000604498,0.0020276767,0.000009501539,0.000019669593,0.00008616113,0.00004877933,0.0018292259,0.9938646,0.000013880289,0.0014749313,0.00000779758],"about_ca_topic_score_codex":0.0018438409,"about_ca_topic_score_gemma":0.002522481,"teacher_disagreement_score":0.0018438409,"about_ca_system_score_codex":0.00023318853,"about_ca_system_score_gemma":0.0002568859,"threshold_uncertainty_score":0.0036662817},"labels":[],"label_agreement":null},{"id":"W2920934181","doi":"10.1080/19490976.2019.1586037","title":"The success of fecal microbial transplantation in Clostridium difficile infection correlates with bacteriophage relative abundance in the donor: a retrospective cohort study","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Alberta","funders":"University of Alberta; Canadian Institutes of Health Research; Health Canada; Alberta Innovates - Health Solutions","keywords":"Clostridium difficile; Metagenomics; Biology; Bacteriophage; Microbiology; Gammaproteobacteria; Transplantation; Feces; UniFrac; Microbiome; Internal medicine; Escherichia coli; Medicine; Bacteria; Antibiotics; Bioinformatics; Genetics","score_opus":0.006524558919011386,"score_gpt":0.25065202597824315,"score_spread":0.24412746705923177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920934181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991811,0.00021581916,0.00017080894,0.000017713775,0.000007488241,0.000004610838,0.00015531608,0.0000031725538,0.00024398629],"genre_scores_gemma":[0.9996333,0.00007655161,0.00006983444,0.000020083298,0.000007453504,0.0000032519185,0.00012311747,0.0000032642602,0.00006305135],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940145,0.000129105,0.00007652597,0.00017097258,0.00009522194,0.00012675613],"domain_scores_gemma":[0.9977457,0.0003012945,0.0011188749,0.00036573852,0.00015778611,0.00031054954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012710213,0.00020176262,0.0003008939,0.00043524557,0.0005358347,0.000802191,0.00029608834,0.00033137025,0.0015511224],"category_scores_gemma":[0.002877255,0.00021825059,0.00046765513,0.00074747676,0.00037092052,0.0004521426,0.00037169873,0.00064120156,0.00025547805],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015406327,0.000014252728,0.99830353,0.000009191027,0.000054735385,0.000060248098,0.000040917574,0.000016996204,0.00038784707,0.000014873122,0.00006247377,0.0008807543],"study_design_scores_gemma":[0.000006851766,0.00023189232,0.9979522,0.000015010058,0.000076128556,0.0008882693,0.0001569409,0.00011288226,0.00025575262,0.000024978797,0.00027171837,0.00000744356],"about_ca_topic_score_codex":0.0016241396,"about_ca_topic_score_gemma":0.0018644886,"teacher_disagreement_score":0.0016241396,"about_ca_system_score_codex":0.00021892064,"about_ca_system_score_gemma":0.0002637131,"threshold_uncertainty_score":0.006721914},"labels":[],"label_agreement":null},{"id":"W2944949127","doi":"10.1080/19490976.2019.1614363","title":"The delicate balance between Entamoeba histolytica, mucus and microbiota","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Institute of Nutrition, Metabolism and Diabetes; Canadian Institutes of Health Research; Consejo Nacional de Ciencia y Tecnología","keywords":"Mucus; Biology; Microbiology; Entamoeba histolytica; Pathogenesis; Virulence; Innate immune system; Gut flora; Mucin; Immunology; Dysbiosis; Immune system; Genetics; Gene","score_opus":0.004851023859288848,"score_gpt":0.22659948879126784,"score_spread":0.221748464931979,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944949127","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29160684,0.62484854,0.014039465,0.046868518,0.0023547297,0.00008449483,0.0002142294,0.00025301706,0.019730149],"genre_scores_gemma":[0.793183,0.1787146,0.01125799,0.0071720416,0.0022696601,0.00007544966,0.00011165123,0.000041204017,0.0071743163],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99939704,0.0001931034,0.000046344372,0.000071274386,0.00015949448,0.00013276424],"domain_scores_gemma":[0.9996183,0.00007371255,0.0001070239,0.000016409109,0.00006291334,0.00012166099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064472936,0.00036247273,0.00050351047,0.00052617735,0.00040564666,0.002427064,0.00044288818,0.0013530061,0.0010115018],"category_scores_gemma":[0.00063217693,0.00022084227,0.00017207337,0.00023871509,0.0010743615,0.0020291593,0.0011943062,0.0010994525,0.00036063767],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080122787,0.0002737519,0.019713812,0.0042037526,0.00025305676,0.00213136,0.0012786635,0.00067212875,0.6259546,0.024751954,0.009329373,0.3106363],"study_design_scores_gemma":[0.00017123774,0.0046167118,0.22612958,0.00372913,0.00044080892,0.01628497,0.015313381,0.0037191252,0.12529373,0.05811854,0.54586077,0.000322054],"about_ca_topic_score_codex":0.0005020519,"about_ca_topic_score_gemma":0.0009909288,"teacher_disagreement_score":0.002427064,"about_ca_system_score_codex":0.00048730287,"about_ca_system_score_gemma":0.0007734623,"threshold_uncertainty_score":0.0035356283},"labels":[],"label_agreement":null},{"id":"W2945760870","doi":"10.1080/19490976.2019.1611153","title":"In search of stool donors: a multicenter study of prior knowledge, perceptions, motivators, and deterrents among potential donors for fecal microbiota transplantation","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Queen's University; University of Alberta","funders":"Medical Research Council","keywords":"Donation; Fecal bacteriotherapy; Medicine; Altruism (biology); Transplantation; Logistic regression; Feces; Family medicine; Internal medicine; Psychology; Social psychology; Biology; Clostridium difficile","score_opus":0.013581988498472359,"score_gpt":0.3028556581285237,"score_spread":0.28927366963005136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945760870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995016,0.000064167754,0.00003159043,0.000045764697,0.00000478473,0.000031837342,0.00010034975,0.0000010352896,0.00021890097],"genre_scores_gemma":[0.99923027,0.000065483255,0.00008655404,0.00014412767,0.000012152837,0.00004956199,0.00013770176,0.0000020088157,0.0002721237],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992306,0.00032902308,0.000078975405,0.00011490623,0.00009380082,0.00015270701],"domain_scores_gemma":[0.99745315,0.00044670203,0.0008880393,0.00018500439,0.00028839035,0.0007387934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021046945,0.00033665032,0.000466253,0.00043623894,0.0010923814,0.000929156,0.00039535385,0.000870988,0.0020713885],"category_scores_gemma":[0.00465885,0.00047189018,0.0004330414,0.00060576963,0.0002847972,0.00091814017,0.00064870086,0.0009049243,0.0006082707],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022907513,0.0008595226,0.99584466,0.000024256946,0.0000409658,0.00012907443,0.0011785959,0.0000132892765,0.00019996586,0.000014365392,0.00015369641,0.0013125036],"study_design_scores_gemma":[0.00005032551,0.0018479632,0.9932272,0.00002922358,0.000046545618,0.0003436908,0.003634004,0.00013472686,0.000067818684,0.000021848387,0.0005862401,0.000010441575],"about_ca_topic_score_codex":0.00551774,"about_ca_topic_score_gemma":0.0060182307,"teacher_disagreement_score":0.00551774,"about_ca_system_score_codex":0.00039709345,"about_ca_system_score_gemma":0.000518344,"threshold_uncertainty_score":0.011130869},"labels":[],"label_agreement":null},{"id":"W2950904866","doi":"10.1080/19490976.2018.1494103","title":"Links between environment, diet, and the hunter-gatherer microbiome","year":2018,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":170,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"National Center for Complementary and Integrative Health; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Microbiome; Context (archaeology); Ecology; Biodiversity; Zoology; Human microbiome; Metagenomics; Genetics","score_opus":0.0074646509986366245,"score_gpt":0.2326769957509976,"score_spread":0.22521234475236096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950904866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99221003,0.005917384,0.00057907496,0.0003450059,0.0000164717,0.000004748294,0.000121412835,0.0000064725323,0.000799487],"genre_scores_gemma":[0.9967326,0.0020074048,0.0006945303,0.00011113691,0.000019390414,0.0000060621983,0.000059554968,0.000003278464,0.00036617048],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99977,0.00009960003,0.000008183695,0.000040082294,0.00003229271,0.00004981039],"domain_scores_gemma":[0.99950576,0.00014511839,0.00016062299,0.000041790867,0.000049410835,0.00009722395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004168174,0.00021328474,0.00026361205,0.00051200454,0.00040353558,0.0008776639,0.00012952086,0.00030783963,0.0012149909],"category_scores_gemma":[0.0007711693,0.00013585098,0.00012874376,0.0005292267,0.0007072489,0.0003735671,0.00089392165,0.00032131275,0.00010016883],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063085527,0.00010065403,0.86737114,0.00035941828,0.00029496054,0.0007374748,0.0017900296,0.00022155918,0.09544487,0.00070098735,0.0003794389,0.03196859],"study_design_scores_gemma":[0.0000016509252,0.000096114396,0.99704427,0.000024465604,0.000030358173,0.00016436345,0.00058429723,0.000048238093,0.00091859186,0.00026584798,0.00081554125,0.000006134844],"about_ca_topic_score_codex":0.0021257359,"about_ca_topic_score_gemma":0.0068480023,"teacher_disagreement_score":0.0021257359,"about_ca_system_score_codex":0.00020843485,"about_ca_system_score_gemma":0.00033117665,"threshold_uncertainty_score":0.004226744},"labels":[],"label_agreement":null},{"id":"W2951541824","doi":"10.1080/19490976.2019.1629235","title":"Lipopolysaccharides modulate intestinal epithelial permeability and inflammation in a species-specific manner","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":282,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Crohn's and Colitis Canada","keywords":"Biology; TLR4; Inflammatory bowel disease; Inflammation; Pathogenesis; Microbiome; Lipopolysaccharide; Intestinal permeability; Immunology; Microbiology; Disease; Bioinformatics; Medicine; Pathology","score_opus":0.006700603352654949,"score_gpt":0.20715795396429795,"score_spread":0.200457350611643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951541824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969759,0.0016626145,0.0006620955,0.00009367533,0.000026202897,0.000015924752,0.000060079212,0.000011016498,0.0004925913],"genre_scores_gemma":[0.99834883,0.0007101724,0.00044162752,0.00006660261,0.000009853591,0.000009733231,0.00006375863,0.0000025780635,0.0003468643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998535,0.00006041102,0.000011609872,0.000016245749,0.00001962458,0.00003856381],"domain_scores_gemma":[0.99988925,0.000014776719,0.000041886757,0.0000127093745,0.000016173026,0.000025256693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001562701,0.00020490977,0.0001396635,0.00017083336,0.00008203987,0.00025596932,0.00007566007,0.00022368088,0.00089194905],"category_scores_gemma":[0.00017451703,0.00009746907,0.00021998568,0.00009411627,0.00018173529,0.00018472607,0.00020954477,0.00037820463,0.00015400715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004580791,0.00007090379,0.0010763956,0.000046277233,0.00001247356,0.00006651198,0.000026267853,0.000029500865,0.99647325,0.000042892567,0.000017886763,0.0016795219],"study_design_scores_gemma":[0.0001139757,0.0053973747,0.122778594,0.000041320265,0.00011317009,0.0010033163,0.0003791325,0.0008321255,0.8664377,0.00031881584,0.0025681846,0.000016344158],"about_ca_topic_score_codex":0.00008750591,"about_ca_topic_score_gemma":0.00014727341,"teacher_disagreement_score":0.00089194905,"about_ca_system_score_codex":0.000109027314,"about_ca_system_score_gemma":0.00009970816,"threshold_uncertainty_score":0.0029838681},"labels":[],"label_agreement":null},{"id":"W2983322908","doi":"10.1080/19490976.2019.1667722","title":"Origins of human milk microbiota: new evidence and arising questions","year":2019,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Breastfeeding Practices and Influences","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"Reseau canadien de recherche respiratoire; Canadian Lung Association; Research Manitoba; Canadian Institutes of Health Research; AllerGen; Canada Research Chairs; Heart and Stroke Foundation of Canada","keywords":"Biology; Breast milk; Breast feeding; Human breast milk; Function (biology); Breastfeeding; Bacteria; Immunology; Physiology; Genetics; Medicine","score_opus":0.03227211525713128,"score_gpt":0.32770270392308104,"score_spread":0.29543058866594973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2983322908","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0362341,0.81670505,0.005178043,0.13220999,0.0013058446,0.0000135338,0.00023095644,0.000026724623,0.008095713],"genre_scores_gemma":[0.31875098,0.6408877,0.00543664,0.02620443,0.007540602,0.000048501177,0.00021987932,0.000042163116,0.0008691762],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9948702,0.0017952657,0.00046897648,0.0015365917,0.000972107,0.0003568952],"domain_scores_gemma":[0.94766355,0.04329979,0.0025923618,0.0031034392,0.0024227132,0.0009180969],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015823536,0.00066599454,0.0018172209,0.0019127013,0.0012900168,0.004446313,0.0020679338,0.0037084909,0.003630185],"category_scores_gemma":[0.025600083,0.0005823727,0.00063044834,0.0020327042,0.015564187,0.010087572,0.0038669987,0.0055875876,0.0005245846],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001304308,0.0003527795,0.105978474,0.011236576,0.0009455574,0.0022766818,0.013168126,0.0011950297,0.005268733,0.24083152,0.015610054,0.6018322],"study_design_scores_gemma":[0.00010116523,0.00039273596,0.12790161,0.012825607,0.0006940957,0.0027396232,0.02916331,0.0013042437,0.0025975436,0.54563683,0.27634123,0.00030196685],"about_ca_topic_score_codex":0.006539668,"about_ca_topic_score_gemma":0.0056834677,"teacher_disagreement_score":0.015823536,"about_ca_system_score_codex":0.0018292215,"about_ca_system_score_gemma":0.0027345417,"threshold_uncertainty_score":0.08368379},"labels":[],"label_agreement":null},{"id":"W2998846131","doi":"10.1080/19490976.2019.1688065","title":"Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Hymenolepis diminuta; Biology; Microbiology; Lachnospiraceae; Immune system; Specific-pathogen-free; Gut flora; Bacteria; Immunity; Immunology; Helminths; Firmicutes; 16S ribosomal RNA; Cestoda","score_opus":0.014065466014238623,"score_gpt":0.2531747526091166,"score_spread":0.23910928659487796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998846131","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99723035,0.0005567195,0.00049062644,0.0001240738,0.000028361948,0.00004321432,0.0004958276,0.00010921099,0.0009214994],"genre_scores_gemma":[0.9941334,0.0004979396,0.00082975335,0.00015864841,0.000022003589,0.00010785421,0.0009229418,0.0000556344,0.0032718505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99965346,0.000040353607,0.000037998103,0.00010287422,0.000061915576,0.000103334096],"domain_scores_gemma":[0.99932766,0.00005602117,0.0002793176,0.00006957852,0.000038820424,0.00022854815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001906924,0.0007441768,0.00044786837,0.0006316816,0.00030113096,0.0005333999,0.000368027,0.0007310476,0.0016457778],"category_scores_gemma":[0.00023541802,0.00048665074,0.0005098573,0.00019995398,0.0006851181,0.00046157723,0.00031508162,0.0017921064,0.00065130455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008540782,0.00022987304,0.00088979554,0.000044315882,0.000007677531,0.00013312142,0.000039776285,0.000021752458,0.9968376,0.00004420285,0.000034427907,0.00086339173],"study_design_scores_gemma":[0.00014362212,0.005301382,0.047637664,0.000031412572,0.0000462212,0.001006697,0.0001945592,0.0004520596,0.9436485,0.00009757781,0.0014233412,0.00001690033],"about_ca_topic_score_codex":0.00052590383,"about_ca_topic_score_gemma":0.0011472573,"teacher_disagreement_score":0.0016457778,"about_ca_system_score_codex":0.00038325562,"about_ca_system_score_gemma":0.00021879002,"threshold_uncertainty_score":0.005505681},"labels":[],"label_agreement":null},{"id":"W3005506267","doi":"10.1080/19490976.2020.1717299","title":"Strain-level analysis of gut-resident pro-inflammatory viridans group Streptococci suppressed by long-term cotrimoxazole prophylaxis among HIV-positive children in Zimbabwe","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Department for International Development; Department for International Development, UK Government; Wellcome Trust; Medical Research Council; Wellcome","keywords":"Biology; Population; Antibiotics; Lactobacillus salivarius; Immunology; Cohort; Antimicrobial; Antibiotic resistance; Microbiology; Medicine; Internal medicine; Probiotic; Environmental health; Bacteria; Genetics","score_opus":0.011949991705192313,"score_gpt":0.23964625505256393,"score_spread":0.2276962633473716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3005506267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786085,0.00076278154,0.00014176928,0.000040030787,0.000004005131,0.0000107990345,0.0010423313,0.000003105605,0.00013433267],"genre_scores_gemma":[0.99819654,0.00032396198,0.0002685401,0.000063287924,0.0000042687034,0.00001500234,0.00095702143,0.0000042826773,0.00016715129],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996277,0.000061702194,0.000028650078,0.00011837385,0.00006474022,0.00009890053],"domain_scores_gemma":[0.99973565,0.00004173861,0.0001123242,0.000019872607,0.000059786038,0.00003061964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028409535,0.0003640479,0.0004175195,0.00055516843,0.0003874682,0.00070230156,0.00027501548,0.00042887492,0.00080042944],"category_scores_gemma":[0.0008970743,0.00024144264,0.00044641236,0.00080061133,0.0002669926,0.0002389781,0.00053546886,0.00047227222,0.00013919419],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004782288,0.000050428887,0.9302348,0.00017641037,0.00040614707,0.00023921234,0.0010023545,0.00019176834,0.060007807,0.00005692389,0.00021529863,0.006940638],"study_design_scores_gemma":[0.0000032546718,0.00009426606,0.9980192,0.000015236436,0.000081326776,0.00008444687,0.00039806956,0.00014643176,0.000834073,0.000013238251,0.000306381,0.000004014762],"about_ca_topic_score_codex":0.0222638,"about_ca_topic_score_gemma":0.03176135,"teacher_disagreement_score":0.0222638,"about_ca_system_score_codex":0.0004190171,"about_ca_system_score_gemma":0.00026078994,"threshold_uncertainty_score":0.04426843},"labels":[],"label_agreement":null},{"id":"W3014635511","doi":"10.1080/19490976.2020.1736973","title":"Human behavior, not race or geography, is the strongest predictor of microbial succession in the gut bacteriome of infants","year":2020,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kelowna General Hospital; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Crohn's and Colitis Canada; Canadian Association on Gerontology","keywords":"Microbiome; Dysbiosis; Biology; Context (archaeology); Disease; Race (biology); Human microbiome; Colonization; Hygiene hypothesis; Ecology; Immunology; Genetics; Immune system; Medicine","score_opus":0.029576506792195242,"score_gpt":0.33721096392394534,"score_spread":0.3076344571317501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014635511","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002838321,0.9981154,0.00013552855,0.00038346087,0.00015641964,0.0000034801612,0.00006035468,0.000006788018,0.0008547544],"genre_scores_gemma":[0.0012150527,0.998027,0.00014994065,0.00010773125,0.000088615874,0.000004276245,0.000051453793,0.0000016986577,0.00035417188],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9997894,0.000054328004,0.000027033995,0.00004657755,0.000062997424,0.000019592917],"domain_scores_gemma":[0.99955255,0.0002643797,0.000060793696,0.00001156254,0.00008467733,0.000026019237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048703633,0.0006669098,0.0010995064,0.0012247628,0.00022848904,0.00090908457,0.00041817792,0.00070145744,0.0037769345],"category_scores_gemma":[0.0012690797,0.00015408354,0.0006329498,0.0012808724,0.0003333967,0.0007474479,0.000576828,0.0009697298,0.0014226869],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007148147,0.000031437918,0.0014785217,0.020100502,0.00021054139,0.00012424667,0.00009294001,0.00012610726,0.00092084793,0.0017507217,0.0123460805,0.96274656],"study_design_scores_gemma":[0.000010377568,0.00016182673,0.01206783,0.017492546,0.0006840967,0.0020976576,0.00023774925,0.00010005631,0.0007904768,0.0024156617,0.96389574,0.0000460963],"about_ca_topic_score_codex":0.0019487177,"about_ca_topic_score_gemma":0.0026928908,"teacher_disagreement_score":0.0037769345,"about_ca_system_score_codex":0.00036949152,"about_ca_system_score_gemma":0.0011111906,"threshold_uncertainty_score":0.012635112},"labels":[],"label_agreement":null},{"id":"W3023250971","doi":"10.1080/19490976.2020.1755413","title":"Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Berberine and alkaloids research","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Canada; Canadian Institutes of Health Research; National Natural Science Foundation of China; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute","keywords":"Biology; Microbiome; Verrucomicrobia; Akkermansia; Firmicutes; Butyrate; Proteobacteria; Bacteroidetes; Berberine; Halomonas; Biochemistry; Bacteroides; Bacteria; Genetics; Fermentation","score_opus":0.0310125831210675,"score_gpt":0.2797945106806984,"score_spread":0.24878192755963088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3023250971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99140644,0.0033414348,0.0013020093,0.00012834977,0.00006577652,0.000036032798,0.0009015023,0.000052457464,0.0027658597],"genre_scores_gemma":[0.9932017,0.0012402468,0.0024378116,0.00017913347,0.000015019273,0.000039988838,0.00068503193,0.00001785596,0.0021831803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998671,0.000033308068,0.000010152885,0.000038192,0.000027306362,0.000023976125],"domain_scores_gemma":[0.99987054,0.00003614107,0.000033766722,0.000015446814,0.000019356583,0.000024852427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014089423,0.0002578338,0.00026138738,0.00019900089,0.00014255007,0.00024898813,0.000082204795,0.0003038351,0.001995138],"category_scores_gemma":[0.00026483106,0.00010851235,0.00018845231,0.00016967928,0.00020006648,0.00032396018,0.00014941893,0.00046563518,0.00025311654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008407653,0.00004725491,0.0005409435,0.000110460045,0.000016241924,0.000024790292,0.000023928285,0.000058593818,0.99463224,0.00006050321,0.00005304461,0.003591313],"study_design_scores_gemma":[0.00007437451,0.0044139447,0.031286955,0.000036561192,0.0000975233,0.0003148538,0.00018461754,0.0005653851,0.95643157,0.00027655312,0.006294563,0.000023180122],"about_ca_topic_score_codex":0.00028953576,"about_ca_topic_score_gemma":0.00064669404,"teacher_disagreement_score":0.001995138,"about_ca_system_score_codex":0.00012183662,"about_ca_system_score_gemma":0.00012965099,"threshold_uncertainty_score":0.006674409},"labels":[],"label_agreement":null},{"id":"W3037405765","doi":"10.1080/19490976.2020.1775538","title":"The autoimmune susceptibility gene, PTPN2 , restricts expansion of a novel mouse adherent-invasive E. coli","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences","keywords":"Biology; Microbiome; Inflammatory bowel disease; Pathogenesis; Gene; Immunology; Microbiology; Genetics; Pathogen; Disease","score_opus":0.020103027515782208,"score_gpt":0.24712295867847558,"score_spread":0.22701993116269337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3037405765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.984396,0.0006751834,0.010735392,0.00032691407,0.00008491908,0.00003680362,0.0009956345,0.0002349147,0.0025141682],"genre_scores_gemma":[0.9892175,0.0005107148,0.0046141944,0.00016265696,0.000022469543,0.000049527018,0.0008235067,0.00016407564,0.00443524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956185,0.000074339216,0.00003503271,0.00014036061,0.000103185586,0.00008520816],"domain_scores_gemma":[0.99959475,0.000067206056,0.00015576197,0.00003928051,0.000019910776,0.00012315853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002479368,0.00050074834,0.00026734156,0.000599751,0.00020843347,0.00051933184,0.00031952938,0.00065353676,0.0020751632],"category_scores_gemma":[0.00021865884,0.00026701653,0.00032231325,0.00021362545,0.00056837813,0.0003118942,0.00040494156,0.0013831287,0.0005817597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061483566,0.000017198894,0.00016389615,0.000010541303,0.0000031887082,0.00004251481,0.0000083971545,0.00003148781,0.99910647,0.00013414603,0.000033440025,0.0003872766],"study_design_scores_gemma":[0.00005187036,0.00034411083,0.008265014,0.000015159707,0.000029532779,0.00087719515,0.00011383572,0.0016602102,0.98539364,0.00016609409,0.003069831,0.000013477255],"about_ca_topic_score_codex":0.00059310975,"about_ca_topic_score_gemma":0.0015388905,"teacher_disagreement_score":0.0020751632,"about_ca_system_score_codex":0.00034148054,"about_ca_system_score_gemma":0.00024572533,"threshold_uncertainty_score":0.0069420934},"labels":[],"label_agreement":null},{"id":"W3042720625","doi":"10.1080/19490976.2020.1785802","title":"Cathelicidin-mediated lipopolysaccharide signaling via intracellular TLR4 in colonic epithelial cells evokes CXCL8 production","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Agriculture and Forestry; Albert and Margaret Alkek Foundation","keywords":"Cathelicidin; CXCL1; Biology; TLR4; Cell biology; Interleukin 8; TLR2; Secretion; Antimicrobial peptides; Signal transduction; Immunology; Innate immune system; Chemokine; Inflammation; Microbiology; Immune system; Antimicrobial; Endocrinology","score_opus":0.011814715389254262,"score_gpt":0.20319316215898311,"score_spread":0.19137844676972884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042720625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99265,0.0014991731,0.002553484,0.00038253583,0.00011061543,0.000032057047,0.0006139333,0.00010340526,0.0020547702],"genre_scores_gemma":[0.99386686,0.00057724165,0.0026351993,0.00011785171,0.000026116104,0.00004347583,0.0005189802,0.000009993902,0.0022043576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977964,0.000056749308,0.00002020684,0.000023042498,0.000040538223,0.00007980292],"domain_scores_gemma":[0.99986684,0.000025170888,0.00002353753,0.000021621074,0.00002426263,0.00003850156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019736032,0.00029956465,0.0002154129,0.00023367643,0.00022349668,0.00036928392,0.00011942023,0.0003486601,0.0028391853],"category_scores_gemma":[0.00016024377,0.0001198711,0.000279754,0.00016258704,0.0002049553,0.00033406419,0.0002756526,0.00081827276,0.000626127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029835955,0.000030492281,0.0003677474,0.000072147326,0.000003064994,0.00013046812,0.000025932868,0.000055101296,0.99722505,0.00006193244,0.0000889913,0.0016406694],"study_design_scores_gemma":[0.00006109245,0.0006001332,0.010292107,0.000022248987,0.0000108004915,0.00056084286,0.00018488496,0.0016843973,0.98281443,0.00013070845,0.0036281894,0.000010254577],"about_ca_topic_score_codex":0.0005036281,"about_ca_topic_score_gemma":0.00077313953,"teacher_disagreement_score":0.0028391853,"about_ca_system_score_codex":0.000317765,"about_ca_system_score_gemma":0.00024292692,"threshold_uncertainty_score":0.009498},"labels":[],"label_agreement":null},{"id":"W3048439996","doi":"10.1080/19490976.2020.1799734","title":"Vitamin D supplementation in pregnancy and early infancy in relation to gut microbiota composition and C. difficile colonization: implications for viral respiratory infections","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Children's Hospital; University of Manitoba; Impact; Children's Hospital Research Institute of Manitoba; University of British Columbia; Hospital for Sick Children; Public Health Ontario; SickKids Foundation; University of Toronto; McMaster University; Population Health Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gut flora; Breastfeeding; Vitamin D and neurology; Physiology; Breast feeding; Vitamin; Faecalibacterium prausnitzii; Lachnospiraceae; Immunology; Medicine; Pediatrics; Endocrinology","score_opus":0.012462380518435557,"score_gpt":0.27583664147986486,"score_spread":0.2633742609614293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048439996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99386406,0.0051741707,0.000045839693,0.00022543514,0.000009974972,0.0000054881007,0.00024387143,0.00000303946,0.0004282124],"genre_scores_gemma":[0.9979627,0.0014146406,0.00010872814,0.000065150554,0.0000074901027,0.000005981405,0.00012115801,0.0000016852852,0.00031256318],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996177,0.00010126978,0.000027835888,0.00007186324,0.00007108272,0.000110062836],"domain_scores_gemma":[0.9991716,0.00022860793,0.0003367762,0.000036273144,0.000085601925,0.00014117302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006215258,0.0002895493,0.0003742228,0.00038790354,0.00049555086,0.0006216173,0.00035678982,0.00057440525,0.0007892852],"category_scores_gemma":[0.002436628,0.00022386137,0.00053395465,0.00070812297,0.00034444247,0.00020797271,0.0003284186,0.00051553146,0.000078021025],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010910751,0.000046553952,0.9911726,0.000038324048,0.00009517741,0.00011208759,0.00012797216,0.00004119306,0.00075825484,0.000034302906,0.00010573317,0.0063767573],"study_design_scores_gemma":[0.000008371814,0.00011717788,0.9991159,0.000024550458,0.000061451785,0.00010172758,0.00012411484,0.000097835116,0.00012430473,0.000018759047,0.00020300521,0.0000028636705],"about_ca_topic_score_codex":0.18135925,"about_ca_topic_score_gemma":0.20614919,"teacher_disagreement_score":0.18135925,"about_ca_system_score_codex":0.0016877218,"about_ca_system_score_gemma":0.0017944571,"threshold_uncertainty_score":0.3606072},"labels":[],"label_agreement":null},{"id":"W3083389151","doi":"10.1080/19490976.2020.1810531","title":"Understanding the mechanisms of efficacy of fecal microbiota transplant in treating recurrent Clostridioides difficile infection and beyond: the contribution of gut microbial-derived metabolites","year":2020,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Versus Arthritis; Canadian Institutes of Health Research; University of Nottingham; Medical Research Council; National Institute for Health and Care Research","keywords":"Clostridioides; Biology; Fecal bacteriotherapy; Gut flora; Metabolite; Bile acid; Microbiology; Fidaxomicin; Clostridium difficile; Antibiotics; Immunology; Bacteria; Vancomycin; Biochemistry","score_opus":0.058218227528303974,"score_gpt":0.31138007002107965,"score_spread":0.2531618424927757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3083389151","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002494176,0.9987923,0.00011239128,0.00021295823,0.00009903307,0.0000049832324,0.000017886037,0.0000041643057,0.0005068307],"genre_scores_gemma":[0.0016558527,0.9975068,0.0002051028,0.0002001356,0.00010730851,0.000008720389,0.000034477933,0.000001254421,0.0002803976],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998901,0.000024578178,0.00001636412,0.000021288073,0.000032659285,0.000015085314],"domain_scores_gemma":[0.9997546,0.0001408028,0.00003592377,0.0000072637495,0.000042430074,0.000019050427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060025515,0.0005160971,0.0010200066,0.0009781749,0.00012339729,0.0007336904,0.00060335733,0.00084286125,0.002919243],"category_scores_gemma":[0.0006166615,0.000117039366,0.0005716515,0.00068178127,0.00029278078,0.0007102787,0.00037139768,0.0012046582,0.000918401],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018785425,0.000093418595,0.00016075,0.022191,0.00015092267,0.00012785807,0.000030002666,0.00022728393,0.0032403453,0.002959679,0.008316092,0.96231484],"study_design_scores_gemma":[0.00014252814,0.0010210921,0.0029569168,0.011656901,0.00065046526,0.0019241757,0.0001022484,0.0002374426,0.002930335,0.0032416398,0.9750948,0.00004144341],"about_ca_topic_score_codex":0.00053723436,"about_ca_topic_score_gemma":0.0010512122,"teacher_disagreement_score":0.002919243,"about_ca_system_score_codex":0.00036952112,"about_ca_system_score_gemma":0.00069994625,"threshold_uncertainty_score":0.009765863},"labels":[],"label_agreement":null},{"id":"W3083596255","doi":"10.1080/19490976.2020.1810530","title":"Metabolite profiling reveals the interaction of chitin-glucan with the gut microbiota","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Fonds De La Recherche Scientifique - FNRS; Joint Programming Initiative A healthy diet for a healthy life; Université Catholique de Louvain","keywords":"Gut flora; Roseburia; Biology; Eubacterium; Feces; Butyrate; Prebiotic; Dysbiosis; Ruminococcus; Microbiology; Physiology; Food science; Biochemistry; Fermentation; Lactobacillus; Bacteria; Genetics","score_opus":0.013282971797031537,"score_gpt":0.25053709114461375,"score_spread":0.23725411934758223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3083596255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98792136,0.005115699,0.0033890589,0.0000993037,0.000022369037,0.00003908293,0.0019479478,0.00006674353,0.0013985136],"genre_scores_gemma":[0.98789537,0.002379587,0.005732385,0.00014768838,0.000014693948,0.000042801752,0.0014434569,0.000026783784,0.0023171278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983585,0.0000363323,0.000008627374,0.00004574369,0.00005081404,0.000022674676],"domain_scores_gemma":[0.99988437,0.000014980972,0.000041203904,0.000010045633,0.000027211738,0.000022194308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016751564,0.0004342236,0.00029967603,0.0005819263,0.00016054428,0.0003703536,0.000075345,0.00024855195,0.0009888079],"category_scores_gemma":[0.00018909977,0.00014326192,0.00027773317,0.0005764618,0.00013132926,0.00016362424,0.00024510152,0.0003201838,0.00019434579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064990524,0.000035715446,0.007993415,0.00013393312,0.00006115261,0.00005027567,0.00004866114,0.000055848886,0.98087907,0.000027772701,0.00007692973,0.00998739],"study_design_scores_gemma":[0.000041870655,0.0017577925,0.59735954,0.00009322958,0.0003234545,0.0005314613,0.000314433,0.0012850116,0.39260375,0.00026584385,0.0053805765,0.0000429723],"about_ca_topic_score_codex":0.0010790239,"about_ca_topic_score_gemma":0.0018869926,"teacher_disagreement_score":0.0010790239,"about_ca_system_score_codex":0.00012766114,"about_ca_system_score_gemma":0.0001993931,"threshold_uncertainty_score":0.003307879},"labels":[],"label_agreement":null},{"id":"W3093296539","doi":"10.1080/19490976.2020.1830694","title":"Characterization of the intestinal microbiota during Citrobacter rodentium infection in a mouse model of infection-triggered Parkinson’s disease","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Canadian Institutes of Health Research; Kenneth Rainin Foundation","keywords":"Citrobacter rodentium; Biology; Citrobacter; Gut flora; Disease; Microbiology; Pathogen; PINK1; Parkinson's disease; Gut–brain axis; Feces; Immunology; Microbiome; Enterobacteriaceae; Pathology; Gene; Genetics; Escherichia coli; Medicine","score_opus":0.010319602741002996,"score_gpt":0.2146245134937536,"score_spread":0.20430491075275062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093296539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911582,0.0016425374,0.0032692826,0.0002578175,0.00006537761,0.00006581482,0.001697503,0.00012147929,0.0017219983],"genre_scores_gemma":[0.98746115,0.0014073512,0.004785115,0.00021622048,0.00001601856,0.00012173553,0.0020950662,0.000082942264,0.0038144293],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999777,0.000028116487,0.000021775379,0.000068089124,0.00004418748,0.00006074238],"domain_scores_gemma":[0.999703,0.000014038679,0.000111017565,0.000018028151,0.000026973537,0.00012693314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019513883,0.0005669711,0.00027155277,0.0006685998,0.0002512117,0.0003450247,0.00019122973,0.0005669546,0.00090908585],"category_scores_gemma":[0.00013274148,0.00030300344,0.00037319495,0.000261348,0.00040932646,0.0003708353,0.00024049652,0.0010289772,0.00026172103],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035151164,0.00003132078,0.00040334134,0.000019891484,0.000005365507,0.000069808935,0.000020491187,0.000015959433,0.9984995,0.000050875162,0.000028367296,0.0005036437],"study_design_scores_gemma":[0.00006634201,0.0011035341,0.059290763,0.000031753836,0.0000775968,0.0014023088,0.0002729171,0.0007326319,0.9337878,0.00017098026,0.0030436723,0.000019756664],"about_ca_topic_score_codex":0.0010766509,"about_ca_topic_score_gemma":0.0018582914,"teacher_disagreement_score":0.0010766509,"about_ca_system_score_codex":0.00032419406,"about_ca_system_score_gemma":0.00022064109,"threshold_uncertainty_score":0.0030412078},"labels":[],"label_agreement":null},{"id":"W3110526712","doi":"10.1080/19490976.2020.1847976","title":"Ulcerative Colitis-associated E. coli pathobionts potentiate colitis in susceptible hosts","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada; Agence Nationale de la Recherche; CH.I.L.D. Foundation; BC Children's Hospital","keywords":"Colitis; Ulcerative colitis; Microbiology; Biology; Dysbiosis; Immunology; Inflammation; Bacterial adhesin; Inflammatory bowel disease; Strain (injury); Irritable bowel syndrome; Escherichia coli; Gene; Gut flora; Medicine; Disease; Pathology; Gastroenterology; Genetics","score_opus":0.011564244903623538,"score_gpt":0.24046071630389249,"score_spread":0.22889647140026895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110526712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99495715,0.0012290017,0.0008589241,0.00020907256,0.000062821084,0.000038335274,0.00023860515,0.00010937713,0.002296696],"genre_scores_gemma":[0.9943023,0.0012306977,0.0015895866,0.00015684258,0.000034256343,0.000035450834,0.00029573723,0.000026448388,0.0023287516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997564,0.00006380055,0.000020145952,0.000034290435,0.00004999141,0.00007543893],"domain_scores_gemma":[0.99969816,0.000023681181,0.000082999126,0.000023916378,0.000020352269,0.00015097925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014800589,0.0005520912,0.000392196,0.00040936915,0.00015756031,0.0003006499,0.00012517281,0.00035904214,0.001972024],"category_scores_gemma":[0.00014442297,0.00016571881,0.00030399012,0.00018597822,0.00027546711,0.00024711032,0.00031553136,0.0011089345,0.00036712326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053220143,0.00018191585,0.0005440688,0.00005204273,0.0000066589914,0.00008618498,0.000014233091,0.00003529483,0.99654216,0.000071310445,0.000072238814,0.0018615929],"study_design_scores_gemma":[0.00012021452,0.0069549764,0.041943844,0.00004678768,0.00007878773,0.0011696805,0.000101166996,0.0007577827,0.9439736,0.00014076059,0.0046984768,0.000013978223],"about_ca_topic_score_codex":0.00025471603,"about_ca_topic_score_gemma":0.000464004,"teacher_disagreement_score":0.001972024,"about_ca_system_score_codex":0.00012620316,"about_ca_system_score_gemma":0.00015407015,"threshold_uncertainty_score":0.006597042},"labels":[],"label_agreement":null},{"id":"W3114097737","doi":"10.1080/19490976.2020.1862027","title":"Changes in IgA-targeted microbiota following fecal transplantation for recurrent Clostridioides difficile infection","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Medical Research Council; National Institute for Health and Care Research","keywords":"Biology; Immunoglobulin A; Immunology; Firmicutes; Microbiome; Feces; Gut flora; Immune system; Microbiology; Transplantation; Fecal bacteriotherapy; Dysbiosis; Immunoglobulin G; Bacteria; Antibiotics; Clostridium difficile; Genetics; Medicine; Internal medicine","score_opus":0.030824030340127474,"score_gpt":0.2950056462968514,"score_spread":0.2641816159567239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3114097737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99944764,0.00015659706,0.00015565501,0.000016797294,0.0000057408956,0.000004414262,0.000050622682,0.000008978185,0.00015360129],"genre_scores_gemma":[0.9992956,0.00009436403,0.0002084803,0.00003912349,0.0000042848174,0.000006329621,0.00015003317,0.0000058492606,0.00019585957],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998166,0.000023407521,0.000012529167,0.00004279252,0.00004031172,0.000064480635],"domain_scores_gemma":[0.9997044,0.000029623436,0.00010585316,0.000014831329,0.00003200971,0.00011321285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022450413,0.00022899195,0.0005046497,0.00034327348,0.00038811457,0.0006216985,0.00012710714,0.00034151363,0.00089525135],"category_scores_gemma":[0.0005123968,0.00012616826,0.00022385988,0.00025773695,0.00025163696,0.0002065611,0.00029827535,0.00048300138,0.00018366931],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00506355,0.00033971143,0.32346717,0.000124582,0.000108462445,0.0022264442,0.00084114156,0.00038105485,0.63354045,0.00008316849,0.0004228983,0.033401426],"study_design_scores_gemma":[0.00002369797,0.0018248924,0.95729995,0.000022508733,0.00009610914,0.002549701,0.000905472,0.0009905049,0.03513218,0.00006757036,0.001065509,0.000021976],"about_ca_topic_score_codex":0.0009814771,"about_ca_topic_score_gemma":0.0011455701,"teacher_disagreement_score":0.0009814771,"about_ca_system_score_codex":0.00030983944,"about_ca_system_score_gemma":0.00021113796,"threshold_uncertainty_score":0.0029949546},"labels":[],"label_agreement":null},{"id":"W3115118069","doi":"10.1080/19490976.2020.1857513","title":"Maternal consumption of artificially sweetened beverages during pregnancy is associated with infant gut microbiota and metabolic modifications and increased infant body mass index","year":2020,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; BC Children's Hospital; Hospital for Sick Children; University of British Columbia; University of Manitoba; Alberta Children's Hospital; University of Alberta; University of Calgary; McMaster University; Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Biology; Gut flora; Physiology; Body mass index; Pregnancy; Urine; Microbiome; Cohort; Cohort study; Gestation; Internal medicine; Medicine; Immunology; Endocrinology; Bioinformatics","score_opus":0.011242254387997468,"score_gpt":0.22890749947896605,"score_spread":0.21766524509096857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3115118069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96110654,0.0033155733,0.0010904121,0.00039657627,0.00006157865,0.000025687335,0.031937875,0.00009312981,0.0019727403],"genre_scores_gemma":[0.974956,0.0011935587,0.0014089575,0.00017073548,0.000027960934,0.00007486888,0.019755013,0.00006854118,0.0023443312],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950814,0.000114432085,0.00003957002,0.00017762608,0.00006278032,0.00009747067],"domain_scores_gemma":[0.999172,0.00015976041,0.00027885946,0.00013173757,0.00012676885,0.00013094106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005664615,0.00063942355,0.00059705763,0.00048817138,0.00044915124,0.00058020366,0.00044525237,0.00047627182,0.0062759453],"category_scores_gemma":[0.0023615868,0.00026216134,0.0012817131,0.0010243044,0.00016707457,0.00030920588,0.0011447442,0.0006805829,0.00085392804],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013917357,0.000033299148,0.9771945,0.00034233643,0.0009331094,0.00021090715,0.00027048288,0.00022223483,0.0030395347,0.00012499793,0.0032604286,0.012976333],"study_design_scores_gemma":[0.000010452828,0.0000992135,0.99529004,0.000074385614,0.00029453795,0.00031903357,0.00022063976,0.00029316815,0.0003546183,0.000104022656,0.002928006,0.000011934783],"about_ca_topic_score_codex":0.018939285,"about_ca_topic_score_gemma":0.022148257,"teacher_disagreement_score":0.018939285,"about_ca_system_score_codex":0.00030235416,"about_ca_system_score_gemma":0.00061557716,"threshold_uncertainty_score":0.037658095},"labels":[],"label_agreement":null},{"id":"W3123929592","doi":"10.1080/19490976.2020.1862028","title":"Noninvasive monitoring of fibre fermentation in healthy volunteers by analyzing breath volatile metabolites: lessons from the FiberTAG intervention study","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Advanced Chemical Sensor Technologies","field":"Engineering","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Walloon excellence in life sciences and biotechnology; Fonds Baillet Latour; Joint Programming Initiative A healthy diet for a healthy life; Service Public de Wallonie; Fonds De La Recherche Scientifique - FNRS; Bundesministerium für Bildung und Forschung; Université Catholique de Louvain","keywords":"Fermentation; Food science; Ingestion; Maltodextrin; Biology; Butyrate; Metabolome; Short-chain fatty acid; Metabolomics; Metabolite; Chemistry; Biochemistry; Chromatography; Bioinformatics","score_opus":0.013374474433802404,"score_gpt":0.2784947811953069,"score_spread":0.2651203067615045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3123929592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98935246,0.0052751917,0.0036015185,0.0004372685,0.00010373327,0.00025214627,0.00021240805,0.000042814056,0.00072239566],"genre_scores_gemma":[0.98938483,0.0027293712,0.005268733,0.0007357732,0.0001401997,0.00030729332,0.00033640148,0.000023949822,0.0010734109],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996177,0.00019616015,0.0000143662055,0.00007015202,0.000058970967,0.000042609972],"domain_scores_gemma":[0.9996598,0.00008199569,0.00005853751,0.000042460295,0.000072060335,0.00008517872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012225372,0.00069829926,0.00068285613,0.00017739752,0.00022899763,0.000358862,0.00018940942,0.00080216,0.0007175544],"category_scores_gemma":[0.0008829454,0.00021391366,0.00027355208,0.00015716568,0.00040823396,0.0003350523,0.0003882554,0.0005558888,0.00019800948],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.07576969,0.0091810385,0.18043053,0.0013064127,0.0014557015,0.0008312725,0.0011608406,0.000401184,0.53449035,0.00040280525,0.0019285805,0.19264162],"study_design_scores_gemma":[0.0026348874,0.1553911,0.7658288,0.00024081199,0.0011383694,0.0011579741,0.0010182827,0.001917062,0.055424914,0.00076908636,0.01437271,0.00010611681],"about_ca_topic_score_codex":0.00055407465,"about_ca_topic_score_gemma":0.0010539066,"teacher_disagreement_score":0.0012225372,"about_ca_system_score_codex":0.00020993673,"about_ca_system_score_gemma":0.00030845334,"threshold_uncertainty_score":0.0064654946},"labels":[],"label_agreement":null},{"id":"W3127337308","doi":"10.1080/19490976.2021.1875797","title":"Early life environmental exposures have a minor impact on the gut ecosystem following a natural birth","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia, Okanagan Campus; University of British Columbia; Okanagan College","funders":"Natural Sciences and Engineering Research Council of Canada; Crohn's and Colitis Canada","keywords":"Biology; Gut flora; Microbiome; Immunity; Weaning; Immunology; Immune system; Physiology; Disease; Ecology; Environmental health; Medicine; Internal medicine; Bioinformatics; Animal science","score_opus":0.006634175367515694,"score_gpt":0.23123540592298078,"score_spread":0.22460123055546508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127337308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813557,0.0003890229,0.0008221062,0.000036443114,0.000010831077,0.000011484782,0.00018159297,0.000018543726,0.0003944757],"genre_scores_gemma":[0.9972025,0.00047301472,0.0012300455,0.000064087966,0.000005455083,0.000037553265,0.0002284056,0.000009142883,0.0007497767],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99983275,0.000036624024,0.000007146336,0.000049043196,0.000036588455,0.000037840437],"domain_scores_gemma":[0.9997298,0.00003465612,0.00008257218,0.000029290057,0.000024677101,0.00009900217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016702854,0.0002412956,0.00027706724,0.00015464447,0.00016308001,0.00036773048,0.00018232975,0.00028895968,0.00099591],"category_scores_gemma":[0.00033543503,0.00011932405,0.0002334506,0.000096368174,0.00033626187,0.00016561076,0.00035402217,0.00053146126,0.000172366],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016172945,0.00032428064,0.05983266,0.00012965876,0.000070075715,0.00040254422,0.00023574464,0.00031094026,0.9270556,0.00017603497,0.000104399565,0.009740803],"study_design_scores_gemma":[0.00002993004,0.006389092,0.79493046,0.000056653553,0.00011703175,0.0007552442,0.0008736136,0.0009451909,0.19296734,0.00041091198,0.0024902509,0.00003420361],"about_ca_topic_score_codex":0.0006409034,"about_ca_topic_score_gemma":0.0013825715,"teacher_disagreement_score":0.00099591,"about_ca_system_score_codex":0.00023065951,"about_ca_system_score_gemma":0.00024628895,"threshold_uncertainty_score":0.0033316612},"labels":[],"label_agreement":null},{"id":"W3133503587","doi":"10.1080/19490976.2020.1870402","title":"Association between antibiotics and gut microbiome dysbiosis in children: systematic review and meta-analysis","year":2021,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute for Health and Care Research","keywords":"Microbiome; Dysbiosis; Biology; Meta-analysis; Metagenomics; Gut flora; Randomized controlled trial; Medicine; Immunology; Internal medicine; Bioinformatics; Genetics","score_opus":0.030411023890326398,"score_gpt":0.32262974531250027,"score_spread":0.29221872142217387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3133503587","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0040360093,0.9942741,0.00038780365,0.000120496145,0.00009340891,0.0002518296,0.0006446109,0.000021634529,0.00017008602],"genre_scores_gemma":[0.12019972,0.87418133,0.0023454584,0.0005542973,0.00017254631,0.0012335804,0.0009915868,0.000028500335,0.00029300438],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99139386,0.0038710514,0.0025569084,0.00092631456,0.0009396774,0.000312131],"domain_scores_gemma":[0.9821454,0.0128772985,0.0028642854,0.0005360161,0.0013427042,0.00023433608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011061124,0.002595228,0.020138146,0.0071154875,0.00060998567,0.0030965141,0.0021258348,0.0018938592,0.0035963664],"category_scores_gemma":[0.027013725,0.0016199644,0.036004685,0.009652628,0.0006276515,0.001687942,0.001708714,0.0017490167,0.00031240936],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010031865,0.000019653118,0.003978808,0.46050808,0.52512187,0.0001383889,0.000068573296,0.00046961755,0.00016730101,0.00009743628,0.00054253574,0.007884482],"study_design_scores_gemma":[0.00032103524,0.00015071206,0.0044544884,0.03806033,0.9547101,0.0001295993,0.00004791362,0.00017610718,0.00010662165,0.000118805256,0.0017003637,0.000023873734],"about_ca_topic_score_codex":0.009958767,"about_ca_topic_score_gemma":0.020437898,"teacher_disagreement_score":0.020138146,"about_ca_system_score_codex":0.0032195125,"about_ca_system_score_gemma":0.0045291693,"threshold_uncertainty_score":0.05849749},"labels":[],"label_agreement":null},{"id":"W3145654788","doi":"10.1080/19490976.2021.1903289","title":"Translational activity is uncoupled from nucleic acid content in bacterial cells of the human gut microbiota","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill Genome Centre; McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Canadian Institute for Advanced Research","keywords":"Biology; Nucleic acid; Gut flora; Bacteria; Microbial metabolism; Bacterial cell structure; Biochemistry; Microbiology; Genetics","score_opus":0.019320278884715218,"score_gpt":0.24425239450202588,"score_spread":0.22493211561731066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3145654788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9858008,0.0019607304,0.011084219,0.00013551475,0.000025262727,0.000016161996,0.0003010916,0.00007492198,0.0006012662],"genre_scores_gemma":[0.9918914,0.00087720196,0.006089918,0.00010609337,0.000009494448,0.000024913452,0.0004239245,0.00003320946,0.0005439715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996606,0.00008972049,0.000014139284,0.00009501294,0.00009993191,0.000040459403],"domain_scores_gemma":[0.9997731,0.00005004061,0.00008470143,0.000019898705,0.00003789094,0.000034384833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002733589,0.00027260857,0.00028502077,0.00022708146,0.00012985278,0.00038441885,0.000107137166,0.00033175206,0.0005265042],"category_scores_gemma":[0.00043900058,0.00017359991,0.00014992645,0.00019590842,0.00028973183,0.0002081997,0.0003522169,0.00038469434,0.0003020211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000096607546,0.0000067838128,0.0014638484,0.000042048345,0.0000072272496,0.000011852581,0.000021055306,0.000061126804,0.9960884,0.000032540574,0.000017873086,0.0021505249],"study_design_scores_gemma":[0.000008637717,0.00036195034,0.047757655,0.000028990826,0.000046622572,0.00029591573,0.0001385039,0.0032786485,0.9453871,0.00030250015,0.0023732372,0.000020214515],"about_ca_topic_score_codex":0.00042244748,"about_ca_topic_score_gemma":0.00053822435,"teacher_disagreement_score":0.0005265042,"about_ca_system_score_codex":0.00014181173,"about_ca_system_score_gemma":0.00016712125,"threshold_uncertainty_score":0.0017613769},"labels":[],"label_agreement":null},{"id":"W3147713100","doi":"10.1080/19490976.2021.1902705","title":"The Impact of Migration on the Gut Metagenome of South Asian Canadians","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Ottawa; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Metagenomics; Prevotella; Biology; Dominance (genetics); Gut flora; Relative species abundance; Immigration; Microbiome; Abundance (ecology); Ecology; Immunology; Bioinformatics; Geography; Genetics; Gene; Bacteria","score_opus":0.009855088686643263,"score_gpt":0.2544211197881802,"score_spread":0.24456603110153696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3147713100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964366,0.00048108524,0.00012816796,0.00009772512,0.0000078707535,0.00000796967,0.0020289342,0.0000061899736,0.00080544763],"genre_scores_gemma":[0.9958949,0.0004396938,0.00040590382,0.000118046366,0.000003972266,0.000009107343,0.0019442614,0.000009528717,0.0011745597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996958,0.000019676278,0.000009888024,0.00007393118,0.00006636888,0.00013435898],"domain_scores_gemma":[0.9997358,0.000015818929,0.00003805052,0.000011289149,0.00013047816,0.000068644214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023249477,0.00034249225,0.00030858893,0.00079529214,0.0019959072,0.0010054959,0.00026736426,0.00025172695,0.0013320182],"category_scores_gemma":[0.0005080759,0.0001410994,0.00038554613,0.0018291641,0.00043104804,0.00017184923,0.00063182757,0.0003567332,0.0001423269],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000917976,0.000038449634,0.8856901,0.00022380224,0.00034196913,0.0002896788,0.004679615,0.00043974162,0.0838881,0.00030510323,0.0013314439,0.021854106],"study_design_scores_gemma":[0.0000034523669,0.000020503256,0.99544793,0.000016216796,0.000048021066,0.00006875827,0.0020563917,0.00017043418,0.0006351558,0.00002834208,0.0014946057,0.000010162663],"about_ca_topic_score_codex":0.9211289,"about_ca_topic_score_gemma":0.96215045,"teacher_disagreement_score":0.07887107,"about_ca_system_score_codex":0.004529277,"about_ca_system_score_gemma":0.007151864,"threshold_uncertainty_score":0.15867108},"labels":[],"label_agreement":null},{"id":"W3156632136","doi":"10.1080/19490976.2021.1903825","title":"Association of Pre-diagnostic Antibody Responses to Escherichia coli and Bacteroides fragilis Toxin Proteins with Colorectal Cancer in a European Cohort","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Health Services Authority","funders":"Medical Research Council; Eusko Jaurlaritza; European Cooperation in Science and Technology; National Institute for Health and Care Research; Cancer Research UK; World Health Organization","keywords":"Bacteroides fragilis; Biology; Colorectal cancer; Escherichia coli; Microbiology; Toxin; Bacteroides; Antibody; Adenomatous polyposis coli; Cohort; Cancer; Immunology; Bacteria; Genetics; Internal medicine; Gene; Antibiotics; Medicine","score_opus":0.004313909254965519,"score_gpt":0.2520475676751752,"score_spread":0.2477336584202097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3156632136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990729,0.00024119444,0.00012860833,0.000020623893,0.000004814391,0.000006269863,0.00024616535,0.0000041810927,0.0002752143],"genre_scores_gemma":[0.9992969,0.000113329144,0.000080327605,0.00002240612,0.000006253209,0.0000063884972,0.00027644594,0.0000025698018,0.00019537665],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993241,0.00016599178,0.00006182497,0.00026482943,0.00009175849,0.00009152051],"domain_scores_gemma":[0.9987765,0.00019314517,0.0003717457,0.00026944312,0.00013798883,0.00025118762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009708891,0.0003659244,0.0004959159,0.0007070545,0.0004810957,0.0007744657,0.00040629783,0.00066469685,0.0016638222],"category_scores_gemma":[0.0019482927,0.00048430497,0.00068976305,0.0008718432,0.0002997132,0.00035267492,0.00054060796,0.0006418307,0.00024455576],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002967682,0.000032749944,0.9981768,0.000007204191,0.00011604399,0.000105249244,0.00005538845,0.000026520778,0.00053077616,0.000015224956,0.000058500973,0.0005788068],"study_design_scores_gemma":[0.0000053836675,0.000067859335,0.9994418,0.00000248137,0.000042791904,0.00019258972,0.00004478509,0.00007176266,0.000035183883,0.000009981552,0.0000828695,0.0000023517773],"about_ca_topic_score_codex":0.006353535,"about_ca_topic_score_gemma":0.004120844,"teacher_disagreement_score":0.006353535,"about_ca_system_score_codex":0.00021557133,"about_ca_system_score_gemma":0.0002418419,"threshold_uncertainty_score":0.012633085},"labels":[],"label_agreement":null},{"id":"W3163629225","doi":"10.1080/19490976.2021.1918993","title":"Bioactive small molecules produced by the human gut microbiome modulate Vibrio cholerae sessile and planktonic lifestyles","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Biology; Metabolome; Vibrio cholerae; Microbiology; Transcriptome; Bacteroides thetaiotaomicron; Human microbiome; Gut flora; Microbiome; Bacteroides; Phenotype; Motility; Pathogen; Bacteria; Gene; Genetics; Metabolomics; Gene expression; Immunology; Bioinformatics","score_opus":0.009573469745391623,"score_gpt":0.23867062148143856,"score_spread":0.22909715173604694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3163629225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951623,0.002500095,0.0005776408,0.0001309961,0.000039709892,0.000022494383,0.00043615903,0.000017745919,0.0011127258],"genre_scores_gemma":[0.9968004,0.0011307168,0.000364476,0.00011025768,0.00001548536,0.000015422063,0.00032255327,0.0000074542595,0.0012331927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999225,0.000017081742,0.000003821658,0.000016668615,0.000013802356,0.000026111313],"domain_scores_gemma":[0.9999368,0.000014935452,0.000014223307,0.000004168036,0.000010922072,0.000018863228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010294965,0.0002340644,0.0002147079,0.00017947525,0.00011328708,0.0003416831,0.00005017577,0.00019326273,0.0020398137],"category_scores_gemma":[0.00024755084,0.00009387767,0.00016297166,0.00011798309,0.00015325462,0.000101203834,0.00016511802,0.0002002432,0.00028896163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007603044,0.000035533652,0.0028500867,0.000096244745,0.000021354917,0.000044971293,0.000051122028,0.000056745368,0.9906741,0.000032211366,0.00008720782,0.0052901004],"study_design_scores_gemma":[0.000103806684,0.0038249274,0.28375474,0.00006289448,0.00015492129,0.0002681785,0.00086245686,0.00072839484,0.7053839,0.0003040368,0.004526298,0.000025544092],"about_ca_topic_score_codex":0.00087760336,"about_ca_topic_score_gemma":0.0012171384,"teacher_disagreement_score":0.0020398137,"about_ca_system_score_codex":0.00011354263,"about_ca_system_score_gemma":0.00014063908,"threshold_uncertainty_score":0.0068238974},"labels":[],"label_agreement":null},{"id":"W3167593620","doi":"10.1080/19490976.2021.1930875","title":"Bacteroides-dominant gut microbiome of late infancy is associated with enhanced neurodevelopment","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Manitoba; Children's Hospital Research Institute of Manitoba; University of British Columbia; Hospital for Sick Children; Public Health Ontario; BC Children's Hospital; SickKids Foundation; University of Toronto; Child and Family Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Bacteroidetes; Gut flora; Bacteroides; Population; Proteobacteria; Autism; Firmicutes; Microbiome; Physiology; Immunology; Demography; Bioinformatics; Developmental psychology; Genetics; Psychology","score_opus":0.006719322801785784,"score_gpt":0.22706860185800481,"score_spread":0.22034927905621904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3167593620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99631494,0.0017566221,0.0004272632,0.000095618394,0.000021525088,0.0000052408873,0.0003753718,0.000015022749,0.0009883987],"genre_scores_gemma":[0.998353,0.000530573,0.00034644836,0.000030402718,0.000008345221,0.0000075916887,0.00017930105,0.000006051358,0.0005382549],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976367,0.000053164174,0.000015141922,0.000066188564,0.000041666644,0.000060076058],"domain_scores_gemma":[0.99942774,0.00007422463,0.0002552685,0.00002439242,0.00007793473,0.00014033711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043654197,0.00044639793,0.0003189639,0.00046455077,0.00037070276,0.0005690462,0.00015852794,0.00034585377,0.0014314498],"category_scores_gemma":[0.0011904496,0.00018230401,0.00028213815,0.0002827405,0.00018413749,0.00023590648,0.0005583926,0.00052247004,0.00020583365],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001428623,0.00008412033,0.87323457,0.00016626481,0.00016193322,0.0010167656,0.0006952799,0.000092010894,0.10696927,0.00026039052,0.0004890623,0.015401719],"study_design_scores_gemma":[0.000001961955,0.00013455492,0.9954946,0.000033418746,0.000038995422,0.0007217347,0.00023785845,0.000086607666,0.0025804532,0.00008551568,0.0005778122,0.000006431794],"about_ca_topic_score_codex":0.0035667198,"about_ca_topic_score_gemma":0.005601161,"teacher_disagreement_score":0.0035667198,"about_ca_system_score_codex":0.0002844656,"about_ca_system_score_gemma":0.00045310517,"threshold_uncertainty_score":0.00709188},"labels":[],"label_agreement":null},{"id":"W3183827992","doi":"10.1080/19490976.2021.1949097","title":"Enzymatically synthesized exopolysaccharide of a probiotic strain Leuconostoc mesenteroides NTM048 shows adjuvant activity to promote IgA antibody responses","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Carbohydrate Chemistry and Synthesis","field":"Chemistry","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"ASTER","funders":"Japan Agency for Medical Research and Development; Institute for Fermentation, Osaka","keywords":"Leuconostoc mesenteroides; Glucan; Ovalbumin; Recombinant DNA; Biochemistry; Biology; Polysaccharide; Microbiology; Glycoside hydrolase; Escherichia coli; Enzyme; Antigen; Chemistry; Bacteria; Lactic acid; Gene","score_opus":0.01618731980384715,"score_gpt":0.267200116151239,"score_spread":0.2510127963473919,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3183827992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973291,0.00025538704,0.0014495876,0.000033827557,0.000016909627,0.0000184383,0.00023498431,0.000025363765,0.0006363786],"genre_scores_gemma":[0.9929288,0.00021756455,0.0044389386,0.000028404937,0.000005034142,0.000017527502,0.0009651271,0.000014906412,0.0013836605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99994063,0.000011913191,0.0000065349727,0.000009628312,0.000016416765,0.000014835711],"domain_scores_gemma":[0.99994195,0.0000066971093,0.000021985252,0.000006394426,0.0000092809005,0.0000137060815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095788506,0.0004232589,0.00014596219,0.00011900725,0.000062694715,0.00011289175,0.000113448485,0.000174747,0.00061883935],"category_scores_gemma":[0.000119743505,0.00006656826,0.00027658266,0.00013889614,0.0000894096,0.000110339286,0.00014340953,0.00020513478,0.0002211771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043741158,0.000011194495,0.00011189452,0.000014655142,0.000001664059,0.000018589635,0.0000024098508,0.000024916852,0.99922204,0.000008332381,0.000007213888,0.00053342496],"study_design_scores_gemma":[0.000007120792,0.00032228947,0.0024530995,0.000004207253,0.000008239272,0.00014412482,0.000011194088,0.00019909133,0.9960366,0.00000859364,0.00080293434,0.0000025077775],"about_ca_topic_score_codex":0.00046625236,"about_ca_topic_score_gemma":0.00067333906,"teacher_disagreement_score":0.00061883935,"about_ca_system_score_codex":0.00017101165,"about_ca_system_score_gemma":0.00014192372,"threshold_uncertainty_score":0.0020702481},"labels":[],"label_agreement":null},{"id":"W3184068104","doi":"10.1080/19490976.2021.1926842","title":"Resistant starch, microbiome, and precision modulation","year":2021,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Food composition and properties","field":"Nursing","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"W. Garfield Weston Foundation; Ontario Ministry of Economic Development and Innovation","keywords":"Microbiome; Resistant starch; Biology; Gut microbiome; Starch; Phenotype; Biotechnology; Computational biology; Bioinformatics; Food science; Genetics; Gene","score_opus":0.046785959371412215,"score_gpt":0.31324054715130156,"score_spread":0.26645458777988934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3184068104","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020842445,0.9985631,0.0001016426,0.00028391392,0.00014063205,0.0000029340606,0.000012054615,0.0000040523682,0.00068321236],"genre_scores_gemma":[0.002631255,0.996212,0.00019545566,0.00022993589,0.00013751736,0.000008457953,0.000022070068,0.0000015655327,0.0005618185],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997358,0.00007547098,0.000033290733,0.000044146655,0.00008316071,0.000028144137],"domain_scores_gemma":[0.9996737,0.0002002531,0.000041887113,0.000011830881,0.00005195515,0.000020377116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056895975,0.00055777613,0.0009770859,0.0013914965,0.00021665082,0.0011921524,0.00042055358,0.0011077009,0.003170132],"category_scores_gemma":[0.00119914,0.00015572898,0.0006137985,0.001010843,0.0005208538,0.0009547012,0.00068063353,0.0011856129,0.00069401145],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014481062,0.000089998684,0.0004700042,0.04076094,0.0002178605,0.0002457101,0.00019866035,0.0002887532,0.0029698887,0.012215934,0.018671261,0.9237262],"study_design_scores_gemma":[0.000026080967,0.00022557327,0.003050941,0.015892198,0.00026327107,0.0019339067,0.00022254123,0.00014925387,0.0010911882,0.00856619,0.968548,0.00003089206],"about_ca_topic_score_codex":0.0011766449,"about_ca_topic_score_gemma":0.0015492818,"teacher_disagreement_score":0.003170132,"about_ca_system_score_codex":0.00047951107,"about_ca_system_score_gemma":0.000939827,"threshold_uncertainty_score":0.010605156},"labels":[],"label_agreement":null},{"id":"W3210049562","doi":"10.1080/19490976.2021.1988836","title":"Fungal lysozyme leverages the gut microbiota to curb DSS-induced colitis","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Sentinelle Nord, Université Laval; H2020 European Research Council; Natural Sciences and Engineering Research Council of Canada; Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval; Canadian Institutes of Health Research; Université de Paris; H. Lundbeck A/S; Canada First Research Excellence Fund; Novo Nordisk; Institut National de la Santé et de la Recherche Médicale; Lundbeckfonden; Horizon 2020 Framework Programme; Novo Nordisk Fonden; Agence Nationale de la Recherche; Deutsche Forschungsgemeinschaft; European Commission; Fresenius Kabi; Crohn's and Colitis Foundation; Novozymes; Kenneth Rainin Foundation","keywords":"Biology; Colitis; Lysozyme; Gut flora; Inflammatory bowel disease; Microbiology; Immunology; Disease; Computational biology; Genetics; Internal medicine","score_opus":0.014005076381174125,"score_gpt":0.2659739966416054,"score_spread":0.2519689202604313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210049562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.981143,0.0077742715,0.005893699,0.00050247804,0.00012338204,0.00007530514,0.0009523966,0.0004947461,0.0030406737],"genre_scores_gemma":[0.98548156,0.003982639,0.0054986244,0.00025564025,0.00003588556,0.000063096064,0.0010146237,0.000059887436,0.0036080722],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983895,0.000022989821,0.000011058128,0.0000315437,0.000053219464,0.00004207437],"domain_scores_gemma":[0.9999025,0.000008287769,0.000034274555,0.000008330449,0.000013520183,0.000033114517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016182964,0.00036606172,0.000424061,0.00039136366,0.00014336727,0.00050617784,0.00015147231,0.0003060096,0.0010181003],"category_scores_gemma":[0.00013192356,0.00010217175,0.00031866753,0.00022500256,0.00019684389,0.00024636014,0.00030574948,0.0009179093,0.00027433853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023637555,0.00010063181,0.0004692052,0.00014401278,0.000013572655,0.000049347156,0.000017500783,0.00011132799,0.9922666,0.00007058468,0.00014864137,0.0063722176],"study_design_scores_gemma":[0.000056195273,0.0024798678,0.023166608,0.000093369075,0.00009908112,0.00042524052,0.00011421211,0.0017750176,0.9568169,0.00022590008,0.014726652,0.000020899824],"about_ca_topic_score_codex":0.00030138402,"about_ca_topic_score_gemma":0.00073902623,"teacher_disagreement_score":0.0010181003,"about_ca_system_score_codex":0.00014672703,"about_ca_system_score_gemma":0.0002680805,"threshold_uncertainty_score":0.0034059286},"labels":[],"label_agreement":null},{"id":"W3211543068","doi":"10.1080/19490976.2021.1993583","title":"Bacterial membrane vesicles and phages in blood after consumption of Lacticaseibacillus rhamnosus JB-1","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Natural Sciences and Engineering Research Council of Canada; W. Garfield Weston Foundation","keywords":"Biology; Bacteria; Microbiology; Immune system; Extracellular vesicle; Lipoteichoic acid; Lactobacillus rhamnosus; Vesicle; Cell biology; Innate immune system; Microvesicles; Bacterial outer membrane; Lipopolysaccharide; TLR2; Immunity; Immunology; Escherichia coli; Probiotic; Membrane; Biochemistry; Staphylococcus aureus","score_opus":0.010247458284371326,"score_gpt":0.22984467465800876,"score_spread":0.21959721637363744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3211543068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968316,0.0006445001,0.0010342592,0.00007161955,0.000063939304,0.000018673174,0.00028567284,0.000049498685,0.0010001976],"genre_scores_gemma":[0.9915168,0.00032630784,0.0010939972,0.00009537678,0.000016253041,0.00002660555,0.00060212176,0.00002713335,0.006295339],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987113,0.00002092989,0.0000062600134,0.000037327653,0.000024529685,0.000039704126],"domain_scores_gemma":[0.99988794,0.000022622033,0.000031187636,0.000009447125,0.000014725604,0.00003398931],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013904308,0.00022555159,0.00023263892,0.00012798572,0.00009381699,0.00026640523,0.00010614174,0.00033559336,0.0009484596],"category_scores_gemma":[0.00017492453,0.000097691365,0.00015642472,0.00010205373,0.0001978368,0.00021069916,0.00014975527,0.0005536901,0.00024343538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025308626,0.00013264819,0.00038311203,0.00003737274,0.000012568242,0.000081956314,0.00005495145,0.00003504478,0.993711,0.00008779441,0.00009466279,0.0028380144],"study_design_scores_gemma":[0.000031284966,0.0019180017,0.006795365,0.000006771451,0.000030204474,0.00013728286,0.000051981962,0.0004456864,0.9889953,0.000059768594,0.0015196325,0.000008782093],"about_ca_topic_score_codex":0.0009187287,"about_ca_topic_score_gemma":0.0006863739,"teacher_disagreement_score":0.0009484596,"about_ca_system_score_codex":0.00018890569,"about_ca_system_score_gemma":0.00017419252,"threshold_uncertainty_score":0.003172934},"labels":[],"label_agreement":null},{"id":"W3213940119","doi":"10.1080/19490976.2021.1994832","title":"E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Downregulation and upregulation; Transcriptome; Transcriptional regulation; Gene; Microbiology; Escherichia coli; Population; Nitric oxide; Inflammation; Motility; Probiotic; Transcription (linguistics); Gene expression; Bacteria; Immunology; Cell biology; Genetics; Medicine","score_opus":0.008180391419194714,"score_gpt":0.2499039708015712,"score_spread":0.24172357938237649,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3213940119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977586,0.00056085957,0.00047602932,0.00010195977,0.000023503158,0.000010489312,0.00047695273,0.0000335182,0.00055791053],"genre_scores_gemma":[0.99538827,0.00042552815,0.0008402293,0.00015380363,0.000010400906,0.000027895363,0.0007405972,0.00001602345,0.002397282],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984646,0.000021240057,0.000011135432,0.00003641108,0.000036263107,0.000048597092],"domain_scores_gemma":[0.9998492,0.00003671881,0.000032058313,0.0000108468785,0.00002013265,0.00005096507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000114958144,0.00021908391,0.00034857602,0.00025787705,0.00009817417,0.0002763557,0.00007239531,0.00023697621,0.001290348],"category_scores_gemma":[0.00018104483,0.00012951951,0.00020422124,0.00019650614,0.00024905294,0.000111800124,0.00022538236,0.00042418548,0.00017854723],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027163394,0.000018741723,0.0005632768,0.000022796856,0.0000026186635,0.000024600971,0.000015541022,0.000017360027,0.9985322,0.0000070642586,0.00001599604,0.00050821406],"study_design_scores_gemma":[0.000031364423,0.0009628063,0.13365328,0.00002638259,0.000034862638,0.00020120578,0.00029004333,0.0008085771,0.86251813,0.0000837593,0.0013760257,0.000013549882],"about_ca_topic_score_codex":0.0005239177,"about_ca_topic_score_gemma":0.00091623556,"teacher_disagreement_score":0.001290348,"about_ca_system_score_codex":0.00017844392,"about_ca_system_score_gemma":0.00016332619,"threshold_uncertainty_score":0.004316628},"labels":[],"label_agreement":null},{"id":"W3217030677","doi":"10.1080/19490976.2021.2004070","title":"The postnatal window is critical for the development of sex-specific metabolic and gut microbiota outcomes in offspring","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Birth, Development, and Health","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université Laval; Montreal Heart Institute","funders":"Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; H2020 European Research Council; Agence Nationale de la Recherche; Crohn's and Colitis Foundation; Kenneth Rainin Foundation","keywords":"Offspring; Biology; Gut flora; Physiology; Microbiome; Pregnancy; Internal medicine; Bioinformatics; Immunology; Genetics; Medicine","score_opus":0.029781621835858627,"score_gpt":0.30908047701453867,"score_spread":0.27929885517868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3217030677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99053603,0.005522166,0.0016803944,0.0001634501,0.000083571686,0.000017563076,0.00045982274,0.000059533948,0.0014774016],"genre_scores_gemma":[0.9891509,0.004575213,0.0021518879,0.00012795288,0.000033354514,0.00006493557,0.00034905577,0.00004109132,0.003505516],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998783,0.000019662572,0.000007268307,0.00004338832,0.000030277164,0.000021047676],"domain_scores_gemma":[0.99979395,0.000023074888,0.000076963326,0.00002420168,0.000024964398,0.00005687012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016653936,0.00024637,0.00029711708,0.00023205629,0.00021790667,0.00033226295,0.000115631854,0.00023612792,0.0017562406],"category_scores_gemma":[0.00028255378,0.0001240374,0.00016552693,0.0001014272,0.00026122568,0.00020369558,0.00031946084,0.00066879473,0.0002392526],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013615824,0.00020783354,0.030333187,0.00017431843,0.00004582946,0.00070932053,0.00027235702,0.000053109186,0.9261994,0.00049944315,0.0002340893,0.039909635],"study_design_scores_gemma":[0.000021806201,0.0015555748,0.8163532,0.000090088935,0.00012212651,0.0011649473,0.00048799487,0.00019780375,0.17261864,0.0005914437,0.0067705545,0.000025882047],"about_ca_topic_score_codex":0.00043407155,"about_ca_topic_score_gemma":0.0010222241,"teacher_disagreement_score":0.0017562406,"about_ca_system_score_codex":0.0001506938,"about_ca_system_score_gemma":0.00028816983,"threshold_uncertainty_score":0.00587523},"labels":[],"label_agreement":null},{"id":"W37055920","doi":"10.1080/19490976.2023.2190305","title":"EFFECTS OF CHANGES IN WEIGHT, BODY COMPOSITION, FITNESS AND PHYSICAL ACTIVITY ON AORTIC PULSE WAVE VELOCITY IN OVERWEIGHT AN OBESE ADULTS","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Cardiovascular Health and Disease Prevention","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Pulse wave velocity; Cardiorespiratory fitness; Medicine; Arterial stiffness; Overweight; Obesity; Weight loss; Waist; Internal medicine; Physical therapy; Cardiology; Abdominal obesity; Physical fitness; Blood pressure","score_opus":0.0061725314658029945,"score_gpt":0.25649962744969435,"score_spread":0.25032709598389136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W37055920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975189,0.0016696479,0.000060166076,0.00008902134,0.00003501837,0.000006931346,0.00013129454,0.0000037245961,0.00048545477],"genre_scores_gemma":[0.99854785,0.00060245115,0.00009870422,0.000039876766,0.000025688418,0.00001183514,0.0001478327,0.0000017461261,0.00052397256],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998727,0.00005009478,0.0000121394105,0.000027019598,0.00001302719,0.00002502794],"domain_scores_gemma":[0.99966013,0.0001366162,0.00007421194,0.000027116039,0.000023687417,0.000078191995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004563825,0.00026091977,0.0003629378,0.00018393448,0.00020190254,0.00032600906,0.00012205873,0.0004435843,0.001370907],"category_scores_gemma":[0.0012122546,0.00018625027,0.0005772799,0.00022815487,0.000112165944,0.00019058787,0.00022751273,0.0005720938,0.00013866322],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01902554,0.0014369399,0.93958694,0.00024242881,0.0017212488,0.00019492042,0.000357684,0.00021098024,0.0027692446,0.00009346785,0.0004536684,0.033906966],"study_design_scores_gemma":[0.000044588032,0.0012109927,0.9978503,0.000014047049,0.00035846047,0.000033271965,0.00008339831,0.00014673112,0.000072199044,0.00002832688,0.00015431174,0.0000034617615],"about_ca_topic_score_codex":0.0031960253,"about_ca_topic_score_gemma":0.0039459597,"teacher_disagreement_score":0.0031960253,"about_ca_system_score_codex":0.00011542124,"about_ca_system_score_gemma":0.00015080419,"threshold_uncertainty_score":0.0063548684},"labels":[],"label_agreement":null},{"id":"W4213199348","doi":"10.1080/19490976.2022.2038863","title":"The potential of fecal microbiota and amino acids to detect and monitor patients with adenoma","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Colorectal Cancer Screening and Detection","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"Cancer Research UK; Danone; Takeda Science Foundation; Janssen Pharmaceuticals; Mead Johnson Nutrition; Teva Pharmaceutical Industries; Pfizer","keywords":"Adenoma; Colonoscopy; Gastroenterology; Polypectomy; Biology; Colorectal adenoma; Internal medicine; Feces; Medicine; Colorectal cancer; Microbiology; Cancer","score_opus":0.003907862701445225,"score_gpt":0.2027127646869503,"score_spread":0.19880490198550507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213199348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875164,0.0005124457,0.00019393493,0.00003271962,0.000010062578,0.000010422255,0.00013951887,0.000007784291,0.00034133362],"genre_scores_gemma":[0.9994209,0.00009452755,0.0002103485,0.000021744072,0.000009666991,0.0000060908915,0.00013598797,0.0000015295474,0.00009923242],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995565,0.00013050143,0.00005120198,0.00012830726,0.00007814036,0.00005525963],"domain_scores_gemma":[0.9989801,0.00019204052,0.0003993314,0.00008305531,0.00015691643,0.00018854698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006938818,0.00045614978,0.00034201684,0.0008299458,0.00038725158,0.00069591025,0.00021976681,0.00051451824,0.0005775622],"category_scores_gemma":[0.0023456304,0.00023161751,0.00030468008,0.00045541182,0.00019191434,0.0005245676,0.0003706842,0.00041920372,0.00019673599],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003233545,0.000054199765,0.9961423,0.000007108194,0.00003509158,0.000047356676,0.000037422757,0.000030973562,0.0009696187,0.00000639988,0.000039981896,0.0023061277],"study_design_scores_gemma":[0.00000976674,0.00041589988,0.9979582,0.0000062879853,0.00004873437,0.00031559414,0.0000925444,0.00049556926,0.00045571785,0.000027545557,0.00016873024,0.0000054620073],"about_ca_topic_score_codex":0.0012201861,"about_ca_topic_score_gemma":0.0018365827,"teacher_disagreement_score":0.0012201861,"about_ca_system_score_codex":0.0001771803,"about_ca_system_score_gemma":0.00014932721,"threshold_uncertainty_score":0.0036696792},"labels":[],"label_agreement":null},{"id":"W4220806443","doi":"10.1080/19490976.2022.2046452","title":"Acids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; W. Garfield Weston Foundation","keywords":"Lachnospiraceae; Lactobacillaceae; Biology; Bacteria; Clostridiales; Lactobacillus delbrueckii subsp. bulgaricus; Microbiology; Lactobacillus; Bacteroidaceae; Gut flora; Zoology; Clostridiaceae; Biochemistry","score_opus":0.005230280140809916,"score_gpt":0.20808586084253577,"score_spread":0.20285558070172585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220806443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9735329,0.014057757,0.0024227244,0.0004068575,0.00022715845,0.00006225465,0.00082336727,0.00014605261,0.00832097],"genre_scores_gemma":[0.991215,0.0026880489,0.0025000237,0.00012512588,0.00003647616,0.000023904777,0.0007613956,0.00002975877,0.0026201885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995596,0.00014064624,0.000035678848,0.00004030182,0.000117304946,0.00010656177],"domain_scores_gemma":[0.9996176,0.00004816072,0.00009968367,0.000027490762,0.00007541249,0.0001315212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030177677,0.00076206366,0.00043338293,0.00037794656,0.00023844893,0.0006383066,0.00023069428,0.00039582394,0.0020517353],"category_scores_gemma":[0.0004970041,0.00017689705,0.00033358714,0.00028294223,0.00026613814,0.00025804725,0.000565671,0.0004099571,0.0006995165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008586968,0.000079932666,0.0013505943,0.00014285813,0.00002461476,0.00007494249,0.000020092339,0.00011731079,0.9896628,0.00014323671,0.00015039665,0.0073744315],"study_design_scores_gemma":[0.00003729409,0.0013850378,0.010331402,0.00003295275,0.000024359339,0.00015530553,0.00009306498,0.00036371354,0.983071,0.00013907392,0.004354682,0.000012131393],"about_ca_topic_score_codex":0.0018146882,"about_ca_topic_score_gemma":0.00304349,"teacher_disagreement_score":0.0020517353,"about_ca_system_score_codex":0.00023481587,"about_ca_system_score_gemma":0.00054000074,"threshold_uncertainty_score":0.006863773},"labels":[],"label_agreement":null},{"id":"W4220855574","doi":"10.1080/19490976.2022.2050636","title":"Roux-en-Y gastric bypass and sleeve gastrectomy induce substantial and persistent changes in microbial communities and metabolic pathways","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Weight loss; Metabolomics; Firmicutes; Sleeve gastrectomy; Biology; Gut flora; Insulin resistance; Metabolic syndrome; Proteobacteria; Physiology; Gastric bypass; Internal medicine; Gastroenterology; Obesity; Bioinformatics; Endocrinology; Medicine; Bacteria; Immunology","score_opus":0.014217719323281757,"score_gpt":0.21989248993709062,"score_spread":0.20567477061380887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220855574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99775887,0.00082314626,0.00059709063,0.00009936166,0.000049040704,0.00001632544,0.00023629304,0.00002355882,0.00039634426],"genre_scores_gemma":[0.9955467,0.0007627379,0.00089107204,0.00017699701,0.000019253386,0.00007203002,0.00073697115,0.000013591418,0.0017806381],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99978155,0.000035814868,0.00001299569,0.00006518035,0.000040336035,0.00006414865],"domain_scores_gemma":[0.9998586,0.000010689553,0.00004611169,0.000011966207,0.000007303099,0.00006526344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016742844,0.00047537193,0.0004286861,0.0003277386,0.00015315732,0.0003677692,0.00008975685,0.00032284867,0.0015202716],"category_scores_gemma":[0.00016861803,0.0001924549,0.0004358146,0.00024327157,0.0003986493,0.00021506341,0.00044189402,0.0007440786,0.00020552105],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039263503,0.0002862155,0.005907814,0.000091770686,0.000075841584,0.00018379212,0.000040632644,0.0000799602,0.9822311,0.00011292596,0.00012375541,0.006939802],"study_design_scores_gemma":[0.0003055798,0.01435823,0.5974904,0.00004386592,0.00016341665,0.001717308,0.0007110333,0.0011817093,0.379187,0.00057806866,0.0042164605,0.000046908863],"about_ca_topic_score_codex":0.00031888025,"about_ca_topic_score_gemma":0.0009061201,"teacher_disagreement_score":0.0015202716,"about_ca_system_score_codex":0.00020736364,"about_ca_system_score_gemma":0.00033675818,"threshold_uncertainty_score":0.005085826},"labels":[],"label_agreement":null},{"id":"W4224215516","doi":"10.1080/19490976.2022.2057778","title":"A dietary carbohydrate – gut Parasutterella – human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; University of Calgary","funders":"Bundesanstalt für Landwirtschaft und Ernährung; Canadian Institutes of Health Research; Joint Programming Initiative A healthy diet for a healthy life","keywords":"Type 2 diabetes; Biology; Obesity; Weight loss; Diabetes mellitus; Internal medicine; Endocrinology; Akkermansia; Weight gain; Biochemistry; Physiology; Medicine; Body weight","score_opus":0.010996468743530998,"score_gpt":0.23756227703216193,"score_spread":0.22656580828863093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224215516","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9350291,0.033942077,0.0088918,0.002491288,0.00041787437,0.00006672887,0.00088646763,0.00029899186,0.017975641],"genre_scores_gemma":[0.98642737,0.0065017487,0.0032277512,0.00048273162,0.00005089803,0.000025107576,0.00030197887,0.00002040447,0.0029620542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998919,0.000023854926,0.000005215115,0.000026823755,0.00001979407,0.00003243379],"domain_scores_gemma":[0.99991286,0.000006733354,0.000026338272,0.000007399523,0.000011575591,0.000035086414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019409486,0.0003550664,0.00019656912,0.00028147854,0.00032981863,0.0006268522,0.00018165525,0.00043660004,0.0019128368],"category_scores_gemma":[0.00010581149,0.00010332928,0.00027650566,0.00023373032,0.0004683629,0.0003409739,0.0006715094,0.0004965677,0.00025064658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012916202,0.00007710436,0.0091540525,0.00038196304,0.000076079064,0.00041290265,0.0001406022,0.00013210508,0.9495866,0.0048255487,0.0005500045,0.03337155],"study_design_scores_gemma":[0.00020664545,0.002602506,0.40086234,0.00041772245,0.00040368337,0.0054225447,0.0024220678,0.0018833029,0.49440685,0.011427632,0.07981035,0.00013437383],"about_ca_topic_score_codex":0.0015410593,"about_ca_topic_score_gemma":0.0018970491,"teacher_disagreement_score":0.0019128368,"about_ca_system_score_codex":0.00036857402,"about_ca_system_score_gemma":0.00059292867,"threshold_uncertainty_score":0.0063990355},"labels":[],"label_agreement":null},{"id":"W4225660631","doi":"10.1080/19490976.2022.2052699","title":"The barrier and beyond: Roles of intestinal mucus and mucin-type O-glycosylation in resistance and tolerance defense strategies guiding host-microbe symbiosis","year":2022,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Institutes of Health; Crohn's and Colitis Canada","keywords":"Biology; Mucus; Mucin; Microbiology; Gut flora; Host (biology); Microbiome; Symbiosis; Colonisation resistance; Immunology; Bacteria; Ecology; Bioinformatics; Biochemistry; Genetics; Antibiotics","score_opus":0.030010532409149908,"score_gpt":0.2505811241654466,"score_spread":0.22057059175629667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225660631","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009840089,0.99895227,0.00007186541,0.00022311913,0.00016761238,0.0000019420265,0.0000080160835,0.000003089394,0.00047365244],"genre_scores_gemma":[0.00044812536,0.9989133,0.000091187525,0.00011579806,0.00011482856,0.0000024022188,0.00001290147,6.506495e-7,0.00030078672],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99986255,0.000022505303,0.000019976735,0.000022208813,0.00005477362,0.000017816206],"domain_scores_gemma":[0.99978477,0.00009533007,0.000032690063,0.000005095326,0.000053894688,0.00002834236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004489126,0.0007368547,0.0010070158,0.0016550504,0.00023042607,0.0011043551,0.0006415157,0.0011187056,0.0023101643],"category_scores_gemma":[0.0005634495,0.00017855728,0.00039128624,0.001638782,0.0004366968,0.0014860668,0.00073709415,0.0016277172,0.0010318068],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009051121,0.00005778625,0.0002580033,0.019672807,0.00010216766,0.00025903608,0.00009836384,0.00026416476,0.0031142412,0.0056274026,0.023668306,0.9467872],"study_design_scores_gemma":[0.000011018358,0.00010973347,0.0012436927,0.0039160755,0.00009475543,0.00125214,0.0001018084,0.00007872352,0.00048405916,0.0018422178,0.99084806,0.000017671684],"about_ca_topic_score_codex":0.000809845,"about_ca_topic_score_gemma":0.0012715613,"teacher_disagreement_score":0.0023101643,"about_ca_system_score_codex":0.0004377709,"about_ca_system_score_gemma":0.0010071213,"threshold_uncertainty_score":0.007728219},"labels":[],"label_agreement":null},{"id":"W4225815647","doi":"10.1080/19490976.2022.2035658","title":"Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Economic Development and Innovation","keywords":"Biology; Microbiome; Metaproteomics; Prebiotic; Biobank; Feces; Fecal bacteriotherapy; Gut flora; Ex vivo; Glycerol; Microbiology; Metagenomics; In vivo; Food science; Biotechnology; Immunology; Bioinformatics; Biochemistry","score_opus":0.08740359754432715,"score_gpt":0.36478416092570304,"score_spread":0.2773805633813759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225815647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9420967,0.0024257605,0.048985593,0.000213068,0.00011185688,0.0003384912,0.0032638863,0.00022799705,0.0023367077],"genre_scores_gemma":[0.91283685,0.002542343,0.07532505,0.00033419262,0.00006042672,0.00055007223,0.0054433737,0.00011387988,0.002793769],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994655,0.00012487838,0.000048347396,0.00014416491,0.00015032769,0.00006669083],"domain_scores_gemma":[0.9996942,0.00004714247,0.00011061689,0.00004206006,0.00006130796,0.000044739198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006547425,0.0009963993,0.00048103213,0.0005075478,0.00036270745,0.0006471953,0.00028487053,0.00050863676,0.0010685863],"category_scores_gemma":[0.00046424178,0.00017088256,0.0005054344,0.00049140886,0.00029258739,0.0006248737,0.0005902948,0.0005607361,0.00037213412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008496903,0.000045687488,0.0012909757,0.000039007573,0.000011563499,0.000015963778,0.000018132598,0.000054063872,0.99669975,0.000022399416,0.000019247802,0.0016982305],"study_design_scores_gemma":[0.0000073207493,0.00094148994,0.025956009,0.00002571037,0.00007893315,0.00026145342,0.0001059694,0.0010201392,0.9697481,0.000098376026,0.001735086,0.000021468404],"about_ca_topic_score_codex":0.00048211042,"about_ca_topic_score_gemma":0.0011694484,"teacher_disagreement_score":0.0010685863,"about_ca_system_score_codex":0.00020636561,"about_ca_system_score_gemma":0.0003531661,"threshold_uncertainty_score":0.0035747886},"labels":[],"label_agreement":null},{"id":"W4226108223","doi":"10.1080/19490976.2022.2055441","title":"A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Crohn's and Colitis Canada; Canadian Institutes of Health Research; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation of Canada","keywords":"Akkermansia muciniphila; Mucin; Colitis; Biology; Akkermansia; Polyunsaturated fatty acid; Gut flora; Inflammation; Inflammatory bowel disease; Microbiome; Food science; Immunology; Internal medicine; Disease; Medicine; Biochemistry; Fatty acid; Bioinformatics; Lactobacillus","score_opus":0.02066504973396974,"score_gpt":0.24995790857352682,"score_spread":0.22929285883955708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226108223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952361,0.0009651927,0.0015311919,0.00027709344,0.00013609632,0.00008530029,0.0007087405,0.0002230706,0.0008372734],"genre_scores_gemma":[0.9845324,0.0014487338,0.0041427216,0.0004264456,0.000057146113,0.00030938684,0.0014032762,0.00009340103,0.007586448],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99971634,0.0000421251,0.000033112014,0.000076308745,0.000058133075,0.00007388646],"domain_scores_gemma":[0.9995432,0.00002081565,0.00013635866,0.0000460844,0.0000355207,0.00021809364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028478578,0.00082057074,0.00075497635,0.0010967891,0.00033250125,0.00044918974,0.00038783607,0.0009454294,0.0021994861],"category_scores_gemma":[0.00021198114,0.00041892147,0.00068261934,0.00032476732,0.00051361637,0.0005236387,0.00036766406,0.0018336297,0.0004946251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004266977,0.0019432211,0.0006019284,0.00011814117,0.00003990009,0.00015055941,0.000055972072,0.00012980629,0.9896998,0.00013690286,0.0001688034,0.002688046],"study_design_scores_gemma":[0.0011288013,0.03668297,0.019492377,0.00015715549,0.00022068538,0.0010712469,0.00026922606,0.0027941512,0.9302982,0.000468199,0.007346984,0.00006992086],"about_ca_topic_score_codex":0.00075268076,"about_ca_topic_score_gemma":0.0009912192,"teacher_disagreement_score":0.0021994861,"about_ca_system_score_codex":0.0003560557,"about_ca_system_score_gemma":0.00036314924,"threshold_uncertainty_score":0.007358074},"labels":[],"label_agreement":null},{"id":"W4285732346","doi":"10.1080/19490976.2022.2096993","title":"The Mini Colon Model: a benchtop multi-bioreactor system to investigate the gut microbiome","year":2022,"lang":"de","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre","funders":"","keywords":"Bioreactor; Biology; Microbiome; Multiplexing; Metagenomics; Gut flora; Fermentation; Biochemical engineering; Computational biology; Computer science; Bioinformatics; Food science; Engineering; Genetics; Telecommunications","score_opus":0.015185715432907336,"score_gpt":0.2520486673724995,"score_spread":0.23686295193959214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4285732346","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57969004,0.005857724,0.39782536,0.0005893294,0.0005504625,0.0012497467,0.0059834435,0.0038037773,0.004450053],"genre_scores_gemma":[0.5257332,0.0033368042,0.45711428,0.00053047756,0.00014135125,0.0021331336,0.0054164063,0.0002114167,0.0053829546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995171,0.00010042713,0.000024086103,0.0001500547,0.00015616455,0.000052197043],"domain_scores_gemma":[0.99962425,0.000091261034,0.00006956433,0.000065188986,0.000053535165,0.00009622958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062106544,0.0009129816,0.00065312797,0.00044647773,0.00045048626,0.00069010135,0.0007095521,0.0007070926,0.0016888485],"category_scores_gemma":[0.00039059494,0.00031232266,0.00057545025,0.00035096332,0.000337234,0.0005372131,0.0008259514,0.0008291451,0.00081848016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014522084,0.00007546305,0.00083591667,0.0001279225,0.000015594855,0.00003714466,0.000026658503,0.00022067515,0.9936608,0.00011639115,0.00031864527,0.0044194777],"study_design_scores_gemma":[0.000053009637,0.0028137143,0.016188575,0.000055468976,0.00012970237,0.00094211183,0.000095412885,0.010566816,0.9478983,0.00025722792,0.02089073,0.00010890137],"about_ca_topic_score_codex":0.0009847863,"about_ca_topic_score_gemma":0.00226788,"teacher_disagreement_score":0.0016888485,"about_ca_system_score_codex":0.0003247648,"about_ca_system_score_gemma":0.00065746787,"threshold_uncertainty_score":0.0056497455},"labels":[],"label_agreement":null},{"id":"W4288697520","doi":"10.1080/19490976.2022.2105095","title":"Gut bacteria interact directly with colonic mast cells in a humanized mouse model of IBS","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; McMaster University; Population Health Research Institute","funders":"","keywords":"Degranulation; Irritable bowel syndrome; Lamina propria; Biology; Immunology; Gut flora; Mast cell; Histamine; Chemotaxis; TLR4; Pathogenesis; Interleukin 33; Microbiology; Inflammation; Receptor; Cytokine; Medicine; Interleukin; Epithelium; Internal medicine; Pharmacology","score_opus":0.014641076412424552,"score_gpt":0.22741862530951465,"score_spread":0.2127775488970901,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288697520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927307,0.0024984712,0.0022665714,0.00052932923,0.00012989226,0.0001137238,0.0005728192,0.00014573682,0.0010127502],"genre_scores_gemma":[0.98954284,0.0018791521,0.0034338075,0.0002864145,0.000058769863,0.00033141658,0.00069217355,0.00003613476,0.0037393041],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995555,0.00012538214,0.000035088095,0.00009644585,0.00008033322,0.000107264765],"domain_scores_gemma":[0.9998165,0.000017981465,0.000051409814,0.000023131417,0.0000100815905,0.00008096157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005983855,0.0012302874,0.0007205349,0.0010262062,0.00040693098,0.0004469668,0.00038073384,0.0010929889,0.002866747],"category_scores_gemma":[0.0001762692,0.00067642116,0.0008236985,0.00033546347,0.00071266433,0.00063637376,0.0004193018,0.001916761,0.00052119343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025339893,0.0006660773,0.00048925413,0.00009520293,0.00002071098,0.00030966595,0.000048562015,0.00009015713,0.994113,0.000121961886,0.00014638776,0.0013648334],"study_design_scores_gemma":[0.0015509845,0.019850358,0.027853599,0.00010387055,0.00027013235,0.0036249892,0.00041001695,0.0038989978,0.9350924,0.00055879226,0.006739194,0.000046730736],"about_ca_topic_score_codex":0.0004089717,"about_ca_topic_score_gemma":0.00070341886,"teacher_disagreement_score":0.002866747,"about_ca_system_score_codex":0.00041131626,"about_ca_system_score_gemma":0.00030017417,"threshold_uncertainty_score":0.0095902085},"labels":[],"label_agreement":null},{"id":"W4289132392","doi":"10.1080/19490976.2022.2104087","title":"Invariant natural killer T cells minimally influence gut microbiota composition in mice","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"CD1D; Biology; Natural killer T cell; Immunology; Innate immune system; Gut flora; Glycolipid; Immune system; Chemokine; Antigen; Inflammation; Cell biology; Microbiology; T cell","score_opus":0.005452219802953557,"score_gpt":0.20488539739184033,"score_spread":0.1994331775888868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289132392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899962,0.0010124883,0.0032769863,0.00044684386,0.00017570681,0.00015822219,0.001461427,0.00054616417,0.002925951],"genre_scores_gemma":[0.97627604,0.00097327644,0.005107333,0.0004549013,0.000092874274,0.0003551645,0.0017421277,0.00047420475,0.014524046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998904,0.0001495365,0.00013619427,0.00031305643,0.00022499247,0.0002722427],"domain_scores_gemma":[0.9986719,0.00015414924,0.000414676,0.0001539026,0.00006676511,0.0005386395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053400145,0.0013489615,0.00077786733,0.0018532499,0.00044835662,0.0010451453,0.0007730633,0.0011830392,0.0025938125],"category_scores_gemma":[0.0003941493,0.0006784671,0.0007679965,0.00043141906,0.0014479313,0.0008202642,0.0006209527,0.003037818,0.0012799656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015401888,0.00043319754,0.00042041915,0.000054200063,0.00001591494,0.00018580623,0.00006978347,0.00014599587,0.9948462,0.00031810004,0.0001238459,0.0018462534],"study_design_scores_gemma":[0.00047710256,0.002777152,0.0052406713,0.00003991086,0.00006883922,0.00077959354,0.00016386675,0.0016639348,0.9839722,0.00040003483,0.00438804,0.00002875741],"about_ca_topic_score_codex":0.00064085517,"about_ca_topic_score_gemma":0.0009326489,"teacher_disagreement_score":0.0025938125,"about_ca_system_score_codex":0.0007986489,"about_ca_system_score_gemma":0.00059315894,"threshold_uncertainty_score":0.008677185},"labels":[],"label_agreement":null},{"id":"W4290693700","doi":"10.1080/19490976.2022.2108281","title":"A single cell survey of the microbial impacts on the mouse small intestinal epithelium","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; University of Calgary; Mount Sinai Hospital; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Intestinal epithelium; Cell biology; Epithelium; Paneth cell; Crosstalk; Cell; Intestinal mucosa; Transcriptome; Homeostasis; Gut flora; Signal transduction; Immunology; Gene expression; Gene; Genetics; Small intestine; Biochemistry","score_opus":0.02383996122532112,"score_gpt":0.22957897449829376,"score_spread":0.20573901327297264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290693700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9736343,0.0028215023,0.016939085,0.0001281677,0.00006748142,0.00008018135,0.002750211,0.00021863419,0.003360595],"genre_scores_gemma":[0.96527517,0.0027709606,0.019891562,0.00029668663,0.000045954595,0.00023568039,0.0027443268,0.00012134517,0.008618422],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99981004,0.000018945022,0.000012226997,0.00006472814,0.00005684718,0.000037216567],"domain_scores_gemma":[0.99984705,0.000027475631,0.000026586902,0.00001849178,0.000028113789,0.00005220098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020179705,0.00032338192,0.00032660793,0.000755757,0.00023607233,0.00033995855,0.00015436205,0.00045738023,0.0012060726],"category_scores_gemma":[0.000091205926,0.00021087319,0.00029512984,0.0003309983,0.00022410548,0.00022851846,0.00024283891,0.0007344644,0.0005267677],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024950165,0.0000075635944,0.0002523432,0.000012196578,0.0000022419517,0.000013084145,0.00000760348,0.00001739294,0.9992582,0.000020796166,0.0000099582885,0.00037369895],"study_design_scores_gemma":[0.000012487795,0.00036413022,0.02816891,0.000012323042,0.000041406834,0.00022706726,0.0001162039,0.0015906412,0.96713114,0.00012990188,0.0021962982,0.000009505179],"about_ca_topic_score_codex":0.0004499365,"about_ca_topic_score_gemma":0.0011785591,"teacher_disagreement_score":0.0012060726,"about_ca_system_score_codex":0.00014943832,"about_ca_system_score_gemma":0.00011684913,"threshold_uncertainty_score":0.004034698},"labels":[],"label_agreement":null},{"id":"W4296036288","doi":"10.1080/19490976.2022.2120344","title":"Short-term supplementation with ω-3 polyunsaturated fatty acids modulates primarily mucolytic species from the gut luminal mucin niche in a human fermentation system","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Social Sciences and Humanities Research Council of Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Akkermansia muciniphila; Biology; Polyunsaturated fatty acid; Akkermansia; Docosahexaenoic acid; Gut flora; Microbiome; Microbiology; Eicosapentaenoic acid; Mucin; Prebiotic; Mucus; Metabolome; Physiology; Lactobacillus; Food science; Biochemistry; Fatty acid; Fermentation; Ecology; Metabolite; Bioinformatics","score_opus":0.01205490887701995,"score_gpt":0.2516012127121493,"score_spread":0.23954630383512934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4296036288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977387,0.0013609158,0.00028101486,0.00006130479,0.000021528482,0.000013943128,0.00010858945,0.000011102647,0.00040281308],"genre_scores_gemma":[0.9970216,0.00065019197,0.0005541264,0.000055042274,0.000009347575,0.00001875153,0.00023852837,0.000010216657,0.0014422039],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998914,0.000032355765,0.0000063254215,0.000030200536,0.000010390735,0.000029329596],"domain_scores_gemma":[0.9998938,0.000015795316,0.000014330649,0.000014917557,0.0000133390995,0.000047851678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015567908,0.00017222553,0.00024767526,0.00016342947,0.00016362782,0.00038485407,0.00014648645,0.00023754581,0.0017462558],"category_scores_gemma":[0.00021417755,0.00009725107,0.00017217577,0.00010182278,0.00020310021,0.00020372785,0.000301044,0.00034867387,0.0002631791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005101872,0.00012363956,0.00079642667,0.000031110398,0.000014242252,0.000019468836,0.000034480046,0.000018418561,0.99026066,0.000025471145,0.00004874235,0.0035253426],"study_design_scores_gemma":[0.00033169618,0.009966466,0.075392835,0.00007295339,0.00019751403,0.00031367695,0.00058164465,0.0010798721,0.9056352,0.00026675852,0.0061267577,0.00003468402],"about_ca_topic_score_codex":0.001091671,"about_ca_topic_score_gemma":0.0018428338,"teacher_disagreement_score":0.0017462558,"about_ca_system_score_codex":0.00017576417,"about_ca_system_score_gemma":0.00021189748,"threshold_uncertainty_score":0.0058418512},"labels":[],"label_agreement":null},{"id":"W4310056236","doi":"10.1080/19490976.2022.2149047","title":"Diet standardization reduces intra-individual microbiome variation","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Center for Advancing Translational Sciences; Agence Nationale de la Recherche; National Institute of Diabetes and Digestive and Kidney Diseases; Kenneth Rainin Foundation; University of Pennsylvania","keywords":"Biology; Microbiome; Variation (astronomy); Standardization; Gut microbiome; Genetic variation; Computational biology; Genetics; Bioinformatics; Biotechnology; Gene","score_opus":0.00851464939047555,"score_gpt":0.24316679229719,"score_spread":0.23465214290671443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310056236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933509,0.00042037718,0.005228247,0.000063343075,0.000038513914,0.000089585104,0.00023776309,0.00007707407,0.0004943268],"genre_scores_gemma":[0.99330986,0.0002211609,0.0050521847,0.00012433079,0.000018281393,0.00013340374,0.00047720483,0.000051194285,0.00061247265],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990683,0.00032817532,0.00007604004,0.00025671124,0.00017291974,0.00009786611],"domain_scores_gemma":[0.9993179,0.00012230055,0.00020027404,0.00022487307,0.00007810249,0.00005650751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008639366,0.00045701963,0.00066402444,0.00039452183,0.00032046565,0.00052211236,0.0002527423,0.0003292688,0.00091742317],"category_scores_gemma":[0.0013643827,0.0002344537,0.00038512071,0.000417419,0.000538599,0.00026097626,0.0006509769,0.00048418148,0.00013644568],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007494385,0.0011803047,0.028401615,0.00017942023,0.00029849334,0.000072775285,0.00026246335,0.00057577185,0.93339175,0.00025469819,0.00025093436,0.02763734],"study_design_scores_gemma":[0.0002564679,0.011584325,0.62418514,0.00004096149,0.00052509067,0.0002971559,0.00033942872,0.0030006764,0.35383895,0.00071102276,0.00515895,0.00006178533],"about_ca_topic_score_codex":0.001051976,"about_ca_topic_score_gemma":0.0020305647,"teacher_disagreement_score":0.001051976,"about_ca_system_score_codex":0.00028065214,"about_ca_system_score_gemma":0.00042745902,"threshold_uncertainty_score":0.004568994},"labels":[],"label_agreement":null},{"id":"W4310947866","doi":"10.1080/19490976.2022.2152306","title":"Genomic diversity of Helicobacter pylori populations from different regions of the human stomach","year":2022,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Nottingham; National Institute for Health and Care Research; Trent University; Nottingham University Hospitals NHS Trust; Nottingham Trent University","keywords":"Biology; Helicobacter pylori; Genetic diversity; Genetics; Population; Viral quasispecies; Allele; Antrum; Stomach; Evolutionary biology; Genome; Gene","score_opus":0.03414790472610089,"score_gpt":0.2537439265670165,"score_spread":0.21959602184091562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310947866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986029,0.00025334416,0.00044177723,0.000021118949,0.0000014376889,0.000005101334,0.0004952011,0.0000055239007,0.00017353502],"genre_scores_gemma":[0.9974726,0.00014840966,0.0007171227,0.000050786406,0.0000045149795,0.000010126697,0.0014895855,0.0000060766756,0.000100823556],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997944,0.00003864245,0.00001633826,0.00008476909,0.0000352281,0.00003057875],"domain_scores_gemma":[0.9997805,0.0000507701,0.00006933728,0.000026552194,0.000035099107,0.000037764377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024654905,0.00012590783,0.0002815435,0.00048631008,0.00018684666,0.00045638985,0.00010781634,0.00023228693,0.00059982133],"category_scores_gemma":[0.0005537313,0.00012498473,0.00019424593,0.00041818013,0.00023436209,0.00014740646,0.00039666804,0.00021560707,0.000119522185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005644495,0.000046498808,0.7050825,0.00013264938,0.00026603602,0.00030528114,0.0008982271,0.0005852246,0.2699113,0.00018036462,0.00046239368,0.021565106],"study_design_scores_gemma":[0.00001049306,0.00016254255,0.9887057,0.000015316296,0.00006468389,0.0010862348,0.0003075953,0.00074874505,0.0074341972,0.00014216587,0.0013124873,0.000009743536],"about_ca_topic_score_codex":0.0009572611,"about_ca_topic_score_gemma":0.0012866032,"teacher_disagreement_score":0.0009572611,"about_ca_system_score_codex":0.00011894008,"about_ca_system_score_gemma":0.00008563983,"threshold_uncertainty_score":0.00200665},"labels":[],"label_agreement":null},{"id":"W4318754550","doi":"10.1080/19490976.2023.2167171","title":"Candida albicans can foster gut dysbiosis and systemic inflammation during HIV infection","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Canadian Institutes of Health Research","funders":"","keywords":"Candida albicans; Dysbiosis; Biology; Immune system; Immunology; Gut flora; Corpus albicans; Population; Microbiology; Immunity; Host (biology); Human immunodeficiency virus (HIV); Medicine; Genetics","score_opus":0.01024202828742446,"score_gpt":0.24071171724892423,"score_spread":0.23046968896149977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318754550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9382782,0.042132333,0.0009181893,0.0037527096,0.0005196148,0.00008536977,0.00022377561,0.00009554052,0.013994222],"genre_scores_gemma":[0.9877439,0.008602446,0.0006186146,0.00092443964,0.000369961,0.000030211366,0.00012080065,0.000010993817,0.0015785544],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99974996,0.00008198315,0.000012980403,0.000025842104,0.000045472105,0.000083649094],"domain_scores_gemma":[0.9997291,0.000036741127,0.000090075664,0.000017407909,0.000023303022,0.00010331363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036314115,0.0002145927,0.00035624907,0.00027265743,0.00044160345,0.00097082614,0.00014874584,0.0004967923,0.00280753],"category_scores_gemma":[0.0005879559,0.00009448775,0.0002733753,0.00024990735,0.0003983562,0.00037747252,0.00060689246,0.0008797986,0.00028256403],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006336946,0.0011596094,0.22619058,0.0029814767,0.00039294717,0.016598655,0.0026450215,0.00059949525,0.512267,0.007896846,0.017290786,0.20564061],"study_design_scores_gemma":[0.00018485615,0.003766237,0.8405339,0.0014351122,0.00040625272,0.021604111,0.003595791,0.00111678,0.053098124,0.0061044614,0.0680595,0.000094929106],"about_ca_topic_score_codex":0.0005096236,"about_ca_topic_score_gemma":0.0010181051,"teacher_disagreement_score":0.00280753,"about_ca_system_score_codex":0.00025303522,"about_ca_system_score_gemma":0.00032801807,"threshold_uncertainty_score":0.009392142},"labels":[],"label_agreement":null},{"id":"W4319294926","doi":"10.1080/19490976.2023.2172669","title":"The multifaceted virulence of adherent-invasive Escherichia coli","year":2023,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women and Children’s Health Research Institute; University of Alberta","funders":"","keywords":"Biology; Virulence; Escherichia coli; Microbiology; Genetics; Gene","score_opus":0.05029945339847959,"score_gpt":0.34849161155581454,"score_spread":0.29819215815733496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319294926","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002708689,0.99745625,0.00016689915,0.00034872987,0.00021545605,0.000003786434,0.000028257291,0.0000089205905,0.0015007814],"genre_scores_gemma":[0.0007787142,0.9983126,0.00014778462,0.00013010246,0.00008119853,0.0000026393893,0.000027541495,0.0000013234966,0.00051814463],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998789,0.000017849932,0.000014963642,0.000018752366,0.000050578157,0.000018926497],"domain_scores_gemma":[0.9998281,0.00006664381,0.000027490574,0.0000058888927,0.000050298433,0.000021484642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032113976,0.0005753433,0.0007464261,0.0013828883,0.00019187976,0.0009512292,0.00040840247,0.0008145063,0.0026699114],"category_scores_gemma":[0.00041854326,0.00018817221,0.0002966707,0.0012289112,0.00032803434,0.0008767028,0.00054106885,0.00097475684,0.0020923137],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007324588,0.0000408309,0.00020726031,0.015464368,0.00004551646,0.00016113548,0.000042452473,0.00022408388,0.005664764,0.0040265783,0.017935531,0.9561142],"study_design_scores_gemma":[0.0000070075607,0.00009511338,0.000835653,0.0026876887,0.00005569851,0.0008561396,0.000050879506,0.000045205936,0.0014813935,0.001134838,0.9927366,0.000013841693],"about_ca_topic_score_codex":0.00076546735,"about_ca_topic_score_gemma":0.0011192929,"teacher_disagreement_score":0.0026699114,"about_ca_system_score_codex":0.00039004534,"about_ca_system_score_gemma":0.00088473485,"threshold_uncertainty_score":0.008931696},"labels":[],"label_agreement":null},{"id":"W4321003731","doi":"10.1080/19490976.2023.2178797","title":"How longitudinal data can contribute to our understanding of host genetic effects on the gut microbiome","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"National Institute of General Medical Sciences; National Institute on Aging; National Science Foundation","keywords":"Biology; Microbiome; Microbial genetics; Host (biology); Heritability; Evolutionary biology; Population; Genetics; Computational biology; Ecology; Gene","score_opus":0.05703955759315412,"score_gpt":0.29360527048986973,"score_spread":0.2365657128967156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321003731","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17943591,0.046460263,0.60467446,0.11189009,0.009689175,0.0015207427,0.022480717,0.00094400847,0.022904718],"genre_scores_gemma":[0.6045015,0.02013388,0.31883684,0.030193338,0.006378058,0.003925505,0.009570866,0.0005025587,0.005957402],"study_design_codex":"observational","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.9338036,0.055021804,0.0032679702,0.0031959566,0.0037478362,0.00096283614],"domain_scores_gemma":[0.74255896,0.15420769,0.025327003,0.058952484,0.015393671,0.0035602262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.107846335,0.0009939673,0.0019373834,0.0041904156,0.002286292,0.004961977,0.0018662163,0.0024444829,0.0061367857],"category_scores_gemma":[0.24486907,0.0010333792,0.002122658,0.005374324,0.0031840936,0.008861236,0.005623569,0.005178519,0.0011394],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010786174,0.00043787088,0.6599471,0.0031478906,0.007378499,0.0010133595,0.005432325,0.0048139715,0.004162289,0.09283376,0.025852956,0.19390135],"study_design_scores_gemma":[0.00029795046,0.0012482349,0.3868103,0.004927445,0.0046075634,0.0019613048,0.0053068576,0.010149888,0.00331949,0.44932133,0.13122903,0.0008205144],"about_ca_topic_score_codex":0.010656487,"about_ca_topic_score_gemma":0.011593433,"teacher_disagreement_score":0.107846335,"about_ca_system_score_codex":0.0013011668,"about_ca_system_score_gemma":0.0031789837,"threshold_uncertainty_score":0.5703528},"labels":[],"label_agreement":null},{"id":"W4321748423","doi":"10.1080/19490976.2023.2180317","title":"Actively replicating gut bacteria identified by 5-ethynyl-2’-deoxyuridine (EdU) click chemistry and cell sorting","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University Health Centre; Kenneth Rainin Foundation; McGill University","keywords":"Bacteria; Biology; Cell sorting; Click chemistry; Gut flora; Microbiology; Bacterial cell structure; Microbial metabolism; Genetics; Cell; Biochemistry; Chemistry","score_opus":0.008372190839518684,"score_gpt":0.2537403078186857,"score_spread":0.245368116979167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321748423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7667147,0.0029470169,0.21798898,0.00046269727,0.00021775441,0.00042601975,0.0026846805,0.002432756,0.006125527],"genre_scores_gemma":[0.7239004,0.0041013095,0.25601515,0.0005292757,0.000056681998,0.0008625517,0.004762055,0.0005130038,0.009259621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954236,0.00006252345,0.000029774736,0.00012025499,0.00015774647,0.00008739464],"domain_scores_gemma":[0.9995503,0.0001389348,0.000097573924,0.000059165723,0.0000998244,0.000054107226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007624726,0.0006466395,0.0005001547,0.00075420365,0.00040103693,0.0006128162,0.00040079022,0.0008814062,0.0017786777],"category_scores_gemma":[0.00060705503,0.00035038314,0.00041354526,0.0004716289,0.00048338049,0.00042275764,0.0006375074,0.0010020231,0.0012401161],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026655774,0.000009492487,0.0002854329,0.000055248747,0.0000034266322,0.000030109464,0.00002658474,0.00006414421,0.99708253,0.00014514299,0.000085685744,0.0021855503],"study_design_scores_gemma":[0.0000047869917,0.00008792136,0.002242063,0.000013275394,0.000009413429,0.00013290156,0.000029336887,0.002368889,0.9913844,0.000114661554,0.003600436,0.000011799049],"about_ca_topic_score_codex":0.00050155254,"about_ca_topic_score_gemma":0.0012208306,"teacher_disagreement_score":0.0017786777,"about_ca_system_score_codex":0.00029649568,"about_ca_system_score_gemma":0.00027019333,"threshold_uncertainty_score":0.0059503317},"labels":[],"label_agreement":null},{"id":"W4322216951","doi":"10.1080/19490976.2023.2181922","title":"The emerging roles of bacterial proteases in intestinal diseases","year":2023,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Celiac Disease Research and Management","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kingston General Hospital; Queen's University; McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Canada","keywords":"Proteases; Protease; Biology; Irritable bowel syndrome; Disease; Immunogenicity; Microbiology; Immunology; Proteolytic enzymes; Enzyme; Immune system; Biochemistry; Medicine; Internal medicine","score_opus":0.050164395883037574,"score_gpt":0.38032765321133133,"score_spread":0.33016325732829377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322216951","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010737087,0.9987883,0.00008126341,0.00021946961,0.00013776246,0.0000022171828,0.000010497434,0.000005626926,0.0006474375],"genre_scores_gemma":[0.00053262996,0.99879754,0.00011302325,0.00011365946,0.00012709823,0.0000026900716,0.00001566561,7.285584e-7,0.00029692583],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998165,0.00003294253,0.000027223672,0.00002549581,0.0000733151,0.00002467597],"domain_scores_gemma":[0.99972004,0.000115406634,0.000039035283,0.000008182459,0.00008125301,0.000036023084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060806493,0.0007072739,0.0011424968,0.0017668928,0.0002603621,0.0011087159,0.0005526019,0.0009612784,0.0038770959],"category_scores_gemma":[0.00061676494,0.00019669547,0.0004877123,0.0018914669,0.00042836546,0.0012719175,0.0007272578,0.0017761346,0.0018700233],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095346186,0.00006414354,0.00020585077,0.019010803,0.00009445301,0.00024851284,0.00008629917,0.00023292405,0.0027643458,0.004083066,0.020614708,0.9524996],"study_design_scores_gemma":[0.000018689325,0.00010297233,0.00089364825,0.003079105,0.00010054995,0.0012307612,0.00006565981,0.000066609144,0.00043094592,0.0019142524,0.99208367,0.000013162268],"about_ca_topic_score_codex":0.00073343265,"about_ca_topic_score_gemma":0.0011488243,"teacher_disagreement_score":0.0038770959,"about_ca_system_score_codex":0.0004396677,"about_ca_system_score_gemma":0.0009593981,"threshold_uncertainty_score":0.012970209},"labels":[],"label_agreement":null},{"id":"W4322757980","doi":"10.1080/19490976.2023.2183686","title":"Secreted Aeromonas GlcNAc binding protein GbpA stimulates epithelial cell proliferation in the zebrafish intestine","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of General Medical Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health","keywords":"Biology; Microbiology; Zebrafish; Colonization; Intestinal epithelium; Cell biology; Epithelium; Biochemistry; Genetics; Gene","score_opus":0.013256617629932896,"score_gpt":0.25702013059234613,"score_spread":0.24376351296241322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4322757980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652654,0.000556408,0.0006517998,0.000083384315,0.000013616217,0.000020778634,0.0002715065,0.000053173673,0.0018228092],"genre_scores_gemma":[0.993764,0.00043139188,0.00118274,0.000081074766,0.000006679833,0.000046037472,0.00034186605,0.000018013512,0.004128156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999304,0.000006642685,0.000005078873,0.000014210321,0.000019499748,0.000024086483],"domain_scores_gemma":[0.9999343,0.000009852885,0.000013912869,0.0000064893097,0.000008717276,0.000026659098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072276394,0.0002920439,0.00017431797,0.00018163689,0.00013833478,0.00018169075,0.00010580171,0.00019329315,0.0009814444],"category_scores_gemma":[0.00007232714,0.00014235257,0.000266653,0.00007314511,0.00020596734,0.0001256774,0.00024592245,0.00048004047,0.0002748611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015630301,0.0000026306302,0.00007918835,0.0000074963123,5.8199083e-7,0.000011801017,0.0000073630376,0.0000071268364,0.999724,0.000010678027,0.000008498161,0.00012493687],"study_design_scores_gemma":[0.000017319819,0.0003809276,0.026434094,0.000009656089,0.000013239304,0.00012107495,0.00008092643,0.00063510553,0.97037673,0.000033298595,0.001889927,0.000007736881],"about_ca_topic_score_codex":0.0034151007,"about_ca_topic_score_gemma":0.0052977144,"teacher_disagreement_score":0.0034151007,"about_ca_system_score_codex":0.00037582443,"about_ca_system_score_gemma":0.00021507488,"threshold_uncertainty_score":0.006790459},"labels":[],"label_agreement":null},{"id":"W4327902007","doi":"10.1080/19490976.2023.2188874","title":"Gut microbiota modulates visceral sensitivity through calcitonin gene-related peptide (CGRP) production","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Calcitonin gene-related peptide; Biology; Visceral pain; Capsaicin; Endocrinology; Internal medicine; Gut flora; Substance P; Receptor; Neuropeptide; Calcitonin; G protein-coupled receptor; Immunology; Medicine; Nociception","score_opus":0.019234130431126522,"score_gpt":0.26558479370262966,"score_spread":0.24635066327150315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4327902007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961422,0.0023937125,0.00043202256,0.00012372927,0.00002931371,0.000019464816,0.00017249126,0.00002709002,0.00065990735],"genre_scores_gemma":[0.9962567,0.0019208026,0.0006946636,0.00015698506,0.000022784765,0.000040486706,0.0001675179,0.000009482057,0.0007304523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982685,0.000039723844,0.000010993809,0.000031713073,0.00003912145,0.000051659084],"domain_scores_gemma":[0.9998518,0.000014242144,0.00005265688,0.000008636881,0.000014007121,0.000058549314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001187241,0.00035491295,0.00027707673,0.00026269202,0.00011545128,0.00029642106,0.00009927013,0.00032059217,0.0012962222],"category_scores_gemma":[0.00022476263,0.00014629088,0.00028917383,0.00014107962,0.00028242747,0.00022485672,0.0002684767,0.00069691474,0.00015145975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001634548,0.00013432276,0.0030401284,0.0001179979,0.000023329376,0.00015624627,0.0000373523,0.00003859857,0.9900771,0.000037961974,0.00007781192,0.0046245656],"study_design_scores_gemma":[0.00028698775,0.011048683,0.5289522,0.000095250514,0.0002617,0.0015374003,0.00054220716,0.0010552873,0.45235002,0.0003477742,0.0034818042,0.000040665454],"about_ca_topic_score_codex":0.00030960471,"about_ca_topic_score_gemma":0.00049956265,"teacher_disagreement_score":0.0012962222,"about_ca_system_score_codex":0.00017788468,"about_ca_system_score_gemma":0.00014998249,"threshold_uncertainty_score":0.0043362975},"labels":[],"label_agreement":null},{"id":"W4353014995","doi":"10.1080/19490976.2023.2192547","title":"Experimental diets dictate the metabolic benefits of probiotics in obesity","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Novo Nordisk Fonden; Novo Nordisk","keywords":"Probiotic; Biology; Context (archaeology); Lactobacillus paracasei; Gut flora; Obesity; Fatty liver; Lactobacillus reuteri; Food science; Physiology; Endocrinology; Internal medicine; Disease; Bacteria; Medicine; Immunology","score_opus":0.014815411508933314,"score_gpt":0.26555575596254666,"score_spread":0.2507403444536133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4353014995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877702,0.0026833492,0.0038953146,0.0004577091,0.00031977208,0.0004365592,0.0011535973,0.000116304975,0.0031670346],"genre_scores_gemma":[0.97252065,0.0032590753,0.013063351,0.0006263882,0.00012983069,0.002305957,0.0020762768,0.00015241379,0.005866045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888223,0.0002369106,0.00018354355,0.00019408704,0.000289676,0.00021353728],"domain_scores_gemma":[0.9992482,0.00013889124,0.00019204077,0.00010610435,0.000088788714,0.00022595027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062435603,0.00078696787,0.00058645953,0.0006423833,0.0005377472,0.00073222205,0.0005155612,0.0009310836,0.0028976488],"category_scores_gemma":[0.0006794387,0.00054743415,0.00046882342,0.00040786734,0.0009792811,0.00055677886,0.000693236,0.00271855,0.00049109093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005572193,0.0025050153,0.0007929243,0.00016590397,0.00003474927,0.00005853025,0.00006705504,0.00013985593,0.98710644,0.0002696197,0.0001380928,0.0031496915],"study_design_scores_gemma":[0.0007358818,0.020765124,0.019281412,0.00013045117,0.00020902853,0.00024831985,0.00015502071,0.00091498124,0.9508691,0.0004548779,0.006174292,0.0000614694],"about_ca_topic_score_codex":0.00064182456,"about_ca_topic_score_gemma":0.0018165438,"teacher_disagreement_score":0.0028976488,"about_ca_system_score_codex":0.00052117533,"about_ca_system_score_gemma":0.00077485695,"threshold_uncertainty_score":0.009693623},"labels":[],"label_agreement":null},{"id":"W4360600201","doi":"10.1080/19490976.2023.2190303","title":"Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Michael Smith Health Research BC; University of Alberta","keywords":"Biology; Microbiology; Gut flora; Escherichia coli; Microbial metabolism; Dysbiosis; Bacteria; Gene; Genetics; Immunology","score_opus":0.01025175082391925,"score_gpt":0.2634811080680758,"score_spread":0.2532293572441565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4360600201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97346425,0.0020825313,0.009983308,0.00040062235,0.00010687843,0.00009779118,0.00876659,0.00046421046,0.0046338025],"genre_scores_gemma":[0.95882815,0.0021801605,0.020239959,0.0009633471,0.000055932687,0.00017492347,0.013465022,0.00018522724,0.003907309],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996487,0.000038525694,0.000024331152,0.000106930434,0.0000998667,0.00008169521],"domain_scores_gemma":[0.9998516,0.00002325419,0.0000436326,0.000016871332,0.000043444383,0.000021303642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021198296,0.0006138333,0.0005868574,0.000299047,0.0004141643,0.000855094,0.00019280663,0.0004177757,0.00084236055],"category_scores_gemma":[0.00029185854,0.00020910407,0.00058885175,0.00045105687,0.00028242558,0.0003366261,0.00048887753,0.00061200315,0.00055308087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000097905206,0.00002632267,0.0041893725,0.00015120229,0.000012914573,0.000054397377,0.00005139539,0.0002226416,0.9913414,0.000053595206,0.00025133358,0.0035475472],"study_design_scores_gemma":[0.000015971791,0.00036931483,0.18730667,0.00009729977,0.0000904774,0.00045295595,0.00078418123,0.0057575167,0.7924704,0.0002526929,0.012339233,0.00006321505],"about_ca_topic_score_codex":0.0026424874,"about_ca_topic_score_gemma":0.0033381106,"teacher_disagreement_score":0.0026424874,"about_ca_system_score_codex":0.00032685683,"about_ca_system_score_gemma":0.00038179077,"threshold_uncertainty_score":0.0052542686},"labels":[],"label_agreement":null},{"id":"W4367554797","doi":"10.1080/19490976.2023.2201160","title":"Probiotics to improve the gut microbiome in premature infants: are we there yet?","year":2023,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Children's Hospital Foundation; Canadian Institutes of Health Research; Alberta Innovates; Alberta Innovates - Health Solutions; Children's Hospital Foundation","keywords":"Necrotizing enterocolitis; Microbiome; Metabolome; Probiotic; Gut microbiome; Biology; Sepsis; Gut flora; Immune system; Formula feeding; Intensive care medicine; Immunology; Bioinformatics; Medicine; Pediatrics; Breast feeding; Metabolomics","score_opus":0.05452166444206779,"score_gpt":0.35943591651287154,"score_spread":0.30491425207080375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367554797","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009707103,0.9992888,0.000037704434,0.00028559644,0.0001034065,0.000002201205,0.000008054147,0.0000025927557,0.00017460126],"genre_scores_gemma":[0.000484996,0.9991456,0.00008315594,0.00012313314,0.00006014546,0.0000034688808,0.000008844195,6.917347e-7,0.00008983339],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.999734,0.000077469165,0.000048825837,0.00003055227,0.000085237705,0.000023892364],"domain_scores_gemma":[0.99940515,0.00036129504,0.00006986126,0.000013817768,0.00012214419,0.000027808055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008484704,0.00059878547,0.0015379984,0.0011279613,0.00019217655,0.0011124304,0.00061367714,0.0010728315,0.002516264],"category_scores_gemma":[0.0020418018,0.00019598223,0.0008198063,0.0012179503,0.0002820916,0.0009540425,0.000621024,0.0013630269,0.00080395106],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001120935,0.00005320464,0.00024620586,0.03909192,0.00024093178,0.000104439496,0.00009464981,0.00011382625,0.0008972309,0.0015873795,0.01200808,0.94545007],"study_design_scores_gemma":[0.00007154355,0.00038617,0.0029300856,0.04651648,0.0011370551,0.0012168785,0.000290545,0.00014639045,0.000737424,0.0030073486,0.9435253,0.00003473399],"about_ca_topic_score_codex":0.0011517538,"about_ca_topic_score_gemma":0.0018921095,"teacher_disagreement_score":0.002516264,"about_ca_system_score_codex":0.0002750375,"about_ca_system_score_gemma":0.0010381963,"threshold_uncertainty_score":0.008417785},"labels":[],"label_agreement":null},{"id":"W4367834706","doi":"10.1080/19490976.2023.2205425","title":"Crohn’s disease proteolytic microbiota enhances inflammation through PAR2 pathway in gnotobiotic mice","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Weston Family Foundation; Deutsche Forschungsgemeinschaft; McMaster University","keywords":"Biology; Colitis; Proteases; Proteolytic enzymes; Inflammation; Immunology; NOD2; Proinflammatory cytokine; Microbiology; Immune system; Innate immune system; Biochemistry; Enzyme","score_opus":0.008784165331549455,"score_gpt":0.2356588135754637,"score_spread":0.22687464824391423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367834706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99594206,0.0007142512,0.0011885039,0.00024560982,0.000037997987,0.000040389477,0.0007484667,0.000100022706,0.000982665],"genre_scores_gemma":[0.98715484,0.001070751,0.0042911707,0.00030304227,0.000041698742,0.00016795013,0.0011893891,0.00008213824,0.005699195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995332,0.00008056696,0.000051781353,0.00013719105,0.000095781,0.0001014889],"domain_scores_gemma":[0.9993957,0.000037817263,0.00021157687,0.00005532577,0.000029722569,0.00026981003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003624394,0.00080393226,0.00056840526,0.0009174896,0.00025851786,0.000584497,0.00029374647,0.0007048744,0.0023702562],"category_scores_gemma":[0.00019018578,0.0004505507,0.000536087,0.00025764873,0.00055222225,0.0005208416,0.00037564998,0.0017584992,0.0005674379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078645814,0.00019203259,0.00034953412,0.00004330954,0.000008320698,0.000083617175,0.000026142558,0.00003779064,0.99772686,0.00006557669,0.000041866384,0.0006384665],"study_design_scores_gemma":[0.00042972353,0.006762809,0.04539399,0.000060748134,0.00010350709,0.0018817048,0.00027678386,0.00214706,0.93841606,0.00027885818,0.0042177094,0.00003116067],"about_ca_topic_score_codex":0.0003617078,"about_ca_topic_score_gemma":0.0007180835,"teacher_disagreement_score":0.0023702562,"about_ca_system_score_codex":0.00035952803,"about_ca_system_score_gemma":0.00024787604,"threshold_uncertainty_score":0.007929325},"labels":[],"label_agreement":null},{"id":"W4376612365","doi":"10.1080/19490976.2023.2211922","title":"The emerging role of the gut mycobiome in liver diseases","year":2023,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Regional Development Fund; Canadian Institutes of Health Research","keywords":"Biology; Microbiology","score_opus":0.018592701341911586,"score_gpt":0.308419352323147,"score_spread":0.2898266509812354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4376612365","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010471266,0.99860376,0.00010048312,0.0002992012,0.00020194001,0.0000015613109,0.000011896799,0.000006125279,0.00067031116],"genre_scores_gemma":[0.00074370165,0.9983027,0.00014277143,0.00018968823,0.00021784811,0.0000022314332,0.00001992578,0.0000014017912,0.00037963485],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998361,0.00003488634,0.00002266478,0.000028852228,0.000056352066,0.00002113914],"domain_scores_gemma":[0.99960047,0.00020562504,0.00004155723,0.000011205859,0.00009998081,0.000041165225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005523499,0.000608961,0.0010438478,0.0018169933,0.00028747364,0.001275362,0.00055428385,0.0011247466,0.004660482],"category_scores_gemma":[0.00078170456,0.00018877405,0.00043266654,0.0016893174,0.00039811913,0.0013884758,0.0008231178,0.0016765569,0.0019496814],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008691342,0.000048268845,0.00024286043,0.018303063,0.00009036359,0.0003745947,0.00009972249,0.0002554861,0.0025745223,0.005085808,0.024123855,0.94871455],"study_design_scores_gemma":[0.000009057468,0.00008773647,0.0009286738,0.0037363002,0.000104983184,0.0017823472,0.000075904834,0.000071909126,0.00052647357,0.0025850823,0.9900746,0.000017022967],"about_ca_topic_score_codex":0.00072724605,"about_ca_topic_score_gemma":0.0011725092,"teacher_disagreement_score":0.004660482,"about_ca_system_score_codex":0.00043546574,"about_ca_system_score_gemma":0.0010780118,"threshold_uncertainty_score":0.015590906},"labels":[],"label_agreement":null},{"id":"W4383873240","doi":"10.1080/19490976.2023.2231590","title":"Phenylpropionic acid produced by gut microbiota alleviates acetaminophen-induced hepatotoxicity","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Drug-Induced Hepatotoxicity and Protection","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health; Ministry of Health, British Columbia; National Research Foundation; National Center for Complementary and Integrative Health; University of Chicago; Purdue University; Chicago Community Trust","keywords":"Gut flora; Acetaminophen; Metabolite; Biology; CYP2E1; Cecum; Drug metabolism; Metabolism; Pharmacology; In vivo; Liver injury; Microbiology; Biochemistry; Cytochrome P450","score_opus":0.12543079580242464,"score_gpt":0.4039449844468337,"score_spread":0.278514188644409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383873240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99458295,0.0022072254,0.0016775656,0.00022249686,0.000075276424,0.000049421516,0.00030306875,0.0001436471,0.0007383718],"genre_scores_gemma":[0.99116313,0.0025287636,0.002743309,0.00022361308,0.000041056144,0.00007106134,0.0005270871,0.000035709065,0.002666307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99982196,0.00003261016,0.000017356262,0.000030471792,0.000051299998,0.000046280096],"domain_scores_gemma":[0.9998068,0.000008251206,0.000060389713,0.000014325891,0.000029549661,0.00008067023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013865305,0.0007208329,0.00052185636,0.0005318591,0.00020860485,0.00033727227,0.0002347727,0.0003875463,0.00095739745],"category_scores_gemma":[0.00016388233,0.00020193853,0.00036677552,0.00021923857,0.00026066092,0.00033275114,0.00036391898,0.0010184529,0.00017754424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001362003,0.00025292602,0.00041999208,0.00010297615,0.000019870487,0.000067164096,0.000019868423,0.000056827248,0.99383646,0.000030342075,0.000063894426,0.0037676562],"study_design_scores_gemma":[0.00019853793,0.008557692,0.027663182,0.000051462575,0.00020280467,0.0003564386,0.00018700873,0.001453813,0.95695806,0.0001259059,0.004218897,0.000026225924],"about_ca_topic_score_codex":0.00082871696,"about_ca_topic_score_gemma":0.0016586463,"teacher_disagreement_score":0.00095739745,"about_ca_system_score_codex":0.00018262953,"about_ca_system_score_gemma":0.00031736746,"threshold_uncertainty_score":0.003202796},"labels":[],"label_agreement":null},{"id":"W4384663914","doi":"10.1080/19490976.2023.2233679","title":"Alterations in fecal β-defensin-3 secretion as a marker of instability of the gut microbiota","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Health Foundation; McMaster University","keywords":"Dysbiosis; Biology; Feces; Defensin; Gut flora; Irritable bowel syndrome; Microbiome; Microbiology; Immunology; Internal medicine; Antimicrobial; Medicine; Bioinformatics","score_opus":0.009620316623805168,"score_gpt":0.26073405743907174,"score_spread":0.25111374081526655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4384663914","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970714,0.0008138258,0.0013343941,0.00004258225,0.000015923028,0.000042035048,0.0003342426,0.000032841497,0.00031274837],"genre_scores_gemma":[0.9959215,0.00067322433,0.0021021694,0.00007904169,0.000012489596,0.000077906254,0.00050231564,0.000011370377,0.00062006636],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997216,0.00004585936,0.00002781877,0.00008182819,0.0000705582,0.00005244096],"domain_scores_gemma":[0.9995553,0.0000337368,0.00021068116,0.000029186245,0.000031749878,0.00013940415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029263285,0.00058050436,0.00040900818,0.0006873731,0.00020514279,0.0004158159,0.00015553755,0.00045071737,0.00083802413],"category_scores_gemma":[0.0001970899,0.00022519486,0.00029551162,0.00039197583,0.0004875877,0.0002804189,0.0003419818,0.0009462508,0.00013231246],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007419676,0.000088514076,0.005080591,0.00003364669,0.000013148579,0.000030468675,0.000024044324,0.000025672349,0.9930254,0.000015413423,0.000013384443,0.00090764096],"study_design_scores_gemma":[0.0000558562,0.0066834735,0.30420682,0.00002684924,0.00009923042,0.00042759566,0.00020775612,0.0010411436,0.68605906,0.00013325257,0.0010374826,0.000021483673],"about_ca_topic_score_codex":0.00031619595,"about_ca_topic_score_gemma":0.00066601834,"teacher_disagreement_score":0.00083802413,"about_ca_system_score_codex":0.0002389428,"about_ca_system_score_gemma":0.00020670335,"threshold_uncertainty_score":0.0028034449},"labels":[],"label_agreement":null},{"id":"W4386084771","doi":"10.1080/19490976.2023.2246185","title":"Carbohydrate quality, fecal microbiota and cardiometabolic health in older adults: a cohort study","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Instituto de Salud Carlos III; Canadian Institutes of Health Research; Institució Catalana de Recerca i Estudis Avançats; Centro de Investigación Biomédica en Red-Fisiopatología de la Obesidad y Nutrición; Generalitat Valenciana; Almond Board of California","keywords":"Gut flora; Biology; Feces; Body mass index; Glycated hemoglobin; Population; Fecal coliform; Internal medicine; Type 2 diabetes; Diabetes mellitus; Medicine; Endocrinology; Microbiology; Environmental health; Immunology; Ecology; Water quality","score_opus":0.01023221147539454,"score_gpt":0.3065354891991184,"score_spread":0.29630327772372383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386084771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99863344,0.0003939056,0.00013411602,0.000034510427,0.00000924335,0.000017754452,0.00058895093,0.0000029193845,0.00018512072],"genre_scores_gemma":[0.9984168,0.00026011383,0.00023349497,0.000067021756,0.000021716634,0.000034107507,0.00065326475,0.0000030353594,0.00031051904],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99966764,0.000066797715,0.000037582136,0.00011407973,0.00005166347,0.00006221668],"domain_scores_gemma":[0.9994634,0.00004450331,0.00015092781,0.000109926375,0.000092293674,0.0001389524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086314016,0.00047350503,0.0006213851,0.00048160698,0.0006764279,0.0008262431,0.00032690947,0.00069364975,0.00097448006],"category_scores_gemma":[0.0010642051,0.00044616987,0.0008084926,0.0010533032,0.00018224059,0.0004831824,0.0005784886,0.0008056828,0.00026429933],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039733786,0.00012003572,0.9972888,0.000023098344,0.00028191548,0.0000702047,0.00012298474,0.00002183273,0.00045410462,0.000013470909,0.0001262857,0.0010800082],"study_design_scores_gemma":[0.00001768376,0.00018538442,0.9992047,0.0000070330675,0.000110688175,0.00007972881,0.00010567853,0.00009009,0.000022351278,0.000013873486,0.00015921776,0.0000035842759],"about_ca_topic_score_codex":0.01000893,"about_ca_topic_score_gemma":0.012541867,"teacher_disagreement_score":0.01000893,"about_ca_system_score_codex":0.00028852888,"about_ca_system_score_gemma":0.00037119215,"threshold_uncertainty_score":0.019901335},"labels":[],"label_agreement":null},{"id":"W4386624477","doi":"10.1080/19490976.2023.2256043","title":"Microbial stimulation of oxytocin release from the intestinal epithelium via secretin signaling","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Neuroendocrine regulation and behavior","field":"Psychology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institutes of Health; U.S. National Library of Medicine; Weston Family Foundation; Cancer Prevention and Research Institute of Texas","keywords":"Oxytocin; Intestinal epithelium; Secretin; Biology; Enteroendocrine cell; Secretion; Hormone; Stimulation; Epithelium; Internal medicine; Endocrinology; Cell biology; Endocrine system; Medicine","score_opus":0.030357707918565374,"score_gpt":0.30650117732024035,"score_spread":0.276143469401675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386624477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9823828,0.004438147,0.008053136,0.0003681673,0.00010144854,0.000021466838,0.0013514082,0.00017413737,0.003109208],"genre_scores_gemma":[0.9924469,0.0019448544,0.003606805,0.00014703658,0.000028911469,0.00002570309,0.00074498344,0.000034135926,0.0010207851],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99983394,0.000022042372,0.000010086653,0.00005412444,0.000041720432,0.000038035498],"domain_scores_gemma":[0.99985826,0.000035313533,0.00005250954,0.000013530884,0.000016921285,0.000023419841],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017334717,0.00020338353,0.0002711828,0.00024522122,0.00020721008,0.00066727924,0.00014723845,0.00037259524,0.0009207872],"category_scores_gemma":[0.0003798016,0.0001517516,0.00032724967,0.00017338437,0.00027643002,0.00045817616,0.0005898943,0.00046651933,0.0002139728],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001658983,0.000011231895,0.002678574,0.00009067895,0.0000135608425,0.00009793817,0.00005839439,0.00013146673,0.9906639,0.00013266105,0.00012029954,0.0058354423],"study_design_scores_gemma":[0.000032628217,0.00031983294,0.1580001,0.00010044123,0.000061145474,0.00051616086,0.0005943933,0.005719224,0.823352,0.0009038362,0.010361402,0.000038834492],"about_ca_topic_score_codex":0.00039635616,"about_ca_topic_score_gemma":0.0006148996,"teacher_disagreement_score":0.0009207872,"about_ca_system_score_codex":0.000254137,"about_ca_system_score_gemma":0.00015959919,"threshold_uncertainty_score":0.0030803084},"labels":[],"label_agreement":null},{"id":"W4387357682","doi":"10.1080/19490976.2023.2264457","title":"Successful weight regain attenuation by autologous fecal microbiota transplantation is associated with non-core gut microbiota changes during weight loss; randomized controlled trial","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Nursing Research; National Institutes of Health; Ministry of Science and Technology, Israel; Ministry of Science and Technology; Ministry of Health, British Columbia; National Institute on Aging; Deutsche Forschungsgemeinschaft; Rosetrees Trust; California Walnut Commission","keywords":"Biology; Feces; Gut flora; Microbiome; Weight loss; Firmicutes; Transplantation; Internal medicine; Calprotectin; Immunology; Obesity; Microbiology; Medicine; Endocrinology; Inflammatory bowel disease; Disease; Bioinformatics; Bacteria","score_opus":0.006476307901342484,"score_gpt":0.2382762325403287,"score_spread":0.23179992463898622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387357682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866143,0.0068759057,0.00063917565,0.00039945316,0.0006671876,0.003136669,0.0005189429,0.00012877448,0.0010195867],"genre_scores_gemma":[0.98702943,0.0031864976,0.001419161,0.000761218,0.0006663226,0.004828708,0.00040137285,0.000020549758,0.0016868752],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99942756,0.00021959122,0.000058221187,0.00013127456,0.000059681493,0.00010369531],"domain_scores_gemma":[0.99930453,0.00014070104,0.00020434195,0.00006233801,0.00005714825,0.00023093757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012520046,0.0010690555,0.002914001,0.00039512556,0.0005837003,0.0009938225,0.00067376654,0.0016766415,0.003797878],"category_scores_gemma":[0.0014146685,0.0004538932,0.0017530159,0.00043624957,0.00089268025,0.00078209874,0.0004967251,0.0025444927,0.00052326766],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9746816,0.009955561,0.0005381016,0.00074747595,0.0010442615,0.00001887912,0.000024774823,0.00006781712,0.0014346981,0.000033807475,0.0002340763,0.011218905],"study_design_scores_gemma":[0.82176435,0.16815275,0.006227737,0.00014817296,0.0015086915,0.000028635199,0.00004253031,0.00047113973,0.00085347495,0.00013975892,0.00064021006,0.000022605886],"about_ca_topic_score_codex":0.0006328434,"about_ca_topic_score_gemma":0.0012328962,"teacher_disagreement_score":0.003797878,"about_ca_system_score_codex":0.00037901817,"about_ca_system_score_gemma":0.000642661,"threshold_uncertainty_score":0.012705207},"labels":[],"label_agreement":null},{"id":"W4387439668","doi":"10.1080/19490976.2023.2259316","title":"Parity modulates impact of BMI and gestational weight gain on gut microbiota in human pregnancy","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Deutsche Forschungsgemeinschaft; Molly Towell Perinatal Research Foundation","keywords":"Pregnancy; Microbiome; Gut microbiome; Gut flora; Biology; Fetus; Psychological intervention; Gestation; Physiology; Parity (physics); Obstetrics; Immunology; Bioinformatics; Medicine; Genetics","score_opus":0.013757809323100747,"score_gpt":0.3039638094954154,"score_spread":0.2902060001723147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387439668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935916,0.0026203385,0.00086100795,0.00030904548,0.000050076782,0.000020963547,0.00081368454,0.000011368655,0.0017217993],"genre_scores_gemma":[0.9975756,0.00076655514,0.00056320213,0.00015497456,0.000008408838,0.00004325926,0.00023460301,0.000008671214,0.00064470037],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99954516,0.00022537599,0.00001961329,0.000084174295,0.00006094871,0.00006463846],"domain_scores_gemma":[0.99959713,0.00011665849,0.00012663957,0.000047407757,0.000053548112,0.000058683858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051680696,0.00015781923,0.00027738942,0.00018258305,0.0002687807,0.00051145605,0.00011787175,0.00029620552,0.0017946578],"category_scores_gemma":[0.0029264467,0.00016503427,0.00022279989,0.00032759772,0.00023985053,0.0002427373,0.00050104986,0.00044837076,0.00022961966],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0053494396,0.00024941785,0.84036285,0.00031384366,0.0002504344,0.000654394,0.0020665096,0.0002638058,0.08504972,0.0006954269,0.0011578881,0.063586295],"study_design_scores_gemma":[0.000013740519,0.00040047223,0.9935999,0.000050764564,0.00007006706,0.00032801347,0.00048731588,0.00025779635,0.002603383,0.00044157586,0.0017300532,0.000017054375],"about_ca_topic_score_codex":0.0028214683,"about_ca_topic_score_gemma":0.003526219,"teacher_disagreement_score":0.0028214683,"about_ca_system_score_codex":0.00024710255,"about_ca_system_score_gemma":0.00048129217,"threshold_uncertainty_score":0.0060037374},"labels":[],"label_agreement":null},{"id":"W4387661838","doi":"10.1080/19490976.2023.2267189","title":"Quorum sensing modulates bacterial virulence and colonization dynamics of the gastrointestinal pathogen Citrobacter rodentium","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Mitacs","keywords":"Citrobacter rodentium; Virulence; Biology; Quorum sensing; Pathogen; Microbiology; Citrobacter; Colonization; Context (archaeology); Population; Gastrointestinal tract; Human pathogen; Escherichia coli; Bacteria; Enterobacteriaceae; Genetics; Gene","score_opus":0.005276094740855028,"score_gpt":0.19738502607451958,"score_spread":0.19210893133366455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387661838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983564,0.00058578694,0.0004666414,0.0000797068,0.000009532865,0.0000072838907,0.00006824097,0.000015365227,0.00041101506],"genre_scores_gemma":[0.99870145,0.0001905525,0.00074757944,0.000036974543,0.0000032772518,0.0000054675456,0.00007034357,0.000004513447,0.00023976705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998123,0.000038121503,0.000011240359,0.000036364792,0.000042628104,0.000059308186],"domain_scores_gemma":[0.99988294,0.000023275266,0.000036862366,0.0000078190815,0.0000199905,0.000029125953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021707885,0.00018160744,0.00017219583,0.00011988379,0.0001238222,0.00027519933,0.00010504082,0.0002447146,0.0005442864],"category_scores_gemma":[0.00021858733,0.000098201795,0.00013434044,0.00007921838,0.00017016647,0.00019919794,0.00016551305,0.00029710942,0.00010696067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000067386594,0.000016360504,0.0008318861,0.000016522948,0.000001943031,0.000019441739,0.000011539806,0.000038629867,0.9981773,0.000020272662,0.000021503507,0.00077730103],"study_design_scores_gemma":[0.00000974188,0.00051220204,0.049564537,0.000012532095,0.00001531761,0.00018735351,0.00010454788,0.002343427,0.9461749,0.000053292064,0.0010082949,0.000013876977],"about_ca_topic_score_codex":0.0008607834,"about_ca_topic_score_gemma":0.0010295724,"teacher_disagreement_score":0.0008607834,"about_ca_system_score_codex":0.00020501783,"about_ca_system_score_gemma":0.00016018434,"threshold_uncertainty_score":0.0018208027},"labels":[],"label_agreement":null},{"id":"W4387931521","doi":"10.1080/19490976.2023.2271597","title":"Ascorbate deficiency increases progression of shigellosis in guinea pigs and mice infection models","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Vitamin C and Antioxidants Research","field":"Nursing","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Agence Nationale de la Recherche","keywords":"Shigellosis; Biology; Immunology; Microbiology; Shigella; Escherichia coli; Genetics","score_opus":0.02889023460769846,"score_gpt":0.31929894935497544,"score_spread":0.290408714747277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387931521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98782384,0.004188928,0.0028217647,0.00049150106,0.00023431194,0.00027558004,0.001606229,0.0002746688,0.0022831259],"genre_scores_gemma":[0.98015815,0.004681147,0.003911428,0.0003854187,0.000053219264,0.0008452968,0.00231944,0.0000758425,0.0075702104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995167,0.00009656248,0.000054818,0.00011235531,0.00007657773,0.00014294642],"domain_scores_gemma":[0.99950314,0.000060482358,0.00014221336,0.000047474685,0.00005081399,0.00019584777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006467766,0.0012014043,0.00087071414,0.00094381307,0.00029019598,0.0005478614,0.00052296603,0.0012720224,0.002558127],"category_scores_gemma":[0.0002478328,0.0005108081,0.00096396747,0.00032638942,0.0005451628,0.00061206846,0.0005119267,0.0025207323,0.0005062336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026356308,0.0015278262,0.0010995266,0.00030542217,0.000045414014,0.0002714606,0.0001510079,0.00029896855,0.9910012,0.00018007557,0.0002798174,0.002203774],"study_design_scores_gemma":[0.0006191551,0.03606681,0.019527739,0.00019294092,0.00032355095,0.0009101642,0.00036387108,0.0026884205,0.930675,0.00041667293,0.008129499,0.000086191634],"about_ca_topic_score_codex":0.0007946732,"about_ca_topic_score_gemma":0.001445117,"teacher_disagreement_score":0.002558127,"about_ca_system_score_codex":0.00041888515,"about_ca_system_score_gemma":0.00040820305,"threshold_uncertainty_score":0.008557856},"labels":[],"label_agreement":null},{"id":"W4389309449","doi":"10.1080/19490976.2023.2287073","title":"Gut microbiome-associated predictors as biomarkers of response to advanced therapies in inflammatory bowel disease: a systematic review","year":2023,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Microbiome; Inflammatory bowel disease; Butyrate; Disease; Biology; Metabolomics; Gut flora; Gut microbiome; Systematic review; Bioinformatics; Immunology; MEDLINE; Medicine; Internal medicine","score_opus":0.013350493175770606,"score_gpt":0.31357815362558616,"score_spread":0.3002276604498156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389309449","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00030193245,0.9991806,0.00004940277,0.00010496065,0.000045812787,0.000036099194,0.00017972612,0.0000030872754,0.0000983728],"genre_scores_gemma":[0.0038388185,0.9954405,0.00019281937,0.00018401725,0.00004677215,0.00007657539,0.00015355053,0.0000018229221,0.000065196335],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.99791735,0.0007155511,0.0006484483,0.00023742394,0.00038936947,0.000091810994],"domain_scores_gemma":[0.98875487,0.008483176,0.0016827218,0.000119609205,0.00081905123,0.00014058426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003481632,0.0014278902,0.0062995628,0.005963615,0.00037181054,0.0017479779,0.0012603014,0.0013500474,0.004799522],"category_scores_gemma":[0.016305476,0.00057688385,0.0065369946,0.0068681547,0.00043070054,0.0013534507,0.0010501632,0.0008859023,0.0004144364],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003224901,0.000023996292,0.0015251713,0.87952447,0.010773687,0.00008674631,0.000087270644,0.00020033453,0.00015333062,0.00030900922,0.0032647827,0.10372871],"study_design_scores_gemma":[0.00029452972,0.00031081284,0.011870629,0.8244854,0.11190563,0.0006066137,0.00018325355,0.00021438673,0.00023788227,0.000715291,0.04910537,0.0000702934],"about_ca_topic_score_codex":0.005886474,"about_ca_topic_score_gemma":0.016354574,"teacher_disagreement_score":0.0062995628,"about_ca_system_score_codex":0.0016476357,"about_ca_system_score_gemma":0.0056712846,"threshold_uncertainty_score":0.018412828},"labels":[],"label_agreement":null},{"id":"W4389572904","doi":"10.1080/19490976.2023.2281011","title":"Butyrate reduces adherent-invasive E. coli -evoked disruption of epithelial mitochondrial morphology and barrier function: involvement of free fatty acid receptor 3","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"International Microbiome Centre, University of Calgary; Indian Institute of Technology Bombay; Canadian Institutes of Health Research; Canterbury Medical Research Foundation","keywords":"Biology; Butyrate; Barrier function; Function (biology); Cell biology; Receptor; Morphology (biology); Mitochondrion; Biochemistry; Zoology","score_opus":0.013724838046543716,"score_gpt":0.24611861235394497,"score_spread":0.23239377430740127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389572904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98543537,0.007885218,0.0022324314,0.0007819599,0.00021141276,0.00009086733,0.0013251839,0.00019249554,0.0018449794],"genre_scores_gemma":[0.98736817,0.0047011166,0.0016645414,0.0004443048,0.00003411797,0.000110148016,0.001406892,0.000043886866,0.0042266976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976903,0.000040770497,0.000030893338,0.000028737979,0.00004283854,0.00008783252],"domain_scores_gemma":[0.999824,0.00002079927,0.000050680977,0.000019100395,0.000033995722,0.000051526826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018112875,0.00042588075,0.0006738055,0.00017237323,0.00015108817,0.0003977565,0.00024460192,0.0005577126,0.0027029598],"category_scores_gemma":[0.00019566536,0.00019277888,0.00054821087,0.00017219415,0.00020263946,0.00031138613,0.00025937974,0.0009297848,0.0005996693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014678469,0.00016341187,0.00020255292,0.00013702712,0.0000134400025,0.000037659356,0.00001383319,0.000047393478,0.9962521,0.000022341048,0.00011143944,0.0015309098],"study_design_scores_gemma":[0.00013481952,0.0034298352,0.014126997,0.000046566172,0.00006889349,0.00018963887,0.0001544673,0.0009854167,0.97724867,0.0000726485,0.0035286993,0.000013398042],"about_ca_topic_score_codex":0.0009237143,"about_ca_topic_score_gemma":0.0012394334,"teacher_disagreement_score":0.0027029598,"about_ca_system_score_codex":0.00023933429,"about_ca_system_score_gemma":0.00030274416,"threshold_uncertainty_score":0.009042263},"labels":[],"label_agreement":null},{"id":"W4389883521","doi":"10.1080/19490976.2023.2293170","title":"Cytolethal distending toxin B inoculation leads to distinct gut microtypes and IBS-D-like microRNA-mediated gene expression changes in a rodent model","year":2023,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Bausch Health; National Philanthropic Trust","keywords":"Biology; Cytolethal distending toxin; Clostridium difficile toxin B; Microbiology; Intestinal permeability; Microbiome; Irritable bowel syndrome; Gene expression; Immunology; Toxin; Clostridium difficile toxin A; Gene; Clostridium difficile; Internal medicine; Medicine; Genetics","score_opus":0.017232102860705003,"score_gpt":0.27164768513898097,"score_spread":0.254415582278276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389883521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970216,0.00038624112,0.0012235146,0.00010923791,0.00003762165,0.00005022038,0.00067293004,0.0000755554,0.0004230497],"genre_scores_gemma":[0.9933727,0.0005881722,0.0021491423,0.00015968368,0.000012880603,0.00018780449,0.0009053523,0.000033503326,0.0025907368],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996886,0.00003686698,0.00003334649,0.000089258036,0.00006152937,0.00009043162],"domain_scores_gemma":[0.99971217,0.000015697819,0.00011935241,0.000026213693,0.000021470334,0.00010514848],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015001753,0.0004948886,0.0003294343,0.0007168784,0.00021474066,0.00030215044,0.0001852201,0.00042618837,0.0013181624],"category_scores_gemma":[0.00014508798,0.00032334833,0.0005061002,0.00025341404,0.0004948909,0.00025288304,0.0002807755,0.0010697005,0.00029001647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00095360127,0.00015925641,0.0008112536,0.00003359075,0.000009772855,0.00010677318,0.000031983207,0.00004309836,0.9969902,0.00004489631,0.000044626522,0.0007709121],"study_design_scores_gemma":[0.00015837919,0.0060438192,0.062008195,0.000025157353,0.00007669973,0.0008543725,0.00044091203,0.001582636,0.926781,0.00014645795,0.0018525039,0.000029753859],"about_ca_topic_score_codex":0.0006890308,"about_ca_topic_score_gemma":0.0012433117,"teacher_disagreement_score":0.0013181624,"about_ca_system_score_codex":0.00031433874,"about_ca_system_score_gemma":0.0002558766,"threshold_uncertainty_score":0.004409671},"labels":[],"label_agreement":null},{"id":"W4391447401","doi":"10.1080/19490976.2024.2308049","title":"Citrobacter rodentium possesses a functional type II secretion system necessary for successful host infection","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Microbiology; Enteropathogenic Escherichia coli; Effector; Virulence; Pathogen; Type three secretion system; Secretion; Colonization; Pathogenicity island; Immunology; Gene; Genetics","score_opus":0.012376653967404446,"score_gpt":0.26834540408011986,"score_spread":0.2559687501127154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391447401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98712873,0.00168551,0.005828915,0.00021999124,0.000053623044,0.000065085806,0.0021617687,0.00031450024,0.0025418303],"genre_scores_gemma":[0.9916888,0.00034563028,0.0045151166,0.000081405284,0.000014106509,0.000028129452,0.002407357,0.000028819077,0.00089062745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974793,0.000042899945,0.000031107855,0.00005301747,0.00006242804,0.00006259885],"domain_scores_gemma":[0.9997986,0.0000142290855,0.000068473164,0.000040127656,0.00003717017,0.00004136486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017916903,0.00054637203,0.00027765348,0.00020773825,0.00011745562,0.00039410102,0.00020251467,0.00024123832,0.00072237774],"category_scores_gemma":[0.00023176354,0.00010324911,0.00025670105,0.00017987752,0.00015700347,0.00017877959,0.0002681408,0.00025652125,0.00046914554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006649596,0.000024632265,0.0012602378,0.00005176942,0.000005202503,0.00009464799,0.000009898296,0.000057181795,0.9967644,0.000057854235,0.00009487835,0.0015126336],"study_design_scores_gemma":[0.000018949713,0.0009952029,0.04163989,0.000034985,0.000031467876,0.0031245393,0.000087984,0.0009867564,0.94425845,0.000082003615,0.008719442,0.000020325599],"about_ca_topic_score_codex":0.00095910515,"about_ca_topic_score_gemma":0.0008325014,"teacher_disagreement_score":0.00095910515,"about_ca_system_score_codex":0.00019671311,"about_ca_system_score_gemma":0.00021122131,"threshold_uncertainty_score":0.0024166107},"labels":[],"label_agreement":null},{"id":"W4391447409","doi":"10.1080/19490976.2024.2305477","title":"Direct evidence of host-mediated glycosylation of NleA and its dependence on interaction with the COPII complex","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; McGill University Health Centre; McGill University","funders":"Fonds de Recherche du Québec - Santé; Canadian Glycomics Network; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Biology; Effector; Virulence; Glycosylation; Enteropathogenic Escherichia coli; Microbiology; Genetics; Gene; Cell biology","score_opus":0.031066541551783948,"score_gpt":0.3150325543330532,"score_spread":0.28396601278126926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391447409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.983932,0.0019584466,0.008642085,0.00021657022,0.000040454794,0.00004948355,0.00038358473,0.000110935245,0.004666454],"genre_scores_gemma":[0.99249953,0.0005588639,0.0039446247,0.00008108025,0.000009513125,0.000025989624,0.0004920083,0.000027704622,0.0023607942],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996892,0.00007107696,0.000024645926,0.00004771431,0.00009849584,0.00006894779],"domain_scores_gemma":[0.99966335,0.000096530785,0.00005561194,0.00005075273,0.000048719132,0.00008494831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002751112,0.00027197174,0.00019675099,0.00017897302,0.00016172798,0.00031120746,0.00022009142,0.00027646165,0.0019293305],"category_scores_gemma":[0.0003512122,0.00009663135,0.00026925933,0.00018607473,0.00026477425,0.0002974728,0.0003442721,0.00056280213,0.00033861492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006434361,0.000028123635,0.00045612725,0.000030759373,0.0000053350477,0.000064233434,0.000010871443,0.000013959995,0.99882656,0.00009020048,0.000016714586,0.0003928307],"study_design_scores_gemma":[0.000006541495,0.00012770067,0.0134660555,0.000004300569,0.000009106181,0.0004569466,0.00003390314,0.0005857879,0.9838833,0.000051885974,0.0013693327,0.0000050617405],"about_ca_topic_score_codex":0.00081134384,"about_ca_topic_score_gemma":0.0007196969,"teacher_disagreement_score":0.0019293305,"about_ca_system_score_codex":0.0002673956,"about_ca_system_score_gemma":0.00017502547,"threshold_uncertainty_score":0.006454289},"labels":[],"label_agreement":null},{"id":"W4391689254","doi":"10.1080/19490976.2024.2308956","title":"The IBS bug-pain connection","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; McMaster University; Population Health Research Institute","funders":"","keywords":"Biology; Connection (principal bundle); Bioinformatics","score_opus":0.008968632048840075,"score_gpt":0.2513281352538715,"score_spread":0.2423595032050314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391689254","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10804228,0.21958652,0.008445015,0.47934267,0.018063668,0.00006474332,0.00075803674,0.00023165249,0.16546537],"genre_scores_gemma":[0.84577,0.067324854,0.0051101786,0.051802054,0.010081518,0.00007583218,0.00024406199,0.00010588802,0.019485617],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","domain_scores_codex":[0.9991999,0.0003072338,0.00004665226,0.00010019594,0.00016265576,0.00018323494],"domain_scores_gemma":[0.99829906,0.00096743956,0.00017838471,0.00012845431,0.00017123998,0.00025538198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009918705,0.00039154934,0.0006047699,0.0013519439,0.0013062436,0.002786067,0.00056856754,0.004002741,0.016828155],"category_scores_gemma":[0.0046981517,0.00031029442,0.0005252458,0.0010049806,0.0047196588,0.0033813787,0.0032557147,0.005612676,0.0014606433],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011937257,0.00035859205,0.04015832,0.0015951209,0.00038080823,0.012459761,0.0056588035,0.0005952698,0.0036630635,0.54448795,0.13673076,0.25271782],"study_design_scores_gemma":[0.0004245726,0.0005292472,0.087383725,0.003299805,0.00022881945,0.03165709,0.008474317,0.0012540548,0.0006673409,0.46523336,0.40067658,0.00017101964],"about_ca_topic_score_codex":0.0018496423,"about_ca_topic_score_gemma":0.002530956,"teacher_disagreement_score":0.016828155,"about_ca_system_score_codex":0.00093601795,"about_ca_system_score_gemma":0.0011185784,"threshold_uncertainty_score":0.056295753},"labels":[],"label_agreement":null},{"id":"W4392374502","doi":"10.1080/19490976.2024.2323234","title":"Maternal smoking during pregnancy increases the risk of gut microbiome-associated childhood overweight and obesity","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Obesity, Physical Activity, Diet","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's Hospital Research Institute of Manitoba; BC Children's Hospital; University of Toronto; SickKids Foundation; Public Health Ontario; University of British Columbia; Hospital for Sick Children; Child and Family Research Institute; University of Alberta; University of Manitoba; Simon Fraser University","funders":"Canadian Institutes of Health Research; Hong Kong Government; Chinese University of Hong Kong","keywords":"Overweight; Pregnancy; Offspring; Obesity; Childhood obesity; Gut flora; Biology; Microbiome; Environmental health; Physiology; Obstetrics; Medicine; Endocrinology; Immunology; Bioinformatics; Genetics","score_opus":0.005126682600147649,"score_gpt":0.2181180064666651,"score_spread":0.21299132386651745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392374502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701464,0.0013761207,0.00022034126,0.00016044757,0.000013715049,0.0000067617725,0.0003283451,0.000008992276,0.00087070104],"genre_scores_gemma":[0.9986363,0.00064532435,0.00018120096,0.00003459957,0.0000067755873,0.000005257769,0.0001409352,0.000002817243,0.0003468201],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99960476,0.00007406671,0.000020819652,0.000076923825,0.000105861276,0.000117640084],"domain_scores_gemma":[0.99947315,0.000102211954,0.00019777585,0.000059851795,0.00005868861,0.00010828048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040868545,0.00023326771,0.00026549114,0.0003650269,0.00047076808,0.0005011953,0.00028194024,0.00034185726,0.0014363546],"category_scores_gemma":[0.0016134852,0.00024742435,0.0003257829,0.00058345054,0.00021163923,0.00013852632,0.0003096162,0.0005698104,0.00009518436],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017934329,0.000018529998,0.9942702,0.000012488678,0.00007324369,0.00010770202,0.00007141244,0.000028271692,0.0011860342,0.000035746845,0.00009647775,0.003920482],"study_design_scores_gemma":[0.0000017414895,0.000023813387,0.9993299,0.000010536595,0.00003641157,0.00010772406,0.00005059809,0.000120762175,0.00012501882,0.00002175676,0.00017016266,0.0000015675969],"about_ca_topic_score_codex":0.14548567,"about_ca_topic_score_gemma":0.16896877,"teacher_disagreement_score":0.14548567,"about_ca_system_score_codex":0.00074286776,"about_ca_system_score_gemma":0.0011458505,"threshold_uncertainty_score":0.28927767},"labels":[],"label_agreement":null},{"id":"W4396517683","doi":"10.1080/19490976.2024.2345134","title":"Recipient microbiome-related features predicting metabolic improvement following fecal microbiota transplantation in adults with severe obesity and metabolic syndrome: a secondary analysis of a phase 2 clinical trial","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Science Foundation of Fujian Province; National Natural Science Foundation of China","keywords":"Fecal bacteriotherapy; Biology; Microbiome; Obesity; Metabolic syndrome; Feces; Transplantation; Gut microbiome; Gut flora; Internal medicine; Bioinformatics; Immunology; Medicine; Endocrinology; Microbiology; Antibiotics; Clostridium difficile","score_opus":0.007527358096331495,"score_gpt":0.2920661454491984,"score_spread":0.2845387873528669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396517683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967535,0.001171874,0.00040955527,0.00011195133,0.000059217426,0.00071428186,0.00035880416,0.000021487913,0.00039939184],"genre_scores_gemma":[0.99614257,0.00036027533,0.0008778949,0.00023140514,0.00011625687,0.0011197377,0.00067386846,0.000008453389,0.0004695156],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.9989429,0.00058467645,0.00009082076,0.00016474242,0.00009055214,0.00012631938],"domain_scores_gemma":[0.9985208,0.00032209163,0.00048795665,0.00021170054,0.0001389961,0.00031853956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034328797,0.0010861667,0.001973499,0.00028895502,0.00037903266,0.00092373847,0.0002630108,0.00070634636,0.002271815],"category_scores_gemma":[0.0019786288,0.00028713373,0.002204579,0.00034600217,0.0003965858,0.00068642356,0.0004796905,0.001297858,0.00031927787],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.8916111,0.009993252,0.050744057,0.00073827355,0.0046061794,0.000077600846,0.000093257695,0.00046201542,0.0103902975,0.000097677694,0.0006318559,0.030554356],"study_design_scores_gemma":[0.1948192,0.47869232,0.3075248,0.0001473198,0.00855896,0.000277278,0.00016763671,0.0023825094,0.0046842303,0.00043929846,0.0022318778,0.000074535754],"about_ca_topic_score_codex":0.00014653911,"about_ca_topic_score_gemma":0.00033953346,"teacher_disagreement_score":0.0034328797,"about_ca_system_score_codex":0.00027083504,"about_ca_system_score_gemma":0.0005642376,"threshold_uncertainty_score":0.018155038},"labels":[],"label_agreement":null},{"id":"W4396583421","doi":"10.1080/19490976.2024.2335879","title":"Human gut microbiota and their production of endocannabinoid-like mediators are directly affected by a dietary oil","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Cannabis and Cannabinoid Research","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Social Sciences and Humanities Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Endocannabinoid system; Biology; Gut flora; Gut–brain axis; Oil production; Biotechnology; Food science; Immunology; Biochemistry","score_opus":0.00914078016716383,"score_gpt":0.2618793101169711,"score_spread":0.2527385299498072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396583421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865156,0.00028288065,0.0005501762,0.000012451425,0.0000024260898,0.0000069573866,0.0002413474,0.000007725061,0.0002445034],"genre_scores_gemma":[0.99843067,0.00020303285,0.00086862984,0.00001073421,0.0000017761896,0.000014267492,0.00026893377,0.0000022329757,0.00019960279],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99969923,0.00009576731,0.000018682938,0.00007881233,0.000059106012,0.000048395657],"domain_scores_gemma":[0.9998079,0.000041552295,0.00007026855,0.000022332055,0.000034447407,0.000023536972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002657264,0.00028496888,0.00028784855,0.0003042743,0.00016813252,0.00043814248,0.0000815065,0.00022912431,0.00087677076],"category_scores_gemma":[0.00065273314,0.00015050526,0.00022287595,0.00043893448,0.0001574804,0.00013362805,0.00039018795,0.00016409939,0.0001803302],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019657873,0.00014182838,0.48085383,0.00021034469,0.0003655274,0.00022150757,0.00039237813,0.0033988908,0.48940697,0.00019160743,0.0001565418,0.022694832],"study_design_scores_gemma":[0.000022849124,0.00088984054,0.93110055,0.00002526629,0.00021963682,0.00028829224,0.00070104306,0.0075933966,0.056746557,0.00042804566,0.0019565434,0.000028030012],"about_ca_topic_score_codex":0.00214292,"about_ca_topic_score_gemma":0.0020458514,"teacher_disagreement_score":0.00214292,"about_ca_system_score_codex":0.00017175896,"about_ca_system_score_gemma":0.00022405718,"threshold_uncertainty_score":0.004260838},"labels":[],"label_agreement":null},{"id":"W4396722003","doi":"10.1080/19490976.2024.2350778","title":"Ethanolamine enhances adhesion, promotes microcompartment formation, and modulates gene expression in Levilactobacillus brevis ATCC 14869","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Toronto; Lawson Health Research Institute","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ethanolamine; Biology; Microbiology; Virulence; Gene; Bacteria; Biochemistry; Genetics","score_opus":0.012844831595555505,"score_gpt":0.21551431153994116,"score_spread":0.20266947994438567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396722003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99801624,0.0003068602,0.00061635725,0.000079773316,0.000011937189,0.000013073679,0.00027019024,0.00003779774,0.0006478518],"genre_scores_gemma":[0.99544454,0.0002457961,0.001311479,0.000097499236,0.0000103269795,0.00003551882,0.0008678252,0.000017560082,0.0019694888],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980205,0.00003806832,0.000018418876,0.000029921115,0.000050587827,0.00006091486],"domain_scores_gemma":[0.99992776,0.000015377616,0.000020371217,0.0000069257903,0.00001404513,0.000015503576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010151215,0.0002884906,0.00026436587,0.00017590082,0.00012454548,0.0003483184,0.00014494127,0.0002044141,0.00080188864],"category_scores_gemma":[0.00013315196,0.00011494872,0.00025420415,0.00016794009,0.00012732804,0.00014399325,0.00022255063,0.0003104885,0.00026511322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007755244,0.00002460282,0.000135513,0.000009472731,0.0000015142788,0.000014757646,0.000010908423,0.0000151483555,0.9993656,0.000008609446,0.0000167841,0.00031953232],"study_design_scores_gemma":[0.000013615713,0.0006496267,0.021017073,0.0000075751796,0.000014027574,0.00008648178,0.00014978107,0.0011614788,0.9757259,0.000028213975,0.0011375167,0.000008789155],"about_ca_topic_score_codex":0.00219307,"about_ca_topic_score_gemma":0.0018726089,"teacher_disagreement_score":0.00219307,"about_ca_system_score_codex":0.00018726331,"about_ca_system_score_gemma":0.00011193974,"threshold_uncertainty_score":0.004360676},"labels":[],"label_agreement":null},{"id":"W4396746733","doi":"10.1080/19490976.2024.2347715","title":"Metabolome-associated psychological comorbidities improvement in irritable bowel syndrome patients receiving a probiotic","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"","keywords":"Irritable bowel syndrome; Probiotic; Butyric acid; Gut flora; Metabolome; Internal medicine; Anxiety; Feces; Diarrhea; Biology; Medicine; Gastroenterology; Psychiatry; Immunology; Microbiology; Food science; Metabolite; Bacteria","score_opus":0.009782873771578196,"score_gpt":0.2637873297178797,"score_spread":0.2540044559463015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396746733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99227387,0.0068367934,0.00017555249,0.0001270473,0.000058566762,0.0001305855,0.00014211428,0.000016089818,0.00023924322],"genre_scores_gemma":[0.99642134,0.0019648315,0.00063768553,0.00022747938,0.00004725479,0.00016335813,0.00026138034,0.0000030939643,0.00027354024],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.99985254,0.000060286246,0.000017583023,0.000025072874,0.000021607408,0.00002292268],"domain_scores_gemma":[0.999811,0.000036177127,0.00006351949,0.00001124771,0.000027581016,0.00005048764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041145174,0.00043231592,0.0012098851,0.00019412096,0.00020252047,0.0002794887,0.00012784911,0.00043043296,0.0010791097],"category_scores_gemma":[0.0004411602,0.00014814157,0.000598971,0.00020981427,0.0001707661,0.0001844647,0.00015997309,0.0005609925,0.0000714263],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.55986845,0.010848202,0.039023872,0.0043949974,0.0045540184,0.00030526333,0.00015501287,0.000591598,0.19056213,0.00007506241,0.0008072179,0.18881418],"study_design_scores_gemma":[0.06762914,0.30084187,0.590588,0.00039000256,0.0066816197,0.00044048464,0.00027385115,0.0020324397,0.026971672,0.00017499925,0.0038997785,0.00007608594],"about_ca_topic_score_codex":0.00038969726,"about_ca_topic_score_gemma":0.0009361664,"teacher_disagreement_score":0.0012098851,"about_ca_system_score_codex":0.00019730783,"about_ca_system_score_gemma":0.00019891343,"threshold_uncertainty_score":0.003610015},"labels":[],"label_agreement":null},{"id":"W4396889572","doi":"10.1080/19490976.2024.2353394","title":"Fecal transplant from vaginally seeded infants decreases intraabdominal adiposity in mice","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institutes of Health; National Cancer Institute; National Heart, Lung, and Blood Institute; National Institute of Allergy and Infectious Diseases; Johns Hopkins University; Canadian Institute for Advanced Research","keywords":"Biology; Microbiome; Physiology; Metabolome; Seeding; Feces; Lactobacillus; Endocrinology; Internal medicine; Medicine; Microbiology; Metabolite; Bacteria; Bioinformatics","score_opus":0.005546722300920749,"score_gpt":0.24309998365203567,"score_spread":0.23755326135111493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396889572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975546,0.0009131313,0.00059347285,0.00012420994,0.000067128785,0.000055611396,0.00028614406,0.000083339415,0.00032233188],"genre_scores_gemma":[0.9934117,0.0017376776,0.0016418286,0.00019345016,0.00004488229,0.00019411175,0.00050446996,0.000035009743,0.0022368105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999762,0.000060613987,0.000020969019,0.00005445053,0.000031591666,0.00007038423],"domain_scores_gemma":[0.9995819,0.000038506667,0.00014695086,0.00005059106,0.0000232457,0.00015891706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003897896,0.00061419763,0.00066031783,0.00038419705,0.00020243725,0.00041111163,0.00031038167,0.00071271596,0.0014275773],"category_scores_gemma":[0.00026557723,0.00028675864,0.00046856003,0.0002096235,0.00041942493,0.00031600066,0.00025515308,0.0012828637,0.0002477383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022040641,0.0035676814,0.0007538681,0.00019315824,0.000060160688,0.00009106675,0.000051949868,0.00017914493,0.9628388,0.00009583854,0.00018424609,0.009943503],"study_design_scores_gemma":[0.0031625486,0.11980217,0.014202731,0.00009410136,0.00022878726,0.00033852187,0.00021360203,0.0012521052,0.8577152,0.00018619564,0.0027700758,0.000033970988],"about_ca_topic_score_codex":0.00035617693,"about_ca_topic_score_gemma":0.0005833605,"teacher_disagreement_score":0.0014275773,"about_ca_system_score_codex":0.00019545968,"about_ca_system_score_gemma":0.00032902404,"threshold_uncertainty_score":0.0047757626},"labels":[],"label_agreement":null},{"id":"W4398235118","doi":"10.1080/19490976.2024.2351478","title":"Pathogenesis and therapeutic opportunities of gut microbiome dysbiosis in critical illness","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; University of Calgary","keywords":"Dysbiosis; Microbiome; Critical illness; Gut flora; Intensive care medicine; Biology; Intensive care unit; Adverse effect; Disease; Bioinformatics; Medicine; Immunology; Critically ill; Internal medicine; Pharmacology","score_opus":0.08546710615380751,"score_gpt":0.3794512939914076,"score_spread":0.29398418783760005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398235118","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000091910406,0.99854636,0.00009099691,0.00037709545,0.0002641438,0.0000029631742,0.000010703518,0.0000050112008,0.00061086233],"genre_scores_gemma":[0.00058542116,0.99840975,0.00013528876,0.000253665,0.00023614409,0.000005521173,0.000017919525,0.0000011626639,0.00035515768],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.999838,0.000041852185,0.00002066074,0.000025079851,0.000056098972,0.000018312852],"domain_scores_gemma":[0.9997074,0.00015367668,0.00003160052,0.0000083996,0.00006640929,0.0000324934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055845815,0.0006459327,0.0010156938,0.0017159374,0.0002572099,0.0008944827,0.0007378767,0.0012978313,0.0033218344],"category_scores_gemma":[0.0008804481,0.0001818965,0.00047729054,0.001217041,0.00044225386,0.0010073239,0.00080430816,0.0019673898,0.0013383898],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012607148,0.00008322555,0.00017084333,0.018076904,0.00010159762,0.00022623566,0.000076065386,0.00042700567,0.0021559487,0.0063085295,0.030552449,0.94169503],"study_design_scores_gemma":[0.000029474833,0.00016591862,0.0009953778,0.0063622305,0.000119954755,0.0012918791,0.00008256321,0.00012974121,0.0004939562,0.0039199875,0.986388,0.000020818668],"about_ca_topic_score_codex":0.0005354058,"about_ca_topic_score_gemma":0.0011282788,"teacher_disagreement_score":0.0033218344,"about_ca_system_score_codex":0.0005144464,"about_ca_system_score_gemma":0.0009233658,"threshold_uncertainty_score":0.01111263},"labels":[],"label_agreement":null},{"id":"W4399034497","doi":"10.1080/19490976.2024.2356277","title":"The impact of gestational diabetes on functional capacity of the infant gut microbiome is modest and transient","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gestational Diabetes Research and Management","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Hospital for Sick Children; University of Toronto","funders":"University of Toronto; Government of Ontario; Compute Canada; Heart and Stroke Foundation of Canada","keywords":"Microbiome; Biology; Gestational diabetes; Gut microbiome; Diabetes mellitus; Gut flora; Transient (computer programming); Physiology; Environmental health; Bioinformatics; Pregnancy; Gestation; Immunology; Endocrinology; Medicine; Genetics; Computer science","score_opus":0.018275484815074124,"score_gpt":0.2738619611804236,"score_spread":0.2555864763653495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399034497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99195355,0.004559438,0.00042392622,0.00027895204,0.000031363707,0.000009783555,0.00030386183,0.000010219642,0.002428874],"genre_scores_gemma":[0.9961886,0.0024266168,0.00046898573,0.000119999146,0.000018395938,0.000014055576,0.00021627963,0.0000078621715,0.0005392374],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99930906,0.00019009305,0.000043098073,0.00013290721,0.00017581807,0.00014892143],"domain_scores_gemma":[0.9985359,0.00043169892,0.0005338762,0.00019607927,0.00009469366,0.00020771833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006561342,0.00030482333,0.00033462836,0.00029294155,0.00024072455,0.0009031718,0.00023111344,0.00036921917,0.0011125051],"category_scores_gemma":[0.0025994764,0.00015424243,0.0003424885,0.00033216825,0.00046134324,0.00037787846,0.0008617411,0.00066614023,0.0001877498],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002739023,0.00020394113,0.63070697,0.00055100565,0.0002603988,0.0015238788,0.00078228826,0.0005095595,0.25380397,0.00075848156,0.00050600554,0.107654415],"study_design_scores_gemma":[0.0000052682135,0.00045902483,0.9907116,0.000057782505,0.00005304292,0.0006237363,0.00035200108,0.00015353953,0.005787717,0.0002261761,0.0015624714,0.000007570536],"about_ca_topic_score_codex":0.0021476797,"about_ca_topic_score_gemma":0.002742963,"teacher_disagreement_score":0.0021476797,"about_ca_system_score_codex":0.0004936097,"about_ca_system_score_gemma":0.00046949892,"threshold_uncertainty_score":0.004270375},"labels":[],"label_agreement":null},{"id":"W4399294879","doi":"10.1080/19490976.2024.2359691","title":"Vaccines against extraintestinal pathogenic Escherichia coli (ExPEC): progress and challenges","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; Beef Cattle Research Council","keywords":"Biology; Escherichia coli; Pathogenic Escherichia coli; Microbiology; Virology; Genetics; Gene","score_opus":0.04913125290899764,"score_gpt":0.3267055051810775,"score_spread":0.2775742522720799,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399294879","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00024055285,0.9980958,0.0001630684,0.00044150275,0.0002560623,0.000006401701,0.00003199492,0.000014180394,0.0007503911],"genre_scores_gemma":[0.0010084693,0.9978123,0.00021181234,0.00028763514,0.00013004085,0.000009120919,0.00005392925,0.0000022440154,0.0004844698],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998312,0.00003468933,0.000021210584,0.000022767008,0.00006225967,0.000027831295],"domain_scores_gemma":[0.99972063,0.00012588862,0.00003958368,0.000009016296,0.00007660138,0.000028277853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057534827,0.0005642521,0.0009619298,0.0010120093,0.00014411371,0.0007037555,0.0005822148,0.0009315352,0.002748529],"category_scores_gemma":[0.00078407105,0.0001889208,0.00049121614,0.00079436396,0.00028288263,0.0009664006,0.00048863597,0.0016338534,0.0015078937],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010212062,0.00006857054,0.0001580894,0.016322052,0.000076799246,0.00008734607,0.000039680854,0.00032733477,0.003472644,0.002575757,0.02606282,0.9507069],"study_design_scores_gemma":[0.000023085011,0.00019079076,0.0006514197,0.003937053,0.00012039473,0.0004926355,0.00004134549,0.00007288846,0.0010502688,0.0011187706,0.99228776,0.000013535213],"about_ca_topic_score_codex":0.00059320306,"about_ca_topic_score_gemma":0.00092580426,"teacher_disagreement_score":0.002748529,"about_ca_system_score_codex":0.00038300635,"about_ca_system_score_gemma":0.00080157473,"threshold_uncertainty_score":0.009194732},"labels":[],"label_agreement":null},{"id":"W4399529977","doi":"10.1080/19490976.2024.2363021","title":"Adaptation to tolerate high doses of arabinoxylan is associated with fecal levels of Bifidobacterium longum","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Food composition and properties","field":"Nursing","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"European Research Council; Canadian Institutes of Health Research","keywords":"Biology; Bifidobacterium longum; Adaptation (eye); Microbiology; Feces; Arabinoxylan; Bifidobacterium; Probiotic; Bacteria; Genetics; Lactobacillus","score_opus":0.024895638398697746,"score_gpt":0.2413232078236396,"score_spread":0.21642756942494187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399529977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875116,0.00071764796,0.00024348809,0.000043904598,0.000014901064,0.00004130769,0.000047558875,0.000008819288,0.00013118895],"genre_scores_gemma":[0.99830663,0.00041313667,0.00076477433,0.00007641145,0.000018490318,0.000049617574,0.00010023341,0.00000419617,0.00026647744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99966264,0.00013874398,0.000030320098,0.000075067874,0.00005254845,0.000040777897],"domain_scores_gemma":[0.99940467,0.00010599676,0.000303927,0.000056126348,0.000035866397,0.0000934637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006958897,0.00024384145,0.00048119543,0.0001095932,0.0001651185,0.00023385651,0.00013189865,0.00020526959,0.0006660526],"category_scores_gemma":[0.00052131194,0.00013188556,0.0003120081,0.00011445511,0.0002679024,0.00016725884,0.00018157455,0.00049879303,0.00006771831],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.16471988,0.0073094605,0.04071953,0.0012714427,0.001307942,0.00011690999,0.00019630509,0.0006041095,0.69230306,0.0000729802,0.00041479888,0.09096353],"study_design_scores_gemma":[0.0045103226,0.32919827,0.5756588,0.00008488525,0.00082878565,0.00029611733,0.0002228113,0.0009100833,0.08595278,0.00011209705,0.0021923576,0.000032791475],"about_ca_topic_score_codex":0.00054215215,"about_ca_topic_score_gemma":0.001253572,"teacher_disagreement_score":0.0006958897,"about_ca_system_score_codex":0.00016987856,"about_ca_system_score_gemma":0.00022339252,"threshold_uncertainty_score":0.0036802292},"labels":[],"label_agreement":null},{"id":"W4400164948","doi":"10.1080/19490976.2024.2370917","title":"Gut microbiota-mediated polyphenol metabolism is restrained by parasitic whipworm infection and associated with altered immune function in mice","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"University of Glasgow","keywords":"Biology; Cecum; Gut flora; Immune system; Microbiology; Heligmosomoides polygyrus; Inflammation; Immunity; Microbiome; Barrier function; Immunology; Cell biology","score_opus":0.005588380118934808,"score_gpt":0.22746927433583955,"score_spread":0.22188089421690474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400164948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933262,0.0013397322,0.002286786,0.00026819442,0.000045747256,0.00006454314,0.0011112683,0.0002409933,0.0013166933],"genre_scores_gemma":[0.9863755,0.001658035,0.0031562655,0.00030406352,0.000024079329,0.00021352367,0.0010779063,0.0000936934,0.0070969225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996593,0.000051552248,0.00002600031,0.000096365475,0.00006114781,0.00010570151],"domain_scores_gemma":[0.99973613,0.000016017695,0.000097781936,0.000031516458,0.000016150838,0.0001024144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027533056,0.0007815362,0.00044270567,0.001061985,0.0003010876,0.0004965764,0.0003203444,0.00071422604,0.0015903338],"category_scores_gemma":[0.00014318379,0.00036820702,0.00053242187,0.00037099,0.0006279303,0.0005113552,0.00037534177,0.0016324811,0.0004455912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019508954,0.00049653434,0.0009223678,0.00007798031,0.000020107476,0.0001285824,0.000056073295,0.00010327324,0.993049,0.00016983904,0.000108467706,0.002916849],"study_design_scores_gemma":[0.00039684953,0.0061659915,0.054424547,0.00007374077,0.0001704722,0.00081029604,0.00026333018,0.0034470535,0.9260834,0.0005749329,0.007541763,0.000047583333],"about_ca_topic_score_codex":0.00075301225,"about_ca_topic_score_gemma":0.0012640023,"teacher_disagreement_score":0.0015903338,"about_ca_system_score_codex":0.00046520153,"about_ca_system_score_gemma":0.00035102657,"threshold_uncertainty_score":0.005320251},"labels":[],"label_agreement":null},{"id":"W4400190069","doi":"10.1080/19490976.2024.2360233","title":"The gut microbiome in disorders of gut–brain interaction","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Gut microbiome; Microbiome; Gut–brain axis; Gut flora; Biology; Irritable bowel syndrome; Bioinformatics; Pathogenesis; Neuroscience; Immunology; Medicine; Psychiatry","score_opus":0.030220969675381532,"score_gpt":0.35941075461281957,"score_spread":0.32918978493743806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400190069","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001756886,0.9980848,0.00009043002,0.00044672278,0.00024053849,0.000004039637,0.0000176869,0.0000056597023,0.0009344488],"genre_scores_gemma":[0.001418261,0.9976102,0.00014197922,0.00022533863,0.00017033023,0.0000051776824,0.000024155312,0.0000010731287,0.00040340162],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99980646,0.000055727847,0.000027153703,0.000028227683,0.000058494195,0.000023851615],"domain_scores_gemma":[0.99972266,0.00015106749,0.00004344736,0.0000063898055,0.000055152344,0.000021148155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037989757,0.0006590315,0.00086108816,0.0014653082,0.00035420718,0.0011212054,0.00045017654,0.0010587999,0.0042163427],"category_scores_gemma":[0.0010050113,0.00014098267,0.0005860072,0.0011660602,0.00036349217,0.0008952232,0.0007655764,0.0011860264,0.001064125],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009912299,0.000047630725,0.00055795035,0.027913302,0.00022765578,0.0003108198,0.00017829247,0.0002497126,0.0011858385,0.0058183502,0.028860712,0.93455076],"study_design_scores_gemma":[0.000021524811,0.00011981831,0.0035447266,0.018148836,0.00033604194,0.0028972605,0.00023347732,0.00013745177,0.0004295886,0.004103577,0.96999824,0.000029538502],"about_ca_topic_score_codex":0.0014587797,"about_ca_topic_score_gemma":0.00242462,"teacher_disagreement_score":0.0042163427,"about_ca_system_score_codex":0.0004928645,"about_ca_system_score_gemma":0.001450639,"threshold_uncertainty_score":0.014105082},"labels":[],"label_agreement":null},{"id":"W4401517399","doi":"10.1080/19490976.2024.2379440","title":"Gene content, phage cycle regulation model and prophage inactivation disclosed by prophage genomics in the Helicobacter pylori Genome Project","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondo de Financiamiento de Centros de Investigación en Áreas Prioritarias; Fondo Nacional de Desarrollo Científico y Tecnológico; National Institute on Minority Health and Health Disparities; U.S. National Library of Medicine; National Institute of Environmental Health Sciences; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Cancer Institute; Horizon 2020; Comisión Nacional de Investigación Científica y Tecnológica; Ministry of Education; Universiti Malaya; Agencia Nacional de Investigación y Desarrollo; National Medical Research Council; Alberta Innovates; Fundação de Amparo à Pesquisa do Estado de São Paulo; Ministry of Science and Technology; Institut National Du Cancer; Ministry of Health, British Columbia; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Ministero della Salute; ArcticNet; Fundação para a Ciência e a Tecnologia; Ministry of Higher Education; Bundesministerium für Bildung und Forschung; National Research Foundation; European Commission; Universidad de Costa Rica; National Cancer Center; National Institutes of Health; Health Research; U.S. Department of Veterans Affairs","keywords":"Prophage; Biology; Genome; Genetics; Helicobacter pylori; Gene; Genomics; Comparative genomics; Whole genome sequencing; Bacteriophage; Escherichia coli","score_opus":0.018147352493014687,"score_gpt":0.23351612339528505,"score_spread":0.21536877090227036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401517399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92493445,0.0046487027,0.03839961,0.0003900731,0.000039945386,0.000055734014,0.026120389,0.001072543,0.0043385867],"genre_scores_gemma":[0.9258795,0.0019142474,0.022546493,0.00011371633,0.000028462699,0.00013802141,0.04848811,0.00018034686,0.0007111445],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999724,0.000049011396,0.000015851088,0.0001252289,0.00004510786,0.00004092233],"domain_scores_gemma":[0.99956983,0.00019298546,0.00007263235,0.00006183982,0.00006195032,0.000040686253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005138446,0.00040557398,0.00046490473,0.0013682748,0.00036493049,0.00083328475,0.00041056747,0.00034633794,0.00135692],"category_scores_gemma":[0.001545796,0.00017339297,0.00089372956,0.0016327772,0.0002913398,0.0005368118,0.0005176693,0.00048578053,0.00044616626],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016822687,0.00031974475,0.3981904,0.0030596799,0.00079357746,0.0010354985,0.0011265163,0.17962034,0.23147495,0.022008864,0.015041584,0.14564666],"study_design_scores_gemma":[0.00007805398,0.0003355647,0.3030729,0.00018876919,0.0005505226,0.0007792818,0.00051197625,0.60237163,0.022348719,0.036554832,0.03308615,0.00012157533],"about_ca_topic_score_codex":0.0043204357,"about_ca_topic_score_gemma":0.003316709,"teacher_disagreement_score":0.0043204357,"about_ca_system_score_codex":0.00047615083,"about_ca_system_score_gemma":0.00049681246,"threshold_uncertainty_score":0.008590579},"labels":[],"label_agreement":null},{"id":"W4401517773","doi":"10.1080/19490976.2024.2388801","title":"Porphyromonas gingivalis fuels colorectal cancer through CHI3L1-mediated iNKT cell-driven immune evasion","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; Associazione Italiana per la Ricerca sul Cancro; Ministry of Health, British Columbia; Ministero della Salute; European Commission","keywords":"Porphyromonas gingivalis; Biology; Cytotoxic T cell; Immune system; Fusobacterium nucleatum; Immunology; Tumor microenvironment; Cancer research; Microbiology; In vitro; Bacteria","score_opus":0.010295936966319074,"score_gpt":0.24250922290901636,"score_spread":0.23221328594269727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401517773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897166,0.004621738,0.0016235,0.0005837495,0.00009069165,0.000027363909,0.00026319595,0.0002249247,0.0028482133],"genre_scores_gemma":[0.9966421,0.00078258547,0.0005860095,0.00008927052,0.000017980428,0.000014131669,0.000112337184,0.000015236583,0.0017403912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989986,0.000016048836,0.00000599209,0.000015157538,0.000025228435,0.00003763097],"domain_scores_gemma":[0.999944,0.000005552894,0.000021748236,0.0000055356672,0.0000054704965,0.000017795986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010851027,0.00026860138,0.00018699783,0.00018586779,0.00013608628,0.00033338618,0.00008111478,0.00024043785,0.0015261772],"category_scores_gemma":[0.000099765784,0.000068694775,0.00016178828,0.00012669788,0.0002467699,0.00015940923,0.00019587517,0.0005323064,0.00031278515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005084543,0.000055622073,0.0012371163,0.000072648225,0.0000059685694,0.00013954374,0.000018139519,0.00009578963,0.99293447,0.00011654812,0.00025590864,0.0045598224],"study_design_scores_gemma":[0.00003697773,0.00088527286,0.02370738,0.000016806802,0.00002763246,0.0008204757,0.00013314212,0.0015368332,0.96553546,0.0003193499,0.006973075,0.0000075924727],"about_ca_topic_score_codex":0.0007319776,"about_ca_topic_score_gemma":0.0012542749,"teacher_disagreement_score":0.0015261772,"about_ca_system_score_codex":0.00032532323,"about_ca_system_score_gemma":0.00025016267,"threshold_uncertainty_score":0.005105555},"labels":[],"label_agreement":null},{"id":"W4401715798","doi":"10.1080/19490976.2024.2390135","title":"Microbiota and plasticity of antigen-presenting ILC3s: impact on antitumor immune response","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Health, British Columbia; Ministero dell’Istruzione, dell’Università e della Ricerca; Ministero della Salute; Ministry of Education","keywords":"Biology; Innate lymphoid cell; Immune system; Immunology; Major histocompatibility complex; Crosstalk; Acquired immune system; Context (archaeology); Cancer immunotherapy; Antigen presentation; Antigen; Antigen-presenting cell; Gut flora; Immunotherapy; T cell","score_opus":0.0306448806691691,"score_gpt":0.3242353535981651,"score_spread":0.293590472928996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401715798","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017397697,0.9988611,0.00009867851,0.00022859311,0.00016475862,0.0000020334035,0.000012888104,0.0000059225686,0.00045198377],"genre_scores_gemma":[0.0010959523,0.9978671,0.00013312552,0.00017868831,0.00020252269,0.000004993923,0.000027424676,0.0000013154557,0.000488835],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99989474,0.000017760083,0.000015593843,0.000019988089,0.00003781919,0.000014158087],"domain_scores_gemma":[0.99984205,0.00006256224,0.000025601723,0.0000047388517,0.000043628315,0.000021401405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035765735,0.00063409406,0.00080775033,0.0010309642,0.00013415367,0.0007118793,0.00047955083,0.0007970116,0.002001237],"category_scores_gemma":[0.00040784967,0.00018655491,0.0002742164,0.0009474322,0.000293588,0.0006803572,0.000520616,0.0013599026,0.0013237668],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014039878,0.00005678464,0.00028945517,0.008611404,0.00006983897,0.00017448317,0.00003439705,0.00031987194,0.00363443,0.0025042805,0.021071116,0.9630935],"study_design_scores_gemma":[0.000027079004,0.00015901076,0.002005134,0.0022992736,0.0001263422,0.0015048413,0.00004845874,0.00015070895,0.0011875331,0.0016907899,0.9907811,0.000019764773],"about_ca_topic_score_codex":0.00045767025,"about_ca_topic_score_gemma":0.00083567173,"teacher_disagreement_score":0.002001237,"about_ca_system_score_codex":0.0004076242,"about_ca_system_score_gemma":0.00060859777,"threshold_uncertainty_score":0.0066947937},"labels":[],"label_agreement":null},{"id":"W4401728748","doi":"10.1080/19490976.2024.2387796","title":"Dietary fiber for the prevention of childhood obesity: a focus on the involvement of the gut microbiota","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Science Foundation of Fujian Province; National Natural Science Foundation of China","keywords":"Gut flora; Obesity; Childhood obesity; Cochrane Library; Gut microbiome; Biology; Psychological intervention; Overweight; Gut bacteria; Microbiome; MEDLINE; Bioinformatics; Medicine; Immunology; Endocrinology","score_opus":0.0350612635788952,"score_gpt":0.30911517527614113,"score_spread":0.2740539116972459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401728748","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000783079,0.99930084,0.00004428035,0.00017677866,0.00010490063,0.0000045836805,0.000019212956,0.0000027638264,0.000268372],"genre_scores_gemma":[0.00048531228,0.99904853,0.00012740107,0.00013749668,0.000051804444,0.0000067159563,0.000018241555,0.000001230451,0.0001232552],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99951875,0.000116463154,0.000101038764,0.00007935412,0.00014630142,0.000038048536],"domain_scores_gemma":[0.99907446,0.0006408693,0.00012404531,0.000021131278,0.00010634999,0.00003302323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011161121,0.00096989376,0.002289663,0.003177349,0.00025374212,0.0012849058,0.00082278455,0.0015121455,0.0048107184],"category_scores_gemma":[0.002074853,0.00025469466,0.0015364586,0.0024448482,0.00045809493,0.0010858544,0.0008404007,0.0017579868,0.0010175738],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019391517,0.000074377225,0.00027990414,0.16953216,0.0007499386,0.0001316239,0.00009473103,0.00020423283,0.0010766328,0.004072523,0.011003139,0.8125868],"study_design_scores_gemma":[0.00011900362,0.0002941946,0.0044881636,0.14936328,0.002967089,0.0011976834,0.00020369617,0.0001188276,0.0009317689,0.0041292794,0.8361382,0.00004877261],"about_ca_topic_score_codex":0.0022870405,"about_ca_topic_score_gemma":0.0029628023,"teacher_disagreement_score":0.0048107184,"about_ca_system_score_codex":0.0006774595,"about_ca_system_score_gemma":0.001802613,"threshold_uncertainty_score":0.016093493},"labels":[],"label_agreement":null},{"id":"W4401751373","doi":"10.1080/19490976.2024.2387857","title":"Proteolytic bacteria expansion during colitis amplifies inflammation through cleavage of the external domain of PAR2","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Blood Coagulation and Thrombosis Mechanisms","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"European Research Council; Canadian Institutes of Health Research; AstraZeneca; Agence Nationale de la Recherche; Deutsche Forschungsgemeinschaft; CHIST-ERA; McMaster University","keywords":"Proteases; Protease; Colitis; Biology; Proteolytic enzymes; Inflammation; Microbiology; Proteolysis; Receptor; Immunology; Cell biology; Biochemistry; Enzyme","score_opus":0.015807187200509238,"score_gpt":0.25761762282926687,"score_spread":0.24181043562875762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401751373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944149,0.001155781,0.0031244622,0.000120776116,0.000018204631,0.000015577976,0.00006175603,0.00003471237,0.0010536758],"genre_scores_gemma":[0.9977118,0.00041317925,0.0012784917,0.000050993705,0.00001879727,0.000009972924,0.000066682864,0.0000062744593,0.00044381976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997068,0.00008153478,0.000019336738,0.00005275162,0.00005535798,0.000084188156],"domain_scores_gemma":[0.9997675,0.000021273487,0.00011290633,0.000020557713,0.000014948852,0.00006293245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024711553,0.00027653546,0.00025516693,0.0002362306,0.00011644658,0.0003239642,0.00010591294,0.0002606716,0.0011706521],"category_scores_gemma":[0.00019125907,0.000089074136,0.0002520353,0.00010245899,0.00026972566,0.0002520485,0.000253844,0.00057657,0.00018059966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030366963,0.000021418962,0.00084872544,0.000024667395,0.000006405547,0.00019263155,0.000016945216,0.000022200584,0.99712425,0.00010271537,0.00003226641,0.0013040861],"study_design_scores_gemma":[0.00007642806,0.0019121526,0.098252125,0.000021885733,0.000069007765,0.003716114,0.00014374337,0.0016539546,0.8907356,0.00030215216,0.003104192,0.000012508407],"about_ca_topic_score_codex":0.00010476193,"about_ca_topic_score_gemma":0.00013990102,"teacher_disagreement_score":0.0011706521,"about_ca_system_score_codex":0.00014742206,"about_ca_system_score_gemma":0.00009197424,"threshold_uncertainty_score":0.0039162636},"labels":[],"label_agreement":null},{"id":"W4401895992","doi":"10.1080/19490976.2024.2394248","title":"Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institutes of Health","keywords":"Human virome; Microbiome; Biology; Metagenomics; Immunology; Dysbiosis; Human immunodeficiency virus (HIV); Virology; Genetics; Gene","score_opus":0.003343217577167916,"score_gpt":0.2214961955074591,"score_spread":0.2181529779302912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401895992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987827,0.0005092552,0.00017883128,0.000040092116,0.000004286643,0.000004062915,0.00030534397,0.0000030331032,0.00017238184],"genre_scores_gemma":[0.99872595,0.00030919656,0.00027277763,0.00004914773,0.0000064332735,0.000016248492,0.00040440218,0.0000037114983,0.00021212663],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99971765,0.00010402497,0.000012561857,0.0000743389,0.000023953071,0.00006748446],"domain_scores_gemma":[0.99973243,0.00007368597,0.000092730945,0.000029951865,0.000028788443,0.000042413478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040015153,0.0002224507,0.0003408673,0.00024626523,0.00027955268,0.00047394444,0.0001491597,0.0002788898,0.00073457917],"category_scores_gemma":[0.001368383,0.00020036659,0.00036444046,0.00034648576,0.00016478363,0.0002958206,0.0004930106,0.0003839883,0.00013717951],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005419425,0.000029535135,0.9821294,0.000041905256,0.00016930165,0.00022703294,0.0006728692,0.00021627014,0.0074594957,0.0000694965,0.000153355,0.0082894275],"study_design_scores_gemma":[0.0000024417345,0.00015916547,0.99722505,0.0000182021,0.000070545095,0.00019002688,0.00078164315,0.0004806853,0.0006114,0.00008848633,0.00036573663,0.0000066217194],"about_ca_topic_score_codex":0.0041760127,"about_ca_topic_score_gemma":0.006473023,"teacher_disagreement_score":0.0041760127,"about_ca_system_score_codex":0.0002484766,"about_ca_system_score_gemma":0.00029695453,"threshold_uncertainty_score":0.008303404},"labels":[],"label_agreement":null},{"id":"W4402573492","doi":"10.1080/19490976.2024.2399360","title":"Effect of diet on the gut mycobiome and potential implications in inflammatory bowel disease","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Biology; Inflammatory bowel disease; Disease; Gut flora; Irritable bowel syndrome; Food science; Biotechnology; Immunology; Internal medicine; Medicine","score_opus":0.009559477501672915,"score_gpt":0.3065761762381427,"score_spread":0.2970166987364698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402573492","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000103148974,0.99910235,0.000047320613,0.00018184187,0.00015311132,0.0000016845182,0.000011110095,0.0000033922868,0.00039606445],"genre_scores_gemma":[0.00049833057,0.9989366,0.000071079885,0.00012029587,0.00011004188,0.0000027672015,0.00001553291,7.24626e-7,0.00024464133],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99986124,0.000029659066,0.000022804592,0.000025307269,0.000047160236,0.000013759795],"domain_scores_gemma":[0.99974984,0.00013502174,0.00003441126,0.000005558883,0.000053615877,0.000021483638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039517885,0.000672505,0.0012267277,0.0016893125,0.00021052225,0.000788796,0.00062493165,0.0010040236,0.0033251592],"category_scores_gemma":[0.00073236064,0.00018287697,0.00048393762,0.0016197668,0.0003524776,0.00082427746,0.0006166088,0.001259891,0.0012869573],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014983972,0.000069856265,0.00023142608,0.022773664,0.00013796563,0.00021194403,0.00004625944,0.0002142077,0.0014072482,0.0020322285,0.01747149,0.9552539],"study_design_scores_gemma":[0.000029142431,0.00020177854,0.0022565876,0.008126804,0.00027242274,0.0019080912,0.000073345436,0.00009737796,0.00059722614,0.0022349062,0.9841756,0.00002668385],"about_ca_topic_score_codex":0.0007604452,"about_ca_topic_score_gemma":0.0014334911,"teacher_disagreement_score":0.0033251592,"about_ca_system_score_codex":0.00042302435,"about_ca_system_score_gemma":0.00067178695,"threshold_uncertainty_score":0.011123776},"labels":[],"label_agreement":null},{"id":"W4403104742","doi":"10.1080/19490976.2024.2409207","title":"Sex-specific post-inflammatory dysbiosis mediates chronic visceral pain in colitis","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotchkiss Brain Institute; Alberta Children's Hospital; University of Calgary","funders":"International Microbiome Centre, University of Calgary; Canterbury Medical Research Foundation; Crohn's and Colitis Canada; Canadian Institutes of Health Research; Mitacs; Canada Foundation for Innovation","keywords":"Dysbiosis; Biology; Colitis; Inflammatory bowel disease; Irritable bowel syndrome; Visceral pain; Immunology; Inflammation; Inflammatory Bowel Diseases; Bioinformatics; Gut flora; Disease; Internal medicine; Genetics; Medicine; Receptor","score_opus":0.005093320089069868,"score_gpt":0.22925461836668448,"score_spread":0.2241612982776146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403104742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98551184,0.010265165,0.0016319613,0.00027246578,0.00008437844,0.0000342984,0.0005109085,0.000047519803,0.0016414467],"genre_scores_gemma":[0.99325895,0.0038502705,0.0006250503,0.000150781,0.0000588042,0.000041757794,0.00032791344,0.000014177084,0.0016723418],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99985874,0.000030477157,0.000007628574,0.00003307854,0.000031166448,0.000038921182],"domain_scores_gemma":[0.9997249,0.000027274762,0.00013475622,0.000018615034,0.000023311104,0.00007103959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022447479,0.00028569848,0.00032429022,0.00022883371,0.00016681399,0.00039605418,0.00018266124,0.00033058863,0.0028726524],"category_scores_gemma":[0.00025264785,0.00011498446,0.00025191085,0.00012690586,0.00028421215,0.00020253708,0.00027907547,0.0004245249,0.0003642326],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003133188,0.00023176483,0.04171101,0.00044899873,0.0000877967,0.0006210052,0.00014665397,0.00011758696,0.92557406,0.00048535652,0.0005125255,0.026929958],"study_design_scores_gemma":[0.000108613574,0.0034559367,0.8719003,0.00016371968,0.00021250664,0.0026215257,0.00044055062,0.0009879363,0.11178225,0.0007167395,0.0075694225,0.000040320923],"about_ca_topic_score_codex":0.000163036,"about_ca_topic_score_gemma":0.00034928473,"teacher_disagreement_score":0.0028726524,"about_ca_system_score_codex":0.00015152403,"about_ca_system_score_gemma":0.00018998768,"threshold_uncertainty_score":0.009609938},"labels":[],"label_agreement":null},{"id":"W4403104824","doi":"10.1080/19490976.2024.2410476","title":"Relevance of gut microbiome research in food safety assessment","year":2024,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute; Health Canada","funders":"Instituto de Salud Carlos III; European Commission; European Food Safety Authority","keywords":"Biology; Gut microbiome; Microbiome; Relevance (law); Food safety; Environmental health; Biotechnology; Bioinformatics; Food science; Medicine","score_opus":0.14326837025001124,"score_gpt":0.4044646335797301,"score_spread":0.2611962633297189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403104824","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014764206,0.9973743,0.00034738003,0.0008764563,0.0002962622,0.0000062310855,0.000026368369,0.0000065786585,0.0009187711],"genre_scores_gemma":[0.0017102315,0.9964964,0.0005864888,0.0004658764,0.00025899356,0.00001073092,0.00003214654,0.0000026598861,0.00043655632],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990534,0.0003310731,0.00009394961,0.0001468184,0.00031636382,0.000058365025],"domain_scores_gemma":[0.9971891,0.0018489044,0.00023030369,0.00007488312,0.00056887645,0.00008791195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002392763,0.0009113442,0.0015154319,0.0024146813,0.00036673286,0.002093688,0.00081511546,0.0021952968,0.0037975572],"category_scores_gemma":[0.003868393,0.00026609655,0.0012422777,0.0020827053,0.0008815583,0.0021167828,0.0012329163,0.0025905087,0.0011964901],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073723764,0.00006446916,0.00056093757,0.03601992,0.0002091859,0.00020807328,0.00016727962,0.0006256455,0.0022593772,0.011811916,0.01484832,0.9331511],"study_design_scores_gemma":[0.0000131039305,0.00014056932,0.0023318483,0.020126224,0.0003219281,0.0009743813,0.00030178847,0.00021925302,0.0012041741,0.009829623,0.96449226,0.000044768174],"about_ca_topic_score_codex":0.0019730427,"about_ca_topic_score_gemma":0.0024885884,"teacher_disagreement_score":0.0037975572,"about_ca_system_score_codex":0.00093402766,"about_ca_system_score_gemma":0.002945695,"threshold_uncertainty_score":0.012704134},"labels":[],"label_agreement":null},{"id":"W4403451189","doi":"10.1080/19490976.2024.2412676","title":"Giardia spp.-induced microbiota dysbiosis disrupts intestinal mucin glycosylation","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; International Microbiome Centre, University of Calgary; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canterbury Medical Research Foundation","keywords":"Biology; Dysbiosis; Mucin; Microbiology; Giardia; Glycosylation; Gut flora; Mucin 2; Microbiome; Immunology; Genetics; Biochemistry; Gene","score_opus":0.012043707878262453,"score_gpt":0.2620476934321817,"score_spread":0.25000398555391923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403451189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99408674,0.001518978,0.0017538012,0.00018768193,0.00003908799,0.000027696764,0.0003030586,0.00011650168,0.001966491],"genre_scores_gemma":[0.9943797,0.0009055185,0.0017436026,0.00013170976,0.000013190578,0.000026044298,0.0004099784,0.000026368467,0.0023638706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998913,0.000023593346,0.000007387173,0.000024616607,0.000018756355,0.00003434321],"domain_scores_gemma":[0.9998987,0.000011917453,0.0000457824,0.000010051516,0.000011300911,0.000022267683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012066402,0.00035254145,0.00018630728,0.0002282506,0.00009708818,0.00025699052,0.000119173725,0.00025965067,0.0006917198],"category_scores_gemma":[0.00010583218,0.00009634447,0.00017832656,0.00013082055,0.0002724641,0.00014249842,0.00019950511,0.0005086632,0.00021113716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117439704,0.000015291285,0.00036498063,0.000020655692,0.000003190741,0.00006329575,0.000007596261,0.000018025064,0.99851424,0.000047681686,0.000053655942,0.0007738867],"study_design_scores_gemma":[0.000015435928,0.0007038054,0.049651492,0.000014800819,0.000021965381,0.00071727275,0.0000668866,0.00086319377,0.9448388,0.00009937925,0.0030005183,0.000006410837],"about_ca_topic_score_codex":0.00062859437,"about_ca_topic_score_gemma":0.0007479064,"teacher_disagreement_score":0.0006917198,"about_ca_system_score_codex":0.00030877226,"about_ca_system_score_gemma":0.00014342197,"threshold_uncertainty_score":0.0023140311},"labels":[],"label_agreement":null},{"id":"W4403615294","doi":"10.1080/19490976.2024.2413372","title":"Inflammasome activation links enteric Salmonella Typhimurium infection to a rapid, cytokine-dependent increase in intestinal mucin release","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; BC Children's Hospital; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; CH.I.L.D. Foundation; National Institutes of Health; Crohn's and Colitis Canada; Michael Smith Health Research BC","keywords":"Inflammasome; Biology; Salmonella; Mucin; Microbiology; Cytokine; Mucin 2; Enterobacteriaceae; Enteric virus; Immunology; Bacteria; Inflammation; Escherichia coli; Gene expression; Gene; Genetics","score_opus":0.005699828508020702,"score_gpt":0.22777980126123853,"score_spread":0.22207997275321784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403615294","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853829,0.0058268113,0.00545708,0.00040464618,0.00010097938,0.00004418915,0.00049950054,0.00019109996,0.0020926136],"genre_scores_gemma":[0.99333125,0.0027040925,0.002234751,0.00015174873,0.000030026724,0.00002866501,0.00036557246,0.000019475046,0.0011342402],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998342,0.000034996803,0.00002016474,0.0000434811,0.000026820904,0.000040321083],"domain_scores_gemma":[0.9998229,0.00001017182,0.000103419436,0.000011929615,0.000015101314,0.000036479178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027371646,0.00044960485,0.0002229127,0.00027354792,0.000117888616,0.0004899262,0.00010870612,0.00039111546,0.00127693],"category_scores_gemma":[0.00018208235,0.00015014819,0.0003364734,0.000118655065,0.00037917378,0.00030197564,0.00036129804,0.0005868498,0.0002959701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030932014,0.000024751995,0.0006571069,0.00008325619,0.000008961141,0.00018425276,0.000022809565,0.000040187184,0.99709666,0.00011386623,0.000061760045,0.0013971388],"study_design_scores_gemma":[0.00007983816,0.0018748511,0.053308386,0.00006543476,0.0000690108,0.0037109111,0.00021697088,0.0012566451,0.9332533,0.0005794499,0.005566367,0.000018826582],"about_ca_topic_score_codex":0.00015386374,"about_ca_topic_score_gemma":0.0002563787,"teacher_disagreement_score":0.00127693,"about_ca_system_score_codex":0.0002608986,"about_ca_system_score_gemma":0.00018451325,"threshold_uncertainty_score":0.0042718053},"labels":[],"label_agreement":null},{"id":"W4403615806","doi":"10.1080/19490976.2024.2414975","title":"Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; Fred Hutchinson Cancer Research Center","keywords":"Biology; Subspecies; Microbiology; Human health; Zoology; Environmental health; Medicine","score_opus":0.041418828305432746,"score_gpt":0.30995129179245157,"score_spread":0.2685324634870188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403615806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99367225,0.001878828,0.0013057662,0.000057057543,0.000009790669,0.00001920226,0.0026272677,0.000018784382,0.00041104277],"genre_scores_gemma":[0.991118,0.0007797166,0.0036088263,0.00006488031,0.000013713257,0.00004844111,0.004124083,0.000019671435,0.00022256681],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99946517,0.00009278656,0.00005325195,0.00021436156,0.00009201209,0.00008244796],"domain_scores_gemma":[0.99922943,0.00016990995,0.0002604609,0.00009296314,0.00014798906,0.0000992597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070072146,0.0002614589,0.00042830152,0.0013564128,0.0003643741,0.0006473183,0.00019744804,0.0003195705,0.0007988239],"category_scores_gemma":[0.0017873641,0.00017255444,0.00046722117,0.0012314235,0.00026522626,0.00037535932,0.0008538747,0.00033080933,0.0002891049],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000517379,0.00006977965,0.7399662,0.00031957406,0.00032016065,0.00022814829,0.000842214,0.00058797054,0.2357811,0.00024142808,0.00049622694,0.020629799],"study_design_scores_gemma":[0.00000980355,0.00017331511,0.98459446,0.000052907395,0.00013573685,0.0006546292,0.00049738673,0.0014056797,0.009866471,0.0003075301,0.0022793545,0.000022675815],"about_ca_topic_score_codex":0.0017636745,"about_ca_topic_score_gemma":0.0022973553,"teacher_disagreement_score":0.0017636745,"about_ca_system_score_codex":0.00016618546,"about_ca_system_score_gemma":0.00030439178,"threshold_uncertainty_score":0.0037058592},"labels":[],"label_agreement":null},{"id":"W4404423277","doi":"10.1080/19490976.2024.2428848","title":"Prebiotics in food and dietary supplements: a roadmap to EU health claims","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Intertek (Canada)","funders":"International Life Sciences Institute","keywords":"Biology; Health claims on food labels; Biotechnology; Food science; Health benefits; Dietary supplement; Environmental health; Traditional medicine; Medicine","score_opus":0.01655651541096009,"score_gpt":0.3003616082638011,"score_spread":0.283805092852841,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404423277","genre_codex":"commentary","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023828002,0.22554512,0.04753815,0.4939388,0.012036598,0.000848163,0.0010684773,0.00087189476,0.1943248],"genre_scores_gemma":[0.28368643,0.2094367,0.21314205,0.23492174,0.0076874415,0.0027025566,0.003247805,0.0006454797,0.044529755],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.956042,0.018575156,0.006983937,0.003074433,0.012555013,0.0027694225],"domain_scores_gemma":[0.91877913,0.05272636,0.0062342426,0.0060530505,0.0125787705,0.003628382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.07193482,0.0011720569,0.0023923304,0.0041880985,0.0028926302,0.013549194,0.0039197393,0.019577904,0.015090405],"category_scores_gemma":[0.06504649,0.00085819094,0.0024952402,0.0032242246,0.0074481894,0.017184382,0.012773539,0.0117211295,0.0027776172],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050067954,0.0006482704,0.0012641499,0.004776435,0.00006181452,0.00080699835,0.002737459,0.0007882689,0.0057173804,0.57380646,0.03950473,0.36938742],"study_design_scores_gemma":[0.00010509529,0.000818407,0.002683146,0.0077169104,0.0000693581,0.00046310422,0.0026609846,0.0004829522,0.002782107,0.15776482,0.8243631,0.00008991352],"about_ca_topic_score_codex":0.0024540222,"about_ca_topic_score_gemma":0.001743753,"teacher_disagreement_score":0.07193482,"about_ca_system_score_codex":0.005125849,"about_ca_system_score_gemma":0.022870565,"threshold_uncertainty_score":0.38043225},"labels":[],"label_agreement":null},{"id":"W4404622625","doi":"10.1080/19490976.2024.2430424","title":"Butyrate reduces epithelial barrier dysfunction induced by the foodborne mycotoxin deoxynivalenol in cell monolayers derived from pig jejunum organoids","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Région Occitanie Pyrénées-Méditerranée","keywords":"Mycotoxin; Biology; Microbiology; Butyrate; Jejunum; Organoid; Food science; Biochemistry; Fermentation; Cell biology","score_opus":0.010363397688620305,"score_gpt":0.19302937980685994,"score_spread":0.18266598211823964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404622625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923207,0.0032596136,0.0024286595,0.00020324622,0.00009553215,0.000037068356,0.00037072087,0.00002969405,0.0012546105],"genre_scores_gemma":[0.99287605,0.0016441835,0.001847466,0.00011913657,0.000012445089,0.000041781248,0.00065871474,0.000015180353,0.0027850727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99974614,0.000077505574,0.0000326825,0.00004295206,0.00005075103,0.000049946102],"domain_scores_gemma":[0.99988985,0.000025252808,0.000024333167,0.000020599007,0.000020186682,0.000019881074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023267065,0.0003663361,0.0004411642,0.00017299481,0.00019066877,0.00036692555,0.00017937672,0.00040473472,0.001068438],"category_scores_gemma":[0.00012988622,0.00015963892,0.0003464988,0.00013404358,0.00018174325,0.0003778455,0.00030130384,0.00060604425,0.0002753941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017774077,0.000027044252,0.00012519337,0.000035951718,0.000004377957,0.000029354273,0.000017353974,0.000021856244,0.99914205,0.000011577837,0.000011031404,0.00039648],"study_design_scores_gemma":[0.000016355918,0.0008891995,0.0049567684,0.000011981055,0.000029356568,0.00010766704,0.000118662574,0.0003825601,0.99147636,0.000022286917,0.0019842386,0.0000046671116],"about_ca_topic_score_codex":0.0010063872,"about_ca_topic_score_gemma":0.0017445983,"teacher_disagreement_score":0.001068438,"about_ca_system_score_codex":0.00020861739,"about_ca_system_score_gemma":0.00021004165,"threshold_uncertainty_score":0.0035743117},"labels":[],"label_agreement":null},{"id":"W4404696887","doi":"10.1080/19490976.2024.2431167","title":"Transcriptional profiling of zebrafish intestines identifies macrophages as host cells for human norovirus infection","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Science and Engineering Research Council; Natural Sciences and Engineering Research Council of Canada; European Commission; Vlaamse regering; KU Leuven; Fonds Wetenschappelijk Onderzoek; Alberta Innovates","keywords":"Biology; Norovirus; Zebrafish; Virology; Gene expression profiling; Murine norovirus; Host (biology); Microbiology; Profiling (computer programming); Computational biology; Genetics; Virus; Gene; Gene expression","score_opus":0.031097518809918782,"score_gpt":0.35206797356383013,"score_spread":0.32097045475391134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404696887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99247414,0.0010773002,0.0037998622,0.000079177036,0.000012247665,0.000035065976,0.0011478447,0.00005546828,0.001318826],"genre_scores_gemma":[0.99236155,0.0007240972,0.0037419375,0.000084411346,0.0000091465035,0.00005205091,0.0009764607,0.000020300069,0.0020301824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999918,0.000008150105,0.000003512873,0.000025387511,0.00001919679,0.000025866815],"domain_scores_gemma":[0.99995077,0.00001044883,0.000014632412,0.0000037050484,0.000011277802,0.000009112893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001160618,0.0001519384,0.00013748095,0.00031752756,0.00017055927,0.00019248153,0.000074346644,0.00014367355,0.00067349983],"category_scores_gemma":[0.00014125259,0.00010272391,0.00013823154,0.00011010794,0.00017106612,0.00009102876,0.00021147262,0.0001998823,0.0001819796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007728717,0.0000036906404,0.0026377607,0.000018373146,0.0000018903504,0.000030606745,0.00004555923,0.000030765885,0.9961117,0.00004829419,0.000026283478,0.0009677574],"study_design_scores_gemma":[0.000025867404,0.0005369554,0.2423646,0.0000470515,0.000064405926,0.0005357554,0.00076465186,0.002990453,0.7468085,0.0002987447,0.005541503,0.00002143461],"about_ca_topic_score_codex":0.0020713885,"about_ca_topic_score_gemma":0.0040864004,"teacher_disagreement_score":0.0020713885,"about_ca_system_score_codex":0.00023078051,"about_ca_system_score_gemma":0.00021197385,"threshold_uncertainty_score":0.0041186213},"labels":[],"label_agreement":null},{"id":"W4405647530","doi":"10.1080/19490976.2024.2442528","title":"T cells regulate intestinal motility and shape enteric neuronal responses to intestinal microbiota","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gastrointestinal motility and disorders","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute; Hotchkiss Brain Institute; University of Calgary","funders":"Canadian Institutes of Health Research; Cumming School of Medicine, University of Calgary; International Microbiome Centre, University of Calgary; Crohn's and Colitis Canada","keywords":"Enteric nervous system; Biology; Immune system; Neurogenesis; Ileum; Immunology; Gut flora; Intestinal mucosa; T cell; Cell biology; Microbiology; Internal medicine; Neuroscience; Endocrinology","score_opus":0.01713982604416583,"score_gpt":0.26255530238229596,"score_spread":0.24541547633813013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405647530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954086,0.00206303,0.0013234572,0.00007674992,0.000016665002,0.000011241241,0.00013633467,0.000037220034,0.0009267438],"genre_scores_gemma":[0.9948549,0.0020192,0.0017634389,0.00005741936,0.000025391268,0.000025085017,0.00011746347,0.0000142478975,0.0011227416],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99989307,0.000017204626,0.0000067812807,0.000025325604,0.000017389342,0.00004016571],"domain_scores_gemma":[0.99989986,0.00000919317,0.000031873795,0.000006070319,0.00001458181,0.000038469723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009687298,0.00035564607,0.00023455184,0.00023857898,0.0001373929,0.00033989607,0.00014777294,0.00031327517,0.00080448407],"category_scores_gemma":[0.00012357203,0.000114246286,0.0002733008,0.00011638653,0.00036895333,0.00035966103,0.000271895,0.00061223184,0.00019941667],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029779488,0.000021706783,0.0023024757,0.000056424593,0.0000062369636,0.00011225299,0.000057701,0.000134505,0.9929381,0.00013124854,0.000052907315,0.0038886606],"study_design_scores_gemma":[0.00014250628,0.0019023204,0.17935255,0.00009577406,0.00012624032,0.00086670375,0.001249799,0.003743036,0.80517834,0.0011823558,0.006121449,0.00003890785],"about_ca_topic_score_codex":0.00046724605,"about_ca_topic_score_gemma":0.0010533655,"teacher_disagreement_score":0.00080448407,"about_ca_system_score_codex":0.00017924591,"about_ca_system_score_gemma":0.00017100236,"threshold_uncertainty_score":0.002691269},"labels":[],"label_agreement":null},{"id":"W4405688854","doi":"10.1080/19490976.2024.2438823","title":"Multifunctional dietary approach reduces intestinal inflammation in relation with changes in gut microbiota composition in subjects at cardiometabolic risk: the SINFONI project","year":2024,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Diet and metabolism studies","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Ministry of Higher Education; Agence Nationale de la Recherche","keywords":"Biology; Gut flora; Inflammation; Composition (language); Internal medicine; Immunology; Medicine","score_opus":0.020452493622203784,"score_gpt":0.2565034392315743,"score_spread":0.23605094560937054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405688854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979798,0.0011286767,0.00022563591,0.00012290961,0.000049141745,0.00013633326,0.00013446994,0.00001677301,0.00020627408],"genre_scores_gemma":[0.98838615,0.0027098416,0.0040666307,0.00037918275,0.00010284765,0.00075990066,0.00065043353,0.00001635242,0.0029286335],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.9998424,0.000060552127,0.000008437532,0.000041410836,0.000017443286,0.000029713714],"domain_scores_gemma":[0.9998342,0.00001578239,0.0000437061,0.000016344364,0.000020582233,0.0000693057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072452775,0.00066932436,0.0011047244,0.00032777767,0.000330478,0.0003396552,0.00025327515,0.0005538363,0.002905678],"category_scores_gemma":[0.00032425806,0.00021758654,0.0007474448,0.00018367807,0.00026421115,0.00023562349,0.00043709288,0.00070750446,0.00020362684],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.51608187,0.08752786,0.014764087,0.0024779474,0.0017820298,0.00017805398,0.0002924184,0.0006505064,0.20310725,0.00036191285,0.0022509035,0.17052515],"study_design_scores_gemma":[0.049121287,0.77155745,0.14068799,0.00040179762,0.0024059692,0.00028817932,0.00029045175,0.0019964664,0.024980467,0.00032130568,0.00787949,0.00006920107],"about_ca_topic_score_codex":0.00085881475,"about_ca_topic_score_gemma":0.0017612642,"teacher_disagreement_score":0.002905678,"about_ca_system_score_codex":0.00023017311,"about_ca_system_score_gemma":0.0005222741,"threshold_uncertainty_score":0.009720445},"labels":[],"label_agreement":null},{"id":"W4407383891","doi":"10.1080/19490976.2025.2458189","title":"MIIST305 mitigates gastrointestinal acute radiation syndrome injury and ameliorates radiation-induced gut microbiome dysbiosis","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"National Cancer Institute; National Institute of Allergy and Infectious Diseases; Columbia University","keywords":"Dysbiosis; Acute Radiation Syndrome; Microbiome; Biology; Gut flora; Gut microbiome; Bioinformatics; Cancer research; Immunology; Genetics","score_opus":0.0038043232524960927,"score_gpt":0.25350302470162794,"score_spread":0.24969870144913184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407383891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98997,0.004914785,0.0018813981,0.00026144242,0.00011732192,0.000085310305,0.0007054016,0.0003202563,0.0017439503],"genre_scores_gemma":[0.9868903,0.0040066405,0.0021687392,0.0003173391,0.000036953716,0.000109245026,0.001668353,0.000040009414,0.004762469],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986243,0.000018517316,0.000011321093,0.000019458223,0.00004420053,0.000043975335],"domain_scores_gemma":[0.9998832,0.0000063664074,0.000041214265,0.000008900317,0.000012995289,0.000047345493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019004801,0.0006612303,0.0006244667,0.0005782874,0.00017399798,0.00030237116,0.00036998533,0.0005288321,0.0021536415],"category_scores_gemma":[0.00013025632,0.00022072419,0.0004567513,0.00018512688,0.00025402437,0.00031098205,0.00026094267,0.0013804777,0.00039190074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028712628,0.0009346881,0.0009834906,0.00045291116,0.00007227212,0.000087606284,0.000045630906,0.00037653113,0.9790541,0.00016590318,0.0006390709,0.014316584],"study_design_scores_gemma":[0.00067168404,0.044846848,0.043501597,0.0002190646,0.00041793246,0.0007878842,0.00035659724,0.0030177077,0.8905547,0.00033878913,0.0152211,0.00006608201],"about_ca_topic_score_codex":0.0006238014,"about_ca_topic_score_gemma":0.001963206,"teacher_disagreement_score":0.0021536415,"about_ca_system_score_codex":0.00019481145,"about_ca_system_score_gemma":0.00044206085,"threshold_uncertainty_score":0.007204652},"labels":[],"label_agreement":null},{"id":"W4407707283","doi":"10.1080/19490976.2025.2463570","title":"Gut microbiome changes with micronutrient supplementation in children with attention–deficit/hyperactivity disorder: the MADDY study","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Diet and metabolism studies","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Lethbridge","funders":"Department of Psychiatry; National Center for Complementary and Integrative Health; National Center for Advancing Translational Sciences; Research Institute, Nationwide Children's Hospital; Ohio State University; Health Research; National Institutes of Health; Waterloo Foundation; Gratis Foundation; Foundation for Excellence in Mental Health Care; Nationwide Children's Hospital; Biotechnology and Biological Sciences Research Council; Oregon Health and Science University; Calgary Foundation","keywords":"Micronutrient; Gut microbiome; Attention deficit; Microbiome; Attention deficit hyperactivity disorder; Biology; Open peer review; Physiology; Bioinformatics; Plant biology; Medicine; Clinical psychology; Botany; Pathology","score_opus":0.0071973237937289925,"score_gpt":0.26073279333481186,"score_spread":0.25353546954108286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407707283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99668306,0.0021378098,0.000065654,0.00014693594,0.000021837039,0.000081299026,0.0005957345,0.000010800617,0.00025678411],"genre_scores_gemma":[0.9966086,0.0010102312,0.00061946694,0.0002246982,0.000027236172,0.00021258566,0.0007673697,0.000005695536,0.00052418746],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994056,0.00028262864,0.00006111259,0.00009154736,0.000076096985,0.00008300546],"domain_scores_gemma":[0.99944144,0.0000729492,0.00022506352,0.000056587083,0.000064804444,0.00013907504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009967069,0.00070991565,0.0011972699,0.0003138264,0.00058684783,0.00071444426,0.00035498873,0.0006457372,0.0007553573],"category_scores_gemma":[0.0013682982,0.00042391443,0.0009246538,0.000387266,0.00029470105,0.00029056225,0.00082492974,0.00088265893,0.000114055365],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.05796786,0.004186114,0.8484165,0.002189606,0.0045845406,0.0005636205,0.0019795217,0.00039582615,0.018809997,0.00015269383,0.0033696843,0.057384104],"study_design_scores_gemma":[0.0013361006,0.0072555984,0.9869878,0.00009997434,0.0010054593,0.00030742006,0.00034950042,0.0000990296,0.0008789872,0.000026176873,0.0016318918,0.000022093585],"about_ca_topic_score_codex":0.0057119676,"about_ca_topic_score_gemma":0.011119768,"teacher_disagreement_score":0.0057119676,"about_ca_system_score_codex":0.0007262356,"about_ca_system_score_gemma":0.0006099008,"threshold_uncertainty_score":0.011357427},"labels":[],"label_agreement":null},{"id":"W4408240885","doi":"10.1080/19490976.2025.2473524","title":"The gut-skin axis: a bi-directional, microbiota-driven relationship with therapeutic potential","year":2025,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Gut flora; Microbiology; Immunology","score_opus":0.023981880035332442,"score_gpt":0.3114169901561088,"score_spread":0.2874351101207764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408240885","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00015547946,0.997797,0.00016484669,0.0003911944,0.0003536313,0.0000048467077,0.000016232541,0.000008259534,0.0011085384],"genre_scores_gemma":[0.0010799542,0.9974962,0.00024600644,0.00030367312,0.0002244533,0.000008045068,0.000027419972,0.0000017796079,0.0006123643],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99985063,0.000033824617,0.000020213613,0.000027261234,0.00004869351,0.000019295194],"domain_scores_gemma":[0.99982786,0.000089680485,0.000021284432,0.000005325002,0.000036428602,0.000019354096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036159367,0.0006248435,0.0008711926,0.001257401,0.00025294308,0.0011045076,0.00048807342,0.0009396793,0.0043536983],"category_scores_gemma":[0.00058225036,0.0001505743,0.0004711571,0.0009009818,0.00034924145,0.0011236918,0.00064359966,0.0015424737,0.0013156577],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008506752,0.000068605164,0.00015714487,0.020125818,0.00009513501,0.00022643669,0.0000726662,0.0003102106,0.0032372226,0.0064735375,0.028816888,0.9403313],"study_design_scores_gemma":[0.000018469933,0.000138417,0.00068907003,0.004444177,0.000116469244,0.0014248971,0.000076108045,0.00009171702,0.00054255046,0.0023183404,0.9901252,0.000014504905],"about_ca_topic_score_codex":0.00041254083,"about_ca_topic_score_gemma":0.0009871616,"teacher_disagreement_score":0.0043536983,"about_ca_system_score_codex":0.00038262515,"about_ca_system_score_gemma":0.0007779759,"threshold_uncertainty_score":0.014564574},"labels":[],"label_agreement":null},{"id":"W4408497663","doi":"10.1080/19490976.2025.2477816","title":"Microbial micronutrient sharing, gut redox balance and keystone taxa as a basis for a new perspective to solutions targeting health from the gut","year":2025,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Biology; Microbiome; Gut flora; Dysbiosis; Keystone species; Micronutrient; Gut microbiome; Disease; Ecosystem; Metagenomics; Ecology; Bioinformatics; Immunology; Medicine; Genetics","score_opus":0.024707222529846327,"score_gpt":0.33920722154069055,"score_spread":0.31449999901084424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408497663","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024787763,0.7176865,0.059927665,0.16176836,0.009838992,0.000099375444,0.00044218346,0.00050021417,0.024949016],"genre_scores_gemma":[0.2401329,0.6345447,0.058609966,0.039244846,0.008525983,0.0002951956,0.0004204145,0.00021380768,0.01801228],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992099,0.00021434257,0.000043495285,0.00017474605,0.00021607622,0.0001414431],"domain_scores_gemma":[0.99911803,0.0002859878,0.00013071802,0.00007778593,0.00019080113,0.00019663434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001967929,0.0010262644,0.0018004314,0.0009696221,0.0010106354,0.00365274,0.0015063243,0.0034727543,0.005068583],"category_scores_gemma":[0.001575557,0.00032207798,0.00075579184,0.00072474737,0.0040368484,0.0071245343,0.003637369,0.005875298,0.0012762285],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008361744,0.00033312096,0.0033581548,0.007378742,0.00037928845,0.0012947791,0.0016576728,0.002437821,0.09884056,0.42559355,0.047460552,0.4104296],"study_design_scores_gemma":[0.000057753838,0.0007342444,0.002758325,0.0021124873,0.00022971851,0.0009853751,0.0023561353,0.0022368848,0.017456569,0.26771447,0.7032348,0.00012326296],"about_ca_topic_score_codex":0.0009902456,"about_ca_topic_score_gemma":0.0015839632,"teacher_disagreement_score":0.005068583,"about_ca_system_score_codex":0.0016274854,"about_ca_system_score_gemma":0.0030735882,"threshold_uncertainty_score":0.016956031},"labels":[],"label_agreement":null},{"id":"W4408542517","doi":"10.1080/19490976.2025.2479772","title":"Life-course socioeconomic position and the gut microbiome in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL)","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute on Minority Health and Health Disparities; National Institute of Dental and Craniofacial Research; National Institute of Diabetes and Digestive and Kidney Diseases; Institute of Aging; Northwestern University; National Heart, Lung, and Blood Institute; University of North Carolina; National Institute on Aging; National Institute of Environmental Health Sciences; University of Illinois at Chicago; San Diego State University; National Center on Minority Health and Health Disparities; National Human Genome Research Institute; University of Miami; Office of Dietary Supplements","keywords":"Biology; Microbiome; Socioeconomic status; Gut microbiome; Life course approach; Position (finance); Environmental health; Gerontology; Bioinformatics; Medicine; Psychology; Population","score_opus":0.008838751901136942,"score_gpt":0.2918421138346982,"score_spread":0.2830033619335613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408542517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99608165,0.00044532333,0.00014892542,0.00013236747,0.000011892741,0.000016869048,0.0023277656,0.00000444565,0.0008306931],"genre_scores_gemma":[0.9967128,0.0005311723,0.0002787087,0.00010248428,0.000017856988,0.000051373245,0.0019221394,0.0000048875777,0.00037850448],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997814,0.00007453063,0.000019826455,0.000045207955,0.00003439801,0.00004461301],"domain_scores_gemma":[0.9994924,0.00006001373,0.00020716657,0.000053568907,0.000052747153,0.00013404193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000570223,0.00021043053,0.00017288778,0.00063739595,0.0004710971,0.00056185055,0.00017708117,0.000262677,0.0013773469],"category_scores_gemma":[0.0011611218,0.0001420663,0.00027330234,0.0011610172,0.00019142564,0.00022488374,0.0005838912,0.000310143,0.00015404343],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000861279,0.0000367991,0.9973477,0.000016882583,0.000073709154,0.000044551594,0.00007858707,0.000019100702,0.00026306143,0.000029130924,0.0003051147,0.001699273],"study_design_scores_gemma":[0.000007916772,0.000037695438,0.9991591,0.000012685181,0.000027171753,0.000059459268,0.0001827566,0.000062864594,0.000066166576,0.000030068446,0.00035186278,0.0000023825703],"about_ca_topic_score_codex":0.011180815,"about_ca_topic_score_gemma":0.01360881,"teacher_disagreement_score":0.011180815,"about_ca_system_score_codex":0.00022599005,"about_ca_system_score_gemma":0.0003815744,"threshold_uncertainty_score":0.02223146},"labels":[],"label_agreement":null},{"id":"W4408660609","doi":"10.1080/19490976.2025.2476563","title":"Seasonal variations in circulating endocannabinoidome mediators and gut microbiota composition in humans","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval","funders":"","keywords":"Biology; Gut flora; Immunology","score_opus":0.004639225796773506,"score_gpt":0.2537400573705267,"score_spread":0.24910083157375318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408660609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99683917,0.0011363258,0.00022758888,0.00007223174,0.00001014632,0.000017144506,0.0011073428,0.000012049145,0.00057801686],"genre_scores_gemma":[0.99835205,0.00035933623,0.00032949995,0.000060446473,0.0000063079183,0.000015465657,0.00048117872,0.0000033765334,0.00039223031],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99988985,0.000018089291,0.000004417707,0.00004168542,0.000014475615,0.000031585765],"domain_scores_gemma":[0.9998147,0.000015044296,0.00006636146,0.000015861298,0.000044310847,0.0000436907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018168105,0.00016428663,0.00024443454,0.00039017847,0.00050781877,0.000330594,0.00017989638,0.00030563318,0.0010656497],"category_scores_gemma":[0.0003365555,0.00011794832,0.00016146574,0.0007051461,0.0002534167,0.00013345297,0.00014961368,0.00018726295,0.0001214536],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057117135,0.00004691819,0.98131585,0.000047155358,0.00015033736,0.00014681979,0.00028924196,0.000096038704,0.008074027,0.000040902327,0.00064535654,0.0085760355],"study_design_scores_gemma":[0.0000014773793,0.000019272875,0.999627,0.0000025281067,0.000007054907,0.000038565664,0.000050649054,0.000035752513,0.000053769247,0.000010294298,0.00015184685,0.0000018039328],"about_ca_topic_score_codex":0.15698259,"about_ca_topic_score_gemma":0.23171575,"teacher_disagreement_score":0.15698259,"about_ca_system_score_codex":0.0009967055,"about_ca_system_score_gemma":0.0005710487,"threshold_uncertainty_score":0.31213772},"labels":[],"label_agreement":null},{"id":"W4409086163","doi":"10.1080/19490976.2025.2481178","title":"Effects of bacteriophages on gut microbiome functionality","year":2025,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Israel Science Foundation; European Commission; Canadian Institute for Advanced Research","keywords":"Biology; Microbiome; Commensalism; Gut microbiome; Gut flora; Immunity; Genome; Disease; Gut bacteria; Human microbiome; Host (biology); Microbiology; Bacteria; Immunology; Immune system; Genetics; Gene","score_opus":0.009827630016377504,"score_gpt":0.2795854396233126,"score_spread":0.26975780960693513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409086163","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004107302,0.99793565,0.00012361581,0.00013252243,0.00014567588,0.0000034186346,0.000021571539,0.0000071830455,0.00121966],"genre_scores_gemma":[0.002358474,0.99650085,0.00018271974,0.00012578462,0.00008977992,0.000005996654,0.000034061668,0.0000019209515,0.00070046715],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99984455,0.00002851693,0.00001677188,0.00002814999,0.00006128513,0.000020716712],"domain_scores_gemma":[0.99980754,0.00009765453,0.000027233817,0.0000051072343,0.000044441556,0.000018115803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003527835,0.0005828808,0.0008024536,0.0012243149,0.000196458,0.0008544617,0.00035761527,0.000672217,0.003296097],"category_scores_gemma":[0.00062373036,0.00016242062,0.00048659593,0.00085302617,0.00027838055,0.0006850068,0.00052696007,0.0009371012,0.0010237639],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115300136,0.000058877587,0.0004607807,0.023650395,0.00013785611,0.00019144228,0.00008257263,0.0004062792,0.00918079,0.0038318827,0.013903582,0.9479802],"study_design_scores_gemma":[0.000018013941,0.00022303758,0.0026576798,0.004981832,0.00019358446,0.0015292522,0.00009232162,0.00013275485,0.003804006,0.0017996085,0.9845392,0.000028766492],"about_ca_topic_score_codex":0.0006514259,"about_ca_topic_score_gemma":0.0010493551,"teacher_disagreement_score":0.003296097,"about_ca_system_score_codex":0.00037005375,"about_ca_system_score_gemma":0.0007182351,"threshold_uncertainty_score":0.011026561},"labels":[],"label_agreement":null},{"id":"W4409119882","doi":"10.1080/19490976.2025.2486511","title":"Integrative metagenomics and metabolomics reveal age-associated gut microbiota and metabolite alterations in a hamster model of COVID-19","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Health Canada","funders":"National Institutes of Health; Institute Pasteur De Lille; Centre National de la Recherche Scientifique; National Institute of Diabetes and Digestive and Kidney Diseases; Fundação de Amparo à Pesquisa do Estado de São Paulo; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche; Université de Lille","keywords":"Biology; Gut flora; Metabolomics; Dysbiosis; Microbiome; Metagenomics; Disease; Metabolite; Physiology; Microbiology; Internal medicine; Immunology; Endocrinology; Bioinformatics; Medicine; Biochemistry","score_opus":0.015468678329410632,"score_gpt":0.2883055002027835,"score_spread":0.2728368218733729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409119882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929524,0.0014719496,0.0029576602,0.000047419984,0.000016535352,0.000031121595,0.0022413686,0.000049255115,0.00023224184],"genre_scores_gemma":[0.9860474,0.0011740227,0.0066222465,0.00017171304,0.000011485454,0.000090708025,0.004704891,0.0000475518,0.0011300037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99981433,0.000026537067,0.00001375671,0.0000745729,0.00003750984,0.000033345594],"domain_scores_gemma":[0.99986184,0.000011248196,0.00004974689,0.000021319975,0.000027830474,0.000028075943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036219708,0.00046820397,0.00068747764,0.0006238998,0.00024246807,0.00040468495,0.00019977769,0.00034811426,0.00036604758],"category_scores_gemma":[0.00016009822,0.00021218539,0.00062427425,0.00046693685,0.0002105124,0.00028163532,0.000407632,0.00048185798,0.00009533333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089461246,0.000068982175,0.02512246,0.00011436845,0.00023655017,0.00006647485,0.000063633415,0.00026970552,0.96919245,0.00006213428,0.000078629324,0.0038299558],"study_design_scores_gemma":[0.00005006609,0.002278425,0.7898859,0.000043138225,0.0009161808,0.00036681234,0.00034608698,0.0066461815,0.19529238,0.00042315575,0.0036958053,0.0000558682],"about_ca_topic_score_codex":0.0019836277,"about_ca_topic_score_gemma":0.0032088645,"teacher_disagreement_score":0.0019836277,"about_ca_system_score_codex":0.0003606007,"about_ca_system_score_gemma":0.00032247955,"threshold_uncertainty_score":0.003944218},"labels":[],"label_agreement":null},{"id":"W4409444764","doi":"10.1080/19490976.2025.2492376","title":"Urease in acetogenic Lachnospiraceae drives urea carbon salvage in SCFA pools","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Wastewater Treatment and Nitrogen Removal","field":"Environmental Science","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Emerald Foundation","keywords":"Lachnospiraceae; Urease; Biology; Urea; Carbon fibers; Biochemistry; Microbiology; Gene; Materials science","score_opus":0.004664765088288614,"score_gpt":0.21418553247201222,"score_spread":0.2095207673837236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409444764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924705,0.00079247495,0.005184075,0.0001199916,0.000015633199,0.0000106040325,0.00039503447,0.00013657339,0.00087514776],"genre_scores_gemma":[0.993731,0.00031455627,0.0035354423,0.000060783674,0.0000059231375,0.00001329871,0.00067069766,0.000022896671,0.0016453845],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999049,0.000013923397,0.0000051226098,0.000024464767,0.000026331181,0.00002530625],"domain_scores_gemma":[0.99990976,0.000009378033,0.000029920971,0.000010682405,0.000016978429,0.00002337383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001349342,0.0002606659,0.00018289285,0.00010971429,0.00013451849,0.00032010747,0.00016087054,0.00019383668,0.0006783162],"category_scores_gemma":[0.00016843692,0.00012051143,0.00026099017,0.00014572397,0.0001691791,0.00015280723,0.0002207665,0.00030838157,0.00025826186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077577075,0.000011030411,0.0011657232,0.000024086774,0.0000046248542,0.00002871595,0.000010679668,0.00012211932,0.9967738,0.00008537507,0.000049003596,0.0016472155],"study_design_scores_gemma":[0.000019400424,0.00030246476,0.044093132,0.000018332637,0.000022542628,0.0003357487,0.00012191881,0.008568601,0.9421625,0.0003251224,0.004016737,0.000013406205],"about_ca_topic_score_codex":0.0031302925,"about_ca_topic_score_gemma":0.0031306588,"teacher_disagreement_score":0.0031302925,"about_ca_system_score_codex":0.00031515647,"about_ca_system_score_gemma":0.00024311786,"threshold_uncertainty_score":0.0062241554},"labels":[],"label_agreement":null},{"id":"W4409600614","doi":"10.1080/19490976.2025.2491667","title":"Delivery mode, birth order, and sex impact neonatal microbial colonization","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canada Research Chairs; Deutsche Forschungsgemeinschaft","keywords":"Biology; Colonization; Birth order; Order (exchange); Microbiology; Environmental health; Medicine","score_opus":0.00397321849270791,"score_gpt":0.25775451783774994,"score_spread":0.253781299345042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409600614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758303,0.0012378145,0.00025972587,0.0000593691,0.0000144606865,0.0000057237567,0.00019515544,0.0000058855508,0.00063872826],"genre_scores_gemma":[0.9980768,0.00092340674,0.00033695882,0.000032427903,0.000009018723,0.000007675626,0.00012358426,0.0000075037647,0.00048264174],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996118,0.00012518524,0.00003579086,0.00006499549,0.0000977914,0.00006444875],"domain_scores_gemma":[0.9985884,0.00063859654,0.0004170969,0.00009533067,0.00009149092,0.00016897627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004873103,0.00024824595,0.00029684982,0.00032362773,0.00014531284,0.00047352267,0.00018417665,0.0001741482,0.0021477747],"category_scores_gemma":[0.0033066692,0.000101159254,0.00025178023,0.00028642203,0.00021833219,0.00024461708,0.00042416184,0.00026214332,0.0002738663],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076868705,0.000057521043,0.946571,0.000089798756,0.0000989827,0.0007234205,0.00032873484,0.0001247635,0.02394448,0.0001419698,0.00018081692,0.02696986],"study_design_scores_gemma":[0.0000027778656,0.0002943972,0.99613875,0.00002685518,0.000034366287,0.00059887563,0.00026244356,0.00017054043,0.0018987358,0.00011034769,0.00045473585,0.0000073005135],"about_ca_topic_score_codex":0.0012677757,"about_ca_topic_score_gemma":0.0019194402,"teacher_disagreement_score":0.0021477747,"about_ca_system_score_codex":0.0001731265,"about_ca_system_score_gemma":0.0003823854,"threshold_uncertainty_score":0.0071849823},"labels":[],"label_agreement":null},{"id":"W4410092547","doi":"10.1080/19490976.2025.2494717","title":"Defining enteric bacterial pathogenesis using organoids: Citrobacter rodentium uses EspC, an atypical mucinolytic protease, to penetrate mouse colonic mucus","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; University of British Columbia","funders":"Canadian Institutes of Health Research; Life Sciences Institute; Crohn's and Colitis Canada; Canada Foundation for Innovation","keywords":"Citrobacter rodentium; Biology; Mucus; Microbiology; Pathogenesis; Immunology; Ecology; Pathogen","score_opus":0.011612334317154895,"score_gpt":0.28537709942401673,"score_spread":0.2737647651068618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410092547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895648,0.0011202798,0.006326208,0.00012984528,0.000045515084,0.00011486224,0.0007461171,0.00012426157,0.0018281273],"genre_scores_gemma":[0.9839023,0.0010270198,0.012079073,0.000101585894,0.000008677843,0.00011519294,0.0009840735,0.00003907464,0.0017430554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99972564,0.00004258662,0.000026870934,0.00008441461,0.000054160813,0.000066461944],"domain_scores_gemma":[0.99976164,0.000042579304,0.000069727,0.000032067368,0.000024144347,0.00006976837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028204187,0.00081585173,0.00022113662,0.0003756833,0.00020272119,0.00038837234,0.00029341003,0.00066816114,0.00070711283],"category_scores_gemma":[0.00012946148,0.00020862294,0.00042403588,0.00018464823,0.00039091974,0.00039008382,0.00046156097,0.00096763344,0.00031332058],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054052805,0.000019977846,0.00024301402,0.000024926932,0.000002538358,0.00004378879,0.000024105515,0.00010048123,0.99912316,0.000050216877,0.00001938934,0.00029433006],"study_design_scores_gemma":[0.000010686509,0.0005527074,0.0034686509,0.000011730814,0.000014445118,0.00020924337,0.000104031045,0.0015811436,0.99262404,0.000036621284,0.0013763664,0.0000104317805],"about_ca_topic_score_codex":0.0013531832,"about_ca_topic_score_gemma":0.002452188,"teacher_disagreement_score":0.0013531832,"about_ca_system_score_codex":0.00039360783,"about_ca_system_score_gemma":0.0001953587,"threshold_uncertainty_score":0.002855897},"labels":[],"label_agreement":null},{"id":"W4410280320","doi":"10.1080/19490976.2025.2501492","title":"Bacteriophage-driven DNA inversions shape bacterial functionality and long-term co-existence in Bacteroides fragilis","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Technion-Israel Institute of Technology; European Research Council; Human Frontier Science Program; European Commission; Canadian Institute for Advanced Research; Israel Institute; University of Michigan; Seerave Foundation; Israel Cancer Research Fund","keywords":"Bacteroides fragilis; Biology; Bacteriophage; DNA; Term (time); Microbiology; Bacteriophage Mu; Genetics; Computational biology; Bacteria; Gene; Escherichia coli","score_opus":0.010204167506399318,"score_gpt":0.2505172057294079,"score_spread":0.24031303822300856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410280320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992874,0.00012425933,0.00029674498,0.00001522815,0.000002902878,0.0000028908137,0.00006355637,0.000014321987,0.00019273159],"genre_scores_gemma":[0.9992698,0.000046382906,0.00023668178,0.000012449359,0.0000019235558,0.000005542063,0.00010351355,0.0000052171313,0.00031858677],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998989,0.000015097653,0.0000043892865,0.000020569358,0.000021665404,0.000039280465],"domain_scores_gemma":[0.99989283,0.000014703869,0.00004620316,0.0000080228665,0.000009477701,0.000028665549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008109212,0.00020787754,0.00010256338,0.00014003195,0.00008734619,0.00019374467,0.00010765167,0.00018652041,0.0005887179],"category_scores_gemma":[0.00012619678,0.000079409656,0.00010764612,0.00008208566,0.00015004199,0.000114930415,0.00021265344,0.00026682465,0.00014950188],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004213898,0.000004774346,0.0003249317,0.000004128843,8.128747e-7,0.000010616672,0.000007870748,0.000011058254,0.9992937,0.0000095385585,0.000005721713,0.0002846505],"study_design_scores_gemma":[0.000010405563,0.00065666455,0.09674339,0.000008081804,0.000011892959,0.00029821458,0.00015259354,0.0011332951,0.8998472,0.00007356114,0.00105087,0.0000137463],"about_ca_topic_score_codex":0.00048534985,"about_ca_topic_score_gemma":0.00063435186,"teacher_disagreement_score":0.0005887179,"about_ca_system_score_codex":0.00019751639,"about_ca_system_score_gemma":0.00008361548,"threshold_uncertainty_score":0.0019694567},"labels":[],"label_agreement":null},{"id":"W4410565100","doi":"10.1080/19490976.2025.2501194","title":"The influence of early life exposures on the infant gut virome","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Det Sundhedsvidenskabelige Fakultet, Københavns Universitet; Canadian Institutes of Health Research; Institut National de la Recherche Agronomique; Novo Nordisk Fonden; Danish Agency for Science and Higher Education; Faculty of Health and Medical Sciences, University of Western Australia; Copenhagen Graduate School for Nanoscience and Nanotechnology; Novo Nordisk","keywords":"Human virome; Biology; Microbiome; Metagenomics; Bioinformatics; Genetics","score_opus":0.014680148847935982,"score_gpt":0.2998731413380848,"score_spread":0.2851929924901488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410565100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715805,0.00070412323,0.00047883778,0.0000305377,0.0000070027627,0.000005880099,0.0009835716,0.000008281575,0.00062370586],"genre_scores_gemma":[0.9971077,0.00039170482,0.00059418904,0.000024770428,0.000006398505,0.000013900875,0.0011977745,0.000017423501,0.0006461494],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996152,0.00008786894,0.000018544455,0.00011100326,0.00006660662,0.00010066387],"domain_scores_gemma":[0.9994019,0.00012951055,0.000196257,0.00006718066,0.00006169632,0.00014344412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046825304,0.00034179146,0.00033824617,0.00056679384,0.00029938619,0.00079782505,0.00022411252,0.00029914195,0.0021876935],"category_scores_gemma":[0.0014556686,0.00018926625,0.00034273803,0.000515731,0.00019789567,0.0003003339,0.00069572456,0.00049006444,0.00038098104],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053710025,0.00004356684,0.9645801,0.000052267897,0.0001024423,0.0003152377,0.0003940554,0.00014584459,0.023252714,0.00018878696,0.00022207534,0.010165886],"study_design_scores_gemma":[0.0000011963663,0.000106317355,0.9978064,0.00001242699,0.000017076312,0.00029990578,0.00017890062,0.0001442309,0.0008064679,0.00006930776,0.00055237097,0.000005324483],"about_ca_topic_score_codex":0.0025390573,"about_ca_topic_score_gemma":0.0034185247,"teacher_disagreement_score":0.0025390573,"about_ca_system_score_codex":0.00023334958,"about_ca_system_score_gemma":0.00021948286,"threshold_uncertainty_score":0.0073185563},"labels":[],"label_agreement":null},{"id":"W4410694533","doi":"10.1080/19490976.2025.2505117","title":"Metaproteomics reveals age-specific alterations of gut microbiome in hamsters with SARS-CoV-2 infection","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Health Canada","funders":"Health Canada; Agence Nationale de la Recherche; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Metaproteomics; Microbiome; Gut microbiome; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Virology; Metagenomics; Immunology; Disease; Microbiology; Bioinformatics; Genetics; Infectious disease (medical specialty); Internal medicine; Gene; Medicine","score_opus":0.015640989041464683,"score_gpt":0.2802672937216364,"score_spread":0.26462630468017173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410694533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914892,0.0011946468,0.003506728,0.000052894844,0.000025098621,0.000025250138,0.003287103,0.000098367746,0.00032078382],"genre_scores_gemma":[0.9862434,0.00076519576,0.007174248,0.00015712489,0.000011805266,0.000061113555,0.0047482373,0.00006605052,0.00077277684],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997569,0.000029958537,0.00002060914,0.000106318344,0.000048351438,0.000037803304],"domain_scores_gemma":[0.9998424,0.000016546406,0.00005117625,0.000027941416,0.000031811473,0.00003012849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046684005,0.00036005778,0.00061285944,0.0006344328,0.00027392714,0.00047492422,0.00015933355,0.0003135776,0.0006265873],"category_scores_gemma":[0.00031041927,0.00021463732,0.0007128559,0.00049343536,0.00019311279,0.00036482126,0.0005501733,0.0003969264,0.00018751954],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007197204,0.000045849385,0.0582152,0.0001459669,0.00022829593,0.00008414781,0.00013707,0.00030900224,0.93423915,0.00007031241,0.00016016827,0.005645173],"study_design_scores_gemma":[0.00001938114,0.0005802969,0.8104578,0.00003159863,0.00045982204,0.00039179812,0.00034770046,0.0055369153,0.17861919,0.00034168237,0.003162326,0.00005144542],"about_ca_topic_score_codex":0.0010948047,"about_ca_topic_score_gemma":0.0013987442,"teacher_disagreement_score":0.0010948047,"about_ca_system_score_codex":0.00022717891,"about_ca_system_score_gemma":0.00022330967,"threshold_uncertainty_score":0.002468884},"labels":[],"label_agreement":null},{"id":"W4411129620","doi":"10.1080/19490976.2025.2514136","title":"Interaction between the breast tumor microenvironment and gut microbiome","year":2025,"lang":"en","type":"review","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Akkermansia muciniphila; Biology; Breast cancer; Dysbiosis; Microbiome; Tumor microenvironment; Gut flora; Cancer; Immune system; Metabolome; Disease; Immunology; Bioinformatics; Medicine; Internal medicine; Metabolomics; Genetics","score_opus":0.013591033739171384,"score_gpt":0.29585194766974765,"score_spread":0.2822609139305763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411129620","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014800791,0.9983431,0.00012652026,0.00030857295,0.00017921002,0.0000025011364,0.00002156043,0.000007670296,0.00086291216],"genre_scores_gemma":[0.0008563138,0.9981171,0.00014820276,0.00014636053,0.00015126207,0.00000386298,0.00003382308,0.0000013069745,0.00054191373],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998865,0.000025384848,0.0000143369425,0.000021091331,0.000038762795,0.000013936492],"domain_scores_gemma":[0.9998074,0.00009272853,0.000025385456,0.0000060992006,0.000045637993,0.000022752272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029444435,0.0005921145,0.0009566201,0.0014183566,0.0001891167,0.0008809411,0.00040928138,0.0007355963,0.0033331744],"category_scores_gemma":[0.0005536199,0.0001583592,0.0003401353,0.0011386723,0.00026231734,0.00079175556,0.00059695804,0.0010366292,0.0015593242],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006421187,0.00003630823,0.0002587329,0.012472822,0.000078068115,0.00018469674,0.000039925228,0.00021990565,0.0019213841,0.0023894312,0.021689907,0.9606446],"study_design_scores_gemma":[0.000010341112,0.00008445206,0.0018324668,0.004046818,0.00010675974,0.0016478233,0.00006445578,0.000089941976,0.00054399535,0.0016956471,0.9898583,0.000019119512],"about_ca_topic_score_codex":0.00087492855,"about_ca_topic_score_gemma":0.0014492163,"teacher_disagreement_score":0.0033331744,"about_ca_system_score_codex":0.00044488243,"about_ca_system_score_gemma":0.0008349324,"threshold_uncertainty_score":0.0111505985},"labels":[],"label_agreement":null},{"id":"W4411772078","doi":"10.1080/19490976.2025.2519699","title":"Intestinal host–microbe interactions fuel pulmonary inflammation in cigarette smoke exposed mice","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"LEO Fondet; Novozymes; Novo Nordisk Fonden; Faculty of Health and Medical Sciences, University of Western Australia; Novo Nordisk","keywords":"Biology; Lung; Mucus; COPD; Immunology; Gut flora; Immune system; Pathogenesis; Inflammation; Pulmonary disease; Cigarette smoke; Antibiotics; Host (biology); Microbiology; Medicine; Ecology","score_opus":0.011727634856770407,"score_gpt":0.2696816817788572,"score_spread":0.2579540469220868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411772078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918996,0.001609948,0.0033608,0.00048508376,0.00007369258,0.00006535043,0.00083283306,0.00016614184,0.001506596],"genre_scores_gemma":[0.98838705,0.0016788408,0.0039094184,0.00037771632,0.000026036738,0.00015257292,0.0006228775,0.000059896345,0.004785577],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99965835,0.00006240411,0.000033056458,0.00007906657,0.00007896898,0.00008822305],"domain_scores_gemma":[0.99971527,0.000026829224,0.000087426684,0.000029050168,0.000015806569,0.0001254707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031919812,0.00061635737,0.00046433762,0.00070772495,0.0003093421,0.00052791677,0.0003312641,0.00083924195,0.0016356863],"category_scores_gemma":[0.00013835286,0.0004140504,0.00048764766,0.00027271773,0.00062649685,0.00043277338,0.00039042125,0.0021973492,0.00038848564],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000758939,0.00025288283,0.00089288567,0.000042825515,0.000012463768,0.000090541,0.00004500737,0.00009926701,0.99597025,0.00020746478,0.000061033577,0.0015664476],"study_design_scores_gemma":[0.00012183127,0.0025265499,0.023077538,0.00004356445,0.00008326764,0.0003597565,0.00020852666,0.0030295446,0.9668655,0.0004064433,0.0032549482,0.00002257442],"about_ca_topic_score_codex":0.0008530656,"about_ca_topic_score_gemma":0.0019162484,"teacher_disagreement_score":0.0016356863,"about_ca_system_score_codex":0.00039052457,"about_ca_system_score_gemma":0.00038583312,"threshold_uncertainty_score":0.005471945},"labels":[],"label_agreement":null},{"id":"W4412756731","doi":"10.1080/19490976.2025.2538696","title":"Cathelicidin regulates goblet cell mucus secretion and mucus-associated proteins in Citrobacter rodentium -induced colitis","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; University of Calgary; Cumming School of Medicine, University of Calgary; Agriculture Funding Consortium; International Microbiome Centre, University of Calgary; Natural Sciences and Engineering Research Council of Canada; Government of Alberta","keywords":"Citrobacter rodentium; Mucus; Biology; Goblet cell; Microbiology; Secretion; Colitis; Citrobacter; Immunology; Escherichia coli; Enterobacteriaceae; Ecology; Biochemistry; Epithelium; Genetics","score_opus":0.0065938421011193325,"score_gpt":0.18973941640230133,"score_spread":0.183145574301182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412756731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779236,0.0010485762,0.00046843762,0.00009480462,0.000013506443,0.000017201011,0.0001496547,0.000049966722,0.00036547563],"genre_scores_gemma":[0.99782026,0.00048006026,0.00069316063,0.00007462672,0.0000068522845,0.00003257832,0.00018759724,0.000013963417,0.000691034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997663,0.000049616487,0.000029142559,0.00004844753,0.00003649785,0.00006997073],"domain_scores_gemma":[0.9997118,0.000018836929,0.00012466339,0.000025117757,0.000020518139,0.00009908492],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016970339,0.00038035453,0.00033882144,0.0003153392,0.00015355903,0.00028839108,0.0002110808,0.000566866,0.000737457],"category_scores_gemma":[0.00019183842,0.0002328857,0.0003374358,0.00013033148,0.00044347814,0.00026810606,0.0002477454,0.00083893415,0.0002200117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043126135,0.0000468565,0.0006327311,0.00003364198,0.0000034254526,0.00013467114,0.000019428473,0.000022139186,0.9981433,0.000020707,0.000025132938,0.00048673872],"study_design_scores_gemma":[0.00008492764,0.0014773237,0.06980884,0.00002777195,0.00005310983,0.0017688881,0.00019568719,0.0009015339,0.9239432,0.00008251141,0.0016376041,0.00001854577],"about_ca_topic_score_codex":0.0006402209,"about_ca_topic_score_gemma":0.0006148911,"teacher_disagreement_score":0.000737457,"about_ca_system_score_codex":0.00032705194,"about_ca_system_score_gemma":0.00017142977,"threshold_uncertainty_score":0.0024670362},"labels":[],"label_agreement":null},{"id":"W4412883429","doi":"10.1080/19490976.2025.2539450","title":"The colonic mucosal virome in inflammatory bowel disease reveals Crassvirales depletion and disease-specific virome features","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Ministero dello Sviluppo Economico; Ontario Ministry of Economic Development and Innovation; Government of Canada; Canadian Institutes of Health Research; Alliance de recherche numérique du Canada; Ontario Genomics; Genome Canada; Faculty of Medicine, University of Ottawa; Ontario Genomics Institute; Western Canada Research Grid; University of Ottawa","keywords":"Human virome; Biology; Disease; Inflammatory bowel disease; Immunology; Metagenomics; Pathology; Genetics; Gene; Medicine","score_opus":0.004820568702956833,"score_gpt":0.21752710956186894,"score_spread":0.2127065408589121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412883429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984749,0.00044748702,0.00033976446,0.000022273627,0.0000034729915,0.0000056150734,0.00038172447,0.000010245414,0.00031441255],"genre_scores_gemma":[0.9983882,0.00015657359,0.0005748828,0.000034990375,0.0000038653156,0.000008092438,0.0005528441,0.000006785568,0.00027391373],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998266,0.000024878962,0.000012517397,0.000063222586,0.000029880275,0.000042851425],"domain_scores_gemma":[0.9997458,0.000047102832,0.00007401635,0.000038364917,0.000030349003,0.00006439889],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021178983,0.00020872083,0.00027400628,0.00074538373,0.000332154,0.0005705144,0.00010282926,0.00033430156,0.0013906526],"category_scores_gemma":[0.0005506179,0.0001558276,0.00025899202,0.00047032692,0.00028712468,0.00028389745,0.00042985642,0.00039354555,0.00019996484],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018861187,0.000061041945,0.42000037,0.00017479797,0.0001740315,0.00034026973,0.0006814912,0.0003275108,0.5607805,0.0001491516,0.00022043138,0.015204276],"study_design_scores_gemma":[0.000006482866,0.00023476631,0.98730147,0.000019676641,0.0000379748,0.00057878625,0.00038887627,0.0006183346,0.009816021,0.00011180134,0.0008770849,0.000008714893],"about_ca_topic_score_codex":0.0013704096,"about_ca_topic_score_gemma":0.0023661093,"teacher_disagreement_score":0.0013906526,"about_ca_system_score_codex":0.00018093041,"about_ca_system_score_gemma":0.00013461844,"threshold_uncertainty_score":0.0046522617},"labels":[],"label_agreement":null},{"id":"W4413054910","doi":"10.1080/19490976.2025.2542385","title":"Using MUC2 mucin producing tumorigenic human goblet-like cells to uncover functional properties of the mucus barrier","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; Alberta Bone and Joint Health Institute; University of Calgary","funders":"Canadian Glycomics Network; Canadian Institutes of Health Research","keywords":"Mucin; Biology; Mucus; Mucin 2; Goblet cell; Cell biology; Downregulation and upregulation; Gene expression; Biochemistry; Gene; Epithelium; Genetics","score_opus":0.026977930564507164,"score_gpt":0.27299826398037186,"score_spread":0.24602033341586468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413054910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99464864,0.00045878658,0.003180883,0.000085227344,0.0000148509125,0.000086903914,0.00072646054,0.00004589413,0.00075237517],"genre_scores_gemma":[0.98794717,0.00057068514,0.0064646816,0.00007129745,0.0000070788533,0.00007157555,0.0021340274,0.000023053575,0.0027104374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989295,0.000017386968,0.000010858273,0.000023346262,0.000033795153,0.000021583239],"domain_scores_gemma":[0.9999114,0.000018429431,0.000016934453,0.000020061298,0.000015719226,0.000017371527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001857767,0.00027184238,0.0001632443,0.00024820855,0.00016073867,0.00021918547,0.00010663794,0.00025799905,0.0010327474],"category_scores_gemma":[0.00013909323,0.00011019807,0.00024040324,0.00025171446,0.000144861,0.00011566946,0.00021630448,0.00036725594,0.000395457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003453794,0.000017037426,0.0003162639,0.000008686643,0.000002471501,0.000052462558,0.000011733182,0.000036094658,0.99913424,0.000034938632,0.000013302629,0.0003381487],"study_design_scores_gemma":[0.000022715925,0.000926515,0.013784458,0.0000050553035,0.00002152652,0.0008935826,0.0000853741,0.0017024091,0.9798782,0.000074174226,0.0025978326,0.000008213045],"about_ca_topic_score_codex":0.0012685601,"about_ca_topic_score_gemma":0.0015433215,"teacher_disagreement_score":0.0012685601,"about_ca_system_score_codex":0.00016809469,"about_ca_system_score_gemma":0.00014037795,"threshold_uncertainty_score":0.003454864},"labels":[],"label_agreement":null},{"id":"W4413307290","doi":"10.1080/19490976.2025.2543123","title":"HIF-1 attenuates high-fiber diet-mediated proliferation and stemness of colonic epithelium","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Diet and metabolism studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"Fundação de Desenvolvimento da Unicamp; National Institute of Allergy and Infectious Diseases; National Cancer Institute; Pew Charitable Trusts; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; Fundação de Amparo à Pesquisa do Estado de São Paulo; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Essex","keywords":"Biology; Epithelium; Dietary fiber; Intestinal epithelium; Cancer research; Cell biology; Food science; Genetics","score_opus":0.007448433189931758,"score_gpt":0.24898167260522755,"score_spread":0.24153323941529578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413307290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99590296,0.0014280621,0.0013050328,0.00020334791,0.000064943095,0.000023182047,0.00021348188,0.000044886376,0.0008140264],"genre_scores_gemma":[0.9956601,0.00075865927,0.0009849977,0.0001216671,0.000022461938,0.0000326972,0.00023182441,0.000017069444,0.0021705606],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99987876,0.000031740197,0.000009114661,0.000020873957,0.000017125132,0.000042344993],"domain_scores_gemma":[0.99987566,0.000015953381,0.000031344633,0.000013002727,0.000015172429,0.000048826143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020859212,0.0002460559,0.00028548963,0.0002648192,0.0001528307,0.00025436995,0.0001359763,0.0002950727,0.0019811022],"category_scores_gemma":[0.00013203078,0.00013467493,0.00021481092,0.00013700617,0.0002794943,0.00023356415,0.00022996428,0.0006733246,0.00014823384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015524478,0.00018645734,0.0002515733,0.000080831065,0.0000134220345,0.000018836265,0.000031957552,0.00010410944,0.9946622,0.00006768014,0.00007695364,0.0029535536],"study_design_scores_gemma":[0.00007075052,0.0023564866,0.0074662254,0.000014316804,0.000034512464,0.000045204906,0.00010323436,0.0009550445,0.9862227,0.00006965024,0.0026562063,0.000005707406],"about_ca_topic_score_codex":0.0007750301,"about_ca_topic_score_gemma":0.0014771093,"teacher_disagreement_score":0.0019811022,"about_ca_system_score_codex":0.00027513556,"about_ca_system_score_gemma":0.00029156986,"threshold_uncertainty_score":0.0066275},"labels":[],"label_agreement":null},{"id":"W4414019364","doi":"10.1080/19490976.2025.2546998","title":"Metabolomics reveal distinct molecular pathways associated with future risk of Crohn’s Disease","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; St. Paul's Hospital; University of Manitoba; Queen's University; BC Children's Hospital; Children's Hospital of Eastern Ontario; University of Ottawa; McGill University Health Centre; Centre Hospitalier Universitaire Sainte-Justine; University of British Columbia; University Health Network; Health Sciences Centre; Ontario College of Art and Design; Hospital for Sick Children; Université de Montréal; University of Alberta; University of Toronto; Princess Margaret Cancer Centre; University of Calgary; Mount Sinai Hospital","funders":"Temerty Faculty of Medicine, University of Toronto; Canadian Institutes of Health Research; Leonard M. Miller School of Medicine; Crohn's and Colitis Canada; Hospital for Sick Children; University of Toronto; University of Alberta; Leona M. and Harry B. Helmsley Charitable Trust; Dalhousie University; Max Rady College of Medicine, University of Manitoba; BC Children's Hospital; Queen's University; Hebrew University of Jerusalem; McMaster University; McGill University Health Centre; McGill University; Cincinnati Children's Hospital Medical Center; Government of Ontario; Faculty of Medicine and Dentistry, University of Alberta; University of Miami","keywords":"Biology; Metabolomics; Crohn's disease; Disease; Computational biology; Bioinformatics; Genetics; Internal medicine; Medicine","score_opus":0.0031547806225198584,"score_gpt":0.19737272747011067,"score_spread":0.1942179468475908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414019364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979334,0.0010327642,0.0003431791,0.000057852634,0.0000032823762,0.000005445821,0.00039591733,0.000008537952,0.00021963294],"genre_scores_gemma":[0.9987476,0.00027378037,0.00038253507,0.00002753852,0.000005344969,0.000004248404,0.00036105065,0.0000029980242,0.00019487579],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997781,0.000048443297,0.00001611513,0.000068820365,0.00003928816,0.000049262417],"domain_scores_gemma":[0.9997259,0.000048883867,0.00012671133,0.000027103653,0.000023853148,0.000047610967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037090335,0.00044131812,0.00041358473,0.00086539943,0.00026994405,0.0007586545,0.00014003101,0.0003880328,0.0009650357],"category_scores_gemma":[0.0005498758,0.00020901837,0.0003365106,0.0008674672,0.00021702277,0.00024683742,0.00046209057,0.00035501615,0.00011055646],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002381386,0.000104065606,0.9356439,0.00006491512,0.000433586,0.00032295517,0.0001904818,0.0003175437,0.048945922,0.00012493579,0.00016064914,0.011309668],"study_design_scores_gemma":[0.000011039398,0.00009840247,0.99707425,0.000006722331,0.00008459968,0.00026795364,0.00007412197,0.00047880167,0.0015576186,0.00012489579,0.00021674293,0.0000047471526],"about_ca_topic_score_codex":0.0021810285,"about_ca_topic_score_gemma":0.0035690828,"teacher_disagreement_score":0.0021810285,"about_ca_system_score_codex":0.00027324972,"about_ca_system_score_gemma":0.0001771972,"threshold_uncertainty_score":0.0043367147},"labels":[],"label_agreement":null},{"id":"W4416096008","doi":"10.1080/19490976.2025.2573045","title":"Microbiota shape the colon epithelium controlling inter-crypt absorptive goblet cells via butyrate–GP R109A signalling","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"National Institute of Environmental Health Sciences; Universidade Estadual de Campinas; National Institute of Allergy and Infectious Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; Biotechnology and Biological Sciences Research Council; National Institutes of Health; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Centre National de la Recherche Scientifique; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Quadram Institute Bioscience; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Butyrate; Microbiome; Epithelium; Population; Intestinal epithelium; Short-chain fatty acid; Gut flora; Receptor; Function (biology)","score_opus":0.00543211662118034,"score_gpt":0.23566797970046874,"score_spread":0.2302358630792884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416096008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878065,0.002296726,0.007246442,0.00024659774,0.00004054335,0.000026450336,0.0006834042,0.00015324734,0.0015001022],"genre_scores_gemma":[0.99310994,0.0012484294,0.0028656684,0.00011546914,0.000010764256,0.000023884966,0.00034533362,0.0000445961,0.0022359071],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998012,0.00003581803,0.0000118287235,0.00005137364,0.000049165796,0.00005062205],"domain_scores_gemma":[0.9998965,0.000013182121,0.00003563931,0.00001190038,0.0000123755,0.00003033179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014932449,0.00029301865,0.00030209022,0.00023667383,0.0001515223,0.00061731687,0.00014971316,0.00033149504,0.001082674],"category_scores_gemma":[0.00013712628,0.00018799808,0.0002822428,0.00015352711,0.00031687436,0.00037351815,0.00041551836,0.00061598595,0.00045092189],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005147851,0.0000019236618,0.00027948973,0.00001414616,0.0000017937547,0.000023937768,0.000007633944,0.000017702254,0.99911326,0.000043094107,0.0000087415165,0.0004368585],"study_design_scores_gemma":[0.000024436817,0.00019361159,0.050349962,0.000026519743,0.000040208164,0.00031743458,0.00026973445,0.0018511763,0.9431766,0.00028165462,0.0034553483,0.000013376244],"about_ca_topic_score_codex":0.0004896309,"about_ca_topic_score_gemma":0.00081990275,"teacher_disagreement_score":0.001082674,"about_ca_system_score_codex":0.00021278548,"about_ca_system_score_gemma":0.00018205562,"threshold_uncertainty_score":0.0036219358},"labels":[],"label_agreement":null},{"id":"W4416981964","doi":"10.1080/19490976.2025.2587400","title":"The microbial metabolite desaminotyrosine is a potent antiobesity agent with potential effects on white adipose tissue remodeling in mice","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Adipose Tissue and Metabolism","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"White adipose tissue; Adipose tissue; Adipocyte; Metabolite; White (mutation); Brown adipose tissue","score_opus":0.0068658119255969935,"score_gpt":0.24996010631283772,"score_spread":0.24309429438724073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416981964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97955316,0.0073156226,0.0072378963,0.0005588816,0.00018576173,0.00010996009,0.0010965333,0.00027250967,0.0036696754],"genre_scores_gemma":[0.97940123,0.0065511833,0.006633757,0.00028267404,0.00007315827,0.00017956037,0.0009815015,0.000044657932,0.0058521847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99983954,0.000024830855,0.000015264519,0.000039423747,0.00004573252,0.000035098332],"domain_scores_gemma":[0.99989605,0.000008163018,0.000038756472,0.000009931232,0.0000114715995,0.00003560828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018486986,0.0006084,0.0003087296,0.00044253477,0.00019724481,0.0002043759,0.00029268084,0.00038730603,0.0016543431],"category_scores_gemma":[0.00007971139,0.00017767838,0.000341832,0.00020520423,0.00028093322,0.00032007942,0.00019614915,0.0009413546,0.00023649294],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093719,0.00023871899,0.0002400868,0.000111000554,0.000017582344,0.000066463756,0.000015184735,0.00006249768,0.9937377,0.00017500983,0.00009043252,0.004308199],"study_design_scores_gemma":[0.00018424078,0.0044598137,0.004061297,0.00002672388,0.00008412479,0.00027020756,0.000040948424,0.000653042,0.98388636,0.0001069717,0.0062158173,0.000010465141],"about_ca_topic_score_codex":0.0004236723,"about_ca_topic_score_gemma":0.0009377282,"teacher_disagreement_score":0.0016543431,"about_ca_system_score_codex":0.00017426547,"about_ca_system_score_gemma":0.00025955142,"threshold_uncertainty_score":0.005534351},"labels":[],"label_agreement":null},{"id":"W4417150908","doi":"10.1080/19490976.2025.2596806","title":"Antagonistic drug interactions protect commensal Bacteroidaceae from macrolides via an RND-type efflux pump","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"European Research Council; Deutsche Forschungsgemeinschaft; Kempestiftelserna; Deutsches Zentrum für Infektionsforschung","keywords":"Efflux; Antibiotics; Drug; Drug resistance; Antibiotic resistance; Antimicrobial; Microbiome; Transcriptome","score_opus":0.0074399930589322824,"score_gpt":0.28150519068847396,"score_spread":0.2740651976295417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417150908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98382723,0.0034599202,0.008150603,0.0005511275,0.000058535374,0.000036611436,0.0004989039,0.00019610533,0.0032209891],"genre_scores_gemma":[0.9923131,0.0009196112,0.004821767,0.00024917806,0.000010929666,0.000024118839,0.00030838506,0.000028927869,0.0013240684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997241,0.000060717444,0.00002087863,0.000054169926,0.00008453194,0.000055621684],"domain_scores_gemma":[0.9998211,0.000022655368,0.000077752666,0.000022556756,0.000021937005,0.000034018656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022182126,0.00043075273,0.0004041895,0.00018753743,0.00019124303,0.0005294295,0.00014157136,0.0003965888,0.0010149629],"category_scores_gemma":[0.00024423862,0.00012153226,0.00028100636,0.00013560118,0.00026099067,0.00032851097,0.0004195353,0.00038121358,0.0004477905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028739727,0.000008114132,0.0002995297,0.000022419887,0.000003231524,0.000016068556,0.000006007175,0.0000128036645,0.9984586,0.000051785853,0.000027540715,0.0010653092],"study_design_scores_gemma":[0.0000089816795,0.00032573295,0.017833669,0.0000166358,0.000019423032,0.00038395694,0.000101296886,0.00059298234,0.9757844,0.000182389,0.0047397935,0.000010783753],"about_ca_topic_score_codex":0.00027154604,"about_ca_topic_score_gemma":0.00044446383,"teacher_disagreement_score":0.0010149629,"about_ca_system_score_codex":0.00026600243,"about_ca_system_score_gemma":0.0002741189,"threshold_uncertainty_score":0.0033954382},"labels":[],"label_agreement":null},{"id":"W4417152902","doi":"10.1080/19490976.2025.2587966","title":"Infection with gut parasites correlates with gut microbiome diversity across human populations in Africa","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"Max-Planck-Gesellschaft","keywords":"Metagenomics; Microbiome; Context (archaeology); Human microbiome; Host (biology); Shotgun sequencing; Gut microbiome; Parasite hosting","score_opus":0.029634199513135243,"score_gpt":0.31794279879545706,"score_spread":0.28830859928232183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417152902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998312,0.0008794872,0.00024243562,0.000057238194,0.0000028807517,0.000008596449,0.00019676767,0.0000044250733,0.00029613829],"genre_scores_gemma":[0.9989459,0.0004895441,0.0003647114,0.000024618628,0.0000036274682,0.00000831591,0.000084229476,0.0000023891191,0.00007670425],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99967504,0.00012612536,0.000014968554,0.000080924496,0.000049001424,0.00005390219],"domain_scores_gemma":[0.99957174,0.00008820321,0.00020850827,0.000033507196,0.00005368363,0.000044282893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004456428,0.00026477224,0.00021373629,0.0005734256,0.00036339965,0.00047214256,0.00014047355,0.00019998239,0.00093444914],"category_scores_gemma":[0.0021129288,0.0002070345,0.000119299824,0.0007969331,0.00041227567,0.00025347952,0.0005824657,0.0002886989,0.00009132289],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019129926,0.000026874099,0.9766839,0.00009001778,0.00011808433,0.00016938982,0.0010610485,0.0001306678,0.009671793,0.00009983987,0.00017754117,0.0115795955],"study_design_scores_gemma":[0.0000034645823,0.00007312008,0.9977457,0.00003453276,0.000036629575,0.0003128348,0.00058818277,0.0001364844,0.00050528697,0.00007016883,0.00048941735,0.0000042157026],"about_ca_topic_score_codex":0.007397035,"about_ca_topic_score_gemma":0.008821468,"teacher_disagreement_score":0.007397035,"about_ca_system_score_codex":0.0002654304,"about_ca_system_score_gemma":0.00024317324,"threshold_uncertainty_score":0.014707923},"labels":[],"label_agreement":null},{"id":"W4417498479","doi":"10.1080/19490976.2025.2599565","title":"Prominent mediatory role of gut microbiome in the effect of lifestyle on host metabolic phenotypes","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre","funders":"NUTRIM School of Nutrition and Translational Research in Metabolism; NIHR Imperial Biomedical Research Centre; Medical Research Council; Medical Research Council Centre for Neurodevelopmental Disorders; Conseil Régional Hauts-de-France; Fondation pour la Recherche Médicale; CHIST-ERA; HORIZON EUROPE Framework Programme; Wellcome Trust; Agence Nationale de la Recherche; Centre National de la Recherche Scientifique; European Central Bank; Fondation Leducq; Deutsches Zentrum für Herz-Kreislaufforschung; Université de Lille; European Commission; National Institute for Health and Care Research; Guts UK; Deutsche Forschungsgemeinschaft; Diabetes UK; UK Research and Innovation","keywords":"Microbiome; Mediation; Mediator; Phenotype; Insulin resistance; Host (biology); Gut microbiome; Transcriptome","score_opus":0.0021810477704619466,"score_gpt":0.237073544103061,"score_spread":0.23489249633259907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417498479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9819417,0.0056809504,0.007498189,0.00089013693,0.0000790379,0.00006880121,0.0018287813,0.000082072766,0.0019304327],"genre_scores_gemma":[0.99658835,0.0005225076,0.0019174296,0.00010487272,0.000025217189,0.00003579737,0.00049482053,0.000014517394,0.00029658683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979595,0.001188832,0.00009614576,0.00040703343,0.00014973115,0.00019867811],"domain_scores_gemma":[0.9978955,0.0010940057,0.0003171625,0.00038674654,0.00011688895,0.0001897201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033265662,0.0011034554,0.0008121732,0.0005692187,0.00046309177,0.0013165585,0.00037801862,0.00061666,0.00403807],"category_scores_gemma":[0.007192422,0.00042343547,0.0021782771,0.00062614435,0.0005119682,0.00061506225,0.0017069718,0.0011424408,0.00025637966],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002040642,0.00016747271,0.95748526,0.00026713972,0.004302926,0.00035683325,0.00054407906,0.001105283,0.0067819334,0.0010597429,0.00042982504,0.02545869],"study_design_scores_gemma":[0.000083937084,0.0005088423,0.986357,0.00011152482,0.0025582013,0.0003131298,0.00039074372,0.002979959,0.0014444399,0.0035646344,0.0016475284,0.00004001698],"about_ca_topic_score_codex":0.003928333,"about_ca_topic_score_gemma":0.004433599,"teacher_disagreement_score":0.00403807,"about_ca_system_score_codex":0.00030970448,"about_ca_system_score_gemma":0.0008918912,"threshold_uncertainty_score":0.017592788},"labels":[],"label_agreement":null},{"id":"W7116891756","doi":"10.1080/19490976.2025.2604867","title":"Microbes and medicines: interrelationships between pharmaceuticals and the gut microbiome","year":2025,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Microbiome; Gut flora; Gut microbiome; Drug; Human microbiome; Dysbiosis; Fecal bacteriotherapy; Drug development; Transcriptome","score_opus":0.010243180865856766,"score_gpt":0.30889585913731715,"score_spread":0.29865267827146036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7116891756","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0076881074,0.98291105,0.0018389673,0.002792294,0.0004528277,0.000010708565,0.000058542915,0.000018917366,0.0042287135],"genre_scores_gemma":[0.04233818,0.9500838,0.0029301876,0.001164396,0.0005604272,0.00001722118,0.000056311368,0.000006291451,0.002843279],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99966574,0.00012232772,0.000026584388,0.000052074927,0.000093844705,0.000039543702],"domain_scores_gemma":[0.99976236,0.000119161065,0.000056058045,0.0000065416075,0.000032859047,0.000023083798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003711368,0.00038898093,0.0006387204,0.0008080925,0.0003189797,0.0017850039,0.00018614765,0.00075637334,0.0019093615],"category_scores_gemma":[0.00054992456,0.00017190937,0.00031288236,0.000870117,0.00055317,0.0010893325,0.0008848429,0.0008509341,0.0003681189],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002721217,0.00008859243,0.0047053043,0.010717554,0.00028431343,0.0011599014,0.00065546966,0.0009907023,0.059499595,0.030165885,0.012676044,0.8787846],"study_design_scores_gemma":[0.000020848905,0.00066189567,0.02493551,0.0047918176,0.0003388531,0.004168734,0.0013452878,0.00082303624,0.016110288,0.023291778,0.9234252,0.00008670184],"about_ca_topic_score_codex":0.00077571656,"about_ca_topic_score_gemma":0.0014448996,"teacher_disagreement_score":0.0019093615,"about_ca_system_score_codex":0.00046351043,"about_ca_system_score_gemma":0.00074973644,"threshold_uncertainty_score":0.006387472},"labels":[],"label_agreement":null}]}