{"meta":{"query_hash":"2330d1450b49","filters":{"venue":"Infection and Immunity"},"cohort_total":817,"direct_labels_cover":1,"predictions_cover":817,"exported":817,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/2330d1450b49","api":"https://metacan.xera.ac/api/v1/cohort?venue=Infection+and+Immunity"},"results":[{"id":"W16369016","doi":"10.1128/iai.74.1.594-601.2006","title":"Intelligent computer-aided process planning for rotationally symmetrical parts using neural network and expert system","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Manufacturing Process and Optimization","field":"Engineering","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Polytechnique Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institute on Aging","keywords":"Artificial neural network; Expert system; Machining; Computer science; Process (computing); Artificial intelligence; Machine learning; Selection (genetic algorithm); Domain (mathematical analysis); Set (abstract data type); Feature (linguistics); Computer-aided process planning; Domain knowledge; Software; Engineering","score_opus":0.03044903905732201,"score_gpt":0.27324335421186724,"score_spread":0.24279431515454522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W16369016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6436304,0.000435918,0.35538754,0.000009724643,0.00019875441,0.00013462864,9.355055e-7,0.0001351029,0.000067053654],"genre_scores_gemma":[0.99620163,0.000052929736,0.00342116,0.00003567494,0.00024265608,0.00001970686,0.000010651641,0.000011814176,0.0000037994103],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99958414,0.00001783394,0.00014927423,0.00008415899,0.000050010156,0.00011456984],"domain_scores_gemma":[0.9997818,0.0000537596,0.000031813375,0.00004488595,0.00004649456,0.00004126356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010333364,0.00008940084,0.000100970785,0.000063861065,0.0002036731,0.00007629424,0.00002193578,0.000048262656,0.000002626192],"category_scores_gemma":[0.000010493404,0.00008803512,0.0000167216,0.000087752436,0.000012013872,0.00017206196,0.000013972552,0.000085277316,3.0345123e-7],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000009278192,0.000008959176,0.0016547818,0.00016569873,0.0000131821735,1.3999862e-7,0.00034669804,0.9762325,0.000012165665,0.00006404387,0.000026405796,0.021466125],"study_design_scores_gemma":[0.00018434011,0.00003297164,0.006845314,0.00007114091,0.00000790809,0.000018829276,0.000038643608,0.99135333,0.00059398974,0.000017842423,0.0007342768,0.00010141911],"about_ca_topic_score_codex":0.000028113844,"about_ca_topic_score_gemma":0.0000032842406,"teacher_disagreement_score":0.35257125,"about_ca_system_score_codex":0.000039551825,"about_ca_system_score_gemma":0.0000050084236,"threshold_uncertainty_score":0.3589968},"labels":[],"label_agreement":null},{"id":"W1747642895","doi":"10.1128/iai.00415-15","title":"Parasite Manipulation of the Invariant Chain and the Peptide Editor H2-DM Affects Major Histocompatibility Complex Class II Antigen Presentation during Toxoplasma gondii Infection","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Carleton University; Ste. Anne's Hospital","funders":"National Cancer Institute","keywords":"Biology; CD74; Antigen presentation; Major histocompatibility complex; Antigen processing; Antigen; Immunology; MHC class II; MHC class I; Toxoplasma gondii; Virology; T cell; Immune system; Antibody","score_opus":0.03371188477807991,"score_gpt":0.28395024427681825,"score_spread":0.25023835949873835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1747642895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960787,0.00021963721,0.00010094432,0.0005248155,0.0014027123,0.0011368071,0.000015444755,0.00005935419,0.00046153532],"genre_scores_gemma":[0.9990215,0.00015199312,0.000012612321,0.000026668391,0.00013389943,0.000077047225,0.000041070285,0.000010359272,0.0005248925],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99759996,0.0015323843,0.00031097396,0.00022400645,0.00010172888,0.00023094796],"domain_scores_gemma":[0.9988277,0.00033311563,0.00027804438,0.00034314697,0.00018403756,0.000033952485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011423891,0.00018290574,0.0002929351,0.000120071985,0.001207079,0.000034378114,0.00010076447,0.0001644524,0.000030212976],"category_scores_gemma":[0.0007019603,0.00011913266,0.0000777593,0.00023437267,0.0007276469,0.0002499927,0.00039318993,0.00047119183,0.000009702938],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012770478,0.0002973157,0.8221623,0.0001776099,0.00033096017,4.983257e-7,0.005667673,0.00014049186,0.1639611,0.0006691723,0.004175099,0.0011407805],"study_design_scores_gemma":[0.003597195,0.00020537614,0.96721,0.000035084504,0.000044359025,0.000044689164,0.00021193836,0.00029300054,0.023846297,0.00029336565,0.004095947,0.00012275102],"about_ca_topic_score_codex":0.0073756725,"about_ca_topic_score_gemma":0.0034986914,"teacher_disagreement_score":0.14504774,"about_ca_system_score_codex":0.00016027613,"about_ca_system_score_gemma":0.00005120378,"threshold_uncertainty_score":0.9992343},"labels":[],"label_agreement":null},{"id":"W1828780954","doi":"10.1128/iai.01008-12","title":"The Polysaccharide Capsule of Campylobacter jejuni Modulates the Host Immune Response","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Campylobacter jejuni; Microbiology; Immune system; Capsule; Mutant; Biology; Wild type; Polysaccharide; Bacterial capsule; Bacteria; Immunology; Biochemistry; Gene","score_opus":0.021013376899372473,"score_gpt":0.23987379943291529,"score_spread":0.21886042253354282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1828780954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962372,0.0011708561,0.0000015455907,0.0019323229,0.00032266838,0.000108521774,0.000009446961,0.000026069029,0.00019134661],"genre_scores_gemma":[0.9988515,0.00060695456,0.0000019981217,0.00023808218,0.000107145264,0.000009225807,0.000005725003,7.8169546e-7,0.00017860944],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998605,0.0007789909,0.00022443464,0.00008060634,0.00006646238,0.00024447386],"domain_scores_gemma":[0.9986943,0.0009545317,0.00012689197,0.0001181313,0.00005392149,0.000052228832],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016516738,0.00009892576,0.00013404574,0.000007897743,0.00064476917,0.00003101793,0.00014329862,0.00008067332,0.00011734585],"category_scores_gemma":[0.000311596,0.000027213828,0.0000804657,0.00017244199,0.00021457727,0.00012120988,0.00010044381,0.00018623463,0.000015757192],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012989281,0.00006825229,0.09969022,0.0000015898243,0.000022985909,6.9774785e-8,0.0002564447,4.5799428e-7,0.88734585,0.00028516416,0.00012405572,0.012075036],"study_design_scores_gemma":[0.000063338055,0.000117104864,0.96117085,0.0000045004153,0.000010272153,0.00001836246,0.00030272309,0.0000088953575,0.015941294,0.00016254475,0.022133095,0.000067020475],"about_ca_topic_score_codex":0.0047083925,"about_ca_topic_score_gemma":0.00020658673,"teacher_disagreement_score":0.8714045,"about_ca_system_score_codex":0.0000132447285,"about_ca_system_score_gemma":0.0000044168764,"threshold_uncertainty_score":0.71177125},"labels":[],"label_agreement":null},{"id":"W1831160532","doi":"10.1128/iai.01077-15","title":"Periodontal Pathogens Invade Gingiva and Aortic Adventitia and Elicit Inflammasome Activation in αvβ6 Integrin-Deficient Mice","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research","keywords":"Tannerella forsythia; Porphyromonas gingivalis; Biology; Periodontitis; Immunology; Inflammation; Periodontal pathogen; Fusobacterium nucleatum; Junctional epithelium; Microbiology; Pathology; Connective tissue; Internal medicine; Medicine","score_opus":0.032810485016913096,"score_gpt":0.29449969099753437,"score_spread":0.2616892059806213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1831160532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843496,0.00033517205,0.00006542803,0.00006918322,0.00021912478,0.00017475904,0.000009007049,0.000032583328,0.0006597929],"genre_scores_gemma":[0.9993565,0.00022969299,0.0000197766,0.000051664472,0.0000317038,0.000011921675,0.000032967888,0.00000910618,0.0002566317],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990794,0.00024528275,0.0002058111,0.00019634554,0.00007535841,0.00019778675],"domain_scores_gemma":[0.9995927,0.000054557066,0.00005707339,0.00012386311,0.00007557974,0.00009620462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004473246,0.00012405503,0.00016825163,0.00019250515,0.0001881378,0.00011287556,0.000046535733,0.00015478776,0.00008073095],"category_scores_gemma":[0.00018730003,0.00012142503,0.000024319006,0.00017399386,0.00017616653,0.00032030375,0.00016525322,0.0004558328,0.000030490299],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009819883,0.00008367459,0.85294765,0.0000505569,0.000017128325,0.000008728619,0.0013405659,0.000003344677,0.13897903,0.0001290861,0.00006118235,0.0062808446],"study_design_scores_gemma":[0.0009033784,0.00015586709,0.9905317,0.000056124518,0.00000814144,0.00014979324,0.00061955256,0.00015253495,0.0044315667,0.00012686025,0.0027185795,0.00014594627],"about_ca_topic_score_codex":0.0057122344,"about_ca_topic_score_gemma":0.0039819614,"teacher_disagreement_score":0.137584,"about_ca_system_score_codex":0.00007460192,"about_ca_system_score_gemma":0.00004024534,"threshold_uncertainty_score":0.86352277},"labels":[],"label_agreement":null},{"id":"W1831670608","doi":"10.1128/iai.00201-15","title":"Vitamin A-Deficient Hosts Become Nonsymptomatic Reservoirs of Escherichia coli-Like Enteric Infections","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antioxidant Activity and Oxidative Stress","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal General Hospital","funders":"National Institute of Neurological Disorders and Stroke; National Center for Complementary and Integrative Health; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases","keywords":"Citrobacter rodentium; Biology; Escherichia coli infection; Inflammation; Microbiology; Immunology; Vitamin A deficiency; Escherichia coli; Vitamin; Clearance; Enterobacteriaceae; Chronic infection; Immune system; Retinol; Medicine; Gene","score_opus":0.03197524023968567,"score_gpt":0.2948258505400715,"score_spread":0.2628506103003858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1831670608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99322975,0.000092773385,0.0013715378,0.00016957229,0.00033379218,0.00025470724,0.000009086472,0.0000743662,0.004464399],"genre_scores_gemma":[0.9992211,0.0001313237,0.00011340028,0.0000741978,0.000036243386,0.000016307935,0.000019365076,0.000011166238,0.00037688622],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991013,0.00018563175,0.0002463775,0.00013470594,0.00017673877,0.00015525514],"domain_scores_gemma":[0.9991545,0.00009125501,0.00013832982,0.0002483032,0.00022618398,0.0001413906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003494901,0.00013258848,0.00027847444,0.0002044653,0.00015579013,0.000020317375,0.000040151506,0.00008719225,0.000066827015],"category_scores_gemma":[0.00027984957,0.00012059967,0.000076320626,0.00043706768,0.00018939486,0.00020907901,0.00008606971,0.000273191,0.000023941218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003122644,0.0021431288,0.91906476,0.00039966017,0.00021420656,0.0000063509333,0.0024202333,0.000046049292,0.070069864,0.00033543032,0.0009922734,0.0039957915],"study_design_scores_gemma":[0.0016743466,0.0010371681,0.98239887,0.00017257822,0.00009226578,0.000065024775,0.0006638634,0.00049205247,0.009196944,0.00006339111,0.0039979494,0.00014556594],"about_ca_topic_score_codex":0.0016366547,"about_ca_topic_score_gemma":0.00016625818,"teacher_disagreement_score":0.06333411,"about_ca_system_score_codex":0.000076027434,"about_ca_system_score_gemma":0.000079175334,"threshold_uncertainty_score":0.49179116},"labels":[],"label_agreement":null},{"id":"W1869499770","doi":"10.1128/iai.00643-15","title":"Conservation of the Host-Interacting Proteins Tp0750 and Pallilysin among Treponemes and Restriction of Proteolytic Capacity to Treponema pallidum","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Treponema; Biology; Microbiology; Haemophilus ducreyi; Virulence; Bacterial adhesin; Syphilis; Pathogen; Sexually transmitted disease; Virology; Gene; Genetics; Haemophilus influenzae; Pasteurellaceae; Antibiotics","score_opus":0.059280532969920176,"score_gpt":0.2868370488550848,"score_spread":0.22755651588516465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1869499770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980818,0.00007352567,0.00003437652,0.0005742958,0.00007121819,0.0009033765,0.0000042641605,0.000015491829,0.00024164587],"genre_scores_gemma":[0.99964374,0.00008504258,0.000114242204,0.000043817396,0.000016630556,0.000060064707,0.0000027760225,0.0000056464305,0.00002805733],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99931353,0.00012750474,0.00024717426,0.000116696734,0.00012432637,0.00007076397],"domain_scores_gemma":[0.9992867,0.00009421571,0.00019548612,0.0001741009,0.00017557667,0.0000738936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003022565,0.00009027212,0.00019718813,0.000084771935,0.00009413394,0.000015865922,0.000014997826,0.000053518084,0.0000039686743],"category_scores_gemma":[0.00071811664,0.00006233122,0.000032213204,0.00017838876,0.00010550371,0.00010783923,0.00004193058,0.00011245695,2.4483e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010234014,0.00024160603,0.9787771,0.00009081488,0.000052767853,5.372247e-7,0.0016508927,0.0000021035157,0.017193608,0.00005160813,0.000017966559,0.001818671],"study_design_scores_gemma":[0.0009752852,0.00062470714,0.954823,0.0002786381,0.00008764759,0.00002682719,0.00042111022,0.00015290511,0.042373877,0.00007004269,0.00011540172,0.000050513932],"about_ca_topic_score_codex":0.013298317,"about_ca_topic_score_gemma":0.0011422726,"teacher_disagreement_score":0.025180269,"about_ca_system_score_codex":0.000043050888,"about_ca_system_score_gemma":0.000031044525,"threshold_uncertainty_score":0.99327224},"labels":[],"label_agreement":null},{"id":"W1965395910","doi":"10.1128/iai.01188-09","title":"Identification of a c-di-GMP-Regulated Polysaccharide Locus Governing Stress Resistance and Biofilm and Rugose Colony Formation in <i>Vibrio vulnificus</i>","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biofilm; Biology; Microbiology; Vibrio vulnificus; Vibrionaceae; Vibrio; Bacteria; Genetics","score_opus":0.006164794807153803,"score_gpt":0.24671198352769147,"score_spread":0.24054718872053765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965395910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990297,0.00045316928,0.00011137208,0.00007199534,0.00006021353,0.00015708087,0.00003734031,0.00000824298,0.00007088538],"genre_scores_gemma":[0.99840355,0.0013967396,0.00002364904,0.000009313832,0.000017302726,0.000012651551,0.000039026585,0.000005798118,0.00009195929],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939126,0.0000833894,0.00020651752,0.00014124841,0.00006757957,0.00011000378],"domain_scores_gemma":[0.99957895,0.000019406489,0.000124664,0.00015437738,0.00008743481,0.000035142057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028258475,0.00008471073,0.000106771346,0.000066946544,0.00012988884,0.000047221936,0.000037069527,0.000097090626,0.000002697958],"category_scores_gemma":[0.00020575718,0.000084635525,0.000014553486,0.00009920539,0.00015685947,0.000031505428,0.00010304105,0.00014703163,4.4177648e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009562368,0.000031877225,0.027016893,0.00007394854,0.000013778464,2.9680803e-7,0.00018483201,0.0000017162394,0.97101635,0.00002237829,0.000031325464,0.001511006],"study_design_scores_gemma":[0.00045700543,0.00006262959,0.3915199,0.00002441433,0.0000063862853,0.000008632941,0.00009898266,0.00010325315,0.60698605,0.000025887108,0.00063043315,0.00007640459],"about_ca_topic_score_codex":0.0006382071,"about_ca_topic_score_gemma":0.0037076788,"teacher_disagreement_score":0.36450303,"about_ca_system_score_codex":0.00001020825,"about_ca_system_score_gemma":0.000015899128,"threshold_uncertainty_score":0.34513366},"labels":[],"label_agreement":null},{"id":"W1966572047","doi":"10.1128/iai.01269-10","title":"ArcA-Regulated Glycosyltransferase Lic2B Promotes Complement Evasion and Pathogenesis of Nontypeable Haemophilus influenzae","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Haemophilus influenzae; Microbiology; Immune system; Signal transduction; Pathogenesis; Gene; Glycosyltransferase; Innate immune system; Complement system; Immunology; Mutant; Cell biology; Genetics","score_opus":0.040087390017347034,"score_gpt":0.25241577105094026,"score_spread":0.21232838103359322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966572047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982207,0.00046762064,0.00008660132,0.000025473077,0.00031830536,0.00024012901,0.00003061215,0.000059793303,0.0005507709],"genre_scores_gemma":[0.9993476,0.00043998015,0.000041482952,0.00002168846,0.000011674792,0.000014073289,0.000045335986,0.000009466325,0.00006866855],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992249,0.00018727778,0.00027013052,0.0001504627,0.000012437802,0.00015477772],"domain_scores_gemma":[0.99955624,0.00003809091,0.00008118463,0.00018505959,0.00011388349,0.000025564153],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022002113,0.00014169957,0.00022797936,0.00012548071,0.00029555595,0.000011656242,0.00004087643,0.00014563986,0.00081292744],"category_scores_gemma":[0.000030924173,0.00012144811,0.000046101337,0.00013057633,0.00012497543,0.00013099292,0.00006196429,0.00014192324,0.0000129510045],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024043689,0.0003263766,0.0664649,0.000056692737,0.000116825046,3.0977012e-7,0.0006343708,5.240256e-7,0.9188801,0.0004568461,0.000040879862,0.012781757],"study_design_scores_gemma":[0.0012813485,0.00061921286,0.6778221,0.00004718031,0.00006685495,0.000087755565,0.000055079363,0.0000066869975,0.31511617,0.0003498558,0.004400462,0.00014725905],"about_ca_topic_score_codex":0.007328946,"about_ca_topic_score_gemma":0.00039941492,"teacher_disagreement_score":0.6113572,"about_ca_system_score_codex":0.000012303789,"about_ca_system_score_gemma":0.000017601527,"threshold_uncertainty_score":0.99928135},"labels":[],"label_agreement":null},{"id":"W1966777766","doi":"10.1128/iai.00062-06","title":"<i>Porphyromonas gingivalis</i> Vesicles Enhance Attachment, and the Leucine-Rich Repeat BspA Protein Is Required for Invasion of Epithelial Cells by “ <i>Tannerella forsythia</i> ”","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; University at Buffalo; National Institutes of Health; University of Toronto","keywords":"Tannerella forsythia; Porphyromonas gingivalis; Biology; Treponema denticola; Forsythia; Microbiology; Virulence; Bacteroidaceae; Fusobacterium nucleatum; Cell; Bacterial outer membrane; Bacteria; Gene; Pathology","score_opus":0.014837278434809023,"score_gpt":0.2807015131431189,"score_spread":0.2658642347083099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966777766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615294,0.0011124073,0.0005168789,0.00031540633,0.0001995314,0.0007061971,0.00022598226,0.00002998658,0.00074067124],"genre_scores_gemma":[0.9947918,0.00044780527,0.000066738954,0.0001445026,0.00007230978,0.000058658337,0.00006322602,0.000014752873,0.004340194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879354,0.0003309993,0.0003312127,0.00023464377,0.000095018375,0.00021461325],"domain_scores_gemma":[0.9992179,0.00017415399,0.00017810697,0.00027595385,0.00012022722,0.00003360205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007243979,0.0001516153,0.00025706855,0.000051652136,0.00046866285,0.00006665663,0.00010350498,0.00015885946,0.00006166705],"category_scores_gemma":[0.00006715751,0.00011331931,0.00008425245,0.00013438094,0.00044136657,0.00016272496,0.000110858025,0.00024320447,0.000011131525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045046164,0.00009669405,0.0066440967,0.000107901324,0.000030764517,9.110285e-7,0.00012779947,0.000001124718,0.97938156,0.00028971545,0.011642129,0.0012268652],"study_design_scores_gemma":[0.0019247216,0.00020934864,0.006013762,0.000047946887,0.000025684281,0.000021785083,0.000032956377,0.000025619154,0.97231555,0.001325904,0.017923875,0.00013286456],"about_ca_topic_score_codex":0.006422492,"about_ca_topic_score_gemma":0.00031011703,"teacher_disagreement_score":0.0070660035,"about_ca_system_score_codex":0.000020637799,"about_ca_system_score_gemma":0.000021842476,"threshold_uncertainty_score":0.97089297},"labels":[],"label_agreement":null},{"id":"W1967221794","doi":"10.1128/iai.70.10.5635-5646.2002","title":"<i>N</i> -Acylhomoserine Lactones Undergo Lactonolysis in a pH-, Temperature-, and Acyl Chain Length-Dependent Manner during Growth of <i>Yersinia pseudotuberculosis</i> and <i>Pseudomonas aeruginosa</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":610,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institute of Infection and Immunity","funders":"Medical Research Council; European Commission; Biotechnology and Biological Sciences Research Council; Deutsche Forschungsgemeinschaft; University of Wisconsin-Madison","keywords":"Yersinia pseudotuberculosis; Biology; Pseudomonas aeruginosa; Microbiology; Yersinia; Chain (unit); Bacteria; Biochemistry; Genetics; Gene","score_opus":0.006907467697895985,"score_gpt":0.2003362205359841,"score_spread":0.1934287528380881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967221794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980964,0.00088535476,0.0000020720117,0.00033246164,0.00011118307,0.00014008266,0.000021662097,0.000016262444,0.0003944953],"genre_scores_gemma":[0.9921963,0.007393441,0.00005117412,0.00014735186,0.00006563052,0.0000048731517,0.000028007276,0.000017896078,0.00009532744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897575,0.00012803586,0.00029293774,0.00030972515,0.00007670943,0.0002168254],"domain_scores_gemma":[0.99952364,0.000022599112,0.00010728797,0.00020968384,0.000056140398,0.00008064584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019588144,0.00021574249,0.0002626466,0.00009670125,0.00016514954,0.000056015244,0.000045665638,0.00020444434,0.000011468825],"category_scores_gemma":[0.000043796543,0.00020692837,0.000047190068,0.00013812358,0.00014009712,0.00003115624,0.00015696908,0.00020655118,8.344176e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016018335,0.000116057,0.022675343,0.000078289784,0.000048429716,0.0000029851067,0.00018301832,0.0000017846593,0.97573936,0.000022067885,0.000039763985,0.00093269267],"study_design_scores_gemma":[0.0022355106,0.00026773132,0.13301407,0.00006215347,0.000039145496,0.00019894543,0.00014188775,0.000040265797,0.86293924,0.0000133997655,0.00072348287,0.0003241566],"about_ca_topic_score_codex":0.0010450269,"about_ca_topic_score_gemma":0.0005105826,"teacher_disagreement_score":0.11280013,"about_ca_system_score_codex":0.000013369892,"about_ca_system_score_gemma":0.0000089255445,"threshold_uncertainty_score":0.8438294},"labels":[],"label_agreement":null},{"id":"W1967533505","doi":"10.1128/iai.05679-11","title":"DegP Is Involved in Cpx-Mediated Posttranscriptional Regulation of the Type III Secretion Apparatus in Enteropathogenic Escherichia coli","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Department of Education of Guangdong Province","keywords":"Periplasmic space; Biology; DsbA; Chaperone (clinical); Escherichia coli; Secretion; Proteases; Enteropathogenic Escherichia coli; Microbiology; Bacterial outer membrane; Biochemistry; Gene","score_opus":0.020048024407707747,"score_gpt":0.26927822279122104,"score_spread":0.2492301983835133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967533505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851596,0.0007873005,0.000047150028,0.00005370251,0.0001489591,0.00019074255,0.0000055635096,0.000004186937,0.00024640272],"genre_scores_gemma":[0.9989295,0.0007891841,0.000022624383,0.000090946145,0.000031930973,0.000017185796,0.000050688373,0.0000056557533,0.000062274965],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992644,0.00024682865,0.00016558306,0.00009150066,0.000088629495,0.0001430363],"domain_scores_gemma":[0.9996759,0.000014282508,0.000058596976,0.00013760883,0.00008463701,0.000028956603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036471442,0.00007730614,0.00009004934,0.000054063057,0.00006611515,0.0000067245546,0.000048511527,0.00010094553,0.00001913302],"category_scores_gemma":[0.00013403477,0.00006548191,0.000033798766,0.00027905512,0.00008827345,0.000014401796,0.000071797964,0.0001618124,0.0000015780631],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009286567,0.000077926146,0.3774569,0.000011118288,0.0000096503845,2.2721476e-8,0.00021315485,0.000006228527,0.6219992,0.000019431574,0.000035578414,0.000077918994],"study_design_scores_gemma":[0.0005762874,0.00009220271,0.95050585,0.00001648025,0.0000046598693,0.000001215626,0.00006938774,0.0001973793,0.047094166,0.000023651977,0.0013561877,0.000062506406],"about_ca_topic_score_codex":0.00048512578,"about_ca_topic_score_gemma":0.0005763491,"teacher_disagreement_score":0.57490504,"about_ca_system_score_codex":0.000030575888,"about_ca_system_score_gemma":0.00004316078,"threshold_uncertainty_score":0.26702747},"labels":[],"label_agreement":null},{"id":"W1967545780","doi":"10.1128/iai.05478-11","title":"The Deubiquitinase Activity of the Salmonella Pathogenicity Island 2 Effector, SseL, Prevents Accumulation of Cellular Lipid Droplets","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Endoplasmic Reticulum Stress and Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of Victoria; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Secretion; Pathogenicity island; Salmonella; Salmonella enterica; Cell biology; Microbiology; Bacteria; Genetics; Biochemistry","score_opus":0.022937504384077764,"score_gpt":0.2634619933456585,"score_spread":0.24052448896158074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967545780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998415,0.00018697444,0.000463386,0.0000050767876,0.00014348197,0.00018743896,0.000023542454,0.0000038904227,0.00057123596],"genre_scores_gemma":[0.9995718,0.0003134099,0.0000069677794,0.000009141795,0.000026185413,0.000009014771,0.000011683377,0.0000060605703,0.000045738103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992951,0.00028650922,0.00014344054,0.00010463036,0.000077479555,0.000092837276],"domain_scores_gemma":[0.9993855,0.000033963544,0.00016527544,0.00031750416,0.0000634664,0.00003430768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021503502,0.00008754393,0.00009273144,0.0000129007485,0.00018263319,0.000007710699,0.00008653318,0.000074194926,0.000011379569],"category_scores_gemma":[0.00013712153,0.00005518715,0.00009455896,0.000057446254,0.00013766292,0.0000060914604,0.000115112794,0.00008237475,5.429545e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017215521,0.00017312018,0.12612207,0.000049047845,0.000035176166,1.7405571e-7,0.00008360608,0.000008526585,0.87095696,0.000028507686,0.00003869429,0.0023319786],"study_design_scores_gemma":[0.00028718833,0.00012234633,0.33519447,0.000013684632,0.000026185637,0.0000022763809,0.0000109079365,0.000070049806,0.6639208,0.00004643206,0.0002571997,0.000048463146],"about_ca_topic_score_codex":0.000636508,"about_ca_topic_score_gemma":0.00014538105,"teacher_disagreement_score":0.20907241,"about_ca_system_score_codex":0.0000050899735,"about_ca_system_score_gemma":0.000026916116,"threshold_uncertainty_score":0.22504666},"labels":[],"label_agreement":null},{"id":"W1969505329","doi":"10.1128/iai.72.5.2889-2898.2004","title":"<i>Helicobacter pylori</i>Induces Apoptosis of Macrophages in Association with Alterations in the Mitochondrial Pathway","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Apoptosis; Biology; Annexin; Cytochrome c; CagA; Molecular biology; Helicobacter pylori; Microbiology; Biochemistry","score_opus":0.013654934633608735,"score_gpt":0.2502051244153922,"score_spread":0.2365501897817835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969505329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684423,0.000036599802,0.000054126664,0.0022177873,0.00017642402,0.00028332666,0.000005879653,0.00001684843,0.0003647808],"genre_scores_gemma":[0.99920243,0.00014844413,0.00008560871,0.00041953055,0.00005518331,0.000044465673,0.000015359108,0.0000063353286,0.000022627673],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917066,0.00018006572,0.0002533703,0.00011232478,0.00012996733,0.00015363246],"domain_scores_gemma":[0.9995396,0.00008274332,0.00011052705,0.00014015095,0.000104801664,0.00002216345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026758885,0.00010412728,0.0002027598,0.00015840562,0.00009250596,0.000018398052,0.00003527855,0.00009780637,0.0000072309494],"category_scores_gemma":[0.00016015868,0.00007090514,0.00003014152,0.00033088707,0.00006804522,0.0001482897,0.000020616864,0.0004197637,0.0000032371747],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024920356,0.00044509626,0.95715064,0.00002145566,0.000106494175,0.000003100366,0.004360163,0.00003846789,0.036726136,0.000036429563,0.000024339277,0.0008384587],"study_design_scores_gemma":[0.0030343041,0.00060333614,0.97321343,0.00008918086,0.000041640546,0.00001990698,0.00039616646,0.0000018361314,0.022271872,0.000046687586,0.00022768356,0.00005394847],"about_ca_topic_score_codex":0.0023694027,"about_ca_topic_score_gemma":0.0017719553,"teacher_disagreement_score":0.016062783,"about_ca_system_score_codex":0.00013260817,"about_ca_system_score_gemma":0.00004068103,"threshold_uncertainty_score":0.3581844},"labels":[],"label_agreement":null},{"id":"W1970025115","doi":"10.1128/iai.00453-09","title":"Macrophage-Mediated Responses to<i>Candida albicans</i>in Mice Expressing the Human Immunodeficiency Virus Type 1 Transgene","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Candida albicans; Macrophage; Microbiology; Corpus albicans; Immunology; Monocyte; Transgene; Phagocytosis; Virology; Molecular biology; In vitro","score_opus":0.021128771123492356,"score_gpt":0.30203471877342813,"score_spread":0.28090594764993576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970025115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99517506,0.00060672,0.000056028326,0.0008913889,0.00016651268,0.0003681392,0.0000071671393,0.00009624541,0.0026327453],"genre_scores_gemma":[0.99800175,0.00029902515,0.000022004155,0.0010113687,0.000026848185,0.000016481426,0.000012063445,0.00001179599,0.0005986352],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989873,0.00016882036,0.00026589594,0.00020003523,0.00014778427,0.00023017095],"domain_scores_gemma":[0.99941796,0.00009392919,0.00005562095,0.00026703524,0.0000622607,0.00010320703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028996952,0.00016866629,0.00021675845,0.00020348266,0.0004500214,0.000054341297,0.000059661765,0.00008027777,0.00010891559],"category_scores_gemma":[0.00012892032,0.00012424326,0.000059015805,0.00052547426,0.00007043363,0.00008412104,0.000018608795,0.0003473024,0.000035650053],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045751262,0.00038740505,0.0057655354,0.000008871507,0.000020441123,0.000023823533,0.00072343886,0.000009646357,0.97384155,0.000023038778,0.00002891353,0.018709805],"study_design_scores_gemma":[0.0015584516,0.001042041,0.9147961,0.000072759525,0.000044213528,0.00019681876,0.00009563925,0.000047158566,0.07528487,0.000041167186,0.006677744,0.0001430326],"about_ca_topic_score_codex":0.0021101409,"about_ca_topic_score_gemma":0.00021740697,"teacher_disagreement_score":0.90903056,"about_ca_system_score_codex":0.00011707254,"about_ca_system_score_gemma":0.00004791707,"threshold_uncertainty_score":0.5066493},"labels":[],"label_agreement":null},{"id":"W1970083984","doi":"10.1128/iai.00288-12","title":"Intestinal Epithelial Cells Modulate Antigen-Presenting Cell Responses to Bacterial DNA","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Biology; Cytokine; Secretion; Antigen-presenting cell; Interleukin 12; Antigen; Molecular biology; Immune system; T cell; Cytotoxic T cell; Immunology; Microbiology; In vitro; Endocrinology","score_opus":0.018822965751844046,"score_gpt":0.2545731923582536,"score_spread":0.23575022660640954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970083984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98503476,0.00012597698,0.0006038369,0.00004159304,0.010294557,0.00018082622,0.0000056249214,0.00012241807,0.003590417],"genre_scores_gemma":[0.9919996,0.00008812709,0.000048904287,0.00016650787,0.00017599775,0.000011864668,0.00004972004,0.000016966456,0.0074422695],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872273,0.00042481752,0.00028051814,0.00016966801,0.00003189161,0.00037039895],"domain_scores_gemma":[0.9993766,0.00013639622,0.00011199472,0.00022787608,0.00009243783,0.0000547029],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00047762904,0.00017984411,0.00018292431,0.00020586654,0.00050024426,0.000052674102,0.00007529918,0.00016233958,0.0017230435],"category_scores_gemma":[0.00017118239,0.00017254785,0.00007919108,0.00014892452,0.00007835862,0.0003854685,0.00014164847,0.00040222262,0.0016577196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047087498,0.00019316771,0.013133431,0.0000103606135,0.000028623701,3.1784666e-7,0.0006186631,0.0000022715583,0.98159224,0.000041376337,0.0020804217,0.00182823],"study_design_scores_gemma":[0.00049677567,0.00014897612,0.13405657,0.000011451296,0.000014574494,0.00006750098,0.00010081908,0.000004645225,0.6750889,0.0000068529644,0.18985197,0.00015097811],"about_ca_topic_score_codex":0.00080180605,"about_ca_topic_score_gemma":0.000010371278,"teacher_disagreement_score":0.30650336,"about_ca_system_score_codex":0.000042838732,"about_ca_system_score_gemma":0.000020428071,"threshold_uncertainty_score":0.9991895},"labels":[],"label_agreement":null},{"id":"W1970501943","doi":"10.1128/iai.74.4.2457-2461.2006","title":"Posttranslational Regulation of <i>Mycobacterium tuberculosis</i> Extracytoplasmic-Function Sigma Factor σ <sup>L</sup> and Roles in Virulence and in Global Regulation of Gene Expression","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Ministero dell’Istruzione, dell’Università e della Ricerca","keywords":"Biology; Sigma factor; Virulence; Mycobacterium tuberculosis; Virulence factor; Gene expression; Function (biology); Regulation of gene expression; Microbiology; Gene; Bacterial protein; Genetics; Tuberculosis; Promoter","score_opus":0.014384765336676179,"score_gpt":0.27542895628468195,"score_spread":0.2610441909480058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970501943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980153,0.00055468595,0.00069661223,0.00021488243,0.000027093523,0.00025501574,0.000027766477,0.000013911637,0.00019475141],"genre_scores_gemma":[0.9990101,0.000526252,0.00026646993,0.00003077367,0.000031910135,0.000008696252,0.00011087975,0.0000057573816,0.000009176682],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99878556,0.00027501237,0.00045168732,0.00019311966,0.00014775117,0.00014687853],"domain_scores_gemma":[0.9994579,0.00014730732,0.00011684155,0.00012433306,0.00010089171,0.000052731317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003972788,0.00011866065,0.00028043563,0.00020852232,0.000056813806,0.000008978052,0.00001837945,0.00017457486,0.000033028467],"category_scores_gemma":[0.0001433493,0.00011022987,0.00003290795,0.0002311228,0.00013672473,0.0003092016,0.000024210289,0.0001754486,3.754921e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054913433,0.00009978725,0.59591305,0.00008188476,0.000006935719,2.403048e-7,0.00007884372,0.0005839599,0.39921665,0.00006494954,0.00001027078,0.0033943064],"study_design_scores_gemma":[0.0013588184,0.00021787558,0.95609576,0.00015216116,0.000016119086,0.000040747927,0.00003466201,0.006905161,0.034171395,0.0008728132,0.00005830971,0.00007617128],"about_ca_topic_score_codex":0.0028447355,"about_ca_topic_score_gemma":0.0005719326,"teacher_disagreement_score":0.36504525,"about_ca_system_score_codex":0.00005961997,"about_ca_system_score_gemma":0.000031393007,"threshold_uncertainty_score":0.44950438},"labels":[],"label_agreement":null},{"id":"W1973073889","doi":"10.1128/iai.69.9.5375-5384.2001","title":"Structural and Genetic Analyses of O Polysaccharide from <i>Actinobacillus actinomycetemcomitans</i> Serotype f","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Actinobacillus; Biology; Serotype; Microbiology; Transposable element; Gene cluster; Rhamnose; Mutant; Plasmid; Strain (injury); Molecular biology; Gene; Virology; Bacteria; Genetics; Polysaccharide; Biochemistry","score_opus":0.057161314934646004,"score_gpt":0.3414184590244093,"score_spread":0.2842571440897633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973073889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99822885,0.0007472282,0.000039177572,0.00002352364,0.00023719898,0.000077502744,0.000046792113,0.000025806174,0.000573901],"genre_scores_gemma":[0.9990469,0.0005683245,0.00005734968,0.000033125078,0.00004373172,0.0000020530326,0.000017488552,0.0000062705635,0.00022473455],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992934,0.00018971735,0.0001808515,0.00014408732,0.00005459125,0.00013736423],"domain_scores_gemma":[0.9995314,0.00009666866,0.00007657296,0.00017888588,0.00006347836,0.000052982825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007399893,0.000101996404,0.0001894704,0.000076607816,0.0002052036,0.000044333006,0.00006057845,0.000117582225,0.00084097876],"category_scores_gemma":[0.000062561914,0.00009138984,0.00004285466,0.00013693247,0.00015924496,0.0001461276,0.00008418367,0.00025989366,0.000020705878],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008088856,0.000012255227,0.6678584,0.000009393981,0.000054378437,0.000008505824,0.000065290966,0.0000021445212,0.3248304,0.0000032741925,0.000029989522,0.0070450087],"study_design_scores_gemma":[0.0004249816,0.000075622294,0.9573408,0.000010994183,0.000027198661,0.00029007604,0.000060508217,0.000036952883,0.041021496,0.00010052161,0.00051896967,0.00009187731],"about_ca_topic_score_codex":0.028593432,"about_ca_topic_score_gemma":0.0018654579,"teacher_disagreement_score":0.28948236,"about_ca_system_score_codex":0.000014488119,"about_ca_system_score_gemma":0.000016128359,"threshold_uncertainty_score":0.97787523},"labels":[],"label_agreement":null},{"id":"W1973428805","doi":"10.1128/iai.06370-11","title":"Both Phthiocerol Dimycocerosates and Phenolic Glycolipids Are Required for Virulence of Mycobacterium marinum","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China","keywords":"Mycobacterium marinum; Virulence; Biology; Glycolipid; Microbiology; Mycobacterium tuberculosis; Mycobacterium; Tuberculosis; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.03393338146717286,"score_gpt":0.30771278640252453,"score_spread":0.2737794049353517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973428805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976189,0.0005409344,0.000095701005,0.00021464286,0.00020646541,0.00049082335,0.000039685052,0.00004334704,0.0007494687],"genre_scores_gemma":[0.9975726,0.001654451,0.00012709679,0.00019267532,0.00019610162,0.000092361326,0.000026994556,0.0000151059585,0.00012258944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99915946,0.00007853451,0.00021004134,0.00013061044,0.00011743953,0.00030389504],"domain_scores_gemma":[0.99911803,0.00018810038,0.00010807585,0.00021642969,0.00013197117,0.00023741447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003681511,0.00013339633,0.00028147543,0.00011275589,0.00015495786,0.0000291328,0.00003471028,0.00013754389,0.00011653226],"category_scores_gemma":[0.00047682537,0.00011503979,0.0000611026,0.00013059976,0.00014245862,0.0003110431,0.000085903666,0.00021157983,0.0000055030837],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005103962,0.00030454286,0.90659934,0.00063864666,0.000057813057,3.3831373e-7,0.0003113222,4.954808e-8,0.08529881,0.00009742931,0.00049613137,0.0056851995],"study_design_scores_gemma":[0.0013934782,0.00059740426,0.9656388,0.00011956809,0.00006223777,0.000040515843,0.00009503895,0.00003067907,0.02468813,0.00007468629,0.0071512987,0.00010816767],"about_ca_topic_score_codex":0.0008622421,"about_ca_topic_score_gemma":0.000025219024,"teacher_disagreement_score":0.060610674,"about_ca_system_score_codex":0.00003435771,"about_ca_system_score_gemma":0.000030625168,"threshold_uncertainty_score":0.46911862},"labels":[],"label_agreement":null},{"id":"W1973779126","doi":"10.1128/iai.69.8.4874-4883.2001","title":"Characterization of a Stress-Induced Alternate Sigma Factor, RpoS, of <i>Coxiella burnetii</i> and Its Expression during the Development Cycle","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Allergy and Infectious Diseases","keywords":"rpoS; Sigma factor; Coxiella burnetii; Biology; Complementation; Molecular biology; Gene expression; Genetics; Gene; Mutant; Microbiology; Promoter","score_opus":0.018159576544034356,"score_gpt":0.2618831833995556,"score_spread":0.24372360685552122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973779126","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99880916,0.000049077633,0.00007347227,0.000018254388,0.00007360272,0.00022698619,0.0000053187036,0.000018173796,0.0007259632],"genre_scores_gemma":[0.9992304,0.0005386109,0.000011174373,0.00001013469,0.000017751532,0.000010493972,0.000014890024,0.000006857884,0.00015967307],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99948555,0.0000513247,0.00020454942,0.00008814876,0.00008886253,0.000081577906],"domain_scores_gemma":[0.9996087,0.000021446063,0.00013524762,0.00011475488,0.00008185124,0.00003800041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007021155,0.000088325025,0.00014493888,0.00007196231,0.00018124408,0.000008589359,0.000018669507,0.000051691033,0.000057041758],"category_scores_gemma":[0.000020951868,0.000060528935,0.0000246817,0.00010295655,0.000026080643,0.00009394706,0.000043171698,0.00010225933,0.0000012416269],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006590783,0.00017596298,0.2704664,0.00006741573,0.000041494895,0.0000010044723,0.0006122635,0.0000016639455,0.7250866,0.000007680632,1.6383558e-7,0.0034733973],"study_design_scores_gemma":[0.00057509576,0.000077746496,0.5563466,0.00009562526,0.000013714053,0.00002912263,0.000028820597,0.00003464376,0.44267017,0.0000038055318,0.000092691706,0.000031989905],"about_ca_topic_score_codex":0.00026328524,"about_ca_topic_score_gemma":0.000023132166,"teacher_disagreement_score":0.28588018,"about_ca_system_score_codex":0.000024375295,"about_ca_system_score_gemma":0.000019700248,"threshold_uncertainty_score":0.24682984},"labels":[],"label_agreement":null},{"id":"W1976314544","doi":"10.1128/iai.68.9.5401-5404.2000","title":"Vacuole Acidification Is Not Required for Survival of<i>Salmonella enterica</i>Serovar Typhimurium within Cultured Macrophages and Epithelial Cells","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of British Columbia","funders":"","keywords":"Bafilomycin; Phagosome; Salmonella enterica; Vacuole; Biology; Intracellular; Microbiology; Cell culture; Salmonella; Macrophage; Cell biology; Intracellular pH; Biochemistry; Cytoplasm; Bacteria; Autophagy; In vitro; Apoptosis","score_opus":0.0315007885915075,"score_gpt":0.2557774263207345,"score_spread":0.224276637729227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976314544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986544,0.00011153458,0.000028663206,0.00035945908,0.0002219504,0.00020905066,0.00012403094,0.000039403734,0.00025149874],"genre_scores_gemma":[0.99803126,0.00094482186,0.00008657485,0.00027101833,0.00011300413,0.000015401216,0.00005656501,0.00000152153,0.00047982263],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99906355,0.0002094912,0.0002784757,0.00022218237,0.00006500514,0.00016132141],"domain_scores_gemma":[0.99948347,0.0001754889,0.00013170918,0.00007380171,0.000072853116,0.00006270697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038300498,0.00013308448,0.00023644135,0.000012028415,0.00022517791,0.000029679413,0.00007638669,0.00013618509,0.00020286336],"category_scores_gemma":[0.00003892599,0.000062510306,0.00007279605,0.0001304699,0.000116045354,0.00010056915,0.00002906651,0.00009689168,0.0000112145335],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023256885,0.00007656624,0.008429588,0.00001504805,0.000020063071,1.6565e-7,0.0002920438,0.0000018147811,0.96256953,0.000043497697,0.00016675248,0.028152328],"study_design_scores_gemma":[0.0005626438,0.00061780296,0.5346965,0.000014010731,0.00004036295,0.000013857902,0.00019383931,0.00013846872,0.44089407,0.0006604098,0.021936527,0.00023149328],"about_ca_topic_score_codex":0.0009035367,"about_ca_topic_score_gemma":0.0000622295,"teacher_disagreement_score":0.52626693,"about_ca_system_score_codex":0.000008872631,"about_ca_system_score_gemma":0.0000037898103,"threshold_uncertainty_score":0.25490963},"labels":[],"label_agreement":null},{"id":"W1978831695","doi":"10.1128/iai.00193-11","title":"The Stringent Response Is Essential for Pseudomonas aeruginosa Virulence in the Rat Lung Agar Bead and Drosophila melanogaster Feeding Models of Infection","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"University of British Columbia; University of Washington","keywords":"Biology; Virulence; Pseudomonas aeruginosa; Mutant; Microbiology; Drosophila melanogaster; Pyocyanin; Bacteria; Genetics; Quorum sensing; Gene","score_opus":0.032307568708166014,"score_gpt":0.28917339413469095,"score_spread":0.2568658254265249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978831695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983422,0.00035218897,0.00067354256,0.00012796113,0.00010137816,0.0002838561,0.0000075066746,0.0000043035243,0.00010705523],"genre_scores_gemma":[0.9972535,0.0025672347,0.000023699233,0.000036831814,0.000036704827,0.000047108664,0.000004608103,0.0000052475457,0.000025084575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931014,0.00022508862,0.00013941526,0.00012397004,0.00006940585,0.00013196918],"domain_scores_gemma":[0.9996023,0.00007195174,0.00006206126,0.00016266991,0.00008098426,0.000020003223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078409526,0.000084862935,0.00008219694,0.00003455796,0.00030052403,0.0000348478,0.000058098984,0.000060946357,0.000001973254],"category_scores_gemma":[0.00014597035,0.00005675991,0.000039320483,0.000063272935,0.00015685677,0.000017584982,0.00012860606,0.00010236106,1.8233001e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017683605,0.00009067202,0.031060096,0.000056848065,0.00008021847,4.3285044e-7,0.00232712,0.000009632306,0.96249455,0.00015382143,0.00017938556,0.0017788563],"study_design_scores_gemma":[0.001139102,0.0007350071,0.46022385,0.000040786177,0.000033213677,0.000020626137,0.00033508483,0.0005894477,0.53452903,0.0005512577,0.001652513,0.00015007971],"about_ca_topic_score_codex":0.00044668544,"about_ca_topic_score_gemma":0.00017537233,"teacher_disagreement_score":0.42916375,"about_ca_system_score_codex":0.000010952664,"about_ca_system_score_gemma":0.000020312937,"threshold_uncertainty_score":0.2314602},"labels":[],"label_agreement":null},{"id":"W1978832792","doi":"10.1128/iai.72.9.5308-5314.2004","title":"Live <i>Lactobacillus reuteri</i> Is Essential for the Inhibitory Effect on Tumor Necrosis Factor Alpha-Induced Interleukin-8 Expression","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":284,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Lactobacillus reuteri; Biology; Tumor necrosis factor alpha; Inhibitory postsynaptic potential; Microbiology; Alpha (finance); Interleukin; Lactobacillus; Necrosis; Immunology; Cytokine; Bacteria; Endocrinology; Genetics; Medicine","score_opus":0.019049112150932922,"score_gpt":0.24313054549643867,"score_spread":0.22408143334550576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978832792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99831665,0.000034821067,0.000027045253,0.0004250592,0.00055125344,0.00040642236,0.00004583257,0.000052379008,0.00014055391],"genre_scores_gemma":[0.99908686,0.00004978674,0.0000059980316,0.0005941575,0.00016506188,0.000035283825,0.000017805765,0.0000015520922,0.00004350741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933404,0.00007463388,0.00014285516,0.00018474979,0.000090474285,0.00017322578],"domain_scores_gemma":[0.99955636,0.00018063521,0.00008149382,0.00008112759,0.000043712018,0.000056696692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015880214,0.00014845972,0.0001298443,0.000012327318,0.00061424857,0.00011283682,0.00010302476,0.000089486086,0.000071176284],"category_scores_gemma":[0.000046233414,0.000051257353,0.00011500089,0.00009435044,0.000054493976,0.0001100715,0.000084236926,0.000219368,0.00001511238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017529532,0.00012384061,0.00067162723,0.00001059432,0.0000189605,3.959368e-7,0.00032523862,0.0000010717362,0.9698865,0.0000230365,0.00012344628,0.028639996],"study_design_scores_gemma":[0.0007631882,0.0032766408,0.09401342,0.000100405945,0.000021603977,0.000007815607,0.000086537824,0.000018703066,0.8935475,0.00020119677,0.007766767,0.00019625176],"about_ca_topic_score_codex":0.0010632308,"about_ca_topic_score_gemma":0.00014123395,"teacher_disagreement_score":0.0933418,"about_ca_system_score_codex":0.00006275452,"about_ca_system_score_gemma":0.000009233368,"threshold_uncertainty_score":0.47243658},"labels":[],"label_agreement":null},{"id":"W1980612849","doi":"10.1128/iai.05761-11","title":"The Type III System-Secreted Effector EspZ Localizes to Host Mitochondria and Interacts with the Translocase of Inner Mitochondrial Membrane 17b","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Secretion; Type three secretion system; Translocase; Cell biology; Mitochondrion; Microbiology; Enteropathogenic Escherichia coli; Inner membrane; Bacterial outer membrane; Escherichia coli; Virulence; Biochemistry; Chromosomal translocation","score_opus":0.012281848423149602,"score_gpt":0.2486101201244057,"score_spread":0.2363282717012561,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980612849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975769,0.0005959875,0.00043984296,0.000088078574,0.00022148936,0.00044188657,0.0000055587348,0.000011273762,0.00061899266],"genre_scores_gemma":[0.9992718,0.00036573707,0.000055738874,0.000046142024,0.000063191175,0.000049261344,0.0000057600696,0.000010678597,0.00013170826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992045,0.00028314805,0.00013007595,0.00014340156,0.000091211026,0.0001476482],"domain_scores_gemma":[0.99934274,0.00009061991,0.000056071756,0.00026368658,0.0001837968,0.000063100415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021250904,0.00012302898,0.00013609062,0.000029189729,0.00031074954,0.000032219294,0.000095565905,0.00006580866,0.0000062915146],"category_scores_gemma":[0.00018226214,0.00006505719,0.00003093886,0.00015352208,0.0002630576,0.0000072288685,0.00010704397,0.00015387972,0.0000016646409],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023269032,0.000048383874,0.0015672683,0.00009440295,0.00021100874,0.0000017381357,0.00083949603,0.0000023340376,0.9934753,0.000061442865,0.00041001698,0.00096168637],"study_design_scores_gemma":[0.0034458477,0.005230528,0.08352871,0.00020608491,0.00014198905,0.00011112945,0.0017670556,0.00014591523,0.8670652,0.000005740165,0.037939604,0.00041221787],"about_ca_topic_score_codex":0.0016146227,"about_ca_topic_score_gemma":0.0012818401,"teacher_disagreement_score":0.12641014,"about_ca_system_score_codex":0.000009142672,"about_ca_system_score_gemma":0.000034001525,"threshold_uncertainty_score":0.26529554},"labels":[],"label_agreement":null},{"id":"W1981603866","doi":"10.1128/iai.01584-07","title":"Characterization of Murine Dendritic Cell Line JAWS II and Primary Bone Marrow-Derived Dendritic Cells in<i>Chlamydia muridarum</i>Antigen Presentation and Induction of Protective Immunity","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Antigen presentation; Chlamydia; Antigen; Immunology; Dendritic cell; Antigen-presenting cell; Immune system; CD40; Adoptive cell transfer; T cell; In vitro; Cytotoxic T cell","score_opus":0.012194716413903088,"score_gpt":0.222396981100115,"score_spread":0.2102022646862119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981603866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960275,0.0026505631,0.00016260236,0.000031336862,0.00027233228,0.0006781939,0.000031638163,0.00003273075,0.00011305521],"genre_scores_gemma":[0.99042743,0.00907748,0.000043117972,0.00002859899,0.00001274399,0.000038439164,0.00014247908,0.000019036781,0.00021067624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981238,0.0008140419,0.000568474,0.00022278412,0.00005414015,0.00021676095],"domain_scores_gemma":[0.9990838,0.00014522544,0.00034097157,0.00023450836,0.00017375703,0.00002174493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040484493,0.00022320422,0.00045284594,0.00038633583,0.00045899875,0.00001106687,0.00006347502,0.0002836674,0.0000698572],"category_scores_gemma":[0.00008500612,0.00023034475,0.000054686665,0.00027496845,0.0006017597,0.00043046882,0.00013660372,0.0004950593,0.0000025136633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090161944,0.00050814875,0.012235462,0.00021561046,0.00006968545,0.0000015983056,0.003349382,0.0000018857623,0.97932774,0.0000106763955,0.0000027358346,0.0033754609],"study_design_scores_gemma":[0.0015992289,0.0004169041,0.462522,0.00007049375,0.000020201374,0.00012108,0.00016302025,0.000004131374,0.534832,0.000022951577,0.00011416152,0.000113850125],"about_ca_topic_score_codex":0.002127899,"about_ca_topic_score_gemma":0.00004828245,"teacher_disagreement_score":0.45028654,"about_ca_system_score_codex":0.000039790346,"about_ca_system_score_gemma":0.000082345025,"threshold_uncertainty_score":0.93931866},"labels":[],"label_agreement":null},{"id":"W1984236586","doi":"10.1128/iai.73.10.6383-6389.2005","title":"Doubly Branched Hexasaccharide Epitope on the Cell Wall Polysaccharide of Group A Streptococci Recognized by Human and Rabbit Antisera","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; University of Virginia","keywords":"Antiserum; Polyclonal antibodies; Epitope; Biology; Streptococcus; Trisaccharide; Molecular biology; Microbiology; Polysaccharide; Antigen; Streptococcus pyogenes; Biochemistry; Bacteria; Immunology","score_opus":0.020806833644536903,"score_gpt":0.2771338071148074,"score_spread":0.2563269734702705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984236586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597156,0.0002495294,0.000035920777,0.0005742846,0.0000729041,0.000756424,0.0000143336765,0.00006432263,0.002260721],"genre_scores_gemma":[0.99827623,0.00063615735,0.000040011528,0.000419915,0.000052674997,0.00005177456,0.000026220932,0.000017001654,0.0004800304],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999045,0.00012258568,0.0003122675,0.00022384778,0.00011628833,0.00017997478],"domain_scores_gemma":[0.99920523,0.00014241178,0.00014710256,0.00031555133,0.00008379544,0.00010587843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002454861,0.00019497666,0.00029631425,0.000115236995,0.0003626818,0.00004534424,0.000041296953,0.000108889966,0.00051203516],"category_scores_gemma":[0.000053521406,0.00013684938,0.00009548185,0.0001894242,0.00012297498,0.0001497287,0.000043885524,0.00033458095,0.000020213247],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032128158,0.001971943,0.38007173,0.00008198891,0.00025377257,0.000002672043,0.00048217096,0.0000018701587,0.5716962,0.00028652913,0.0012949926,0.043534808],"study_design_scores_gemma":[0.00741817,0.0017120586,0.6475161,0.00016662324,0.00022365463,0.000053113767,0.00009456886,0.00010231732,0.33469298,0.00023778187,0.0075183273,0.00026430498],"about_ca_topic_score_codex":0.0037538367,"about_ca_topic_score_gemma":0.00016488525,"teacher_disagreement_score":0.26744434,"about_ca_system_score_codex":0.000048595757,"about_ca_system_score_gemma":0.000017311124,"threshold_uncertainty_score":0.5674703},"labels":[],"label_agreement":null},{"id":"W19884336","doi":"10.1128/iai.00533-09","title":"Éléments traces dans le biomoniteur hexagenia limbata provenant de lacs de la région de Rouyn-Noranda, Québec.","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Heavy metals in environment","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Humanities; Forestry; Art; Geography","score_opus":0.013320263178634016,"score_gpt":0.2336575627904263,"score_spread":0.22033729961179227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W19884336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880021,0.000051508196,0.0025890914,0.00005731919,0.000058641435,0.00016049627,0.0000032448004,0.000054156633,0.009023417],"genre_scores_gemma":[0.99821806,0.00035985728,0.00065746193,0.00013374198,0.000013814301,0.00003168063,0.0000027926887,0.000015405158,0.0005671812],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986898,0.0005620277,0.00016672543,0.00017941807,0.00012062326,0.0002814074],"domain_scores_gemma":[0.9994872,0.00005098374,0.00006928039,0.00025108847,0.0000024793042,0.00013896458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091223465,0.00013399849,0.00010876302,0.000032474476,0.00038309605,0.00003538715,0.0001279192,0.000111034955,0.00034075923],"category_scores_gemma":[0.000062523395,0.00012342175,0.000039909155,0.00010543645,0.00031720006,0.0002556806,0.00015088524,0.0002274461,0.00007368244],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046947403,0.0009056104,0.77221864,0.0000134419615,0.000021377879,0.0000070664537,0.006568896,0.00014064336,0.20247303,0.00002784528,0.00016364234,0.017412854],"study_design_scores_gemma":[0.00044266545,0.00017129921,0.90724933,0.000010671436,0.000020255311,0.00006308901,0.00026076776,0.00039077204,0.07854488,0.00030422604,0.012395967,0.00014610535],"about_ca_topic_score_codex":0.17378277,"about_ca_topic_score_gemma":0.008312943,"teacher_disagreement_score":0.16546983,"about_ca_system_score_codex":0.00046121606,"about_ca_system_score_gemma":0.000039960574,"threshold_uncertainty_score":0.8317191},"labels":[],"label_agreement":null},{"id":"W1989302754","doi":"10.1128/iai.71.2.857-863.2003","title":"Protection of Chickens against<i>Escherichia coli</i>Infections by DNA Containing CpG Motifs","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; Biology; CpG site; Escherichia coli; Broiler; Intramuscular injection; Microbiology; Cellulitis; Immunology; Internal medicine; Medicine; Animal science; DNA methylation","score_opus":0.013163654934325052,"score_gpt":0.22011832335311202,"score_spread":0.20695466841878696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989302754","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98993886,0.0002985843,0.00290836,0.000045539076,0.00052343216,0.00024995048,0.000025379553,0.00009393909,0.005915932],"genre_scores_gemma":[0.9984514,0.00027974555,0.000021548625,0.00012479445,0.000011209086,0.000031089516,0.00003920173,0.000013974547,0.0010270372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902326,0.0003362404,0.00024985915,0.00016013866,0.000021790838,0.00020871019],"domain_scores_gemma":[0.9995083,0.00005960082,0.00016029069,0.00015855445,0.00009219176,0.000021038568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026350218,0.00015987096,0.00024234556,0.000093327944,0.0005755117,0.000023107741,0.000039791143,0.0002041488,0.0002410382],"category_scores_gemma":[0.00014213592,0.00015721866,0.000085318556,0.0001752836,0.00027418695,0.00019453654,0.000029978806,0.00042450236,0.000028176219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004463434,0.00027474356,0.0047399825,0.000028239643,0.000112304646,1.6073821e-7,0.00029510973,0.000010695673,0.9898857,0.0015217076,0.00089444866,0.0021923133],"study_design_scores_gemma":[0.0015855556,0.00079723354,0.016536547,0.00007161025,0.000060681257,0.000060460374,0.0006952188,0.000014989875,0.88004804,0.0003855896,0.099405535,0.00033854446],"about_ca_topic_score_codex":0.00201246,"about_ca_topic_score_gemma":0.00010022293,"teacher_disagreement_score":0.10983762,"about_ca_system_score_codex":0.00003072724,"about_ca_system_score_gemma":0.000048157137,"threshold_uncertainty_score":0.64111906},"labels":[],"label_agreement":null},{"id":"W1990899125","doi":"10.1128/iai.00898-10","title":"NALP1 Influences Susceptibility to Human Congenital Toxoplasmosis, Proinflammatory Cytokine Response, and Fate of<i>Toxoplasma gondii</i>-Infected Monocytic Cells","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Toxoplasma gondii; Biology; Toxoplasmosis; Proinflammatory cytokine; Immunology; Cytokine; Virology; Inflammation; Antibody","score_opus":0.013980775032711586,"score_gpt":0.27898709224942786,"score_spread":0.26500631721671625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990899125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99797237,0.00016713419,0.000011372973,0.000095508294,0.00047655043,0.0007044365,0.000087899614,0.00014700617,0.000337708],"genre_scores_gemma":[0.9991057,0.0001240491,0.000078982106,0.000041402323,0.000018960589,0.0000664483,0.000022209902,0.000019606792,0.00052263134],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99782574,0.0007190117,0.00051067397,0.0004110862,0.000083503444,0.00044999455],"domain_scores_gemma":[0.99832135,0.0006158407,0.00018507062,0.00046752414,0.00030459266,0.000105597785],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012256191,0.00031393822,0.0004727772,0.00038024178,0.000725675,0.00005493859,0.00016699292,0.0003367725,0.0001600114],"category_scores_gemma":[0.000953645,0.00028501364,0.00008750774,0.00033533497,0.001085692,0.00025910957,0.00041390274,0.0010115313,0.00008412161],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075103185,0.00014237357,0.13981354,0.00006347821,0.00017160506,0.000002182343,0.0008064962,0.0000024564101,0.85682166,0.0000967766,0.00017565541,0.001152752],"study_design_scores_gemma":[0.0009115586,0.0006096196,0.50672126,0.0000196442,0.00003150489,0.000053050746,0.00011462391,0.0000022797847,0.48553175,0.00005760776,0.005757661,0.0001894456],"about_ca_topic_score_codex":0.0014729839,"about_ca_topic_score_gemma":0.0030371593,"teacher_disagreement_score":0.3712899,"about_ca_system_score_codex":0.000052081636,"about_ca_system_score_gemma":0.00010999745,"threshold_uncertainty_score":0.9999602},"labels":[],"label_agreement":null},{"id":"W1991084507","doi":"10.1128/iai.68.6.3261-3268.2000","title":"Inhibition of Staphylococcal Enterotoxin B-Induced Lymphocyte Proliferation and Tumor Necrosis Factor Alpha Secretion by MAb5, an Anti-Toxic Shock Syndrome Toxin 1 Monoclonal Antibody","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre; University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Superantigen; Enterotoxin; Toxic shock syndrome; Biology; Epitope; Monoclonal antibody; Peripheral blood mononuclear cell; Tumor necrosis factor alpha; Antibody; Toxin; Exotoxin; Microbiology; Secretion; Molecular biology; T cell; Immunology; Staphylococcus aureus; In vitro; Immune system; Biochemistry; Escherichia coli; Gene","score_opus":0.014241741950997991,"score_gpt":0.27572563512618725,"score_spread":0.2614838931751893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991084507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981242,0.000091310576,0.0003102618,0.000054788365,0.00008346741,0.00095387537,0.00012666757,0.00009505244,0.00016039307],"genre_scores_gemma":[0.9987864,0.00041131815,0.00009537944,0.00015027601,0.000037691672,0.00003576725,0.0003449244,0.000030421597,0.0001078242],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99843603,0.00021265242,0.00049840054,0.00035025645,0.0002354379,0.00026723198],"domain_scores_gemma":[0.99918246,0.000034767643,0.00018433254,0.00027044234,0.00014574172,0.00018225519],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024042964,0.00027458055,0.00044219877,0.00019211683,0.0002664174,0.000080803766,0.00004159583,0.00018967499,0.00036216565],"category_scores_gemma":[0.000047108555,0.00027277254,0.00008793318,0.0002703221,0.00017770055,0.0005550168,0.00003182311,0.00029550085,0.000008898637],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006035752,0.0004773919,0.06131481,0.00016010684,0.00004288203,0.000008196444,0.00036348327,0.0000033682368,0.93116593,0.000009365124,0.000031858926,0.0058190054],"study_design_scores_gemma":[0.0027007954,0.0014899943,0.58831656,0.00025982404,0.000057092333,0.0002554681,0.00006111143,0.00083545607,0.40537745,0.000031714117,0.0003522818,0.00026223317],"about_ca_topic_score_codex":0.0011154817,"about_ca_topic_score_gemma":0.00007021998,"teacher_disagreement_score":0.52700174,"about_ca_system_score_codex":0.00019954544,"about_ca_system_score_gemma":0.00012901693,"threshold_uncertainty_score":0.99997246},"labels":[],"label_agreement":null},{"id":"W1991813514","doi":"10.1128/iai.00339-13","title":"Divergent Immune Responses to Mycobacterium avium subsp. paratuberculosis Infection Correlate with Kinome Responses at the Site of Intestinal Infection","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Ministry of Agriculture - Saskatchewan","keywords":"Paratuberculosis; Biology; Kinome; Immune system; Microbiology; Mycobacterium; Virology; Immunology; Gene; Genetics; Bacteria","score_opus":0.021249374599173084,"score_gpt":0.28065511498561474,"score_spread":0.25940574038644165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991813514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967403,0.00018016089,0.00011818328,0.00089842593,0.0003546736,0.0010266202,0.000022829185,0.00010676706,0.00055207027],"genre_scores_gemma":[0.9963455,0.001469375,0.000035975212,0.00022760304,0.00007921098,0.00025517505,0.00006280955,0.000026044976,0.0014982932],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99790776,0.0006647141,0.00043974436,0.00028919766,0.00032939285,0.00036919495],"domain_scores_gemma":[0.997813,0.0005617871,0.00019828047,0.0005357246,0.0006128783,0.0002783169],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00072657556,0.00027151336,0.00037264518,0.0004077407,0.0005334246,0.00010197718,0.000050097355,0.00013786422,0.0012144132],"category_scores_gemma":[0.0011397875,0.0001834677,0.00013597318,0.00073519227,0.0002554656,0.000381989,0.00024428294,0.0005079843,0.00030399347],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030661824,0.00028064012,0.85388345,0.00011369131,0.000107833235,0.000004128232,0.0003746511,0.00001072441,0.13951899,0.000009592769,0.0007874205,0.0018426884],"study_design_scores_gemma":[0.00097407325,0.0027066397,0.96052665,0.00022828353,0.00014295196,0.00030799262,0.000030684067,0.000046817015,0.030044066,0.00001221928,0.0047849608,0.00019465339],"about_ca_topic_score_codex":0.040830676,"about_ca_topic_score_gemma":0.0011785888,"teacher_disagreement_score":0.10947492,"about_ca_system_score_codex":0.00022240257,"about_ca_system_score_gemma":0.00011145783,"threshold_uncertainty_score":0.99969864},"labels":[],"label_agreement":null},{"id":"W1991857605","doi":"10.1128/iai.72.8.4603-4611.2004","title":"Inbred Strains Derived from Feral Mice Reveal New Pathogenic Mechanisms of Experimental Leishmaniasis Due to<i>Leishmania major</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie","keywords":"Biology; Leishmaniasis; Immunology; Immune system; Leishmania major; Disease; Inbred strain; Leishmania; Canine leishmaniasis; Phenotype; Cutaneous leishmaniasis; Dominance (genetics); Virology; Parasite hosting; Visceral leishmaniasis; Genetics; Gene; Medicine; Pathology","score_opus":0.028536166167099333,"score_gpt":0.29332265049714124,"score_spread":0.2647864843300419,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991857605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944316,0.00037864325,0.0022418606,0.0008761358,0.00021880699,0.0006636102,0.000044245662,0.00010980105,0.0010352985],"genre_scores_gemma":[0.99580204,0.00012454031,0.0030876375,0.00054656825,0.000126177,0.00003576392,0.000047839985,0.000035081204,0.00019435534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998327,0.000153517,0.00043075962,0.00035234922,0.00037542236,0.0003609366],"domain_scores_gemma":[0.9988963,0.000056933066,0.00012300703,0.00040323706,0.00017923155,0.00034127862],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002639374,0.00027109633,0.00055281084,0.00021276514,0.00028485106,0.00005037418,0.00012270194,0.00014508367,0.00021341805],"category_scores_gemma":[0.00022275173,0.00026332017,0.00015751587,0.00034305666,0.00012562942,0.00022963862,0.00024584125,0.00040574162,0.00004391802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031948384,0.00047735113,0.0026666422,0.000035069475,0.00022660937,0.000032817567,0.002356509,0.0000047239523,0.99050754,0.0003073651,0.00031954597,0.0027463497],"study_design_scores_gemma":[0.0035489725,0.0011204936,0.45998,0.00012419638,0.00007516661,0.000112524984,0.0010016816,0.000004293967,0.53266335,0.0009931335,0.00017428985,0.00020188998],"about_ca_topic_score_codex":0.019947356,"about_ca_topic_score_gemma":0.001007328,"teacher_disagreement_score":0.45784417,"about_ca_system_score_codex":0.00025733202,"about_ca_system_score_gemma":0.00019603007,"threshold_uncertainty_score":0.9999819},"labels":[],"label_agreement":null},{"id":"W1993507524","doi":"10.1128/iai.02495-14","title":"Sterilizing Immunity Elicited by Neisseria meningitidis Carriage Shows Broader Protection than Predicted by Serum Antibody Cross-Reactivity in <i>CEACAM1</i> -Humanized Mice","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Neisseria meningitidis; Biology; Microbiology; Antibody; Immunity; Immune system; Virology; Antiserum; Strain (injury); Neisseriaceae; Humoral immunity; Immunology; Bacteria; Antibiotics","score_opus":0.012462469060492832,"score_gpt":0.2694014648051376,"score_spread":0.2569389957446448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993507524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99594015,0.00024415017,0.0008653349,0.000068411966,0.0012020114,0.0006373533,0.00017198035,0.0003157449,0.00055487896],"genre_scores_gemma":[0.9981524,0.00020266205,0.0000053572026,0.000060834747,0.000057888315,0.00008249956,0.00083974755,0.000038792317,0.0005598458],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99719,0.0013290251,0.00054474926,0.00042410908,0.000032962933,0.00047914783],"domain_scores_gemma":[0.9989339,0.0001379206,0.0002868866,0.0004279367,0.00015950676,0.000053845193],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00075061043,0.0003899654,0.00050117966,0.00023606776,0.0010109661,0.00018566736,0.00014490072,0.00055639626,0.00035984183],"category_scores_gemma":[0.00024094342,0.00038781733,0.00010751974,0.0004374241,0.00019279585,0.00077824766,0.00015913938,0.0010414593,0.000023972443],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036807495,0.00038428998,0.08457636,0.00004165397,0.00008783241,1.0907214e-7,0.00034493062,0.000002165248,0.9104801,0.00001419375,0.00029249294,0.003407824],"study_design_scores_gemma":[0.0040040542,0.00052945263,0.58515453,0.00008111709,0.00005071808,0.0000749753,0.00014065318,0.00013196266,0.37133425,0.000038905502,0.03797901,0.0004803982],"about_ca_topic_score_codex":0.031219317,"about_ca_topic_score_gemma":0.0014124344,"teacher_disagreement_score":0.5391458,"about_ca_system_score_codex":0.000107904954,"about_ca_system_score_gemma":0.00002917661,"threshold_uncertainty_score":0.99985737},"labels":[],"label_agreement":null},{"id":"W1993768789","doi":"10.1128/iai.73.10.6407-6418.2005","title":"Comparative Genomic Analysis of<i>Chlamydia trachomatis</i>Oculotropic and Genitotropic Strains","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Chlamydia trachomatis; Lymphogranuloma venereum; Virology; Genome; Sexually transmitted disease; Genetics; Single-nucleotide polymorphism; Gene; Genotype","score_opus":0.030555856707811475,"score_gpt":0.3146210406300704,"score_spread":0.28406518392225893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993768789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957268,0.0018101027,0.0004217913,0.000054485736,0.00011273085,0.00020658333,0.000026803425,0.000047296537,0.0015933615],"genre_scores_gemma":[0.99884695,0.00058539124,0.00007940318,0.000017203804,0.000025373613,0.000016508018,0.000046717603,0.0000064647465,0.00037599972],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886316,0.00040790244,0.00028001022,0.00022770146,0.00003384236,0.00018740108],"domain_scores_gemma":[0.9993346,0.00012441387,0.00011048837,0.0002749295,0.00012826441,0.000027331875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024285317,0.00013829306,0.000383757,0.0005303169,0.0003104428,0.000024675965,0.000060941045,0.00013076907,0.0005082331],"category_scores_gemma":[0.00006276991,0.00012881316,0.000093026945,0.00052021584,0.0004275708,0.00020394362,0.00006143538,0.0004127572,0.000056337736],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004034771,0.0003381394,0.39866096,0.000019407616,0.0026056995,2.8036362e-7,0.0016454022,0.00030825913,0.5731334,0.00045201692,0.000069294656,0.022726825],"study_design_scores_gemma":[0.0005143192,0.00011469615,0.97552633,0.0000042073375,0.00038280323,0.000032110664,0.00013455166,0.00010652364,0.020186396,0.00002773437,0.00285849,0.00011180604],"about_ca_topic_score_codex":0.0014329862,"about_ca_topic_score_gemma":0.00064368185,"teacher_disagreement_score":0.57686543,"about_ca_system_score_codex":0.000053705222,"about_ca_system_score_gemma":0.00003151611,"threshold_uncertainty_score":0.55647963},"labels":[],"label_agreement":null},{"id":"W1995700343","doi":"10.1128/iai.70.9.4870-4879.2002","title":"Incorporation of<i>N</i>-Acetylneuraminic Acid into<i>Haemophilus somnus</i>Lipooligosaccharide (LOS): Enhancement of Resistance to Serum and Reduction of LOS Antibody Binding","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Neuraminidase; Biology; Microbiology; Sialic acid; Phase variation; N-Acetylneuraminic acid; Haemophilus; Epitope; Neisseria gonorrhoeae; Sialidase; Antibody; Virology; Bacteria; Biochemistry; Enzyme; Virulence; Immunology","score_opus":0.022061893358575266,"score_gpt":0.2915457428662713,"score_spread":0.269483849507696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995700343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678296,0.0014447242,0.00054772396,0.000075895536,0.0002819542,0.0003244429,0.000069186906,0.00001964737,0.00045348913],"genre_scores_gemma":[0.99777246,0.0017466501,0.00006320128,0.000013790504,0.000015026081,0.000011992642,0.000058303718,0.00000867869,0.00030988146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988818,0.00024901758,0.0004524774,0.00019847672,0.000052548807,0.00016566811],"domain_scores_gemma":[0.999182,0.000046651152,0.00027334326,0.00024925524,0.0002106715,0.00003810794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003588997,0.00013453166,0.00029335663,0.00033561458,0.00024053628,0.000012036611,0.00006127119,0.00013951374,0.00022857873],"category_scores_gemma":[0.000089383204,0.00013527086,0.000060842638,0.00042559727,0.0002890709,0.00019040721,0.000106656546,0.00021125913,0.000012771506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001556277,0.00030614427,0.0039269463,0.00028681685,0.000076816104,2.2432064e-7,0.0004404026,0.0000040607906,0.9898917,0.00024586203,0.00026602583,0.0043993737],"study_design_scores_gemma":[0.00068359746,0.0004121277,0.009743261,0.00016872588,0.00004041644,0.000026253862,0.00013980584,0.000008923502,0.98750615,0.00012789381,0.001022463,0.00012037218],"about_ca_topic_score_codex":0.00052938226,"about_ca_topic_score_gemma":0.00009794606,"teacher_disagreement_score":0.005816315,"about_ca_system_score_codex":0.000036359343,"about_ca_system_score_gemma":0.00002914969,"threshold_uncertainty_score":0.5516186},"labels":[],"label_agreement":null},{"id":"W1997880712","doi":"10.1128/iai.73.6.3502-3511.2005","title":"<i>Staphylococcus aureus</i>Strains That Express Serotype 5 or Serotype 8 Capsular Polysaccharides Differ in Virulence","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Virulence; Microbiology; Serotype; Bacterial capsule; Staphylococcus aureus; Strain (injury); In vivo; In vitro; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.03046171034658045,"score_gpt":0.289696062047755,"score_spread":0.25923435170117454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997880712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967592,0.00043256805,0.00038137328,0.00047541992,0.00018125659,0.0005558442,0.000017767003,0.00018634264,0.0010102404],"genre_scores_gemma":[0.9965282,0.0011437436,0.00031631032,0.000980163,0.00013449008,0.000037919246,0.000009808824,0.00004142516,0.00080795534],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99859196,0.00012851229,0.00034304473,0.0003224381,0.00021660313,0.00039742954],"domain_scores_gemma":[0.9990716,0.00007482535,0.00011711586,0.0004680462,0.00010700433,0.00016141658],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002936031,0.00027902552,0.00039292529,0.00022959533,0.00021172132,0.00006099838,0.00011557038,0.00021472835,0.0004118796],"category_scores_gemma":[0.00018316109,0.00023208802,0.00009344482,0.00038655152,0.0002141391,0.00034451418,0.00009443009,0.0006354467,0.00006299963],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078038964,0.00052313134,0.33621612,0.00018007495,0.00006317357,0.00004292956,0.0010046186,0.000031495736,0.6491597,0.00008608506,0.0010918727,0.010820384],"study_design_scores_gemma":[0.0019416136,0.00028279252,0.8358037,0.00034305474,0.000052530813,0.000046252884,0.00022916296,0.00014910824,0.13735187,0.000056639088,0.023380669,0.00036260352],"about_ca_topic_score_codex":0.001718485,"about_ca_topic_score_gemma":0.0017632081,"teacher_disagreement_score":0.51180786,"about_ca_system_score_codex":0.00015188917,"about_ca_system_score_gemma":0.000109338536,"threshold_uncertainty_score":0.94642746},"labels":[],"label_agreement":null},{"id":"W1998025863","doi":"10.1128/iai.73.11.7113-7125.2005","title":"Cholesterol-Enriched Membrane Microdomains Are Required for Inducing Host Cell Cytoskeleton Rearrangements in Response to Attaching-Effacing <i>Escherichia coli</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Cytoskeleton; Biology; Lipid raft; Enteropathogenic Escherichia coli; Escherichia coli; Cell biology; Microbiology; Sphingolipid; Signal transduction; Cholesterol; Cell membrane; Cell; Biochemistry","score_opus":0.019408802349983763,"score_gpt":0.2989146874638009,"score_spread":0.27950588511381713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998025863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973431,0.00018068876,0.0007906647,0.00049385126,0.000089625064,0.0006927428,0.000016056696,0.000025704307,0.00036754852],"genre_scores_gemma":[0.9974881,0.00030256662,0.0007121347,0.0007707101,0.00010867306,0.00014548293,0.000023615923,0.000028571956,0.000420159],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985104,0.000410975,0.0002676814,0.00033810543,0.000114911905,0.000357934],"domain_scores_gemma":[0.99927,0.00008998778,0.00010227489,0.00031465935,0.000112371985,0.00011066956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011592548,0.00019752065,0.00021712572,0.00013860498,0.00032475585,0.000063712796,0.00011728353,0.00014526208,0.0000040005407],"category_scores_gemma":[0.0007722374,0.00020905466,0.00006456232,0.000248194,0.000054790016,0.000023565957,0.0002256089,0.00025656214,0.000005202284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009093028,0.00016192619,0.020787785,0.000064940585,0.000030350473,4.7216298e-7,0.00049763755,0.000082294384,0.97650874,8.9573126e-7,0.0002790975,0.0006765522],"study_design_scores_gemma":[0.0030109282,0.0008615529,0.49135566,0.00006934162,0.000016066364,0.000003330124,0.00037106877,0.000094881645,0.4543794,0.0000022940264,0.049496528,0.00033895267],"about_ca_topic_score_codex":0.0004383487,"about_ca_topic_score_gemma":0.0013355416,"teacher_disagreement_score":0.52212936,"about_ca_system_score_codex":0.00009038146,"about_ca_system_score_gemma":0.000052434436,"threshold_uncertainty_score":0.85250014},"labels":[],"label_agreement":null},{"id":"W2001812775","doi":"10.1128/iai.74.1.273-281.2006","title":"Interaction with CagF Is Required for Translocation of CagA into the Host via the<i>Helicobacter pylori</i>Type IV Secretion System","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"CagA; Secretion; Biology; Pathogenicity island; Helicobacter pylori; Virulence; Chromosomal translocation; Transport protein; Immunoprecipitation; Chaperone (clinical); Cell biology; Microbiology; Type three secretion system; Secretory protein; Genetics; Gene; Biochemistry","score_opus":0.018397397106051462,"score_gpt":0.26835476077471654,"score_spread":0.24995736366866508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001812775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870355,0.00012503374,0.006281924,0.005290179,0.00034777305,0.00070081576,0.00000547795,0.00006288805,0.00015037965],"genre_scores_gemma":[0.9986481,0.00028354532,0.000062219464,0.00062557065,0.00015464934,0.000078894846,0.000045629084,0.000016088394,0.00008529325],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911845,0.00015108514,0.00031486448,0.00015028869,0.00011534242,0.000149949],"domain_scores_gemma":[0.99895936,0.00008946623,0.0001826954,0.0002850469,0.00044499236,0.000038428785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039421412,0.00014880871,0.00022083923,0.00008330958,0.00035844493,0.000018374674,0.00004936623,0.000101748585,0.000011781916],"category_scores_gemma":[0.000046871388,0.000086668326,0.000059032944,0.0002164302,0.00018419803,0.00021508698,0.000019660882,0.00030198507,0.000007671861],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009319701,0.0006667142,0.1983398,0.0008380777,0.002582186,0.0000017232572,0.055989992,0.00006336217,0.61263764,0.00022388244,0.000773616,0.11856329],"study_design_scores_gemma":[0.0066470928,0.005292128,0.880839,0.00074261276,0.0011865118,0.0005213909,0.004573125,0.0073735756,0.0415579,0.000019494793,0.050921835,0.00032533216],"about_ca_topic_score_codex":0.0014718333,"about_ca_topic_score_gemma":0.000978665,"teacher_disagreement_score":0.6824992,"about_ca_system_score_codex":0.00013873627,"about_ca_system_score_gemma":0.00003097138,"threshold_uncertainty_score":0.35342318},"labels":[],"label_agreement":null},{"id":"W2003942367","doi":"10.1128/iai.01594-14","title":"Functional Antibodies against VAR2CSA in Nonpregnant Populations from Colombia Exposed to Plasmodium falciparum and Plasmodium vivax","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Toronto; University Health Network; Centre for Global Health Research; Toronto General Hospital; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Plasmodium vivax; Biology; Plasmodium falciparum; Virology; Antibody; Malaria; Apicomplexa; Plasmodium (life cycle); Immunology; Parasite hosting","score_opus":0.036253276665054006,"score_gpt":0.28317405672078194,"score_spread":0.24692078005572793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003942367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936575,0.00007066108,0.0017984745,0.0015281449,0.00025923955,0.0004085129,0.000025305691,0.000052363313,0.002199767],"genre_scores_gemma":[0.9987366,0.00009361495,0.0001581201,0.00045551432,0.0000815783,0.000047775513,0.000116210176,0.00001085183,0.0002996929],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989612,0.0001722174,0.00023070558,0.00021733051,0.00017579675,0.0002427162],"domain_scores_gemma":[0.99930155,0.00015021804,0.000043872027,0.00020296035,0.000093322844,0.00020806678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029575548,0.00013952317,0.00026274446,0.00023243653,0.00025916143,0.00006327538,0.000034833512,0.00010616229,0.00013009245],"category_scores_gemma":[0.0003708669,0.00012680766,0.00004042943,0.0001701802,0.00007378651,0.00013660373,0.000080105354,0.00032298287,0.000029089379],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020063703,0.000707022,0.8396788,0.0000889534,0.00013299896,0.000010557205,0.0008098103,0.00017251803,0.12709606,0.0027539122,0.0018614734,0.024681488],"study_design_scores_gemma":[0.0030955155,0.00038321968,0.98699087,0.00009508684,0.000023999448,0.0000098531145,0.00008831727,0.0038305004,0.0020746563,0.00042571977,0.0028513463,0.00013094593],"about_ca_topic_score_codex":0.0032458457,"about_ca_topic_score_gemma":0.0021402712,"teacher_disagreement_score":0.147312,"about_ca_system_score_codex":0.000054096054,"about_ca_system_score_gemma":0.00005049203,"threshold_uncertainty_score":0.51710665},"labels":[],"label_agreement":null},{"id":"W2005935470","doi":"10.1128/iai.68.8.4441-4451.2000","title":"Genetic Characterization of a <i>Streptococcus mutans</i> LraI Family Operon and Role in Virulence","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Philips (Canada)","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health","keywords":"Operon; Virulence; Biology; Microbiology; Gene; Streptococcus mutans; Genetics; Streptococcus pyogenes; Mutant; Bacteria; Staphylococcus aureus","score_opus":0.009681989205419687,"score_gpt":0.2489073212192537,"score_spread":0.23922533201383403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005935470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968383,0.00011263556,0.00002842381,0.000020031812,0.000030763596,0.00035318307,0.000007517401,0.000024953039,0.0025842094],"genre_scores_gemma":[0.9983621,0.0013219746,0.000024811554,0.000071879025,0.000014109631,0.000042476262,0.000017069684,0.0000065745467,0.0001389969],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995039,0.000048410948,0.00018301672,0.00012264078,0.00005178266,0.00009023415],"domain_scores_gemma":[0.9997289,0.0000146775465,0.00003834418,0.0001279672,0.000041146763,0.00004891663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000053589745,0.00008958247,0.00015481183,0.00009140534,0.00006790663,0.000012843607,0.000012729258,0.00006324748,0.00020784963],"category_scores_gemma":[0.000013009167,0.00008044934,0.000022335906,0.00022139911,0.000068520625,0.000106011394,0.000012907598,0.00010893151,0.000008319544],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005081529,0.00025001,0.7034494,0.000023504994,0.000016661774,0.0000018109762,0.0001547304,0.0000028243169,0.17478538,0.000006495122,0.0000010553491,0.12125727],"study_design_scores_gemma":[0.0011259092,0.00034841726,0.9884313,0.00007837379,0.00002814162,0.000034287583,0.000026754225,0.0002175759,0.008547507,0.000028035349,0.0010715503,0.000062196355],"about_ca_topic_score_codex":0.0022647367,"about_ca_topic_score_gemma":0.000052462503,"teacher_disagreement_score":0.2849818,"about_ca_system_score_codex":0.000024340696,"about_ca_system_score_gemma":0.000019363903,"threshold_uncertainty_score":0.34236196},"labels":[],"label_agreement":null},{"id":"W2006450435","doi":"10.1128/iai.69.1.579-583.2001","title":"Mouse Toxicity and Cytokine Release by Verotoxin 1 B Subunit Mutants","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxin Mechanisms and Immunotoxins","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"Medical Research Council; Medical Research Council Canada; University of Toronto","keywords":"Biology; Cytotoxicity; Cytokine; Molecular biology; Mutant; Binding site; In vitro; Receptor; In vivo; Toxicity; Biochemistry; Immunology; Chemistry","score_opus":0.010734496407194689,"score_gpt":0.22811992203753773,"score_spread":0.21738542563034305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006450435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652034,0.0011435789,0.00044638762,0.000103674356,0.00030354943,0.00025253685,0.00006426617,0.00014707545,0.0010186158],"genre_scores_gemma":[0.9926199,0.0030559236,0.00002001501,0.00032748643,0.000016115295,0.000021440763,0.00008531223,0.000018916466,0.0038349358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989078,0.00026425856,0.0002458926,0.00024220643,0.000033235174,0.00030659622],"domain_scores_gemma":[0.99944675,0.00006656824,0.00009271868,0.00028954665,0.00005308188,0.000051353836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028237174,0.00021351989,0.00024463344,0.00010580456,0.0005745725,0.000046425444,0.00008524647,0.00027164337,0.0008439619],"category_scores_gemma":[0.00010864621,0.00020237861,0.000047746296,0.00016117372,0.00020847803,0.00024290472,0.00012285163,0.0004962203,0.00013433586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017172271,0.00030228627,0.0070567904,0.000010350082,0.00006189376,0.0000025792338,0.00015865861,3.8782463e-7,0.9782873,0.00020617025,0.0011629596,0.012578951],"study_design_scores_gemma":[0.0031527514,0.00067951984,0.034462545,0.000027960252,0.000041264677,0.000381731,0.00018113288,0.000024482373,0.772709,0.0002456183,0.18768965,0.00040435191],"about_ca_topic_score_codex":0.0018110153,"about_ca_topic_score_gemma":0.00011103447,"teacher_disagreement_score":0.20557825,"about_ca_system_score_codex":0.000035290614,"about_ca_system_score_gemma":0.000017939792,"threshold_uncertainty_score":0.9240791},"labels":[],"label_agreement":null},{"id":"W2006492317","doi":"10.1128/iai.00707-10","title":"Invasion of Bovine Peripheral Blood Mononuclear Cells and Erythrocytes by<i>Mycoplasma bovis</i>","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Beef Cattle Research Council; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Peripheral blood mononuclear cell; Immune system; Population; Immunology; Cytotoxic T cell; Microbiology; In vitro; Medicine","score_opus":0.007298440331634331,"score_gpt":0.23097001196107356,"score_spread":0.22367157162943924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006492317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972442,0.00075746136,0.0000343263,0.000044858854,0.00030269174,0.00014834762,0.000056239816,0.000049741724,0.0013621813],"genre_scores_gemma":[0.99773467,0.0014658958,0.000026584488,0.000050141778,0.000017258737,0.000006127442,0.000042341722,0.000011540041,0.00064546673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926615,0.00014914757,0.00019643045,0.00017248838,0.000024560599,0.00019124725],"domain_scores_gemma":[0.9995088,0.00008179502,0.000071356844,0.00020014029,0.000089735964,0.00004819794],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002268097,0.00013055606,0.00018982489,0.00010152795,0.00038231845,0.000035432688,0.00005264837,0.00020927266,0.0011457797],"category_scores_gemma":[0.000060731287,0.00011915699,0.000052708856,0.0001184491,0.00038083448,0.0001497219,0.00012637889,0.0005013663,0.000037053756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104262064,0.00033495316,0.010529723,0.000042570082,0.00006395687,4.2819056e-7,0.00013613958,4.257659e-7,0.983119,0.00013119727,0.0024691075,0.00306824],"study_design_scores_gemma":[0.0017798925,0.0006031357,0.008012758,0.000021516606,0.000059612892,0.00022314489,0.000099118,0.0000137943025,0.9386211,0.000087310975,0.050287157,0.0001914484],"about_ca_topic_score_codex":0.00399336,"about_ca_topic_score_gemma":0.00032479092,"teacher_disagreement_score":0.04781805,"about_ca_system_score_codex":0.000007531178,"about_ca_system_score_gemma":0.000034156215,"threshold_uncertainty_score":0.9997673},"labels":[],"label_agreement":null},{"id":"W2010479287","doi":"10.1128/iai.73.10.6523-6529.2005","title":"Recombinant Shiga Toxin B-Subunit-Keyhole Limpet Hemocyanin Conjugate Vaccine Protects Mice from Shigatoxemia","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Keyhole limpet hemocyanin; Immunogenicity; Biology; Shiga toxin; Microbiology; Virology; Recombinant DNA; Antibody; Toxin; Shiga-like toxin; Escherichia coli; Immunology; Biochemistry","score_opus":0.010898094813415353,"score_gpt":0.2612043720030687,"score_spread":0.2503062771896533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010479287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99621075,0.00096722075,0.00013270693,0.0006499074,0.00014005168,0.00032075064,0.000013735,0.000044439286,0.0015204471],"genre_scores_gemma":[0.9961604,0.001956396,0.00030649747,0.00045803597,0.0001951277,0.00006668891,0.00008357721,0.000020995525,0.0007522956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988936,0.00023570616,0.00020787823,0.00027832488,0.00010792925,0.00027652766],"domain_scores_gemma":[0.9993189,0.000035819987,0.000080761165,0.00032572832,0.00012405233,0.00011475238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033036887,0.00018916583,0.00018567873,0.00004837246,0.00032151284,0.000058504702,0.00012095449,0.00015861448,0.0000693292],"category_scores_gemma":[0.00029532396,0.0001768724,0.000060232083,0.00013876049,0.00007155315,0.000017900253,0.00029057168,0.00034790975,0.00003291303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020217913,0.00020540129,0.020501466,0.000025285533,0.000113447895,0.0000017680619,0.00015889594,0.000009814556,0.966645,0.000032805485,0.002261754,0.009842184],"study_design_scores_gemma":[0.0020218843,0.0007702387,0.13463488,0.000049565828,0.00002467343,0.000028338585,0.00013814714,0.0002283507,0.666178,0.00016946933,0.19536056,0.00039593552],"about_ca_topic_score_codex":0.0015898644,"about_ca_topic_score_gemma":0.0013052255,"teacher_disagreement_score":0.30046704,"about_ca_system_score_codex":0.00003569629,"about_ca_system_score_gemma":0.00005893236,"threshold_uncertainty_score":0.7212647},"labels":[],"label_agreement":null},{"id":"W2012132820","doi":"10.1128/iai.01527-07","title":"Immunization with a Toll-Like Receptor 7 and/or 8 Agonist Vaccine Adjuvant Increases Protective Immunity against<i>Leishmania major</i>in BALB/c Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Adjuvant; Imiquimod; Vaccination; Immunology; Leishmania major; TLR7; Immune system; Antigen; Immunization; Immunity; Toll-like receptor; Biology; Leishmania; Medicine; Virology; Innate immune system","score_opus":0.02050207259815897,"score_gpt":0.27045404980394494,"score_spread":0.24995197720578596,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012132820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99536705,0.0010558624,0.00012521574,0.00045359423,0.00006876631,0.0013946973,0.000011707815,0.0001428763,0.0013802187],"genre_scores_gemma":[0.9890794,0.009495056,0.0002718513,0.00026914553,0.00005570142,0.00019312064,0.0000770717,0.000040374707,0.0005182701],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99795365,0.00059008703,0.00041024858,0.00034883947,0.00030979989,0.00038735755],"domain_scores_gemma":[0.9985302,0.00024017072,0.00016379627,0.00044995843,0.0004366316,0.00017920866],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006073255,0.00032779973,0.0005893732,0.00037638558,0.0009976857,0.00005797837,0.000093692164,0.00014392482,0.00010369748],"category_scores_gemma":[0.00081894326,0.00024789484,0.000055823388,0.0007735697,0.0003257087,0.00045599425,0.00023873465,0.0008743879,0.00001609104],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009308971,0.0025651178,0.9226386,0.00062665803,0.00057180924,0.0001841657,0.004349209,0.000012614959,0.04259015,0.00004867876,0.0011781091,0.015925894],"study_design_scores_gemma":[0.00558688,0.002011435,0.9809219,0.00040695717,0.00006397636,0.0007076516,0.0010779793,0.00015485416,0.005364762,0.000017637818,0.0033710308,0.0003149323],"about_ca_topic_score_codex":0.019886268,"about_ca_topic_score_gemma":0.0039531253,"teacher_disagreement_score":0.05828328,"about_ca_system_score_codex":0.00025571237,"about_ca_system_score_gemma":0.00021962445,"threshold_uncertainty_score":0.9999973},"labels":[],"label_agreement":null},{"id":"W2012427838","doi":"10.1128/iai.70.8.4226-4238.2002","title":"Pathogenesis of Pneumococcal Pneumonia in Cyclophosphamide-Induced Leukopenia in Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Leukopenia; Pneumonia; Biology; Immunology; Streptococcus pneumoniae; Lung; Pathogenesis; Cyclophosphamide; Pathology; Microbiology; Medicine; Antibiotics; Internal medicine; Chemotherapy","score_opus":0.02983535884702861,"score_gpt":0.27166833898412535,"score_spread":0.24183298013709673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012427838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575603,0.00015563707,0.000005162462,0.0002404455,0.00016938768,0.000260164,0.000001940517,0.00003545951,0.003375748],"genre_scores_gemma":[0.9989847,0.00069509353,0.000006575839,0.00014047897,0.00002188505,0.000026339041,0.0000023947805,0.000012334395,0.00011018254],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990351,0.00014824606,0.00037414188,0.0001628372,0.00009690474,0.00018276174],"domain_scores_gemma":[0.99952936,0.00006520991,0.000080113976,0.00019082575,0.000055819102,0.00007869902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023543893,0.00013267122,0.0003018589,0.00035700924,0.000077421,0.000009469562,0.00003734836,0.00014722315,0.00011822464],"category_scores_gemma":[0.0001289731,0.0001250909,0.00006677359,0.00059377844,0.00006296664,0.00012284599,0.000037264937,0.0003756166,0.00002549373],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014873688,0.00030850564,0.45387268,0.000035767425,0.0000077164295,0.000011971781,0.00022594181,0.00000775902,0.5404126,0.000012730754,0.0000029200933,0.0050865035],"study_design_scores_gemma":[0.0011992641,0.0002723865,0.98388,0.00009714073,0.00001844178,0.00009770828,0.00006347628,0.00024149877,0.0126068285,0.000022890983,0.0013865035,0.00011385829],"about_ca_topic_score_codex":0.0019376939,"about_ca_topic_score_gemma":0.0008404804,"teacher_disagreement_score":0.5300073,"about_ca_system_score_codex":0.00008631511,"about_ca_system_score_gemma":0.000031424384,"threshold_uncertainty_score":0.51010585},"labels":[],"label_agreement":null},{"id":"W2012533003","doi":"10.1128/iai.00018-09","title":"Is Peer Review Censorship?","year":2009,"lang":"en","type":"editorial","venue":"Infection and Immunity","topic":"scientometrics and bibliometrics research","field":"Decision Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Censorship; Biology; Virology; Political science; Law","score_opus":0.5778104572087954,"score_gpt":0.6152475294336978,"score_spread":0.037437072224902335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012533003","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001493002,0.028235277,0.00013041635,0.004689601,0.9272352,0.00046548597,0.00023822734,0.00007416896,0.03743866],"genre_scores_gemma":[0.002850473,0.38093248,0.00009232038,0.0023292275,0.4616806,0.000026363992,0.00029759292,0.000043904965,0.15174705],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9816131,0.00082862354,0.0008217234,0.0006692092,0.015630309,0.00043704445],"domain_scores_gemma":[0.9736232,0.0070827114,0.00052960287,0.0013484128,0.017015202,0.00040083978],"candidate_categories":["metaresearch","bibliometrics","scholarly_communication","insufficient_payload"],"consensus_categories":["metaresearch","bibliometrics","insufficient_payload"],"category_scores_codex":[0.044914093,0.00026698672,0.0006463098,0.022777697,0.0004938613,0.0025604796,0.0012066695,0.0007161511,0.00221997],"category_scores_gemma":[0.25331953,0.00018986092,0.00027674227,0.07098044,0.00014142117,0.0004699534,0.0005295242,0.00196047,0.00092252984],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000053918034,0.000057892474,0.00063386845,0.00006270674,0.000010197255,0.0000015112242,0.000020063007,6.395668e-8,0.000003088155,0.000009770741,0.89824516,0.10095028],"study_design_scores_gemma":[0.0001861901,0.00016024314,0.01420888,0.00019848047,0.000019270703,0.0000035236,0.0000068941526,0.000016085633,0.000017129638,0.0013990056,0.9835652,0.00021908444],"about_ca_topic_score_codex":0.0010225547,"about_ca_topic_score_gemma":0.00003239796,"teacher_disagreement_score":0.46555457,"about_ca_system_score_codex":0.00013367378,"about_ca_system_score_gemma":0.00031466136,"threshold_uncertainty_score":0.99985534},"labels":[],"label_agreement":null},{"id":"W2015129202","doi":"10.1128/iai.00276-09","title":"Expression of Nlrp1b Inflammasome Components in Human Fibroblasts Confers Susceptibility to Anthrax Lethal Toxin","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Inflammasome; Biology; Anthrax toxin; Cell biology; Transfection; Caspase 1; Cell culture; ADP-ribosylation; Toxin; Molecular biology; Programmed cell death; Secretion; Receptor; Microbiology; Apoptosis; Biochemistry; Recombinant DNA; Enzyme; NAD+ kinase","score_opus":0.024224019828292153,"score_gpt":0.2981705474482621,"score_spread":0.27394652761996996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015129202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860245,0.000027170405,0.00013981388,0.000044970027,0.0000571168,0.00018121554,0.000007569509,0.0000063996154,0.0009332787],"genre_scores_gemma":[0.999742,0.000051772186,0.000034547353,0.000034786077,0.000036844805,0.0000036158274,0.00004422517,0.0000046047535,0.000047662048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924475,0.0001421828,0.00020052666,0.00017084347,0.00008451715,0.00015716314],"domain_scores_gemma":[0.99958134,0.000009404466,0.00004340823,0.00022349562,0.00006523709,0.000077145334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030627544,0.000093456634,0.00014048073,0.00007322219,0.0000867732,0.000016238324,0.00006939698,0.00011792345,0.000048780163],"category_scores_gemma":[0.0000814666,0.00008998644,0.00003853374,0.000092742484,0.000075507145,0.000008194825,0.00008536211,0.00012759664,0.0000020840296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020043053,0.00013594539,0.025266288,0.000016563105,0.0000030589222,4.5760802e-7,0.00008423199,0.00001419743,0.9712744,0.00002053719,0.000044175016,0.00293973],"study_design_scores_gemma":[0.00043344134,0.00050759234,0.46601638,0.000023889948,9.197195e-7,0.0000016233362,0.000013032694,0.0000056429667,0.5320484,0.000044154585,0.00083888334,0.00006602474],"about_ca_topic_score_codex":0.00060690066,"about_ca_topic_score_gemma":0.00022429661,"teacher_disagreement_score":0.4407501,"about_ca_system_score_codex":0.000016157801,"about_ca_system_score_gemma":0.000018688264,"threshold_uncertainty_score":0.36695403},"labels":[],"label_agreement":null},{"id":"W2015552706","doi":"10.1128/iai.72.1.537-545.2004","title":"<i>Helicobacter pylori</i>Disrupts STAT1-Mediated Gamma Interferon-Induced Signal Transduction in Epithelial Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Biology; STAT1; CagA; STAT protein; Helicobacter pylori; Signal transduction; Tyrosine phosphorylation; Immune system; Interferon; Interferon gamma; Microbiology; Phosphorylation; Molecular biology; STAT3; Immunology; Cell biology; Gene; Virulence","score_opus":0.020549426844210864,"score_gpt":0.2600493335579248,"score_spread":0.23949990671371396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015552706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678415,0.000035652574,0.00018330087,0.00030940224,0.001289466,0.00041055479,0.000015407757,0.00010562225,0.000866453],"genre_scores_gemma":[0.9989997,0.00018423403,0.00003518308,0.0004667604,0.00006947608,0.000028787896,0.000020312318,0.00002791191,0.00016759567],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982509,0.00043682256,0.0004481617,0.00030973795,0.00015503945,0.00039934454],"domain_scores_gemma":[0.99930334,0.00005322804,0.00010453912,0.00025096524,0.00013926302,0.0001486837],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00033896972,0.00027034618,0.00039359878,0.000281101,0.0001521549,0.000021588448,0.000046058747,0.00025103253,0.0002888366],"category_scores_gemma":[0.00013581739,0.00025466993,0.00010241375,0.00041299636,0.00012781889,0.00022079497,0.000037268746,0.0009094833,0.000054167605],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051911036,0.0005019437,0.31239146,0.000053485543,0.00015605663,0.00001215068,0.0014252911,0.000005130005,0.6823717,0.000009460917,0.000062007624,0.0024922038],"study_design_scores_gemma":[0.0050551,0.00124629,0.7532745,0.00011505669,0.000097575365,0.00016658308,0.00016794242,0.00003170897,0.2347789,0.000030681436,0.0048115873,0.0002240695],"about_ca_topic_score_codex":0.0006023699,"about_ca_topic_score_gemma":0.0004573645,"teacher_disagreement_score":0.4475928,"about_ca_system_score_codex":0.0002457569,"about_ca_system_score_gemma":0.00009617984,"threshold_uncertainty_score":0.9999906},"labels":[],"label_agreement":null},{"id":"W2017056768","doi":"10.1128/iai.00798-06","title":"The <i>mgtC</i> Gene of <i>Burkholderia cenocepacia</i> Is Required for Growth under Magnesium Limitation Conditions and Intracellular Survival in Macrophages","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Mutant; Vacuole; Green fluorescent protein; Intracellular parasite; Bacteria; Intracellular; Burkholderia; Gene; Cell biology; Cytoplasm; Biochemistry; Genetics","score_opus":0.019021476603557082,"score_gpt":0.2925024485237477,"score_spread":0.2734809719201906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017056768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995453,0.0012053458,0.0015318264,0.00088735373,0.000091266804,0.00043842438,0.00004764999,0.000019221863,0.00032589436],"genre_scores_gemma":[0.99852234,0.0007229274,0.00029183764,0.000059007572,0.00004292633,0.000038962844,0.00008700624,0.000010373241,0.00022464478],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992678,0.00010162915,0.00023017683,0.000119175915,0.00012257484,0.00015861959],"domain_scores_gemma":[0.99917877,0.00039101383,0.00007371946,0.0001307183,0.0001852991,0.0000405048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036233405,0.000088480716,0.00015782723,0.00008625189,0.0002320643,0.000035439243,0.000027528547,0.00005458462,0.000011178438],"category_scores_gemma":[0.00022741928,0.00007081709,0.000033907418,0.00018732988,0.00025586475,0.00013641868,0.000027082671,0.00012300388,0.0000011212915],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031643367,0.0002000143,0.034346677,0.0002623887,0.000023345066,0.0000014500954,0.00016713505,0.00001225754,0.9609703,0.0019939686,0.0005209467,0.0011850928],"study_design_scores_gemma":[0.0025160485,0.00049330946,0.75152516,0.000042773216,0.00004668335,0.000030011151,0.0003368865,0.0003629736,0.23489246,0.007875444,0.0017681418,0.000110103225],"about_ca_topic_score_codex":0.0015451364,"about_ca_topic_score_gemma":0.00042114806,"teacher_disagreement_score":0.72607785,"about_ca_system_score_codex":0.000039364702,"about_ca_system_score_gemma":0.00003655592,"threshold_uncertainty_score":0.28878373},"labels":[],"label_agreement":null},{"id":"W2017213049","doi":"10.1128/iai.71.4.1643-1649.2003","title":"Effect of Interleukin-8 and Granulocyte Colony-Stimulating Factor on Priming and Activation of Bovine Neutrophils","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Respiratory burst; Biology; Phagocytosis; Priming (agriculture); Granulocyte; Immunology; In vivo; Interleukin 8; In vitro; Microbiology; Flow cytometry; Cytokine; Biochemistry","score_opus":0.01098452810666915,"score_gpt":0.2585345660465204,"score_spread":0.24755003793985128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017213049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989414,0.0002443684,0.00011331243,0.000013650474,0.00011108896,0.00021050299,0.00000201218,0.000016233187,0.0003473911],"genre_scores_gemma":[0.9997497,0.00015853511,0.000008571602,0.0000110713645,0.0000036703902,0.0000050689614,0.000011445063,0.000005807045,0.00004613031],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998985,0.00057536276,0.00022764703,0.00009948986,0.000020594596,0.000091913585],"domain_scores_gemma":[0.9991957,0.00047010623,0.00017130343,0.00010534123,0.00004794699,0.000009618391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040678415,0.00010783658,0.00022461743,0.00013914378,0.00014987588,0.000008099832,0.00001916356,0.00012274006,0.000029871138],"category_scores_gemma":[0.00039927056,0.00009157689,0.000028237973,0.00007373609,0.00012862335,0.00013225588,0.000024937879,0.0001844515,0.0000015897318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008758042,0.000034238765,0.030064149,0.00012319277,0.00004967824,9.8660095e-8,0.00048135378,0.0000060137363,0.9439889,0.00027173202,0.000003111332,0.024101691],"study_design_scores_gemma":[0.0012125897,0.0019437539,0.21857476,0.000092449525,0.00002209944,0.00001654939,0.000028339831,0.000022023163,0.7776255,0.000020170415,0.00037628532,0.00006546654],"about_ca_topic_score_codex":0.00024734717,"about_ca_topic_score_gemma":0.0000038828707,"teacher_disagreement_score":0.18851061,"about_ca_system_score_codex":0.000016762599,"about_ca_system_score_gemma":0.000011195984,"threshold_uncertainty_score":0.3734397},"labels":[],"label_agreement":null},{"id":"W2018391577","doi":"10.1128/iai.00780-08","title":"Characterization of Two <i>Campylobacter jejuni</i> Strains for Use in Volunteer Experimental-Infection Studies","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Campylobacter jejuni; Biology; Heptose; Flagellin; Microbiology; Molecular mimicry; Genome; Gene; Serotype; Phase variation; Genetics; Mutant; Bacteria; Phenotype; Antigen","score_opus":0.10348907464616855,"score_gpt":0.313240490996616,"score_spread":0.20975141635044744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018391577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925745,0.0000643652,0.000038793267,0.00005456287,0.00023443658,0.00024212139,0.000022315126,0.00003417591,0.00005177505],"genre_scores_gemma":[0.9987943,0.00073826354,0.000028848679,0.00016287267,0.000063012856,0.00003710975,0.0001000264,0.0000011238602,0.000074408854],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99921405,0.00017278203,0.00026189067,0.00015573944,0.00004851664,0.00014704421],"domain_scores_gemma":[0.9995434,0.00015933574,0.00012252283,0.00004799786,0.000094919786,0.00003179554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023141118,0.000111684036,0.00022206391,0.000029564095,0.00018049714,0.000011531397,0.00003369739,0.000077502154,0.00004257326],"category_scores_gemma":[0.000087868466,0.000055157383,0.00006636618,0.00017873588,0.00011302713,0.0002884641,0.00003529294,0.000088798064,0.0000019746824],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031500265,0.00014840373,0.4490491,0.000006034375,0.000012604412,2.4075032e-7,0.0002263224,0.0000015236415,0.54832286,0.000049871778,0.000022146722,0.0021294449],"study_design_scores_gemma":[0.0003580119,0.0003418705,0.9671691,0.000016356043,0.0000065132913,0.000016643718,0.0000771966,0.000053319956,0.029707087,0.00008009762,0.0020711583,0.00010262193],"about_ca_topic_score_codex":0.002579674,"about_ca_topic_score_gemma":0.0014395408,"teacher_disagreement_score":0.5186157,"about_ca_system_score_codex":0.00003259561,"about_ca_system_score_gemma":0.000004128228,"threshold_uncertainty_score":0.38997126},"labels":[],"label_agreement":null},{"id":"W2020455774","doi":"10.1128/iai.01082-08","title":"Roles of the Extraintestinal Pathogenic <i>Escherichia coli</i> ZnuACB and ZupT Zinc Transporters during Urinary Tract Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Trace Elements in Health","field":"Nursing","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Armand-Frappier Foundation","keywords":"Escherichia coli; Complementation; Mutant; Biology; Zinc; Microbiology; Transporter; Virulence; Urinary system; Hydrogen peroxide; Biochemistry; Chemistry; Gene; Endocrinology","score_opus":0.020247147629773848,"score_gpt":0.25992254774468376,"score_spread":0.23967540011490993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020455774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99833965,0.00022168091,0.000071506016,0.00015316336,0.0005410934,0.00030840177,0.000010015553,0.00008956084,0.00026490464],"genre_scores_gemma":[0.9993074,0.00038911952,0.00008229837,0.000097829456,0.00005182049,0.000012701146,0.0000038832977,0.000018202301,0.000036764988],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988798,0.0002715612,0.000327059,0.0001705632,0.000143096,0.00020790266],"domain_scores_gemma":[0.99940753,0.00007771635,0.00017763145,0.00021782145,0.00005139067,0.000067881774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029901983,0.00015567776,0.00017073264,0.00008259572,0.0007332874,0.000014914694,0.000055011013,0.00008805705,0.000024833846],"category_scores_gemma":[0.00005834504,0.00013634219,0.00007481346,0.00021502771,0.00024381546,0.00024701402,0.00002608261,0.00045751518,0.0000011203671],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018914178,0.0005014945,0.9048005,0.00017986055,0.000018395316,0.000003905075,0.0025736024,0.000033686592,0.08594224,0.0000133509275,0.000013041167,0.005730824],"study_design_scores_gemma":[0.0007959913,0.00045022773,0.9879766,0.000090333495,0.000041088006,0.0005976995,0.00009489544,0.000060905648,0.009072775,0.00004082127,0.000650795,0.00012785557],"about_ca_topic_score_codex":0.001711066,"about_ca_topic_score_gemma":0.00034490827,"teacher_disagreement_score":0.08317615,"about_ca_system_score_codex":0.000070696085,"about_ca_system_score_gemma":0.000032696156,"threshold_uncertainty_score":0.5639928},"labels":[],"label_agreement":null},{"id":"W2021331037","doi":"10.1128/iai.71.8.4742-4748.2003","title":"Effect of Inactivation of the Arg- and/or Lys-Gingipain Gene on Selected Virulence and Physiological Properties of <i>Porphyromonas gingivalis</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Porphyromonas gingivalis; Virulence; Microbiology; Bacterial adhesin; Biology; Cysteine protease; Mutant; Biofilm; Gene; Protease; Biochemistry; Enzyme; Bacteria; Genetics","score_opus":0.03163587295642762,"score_gpt":0.2846903420168054,"score_spread":0.25305446906037776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021331037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994557,0.00022073794,0.00001590971,0.000008648206,0.000052888183,0.00017506271,0.000007991002,0.000008820565,0.000054228592],"genre_scores_gemma":[0.9997544,0.00017738232,0.000008877963,0.000012845148,0.0000046008195,0.0000056493154,0.000002350014,0.000003169121,0.000030714236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868447,0.00094409235,0.00014670924,0.00009501176,0.000052609215,0.0000770986],"domain_scores_gemma":[0.9995627,0.00012242883,0.00010053651,0.00011635574,0.00008308422,0.000014920523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044211926,0.00007612995,0.00017776804,0.000045075834,0.00012125855,0.000008053547,0.00003960864,0.000088122884,0.000024164938],"category_scores_gemma":[0.00058870635,0.0000435417,0.000026544738,0.00017320087,0.00032866144,0.00006028418,0.000056569497,0.00019735318,4.5264403e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026149154,0.00006327607,0.14052197,0.00013783529,0.000021407152,2.2049633e-7,0.000085443506,0.000004592944,0.8579372,0.00006415054,0.0000056592776,0.00089674117],"study_design_scores_gemma":[0.00024656125,0.00049402367,0.40792474,0.00005101579,0.0000071159798,0.000012191911,0.000009877853,0.000021454623,0.5911676,0.000026817028,0.000010245696,0.000028322267],"about_ca_topic_score_codex":0.0006009766,"about_ca_topic_score_gemma":0.000026273214,"teacher_disagreement_score":0.26740277,"about_ca_system_score_codex":0.000009071436,"about_ca_system_score_gemma":0.000018081746,"threshold_uncertainty_score":0.17755789},"labels":[],"label_agreement":null},{"id":"W2023924882","doi":"10.1128/iai.73.10.7032-7039.2005","title":"Identification of <i>Actinobacillus suis</i> Genes Essential for the Colonization of the Upper Respiratory Tract of Swine","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Trois-Rivières; University of Guelph","funders":"","keywords":"Biology; Colonization; Respiratory tract; Actinobacillus; Microbiology; Actinobacillus pleuropneumoniae; Identification (biology); Respiratory tract infections; Pasteurellaceae; Gene; Respiratory system; Virology; Bacteria; Serotype; Genetics; Antibiotics; Anatomy; Haemophilus influenzae; Ecology","score_opus":0.018667062760890297,"score_gpt":0.29222813994111185,"score_spread":0.27356107718022155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023924882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964173,0.0015308156,0.0011580063,0.00012457646,0.00028783645,0.00034820105,0.000061271036,0.000008210436,0.00006380067],"genre_scores_gemma":[0.9994376,0.00030958574,0.0000029308726,0.00002067162,0.000026832819,0.000016528518,0.00001527738,0.0000047738476,0.00016579937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992792,0.0002147225,0.00031548803,0.00007585081,0.000030021494,0.00008469785],"domain_scores_gemma":[0.9990401,0.00018727304,0.00024144808,0.00022730944,0.00029650095,0.000007312076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048495954,0.000061079365,0.00011844042,0.00006810463,0.00028712174,0.0000070957417,0.00007990721,0.000093294904,0.00012492902],"category_scores_gemma":[0.0001770699,0.000039860905,0.00010074983,0.00018494778,0.00030040662,0.00008291167,0.00004377733,0.00011436825,0.0000031165848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008893407,0.0002854122,0.02787842,0.00005099769,0.00006508812,5.881251e-9,0.00011504709,0.000100093945,0.965481,0.00045848513,0.00025158297,0.0052249786],"study_design_scores_gemma":[0.0005279677,0.00007252765,0.21728386,0.000011043196,0.00005639177,0.0000056599088,0.000057936493,0.00003319244,0.77344173,0.000030658448,0.0084434245,0.00003557324],"about_ca_topic_score_codex":0.0005716721,"about_ca_topic_score_gemma":0.000104501705,"teacher_disagreement_score":0.19203919,"about_ca_system_score_codex":0.000016343558,"about_ca_system_score_gemma":0.00006323886,"threshold_uncertainty_score":0.22083373},"labels":[],"label_agreement":null},{"id":"W2027187700","doi":"10.1128/iai.00645-07","title":"Induction of Nitric Oxide Synthase and Activation of Signaling Proteins in<i>Anopheles</i>Mosquitoes by the Malaria Pigment, Hemozoin","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Anopheles stephensi; Biology; Hemozoin; Protein kinase B; Cell biology; Plasmodium falciparum; MAPK/ERK pathway; Signal transduction; Nitric oxide synthase; Protein kinase A; Kinase; Immunology; Nitric oxide; Malaria","score_opus":0.012642547112328659,"score_gpt":0.23541345256694085,"score_spread":0.2227709054546122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027187700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734825,0.00041857868,0.0015790041,0.000055431403,0.0001163828,0.00036122146,0.0000058066075,0.00001883271,0.00009651184],"genre_scores_gemma":[0.999688,0.0001214742,0.00004518246,0.000034437784,0.000005482172,0.000012996052,0.000020854375,0.000008485772,0.00006303737],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989092,0.00041590625,0.000354224,0.00012209536,0.000037487567,0.00016113376],"domain_scores_gemma":[0.9992819,0.00022345404,0.00024309666,0.0001651665,0.00007584778,0.00001055391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011987226,0.000117444884,0.00019343913,0.00021514422,0.00018462059,0.000008796096,0.000059126152,0.0001981487,0.00004970715],"category_scores_gemma":[0.00020325102,0.00009446053,0.000031547963,0.00029823044,0.00019486816,0.0001644391,0.00005939155,0.0003477074,0.0000027172548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033794463,0.0001642373,0.003411527,0.000038953523,0.000042626234,1.9814287e-7,0.00035363718,0.0000037356851,0.9884243,0.0003518463,0.000017659615,0.0068533556],"study_design_scores_gemma":[0.00082727696,0.00016444476,0.07249831,0.000064544176,0.000018811936,0.00003408358,0.0006881163,0.000009622271,0.9251406,0.00027286907,0.00020007475,0.00008123561],"about_ca_topic_score_codex":0.0031171762,"about_ca_topic_score_gemma":0.000045312463,"teacher_disagreement_score":0.06908678,"about_ca_system_score_codex":0.000040106548,"about_ca_system_score_gemma":0.000029256864,"threshold_uncertainty_score":0.4712259},"labels":[],"label_agreement":null},{"id":"W2028647317","doi":"10.1128/iai.71.10.5514-5522.2003","title":"Kinome Analysis of Host Response to Mycobacterial Infection: a Novel Technique in Proteomics","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Kinome; Biology; Lipoarabinomannan; Phosphorylation; Cell biology; Mycobacterium bovis; Kinase; Signal transduction; Proteomics; Protein kinase A; Protein phosphorylation; Proteome; Microbiology; Biochemistry; Mycobacterium tuberculosis","score_opus":0.03185100677812513,"score_gpt":0.3426503031163072,"score_spread":0.31079929633818204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028647317","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479365,0.000011787057,0.0036702675,0.0003134116,0.000067043155,0.00055774197,0.000008341739,0.000023918385,0.00055383716],"genre_scores_gemma":[0.9987933,0.000102544975,0.00072052923,0.00019463629,0.00001764639,0.00010858911,0.000010501678,0.000006108087,0.000046127847],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987731,0.0005456415,0.00029112995,0.000142042,0.00007574729,0.00017234303],"domain_scores_gemma":[0.9993201,0.00016781985,0.00005860033,0.00023174025,0.00011185075,0.0001098894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018426719,0.00008959487,0.00036219737,0.00095714105,0.000058126046,0.000008523928,0.000022717162,0.00013325938,0.000116874835],"category_scores_gemma":[0.0028907494,0.00008149966,0.00008960198,0.0013653454,0.00006382892,0.000064006555,0.00003300728,0.0002908664,0.000004272109],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001298883,0.00021963977,0.46073207,0.000020791134,0.00013402017,0.000001099997,0.00009569883,0.000021989963,0.53714967,0.000101372934,0.000016563823,0.00020819505],"study_design_scores_gemma":[0.00073795684,0.0006692082,0.9650613,0.000026006304,0.00007828542,0.000038637947,0.000011329865,0.000055475906,0.02770875,0.000016481645,0.00552767,0.00006891709],"about_ca_topic_score_codex":0.0056773853,"about_ca_topic_score_gemma":0.00074715196,"teacher_disagreement_score":0.50944096,"about_ca_system_score_codex":0.00010938116,"about_ca_system_score_gemma":0.00008855268,"threshold_uncertainty_score":0.8582546},"labels":[],"label_agreement":null},{"id":"W2029004774","doi":"10.1128/iai.01273-09","title":"Characterization of the Specific Interaction between Sialoadhesin and Sialylated <i>Campylobacter jejuni</i> Lipooligosaccharides","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Wellcome Trust","keywords":"Campylobacter jejuni; Biology; Microbiology; Campylobacter; Bacteria","score_opus":0.012016474698028192,"score_gpt":0.2542190143580903,"score_spread":0.2422025396600621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029004774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988572,0.000013869609,0.00020423094,0.00013650648,0.00022061403,0.00017414485,0.000012857052,0.0000084910835,0.000372059],"genre_scores_gemma":[0.99936366,0.00023133265,0.000015549142,0.000040174047,0.00012075821,0.0000054443008,0.00008356027,0.000007057879,0.000132443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946743,0.000101143974,0.00015076666,0.00012194929,0.00007305387,0.000085677035],"domain_scores_gemma":[0.9995525,0.0000131071665,0.00008948017,0.00020562694,0.00010073073,0.000038567254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001937597,0.00007935327,0.00008126815,0.000051170035,0.00015974163,0.000042669857,0.000055806457,0.00012260587,0.000056176184],"category_scores_gemma":[0.00007768258,0.000062443476,0.00003376154,0.00011372217,0.00011370036,0.000017198274,0.00009204853,0.00023222255,0.000003034686],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003339538,0.000028529292,0.054808848,0.000009107628,0.000012284657,3.676623e-8,0.000042401905,2.64749e-7,0.9358893,0.00004527004,0.000018891942,0.00911167],"study_design_scores_gemma":[0.0001752469,0.00005745895,0.43803656,0.000006212809,0.000004238251,0.0000065031977,0.000008043518,0.000012412196,0.5390228,0.000021749429,0.022601927,0.000046835543],"about_ca_topic_score_codex":0.00019824643,"about_ca_topic_score_gemma":0.00008820791,"teacher_disagreement_score":0.3968665,"about_ca_system_score_codex":0.0000043743544,"about_ca_system_score_gemma":0.000018221424,"threshold_uncertainty_score":0.25463712},"labels":[],"label_agreement":null},{"id":"W2029768934","doi":"10.1128/iai.68.11.6154-6161.2000","title":"Modulation of B-Cell Proliferative Response by a Soluble Extract of<i>Nippostrongylus brasiliensis</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helminth infection and control","field":"Veterinary","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Nippostrongylus brasiliensis; Ionomycin; Biology; Stimulation; Lipopolysaccharide; Immune system; Inhibitory postsynaptic potential; Concanavalin A; Phorbol; Cell growth; Cell biology; Immunology; Molecular biology; Endocrinology; In vitro; Biochemistry; Protein kinase C; Signal transduction","score_opus":0.022930568127536986,"score_gpt":0.290973870703645,"score_spread":0.26804330257610803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029768934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99226344,0.0000618906,0.00053273333,0.00005343743,0.00010466514,0.0002542434,0.000020585336,0.00005293408,0.0066560544],"genre_scores_gemma":[0.9982817,0.000054828106,0.000037840407,0.00007392721,0.000014253332,0.000014843268,0.00001300956,0.000010991422,0.0014985852],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987649,0.0005195654,0.000337663,0.00013517853,0.000111076544,0.0001316412],"domain_scores_gemma":[0.9993319,0.00013779356,0.00014130362,0.00021024172,0.00012344956,0.00005532007],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004622844,0.00012177673,0.00021011123,0.00009163514,0.00014138677,0.000017008539,0.000038790786,0.000103865365,0.0010188884],"category_scores_gemma":[0.0000768544,0.00012002445,0.00007812129,0.00016201877,0.000092918766,0.00024782273,0.000017033251,0.00018726785,0.000032065305],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039795944,0.0006611166,0.011986203,0.00004087061,0.000041037274,0.000001259684,0.0008153763,0.00006194429,0.95268667,0.000028500106,0.00059059437,0.029106857],"study_design_scores_gemma":[0.005502692,0.005334382,0.62702554,0.00008316569,0.00007449538,0.00017763245,0.00026491107,0.008902703,0.3100238,0.00013317056,0.041994218,0.0004832277],"about_ca_topic_score_codex":0.0008921335,"about_ca_topic_score_gemma":0.000021800975,"teacher_disagreement_score":0.6426628,"about_ca_system_score_codex":0.000029549146,"about_ca_system_score_gemma":0.000051922314,"threshold_uncertainty_score":0.9998943},"labels":[],"label_agreement":null},{"id":"W2031276022","doi":"10.1128/iai.73.7.3888-3895.2005","title":"Infection-Stimulated Fibrin Deposition Controls Hemorrhage and Limits Hepatic Bacterial Growth during Listeriosis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Blood properties and coagulation","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Heart, Lung, and Blood Institute","keywords":"Fibrin; Listeria monocytogenes; Fibrinogen; Microbiology; Biology; Immunology; Coagulation; Peritoneal cavity; Bacteria; Medicine; Biochemistry; Internal medicine; Anatomy","score_opus":0.013002412138772524,"score_gpt":0.2337652466162238,"score_spread":0.2207628344774513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031276022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99831605,0.00014631018,0.0001637871,0.00029530612,0.00014120035,0.00028429338,0.0000021956002,0.000116150244,0.00053470675],"genre_scores_gemma":[0.99903125,0.00031587773,0.000096158736,0.0001778484,0.00020362942,0.000015957008,0.000031839943,0.000013686541,0.000113778595],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993437,0.00008805599,0.00021886977,0.00014231043,0.00007758895,0.00012947168],"domain_scores_gemma":[0.9996104,0.000029662428,0.00007064555,0.00011704678,0.00009056059,0.000081644685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010189571,0.00012704075,0.00019610148,0.000092972725,0.00029921252,0.00007849643,0.000011504502,0.00010492807,0.000111662295],"category_scores_gemma":[0.000073152725,0.000115952374,0.000043422628,0.00010663912,0.000040649524,0.00031672785,0.000029353207,0.00016751993,0.000009984664],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00100692,0.00028887735,0.44518995,0.0004109643,0.000114892064,0.0000046340665,0.00041089018,0.00003844015,0.5072233,0.000021430824,0.000014425309,0.045275226],"study_design_scores_gemma":[0.002564877,0.00038002015,0.9486831,0.00009997374,0.00013418209,0.00024685982,0.0000069865805,0.0048960503,0.042683315,0.000010708518,0.00016644513,0.00012749246],"about_ca_topic_score_codex":0.0028451732,"about_ca_topic_score_gemma":0.00025020613,"teacher_disagreement_score":0.50349313,"about_ca_system_score_codex":0.000054356726,"about_ca_system_score_gemma":0.00001368702,"threshold_uncertainty_score":0.47284007},"labels":[],"label_agreement":null},{"id":"W2031445899","doi":"10.1128/iai.00762-07","title":"Neutrophils Play an Important Role in Host Resistance to Respiratory Infection with <i>Acinetobacter baumannii</i> in Mice","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Research Council Canada","keywords":"Biology; Chemokine; Acinetobacter baumannii; Immunology; Proinflammatory cytokine; Macrophage inflammatory protein; Microbiology; Tumor necrosis factor alpha; Pneumonia; Respiratory system; Spleen; Respiratory infection; Immune system; Inflammation; Medicine; Bacteria; Internal medicine; Pseudomonas aeruginosa","score_opus":0.00830968665926941,"score_gpt":0.24064591800524293,"score_spread":0.23233623134597353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031445899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974785,0.00052896095,0.000100293655,0.000065395514,0.00020783156,0.00033939685,0.0000021374783,0.00005929905,0.001218188],"genre_scores_gemma":[0.99918604,0.00014888818,0.00001528722,0.00033282724,0.000025115689,0.000024676187,0.000034614863,0.000015333824,0.00021722671],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984806,0.00042946654,0.0004770908,0.00024397239,0.00003844635,0.00033038692],"domain_scores_gemma":[0.99941653,0.0000827588,0.00013275123,0.0002561796,0.00007680468,0.000034988017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001389189,0.00018297693,0.00022611672,0.0005324849,0.00018850318,0.000028017581,0.00006401954,0.00023245682,0.000045845798],"category_scores_gemma":[0.0000641336,0.00016879341,0.000028061188,0.00047766918,0.00008050347,0.00047324007,0.00003766205,0.0005142003,0.000043318676],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017341255,0.0001608314,0.2619215,0.0000127635385,0.000015839534,0.000006812479,0.0010957167,0.000015633206,0.7334654,0.00014180166,0.000049104652,0.0013805353],"study_design_scores_gemma":[0.0012278007,0.00045951598,0.80814064,0.00006876157,0.0000068175987,0.000023470795,0.0001294123,0.0000013303787,0.15791215,0.000027676417,0.031821493,0.0001809545],"about_ca_topic_score_codex":0.0035627228,"about_ca_topic_score_gemma":0.03043675,"teacher_disagreement_score":0.5755532,"about_ca_system_score_codex":0.00012899975,"about_ca_system_score_gemma":0.000047851743,"threshold_uncertainty_score":0.9872553},"labels":[],"label_agreement":null},{"id":"W2032467031","doi":"10.1128/iai.02427-14","title":"Antibody Response Specific to the Capsular Polysaccharide Is Impaired in Streptococcus suis Serotype 2-Infected Animals","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Streptococcus suis; Microbiology; Serotype; Isotype; Antibody; Virulence; Virology; Immunoglobulin G; Titer; Immune system; Immunology; Gene; Monoclonal antibody","score_opus":0.022514994744937764,"score_gpt":0.3173255022930974,"score_spread":0.29481050754815963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032467031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652517,0.000099992314,0.0003787727,0.0009828757,0.00018310595,0.0010113205,0.000011638631,0.00011372579,0.0006934276],"genre_scores_gemma":[0.99913514,0.000115574796,0.000031906937,0.00032657254,0.000077656645,0.00009058667,0.00001732732,0.000020105426,0.00018514745],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986143,0.00040818317,0.0003008815,0.00027024737,0.00013429884,0.00027206057],"domain_scores_gemma":[0.99893,0.00018460555,0.000072669696,0.00052862347,0.00012649933,0.00015762165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006532413,0.00020677003,0.00028717934,0.00030061955,0.00030128122,0.0000668687,0.00005429342,0.00011556901,0.00043672996],"category_scores_gemma":[0.0003274799,0.00014964794,0.0001003972,0.0007419756,0.0000661242,0.00009152667,0.00006888931,0.00031961148,0.00017595975],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062728784,0.0003040253,0.88290507,0.000010585631,0.0000623539,0.0000064664932,0.00047652784,0.0000055935066,0.10879552,0.00005462825,0.0002504439,0.006501499],"study_design_scores_gemma":[0.0016054721,0.0010714037,0.9658721,0.000066623885,0.000039575447,0.000051732444,0.00007059719,0.0001346181,0.014913508,0.000071555325,0.01596064,0.00014214664],"about_ca_topic_score_codex":0.005868481,"about_ca_topic_score_gemma":0.00040276445,"teacher_disagreement_score":0.09388201,"about_ca_system_score_codex":0.00012642861,"about_ca_system_score_gemma":0.000046935602,"threshold_uncertainty_score":0.88714266},"labels":[],"label_agreement":null},{"id":"W2032715240","doi":"10.1128/iai.00977-06","title":"Monocyte Chemoattractant Protein 1 Does Not Contribute to Protective Immunity against Pneumococcal Pneumonia","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Biology; Monocyte; Pneumonia; Chemotaxis; Microbiology; Immunology; Knockout mouse; Pneumococcal pneumonia; Pneumococcal infections; Immunity; Immune system; Gene; Antibiotics; Medicine; Receptor","score_opus":0.013864786818982127,"score_gpt":0.2652143723112871,"score_spread":0.25134958549230496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032715240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99155104,0.000026505168,0.00054959336,0.0018658016,0.00027463917,0.002058415,0.00003575255,0.00033670754,0.003301528],"genre_scores_gemma":[0.9977529,0.000035438625,0.000035181612,0.00067693816,0.00020230646,0.00040519785,0.000031083036,0.000033588112,0.00082734344],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998289,0.00026029674,0.0004643587,0.00033540258,0.00022613775,0.00042480763],"domain_scores_gemma":[0.9987135,0.000070238064,0.00015728411,0.00047034246,0.00033543658,0.00025319378],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00049954734,0.0003268102,0.00045703852,0.0002830398,0.00085306366,0.00009544001,0.00007827489,0.00024257452,0.000038373804],"category_scores_gemma":[0.00028775693,0.00024823163,0.00016800195,0.00045438527,0.00017070366,0.00023974625,0.00011474758,0.0009631198,0.000071763585],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019641893,0.00055398536,0.020113528,0.00007157331,0.000067581386,0.00001526797,0.00011744007,0.000019395111,0.97485065,0.0001331697,0.000015778234,0.003845194],"study_design_scores_gemma":[0.0012806024,0.0005721685,0.6883735,0.00012436011,0.000054568754,0.00010393294,0.000056552464,0.000072495845,0.28939033,0.00016911964,0.019519748,0.000282651],"about_ca_topic_score_codex":0.0026245343,"about_ca_topic_score_gemma":0.00045033792,"teacher_disagreement_score":0.6854603,"about_ca_system_score_codex":0.0002590929,"about_ca_system_score_gemma":0.00013419952,"threshold_uncertainty_score":0.999997},"labels":[],"label_agreement":null},{"id":"W2033179792","doi":"10.1128/iai.68.6.3377-3384.2000","title":"Adhesion of <i>Aspergillus</i> Species to Extracellular Matrix Proteins: Evidence for Involvement of Negatively Charged Carbohydrates on the Conidial Surface","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences","keywords":"Extracellular matrix; Adhesion; Biology; Microbiology; Extracellular; Aspergillus; Biochemistry; Matrix (chemical analysis); Biophysics; Cell biology; Chemistry","score_opus":0.0731337392301648,"score_gpt":0.3222165160462341,"score_spread":0.24908277681606927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033179792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703914,0.0007136783,0.00013725054,0.000489639,0.00004234659,0.0012058596,0.000016369388,0.000014175668,0.00034151383],"genre_scores_gemma":[0.9974298,0.0007951874,0.00011999935,0.00007727357,0.000024853896,0.000024498988,0.000005115089,0.0000064563255,0.0015168105],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991999,0.00012950716,0.00026656347,0.00013123507,0.00016309794,0.00010969302],"domain_scores_gemma":[0.9991511,0.00028728353,0.00008762259,0.0002380955,0.00019029954,0.000045596025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061256567,0.000100101344,0.00022782438,0.000032378717,0.00014438108,0.000008678595,0.000046135043,0.000051287672,0.0003031999],"category_scores_gemma":[0.00043202017,0.00006711045,0.00008225151,0.00016740877,0.00014031006,0.000073140036,0.000016139044,0.00012216932,0.0000055275086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016837746,0.00024813565,0.028162148,0.0002389457,0.000031332314,2.9541096e-7,0.00088406145,0.00002706227,0.9666388,0.000577362,0.000120767516,0.0013873137],"study_design_scores_gemma":[0.00064171234,0.0017365715,0.20421322,0.00053398515,0.000040160412,6.6146623e-7,0.0003372103,0.00009612469,0.78842145,0.00010249158,0.003792649,0.00008374997],"about_ca_topic_score_codex":0.00086845405,"about_ca_topic_score_gemma":0.000110374705,"teacher_disagreement_score":0.17821732,"about_ca_system_score_codex":0.000039820006,"about_ca_system_score_gemma":0.000053961427,"threshold_uncertainty_score":0.33198264},"labels":[],"label_agreement":null},{"id":"W2034461787","doi":"10.1128/iai.01338-07","title":"A Novel Sensor Kinase-Response Regulator Hybrid Controls Biofilm Formation and Type VI Secretion System Activity in <i>Burkholderia cenocepacia</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Burkholderia cenocepacia; Biology; Biofilm; Regulator; Secretion; Response regulator; Microbiology; Type three secretion system; Kinase; Cell biology; Bacterial protein; Bacteria; Burkholderia; Virulence; Gene; Genetics; Biochemistry","score_opus":0.018601167223856116,"score_gpt":0.2533860791871611,"score_spread":0.23478491196330498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034461787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986614,0.00014911263,0.00059014023,0.00006917292,0.000100859426,0.0002826193,0.000030844552,0.000025576901,0.000090277346],"genre_scores_gemma":[0.99922436,0.0005366005,0.000046217072,0.0000292826,0.000043396456,0.000020391779,0.00004004881,0.000009503844,0.00005021996],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991629,0.00027892995,0.00014277044,0.00016725408,0.0000793105,0.00016881028],"domain_scores_gemma":[0.9995593,0.000030316876,0.000073512914,0.00017103556,0.00010935883,0.000056465648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003902705,0.00012410346,0.00015619784,0.00008248694,0.00024798498,0.000029930543,0.000029800769,0.000090282854,0.000002769305],"category_scores_gemma":[0.00024283928,0.00012015649,0.000027267737,0.00010245122,0.000117344054,0.000030052302,0.00008645027,0.0001178006,0.0000023583557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001394534,0.000055837834,0.0042286883,0.00005223013,0.000021711112,0.0000023466532,0.00007940762,0.0000029457583,0.99347526,0.000005306976,0.000054291748,0.00062744116],"study_design_scores_gemma":[0.0015642608,0.00048607617,0.43566942,0.000033208773,0.0000077838395,0.0002492475,0.00008900163,0.00046358985,0.5590489,0.0000017050498,0.002237749,0.00014905473],"about_ca_topic_score_codex":0.00039877332,"about_ca_topic_score_gemma":0.000070880036,"teacher_disagreement_score":0.43442637,"about_ca_system_score_codex":0.00005565284,"about_ca_system_score_gemma":0.000041573978,"threshold_uncertainty_score":0.48998392},"labels":[],"label_agreement":null},{"id":"W2034479706","doi":"10.1128/iai.00113-13","title":"Group B Streptococcus and Streptococcus suis Capsular Polysaccharides Induce Chemokine Production by Dendritic Cells via Toll-Like Receptor 2- and MyD88-Dependent and -Independent Pathways","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"","keywords":"Streptococcus suis; TLR2; Microbiology; Biology; Streptococcus agalactiae; Chemokine; Tumor necrosis factor alpha; B-cell activating factor; Toll-like receptor; Immune system; Antibody; Streptococcus; B cell; Immunology; Innate immune system; Bacteria; Biochemistry","score_opus":0.01019094375998688,"score_gpt":0.22011234360728635,"score_spread":0.20992139984729946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034479706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966797,0.0009672107,0.0001324682,0.00025746567,0.0005496515,0.0011423072,0.000030430081,0.000126082,0.00011466948],"genre_scores_gemma":[0.99659944,0.002203343,0.000045546956,0.00013475303,0.00012120165,0.000175181,0.00004223456,0.000026833894,0.0006514982],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863356,0.00010088928,0.0003346966,0.00044667796,0.00020007338,0.00028407993],"domain_scores_gemma":[0.99913704,0.00004552338,0.00012566286,0.00025460444,0.00014364041,0.00029354944],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002521427,0.00029081697,0.00033321275,0.00017122675,0.00040526473,0.00015192214,0.00003600817,0.00018165914,0.00021985814],"category_scores_gemma":[0.000054412605,0.00025709003,0.000042907803,0.00014197222,0.0001891938,0.000512994,0.00015187316,0.0004782649,0.000019928528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040337814,0.00029701705,0.06860409,0.00021042455,0.000087251574,0.0000050775384,0.00028670565,3.782477e-7,0.9028511,0.00004035787,0.0004521876,0.027125044],"study_design_scores_gemma":[0.0026476649,0.0011692755,0.45541638,0.00020301758,0.00022125171,0.0008983036,0.00062724826,0.00009231198,0.5336237,0.0005226619,0.0040014056,0.0005767944],"about_ca_topic_score_codex":0.009423503,"about_ca_topic_score_gemma":0.0002458855,"teacher_disagreement_score":0.3868123,"about_ca_system_score_codex":0.00007699233,"about_ca_system_score_gemma":0.000022179169,"threshold_uncertainty_score":0.99998814},"labels":[],"label_agreement":null},{"id":"W2036077051","doi":"10.1128/iai.01169-10","title":"The Bordetella avium<i>BAV1965</i>-<i>1962</i>Fimbrial Locus Is Regulated by Temperature and Produces Fimbriae Involved in Adherence to Turkey Tracheal Tissue","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Fimbria; Biology; Bordetella bronchiseptica; Microbiology; Bordetella; Operon; Bordetella pertussis; Virulence; Pertactin; Locus (genetics); Respiratory tract; Chaperone (clinical); Bacteria; Gene; Mutant; Genetics; Respiratory system; Anatomy; Pertussis toxin","score_opus":0.018877632953830995,"score_gpt":0.25118618084698896,"score_spread":0.23230854789315797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036077051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99589396,0.0015727979,0.0000037381633,0.00025988245,0.001344427,0.0004400681,0.000028758965,0.000070057045,0.00038633484],"genre_scores_gemma":[0.9976749,0.00068958016,0.0000092693335,0.00013214853,0.000058524012,0.000044260767,0.000036670717,0.000014093192,0.0013405563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867254,0.00038941117,0.00032708762,0.00030220402,0.000019703066,0.0002890558],"domain_scores_gemma":[0.9993766,0.00008811939,0.000094680516,0.0002893433,0.00010629878,0.000044975095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004233148,0.00021815726,0.0002554127,0.00009179173,0.00062428764,0.000089744346,0.00010583406,0.00033707387,0.000245712],"category_scores_gemma":[0.000120860284,0.00016190608,0.000034301112,0.0002840492,0.00017248117,0.0001754356,0.00009753782,0.00053710834,0.000040476494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004314118,0.00017028111,0.013769195,0.000015099569,0.000051548388,3.7755728e-7,0.0019773596,2.449074e-7,0.965483,0.000043938235,0.0037047735,0.014352784],"study_design_scores_gemma":[0.0017135368,0.001175646,0.20101142,0.000050023064,0.0000356624,0.000063501364,0.00027078693,0.0000020302969,0.68205154,0.00015246488,0.11312109,0.00035231363],"about_ca_topic_score_codex":0.014397237,"about_ca_topic_score_gemma":0.0025786667,"teacher_disagreement_score":0.28343147,"about_ca_system_score_codex":0.000024094805,"about_ca_system_score_gemma":0.000042061074,"threshold_uncertainty_score":0.992166},"labels":[],"label_agreement":null},{"id":"W2038523254","doi":"10.1128/iai.00024-09","title":"Kinetics and Phenotype of Vaccine-Induced CD8<sup>+</sup>T-Cell Responses to<i>Toxoplasma gondii</i>","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Cancer Research Institute","keywords":"Biology; Cytotoxic T cell; Perforin; Antigen; CD8; T cell; Immunology; Cytolysis; Virology; Immune system; In vitro","score_opus":0.01827056012506153,"score_gpt":0.2764471091949357,"score_spread":0.2581765490698742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038523254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958092,0.0009376499,0.000048314087,0.00047600863,0.00013948706,0.00028352338,0.000022927301,0.0000722182,0.002210674],"genre_scores_gemma":[0.99768144,0.00065431296,0.000083105144,0.00021526027,0.000018318106,0.000009303116,0.000013627682,0.0000107174465,0.0013138987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987195,0.00040653095,0.0002872616,0.0002277659,0.00004714978,0.0003118002],"domain_scores_gemma":[0.9990659,0.00034722642,0.00008980066,0.00028968905,0.00015377828,0.000053632004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031404803,0.0001996237,0.00032556636,0.00026637432,0.00030062482,0.00002225222,0.00010096346,0.00020350904,0.00008438711],"category_scores_gemma":[0.0005002012,0.00018019787,0.000049109825,0.00027140003,0.000110716304,0.00009882535,0.00015885867,0.0004387246,0.00006777589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008203454,0.00035375904,0.012291676,0.000041715837,0.00007933895,0.0000018389335,0.0013759695,0.000013045928,0.96618086,0.00014401496,0.0016273371,0.017070085],"study_design_scores_gemma":[0.0024989564,0.0034376597,0.35820284,0.00004789241,0.000053253763,0.00007439099,0.0004205476,0.000017775188,0.60657346,0.00021669215,0.028148573,0.0003079504],"about_ca_topic_score_codex":0.00036259016,"about_ca_topic_score_gemma":0.000062460735,"teacher_disagreement_score":0.3596074,"about_ca_system_score_codex":0.000030160956,"about_ca_system_score_gemma":0.000029873916,"threshold_uncertainty_score":0.73482555},"labels":[],"label_agreement":null},{"id":"W2038629035","doi":"10.1128/iai.01528-13","title":"Phenotypic Screening of a Targeted Mutant Library Reveals Campylobacter jejuni Defenses against Oxidative Stress","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Campylobacter jejuni; Mutant; Oxidative stress; Microbiology; Campylobacter; Gene; Superoxide dismutase; Transcriptome; Reactive oxygen species; Phenotype; Genetics; Bacteria; Biochemistry; Gene expression","score_opus":0.01978619706342245,"score_gpt":0.22229391794169426,"score_spread":0.20250772087827182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038629035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973438,0.0001164624,0.000056160865,0.00015872678,0.00010149394,0.00011004583,0.000044151806,0.0000786975,0.0019904543],"genre_scores_gemma":[0.99892306,0.0002280697,0.00008547335,0.00044377134,0.00009944076,0.00000575158,0.00014752343,0.0000014308926,0.00006544851],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99870217,0.00059200736,0.00026845603,0.00017836355,0.00006601742,0.00019297109],"domain_scores_gemma":[0.9991556,0.00045643843,0.00017875725,0.00007846449,0.00005286783,0.000077896475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002871453,0.00013636469,0.00026062055,0.000023227221,0.00020097995,0.000028586943,0.00009961664,0.00011943357,0.00028499722],"category_scores_gemma":[0.00020402145,0.0000595673,0.00007600248,0.00022778468,0.0001164771,0.00021638942,0.00009780106,0.00017477585,0.000006965037],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006858049,0.00011929863,0.55669624,0.00001601465,0.000035143745,4.694756e-7,0.00015129917,0.0000073337187,0.37247732,0.0003183326,0.00012476918,0.06998523],"study_design_scores_gemma":[0.00015807414,0.000289154,0.97205794,0.00004598873,0.000012382733,0.000004748576,0.00017996867,0.000073310395,0.022278106,0.0007704183,0.0039876024,0.00014228118],"about_ca_topic_score_codex":0.0007296905,"about_ca_topic_score_gemma":0.00015326677,"teacher_disagreement_score":0.41536176,"about_ca_system_score_codex":0.0000057039642,"about_ca_system_score_gemma":0.0000037447753,"threshold_uncertainty_score":0.31205198},"labels":[],"label_agreement":null},{"id":"W2039151590","doi":"10.1128/iai.72.3.1441-1449.2004","title":"Invasion of Porcine Brain Microvascular Endothelial Cells by <i>Streptococcus suis</i> Serotype 2","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus suis; Biology; Microbiology; Pathogenesis; Meningitis; Serotype; Pathogen; Virology; Immunology; Virulence; Gene; Medicine","score_opus":0.010910298505090907,"score_gpt":0.2560368030854243,"score_spread":0.24512650458033342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039151590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972079,0.00016912901,0.0002494066,0.00018650317,0.00016761255,0.0005178773,0.000024129682,0.00006224847,0.0014151889],"genre_scores_gemma":[0.9989092,0.00030724824,0.00006500066,0.00019138539,0.000038587077,0.000027409806,0.00006711443,0.00001464481,0.0003794234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929583,0.00005291774,0.00023675087,0.00016611231,0.00010346541,0.00014492868],"domain_scores_gemma":[0.99940807,0.00003923159,0.000088639536,0.00026622525,0.0000996958,0.00009816549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013199744,0.00014803802,0.0002503005,0.00010299302,0.00013772496,0.000013192399,0.000025482537,0.000106633364,0.00018317881],"category_scores_gemma":[0.000052561096,0.0001249883,0.00012422501,0.00021694945,0.000096930395,0.00008951811,0.000035418965,0.00019224238,0.000031142543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007455107,0.0008217695,0.27087808,0.00006180062,0.00014104546,0.0000046192436,0.000080661746,0.000009913145,0.7230094,0.000043426862,0.0006611867,0.0042135487],"study_design_scores_gemma":[0.00437979,0.00081299775,0.16614307,0.000088046625,0.00009269373,0.00005171019,0.000023753331,0.0000024703775,0.81709784,0.00012180786,0.011083716,0.00010212635],"about_ca_topic_score_codex":0.0048799845,"about_ca_topic_score_gemma":0.000068875444,"teacher_disagreement_score":0.104735,"about_ca_system_score_codex":0.000070930386,"about_ca_system_score_gemma":0.000051869225,"threshold_uncertainty_score":0.7377109},"labels":[],"label_agreement":null},{"id":"W2039152620","doi":"10.1128/iai.00312-08","title":"Identification of<i>Mannheimia haemolytica</i>Adhesins Involved in Binding to Bovine Bronchial Epithelial Cells","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service; University of Wisconsin-Madison; Oklahoma State University; University of Guelph; University of Nebraska Medical Center; U.S. Department of Agriculture","keywords":"Bacterial adhesin; Biology; Identification (biology); Microbiology; Epithelium; Immunology; Virulence; Virology; Gene; Genetics","score_opus":0.037327487629232124,"score_gpt":0.2995398203407419,"score_spread":0.2622123327115098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039152620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850136,0.00004896126,0.00009776579,0.00025091952,0.00019156076,0.00039404625,0.000016721078,0.000036143916,0.00046251056],"genre_scores_gemma":[0.9988507,0.00042724234,0.000029127632,0.000054911136,0.000099624005,0.000014347229,0.000022528115,0.000014426506,0.00048708468],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988315,0.00009569659,0.00041614266,0.00019471985,0.00023858491,0.0002233674],"domain_scores_gemma":[0.9992988,0.000072828174,0.00007669949,0.00027601252,0.00013549329,0.00014015779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037268174,0.00012490082,0.0002672289,0.00040659367,0.00016157358,0.000019270827,0.000049403614,0.00010385812,0.000057287667],"category_scores_gemma":[0.00024830285,0.00012370208,0.00007174927,0.0005792589,0.000117166644,0.00009251882,0.00007703437,0.00033923273,0.00006803431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038572904,0.00038010944,0.03335084,0.00006200389,0.000020559883,0.0000146524035,0.00048676447,0.000012036759,0.96312636,0.000026546431,0.0002680639,0.0018663128],"study_design_scores_gemma":[0.001195147,0.00044066063,0.18502003,0.000050400045,0.000022356862,0.000050295737,0.00009556286,0.00022691037,0.81142545,0.000007619353,0.001359683,0.0001059094],"about_ca_topic_score_codex":0.0020616062,"about_ca_topic_score_gemma":0.00019126738,"teacher_disagreement_score":0.15170096,"about_ca_system_score_codex":0.00012777718,"about_ca_system_score_gemma":0.00012835211,"threshold_uncertainty_score":0.50444245},"labels":[],"label_agreement":null},{"id":"W2039442883","doi":"10.1128/iai.01406-13","title":"Identification of Mechanisms for Attenuation of the FSC043 Mutant of Francisella tularensis SCHU S4","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Francisella tularensis; Biology; Complementation; Tularemia; Virulence; Mutant; Phenotype; Gene; Intracellular; Intracellular parasite; Microbiology; Attenuated vaccine; Genetics","score_opus":0.010479335108819992,"score_gpt":0.2544178549857895,"score_spread":0.24393851987696952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039442883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.954932,0.000043094573,0.04457399,0.000021235272,0.00013079745,0.0001761169,0.000024039457,0.000001709811,0.00009707233],"genre_scores_gemma":[0.999731,0.00010170957,0.00007447848,0.000009929347,0.000022172202,0.000008230926,0.000019658919,0.00000493951,0.00002787975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947155,0.00009412726,0.00021598469,0.00008061868,0.000078066216,0.000059643193],"domain_scores_gemma":[0.9992989,0.000021906313,0.00017186043,0.00022466142,0.0002679112,0.000014775139],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005227663,0.00004862047,0.000099193414,0.000028029637,0.000066915156,0.0000049024475,0.000060759045,0.00007837243,0.000007110678],"category_scores_gemma":[0.0002881982,0.000037954524,0.00006709612,0.00007736933,0.0000837335,0.0000035468483,0.000039871884,0.000039056704,2.8482359e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006279198,0.00003827962,0.0010644958,0.000066132525,0.000016511625,1.6531948e-9,0.000035786852,0.00001170773,0.98977506,0.0006646646,0.000009907425,0.008254668],"study_design_scores_gemma":[0.00032617984,0.00018538542,0.047105033,0.000011950838,0.000013596396,7.355484e-7,0.00001414124,0.00039199198,0.9504862,0.0008560272,0.00057249615,0.00003625649],"about_ca_topic_score_codex":0.00012550618,"about_ca_topic_score_gemma":0.000027382455,"teacher_disagreement_score":0.046040535,"about_ca_system_score_codex":0.0000035233659,"about_ca_system_score_gemma":0.000019156023,"threshold_uncertainty_score":0.15477405},"labels":[],"label_agreement":null},{"id":"W2043238044","doi":"10.1128/iai.71.3.1075-1082.2003","title":"Production of the Type IV Secretion System Differs among <i>Brucella</i> Species as Revealed with VirB5- and VirB8-Specific Antisera","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Universidad de Cantabria","keywords":"Biology; Virulence; Microbiology; Brucella suis; Operon; Brucella; Western blot; Brucella melitensis; Antiserum; Periplasmic space; Gene; Virology; Antigen; Biochemistry; Genetics; Mutant; Escherichia coli; Brucellosis","score_opus":0.038085152884005075,"score_gpt":0.2663079476968251,"score_spread":0.22822279481282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043238044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941807,0.0005142991,0.000027632785,0.00010883093,0.0008022258,0.0005742765,0.000003459619,0.000078779194,0.003709822],"genre_scores_gemma":[0.99789715,0.0015915722,0.00004761084,0.000032139695,0.000047569323,0.000030295665,0.000008092503,0.00001998802,0.0003256122],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813634,0.0009852578,0.00031073432,0.0002798642,0.0001173041,0.00017047916],"domain_scores_gemma":[0.9989923,0.00014813455,0.00025686217,0.000430836,0.000117956886,0.00005386734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005741858,0.00020065396,0.00029977434,0.000077195305,0.0003793807,0.000030208108,0.000053519892,0.00013134922,0.00005001633],"category_scores_gemma":[0.0001694835,0.00013840942,0.000053048312,0.0002676084,0.00034083828,0.00014353337,0.000044468852,0.0002600068,0.000012626556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030658633,0.00018521401,0.9564814,0.00017628174,0.00010274206,0.000004730539,0.00040221843,0.000021390455,0.04031311,0.001018368,0.00057119824,0.00041679118],"study_design_scores_gemma":[0.00058386114,0.0008657769,0.9897598,0.00019854162,0.000065492146,0.00037573648,0.0004244694,0.000033162843,0.0043459074,0.00006869186,0.0031230696,0.0001554962],"about_ca_topic_score_codex":0.0010264978,"about_ca_topic_score_gemma":0.00009250417,"teacher_disagreement_score":0.035967205,"about_ca_system_score_codex":0.00012211014,"about_ca_system_score_gemma":0.000021113861,"threshold_uncertainty_score":0.56441724},"labels":[],"label_agreement":null},{"id":"W2046038981","doi":"10.1128/iai.01668-06","title":"Nasal Immunization with<i>Burkholderia multivorans</i>Outer Membrane Proteins and the Mucosal Adjuvant Adamantylamide Dipeptide Confers Efficient Protection against Experimental Lung Infections with<i>B. multivorans</i>and<i>B. cenocepacia</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Vaccination; Adjuvant; Immunogenicity; Immunology; Immunity; Nasal administration; Immune system; Burkholderia; Virology; Bacteria","score_opus":0.008880841898941177,"score_gpt":0.25866442129209244,"score_spread":0.24978357939315127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046038981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9667375,0.0007920519,0.027982453,0.00028775577,0.00012132284,0.0033661912,0.000010309934,0.00019412373,0.00050827104],"genre_scores_gemma":[0.9980955,0.0003206577,0.00088528043,0.00015325732,0.00007491727,0.0002909866,0.000043939926,0.00005345076,0.000082023755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99792033,0.0003169384,0.00042652397,0.0004302963,0.0004430983,0.00046281936],"domain_scores_gemma":[0.9986615,0.00024841324,0.00018529987,0.0003609351,0.000313643,0.00023017627],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009181091,0.00038859804,0.00045655528,0.00027324283,0.0010796124,0.00015969326,0.000061669474,0.00013666591,0.000019949124],"category_scores_gemma":[0.00021607259,0.0002536868,0.000061871346,0.00049973815,0.001284617,0.00037195103,0.000102460916,0.0007666534,0.000002381793],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011910895,0.0012215244,0.029292123,0.00062803744,0.00037215443,0.000034510642,0.006456837,0.0005626684,0.9386025,0.00021715334,0.0000088329225,0.010692733],"study_design_scores_gemma":[0.04746659,0.0049096486,0.32609424,0.0017118183,0.00042147157,0.00174166,0.004581914,0.023625726,0.58554494,0.000017950562,0.0027472374,0.0011367808],"about_ca_topic_score_codex":0.0035143737,"about_ca_topic_score_gemma":0.0012725713,"teacher_disagreement_score":0.35305756,"about_ca_system_score_codex":0.00019827673,"about_ca_system_score_gemma":0.00012508396,"threshold_uncertainty_score":0.99999154},"labels":[],"label_agreement":null},{"id":"W2046103870","doi":"10.1128/iai.01019-07","title":"Contribution of Type IV Pili to the Virulence of <i>Aeromonas salmonicida</i> subsp. <i>salmonicida</i> in Atlantic Salmon ( <i>Salmo salar</i> L.)","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Institute for Marine Biosciences","funders":"National Oceanic and Atmospheric Administration","keywords":"Pilus; Aeromonas salmonicida; Biology; Pilin; Virulence; Microbiology; Vibrio cholerae; Vibrionaceae; Mutant; Gene; Bacteria; Genetics","score_opus":0.012198222181863182,"score_gpt":0.23386752657082113,"score_spread":0.22166930438895796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046103870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995399,0.0025786178,0.000073982796,0.0002263786,0.00038670684,0.0005151949,0.000022474802,0.000046169393,0.0007514666],"genre_scores_gemma":[0.9979887,0.0013417767,0.000008460449,0.00023905306,0.000015197068,0.000015333571,0.00013761438,0.000013712244,0.00024016276],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998566,0.00033767286,0.0004886902,0.0002447406,0.000060533384,0.00030237858],"domain_scores_gemma":[0.999014,0.00011808774,0.00022067345,0.0003947353,0.00022163957,0.0000308448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004538584,0.00021633986,0.00039184355,0.00015256705,0.0002508674,0.0000082927445,0.00021622056,0.00019133522,0.00008731251],"category_scores_gemma":[0.0001711132,0.00016800081,0.00010466303,0.00060241536,0.00032452034,0.00013297572,0.00017729927,0.00036091165,0.000092987655],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006392277,0.00052297744,0.18375307,0.00006053791,0.00013212668,0.000005270913,0.0011241348,0.00004231531,0.80864185,0.00063474063,0.0037594435,0.0006843029],"study_design_scores_gemma":[0.0024183348,0.00067719584,0.69827855,0.0001833435,0.00013875416,0.00013436,0.00025940148,0.000015182386,0.24355608,0.00006847628,0.05389161,0.00037871694],"about_ca_topic_score_codex":0.004752283,"about_ca_topic_score_gemma":0.00082636223,"teacher_disagreement_score":0.56508577,"about_ca_system_score_codex":0.000053868313,"about_ca_system_score_gemma":0.000049909846,"threshold_uncertainty_score":0.7184062},"labels":[],"label_agreement":null},{"id":"W2047131012","doi":"10.1128/iai.00522-10","title":"Interaction between Pathogenic Bacteria and Intrauterine Leukocytes Triggers Alternative Molecular Signaling Cascades Leading to Labor in Women","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Preterm Birth and Chorioamnionitis","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Fetal membrane; Secretion; Trophoblast; Immunology; Microbiology; Extracellular; Internal medicine; Endocrinology; Andrology; Placenta; Fetus; Pregnancy; Cell biology","score_opus":0.012691503426109193,"score_gpt":0.28663946728784806,"score_spread":0.27394796386173886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047131012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99907684,0.000039472536,0.00012769975,0.00014955133,0.00023601249,0.00018476379,0.000009245902,0.000037420017,0.0001389956],"genre_scores_gemma":[0.99920547,0.0002542747,0.00015389406,0.00021569814,0.00010449653,0.000026549607,0.000013975258,0.000011062098,0.000014554424],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935573,0.000076808035,0.0001808585,0.00015052779,0.000063454536,0.00017262371],"domain_scores_gemma":[0.99958533,0.00006156006,0.000051426265,0.00010485638,0.00004818312,0.00014864952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002411257,0.00011430629,0.00020212033,0.00021258826,0.000081320664,0.00005491671,0.000027425387,0.00007787789,0.000071067094],"category_scores_gemma":[0.00014929203,0.00011083152,0.000023183658,0.00015633048,0.00004150465,0.00019755164,0.000045510275,0.00043780362,0.000004987958],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017386158,0.000029039686,0.087477475,0.00004529858,0.000040743897,0.000013455285,0.002107223,0.000001762389,0.82489944,0.000025124635,0.0000029956807,0.085183606],"study_design_scores_gemma":[0.0014280365,0.0005077831,0.71568036,0.00015040398,0.000027344537,0.00011793789,0.00036778292,0.00006681477,0.27861357,0.00018922363,0.002664213,0.00018653019],"about_ca_topic_score_codex":0.00070591335,"about_ca_topic_score_gemma":0.00008362685,"teacher_disagreement_score":0.6282029,"about_ca_system_score_codex":0.000075759395,"about_ca_system_score_gemma":0.000021746388,"threshold_uncertainty_score":0.45195782},"labels":[],"label_agreement":null},{"id":"W2048717354","doi":"10.1128/iai.01556-06","title":"Characterization of SodC, a Periplasmic Superoxide Dismutase from <i>Burkholderia cenocepacia</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canada Research Chairs; York University","keywords":"Periplasmic space; Burkholderia cenocepacia; Microbiology; Biology; Superoxide dismutase; Mutant; Biochemistry; Burkholderia cepacia complex; Superoxide; Phagosome; Burkholderia; Bacteria; Intracellular; Molecular biology; Virulence; Escherichia coli; Enzyme; Gene","score_opus":0.007607009626288544,"score_gpt":0.22237168235465093,"score_spread":0.2147646727283624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048717354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987008,0.000040293766,0.00055789255,0.00002067173,0.00027966802,0.00007511687,0.000058399095,0.0000127132935,0.00025446908],"genre_scores_gemma":[0.99886227,0.00020848296,0.0000814491,0.00011137542,0.00012430367,8.791371e-7,0.0005624064,0.00001005775,0.000038791877],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994817,0.000043929704,0.0001772518,0.0001325769,0.00004292263,0.00012163889],"domain_scores_gemma":[0.99965787,0.000008181247,0.00007699853,0.00015937153,0.000050284976,0.000047276004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015667726,0.00009568362,0.000106896216,0.000032825355,0.00009882168,0.000019905197,0.000029816481,0.000121317826,0.00003101918],"category_scores_gemma":[0.00003203471,0.00009469524,0.000038717266,0.0000587605,0.000068497364,0.000010288874,0.0000497613,0.00007121948,0.0000023095977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010748895,0.00004640134,0.0086935,0.0000068119934,0.000018349709,4.3261232e-7,0.00008498932,2.1362445e-7,0.9876171,0.000011172356,0.0000124685885,0.0034011134],"study_design_scores_gemma":[0.0002781601,0.00009799172,0.20175692,0.000009565769,0.000009765659,0.000007278558,0.000032228298,0.0000041194376,0.79121417,0.000004386522,0.006499152,0.000086233296],"about_ca_topic_score_codex":0.0008476776,"about_ca_topic_score_gemma":0.00025614043,"teacher_disagreement_score":0.19640286,"about_ca_system_score_codex":0.000006931817,"about_ca_system_score_gemma":0.000015432352,"threshold_uncertainty_score":0.386156},"labels":[],"label_agreement":null},{"id":"W2049442931","doi":"10.1128/iai.06338-11","title":"Chlamydia muridarum T Cell Antigens and Adjuvants That Induce Protective Immunity in Mice","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Antigen; Adjuvant; Biology; Chlamydia; T cell; Virology; Immunity; Microbiology; Immune system; Immunology","score_opus":0.03495184380280144,"score_gpt":0.29334361856737273,"score_spread":0.2583917747645713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049442931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900556,0.002868849,0.00007165933,0.0000643778,0.00067616696,0.00065649545,0.0000098658675,0.000078323385,0.0055186287],"genre_scores_gemma":[0.9984408,0.00097483746,0.00001534165,0.000031785334,0.00004266654,0.00007283336,0.000022836233,0.000019060308,0.00037982973],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99784863,0.0010686252,0.00023247702,0.00028064742,0.000048951297,0.0005206474],"domain_scores_gemma":[0.9991528,0.00021148597,0.00010924948,0.00035421364,0.00011703941,0.000055240558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012745745,0.00022190015,0.00027571004,0.00039717663,0.00059653947,0.000043818793,0.00009355167,0.0003241527,0.00025978603],"category_scores_gemma":[0.00032967117,0.00021208014,0.000047848196,0.0003842038,0.00041184606,0.00067151757,0.0002225786,0.0015096781,0.00018274017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010569131,0.00068289373,0.5098127,0.000041003877,0.000056362074,6.812255e-7,0.001990749,0.0000010450423,0.4765431,0.000054199867,0.00006217551,0.010649406],"study_design_scores_gemma":[0.0007666332,0.0001298378,0.7338054,0.000020039728,0.000011617914,0.00010554591,0.00046394244,0.0000013140186,0.26081535,0.000063751126,0.0036476434,0.00016886952],"about_ca_topic_score_codex":0.008710613,"about_ca_topic_score_gemma":0.00021706527,"teacher_disagreement_score":0.22399275,"about_ca_system_score_codex":0.00010363226,"about_ca_system_score_gemma":0.000053703145,"threshold_uncertainty_score":0.9978905},"labels":[],"label_agreement":null},{"id":"W2055903497","doi":"10.1128/iai.72.9.5126-5134.2004","title":"Contribution of <i>Burkholderia cenocepacia</i> Flagella to Infectivity and Inflammation","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; University of British Columbia; National Institutes of Health; Cystic Fibrosis Foundation","keywords":"Burkholderia cenocepacia; Biology; Microbiology; TLR5; Flagellin; Virulence; Immune system; Spleen; Wild type; Pathogen; Mutant; Innate immune system; Immunology; TLR2; Bacteria; Gene","score_opus":0.010957779872536823,"score_gpt":0.2943440239494406,"score_spread":0.28338624407690377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055903497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939258,0.00011239654,0.0045695445,0.00034520743,0.00006219409,0.00038456824,0.0000050648573,0.000041017804,0.0005541878],"genre_scores_gemma":[0.9993828,0.00021781746,0.00027724367,0.00004114333,0.000035057303,0.000011458608,0.000014554539,0.0000054942016,0.000014442788],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99941427,0.00006232448,0.00016114308,0.00010851257,0.00012974764,0.00012403657],"domain_scores_gemma":[0.99940854,0.000070622256,0.00005511244,0.00013153795,0.00022124671,0.0001129098],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031820431,0.000080544836,0.00017774891,0.00012774456,0.00011319502,0.000020120588,0.000014408812,0.000056325192,0.000017827704],"category_scores_gemma":[0.001011453,0.00007471201,0.000025121182,0.00022594981,0.00009942728,0.00017997086,0.000049384365,0.00014969723,0.000006488618],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002817202,0.000104555795,0.048848666,0.00012452704,0.000024463172,0.0000012021518,0.00029447296,0.0000479051,0.9325469,0.0006649797,0.000018106077,0.017042495],"study_design_scores_gemma":[0.0015626639,0.00064801815,0.64865184,0.00011115949,0.000018434705,0.000044674653,0.000026352884,0.000027537564,0.34547216,0.0009382913,0.0024321112,0.00006677139],"about_ca_topic_score_codex":0.0011885575,"about_ca_topic_score_gemma":0.00020638073,"teacher_disagreement_score":0.59980315,"about_ca_system_score_codex":0.00007934345,"about_ca_system_score_gemma":0.00004540548,"threshold_uncertainty_score":0.30466673},"labels":[],"label_agreement":null},{"id":"W2057162296","doi":"10.1128/iai.02251-14","title":"MicroRNA-155 Is Required for Clearance of Streptococcus pneumoniae from the Nasopharynx","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"","keywords":"Streptococcus pneumoniae; Biology; Immunology; Macrophage polarization; Effector; Microbiology; Pneumococcal infections; Bacterial pneumonia; Macrophage; In vitro","score_opus":0.02324656329413697,"score_gpt":0.28875381673108946,"score_spread":0.2655072534369525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057162296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609625,0.000117444906,0.0005552103,0.001316513,0.00029295156,0.0003956289,0.000037257443,0.000048717968,0.0011400487],"genre_scores_gemma":[0.99810153,0.0001331777,0.000016546042,0.0013443402,0.00014275327,0.000038227765,0.000011849289,0.000011670026,0.00019990097],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993636,0.00009931077,0.00021395339,0.0001301172,0.0000736915,0.00011932887],"domain_scores_gemma":[0.9991848,0.00021127811,0.00010835043,0.00031710492,0.00012386934,0.00005461999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022796835,0.00010296664,0.00019893903,0.000043019096,0.00029638142,0.00001687462,0.000048610167,0.000089110734,0.000059835635],"category_scores_gemma":[0.00017524709,0.000071774906,0.000113929,0.00012344385,0.00014253869,0.00007594648,0.000028307417,0.00019922211,0.00001667022],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011324355,0.00023117517,0.31263745,0.0000815286,0.00013902523,4.0286272e-7,0.0006611864,0.0000036708361,0.6614173,0.00024219441,0.001654889,0.022817954],"study_design_scores_gemma":[0.0012773024,0.00045717784,0.806287,0.000080743215,0.00008732081,0.000013137064,0.000048126793,0.00018608749,0.031131482,0.0003830407,0.15996005,0.000088513654],"about_ca_topic_score_codex":0.00040379123,"about_ca_topic_score_gemma":0.000057507532,"teacher_disagreement_score":0.6302858,"about_ca_system_score_codex":0.000017733464,"about_ca_system_score_gemma":0.000031808268,"threshold_uncertainty_score":0.29268956},"labels":[],"label_agreement":null},{"id":"W2057206099","doi":"10.1128/iai.02045-14","title":"Intestinal Epithelium-Specific MyD88 Signaling Impacts Host Susceptibility to Infectious Colitis by Promoting Protective Goblet Cell and Antimicrobial Responses","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Goblet cell; Intestinal epithelium; Antimicrobial; Microbiology; Epithelium; Colitis; Immunology; Genetics","score_opus":0.01745417679651888,"score_gpt":0.27787155637678485,"score_spread":0.26041737958026595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057206099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663764,0.00010264378,0.0005082533,0.00046237488,0.00010413129,0.0012024291,0.000037383805,0.00014516726,0.0007999612],"genre_scores_gemma":[0.9991617,0.00019039404,0.00007614889,0.00018231262,0.0001625262,0.00004514862,0.00002202919,0.000032872857,0.00012683823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99771404,0.00072178943,0.00039801217,0.0004589463,0.00023230523,0.00047487486],"domain_scores_gemma":[0.99829006,0.00047696647,0.00012057365,0.0003383366,0.00037609882,0.00039794398],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017399738,0.00027626153,0.00039191655,0.00026255386,0.0005812368,0.00017109532,0.000062725216,0.0001641189,0.000087130684],"category_scores_gemma":[0.0018861479,0.00026234126,0.000078487814,0.00045196718,0.0002293879,0.00014235773,0.00017695976,0.0008478576,0.000031376083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009294419,0.00039928316,0.037068266,0.00028370466,0.000023986664,0.000004962084,0.0007933829,0.0000017453834,0.9531266,0.000007136131,0.0004395077,0.0069219447],"study_design_scores_gemma":[0.001771114,0.0029779514,0.14291793,0.00029750876,0.000035653084,0.00031678,0.0001724285,0.00015353865,0.8484579,0.000023265486,0.002588076,0.00028788243],"about_ca_topic_score_codex":0.0034482207,"about_ca_topic_score_gemma":0.00017498617,"teacher_disagreement_score":0.10584967,"about_ca_system_score_codex":0.00023754513,"about_ca_system_score_gemma":0.00011888016,"threshold_uncertainty_score":0.9999829},"labels":[],"label_agreement":null},{"id":"W2057459453","doi":"10.1128/iai.70.12.6541-6548.2002","title":"Induction of Keratinocyte Growth Factor 1 Expression by Lipopolysaccharide Is Regulated by CD-14 and Toll-Like Receptors 2 and 4","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Keratinocyte growth factor; Keratinocyte; CD14; Porphyromonas gingivalis; Lipopolysaccharide; Receptor; Signal transduction; Cell biology; Toll-like receptor; Growth factor; Molecular biology; Immunology; Innate immune system; Cell culture; Biochemistry","score_opus":0.012161134807354966,"score_gpt":0.21840959840374063,"score_spread":0.20624846359638566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057459453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945606,0.004370614,0.000058828606,0.0001545328,0.0004722224,0.0001598144,0.000016689148,0.00005223545,0.00015444594],"genre_scores_gemma":[0.9917718,0.0055202716,0.000010099541,0.0000724268,0.00001009154,0.000008275195,0.00007469728,0.000010442188,0.0025218998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900997,0.0003219928,0.0002959448,0.00018598477,0.000034985966,0.00015111355],"domain_scores_gemma":[0.99949855,0.00006836976,0.00017558706,0.0001521801,0.000080143414,0.000025166959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016368376,0.00016083718,0.00021724918,0.000121394514,0.0003596245,0.000029121431,0.000038459377,0.00031115997,0.0006099057],"category_scores_gemma":[0.00007645591,0.00014543647,0.000031268723,0.00009126809,0.00019732903,0.000376851,0.000060084985,0.0002941783,0.000015252938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012304843,0.00006430343,0.0034000494,0.00002456212,0.000048444457,7.687384e-8,0.0010677908,5.1948263e-8,0.9639188,0.00001428087,0.014628461,0.016710117],"study_design_scores_gemma":[0.0010582469,0.00027069557,0.013459307,0.000046332723,0.000022609554,0.000048355665,0.00015233058,0.00001580502,0.9589524,0.000030041132,0.025781507,0.00016233086],"about_ca_topic_score_codex":0.00077995367,"about_ca_topic_score_gemma":0.0000064535698,"teacher_disagreement_score":0.016547786,"about_ca_system_score_codex":0.00002057781,"about_ca_system_score_gemma":0.000006335623,"threshold_uncertainty_score":0.667804},"labels":[],"label_agreement":null},{"id":"W2057783048","doi":"10.1128/iai.69.11.7152-7158.2001","title":"Inhibition of Attaching and Effacing Lesion Formation following Enteropathogenic <i>Escherichia coli</i> and Shiga Toxin-Producing <i>E. coli</i> Infection","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Biology; Enteropathogenic Escherichia coli; Microbiology; Wortmannin; Shiga toxin; Escherichia coli; LY294002; Phospholipase C; Bacterial adhesin; Signal transduction; Phosphatidylinositol; Cell biology; Biochemistry","score_opus":0.019347542153627918,"score_gpt":0.281771496923522,"score_spread":0.26242395476989405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057783048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949606,0.0008304638,0.0034181466,0.000047164496,0.000115752046,0.0002706835,0.0000030934073,0.00002581286,0.00032825282],"genre_scores_gemma":[0.99430346,0.005292462,0.00014125949,0.000110066045,0.00005774443,0.000022773069,0.000031547104,0.000013173012,0.000027500852],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989983,0.00023201574,0.00025199604,0.00022907593,0.00011241886,0.00017621765],"domain_scores_gemma":[0.99955153,0.000028934626,0.00012280612,0.00015015659,0.00008500801,0.00006157433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066208857,0.00014932256,0.0001707569,0.00008995022,0.00045811324,0.000056483048,0.000023014178,0.00010578255,0.0000017523989],"category_scores_gemma":[0.00021515472,0.00015250736,0.00005516159,0.00016504283,0.00007932716,0.00007140301,0.00017659829,0.00019074639,4.7172475e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007238538,0.00004442684,0.11532591,0.00010450636,0.00003091994,7.1537096e-7,0.00033888733,0.00001735127,0.87987244,0.000008934887,0.000016489877,0.0041670096],"study_design_scores_gemma":[0.001608097,0.0007886237,0.6016903,0.00023762598,0.00006690865,0.000067862304,0.00027443506,0.00076080015,0.39160958,0.000075638454,0.0025013818,0.00031879306],"about_ca_topic_score_codex":0.00071029173,"about_ca_topic_score_gemma":0.00036973282,"teacher_disagreement_score":0.4882629,"about_ca_system_score_codex":0.000027262618,"about_ca_system_score_gemma":0.000018472329,"threshold_uncertainty_score":0.62190694},"labels":[],"label_agreement":null},{"id":"W2059311311","doi":"10.1128/iai.69.8.4988-4995.2001","title":"Reciprocal, Temporal Expression of SpeA and SpeB by Invasive M1T1 Group A Streptococcal Isolates In Vivo","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs; U.S. Department of Defense","keywords":"Biology; In vivo; Microbiology; In vitro; Virulence; Streptococcus; Pathogenesis; Bacteria; Gene; Immunology; Genetics","score_opus":0.018655880068921833,"score_gpt":0.2827273096561649,"score_spread":0.26407142958724306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059311311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968495,0.00022189309,0.00009169844,0.000044458113,0.0000624317,0.000456654,0.000008343024,0.000033708475,0.002231348],"genre_scores_gemma":[0.99852383,0.0010607637,0.00008540524,0.00003891997,0.000023495068,0.00003795703,0.000023735387,0.000009454459,0.00019642862],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993082,0.00007452719,0.00024670755,0.00017223577,0.000064874665,0.0001334517],"domain_scores_gemma":[0.99954146,0.000077393175,0.00008404388,0.00015880834,0.000047023368,0.00009124167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110792185,0.00013425514,0.00023954599,0.00014632866,0.00010245309,0.00001739865,0.000017366145,0.0001102538,0.00028566006],"category_scores_gemma":[0.00008264628,0.000110573084,0.00004415484,0.00022642803,0.00011343443,0.00016409715,0.000047086265,0.00020578162,0.0000033556362],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017060447,0.00064469356,0.8943599,0.00003984279,0.000023659197,0.0000052874925,0.00014350792,4.085279e-7,0.09982927,0.0000097597085,0.0002594721,0.0045135794],"study_design_scores_gemma":[0.003914059,0.0015341862,0.89915234,0.00037361917,0.000048155878,0.00015480311,0.00028644706,0.00006655716,0.0895079,0.00018259803,0.0046191597,0.00016020407],"about_ca_topic_score_codex":0.004691178,"about_ca_topic_score_gemma":0.0005060233,"teacher_disagreement_score":0.010321372,"about_ca_system_score_codex":0.000044780205,"about_ca_system_score_gemma":0.00001967213,"threshold_uncertainty_score":0.709169},"labels":[],"label_agreement":null},{"id":"W2060646786","doi":"10.1128/iai.00628-09","title":"<i>Cryptococcus gattii</i>Isolates from the British Columbia Cryptococcosis Outbreak Induce Less Protective Inflammation in a Murine Model of Infection than<i>Cryptococcus neoformans</i>","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"British Columbia Lung Association; University of British Columbia; Burroughs Wellcome Fund","keywords":"Cryptococcus gattii; Cryptococcosis; Cryptococcus neoformans; Biology; Outbreak; Microbiology; Virulence; Virology; Immune system; Pathogen; Cryptococcus; Genotype; Immunology; Gene","score_opus":0.02266077702662672,"score_gpt":0.25259123536510886,"score_spread":0.22993045833848214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060646786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99345857,0.00015352144,0.001596109,0.00033773706,0.00017780653,0.0022826358,0.00003511457,0.00013380685,0.0018247145],"genre_scores_gemma":[0.9981845,0.0007876719,0.00011983592,0.00021402206,0.00012664201,0.00040670572,0.00003953825,0.000020045549,0.000101039135],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99832,0.00021099145,0.00063299504,0.00030640973,0.00021758072,0.0003120298],"domain_scores_gemma":[0.9986978,0.00014922477,0.00028449492,0.000364779,0.00041588632,0.00008779261],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00054036675,0.00023904661,0.00050701847,0.00014905987,0.00088913325,0.0003231499,0.000070277485,0.00024388696,0.0000416195],"category_scores_gemma":[0.00028442426,0.00025148568,0.0001617657,0.0007339276,0.0001834421,0.00052997493,0.00009755865,0.00079987134,0.0000061388723],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031788988,0.00090501603,0.88210887,0.0001350576,0.00019845803,0.0000030850188,0.0021306449,0.00080323435,0.052571807,0.00007688565,0.0005989109,0.060150158],"study_design_scores_gemma":[0.0022206367,0.00075818086,0.98335,0.00046751613,0.00010643764,0.000034941524,0.00023359008,0.0040357113,0.005317099,0.0026565809,0.00056552293,0.0002537921],"about_ca_topic_score_codex":0.22533746,"about_ca_topic_score_gemma":0.11602885,"teacher_disagreement_score":0.10930861,"about_ca_system_score_codex":0.00017121168,"about_ca_system_score_gemma":0.000095925054,"threshold_uncertainty_score":0.99999374},"labels":[],"label_agreement":null},{"id":"W2061396221","doi":"10.1128/iai.00534-13","title":"Protein Kinase C Mediates Enterohemorrhagic Escherichia coli O157:H7-Induced Attaching and Effacing Lesions","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Protein kinase C; Lipid raft; Escherichia coli; Microbiology; Intimin; Secretion; MARCKS; Shiga toxin; Cell biology; Signal transduction; Enterobacteriaceae; Biochemistry; Gene","score_opus":0.01715005323438419,"score_gpt":0.2816703803566545,"score_spread":0.2645203271222703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061396221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997703,0.0003158989,0.0005413891,0.00013517214,0.00008359337,0.00023847353,0.000002432609,0.000029728668,0.00095027423],"genre_scores_gemma":[0.9990221,0.00032157506,0.00022931347,0.000119567485,0.00009229806,0.000051926447,0.000015901362,0.000013633813,0.0001336789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990452,0.00030218717,0.00014037573,0.00021509273,0.00008799755,0.00020915254],"domain_scores_gemma":[0.9995256,0.000040203995,0.000057857862,0.0002031279,0.00007314717,0.00010008167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045812616,0.00014591166,0.00014207973,0.000047948488,0.00046302262,0.000060679493,0.00005955334,0.00010198923,0.0000078076955],"category_scores_gemma":[0.00067526265,0.00013215093,0.00003686983,0.00008825511,0.00009841522,0.000011774033,0.00026864168,0.00026260584,0.000003559811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029370382,0.000053290663,0.018190823,0.000049850172,0.00003202715,4.520427e-7,0.00010164984,0.0000020523676,0.97471136,0.0000436729,0.000037595044,0.006747827],"study_design_scores_gemma":[0.0018543075,0.0013244781,0.4090398,0.000109287925,0.000038577662,0.000018057806,0.00029019034,0.001434857,0.5708261,0.00016496512,0.014369659,0.0005296907],"about_ca_topic_score_codex":0.0006203126,"about_ca_topic_score_gemma":0.0002236061,"teacher_disagreement_score":0.40388525,"about_ca_system_score_codex":0.0000133075955,"about_ca_system_score_gemma":0.000024099263,"threshold_uncertainty_score":0.53889585},"labels":[],"label_agreement":null},{"id":"W2064642543","doi":"10.1128/iai.72.10.5654-5661.2004","title":"Immunization with<i>Leishmania major</i>Exogenous Antigens Protects Susceptible BALB/c Mice against Challenge Infection with<i>L. major</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research and Materiel Command; National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health; McMaster University","keywords":"Lipophosphoglycan; Biology; Antigen; Leishmania major; BALB/c; Adjuvant; Splenocyte; Leishmania; Immunization; Microbiology; Antibody; Western blot; Immunology; Molecular biology; Immune system; Leishmania donovani; Leishmaniasis; Visceral leishmaniasis; Biochemistry","score_opus":0.01854711347208932,"score_gpt":0.261007691760148,"score_spread":0.24246057828805867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064642543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852122,0.0005777374,0.0015531253,0.0010671733,0.00012969221,0.001775994,0.0000062639215,0.00039266917,0.009285133],"genre_scores_gemma":[0.99439204,0.0040598037,0.0004917938,0.00029333908,0.00013720621,0.00016878618,0.00007403047,0.00007850621,0.00030451978],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99785805,0.00023979685,0.00037182562,0.0004561932,0.00050119386,0.0005729347],"domain_scores_gemma":[0.99823153,0.00005319028,0.00020601439,0.00057588395,0.0007127917,0.00022059077],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005448847,0.00041412318,0.0005012047,0.00041500878,0.0011308664,0.00013538492,0.00009155557,0.00020309072,0.000056420133],"category_scores_gemma":[0.0001593661,0.00033398558,0.00008755315,0.0009438107,0.0003648244,0.0005851491,0.00013330145,0.0008810096,0.00007195544],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045379833,0.0065944954,0.48326412,0.003037054,0.002638013,0.00036103834,0.008933852,0.0008487642,0.46597636,0.0012804372,0.0004865279,0.022041347],"study_design_scores_gemma":[0.014046568,0.011554719,0.85670036,0.0012073048,0.000358159,0.0012374915,0.00079623656,0.00007784348,0.10250549,0.00024757333,0.010212644,0.0010556115],"about_ca_topic_score_codex":0.009010204,"about_ca_topic_score_gemma":0.005255888,"teacher_disagreement_score":0.37343624,"about_ca_system_score_codex":0.00037599582,"about_ca_system_score_gemma":0.00024616774,"threshold_uncertainty_score":0.9999112},"labels":[],"label_agreement":null},{"id":"W2069681232","doi":"10.1128/iai.70.4.1997-2009.2002","title":"Host Immune Response to<i>Salmonella enterica</i>Serovar Typhimurium Infection in Mice Derived from Wild Strains","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre hospitalier de l'Université Laval; Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Spleen; Salmonella enterica; Microbiology; Lipopolysaccharide; Salmonella; Tumor necrosis factor alpha; Immune system; Cytokine; Enterobacteriaceae; Mononuclear phagocyte system; Immunology; Bacteria; Gene; Escherichia coli","score_opus":0.014784306629117464,"score_gpt":0.23270688332278577,"score_spread":0.21792257669366832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069681232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960402,0.0010134627,0.00026858607,0.0005255906,0.00084265275,0.00036411334,0.00001526249,0.0001418134,0.00078828644],"genre_scores_gemma":[0.9973674,0.0013086121,0.00003444921,0.00025161877,0.000033298955,0.000040504077,0.000083358645,0.000022960025,0.00085780805],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99756604,0.0012334383,0.00050417933,0.0002981749,0.000047469886,0.00035071708],"domain_scores_gemma":[0.9991179,0.00024431493,0.00015881148,0.00035264064,0.000086678774,0.00003966517],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00063299586,0.00025856897,0.00032944613,0.0004211474,0.000360968,0.000053978525,0.000110920664,0.0003290439,0.0009190642],"category_scores_gemma":[0.00036900758,0.00026949437,0.00009715052,0.0004317756,0.00013117999,0.00034811336,0.00012209924,0.0005843597,0.000948657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012655996,0.00025380016,0.011398709,0.00000934352,0.00007414434,0.0000035376536,0.0017947567,0.000013088836,0.97992826,0.000011939446,0.00024402798,0.0050027855],"study_design_scores_gemma":[0.001616171,0.00038493876,0.74823153,0.00006351479,0.00002233059,0.00004392314,0.00011343478,0.000037676036,0.23280525,0.00001960942,0.01641253,0.00024911665],"about_ca_topic_score_codex":0.008998841,"about_ca_topic_score_gemma":0.00037933752,"teacher_disagreement_score":0.747123,"about_ca_system_score_codex":0.00012467035,"about_ca_system_score_gemma":0.000024089819,"threshold_uncertainty_score":0.9999942},"labels":[],"label_agreement":null},{"id":"W2070186759","doi":"10.1128/iai.06348-11","title":"Neutralizing Antibodies Elicited by a Novel Detoxified Pneumolysin Derivative, PlyD1, Provide Protection against Both Pneumococcal Infection and Lung Injury","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Pneumolysin; Immunogenicity; Immunology; Antibody; Biology; Streptococcus pneumoniae; Neutralizing antibody; Pneumonia; Virology; Microbiology; Medicine; Antibiotics; Internal medicine","score_opus":0.027048498603710197,"score_gpt":0.29559182765022557,"score_spread":0.26854332904651534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070186759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99432504,0.0002042288,0.002447684,0.00030980766,0.0005185035,0.0010222399,0.000014821488,0.0003457092,0.0008119833],"genre_scores_gemma":[0.99821216,0.0007146159,0.000033533845,0.00049848034,0.00018885032,0.00014720435,0.00004099428,0.000039158822,0.00012499836],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984492,0.00022062783,0.00042752692,0.00029548325,0.00017248615,0.00043467258],"domain_scores_gemma":[0.9990689,0.000060485334,0.00021116112,0.00024632784,0.00014563015,0.00026745675],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044321807,0.00033463168,0.00038451815,0.00040581133,0.0009416624,0.00010472957,0.000030502571,0.00028132572,0.000014992216],"category_scores_gemma":[0.0002370754,0.00030366474,0.00010571966,0.00055947003,0.00021740663,0.000844269,0.000079740734,0.00076534506,0.0000073219985],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006927881,0.00041155008,0.27684346,0.00015150224,0.00009762034,5.308963e-7,0.0003932141,0.0000038399958,0.71656036,0.000035422876,0.00009095782,0.005342267],"study_design_scores_gemma":[0.0012571559,0.00048287687,0.89036757,0.0001821081,0.00017078892,0.00025930133,0.000102345344,0.0006380899,0.088779345,0.000012366243,0.017381059,0.00036699092],"about_ca_topic_score_codex":0.0013979472,"about_ca_topic_score_gemma":0.00008926705,"teacher_disagreement_score":0.627781,"about_ca_system_score_codex":0.00016730426,"about_ca_system_score_gemma":0.000060435606,"threshold_uncertainty_score":0.9999415},"labels":[],"label_agreement":null},{"id":"W2071847689","doi":"10.1128/iai.68.6.3172-3179.2000","title":"Characterization of Binding of <i>Candida albicans</i> to Small Intestinal Mucin and Its Role in Adherence to Mucosal Epithelial Cells","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Mucin; Candida albicans; Biology; Microbiology; Mucin 2; Epithelium; Intestinal mucosa; Immunology; Biochemistry; Internal medicine; Medicine","score_opus":0.017152533705599875,"score_gpt":0.26224786933685895,"score_spread":0.24509533563125907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071847689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990755,0.000013982175,0.000070905764,0.000032514585,0.00003363722,0.00025302958,0.000018599525,0.000009649436,0.0004922024],"genre_scores_gemma":[0.9994548,0.000114800874,0.00005458172,0.000077573466,0.000014193477,0.000005559291,0.000009048769,0.0000046260943,0.00026481933],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994441,0.000045417968,0.00022669579,0.00011851618,0.000068815476,0.00009643882],"domain_scores_gemma":[0.99966574,0.000036261124,0.000047446385,0.00009855651,0.00007467649,0.00007731702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002042671,0.000072918236,0.00019100934,0.00010448015,0.000036401758,0.000005959163,0.000024297939,0.000043732565,0.00017029184],"category_scores_gemma":[0.00010362378,0.000068488145,0.00002055106,0.00024138944,0.00003265666,0.00006210297,0.000021247239,0.000117438605,0.000006896616],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003742422,0.00009607466,0.18021606,0.0000697736,0.0000035245366,5.4374465e-7,0.0005592596,0.0000016601558,0.7996572,0.000009357477,0.0000010834498,0.019011175],"study_design_scores_gemma":[0.00036049323,0.00057783455,0.64758116,0.00014422792,0.000008624087,0.0000037224072,0.00006404586,0.000047800455,0.35098737,0.000006892194,0.0001714916,0.000046358007],"about_ca_topic_score_codex":0.0017689657,"about_ca_topic_score_gemma":0.0008539009,"teacher_disagreement_score":0.4673651,"about_ca_system_score_codex":0.00001857219,"about_ca_system_score_gemma":0.000035523804,"threshold_uncertainty_score":0.27928653},"labels":[],"label_agreement":null},{"id":"W2073228865","doi":"10.1128/iai.68.6.3523-3534.2000","title":"Genetic Relatedness and Superantigen Expression in Group A Streptococcus Serotype M1 Isolates from Patients with Severe and Nonsevere Invasive Diseases","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":275,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Serotype; Superantigen; Biology; Microbiology; Streptococcus pyogenes; Streptococcus; Group A; Virology; Immunology; Genetics; Bacteria; Medicine; Internal medicine; Staphylococcus aureus","score_opus":0.006770676779548202,"score_gpt":0.2204300237715661,"score_spread":0.21365934699201788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073228865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985653,0.0004406926,0.000006393573,0.0000147764995,0.00003159709,0.0006550236,0.00004052986,0.000041423107,0.00020424988],"genre_scores_gemma":[0.99857,0.0010882617,0.000058666108,0.000042971395,0.000013714281,0.000058987374,0.00009874568,0.000013411754,0.00005520499],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993336,0.00008428297,0.00015519827,0.00023222734,0.000064397485,0.00013026428],"domain_scores_gemma":[0.99955755,0.000080559636,0.000035763507,0.00015911332,0.00004634076,0.00012065051],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000022122755,0.00016459037,0.00020536873,0.0000868028,0.00020451602,0.0000392238,0.0000148744775,0.00009874184,0.00040946],"category_scores_gemma":[0.00002304475,0.0001233881,0.000021583763,0.00014616996,0.000088524386,0.00019925433,0.000030372683,0.00017654223,0.0000065997],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003877173,0.00046285495,0.98025787,0.000030316203,0.00006304022,0.0000071704253,0.0003263493,0.000005626828,0.0004145518,6.002677e-7,0.0000099229155,0.01803396],"study_design_scores_gemma":[0.0045207115,0.0006089371,0.9937245,0.00031937077,0.0000964314,0.000021824519,0.00007472259,0.000050004805,0.00024970085,0.00007214299,0.000121470686,0.00014013509],"about_ca_topic_score_codex":0.0043057594,"about_ca_topic_score_gemma":0.0006052907,"teacher_disagreement_score":0.017893827,"about_ca_system_score_codex":0.00003181319,"about_ca_system_score_gemma":0.00002187114,"threshold_uncertainty_score":0.6509049},"labels":[],"label_agreement":null},{"id":"W2073342122","doi":"10.1128/iai.73.5.2586-2594.2005","title":"Modulation of Host Cytoskeleton Function by the Enteropathogenic <i>Escherichia coli</i> and <i>Citrobacter rodentium</i> Effector Protein EspG","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; Michael Smith Health Research BC; Genome Canada","keywords":"Citrobacter rodentium; Biology; Shigella flexneri; Enteropathogenic Escherichia coli; Effector; Microbiology; Cell biology; Virulence; Actin; Cytoskeleton; Type three secretion system; Actin cytoskeleton; Escherichia coli; Genetics; Pathogen","score_opus":0.006019935714545886,"score_gpt":0.22991593478794284,"score_spread":0.22389599907339694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073342122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99697655,0.00083228364,0.0014034203,0.00013064836,0.000057488916,0.00039783973,0.000020471938,0.000013075202,0.0001681998],"genre_scores_gemma":[0.99871564,0.00058489246,0.00004989108,0.00014817504,0.000084922984,0.00006540598,0.00003835346,0.000011317827,0.00030142066],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918926,0.00025955326,0.00015182875,0.00016493701,0.00009745569,0.00013694503],"domain_scores_gemma":[0.9995762,0.000017951643,0.000083542414,0.00019305947,0.00009026455,0.000038947735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003223687,0.00012041007,0.00011071695,0.00002521179,0.00020648712,0.000027148522,0.0000513547,0.00008437278,0.000008048829],"category_scores_gemma":[0.000079813275,0.000093888506,0.000045987028,0.000092582806,0.0001331838,0.000017631835,0.000121897494,0.0001554653,0.000002273496],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013652287,0.00007295822,0.01307254,0.000034161378,0.000050849747,3.5710098e-8,0.000037678048,0.0000055823807,0.98222196,0.0000072328758,0.00037451307,0.0039859484],"study_design_scores_gemma":[0.0010207738,0.0008303222,0.49987766,0.00002397504,0.00003621568,0.0000060150287,0.000031287138,0.0003538961,0.44508812,0.000012471471,0.05254135,0.00017793676],"about_ca_topic_score_codex":0.00022598839,"about_ca_topic_score_gemma":0.00016327093,"teacher_disagreement_score":0.5371339,"about_ca_system_score_codex":0.000015122594,"about_ca_system_score_gemma":0.000016151353,"threshold_uncertainty_score":0.38286623},"labels":[],"label_agreement":null},{"id":"W2075469643","doi":"10.1128/iai.06066-11","title":"Campylobacter jejuni Disrupts Protective Toll-Like Receptor 9 Signaling in Colonic Epithelial Cells and Increases the Severity of Dextran Sulfate Sodium-Induced Colitis in Mice","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Campylobacter jejuni; Biology; Colitis; Immunology; Microbiology; Interleukin 22; TLR9; Immune system; Inflammatory bowel disease; Inflammation; Cytokine; Interleukin; Internal medicine; Medicine","score_opus":0.01721318390417257,"score_gpt":0.2584135935363745,"score_spread":0.24120040963220193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075469643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846977,0.00014821759,0.000006795906,0.00023472677,0.00022945301,0.0008126142,0.000020726502,0.000020716378,0.00005700856],"genre_scores_gemma":[0.9993869,0.00031270212,0.000018143433,0.0001232696,0.000053623182,0.000074110605,0.0000072092503,0.000011817043,0.0000122217125],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99811524,0.00093111634,0.00033415266,0.00016241112,0.00010497863,0.00035209596],"domain_scores_gemma":[0.99924034,0.00027571627,0.000111926754,0.00015165862,0.00013434186,0.000085990534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010943762,0.0001620033,0.00034551724,0.00018597725,0.0001864099,0.000012454022,0.000043810083,0.00016126804,0.000021353702],"category_scores_gemma":[0.00024141489,0.00012757977,0.00003755396,0.00030441314,0.00029112166,0.00019407476,0.00009757985,0.00077049586,0.000004598386],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00095391396,0.00069491565,0.82231313,0.000082082406,0.00010564507,0.0000028829904,0.0057034222,9.0677685e-7,0.16861235,0.000008075632,0.00001263503,0.001510078],"study_design_scores_gemma":[0.0020066742,0.0005863762,0.95150435,0.00014313006,0.000050576782,0.000063366024,0.00083161733,0.000011677938,0.0444282,0.000024228928,0.0002597839,0.00009000658],"about_ca_topic_score_codex":0.015657447,"about_ca_topic_score_gemma":0.0047805132,"teacher_disagreement_score":0.12919126,"about_ca_system_score_codex":0.00013953222,"about_ca_system_score_gemma":0.000043259046,"threshold_uncertainty_score":0.99089736},"labels":[],"label_agreement":null},{"id":"W2075584350","doi":"10.1128/iai.73.8.4571-4580.2005","title":"Virulence of the Fungal Pathogen <i>Candida albicans</i> Requires the Five Isoforms of Protein Mannosyltransferases","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Virulence; Candida albicans; Biology; Mutant; Microbiology; Corpus albicans; Gene isoform; Phenotype; Fungal protein; Virulence factor; Gene; Pathogen; Genetics","score_opus":0.009694942676982536,"score_gpt":0.24758246704093018,"score_spread":0.23788752436394764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075584350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99635816,0.0003199719,0.000111325375,0.00050895085,0.000041863183,0.0004093667,0.00002798771,0.000013161235,0.002209207],"genre_scores_gemma":[0.998935,0.00026541256,0.000020275933,0.000197308,0.000033413224,0.000012237298,0.0000028124618,0.000004890198,0.0005286889],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926794,0.0001182935,0.00024602065,0.00009510468,0.00016402318,0.00010861425],"domain_scores_gemma":[0.99935895,0.00006890476,0.0000869413,0.0003412207,0.00011347807,0.000030492301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003468601,0.00008644612,0.00017124997,0.000023845174,0.00018776214,0.000006426839,0.000075563614,0.000053923854,0.00009791569],"category_scores_gemma":[0.00016553502,0.000044014578,0.00010294494,0.0001278064,0.00038546036,0.00010426714,0.00003338821,0.00022131091,0.0000018665158],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059456896,0.0003809988,0.46645454,0.000272363,0.00006756023,7.678497e-7,0.0013429027,0.000008437178,0.5026983,0.0010055349,0.000118608645,0.02705545],"study_design_scores_gemma":[0.00044687116,0.00027123556,0.85994494,0.00016450498,0.0000454463,0.000012243409,0.00033431736,0.000029574281,0.13591383,0.0001572419,0.0026239662,0.00005585126],"about_ca_topic_score_codex":0.0015315826,"about_ca_topic_score_gemma":0.0008247568,"teacher_disagreement_score":0.3934904,"about_ca_system_score_codex":0.000023463808,"about_ca_system_score_gemma":0.00006819122,"threshold_uncertainty_score":0.23153049},"labels":[],"label_agreement":null},{"id":"W2077651352","doi":"10.1128/iai.00319-08","title":"Antibiotic-Induced Perturbations of the Intestinal Microbiota Alter Host Susceptibility to Enteric Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":491,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Vancouver Coastal Health Research Institute; Michael Smith Health Research BC","keywords":"Biology; Salmonella enterica; Microbiology; Salmonella; Antibiotics; Gut flora; Colonisation resistance; Serotype; Bacteria; Immunology","score_opus":0.02026411411328796,"score_gpt":0.2703880879575182,"score_spread":0.25012397384423024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077651352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99866766,0.00002716495,0.00034270337,0.0001654031,0.00028003112,0.00022029282,0.000008838566,0.000011089804,0.00027681788],"genre_scores_gemma":[0.99925035,0.00012684445,0.00006866088,0.00029733006,0.000051649156,0.0000023985774,0.00001994186,0.000007338366,0.00017549716],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99932843,0.00016101514,0.00018047683,0.00016329138,0.000040092385,0.0001266762],"domain_scores_gemma":[0.999434,0.000011676715,0.000077109,0.000297349,0.00012970102,0.000050172788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017097568,0.0001003357,0.00010110003,0.000047918995,0.00032366056,0.000010413501,0.00006136597,0.0000879805,0.000020530293],"category_scores_gemma":[0.00015633627,0.00007991244,0.000069101356,0.00016756295,0.00010184052,0.000006393581,0.00012306632,0.00014456132,0.000006626942],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019197425,0.000097393764,0.21752566,0.000018576944,0.0000087296285,6.1064895e-8,0.00012241352,0.0000016959576,0.7816013,0.000004988587,0.00032597335,0.00027401967],"study_design_scores_gemma":[0.00016476575,0.00024761222,0.738551,0.00001704318,0.000006514928,0.00007342035,0.000011093208,0.00000443409,0.25883585,0.0000018745187,0.0020215288,0.000064850974],"about_ca_topic_score_codex":0.002362642,"about_ca_topic_score_gemma":0.00073533104,"teacher_disagreement_score":0.52276546,"about_ca_system_score_codex":0.000025093164,"about_ca_system_score_gemma":0.00006734885,"threshold_uncertainty_score":0.3571624},"labels":[],"label_agreement":null},{"id":"W2078795466","doi":"10.1128/iai.72.3.1423-1430.2004","title":"The <i>Klebsiella pneumoniae</i> O Antigen Contributes to Bacteremia and Lethality during Murine Pneumonia","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; American Lung Association","keywords":"Microbiology; Biology; Antigen; Bacteremia; Klebsiella pneumoniae; Mutant; Klebsiella pneumonia; Pneumonia; Streptococcus pneumoniae; Immunology; Virology; Bacteria; Escherichia coli; Gene; Staphylococcus aureus; Medicine; Antibiotics","score_opus":0.005269002167816434,"score_gpt":0.23442762080217933,"score_spread":0.2291586186343629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078795466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980494,0.00040777645,0.00024063612,0.00054934603,0.0001827143,0.00017808554,0.0000076003093,0.000019208592,0.0003652584],"genre_scores_gemma":[0.9973687,0.002161707,0.000039514623,0.00015049517,0.000060395785,0.0000049924347,0.00001197903,0.000011219762,0.00019102238],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99928916,0.00007993936,0.00017460389,0.00020357629,0.000053964945,0.00019877392],"domain_scores_gemma":[0.9994866,0.000021024758,0.00005791238,0.00029668707,0.00006673896,0.000070983624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025185442,0.00013147011,0.000117888565,0.000022965762,0.00049845,0.00010718481,0.00008106131,0.00010025979,0.0000027218089],"category_scores_gemma":[0.00013124396,0.00010498796,0.000034589713,0.00007721866,0.00015379014,0.00000807345,0.00016952689,0.00013006698,0.0000048772363],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006264405,0.000022026692,0.21695663,0.000014105415,0.000028775316,8.311764e-7,0.000028582443,0.00000419919,0.78214604,0.00008563022,0.000023691011,0.00062684214],"study_design_scores_gemma":[0.00038762434,0.00007964647,0.7792547,0.000021528707,0.000006439862,0.000035289988,0.000030439003,4.7563006e-7,0.20583522,0.00013629743,0.014106264,0.00010609679],"about_ca_topic_score_codex":0.00037527274,"about_ca_topic_score_gemma":0.00039703897,"teacher_disagreement_score":0.5763108,"about_ca_system_score_codex":0.000024343375,"about_ca_system_score_gemma":0.00002710968,"threshold_uncertainty_score":0.42812848},"labels":[],"label_agreement":null},{"id":"W2079119745","doi":"10.1128/iai.01242-15","title":"Acknowledgment of <i>Ad Hoc</i> Reviewers","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pediatric health and respiratory diseases","field":"Health Professions","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Period (music); Post hoc; Library science; Medicine; Computer science; Art; Internal medicine","score_opus":0.12364753799479504,"score_gpt":0.4440249718713003,"score_spread":0.32037743387650525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079119745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726558,0.010949318,0.00004236292,0.00012944893,0.0007169565,0.0003264206,0.000009554745,0.000047733214,0.015122443],"genre_scores_gemma":[0.9839067,0.0129084475,0.000043988297,0.0020162638,0.0002242998,0.000057982907,0.000010768499,0.000009282166,0.00082225184],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987685,0.0005821152,0.00031271137,0.00007291699,0.00009736229,0.00016639147],"domain_scores_gemma":[0.99906063,0.00010882924,0.00014168485,0.00016673631,0.00025582372,0.00026631664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008857029,0.00006517635,0.00016151134,0.000060660874,0.000278871,0.0000020425716,0.00003592844,0.00008344127,0.00013682489],"category_scores_gemma":[0.0007037026,0.000051361156,0.00003215739,0.00015626915,0.000047440994,0.00007418209,0.00005372537,0.00026598503,0.00014877414],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022221403,0.00041044704,0.75370586,0.0024967017,0.000030116027,0.0000011948316,0.0021461912,0.0000023673401,0.00020644061,0.00021787397,0.14114003,0.09942054],"study_design_scores_gemma":[0.00082196004,0.00016966322,0.1289765,0.000105440995,0.000020607058,5.432681e-7,0.00051273353,0.00000491167,0.000022705508,0.00011415262,0.86918354,0.0000672647],"about_ca_topic_score_codex":0.0002509168,"about_ca_topic_score_gemma":0.000036772348,"teacher_disagreement_score":0.7280435,"about_ca_system_score_codex":0.00006277806,"about_ca_system_score_gemma":0.00044290622,"threshold_uncertainty_score":0.21448785},"labels":[],"label_agreement":null},{"id":"W2079242559","doi":"10.1128/iai.74.4.2382-2391.2006","title":"CD8<sup>+</sup>T Cells but Not Polymorphonuclear Leukocytes Are Required To Limit Chronic Oral Carriage of<i>Candida albicans</i>in Transgenic Mice Expressing Human Immunodeficiency Virus Type 1","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; McGill University","funders":"","keywords":"Candida albicans; Biology; CD8; Immune system; Immunology; Corpus albicans; Cytotoxic T cell; Virology; Immunodeficiency; Virus; Microbiology; In vitro","score_opus":0.023589585176769096,"score_gpt":0.27390494339857724,"score_spread":0.25031535822180817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079242559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969243,0.0009788743,0.00007733102,0.000054767435,0.0001294509,0.00035581985,0.000028600787,0.00006302619,0.0013878513],"genre_scores_gemma":[0.9988459,0.00024812465,0.0000597892,0.00011576304,0.0000790599,0.000007796708,0.000023971914,0.000027797758,0.0005918079],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984407,0.00015206334,0.0005097225,0.00032010468,0.0002220888,0.00035536458],"domain_scores_gemma":[0.9991254,0.000083111,0.00013349627,0.000437547,0.00012790265,0.00009251367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000388946,0.00022809725,0.00047875525,0.00019793121,0.000340885,0.000040550924,0.00010099353,0.00015681579,0.00025028456],"category_scores_gemma":[0.00007997785,0.00022068725,0.0001397143,0.0004430626,0.00021929336,0.00019002722,0.000048300706,0.0003799516,0.000021148559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058990635,0.0003009111,0.033644088,0.00017198734,0.000021485694,0.000005708105,0.00051999517,0.00016985278,0.96357363,0.00002576106,0.00009050993,0.0008861652],"study_design_scores_gemma":[0.0017355945,0.00074117334,0.51237214,0.00035637498,0.00008137866,0.000011347183,0.000572679,0.00018500263,0.48206502,0.000020735428,0.001592228,0.00026630668],"about_ca_topic_score_codex":0.03505159,"about_ca_topic_score_gemma":0.0056344974,"teacher_disagreement_score":0.48150858,"about_ca_system_score_codex":0.00026916977,"about_ca_system_score_gemma":0.00014834428,"threshold_uncertainty_score":0.9713741},"labels":[],"label_agreement":null},{"id":"W2079753443","doi":"10.1128/iai.71.1.365-373.2003","title":"Selective Early Production of CCL20, or Macrophage Inflammatory Protein 3α, by Human Mast Cells in Response to<i>Pseudomonas aeruginosa</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mast cells and histamine","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"CCL20; Biology; Immune system; Cytokine; Chemokine; Innate immune system; Immunology; Microbiology","score_opus":0.00944054988056198,"score_gpt":0.21535535340471726,"score_spread":0.20591480352415528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079753443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976892,0.00027154057,0.00001561565,0.00008875436,0.0002854477,0.00062678126,0.000019685662,0.000050859788,0.0009521491],"genre_scores_gemma":[0.98213875,0.00006223564,0.00001775671,0.00003144502,0.000016190086,0.00005453567,0.000013570134,0.000015091068,0.017650452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984989,0.00061654125,0.00035261,0.00024964564,0.000040050476,0.00024223981],"domain_scores_gemma":[0.99943066,0.00005165566,0.00014214977,0.0002476356,0.00009601461,0.00003185891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049867324,0.00017476067,0.0002527345,0.00025522607,0.00026333964,0.000015538637,0.000079560254,0.00019777167,0.000678723],"category_scores_gemma":[0.00010526939,0.00016152902,0.00004213723,0.00033553905,0.00019364552,0.0001350967,0.00006529042,0.00045011827,0.00011545269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010619861,0.00039785332,0.0036886795,0.0000549981,0.000028945822,0.000002497304,0.0017957086,0.000003476087,0.98917234,0.00002321762,0.0020458307,0.0017244384],"study_design_scores_gemma":[0.001468466,0.0010662728,0.08679794,0.00007073311,0.000011971893,0.000025845813,0.00011030106,0.0000016842754,0.8683522,0.000015406735,0.041861903,0.00021728707],"about_ca_topic_score_codex":0.0019218505,"about_ca_topic_score_gemma":0.0005008487,"teacher_disagreement_score":0.12082017,"about_ca_system_score_codex":0.000072196155,"about_ca_system_score_gemma":0.000019868514,"threshold_uncertainty_score":0.74315405},"labels":[],"label_agreement":null},{"id":"W2079844538","doi":"10.1128/iai.73.6.3790-3793.2005","title":"<i>Entamoeba histolytica</i> -Secreted Products Degrade Colonic Mucin Oligosaccharides","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Entamoeba histolytica; Mucin; Biology; Mucus; Microbiology; Amoeba (genus); Intestinal mucosa; Biochemistry","score_opus":0.01790918386671666,"score_gpt":0.26993134641260946,"score_spread":0.2520221625458928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079844538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897504,0.00043510104,0.00009803928,0.0016596641,0.00023570312,0.000364047,0.0000042986476,0.00017077984,0.007281991],"genre_scores_gemma":[0.9961309,0.00044104087,0.0003533297,0.00047293367,0.00013961288,0.000034506687,0.000040967392,0.000015878912,0.0023708446],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992524,0.000059681934,0.00018112164,0.00019584745,0.00010569997,0.00020528027],"domain_scores_gemma":[0.9993923,0.000033240005,0.0000678498,0.0002820364,0.00011438972,0.00011024143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015103474,0.0001539568,0.00020647833,0.00013739527,0.00034535985,0.000024983361,0.000025890802,0.00009293906,0.0002424136],"category_scores_gemma":[0.00012073525,0.00013212017,0.00006132978,0.00027155585,0.00010969961,0.00017023337,0.000035581,0.00027975175,0.00013903655],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005827536,0.0040381313,0.7990415,0.00032811824,0.0008548713,0.000046322755,0.0014825014,0.000018305755,0.048653375,0.0024217637,0.01803224,0.12450009],"study_design_scores_gemma":[0.0035300255,0.00089827337,0.71889025,0.0000874591,0.00033003933,0.0009354703,0.000065546,0.00048299826,0.03335167,0.000112618574,0.24102299,0.0002926682],"about_ca_topic_score_codex":0.0013841678,"about_ca_topic_score_gemma":0.00016960314,"teacher_disagreement_score":0.22299075,"about_ca_system_score_codex":0.00021778194,"about_ca_system_score_gemma":0.00008525217,"threshold_uncertainty_score":0.53877044},"labels":[],"label_agreement":null},{"id":"W2080614570","doi":"10.1128/iai.69.9.5270-5277.2001","title":"Potent Stimulation of the Innate Immune System by a<i>Leishmania brasiliensis</i>Recombinant Protein","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Innate immune system; Pattern recognition receptor; Receptor; Immune system; Toll-like receptor; Cell biology; Microbiology; Immunology; Biochemistry","score_opus":0.016948175981902406,"score_gpt":0.26926125372561505,"score_spread":0.25231307774371264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080614570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959768,0.000467887,0.00011430654,0.0005340535,0.00018265068,0.0008406502,0.0000027101983,0.000054728036,0.0018262214],"genre_scores_gemma":[0.99849916,0.00029147742,0.000016374303,0.000035278455,0.00002183848,0.00003577126,0.000007613744,0.000012913466,0.0010795674],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99886984,0.00024164656,0.00031034052,0.00013769072,0.00026264883,0.0001778354],"domain_scores_gemma":[0.99914443,0.000036202553,0.00014513453,0.00035703328,0.00026391214,0.000053307023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047794264,0.00012217338,0.00025232072,0.00008611324,0.0003290107,0.000021689171,0.00006213295,0.00006946708,0.000016554839],"category_scores_gemma":[0.00022693329,0.00008313658,0.00008505036,0.0003323011,0.00014517664,0.00009174087,0.00013575843,0.00030085465,0.000007779672],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046037277,0.0008315831,0.44973615,0.00058380445,0.0002457076,0.000006062778,0.00043340735,0.000033762997,0.53146887,0.00045578243,0.0010957464,0.014648776],"study_design_scores_gemma":[0.0013116543,0.0003322569,0.9313657,0.00028397515,0.000037706497,0.00010007779,0.0001955715,0.00044301298,0.06293086,0.000023873648,0.0028918001,0.00008345866],"about_ca_topic_score_codex":0.0025848148,"about_ca_topic_score_gemma":0.000047038786,"teacher_disagreement_score":0.4816296,"about_ca_system_score_codex":0.000108628185,"about_ca_system_score_gemma":0.000036762784,"threshold_uncertainty_score":0.3907484},"labels":[],"label_agreement":null},{"id":"W2083520729","doi":"10.1128/iai.01260-12","title":"Enzymatic Modification of Lipid A by ArnT Protects Bordetella bronchiseptica against Cationic Peptides and Is Required for Transmission","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Bordetella bronchiseptica; Biology; Lipid A; Aryl hydrocarbon receptor nuclear translocator; Microbiology; Innate immune system; Bordetella; Lipopolysaccharide; Bacteria; Immune system; Bordetella pertussis; Immunology; Biochemistry; Genetics; Gene","score_opus":0.01789992838789098,"score_gpt":0.25562368973820543,"score_spread":0.23772376135031445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083520729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99574614,0.00054819335,0.0021367595,0.0002650485,0.00014401817,0.00080381485,0.000015390704,0.000043171556,0.00029745774],"genre_scores_gemma":[0.99822336,0.0008462312,0.000109890956,0.0000391222,0.000016160358,0.00018932721,0.00007876488,0.000009697706,0.0004874572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993351,0.00011752389,0.00026632237,0.00014382882,0.000011018685,0.00012621793],"domain_scores_gemma":[0.9994707,0.000082291335,0.00013486929,0.00015273926,0.00013630405,0.000023089422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015424067,0.00011583271,0.00017866939,0.000080851874,0.00032455716,0.000031375646,0.000035787456,0.00015833978,0.00018262865],"category_scores_gemma":[0.0000630754,0.00010059711,0.000045274333,0.00008645181,0.00009707258,0.00019329012,0.000017671973,0.00011753516,0.000015763177],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003911375,0.00012399169,0.00058135396,0.000111707464,0.00004101652,2.3698936e-9,0.00044855993,0.0000010581817,0.95233905,0.00008114311,0.0013544209,0.04487855],"study_design_scores_gemma":[0.0027699433,0.0010390279,0.07727551,0.00016228501,0.00007876424,0.00002492676,0.00020276189,0.00058895163,0.8481237,0.0010204505,0.06835156,0.00036209935],"about_ca_topic_score_codex":0.0010514408,"about_ca_topic_score_gemma":0.0000130295675,"teacher_disagreement_score":0.10421536,"about_ca_system_score_codex":0.000017389297,"about_ca_system_score_gemma":0.000021768932,"threshold_uncertainty_score":0.41022313},"labels":[],"label_agreement":null},{"id":"W2083578913","doi":"10.1128/iai.00609-09","title":"<i>Burkholderia pseudomallei</i>Isocitrate Lyase Is a Persistence Factor in Pulmonary Melioidosis: Implications for the Development of Isocitrate Lyase Inhibitors as Novel Antimicrobials","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Melioidosis; Burkholderia pseudomallei; Isocitrate lyase; Microbiology; Biology; Antibiotics; Mycobacterium; Bacteria; Glyoxylate cycle; Enzyme; Biochemistry","score_opus":0.05984274803550417,"score_gpt":0.3086447664483006,"score_spread":0.24880201841279642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083578913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99268275,0.000299568,0.0016986531,0.0031082982,0.00022670094,0.0011448907,0.000059097732,0.00006474055,0.00071530725],"genre_scores_gemma":[0.99674904,0.0007319124,0.0010150314,0.0010927528,0.00006711975,0.0001655651,0.000030498411,0.000019886136,0.00012818027],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985655,0.00006315242,0.0006530962,0.0003028346,0.00011633477,0.00029907175],"domain_scores_gemma":[0.9988026,0.00015742962,0.00024987382,0.0003805165,0.00028975846,0.0001198483],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000496889,0.00025407076,0.00038870843,0.00025610047,0.0006054348,0.00005581544,0.00009503111,0.00018848685,0.00006867676],"category_scores_gemma":[0.00014877712,0.00020622808,0.00021045003,0.000616001,0.00013546857,0.00022776732,0.00004193583,0.00030795397,0.0000057543057],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020554713,0.0013683969,0.017500075,0.00013453816,0.00014832457,6.8089435e-7,0.0026265695,0.000012506721,0.960953,0.00013701482,0.00041020525,0.016503159],"study_design_scores_gemma":[0.002668046,0.0005035588,0.75872934,0.00030558262,0.00020684338,0.00014808943,0.0010414713,0.00017672393,0.22980712,0.00013613075,0.00591721,0.00035988385],"about_ca_topic_score_codex":0.0005279437,"about_ca_topic_score_gemma":0.00009015373,"teacher_disagreement_score":0.7412293,"about_ca_system_score_codex":0.000115855946,"about_ca_system_score_gemma":0.00028380958,"threshold_uncertainty_score":0.8409737},"labels":[],"label_agreement":null},{"id":"W2086453860","doi":"10.1128/iai.71.1.536-540.2003","title":"Role of Virulence Factors in Resistance of Avian Pathogenic <i>Escherichia coli</i> to Serum and in Pathogenicity","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Virulence; Aerobactin; Biology; Microbiology; Fimbria; Escherichia coli; Pathogenic Escherichia coli; Plasmid; Virulence factor; Pilus; Enterobacteriaceae; Virology; Gene; Genetics","score_opus":0.012176415006536273,"score_gpt":0.24582296386991812,"score_spread":0.23364654886338185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086453860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997925,0.0013525365,0.000012637071,0.000022554279,0.000015123247,0.00015764986,0.000021212478,0.000003090029,0.0004901916],"genre_scores_gemma":[0.9976454,0.0021624914,0.00007935815,0.000032852684,0.0000053816334,0.000012790184,0.0000022800414,0.0000055514233,0.00005393418],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992953,0.00015984122,0.00018886405,0.000147569,0.000070982394,0.00013746078],"domain_scores_gemma":[0.9996614,0.00002327595,0.00005509442,0.00016073199,0.00005528188,0.000044214954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023194458,0.00008849702,0.00015595592,0.00006871076,0.0000422643,0.000005274946,0.00005807345,0.00007339172,0.0000071376335],"category_scores_gemma":[0.00022132495,0.00008836211,0.000025946423,0.0002480529,0.00009468912,0.0000074100035,0.0001300287,0.00012613436,3.1473584e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038203434,0.00006703898,0.37723053,0.00002647928,0.000005969215,1.8927568e-7,0.00023834335,0.0000043569003,0.6219426,0.0000057606585,0.000004382096,0.00043615422],"study_design_scores_gemma":[0.00026538997,0.00013898255,0.83848566,0.000026971391,0.000002441376,4.3026026e-7,0.00015153615,0.000031217078,0.16013284,0.000026342179,0.0006648282,0.00007337714],"about_ca_topic_score_codex":0.0006075711,"about_ca_topic_score_gemma":0.005079701,"teacher_disagreement_score":0.46180975,"about_ca_system_score_codex":0.000012855199,"about_ca_system_score_gemma":0.000013897495,"threshold_uncertainty_score":0.36033022},"labels":[],"label_agreement":null},{"id":"W2086464169","doi":"10.1128/iai.70.1.19-26.2002","title":"Serum Stimulates Growth of and Proteinase Secretion by<i>Aspergillus fumigatus</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Aspergillus fumigatus; Bovine serum albumin; Secretion; Biology; Fetal bovine serum; Microbiology; Serum albumin; Biochemistry; In vitro","score_opus":0.015377659566427924,"score_gpt":0.24580305875941644,"score_spread":0.23042539919298852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086464169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969001,0.00079443865,0.00009520413,0.00019030682,0.000029615187,0.00023288066,0.000010810503,0.000035852576,0.0017108222],"genre_scores_gemma":[0.9982017,0.0011538117,0.000024746003,0.00009408514,0.000015041698,0.0000042845136,0.000011075982,0.0000061314777,0.00048910186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99947774,0.000063125015,0.00015422812,0.000118107455,0.00008839322,0.00009843005],"domain_scores_gemma":[0.99960375,0.000032658536,0.000050335875,0.00013439429,0.0001066185,0.00007221676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016228702,0.00008619343,0.00016776199,0.000042426953,0.00011792822,0.000010410479,0.000014023654,0.00007825219,0.00020487387],"category_scores_gemma":[0.00014707222,0.00007341792,0.000029153536,0.00011508274,0.00014788314,0.000113281836,0.000022195867,0.00017117629,0.000004503395],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021239225,0.00036879783,0.8400826,0.0004660857,0.00004204325,0.0000025059462,0.00040757272,6.6278074e-7,0.14598648,0.00016756557,0.0005862974,0.011676997],"study_design_scores_gemma":[0.0012497028,0.000772832,0.9640471,0.000108698754,0.000048654696,0.00002586043,0.00008171902,0.0011564768,0.031130036,0.00022022016,0.0010439132,0.00011479167],"about_ca_topic_score_codex":0.0005760863,"about_ca_topic_score_gemma":0.000036015866,"teacher_disagreement_score":0.1239645,"about_ca_system_score_codex":0.000019244517,"about_ca_system_score_gemma":0.0000073695164,"threshold_uncertainty_score":0.2993896},"labels":[],"label_agreement":null},{"id":"W2086611034","doi":"10.1128/iai.02008-06","title":"Differential Contribution of Bacterial <i>N</i> -Formyl-Methionyl-Leucyl- Phenylalanine and Host-Derived CXC Chemokines to Neutrophil Infiltration into Pulmonary Alveoli during Murine Pneumococcal Pneumonia","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Streptococcus pneumoniae; Pneumonia; Chemokine; Infiltration (HVAC); Pneumococcal pneumonia; Immunology; Inflammation; Antibiotics; Medicine; Internal medicine","score_opus":0.007924061944952364,"score_gpt":0.2592591295114018,"score_spread":0.2513350675664494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086611034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99746376,0.000035363337,0.00049160415,0.000415265,0.00060674926,0.0005719693,0.000012001062,0.00012393264,0.00027933953],"genre_scores_gemma":[0.99899656,0.0002492628,0.000022944518,0.00012718757,0.0004248938,0.000026209635,0.00008558023,0.000022967552,0.00004438636],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985915,0.000101617436,0.00054755626,0.0002695397,0.00018876894,0.0003010347],"domain_scores_gemma":[0.9989536,0.000075476404,0.00018800917,0.0002497568,0.0002680172,0.00026514413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002907021,0.00026715954,0.00043592087,0.0003435257,0.000443356,0.00004123651,0.000045202964,0.00023081314,0.00009465947],"category_scores_gemma":[0.0001805426,0.0002416476,0.00009312782,0.00034757564,0.00017840085,0.000273985,0.00011450052,0.00040985658,0.000005076015],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006146735,0.0002941865,0.07759994,0.00012626071,0.00006363532,0.000009738536,0.00030269925,0.0000019760782,0.9186252,0.000037763253,0.0000030215313,0.0023209064],"study_design_scores_gemma":[0.0013723978,0.0005627359,0.6366725,0.000066675646,0.00007607851,0.0003236754,0.000043416698,0.000021708665,0.35982585,0.00001978491,0.0008655485,0.000149617],"about_ca_topic_score_codex":0.0005007759,"about_ca_topic_score_gemma":0.00018496148,"teacher_disagreement_score":0.55907255,"about_ca_system_score_codex":0.00009703009,"about_ca_system_score_gemma":0.000047753547,"threshold_uncertainty_score":0.98541033},"labels":[],"label_agreement":null},{"id":"W2090280856","doi":"10.1128/iai.00457-10","title":"Natural Selection in the Chicken Host Identifies 3-Deoxy- <scp>d</scp> - <i>manno</i> - Octulosonic Acid Kinase Residues Essential for Phosphorylation of <i>Pasteurella multocida</i> Lipopolysaccharide","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Pasteurella multocida; Complementation; Biology; Fowl cholera; Mutant; Lipopolysaccharide; Biochemistry; Microbiology; Molecular biology; Gene; Bacteria; Genetics","score_opus":0.009405345450118487,"score_gpt":0.26843367197516566,"score_spread":0.25902832652504715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090280856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964998,0.0011244512,0.00020812484,0.000077550314,0.0009687824,0.0006717396,0.000046972706,0.000058037145,0.00034455405],"genre_scores_gemma":[0.99882424,0.00032927722,0.000018990562,0.00006744878,0.00008739616,0.000085537606,0.0001246616,0.000016022788,0.00044644135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986112,0.0003794313,0.00036903363,0.00025362827,0.00006487496,0.00032183234],"domain_scores_gemma":[0.9988677,0.0004565843,0.00017969312,0.00023694795,0.00023237595,0.000026703603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084460515,0.00019196382,0.0002341715,0.00026649187,0.00069698686,0.00009523981,0.00015196876,0.0002862495,0.00008334479],"category_scores_gemma":[0.0006396025,0.00015694181,0.00014478904,0.0003395119,0.00032965056,0.00028882953,0.000079386264,0.0009292898,0.00002575841],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010354537,0.0002887852,0.0078004883,0.00006870152,0.00006532331,3.8558233e-7,0.0006960578,0.000005015436,0.98762894,0.0007405511,0.0017468588,0.00085535925],"study_design_scores_gemma":[0.0013417908,0.00020575273,0.07730217,0.00003115879,0.00006093899,0.00006572892,0.00044988736,0.0000448469,0.913332,0.00033673237,0.006731197,0.00009783076],"about_ca_topic_score_codex":0.005208352,"about_ca_topic_score_gemma":0.00580797,"teacher_disagreement_score":0.074296966,"about_ca_system_score_codex":0.00002702685,"about_ca_system_score_gemma":0.00008175887,"threshold_uncertainty_score":0.78735054},"labels":[],"label_agreement":null},{"id":"W2091076501","doi":"10.1128/iai.00293-12","title":"Invasive Potential of Nonencapsulated Disease Isolates of Neisseria meningitidis","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; Institute for Biological Sciences; Public Health Agency of Canada; Public Health Ontario; University of Toronto","funders":"National Institutes of Health","keywords":"Virulence; Biology; Neisseria meningitidis; Microbiology; Bacterial capsule; Gene; Virulence factor; Pathogen; Virology; Bacteria; Genetics","score_opus":0.012273939723146677,"score_gpt":0.2396814888617941,"score_spread":0.22740754913864744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091076501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99790394,0.00082848343,0.00006374422,0.000016893986,0.0008293122,0.000090850226,0.000022514037,0.000026770891,0.00021750701],"genre_scores_gemma":[0.99951524,0.00028665076,0.0000075364514,0.000005671514,0.000023863759,0.000004660867,0.000058248865,0.000005888576,0.000092217655],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994476,0.0001353775,0.00021542386,0.000064054475,0.000005826134,0.00013174587],"domain_scores_gemma":[0.99956363,0.000043611668,0.00013576342,0.0001332319,0.00009611242,0.000027635817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012886302,0.00008872686,0.00016897444,0.000093517534,0.00013038586,0.0000051992934,0.000032393167,0.00009641268,0.0006598667],"category_scores_gemma":[0.00008510818,0.000078542944,0.000062569234,0.00011789909,0.00009814821,0.00020373017,0.000051583414,0.00010929273,0.000016847296],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012376688,0.00021619107,0.111975506,0.00003216733,0.000089907204,2.3343958e-8,0.00018360272,0.0000027030992,0.88648844,0.0002328409,0.00005415054,0.00060069823],"study_design_scores_gemma":[0.00050753175,0.000118141994,0.7111044,0.000024506038,0.00006493923,0.000017878718,0.000061664265,0.0000027293634,0.28713852,0.00006592293,0.0008195653,0.00007420524],"about_ca_topic_score_codex":0.0016285076,"about_ca_topic_score_gemma":0.000017449609,"teacher_disagreement_score":0.5993499,"about_ca_system_score_codex":0.0000069766866,"about_ca_system_score_gemma":0.000020581088,"threshold_uncertainty_score":0.7225078},"labels":[],"label_agreement":null},{"id":"W2092501480","doi":"10.1128/iai.68.2.839-847.2000","title":"Lack of a Role of Cytotoxic Necrotizing Factor 1 Toxin from<i>Escherichia coli</i>in Bacterial Pathogenicity and Host Cytokine Response in Infected Germfree Piglets","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Saint Hyacinthe","funders":"Natural Sciences and Engineering Research Council of Canada; Institut National de la Recherche Agronomique","keywords":"Biology; Microbiology; Cecum; Ileum; Mesenteric lymph nodes; Spleen; Escherichia coli; Cytokine; Immunology; Gene","score_opus":0.016714974103487924,"score_gpt":0.2737971906849286,"score_spread":0.25708221658144065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092501480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991356,0.00029897722,0.0000068351646,0.000019268839,0.0000250177,0.00026620107,0.00009478571,0.000007538256,0.00014574401],"genre_scores_gemma":[0.99864036,0.0011685396,0.0000703074,0.000025370437,0.000023215776,0.000020975547,0.000021666825,0.000011089276,0.000018457551],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986702,0.0005586798,0.0003029377,0.0001981703,0.00008681483,0.00018319118],"domain_scores_gemma":[0.9994819,0.00009506972,0.0000886488,0.0002162904,0.000066862434,0.000051227475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036621033,0.00014218922,0.00027403276,0.000091355076,0.000054659697,0.000014335477,0.000058301648,0.00014858098,0.00007915389],"category_scores_gemma":[0.0004434523,0.00014454477,0.000043631153,0.00022569571,0.00015842762,0.000014286719,0.00013934595,0.00020347835,7.275174e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019828628,0.0001641038,0.18150796,0.000020448457,0.00002606035,0.0000013266015,0.0002783256,0.000003520681,0.81524855,9.822018e-7,0.0000017476364,0.00076410244],"study_design_scores_gemma":[0.0010177369,0.000388098,0.66286695,0.000027192304,0.000004044993,0.0000015528054,0.000036625966,0.00003994404,0.33509722,0.0000114252625,0.00042279615,0.000086445354],"about_ca_topic_score_codex":0.0035943734,"about_ca_topic_score_gemma":0.0019980287,"teacher_disagreement_score":0.48135898,"about_ca_system_score_codex":0.000022608818,"about_ca_system_score_gemma":0.000069041955,"threshold_uncertainty_score":0.5894365},"labels":[],"label_agreement":null},{"id":"W2095995468","doi":"10.1128/iai.73.11.7602-7612.2005","title":"Regulation of RANTES Promoter Activation in Gastric Epithelial Cells Infected with<i>Helicobacter pylori</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Kaohsiung Medical University; Universidad Nacional de Colombia; University of Alberta; Kaohsiung Medical University Chung-Ho Memorial Hospital; Hokkaido University; U.S. Department of Veterans Affairs","keywords":"Biology; Helicobacter pylori; Chemokine; Molecular biology; Gastric mucosa; Electrophoretic mobility shift assay; Transcription factor; Immunology; Inflammation; Gene; Stomach","score_opus":0.01173655503429601,"score_gpt":0.23670034006089102,"score_spread":0.224963785026595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095995468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997711,0.000012391411,0.0007650972,0.000650031,0.00007559533,0.0003926352,0.0000034520676,0.00005916641,0.0003306526],"genre_scores_gemma":[0.99925435,0.0000879638,0.000256489,0.00019056938,0.00007595719,0.00002023148,0.000026634467,0.000014789762,0.00007301424],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999048,0.00013798606,0.00033923396,0.00016447032,0.00012123338,0.00018906158],"domain_scores_gemma":[0.99934304,0.000055835375,0.00015527983,0.0001825315,0.00021497248,0.000048314654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021515855,0.0001582338,0.0002807168,0.0003252559,0.0000721175,0.000011146072,0.000025491543,0.00012241173,0.0000475924],"category_scores_gemma":[0.000079186524,0.0001292451,0.000037098478,0.00041330434,0.00012504267,0.00031186535,0.000032843393,0.00039749485,0.000009874897],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068446185,0.00033231324,0.47710806,0.000045211327,0.000093487826,6.015317e-7,0.0006700662,0.0000361526,0.5106063,0.0000053281146,0.000028098208,0.010389927],"study_design_scores_gemma":[0.0028803456,0.00070643454,0.8514314,0.00011576042,0.000053681673,0.00003622208,0.000027514829,0.0001688484,0.14396723,0.000010210193,0.0005258774,0.00007643268],"about_ca_topic_score_codex":0.00044271792,"about_ca_topic_score_gemma":0.00021415004,"teacher_disagreement_score":0.3743234,"about_ca_system_score_codex":0.000087594344,"about_ca_system_score_gemma":0.00003294809,"threshold_uncertainty_score":0.52704626},"labels":[],"label_agreement":null},{"id":"W2096143852","doi":"10.1128/iai.68.3.1156-1163.2000","title":"Synthetic Peptide Immunogens Elicit Polyclonal and Monoclonal Antibodies Specific for Linear Epitopes in the D Motifs of <i>Staphylococcus aureus</i> Fibronectin-Binding Protein, Which Are Composed of Amino Acids That Are Essential for Fibronectin Binding","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre; North York General Hospital","funders":"Medical Research Council; Medical Research Council Canada; Health Sciences Centre Foundation","keywords":"Immunogen; Polyclonal antibodies; Epitope; Biology; Monoclonal antibody; Antibody; Molecular biology; Staphylococcus aureus; Peptide; Binding site; Epitope mapping; Biochemistry; Bacteria; Immunology","score_opus":0.024351994731867565,"score_gpt":0.27458552090095384,"score_spread":0.2502335261690863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096143852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963188,0.00059353554,0.0003526687,0.00024143275,0.000106253734,0.0019377262,0.0003066439,0.000034105517,0.00010879591],"genre_scores_gemma":[0.9977566,0.0006445854,0.0011550758,0.000022357503,0.00009876317,0.0000810116,0.00007646066,0.000037291753,0.00012783949],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982452,0.00018181249,0.00060070044,0.000350914,0.00023997073,0.00038140992],"domain_scores_gemma":[0.9982153,0.00057098916,0.00045437377,0.00044217551,0.00025611953,0.000061026985],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006529371,0.0003130615,0.0006815161,0.00028389494,0.00044419192,0.000050924707,0.00016657742,0.00018689017,0.000042507847],"category_scores_gemma":[0.00029756408,0.00026206163,0.00020232717,0.00039176698,0.000346232,0.00016000286,0.00007030266,0.0003866662,0.0000014587725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00215684,0.00037096438,0.14103037,0.0011169149,0.00013249001,0.0000026090518,0.0007925427,0.000051886433,0.8528498,0.00003238088,0.00014592397,0.0013172819],"study_design_scores_gemma":[0.0033225114,0.0007742562,0.39852,0.0019083765,0.00014164584,0.000044361303,0.0021822085,0.00029403807,0.59083855,0.000065832064,0.001570298,0.00033790624],"about_ca_topic_score_codex":0.00043455104,"about_ca_topic_score_gemma":0.00026773536,"teacher_disagreement_score":0.26201123,"about_ca_system_score_codex":0.00006773918,"about_ca_system_score_gemma":0.0000624895,"threshold_uncertainty_score":0.99998313},"labels":[],"label_agreement":null},{"id":"W2096396297","doi":"10.1128/iai.00571-08","title":"Atypical Roles for <i>Campylobacter jejuni</i> Amino Acid ATP Binding Cassette Transporter Components PaqP and PaqQ in Bacterial Stress Tolerance and Pathogen-Host Cell Dynamics","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Michael Smith Health Research BC","keywords":"Biology; ATP-binding cassette transporter; Campylobacter jejuni; Glutamine; Mutant; Wild type; Permease; Biochemistry; Microbiology; Transporter; Amino acid; Genetics; Bacteria","score_opus":0.01677337829296261,"score_gpt":0.2252418137392731,"score_spread":0.2084684354463105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096396297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99862236,0.00015360193,0.00002290747,0.00047037684,0.00016653516,0.0002488075,0.0002288466,0.000032885844,0.00005369923],"genre_scores_gemma":[0.9985644,0.0005190817,0.00003265595,0.00038266976,0.00010269068,0.000010930886,0.00036775396,0.0000016352103,0.000018178218],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893117,0.00016848228,0.00028265713,0.00028285658,0.000055466742,0.00027939412],"domain_scores_gemma":[0.9995678,0.00015370738,0.00009233218,0.000057533794,0.000029974293,0.00009861692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002513716,0.00018840042,0.00029293078,0.0000247697,0.00023771927,0.00006824365,0.000065700035,0.00019603084,0.000023876333],"category_scores_gemma":[0.000017527202,0.000098889635,0.000052257703,0.00010281509,0.0000879758,0.0001726886,0.000029903187,0.00019810174,0.000001207528],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002482264,0.00014731078,0.48085117,0.000015330408,0.0000054674956,0.0000022353763,0.00015016239,5.710403e-7,0.49881333,0.0000260079,0.000011562034,0.019728635],"study_design_scores_gemma":[0.0006459894,0.0003989381,0.9938787,0.00003319877,0.000014654027,0.000021111367,0.00009696791,0.0002006309,0.0023664855,0.000100865815,0.0020440898,0.00019833141],"about_ca_topic_score_codex":0.00032790823,"about_ca_topic_score_gemma":0.001767909,"teacher_disagreement_score":0.51302755,"about_ca_system_score_codex":0.00002362805,"about_ca_system_score_gemma":0.0000029939486,"threshold_uncertainty_score":0.40326023},"labels":[],"label_agreement":null},{"id":"W2096515501","doi":"10.1128/iai.68.2.637-643.2000","title":"<i>Streptococcus suis</i> Serotype 2 Interactions with Human Brain Microvascular Endothelial Cells","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Neurological Disorders and Stroke; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Streptococcus suis; Biology; Microbiology; Hemolysin; Serotype; Pathogenesis; Cytolysin; Endothelial stem cell; Bacterial capsule; Cytotoxic T cell; Bacteria; Umbilical vein; Immunology; Virulence; Gene; In vitro","score_opus":0.01326518892510701,"score_gpt":0.28079792887609756,"score_spread":0.26753273995099053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096515501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9803027,0.000026215745,0.00005458698,0.00013204309,0.00010563267,0.0005137278,0.000011035072,0.00013730176,0.018716749],"genre_scores_gemma":[0.9932909,0.0000806884,0.000060215825,0.00025147595,0.0000893024,0.0000816213,0.000049853432,0.000019810528,0.0060761203],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992947,0.00007580826,0.00017236493,0.00019725025,0.00008596113,0.00017388814],"domain_scores_gemma":[0.9994292,0.000041826253,0.000043360724,0.0002975512,0.00007337167,0.000114639704],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007724582,0.00016880412,0.0001987959,0.00010399647,0.0004256787,0.000048318747,0.000024249808,0.00006549614,0.003484723],"category_scores_gemma":[0.000009618399,0.00013338405,0.000103347025,0.00020868158,0.00010390268,0.00014496714,0.000015197712,0.00029752706,0.00017974517],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028843613,0.0016629568,0.7399264,0.000055760873,0.0006230967,0.00003004959,0.00026624723,0.000022676682,0.21785848,0.00007611845,0.0017714766,0.037418306],"study_design_scores_gemma":[0.0043857894,0.0013049014,0.69167894,0.000116677424,0.00023986059,0.00041175017,0.000049052866,0.000021648839,0.10185191,0.00005528139,0.19963862,0.00024557227],"about_ca_topic_score_codex":0.003682006,"about_ca_topic_score_gemma":0.00040231986,"teacher_disagreement_score":0.19786714,"about_ca_system_score_codex":0.00006517148,"about_ca_system_score_gemma":0.000029164512,"threshold_uncertainty_score":0.9974262},"labels":[],"label_agreement":null},{"id":"W2096786316","doi":"10.1128/iai.00452-10","title":"Increased Pho Regulon Activation Correlates with Decreased Virulence of an Avian Pathogenic <i>Escherichia coli</i> O78 Strain","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Regulon; Virulence; Biology; Microbiology; Pathogenic Escherichia coli; Escherichia coli; Mutant; Genetics; Gene","score_opus":0.007625344144068641,"score_gpt":0.24822832163508696,"score_spread":0.2406029774910183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096786316","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987102,0.000047268662,0.00034277304,0.00002289682,0.000048206588,0.00021777062,0.000021517873,0.000021511165,0.00056784897],"genre_scores_gemma":[0.999021,0.00015051958,0.00050584704,0.00008658275,0.00004267473,0.000031415155,0.00011085224,0.000014445357,0.000036681093],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991771,0.00019920181,0.00014600235,0.00019701911,0.00012039816,0.00016027108],"domain_scores_gemma":[0.99924594,0.00003499213,0.00011022522,0.0003125811,0.0001925875,0.000103648024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035297434,0.00013727901,0.00013359798,0.000045727807,0.00020636819,0.000025139028,0.0000872223,0.00013678824,0.000018696375],"category_scores_gemma":[0.00029677828,0.00012001664,0.000035232835,0.00016846105,0.00023926009,0.00002265668,0.00006510882,0.00029419555,9.668342e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028420048,0.00018529838,0.044527553,0.000022582446,0.000043015058,4.531748e-7,0.00006657985,0.0000043951154,0.95180625,0.000028943929,0.000010387838,0.0030203266],"study_design_scores_gemma":[0.0007321091,0.00077542703,0.52592707,0.000019049588,0.000017193832,0.000008471518,0.00009117975,0.00016727192,0.47136554,0.000040920524,0.00071414403,0.00014163689],"about_ca_topic_score_codex":0.0014831334,"about_ca_topic_score_gemma":0.0013617497,"teacher_disagreement_score":0.4813995,"about_ca_system_score_codex":0.000009188521,"about_ca_system_score_gemma":0.00011545033,"threshold_uncertainty_score":0.48941365},"labels":[],"label_agreement":null},{"id":"W2097384181","doi":"10.1128/iai.00572-08","title":"<i>Moraxella catarrhalis</i> Binding to Host Cellular Receptors Is Mediated by Sequence-Specific Determinants Not Conserved among All UspA1 Protein Variants","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Moraxella catarrhalis; Biology; Bacterial adhesin; Fibronectin; Cell adhesion; Cell biology; Plasma protein binding; Microbiology; Receptor; Laminin; Binding protein; DNA-binding protein; Conserved sequence; Moraxella (Branhamella) catarrhalis; Integrin; Pilus; Cell adhesion molecule; Peptide sequence; Cell; Genetics; Haemophilus influenzae; Virulence; Gene; Extracellular matrix; Transcription factor","score_opus":0.056336615107166636,"score_gpt":0.275934078908312,"score_spread":0.21959746380114537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097384181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972625,0.00006215092,0.00005890105,0.00053715846,0.00050012564,0.00083254604,0.00008506347,0.00017202474,0.00048957026],"genre_scores_gemma":[0.9965213,0.00053572893,0.000020783671,0.001433963,0.00008055631,0.0000772957,0.00009134164,0.00003548357,0.0012035328],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998359,0.00023502688,0.00042594346,0.00035746506,0.00024184688,0.0003807069],"domain_scores_gemma":[0.99880254,0.000069354406,0.00015498597,0.00040614087,0.00017114184,0.00039584306],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032953965,0.00028388944,0.00038623108,0.00027153437,0.0007500069,0.00005005742,0.000085306245,0.0002550877,0.00030166886],"category_scores_gemma":[0.00016816432,0.0002608667,0.0001035734,0.000538511,0.00027739294,0.00023865406,0.00006915928,0.0005257456,0.00021262375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005492507,0.00018356412,0.15941866,0.00003541259,0.000054639302,0.00005340054,0.0006909943,4.6763208e-7,0.8353019,0.0000015506499,0.0039526154,0.00025188684],"study_design_scores_gemma":[0.0018245346,0.00076000695,0.19112158,0.0002417095,0.000077999095,0.00041280934,0.00013146069,0.00006309315,0.6469121,0.0000033569106,0.15793975,0.0005116261],"about_ca_topic_score_codex":0.003137078,"about_ca_topic_score_gemma":0.0001542581,"teacher_disagreement_score":0.18838981,"about_ca_system_score_codex":0.00013664822,"about_ca_system_score_gemma":0.00010630977,"threshold_uncertainty_score":0.9999844},"labels":[],"label_agreement":null},{"id":"W2097388284","doi":"10.1128/iai.73.2.1081-1096.2005","title":"Murein Lipoprotein Is a Critical Outer Membrane Component Involved in<i>Salmonella enterica</i>Serovar Typhimurium Systemic Infection","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Calgary; Texas Higher Education Coordinating Board","keywords":"Salmonella enterica; Biology; Bacterial outer membrane; Serotype; Salmonella; Microbiology; Enterobacteriaceae; Virology; Bacteria; Escherichia coli; Gene; Genetics","score_opus":0.01650417275671496,"score_gpt":0.291900894798853,"score_spread":0.27539672204213805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097388284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99775183,0.000629688,0.00032905376,0.00026729226,0.000112426336,0.0002755808,0.000012346476,0.000023134193,0.0005986678],"genre_scores_gemma":[0.99781847,0.0014246885,0.00005455573,0.00026178715,0.00014721318,0.000074915246,0.00006311954,0.000014525681,0.00014072492],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990317,0.00017227358,0.00020805854,0.0002424322,0.00011156045,0.0002339613],"domain_scores_gemma":[0.99952465,0.000013753731,0.000040902785,0.0002459291,0.00007347484,0.00010129615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018636137,0.00015045707,0.00015390066,0.000097146934,0.00012103627,0.00004789075,0.00005052213,0.00013186605,0.0000621641],"category_scores_gemma":[0.0000555531,0.00014468147,0.00006989369,0.000111913374,0.00008261994,0.000017972367,0.000100674486,0.00020114638,0.000037878563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006365247,0.0009799263,0.11059466,0.00021888217,0.00015534967,0.000012058827,0.00023601575,0.00004455641,0.8718032,0.000045013716,0.0007613929,0.014512404],"study_design_scores_gemma":[0.0050825165,0.0015444577,0.22152604,0.0002312825,0.000053967473,0.00028395586,0.00007871923,0.00077726913,0.7194754,0.000082498475,0.05025022,0.00061365595],"about_ca_topic_score_codex":0.008070499,"about_ca_topic_score_gemma":0.0022893138,"teacher_disagreement_score":0.1523278,"about_ca_system_score_codex":0.00007928234,"about_ca_system_score_gemma":0.000033918077,"threshold_uncertainty_score":0.99853486},"labels":[],"label_agreement":null},{"id":"W2097419191","doi":"10.1128/iai.00863-08","title":"Neutrophils Are Essential for Rapid Clearance of<i>Enterococcus faecium</i>in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Enterococcus faecium; Bacteremia; Neutropenia; Biology; Immunology; Peritonitis; Peritoneal cavity; Microbiology; Chemokine; Tumor necrosis factor alpha; Cytokine; Immune system; Antibiotics; Chemotherapy","score_opus":0.021779971385964325,"score_gpt":0.27541440649807686,"score_spread":0.25363443511211253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097419191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99721664,0.0003843783,0.0009861806,0.00018082357,0.0002006226,0.00042923662,0.000011285131,0.00002982865,0.00056100875],"genre_scores_gemma":[0.9979858,0.0014207268,0.00019611529,0.00016672713,0.0000669947,0.000018920005,0.000007738254,0.00001306262,0.00012392458],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993008,0.000053234166,0.00026045862,0.00014583656,0.00007775276,0.00016194407],"domain_scores_gemma":[0.9994046,0.00006530004,0.0001293167,0.0002202147,0.00013291175,0.00004767035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001259542,0.00010826223,0.00028088718,0.00011788299,0.00012509803,0.000005818574,0.000052860294,0.00008382972,0.000026745303],"category_scores_gemma":[0.00015604217,0.00010655746,0.00010015352,0.00018192396,0.00017919549,0.00008896175,0.00003454769,0.00020052935,0.000004288651],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003274175,0.0008152143,0.42762554,0.00062961475,0.00007687794,0.00002294703,0.0006650449,0.000028906006,0.5600109,0.000077604986,0.002506646,0.0042665116],"study_design_scores_gemma":[0.0024442612,0.0002727653,0.92795515,0.00017488803,0.000025467589,0.000052955744,0.000057162215,0.000047145175,0.0623607,0.000038825365,0.0064662513,0.00010443383],"about_ca_topic_score_codex":0.00034865402,"about_ca_topic_score_gemma":0.00009491155,"teacher_disagreement_score":0.5003296,"about_ca_system_score_codex":0.000035831108,"about_ca_system_score_gemma":0.000036462352,"threshold_uncertainty_score":0.4345287},"labels":[],"label_agreement":null},{"id":"W2097479016","doi":"10.1128/iai.01447-08","title":"<i>Leishmania major</i>Phosphoglycans Influence the Host Early Immune Response by Modulating Dendritic Cell Functions","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Immune system; Leishmania; Dendritic cell; Host (biology); Immunology; Host response; Leishmania major; Microbiology; Cell biology; Parasite hosting; Genetics","score_opus":0.012103910657471923,"score_gpt":0.2673380104444357,"score_spread":0.2552340997869638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097479016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991414,0.001184994,0.00013406241,0.0029719942,0.000117569594,0.00044746423,0.000011214971,0.00013438854,0.0035843167],"genre_scores_gemma":[0.99602437,0.00048028285,0.000034265624,0.00076677266,0.00003708643,0.000034329005,0.00000907577,0.000017264529,0.002596579],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99839747,0.0003836028,0.0003242525,0.00023035491,0.00030168373,0.00036262485],"domain_scores_gemma":[0.9986447,0.0003475774,0.00009558058,0.00050798286,0.0002754065,0.00012872778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008495056,0.0001981918,0.00025532965,0.00012144458,0.001195759,0.00013157804,0.000104016595,0.000094731746,0.000062327555],"category_scores_gemma":[0.0007900972,0.00015242086,0.00009636112,0.00047511212,0.0002463918,0.00030812054,0.0000920841,0.0007702759,0.00006916842],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012843552,0.0005439504,0.08966064,0.00005149805,0.0001095931,0.000016488711,0.0017665032,0.00002060622,0.8973045,0.000059945036,0.0030859911,0.0060959733],"study_design_scores_gemma":[0.0010716259,0.0010148584,0.9711874,0.00006674667,0.00005860383,0.000082526676,0.0004143545,0.00007220616,0.015963767,0.00004688687,0.009868657,0.00015236723],"about_ca_topic_score_codex":0.0040733465,"about_ca_topic_score_gemma":0.000059124075,"teacher_disagreement_score":0.88152677,"about_ca_system_score_codex":0.00012156526,"about_ca_system_score_gemma":0.000069568705,"threshold_uncertainty_score":0.9196933},"labels":[],"label_agreement":null},{"id":"W2098118889","doi":"10.1128/iai.01834-06","title":"Mouse Model of Oral Infection with Virulent Type A <i>Francisella tularensis</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; National Research Council Canada; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Francisella tularensis; Tularemia; Biology; Microbiology; Spleen; Tumor necrosis factor alpha; Pathogen; Interferon gamma; Virulence; Cytokine; Virology; Interferon; Immunology","score_opus":0.020295247454373812,"score_gpt":0.27172435351692753,"score_spread":0.2514291060625537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098118889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98374194,0.00007262937,0.014823333,0.000008176895,0.00008523234,0.0001167012,0.0000070690116,0.000012345966,0.0011325993],"genre_scores_gemma":[0.9987829,0.000647608,0.00022253688,0.000051751158,0.00003438788,0.0000026768303,0.00003139734,0.0000124553,0.00021431912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994091,0.00004928702,0.00014562192,0.000137473,0.00009785391,0.00016065933],"domain_scores_gemma":[0.9994677,0.000006923775,0.000055571625,0.00019698907,0.00020542713,0.00006743368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004329541,0.000099968645,0.000115611576,0.000057722922,0.000101387894,0.000015079727,0.000034845925,0.00011587429,0.000014486654],"category_scores_gemma":[0.00004545269,0.00008458759,0.00003744248,0.00012744198,0.00010325423,0.0000073439296,0.000051358078,0.000121053024,0.0000028138672],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005566933,0.000098682,0.013716508,0.000024479456,0.000031786072,2.0335398e-7,0.000034924116,0.00016754739,0.9781792,0.000042640753,0.00005363118,0.007093704],"study_design_scores_gemma":[0.0008172361,0.0008470536,0.026585622,0.000010093237,0.000016818118,0.000011233159,0.00000893907,0.00043827953,0.9635514,0.000037271842,0.0075218547,0.00015418003],"about_ca_topic_score_codex":0.0010067561,"about_ca_topic_score_gemma":0.00074635335,"teacher_disagreement_score":0.015040955,"about_ca_system_score_codex":0.000011981335,"about_ca_system_score_gemma":0.00004057922,"threshold_uncertainty_score":0.3449382},"labels":[],"label_agreement":null},{"id":"W2098232602","doi":"10.1128/iai.05109-11","title":"Helicobacter pylori Activates Calpain via Toll-Like Receptor 2 To Disrupt Adherens Junctions in Human Gastric Epithelial Cells","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Calpain Protease Function and Regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; St. Paul's Hospital; University of British Columbia; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Adherens junction; Biology; Helicobacter pylori; Toll-like receptor; Microbiology; Calpain; Helicobacter; Cell biology; Receptor; Immunology; Innate immune system; Genetics; Cell; Cadherin; Biochemistry","score_opus":0.015219373916777195,"score_gpt":0.23998723118888807,"score_spread":0.22476785727211088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098232602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922348,0.00001853605,0.005947896,0.000041530937,0.00072098174,0.000302914,0.000011764866,0.00003284927,0.00068867486],"genre_scores_gemma":[0.99787575,0.000046521734,0.00012326792,0.00019883798,0.0001662125,0.00005884616,0.00009570078,0.000016385506,0.0014184834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913466,0.00017828764,0.0002052373,0.0002335304,0.000066615634,0.0001816781],"domain_scores_gemma":[0.99952966,0.00000832781,0.000059780752,0.00022688949,0.0000653127,0.000110044995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021614763,0.00014876868,0.000117015436,0.0001503201,0.00022127463,0.000023662591,0.00004930785,0.00016330105,0.0003295082],"category_scores_gemma":[0.000035948433,0.00014081682,0.00006809833,0.00020253775,0.00005590949,0.000014534934,0.000072061346,0.00017025402,0.000040524475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013981179,0.00019412316,0.010646016,0.000009276635,0.000023215163,3.6233703e-7,0.00018492289,0.000011322979,0.982284,0.00001709468,0.0008412271,0.0056486106],"study_design_scores_gemma":[0.0008666777,0.00073488906,0.24135828,0.000018637815,0.000017250908,0.000019268298,0.00011695355,0.00003549126,0.68203634,0.000081646074,0.07442013,0.00029439968],"about_ca_topic_score_codex":0.0013584689,"about_ca_topic_score_gemma":0.0005738758,"teacher_disagreement_score":0.30024764,"about_ca_system_score_codex":0.00003761515,"about_ca_system_score_gemma":0.000020517384,"threshold_uncertainty_score":0.5742343},"labels":[],"label_agreement":null},{"id":"W2098446935","doi":"10.1128/iai.00018-13","title":"Congenic Strains for Genetic Analysis of Virulence Traits in Cryptococcus gattii","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; China Scholarship Council","keywords":"Biology; Cryptococcus gattii; Virulence; Congenic; Cryptococcus; Microbiology; Genetics; Cryptococcosis; Virology; Gene","score_opus":0.027448492636355667,"score_gpt":0.3015393991735315,"score_spread":0.2740909065371758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098446935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99757236,0.00019927186,0.0008240063,0.00006389791,0.000050128405,0.00043752644,0.00001017372,0.000016454125,0.0008262011],"genre_scores_gemma":[0.9992013,0.00030717842,0.0002089044,0.000059369875,0.000012580378,0.00010618833,0.0000062223576,0.0000039977144,0.0000942865],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99952364,0.00003575861,0.00020455147,0.000091316935,0.000045264023,0.00009948389],"domain_scores_gemma":[0.99961156,0.00006957888,0.000049219372,0.00009663094,0.000136585,0.00003645279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010622752,0.00007132417,0.00024772945,0.00028771823,0.000083219034,0.000009694671,0.000015953428,0.00004889547,0.00020841623],"category_scores_gemma":[0.000095956966,0.000061270985,0.00010008216,0.00048255123,0.00007778512,0.000060239352,0.000013431003,0.00009923552,0.0000035936716],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038635826,0.00044871966,0.8970575,0.00014404132,0.0009777333,4.8728896e-7,0.0008230149,0.00016033814,0.05902201,0.00022870157,0.00013710845,0.04096171],"study_design_scores_gemma":[0.0006056529,0.0003130446,0.9954862,0.000018752437,0.00031541125,0.0000031114548,0.00012344593,0.0019814302,0.00073080754,0.00009908014,0.00026646664,0.000056581222],"about_ca_topic_score_codex":0.0026996795,"about_ca_topic_score_gemma":0.00093828986,"teacher_disagreement_score":0.09842871,"about_ca_system_score_codex":0.000023542321,"about_ca_system_score_gemma":0.000017896471,"threshold_uncertainty_score":0.40811256},"labels":[],"label_agreement":null},{"id":"W2098474651","doi":"10.1128/iai.68.1.54-63.2000","title":"Archaeosome Vaccine Adjuvants Induce Strong Humoral, Cell-Mediated, and Memory Responses: Comparison to Conventional Liposomes and Alum","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Adjuvant; Antigen; Biology; Immune system; Ovalbumin; Alum; Antibody; Liposome; Bovine serum albumin; Molecular biology; Immunology; Biochemistry; Chemistry","score_opus":0.019234944432606104,"score_gpt":0.2774875019069037,"score_spread":0.2582525574742976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098474651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98536855,0.012990898,0.000018767198,0.00033120427,0.0003518215,0.00032575507,0.000038098187,0.00008425855,0.00049063604],"genre_scores_gemma":[0.9911838,0.004077701,0.000028644934,0.00027664387,0.000025586198,0.000027723057,0.00008258467,0.000019671004,0.004277607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99820405,0.0007456597,0.00037997772,0.00029053513,0.000048112,0.000331682],"domain_scores_gemma":[0.9991637,0.00036751622,0.000097803146,0.00025106352,0.000060322996,0.000059628062],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004710334,0.0002526979,0.00038722952,0.00026064107,0.00064388337,0.000052465388,0.00009389131,0.00022829021,0.0014568483],"category_scores_gemma":[0.0000974457,0.00024096221,0.000051221967,0.00017201982,0.00027612486,0.0002509777,0.00011441999,0.00052292616,0.00016584093],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008726027,0.00084524974,0.06256826,0.000102011225,0.00041476198,0.000007832454,0.004980883,0.00000990825,0.7722763,0.000116907206,0.0018369006,0.14811495],"study_design_scores_gemma":[0.005267375,0.0014717528,0.83901566,0.000100054844,0.00005469419,0.00035219177,0.0009887666,0.000016749398,0.062225603,0.000056537254,0.090003416,0.0004471832],"about_ca_topic_score_codex":0.001094483,"about_ca_topic_score_gemma":0.000056480265,"teacher_disagreement_score":0.7764474,"about_ca_system_score_codex":0.000027301046,"about_ca_system_score_gemma":0.000049291484,"threshold_uncertainty_score":0.9994559},"labels":[],"label_agreement":null},{"id":"W2098602111","doi":"10.1128/iai.00033-09","title":"Identification of a Novel Lipopolysaccharide Core Biosynthesis Gene Cluster in <i>Bordetella pertussis</i> , and Influence of Core Structure and Lipid A Glucosamine Substitution on Endotoxic Activity","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Lipid A; Biology; Lipopolysaccharide; Glucosamine; Glycosyltransferase; Oligosaccharide; Gene cluster; Gene; Biosynthesis; Bacterial outer membrane; Bordetella pertussis; Biochemistry; Mutant; Bacteria; Genetics; Immunology","score_opus":0.018086830433778324,"score_gpt":0.25886386800859906,"score_spread":0.24077703757482075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098602111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991936,0.00018309402,0.0001029239,0.00005705554,0.00015731067,0.00022072133,0.00005850754,0.000018150171,0.000008615074],"genre_scores_gemma":[0.9991691,0.00072479097,0.000013578631,0.000033648423,0.000014034211,0.000004845217,0.000023238976,0.0000045957186,0.000012160621],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993034,0.00008708192,0.00029889317,0.00018056166,0.000018181967,0.000111852125],"domain_scores_gemma":[0.99936205,0.00012028716,0.0002256853,0.00017597358,0.00009885803,0.000017136981],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002020602,0.00014039823,0.00026987056,0.0002252131,0.00014104536,0.000014863071,0.00003832185,0.00020179372,0.000014704885],"category_scores_gemma":[0.00022032087,0.00012272297,0.00003102762,0.00016166738,0.00016991368,0.00019430793,0.000032972457,0.00020687295,5.626959e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031210965,0.0002446712,0.025300996,0.00003540959,0.000025327075,5.767302e-8,0.00015824843,0.000024789537,0.96464735,0.00025261063,0.0000014747478,0.008996954],"study_design_scores_gemma":[0.00072927517,0.0002009987,0.47871554,0.00003935145,0.000020186782,0.000038702885,0.000010366132,0.000051691703,0.52003,0.00004596126,0.000051369825,0.00006652348],"about_ca_topic_score_codex":0.0013596397,"about_ca_topic_score_gemma":0.0002961352,"teacher_disagreement_score":0.45341453,"about_ca_system_score_codex":0.000022394854,"about_ca_system_score_gemma":0.000019547751,"threshold_uncertainty_score":0.5004497},"labels":[],"label_agreement":null},{"id":"W2098699777","doi":"10.1128/iai.72.1.606-610.2004","title":"Acquisition of Host Plasmin Activity by the Swine Pathogen<i>Streptococcus suis</i>Serotype 2","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Natural Sciences and Engineering Research Council of Canada; Université Laval","funders":"","keywords":"Streptococcus suis; Plasmin; Microbiology; Biology; Streptokinase; Serotype; Urokinase; Pathogen; Virulence; Streptococcus dysgalactiae; Streptococcus pyogenes; Protease; Receptor; Virology; Biochemistry; Streptococcus; Enzyme; Streptococcus agalactiae; Bacteria; Staphylococcus aureus; Medicine","score_opus":0.01570057611017824,"score_gpt":0.27504063876297286,"score_spread":0.25934006265279463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098699777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924618,0.00013841077,0.00018242799,0.00009832143,0.00016051135,0.00052430574,0.00002868844,0.000044733722,0.006360819],"genre_scores_gemma":[0.99923533,0.00015664317,0.000016358345,0.000070081645,0.000022248722,0.00006380952,0.000029249928,0.000010281173,0.00039597432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992899,0.00016430383,0.00016671208,0.00013988282,0.00010201539,0.00013720983],"domain_scores_gemma":[0.9993508,0.00009333098,0.00010083383,0.00028182214,0.00010439407,0.00006885748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019948436,0.00013479053,0.00019076627,0.00006210767,0.00025740024,0.00001791233,0.000022571161,0.00009250955,0.00037181468],"category_scores_gemma":[0.00009623688,0.0000935959,0.000087193475,0.00025512849,0.0001174579,0.000102584236,0.000020538935,0.00021254648,0.000018284622],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009968504,0.0008280047,0.8313916,0.00003182573,0.00011774151,0.0000016505894,0.000072078896,0.0000013635351,0.1589649,0.00017672531,0.0005387318,0.007775696],"study_design_scores_gemma":[0.0013498047,0.0005038518,0.81492645,0.000031820226,0.00009452419,0.00006762044,0.000038211132,0.00001375823,0.17361918,0.00006228122,0.009209872,0.000082629806],"about_ca_topic_score_codex":0.0012558702,"about_ca_topic_score_gemma":0.00004877947,"teacher_disagreement_score":0.016465155,"about_ca_system_score_codex":0.000050772655,"about_ca_system_score_gemma":0.000035090998,"threshold_uncertainty_score":0.407111},"labels":[],"label_agreement":null},{"id":"W2098744730","doi":"10.1128/iai.68.3.1731-1734.2000","title":"Lipopolysaccharide Entry in the Damaged Cornea and Specific Uptake by Polymorphonuclear Neutrophils","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Ocular Surface and Contact Lens","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Cornea; Lipopolysaccharide; Fluorescein; Fluorescein isothiocyanate; Biology; Corneal epithelium; Staining; Epithelium; Infiltration (HVAC); Stromal cell; Molecular biology; Pathology; Microbiology; Immunology; Fluorescence; Medicine","score_opus":0.011522450715626194,"score_gpt":0.22989438289169203,"score_spread":0.21837193217606585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098744730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929799,0.0010755217,0.0000033464771,0.0008163181,0.000060801405,0.00016775227,0.0000037376399,0.000030465944,0.0048621977],"genre_scores_gemma":[0.99295264,0.005363214,0.000007178953,0.0009965285,0.0000421204,0.0000035994033,0.000010918109,0.000009067245,0.0006147347],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994081,0.00011877376,0.00013571815,0.000116646705,0.00008508597,0.00013566816],"domain_scores_gemma":[0.99965197,0.000033564622,0.00002373997,0.00022430868,0.000013687776,0.000052744217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020488472,0.00009725428,0.00013593103,0.0000452308,0.00015965445,0.000050104896,0.00003467033,0.000066169014,0.0006558919],"category_scores_gemma":[0.000012695415,0.00007298864,0.000033621054,0.00010770971,0.00006694267,0.00010265257,0.0000142370955,0.00036868107,0.000046079822],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008323294,0.00095120777,0.4660006,0.000067990055,0.00009995195,0.000078863595,0.003989992,0.0000023429257,0.2636499,0.0006672999,0.0031213893,0.26053813],"study_design_scores_gemma":[0.0012628968,0.00022538104,0.90720814,0.000031410367,0.000026128095,0.000077278964,0.000370014,0.00002311958,0.0022021616,0.000048306156,0.08842931,0.00009585296],"about_ca_topic_score_codex":0.0020334213,"about_ca_topic_score_gemma":0.00006547434,"teacher_disagreement_score":0.44120756,"about_ca_system_score_codex":0.000016575896,"about_ca_system_score_gemma":0.000011098412,"threshold_uncertainty_score":0.7181556},"labels":[],"label_agreement":null},{"id":"W2098851656","doi":"10.1128/iai.72.7.3968-3973.2004","title":"A Two-Component <i>covRS</i> Regulatory System Regulates Expression of Fructosyltransferase and a Novel Extracellular Carbohydrate in <i>Streptococcus mutans</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial Metabolites in Food Biotechnology","field":"Nursing","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus mutans; Biology; Extracellular; Microbiology; Biofilm; Carbohydrate; Component (thermodynamics); Biochemistry; Bacteria; Cell biology; Genetics","score_opus":0.008035417730001155,"score_gpt":0.22292941528884894,"score_spread":0.21489399755884778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098851656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99667746,0.0014602621,0.0005343495,0.000090590955,0.00048106635,0.00050406414,0.00002063293,0.00014975519,0.000081815124],"genre_scores_gemma":[0.99942607,0.00006167826,0.00039702625,0.000030976782,0.00002900123,0.000018831704,0.000009369162,0.000023836288,0.0000032175162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998643,0.00017699836,0.00050621683,0.00030860765,0.00011383533,0.00025137898],"domain_scores_gemma":[0.9992239,0.00004997161,0.00015963081,0.0004247396,0.00007345695,0.00006828961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038735857,0.00022831053,0.00038827214,0.0003116507,0.0001558051,0.0000277842,0.00009366958,0.0002693859,0.000004863194],"category_scores_gemma":[0.00005458131,0.00022526698,0.00005563201,0.00040684754,0.00030270006,0.00017310525,0.00007811976,0.0004397325,0.0000011714649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018003509,0.00021620619,0.0031168433,0.00023797134,0.00001202952,0.0000037056238,0.0005548353,0.00018806446,0.9933734,0.0011624095,0.000001583755,0.0009529057],"study_design_scores_gemma":[0.0027880706,0.00017949565,0.015361856,0.0005883215,0.000036060046,0.000094701645,0.00021518866,0.00007257891,0.97987705,0.00033706625,0.00023950216,0.00021010157],"about_ca_topic_score_codex":0.0028288355,"about_ca_topic_score_gemma":0.00018741311,"teacher_disagreement_score":0.013496353,"about_ca_system_score_codex":0.000120655786,"about_ca_system_score_gemma":0.000021633685,"threshold_uncertainty_score":0.9186121},"labels":[],"label_agreement":null},{"id":"W2098863862","doi":"10.1128/iai.71.1.494-503.2003","title":"Role of Avian Pathogenic <i>Escherichia coli</i> Virulence Factors in Bacterial Interaction with Chicken Heterophils and Macrophages","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; U.S. Department of Agriculture","keywords":"Virulence; Biology; Microbiology; Escherichia coli; Pathogenic Escherichia coli; Enterobacteriaceae; Virulence factor; Genetics; Gene","score_opus":0.01153753067547106,"score_gpt":0.24227574431579382,"score_spread":0.23073821364032276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098863862","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989373,0.00048712775,0.000013884315,0.000015020074,0.00004367766,0.00013263522,0.000009185323,0.0000069097828,0.00035424263],"genre_scores_gemma":[0.99745756,0.0023888343,0.000042855096,0.000020254856,0.000026989486,0.000013910377,0.000010894532,0.000008335387,0.000030388683],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994018,0.00013722651,0.00012459289,0.00014943781,0.00006196417,0.00012496892],"domain_scores_gemma":[0.99970806,0.000016251373,0.000060981733,0.00012833864,0.000045533652,0.000040832983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009384515,0.000108025815,0.0001248791,0.00004698291,0.00008894829,0.000023002603,0.000041109037,0.000067765235,0.00002309162],"category_scores_gemma":[0.00005914321,0.00009126084,0.000022300606,0.00009857695,0.00013101057,0.000016773876,0.00009030601,0.00015075148,7.1597344e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009350649,0.00007724458,0.13017228,0.000019541423,0.000025781053,3.8925316e-7,0.0002578425,0.0000027064984,0.8676485,0.0000019798317,0.000004423517,0.0016958242],"study_design_scores_gemma":[0.0006177482,0.0007232727,0.7878842,0.00002794251,0.000009252389,0.000008614137,0.00022271706,0.000085282416,0.20882301,0.0000107568385,0.001456547,0.00013067499],"about_ca_topic_score_codex":0.0006023282,"about_ca_topic_score_gemma":0.0005214122,"teacher_disagreement_score":0.65882546,"about_ca_system_score_codex":0.000010892973,"about_ca_system_score_gemma":0.000008675833,"threshold_uncertainty_score":0.3721509},"labels":[],"label_agreement":null},{"id":"W2098980327","doi":"10.1128/iai.01549-06","title":"Role of<scp>d</scp>-Alanylation of<i>Streptococcus gordonii</i>Lipoteichoic Acid in Innate and Adaptive Immunity","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipoteichoic acid; Biology; Streptococcus gordonii; Innate immune system; Acquired immune system; Immunity; Microbiology; Streptococcus; Immunology; Bacteria; Immune system; Genetics; Staphylococcus aureus","score_opus":0.008150995476471423,"score_gpt":0.23257301953014953,"score_spread":0.22442202405367812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098980327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99316335,0.0029522423,0.00026512513,0.000008642129,0.00015495069,0.0002816122,0.0000061407763,0.000033348824,0.003134573],"genre_scores_gemma":[0.99911743,0.0006308288,0.000025542453,0.000013169188,0.000009524199,0.000009061076,0.00004749024,0.000009346853,0.00013762977],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99861795,0.00045688273,0.00051689235,0.00014237763,0.000039834667,0.00022606763],"domain_scores_gemma":[0.99889046,0.00041159178,0.00030501516,0.00022849382,0.00014541848,0.000019030796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011934354,0.00015978617,0.0003014884,0.00039753364,0.00017009805,0.000009478635,0.0000709085,0.0002916898,0.000025769723],"category_scores_gemma":[0.00040396184,0.00015811631,0.00005723202,0.00032815713,0.00026843982,0.000289239,0.000098110504,0.00045663264,0.000013071901],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021458852,0.00012573553,0.08094389,0.0000290691,0.000069280504,3.827567e-7,0.0021989443,0.0000064051756,0.88424385,0.00055890006,0.000011353925,0.031597577],"study_design_scores_gemma":[0.0007774374,0.00022735346,0.5375548,0.00004080746,0.000015359617,0.0000140679085,0.000815233,0.000016170092,0.45822048,0.00026556957,0.002005213,0.000047468126],"about_ca_topic_score_codex":0.0027380704,"about_ca_topic_score_gemma":0.00034191975,"teacher_disagreement_score":0.45661095,"about_ca_system_score_codex":0.00003776457,"about_ca_system_score_gemma":0.00004278986,"threshold_uncertainty_score":0.64477956},"labels":[],"label_agreement":null},{"id":"W2099065204","doi":"10.1128/iai.72.8.4561-4569.2004","title":"Toll-Like Receptor 2 Represses Nonpilus Adhesin-Induced Signaling in Acute Infections with the <i>Pseudomonas aeruginosa pilA</i> Mutant","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"American Heart Association","keywords":"Bacterial adhesin; Biology; Microbiology; Pilus; Pseudomonas aeruginosa; Mutant; TLR2; Flagellin; Receptor; Immune system; Toll-like receptor; Innate immune system; Gene; Immunology; Virulence; Bacteria; Genetics","score_opus":0.010218589809950029,"score_gpt":0.23096838854008772,"score_spread":0.2207497987301377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099065204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99635714,0.00041324153,0.00036812425,0.0008760866,0.0005458604,0.00039698547,0.000004758991,0.0001253614,0.00091241824],"genre_scores_gemma":[0.99882406,0.0005488455,0.000024564795,0.0002294491,0.000027062575,0.000073773335,0.00005231483,0.000017154416,0.0002028049],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986149,0.00046787906,0.00032344763,0.0002390235,0.00005057368,0.00030418418],"domain_scores_gemma":[0.9991377,0.00019986035,0.00016267342,0.00037109948,0.00010684656,0.000021836564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004941965,0.00022530844,0.00025363208,0.00020369596,0.0007872113,0.000063556276,0.000111289344,0.00022287379,0.00010537901],"category_scores_gemma":[0.000083364874,0.00015997788,0.000071599454,0.00041671513,0.00019926466,0.00036438293,0.00007562164,0.00075998425,0.00013971899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044082315,0.00020874228,0.0021316754,0.000011670461,0.00016323532,0.000005551,0.0012643767,0.00012658241,0.9927373,0.0002190505,0.000095836534,0.0025951597],"study_design_scores_gemma":[0.0028107872,0.00074039714,0.02714169,0.000116062976,0.00008820704,0.0005198889,0.00051125133,0.0000023037655,0.94893354,0.00009974417,0.018738406,0.00029770247],"about_ca_topic_score_codex":0.0029479363,"about_ca_topic_score_gemma":0.00074945006,"teacher_disagreement_score":0.043803737,"about_ca_system_score_codex":0.000106860156,"about_ca_system_score_gemma":0.00014178093,"threshold_uncertainty_score":0.6523708},"labels":[],"label_agreement":null},{"id":"W2099197531","doi":"10.1128/iai.69.10.6515-6519.2001","title":"Cytotoxic Necrotizing Factor Type 1-Positive<i>Escherichia coli</i>Causes Increased Inflammation and Tissue Damage to the Prostate in a Rat Prostatitis Model","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Fondation pour la Recherche Médicale","keywords":"Prostatitis; Virulence; Biology; Escherichia coli; Virulence factor; Microbiology; Cytotoxic T cell; Inflammation; Prostate; Immunology; In vitro; Gene; Genetics; Cancer","score_opus":0.01616108335829345,"score_gpt":0.2855347197291125,"score_spread":0.269373636370819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099197531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806523,0.00017540938,0.00043982558,0.00031191175,0.00003485451,0.0006865555,0.000012276903,0.0000147926,0.00025913122],"genre_scores_gemma":[0.997643,0.0016008569,0.00017350107,0.00021254065,0.000033338405,0.000090205234,0.000029295683,0.000011911054,0.00020535428],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99923635,0.00020353442,0.00013530038,0.00016830975,0.00007920041,0.00017731864],"domain_scores_gemma":[0.99958867,0.000029754974,0.000042037213,0.00015491997,0.000121992445,0.000062640866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023197317,0.00012079737,0.00010705956,0.00005497842,0.00025795412,0.00007875412,0.000043894288,0.00006111485,0.0000049433193],"category_scores_gemma":[0.00032605257,0.00009868167,0.000013091608,0.00023421038,0.00007925082,0.000022350305,0.00016382734,0.00016705382,0.000002721237],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016165938,0.00003277714,0.052315436,0.000022266768,0.000018682615,0.000002312642,0.0007199453,0.0001613521,0.9444241,0.000014009085,0.00006935892,0.002058109],"study_design_scores_gemma":[0.0008686449,0.00068680185,0.70969397,0.000049831266,0.000011142817,0.000014779336,0.00020304846,0.0026540132,0.27568966,0.000056412446,0.009822174,0.00024952492],"about_ca_topic_score_codex":0.0012936695,"about_ca_topic_score_gemma":0.003641332,"teacher_disagreement_score":0.66873443,"about_ca_system_score_codex":0.000023835377,"about_ca_system_score_gemma":0.000058423557,"threshold_uncertainty_score":0.40241215},"labels":[],"label_agreement":null},{"id":"W2099220645","doi":"10.1128/iai.72.6.3187-3194.2004","title":"Bacterial Superantigen-Treated Intestinal Epithelial Cells Upregulate Heat Shock Proteins 25 and 72 and Are Resistant to Oxidant Cytotoxicity","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Superantigen; Biology; Heat shock protein; p38 mitogen-activated protein kinases; Microbiology; Enterotoxin; Downregulation and upregulation; Cytotoxicity; Protein kinase A; Cell biology; Molecular biology; Kinase; Immunology; In vitro; Immune system; T cell; Escherichia coli; Biochemistry","score_opus":0.012782584619545007,"score_gpt":0.2566580584777284,"score_spread":0.24387547385818337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099220645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981252,0.00011641826,0.0006690292,0.0001619938,0.000056181238,0.0007108949,0.00004842598,0.000027007933,0.00008483125],"genre_scores_gemma":[0.9991133,0.0002778775,0.00025811477,0.000053694883,0.000099888515,0.000046923946,0.000028294173,0.000019162115,0.00010269387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988422,0.00019730008,0.00020306381,0.0003387259,0.0001135413,0.00030520986],"domain_scores_gemma":[0.9993605,0.000011705067,0.000027322312,0.0002672408,0.000121721445,0.0002115336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032153566,0.00019444611,0.00019052096,0.00008512431,0.00038312492,0.000103365695,0.00006612099,0.00016363568,0.000021204838],"category_scores_gemma":[0.00016034163,0.00017800588,0.00003535875,0.00011885056,0.00016214252,0.0000146931025,0.0002711435,0.00021482405,0.000005121495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054127764,0.00009646849,0.0037710434,0.00004907517,0.000024569632,0.0000070477395,0.00008285813,0.000013995591,0.9946801,0.00001121145,0.000013463473,0.0007088848],"study_design_scores_gemma":[0.0010494839,0.0009980669,0.13434836,0.00006209375,0.000007998618,0.000082536266,0.000025762638,0.000014614447,0.86157143,0.000037456506,0.0016154762,0.00018669608],"about_ca_topic_score_codex":0.004011508,"about_ca_topic_score_gemma":0.0011539215,"teacher_disagreement_score":0.13310865,"about_ca_system_score_codex":0.000040232153,"about_ca_system_score_gemma":0.0000700497,"threshold_uncertainty_score":0.7258869},"labels":[],"label_agreement":null},{"id":"W2099484936","doi":"10.1128/iai.68.1.239-246.2000","title":"Murine Immune Response to<i>Neisseria meningitidis</i>Group C Capsular Polysaccharide: Analysis of Monoclonal Antibodies Generated in Response to a Thymus-Independent Antigen and a Thymus-Dependent Toxoid Conjugate Vaccine","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Isotype; Toxoid; Biology; Monoclonal antibody; Antigen; Molecular biology; Antibody; Conjugate vaccine; Neisseria meningitidis; Immune system; Immunoglobulin G; Humoral immunity; Microbiology; Immunogenicity; Virology; Immunology; Immunization","score_opus":0.010445808193567744,"score_gpt":0.25715732496115645,"score_spread":0.2467115167675887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099484936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99695826,0.0015709437,0.000052421932,0.00034628567,0.00032942486,0.00050600583,0.00012134176,0.00008021255,0.000035130895],"genre_scores_gemma":[0.9974845,0.0017238109,0.000043304735,0.000099780744,0.000020218245,0.000052097243,0.0000903777,0.000023414108,0.00046249563],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9969867,0.0013163825,0.00077326904,0.0004686087,0.00004517821,0.0004098466],"domain_scores_gemma":[0.99888885,0.00021464705,0.00016435448,0.00047882687,0.0001594271,0.000093903625],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017350673,0.00034878662,0.0007942213,0.0012728141,0.00040046978,0.00007728551,0.00013714413,0.00025677774,0.0013938618],"category_scores_gemma":[0.00021405278,0.00032907413,0.00014083236,0.0012939288,0.00006791414,0.00023130886,0.00019220104,0.00036075377,0.000038489918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014914656,0.00032658773,0.04455868,0.000010653117,0.000795277,0.000004771891,0.0011636345,0.00027412406,0.9347138,0.00001607639,0.000019899691,0.0032018502],"study_design_scores_gemma":[0.0022727444,0.0009343011,0.8413418,0.000046871315,0.00022061012,0.00009397493,0.00019478948,0.000058519036,0.15115769,0.000012073048,0.0033543068,0.00031231422],"about_ca_topic_score_codex":0.015651252,"about_ca_topic_score_gemma":0.0024530801,"teacher_disagreement_score":0.79678315,"about_ca_system_score_codex":0.00007688,"about_ca_system_score_gemma":0.000056068027,"threshold_uncertainty_score":0.99991614},"labels":[],"label_agreement":null},{"id":"W2099488651","doi":"10.1128/iai.70.5.2591-2597.2002","title":"Enhanced Disease Severity in<i>Helicobacter pylori</i>-Infected Mice Deficient in Fas Signaling","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Biology; Helicobacter pylori; Fas ligand; Pathogenesis; Immune system; Apoptosis; Gastritis; Immunology; Splenocyte; Cytokine; Helicobacter; In vivo; Antigen; Ratón; Gastric mucosa; Internal medicine; Stomach; Programmed cell death; Medicine","score_opus":0.020272858837983028,"score_gpt":0.25268710867591293,"score_spread":0.2324142498379299,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099488651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974603,0.0002476016,0.00012704899,0.00065060076,0.00026177632,0.00033901894,0.000005698311,0.000099666526,0.0008082704],"genre_scores_gemma":[0.99835587,0.000603079,0.000024711959,0.00081277586,0.000039626433,0.000041553507,0.000017578597,0.000015625139,0.00008916654],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99863523,0.0002270666,0.0003797477,0.00027394915,0.00012362785,0.00036035306],"domain_scores_gemma":[0.99934745,0.000078252095,0.000078438,0.0002310905,0.00011318897,0.00015160751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024913874,0.0002085758,0.00032772453,0.00030704803,0.00012916468,0.00002135456,0.000042190273,0.00012291195,0.00013979475],"category_scores_gemma":[0.0003153745,0.00020240946,0.000061941944,0.0004945376,0.00012078572,0.00017490127,0.00008276526,0.0006945663,0.000049054594],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026501543,0.0007294299,0.9707274,0.000062816405,0.000058368027,0.000028122135,0.0012385831,0.000032291868,0.023927359,0.000005152084,0.00004615987,0.0028793318],"study_design_scores_gemma":[0.0024225875,0.0002023297,0.9937444,0.00014963702,0.000052134892,0.000024950152,0.00007624304,0.00051686616,0.002004202,0.000013718663,0.0006496938,0.00014326331],"about_ca_topic_score_codex":0.00082966994,"about_ca_topic_score_gemma":0.00059744884,"teacher_disagreement_score":0.023017002,"about_ca_system_score_codex":0.00017701443,"about_ca_system_score_gemma":0.00001849551,"threshold_uncertainty_score":0.8254018},"labels":[],"label_agreement":null},{"id":"W2099501614","doi":"10.1128/iai.71.5.2902-2906.2003","title":"Influence of Lewis Antigen Expression by<i>Helicobacter pylori</i>on Bacterial Internalization by Gastric Epithelial Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Helicobacter pylori; Antigen; Biology; Internalization; Microbiology; Mutant; Lipopolysaccharide; Molecular biology; Gene; Immunology; Cell; Biochemistry; Genetics","score_opus":0.009975803112330718,"score_gpt":0.24331718632566954,"score_spread":0.23334138321333883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099501614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785376,0.000068692025,0.0009052693,0.00007053959,0.00040906662,0.00024814298,0.000052974403,0.000054364667,0.00033717428],"genre_scores_gemma":[0.9983513,0.00097620394,0.000037842245,0.0003651139,0.00004580071,0.000013317091,0.000062772226,0.000019694375,0.00012800096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986841,0.00028974414,0.0003971038,0.0002286941,0.00016231365,0.0002380333],"domain_scores_gemma":[0.99918973,0.00005526324,0.00020789076,0.00024873225,0.00019411692,0.000104253944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021770355,0.00021279069,0.00032246,0.00014962489,0.00014335399,0.00001944086,0.000054294545,0.00016519908,0.0000911063],"category_scores_gemma":[0.00020425055,0.00018545518,0.000060544986,0.00020899298,0.0001545898,0.00019748948,0.000049848302,0.00035114744,0.000021811384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030440677,0.00024372262,0.20894335,0.000026247195,0.000076747245,9.5238795e-7,0.00020246868,0.000012044766,0.788102,0.0000047333774,0.00159879,0.00048456324],"study_design_scores_gemma":[0.0021402745,0.001095402,0.25285333,0.00012968681,0.00005639308,0.000034352746,0.000024316918,0.0000063677,0.7238561,0.000010243554,0.01967145,0.00012205904],"about_ca_topic_score_codex":0.00031492574,"about_ca_topic_score_gemma":0.000006562565,"teacher_disagreement_score":0.06424585,"about_ca_system_score_codex":0.000058068348,"about_ca_system_score_gemma":0.000020144782,"threshold_uncertainty_score":0.75626427},"labels":[],"label_agreement":null},{"id":"W2099557257","doi":"10.1128/iai.72.9.5181-5192.2004","title":"<i>Helicobacter pylori</i> Infection Targets Adherens Junction Regulatory Proteins and Results in Increased Rates of Migration in Human Gastric Epithelial Cells","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Adherens junction; Biology; Helicobacter pylori; Microbiology; Helicobacter Infections; Bacterial protein; Helicobacter; Immunology; Bacteria; Genetics; Cell; Cadherin","score_opus":0.015328166997335909,"score_gpt":0.25490377238210615,"score_spread":0.23957560538477024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099557257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985088,0.00006691755,0.000083661376,0.00026198826,0.00020123374,0.00067482545,0.000011085385,0.000050969033,0.00014048691],"genre_scores_gemma":[0.99910253,0.0005174878,0.00006711166,0.00009213968,0.000060286264,0.000052748943,0.00006648412,0.000015024902,0.000026200172],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985014,0.0002559061,0.00063524395,0.00025973207,0.00012186389,0.00022585108],"domain_scores_gemma":[0.999303,0.00003759139,0.00023584701,0.00019667785,0.00015349017,0.00007342464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060958066,0.00020231894,0.0003523822,0.0005531613,0.00013148513,0.000015757352,0.000021622353,0.00020873634,0.0000061996243],"category_scores_gemma":[0.00020289687,0.00019434681,0.00004510882,0.00044662415,0.00017890127,0.00027743675,0.000045518093,0.00051905465,0.0000032914638],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071968255,0.00041922287,0.6384381,0.00007336543,0.000047583326,0.0000037684238,0.0006815817,0.000045381,0.35873622,0.000012942723,0.000020734973,0.0008014279],"study_design_scores_gemma":[0.0066318857,0.0012710234,0.90000695,0.0001880362,0.000046315454,0.000037312682,0.000048925245,0.0000218096,0.09131952,0.00008815472,0.00023675218,0.00010333365],"about_ca_topic_score_codex":0.02957684,"about_ca_topic_score_gemma":0.01338255,"teacher_disagreement_score":0.26741672,"about_ca_system_score_codex":0.00019721316,"about_ca_system_score_gemma":0.000049419534,"threshold_uncertainty_score":0.9768853},"labels":[],"label_agreement":null},{"id":"W2099615351","doi":"10.1128/iai.01733-06","title":"High-Throughput mRNA Profiling Characterizes the Expression of Inflammatory Molecules in Sepsis Caused by <i>Burkholderia pseudomallei</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Burkholderia pseudomallei; Biology; Melioidosis; Burkholderia; Sepsis; Gene expression profiling; Microbiology; Profiling (computer programming); Computational biology; Gene expression; Virology; Bacteria; Immunology; Genetics; Gene","score_opus":0.013827842882098781,"score_gpt":0.2600472388214811,"score_spread":0.24621939593938233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099615351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99738216,0.00026535185,0.00073094806,0.00018010125,0.00035394603,0.00043423765,0.0000072795483,0.000065242,0.0005807098],"genre_scores_gemma":[0.99845535,0.0008902487,0.00022159124,0.00020645875,0.00007678236,0.000035691253,0.00003104663,0.000019543717,0.0000632954],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998888,0.00012356992,0.0004440696,0.00017555374,0.00014958349,0.00021919736],"domain_scores_gemma":[0.99921495,0.00010891457,0.00018110144,0.00031726318,0.00010414689,0.000073652125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007239813,0.00016849789,0.00028747297,0.00017927872,0.00020676602,0.000023636163,0.000050387745,0.00016063318,0.00007059522],"category_scores_gemma":[0.000109381064,0.00012469027,0.00007712271,0.0003243573,0.00014698567,0.00018126026,0.00006532864,0.00038432804,0.0000035432522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120173354,0.00023277588,0.10981323,0.00009401105,0.000027199076,0.0000030530014,0.00032117276,0.0000038352214,0.88615686,0.000078129146,0.0001646909,0.0029848828],"study_design_scores_gemma":[0.0011348554,0.00013702305,0.41183326,0.00011465439,0.000030919757,0.0000145818485,0.00020483992,0.000015399924,0.58364356,0.000021263293,0.0027550627,0.000094627365],"about_ca_topic_score_codex":0.0014776262,"about_ca_topic_score_gemma":0.00009328953,"teacher_disagreement_score":0.30251333,"about_ca_system_score_codex":0.000052107123,"about_ca_system_score_gemma":0.00004016446,"threshold_uncertainty_score":0.50847214},"labels":[],"label_agreement":null},{"id":"W2099670654","doi":"10.1128/iai.72.11.6271-6278.2004","title":"Differential Expression of Porins OmpP2A and OmpP2B of <i>Haemophilus ducreyi</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Ohio State University","keywords":"Haemophilus ducreyi; Porin; Biology; Bacterial outer membrane; Gene; Microbiology; Virulence; Western blot; Molecular biology; Haemophilus influenzae; Sexually transmitted disease; Pathogen; Virology; Pasteurellaceae; Bacteria; Genetics; Escherichia coli","score_opus":0.01968370772676631,"score_gpt":0.2737596133392934,"score_spread":0.2540759056125271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099670654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984385,0.0003280269,0.000059107424,0.00015332145,0.00010207641,0.00014348651,0.000005870991,0.00001616817,0.0007534804],"genre_scores_gemma":[0.9987041,0.0011371095,0.000059704944,0.00002778462,0.000029665196,0.0000063560205,0.000011904186,0.000005606646,0.00001779773],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995628,0.000026089148,0.00016938483,0.000088605186,0.00008619296,0.00006694018],"domain_scores_gemma":[0.99963695,0.000028921886,0.00007849381,0.00014417735,0.000055676104,0.000055777582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004538485,0.000080830665,0.00021215572,0.000070356,0.000057758738,0.000004463341,0.000013491349,0.00005435455,0.000052513184],"category_scores_gemma":[0.000031734635,0.00006182334,0.000047955586,0.00006682302,0.00008779395,0.000051166622,0.00003778695,0.00008365263,9.0770135e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032192023,0.002830058,0.6941765,0.00030755697,0.00012734122,0.0000072690164,0.0009484426,0.0000074259524,0.2839307,0.0011248931,0.000057512163,0.016160402],"study_design_scores_gemma":[0.0022239713,0.00045705002,0.71219116,0.00015960551,0.000059489048,0.000038208313,0.000035715766,0.0000021560907,0.28436962,0.00020532498,0.00021702402,0.00004071136],"about_ca_topic_score_codex":0.001368727,"about_ca_topic_score_gemma":0.000024005492,"teacher_disagreement_score":0.01801464,"about_ca_system_score_codex":0.000022024691,"about_ca_system_score_gemma":0.000018233,"threshold_uncertainty_score":0.25210825},"labels":[],"label_agreement":null},{"id":"W2099801025","doi":"10.1128/iai.70.12.7004-7012.2002","title":"Virulence Criteria for<i>Brucella abortus</i>Strains as Determined by Interferon Regulatory Factor 1-Deficient Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Cooperative State Research, Education, and Extension Service; National Institutes of Health; U.S. Department of Agriculture; United States - Israel Binational Agricultural Research and Development Fund; University of Toronto","keywords":"Virulence; Brucella; Biology; Brucellaceae; Microbiology; Immunity; Brucellosis; Virology; IRF1; Attenuated vaccine; Interferon; Virulence factor; Immunology; Immune system; Brucella melitensis; Gene; Gene expression; Genetics","score_opus":0.09362883723357572,"score_gpt":0.3548829075615946,"score_spread":0.26125407032801884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099801025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950914,0.0010902311,0.00033544967,0.00027891345,0.00077056215,0.0005321489,0.00012627269,0.00019422847,0.0015808005],"genre_scores_gemma":[0.99731535,0.0010572483,0.0001527859,0.00067086995,0.00007205533,0.00015577479,0.000050605064,0.000036938825,0.0004883739],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981215,0.0004449591,0.00048381079,0.00043893795,0.000107910346,0.00040290877],"domain_scores_gemma":[0.9986527,0.00039990342,0.00020665345,0.0004914253,0.00009199099,0.0001573456],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00036493503,0.00032806772,0.00037041542,0.00011498025,0.00037283314,0.00006267541,0.00014592527,0.0002481071,0.0009974303],"category_scores_gemma":[0.0002726105,0.00032062395,0.00015095956,0.000112547124,0.00019846945,0.00019820858,0.00010554038,0.00028388435,0.0001645759],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086669606,0.0030272156,0.0478172,0.0003724887,0.00037157163,0.000036938916,0.004239498,0.0000103293205,0.8190992,0.0002917967,0.059694756,0.064172335],"study_design_scores_gemma":[0.0061958623,0.01323942,0.67165387,0.00037659725,0.00029684257,0.0008608509,0.0005347937,0.004931198,0.09443505,0.0007167007,0.20471886,0.0020399778],"about_ca_topic_score_codex":0.0015729547,"about_ca_topic_score_gemma":0.000094012146,"teacher_disagreement_score":0.72466415,"about_ca_system_score_codex":0.00020357099,"about_ca_system_score_gemma":0.0000142038,"threshold_uncertainty_score":0.9999246},"labels":[],"label_agreement":null},{"id":"W2099809645","doi":"10.1128/iai.68.2.931-936.2000","title":"Functional Conservation of the Polysaccharide Biosynthetic Protein WbpM and Its Homologues in <i>Pseudomonas aeruginosa</i> and Other Medically Significant Bacteria","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Toronto General Hospital; University of Toronto","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Subfamily; Microbiology; Bacteria; Mutant; Gene; Amino acid; Biochemistry; Genetics","score_opus":0.010691961603918304,"score_gpt":0.2079529758804972,"score_spread":0.19726101427657888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099809645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987732,0.00023863313,0.000008863492,0.00062746863,0.00005979103,0.00018442224,0.000018996378,0.0000063777493,0.00008224521],"genre_scores_gemma":[0.99903387,0.0005940503,0.00002396533,0.00018632472,0.000024944542,0.000012158333,0.000008842651,0.000005683575,0.000110187204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944943,0.000109831664,0.00016046378,0.00014468844,0.000044018605,0.00009156971],"domain_scores_gemma":[0.9997572,0.00000988761,0.000056702705,0.00012101065,0.000028782619,0.000026417176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001741851,0.00008749935,0.000098165896,0.000033302993,0.000074604664,0.000013262675,0.000043512904,0.00017971422,0.00007276158],"category_scores_gemma":[0.000048929094,0.00006586796,0.000018961782,0.000070247756,0.00022230289,0.000004291211,0.00006298017,0.00010691871,8.009084e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007630153,0.00004485297,0.009542583,0.000013620569,0.000011833712,1.0407495e-7,0.000022186863,3.5616912e-7,0.9859731,0.00008430575,0.000019493842,0.004211248],"study_design_scores_gemma":[0.00042311306,0.00019649521,0.2940006,0.000025624022,0.000008533595,0.000031226176,0.000014409898,0.000022812672,0.69833136,0.00013492168,0.006724368,0.000086568434],"about_ca_topic_score_codex":0.00053675676,"about_ca_topic_score_gemma":0.00022411691,"teacher_disagreement_score":0.28764176,"about_ca_system_score_codex":0.0000038487833,"about_ca_system_score_gemma":0.000028515355,"threshold_uncertainty_score":0.26860175},"labels":[],"label_agreement":null},{"id":"W2099925167","doi":"10.1128/iai.01581-06","title":"<i>Burkholderia cenocepacia</i> Requires a Periplasmic HtrA Protease for Growth under Thermal and Osmotic Stress and for Survival In Vivo","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Calgary","funders":"Department of Education of Guangdong Province","keywords":"Biology; Periplasmic space; Operon; Burkholderia cenocepacia; Complementation; Microbiology; Virulence; Proteases; Molecular biology; Gene; Mutant; Genetics; Escherichia coli; Biochemistry","score_opus":0.022854225717955725,"score_gpt":0.29935047200935616,"score_spread":0.27649624629140046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099925167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975746,0.00027788803,0.0011666367,0.00009511871,0.000076557546,0.0006159597,0.000051044328,0.000008839541,0.00013334794],"genre_scores_gemma":[0.9991917,0.0004137307,0.00011719854,0.00004633994,0.000066510314,0.000070208116,0.000023717785,0.000012310597,0.000058285073],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99936336,0.00006082281,0.00012827922,0.00018379853,0.000043918826,0.00021984629],"domain_scores_gemma":[0.9996754,0.000057634512,0.00003733596,0.00009383125,0.00007645033,0.000059354003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040931616,0.00011437623,0.00012492057,0.000050145834,0.00019941627,0.000045635457,0.0000315254,0.00008861659,0.0000030410022],"category_scores_gemma":[0.00019682063,0.00010507127,0.000027359645,0.000043033826,0.00015454307,0.000013859437,0.000085106934,0.00007570504,6.9316464e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063044525,0.00009154775,0.06257415,0.00024356476,0.0000525237,5.447022e-7,0.00020181632,0.0000019413,0.9345033,0.000105652856,0.000039376748,0.0015551508],"study_design_scores_gemma":[0.002974719,0.001004321,0.5708647,0.000047400616,0.0000208077,0.000012217311,0.00053441845,0.000059773924,0.42217845,0.00032746134,0.0017247786,0.00025098838],"about_ca_topic_score_codex":0.00044447763,"about_ca_topic_score_gemma":0.0009948151,"teacher_disagreement_score":0.5123248,"about_ca_system_score_codex":0.000013402722,"about_ca_system_score_gemma":0.000028311933,"threshold_uncertainty_score":0.4284682},"labels":[],"label_agreement":null},{"id":"W2100052670","doi":"10.1128/iai.01377-12","title":"Impact of the Listeria monocytogenes Protein InlC on Infection in Mice","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Marsden Fund; National Institutes of Health; Royal Society Te Apārangi; National Institute of Allergy and Infectious Diseases; Royal Society","keywords":"Listeria monocytogenes; Biology; Microbiology; Mutant; Virulence; Strain (injury); Pathogen; Wild type; Internalization; Listeria; Bacteria; Cell; Gene; Genetics","score_opus":0.04469366424346747,"score_gpt":0.32123697960818975,"score_spread":0.27654331536472226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100052670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843293,0.000054519216,0.000036430072,0.000026258727,0.00017547978,0.00040658173,0.0000042363135,0.000008279356,0.00085528777],"genre_scores_gemma":[0.99958104,0.00013137508,0.00001628528,0.00004500453,0.000045195688,0.000058033595,0.000011693883,0.000010742653,0.00010063754],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99928856,0.00020720222,0.00019159116,0.00014367413,0.000053030933,0.00011596265],"domain_scores_gemma":[0.999484,0.000007923715,0.00010301723,0.00031089317,0.00006593287,0.000028233968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013914086,0.000120339515,0.00010750039,0.000052217045,0.00008262344,0.000024853767,0.00007862359,0.00012826752,0.000030437937],"category_scores_gemma":[0.000086316184,0.00008721258,0.000089156565,0.00013067828,0.00008145197,0.000013641416,0.00017182581,0.000111913425,0.0000055847345],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007457183,0.00008497546,0.29371896,0.000014139265,0.000022736105,4.6946823e-8,0.000039421706,0.0000790531,0.70340806,0.000010899198,0.00003423938,0.0025129137],"study_design_scores_gemma":[0.000289015,0.00037589076,0.6879589,0.000018074354,0.0000033242065,0.000006689883,0.0000043400255,0.000024596304,0.31078857,0.00005021172,0.00040691122,0.000073440126],"about_ca_topic_score_codex":0.007624337,"about_ca_topic_score_gemma":0.0004789191,"teacher_disagreement_score":0.39423996,"about_ca_system_score_codex":0.000045309956,"about_ca_system_score_gemma":0.000039855797,"threshold_uncertainty_score":0.998984},"labels":[],"label_agreement":null},{"id":"W2100059937","doi":"10.1128/iai.72.6.3536-3542.2004","title":"Role of CD8 <sup>+</sup> and CD4 <sup>+</sup> T Lymphocytes in Jejunal Mucosal Injury during Murine Giardiasis","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology","keywords":"Intraepithelial lymphocyte; Biology; Disaccharidase; CD8; Brush border; Crypt; Malabsorption; Ileum; Intestinal mucosa; Adoptive cell transfer; Jejunum; Immunology; T cell; Small intestine; Internal medicine; Endocrinology; Immune system; Medicine; Biochemistry","score_opus":0.006115995954166183,"score_gpt":0.2330349648232039,"score_spread":0.22691896886903773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100059937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966984,0.0013542539,0.000056745426,0.000042658226,0.00013222828,0.00020121718,0.000050899307,0.00007423602,0.001389409],"genre_scores_gemma":[0.9983548,0.001339281,0.000053581767,0.000057067256,0.000038744198,0.000027135704,0.00005029216,0.000016854094,0.00006223861],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99871767,0.00023440039,0.00041128855,0.00025056867,0.00004333371,0.00034276163],"domain_scores_gemma":[0.9992734,0.00021418156,0.00010866232,0.00025987512,0.00009580143,0.000048036076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030251165,0.00023801533,0.0003734414,0.0003778629,0.00038404568,0.000027080076,0.000072140116,0.00031168343,0.00022807992],"category_scores_gemma":[0.00030851283,0.00024007658,0.0000873496,0.00029650508,0.0003559086,0.0002260184,0.00013938088,0.00044879699,0.00006041794],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006671018,0.0016299314,0.7836885,0.00021025106,0.00050662557,0.000013325085,0.0045157,0.0066703903,0.18559487,0.0024033175,0.00012442656,0.013975544],"study_design_scores_gemma":[0.0060836608,0.00056270976,0.803102,0.00017885704,0.00011308936,0.00054048985,0.0012974922,0.00019576996,0.18418737,0.0011620381,0.002115005,0.00046152575],"about_ca_topic_score_codex":0.0067689787,"about_ca_topic_score_gemma":0.00013398392,"teacher_disagreement_score":0.019413477,"about_ca_system_score_codex":0.00013053617,"about_ca_system_score_gemma":0.000103485225,"threshold_uncertainty_score":0.999845},"labels":[],"label_agreement":null},{"id":"W2100246023","doi":"10.1128/iai.00341-08","title":"Enhanced Innate Immune Responsiveness to Pulmonary<i>Cryptococcus neoformans</i>Infection Is Associated with Resistance to Progressive Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University; Burroughs Wellcome Fund","keywords":"CXCL1; Biology; Cryptococcus neoformans; Chemokine; Immunology; Cytokine; Tumor necrosis factor alpha; Innate immune system; CXCL2; Immune system; CCL3; Microbiology; CCL2; Chemokine receptor","score_opus":0.018241412650840286,"score_gpt":0.2766039992844581,"score_spread":0.25836258663361783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100246023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893687,0.00018207838,0.001861456,0.00054322014,0.00041981888,0.0014428308,0.00001337411,0.00032003745,0.005848512],"genre_scores_gemma":[0.9953667,0.0006391803,0.00008819217,0.00066846376,0.000092841445,0.00046646624,0.000033784,0.00003795087,0.002606434],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99824864,0.00021517285,0.0004293242,0.0004021443,0.000285418,0.000419332],"domain_scores_gemma":[0.99818194,0.00010450935,0.00019479828,0.0003696662,0.0009220218,0.000227072],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00041405743,0.0003408871,0.00050946244,0.0005166717,0.0014421379,0.000052540912,0.000041528263,0.00018278354,0.0000893354],"category_scores_gemma":[0.00051485584,0.0002941352,0.00011801886,0.0016113356,0.0001633577,0.00036084442,0.00010086102,0.00052263046,0.00006910148],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012349528,0.0034414306,0.6923736,0.00053715304,0.0015164365,0.00022390667,0.011250144,0.0004325926,0.25258356,0.00025538245,0.004827454,0.020208856],"study_design_scores_gemma":[0.0012141647,0.0018367916,0.9273179,0.0005128494,0.00009477858,0.00025333127,0.00005058032,0.000027350588,0.054905027,0.000030421008,0.013400544,0.0003562412],"about_ca_topic_score_codex":0.002231749,"about_ca_topic_score_gemma":0.0009671377,"teacher_disagreement_score":0.23494437,"about_ca_system_score_codex":0.0003772706,"about_ca_system_score_gemma":0.00012084587,"threshold_uncertainty_score":0.99995106},"labels":[],"label_agreement":null},{"id":"W2100339690","doi":"10.1128/iai.00297-08","title":"Host-Pathogen Interactions of<i>Actinobacillus pleuropneumoniae</i>with Porcine Lung and Tracheal Epithelial Cells","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; McGill University; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Actinobacillus pleuropneumoniae; Biology; Bacterial adhesin; Microbiology; Pathogen; Pasteurellaceae; Gene; Haemophilus influenzae; Virulence; Serotype; Genetics","score_opus":0.011514994288397955,"score_gpt":0.26366731160356743,"score_spread":0.25215231731516946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100339690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967952,0.0005326999,0.00040657038,0.00014922132,0.00021438165,0.00020907196,0.00009025818,0.000054511787,0.0015481099],"genre_scores_gemma":[0.9988794,0.00053298095,0.00002125311,0.00007380053,0.000024028237,0.0000057482903,0.00004415099,0.00000818404,0.00041045249],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912864,0.00023357118,0.00021523428,0.00018261137,0.000029112214,0.00021083397],"domain_scores_gemma":[0.99946094,0.000087030305,0.00009225015,0.00018548638,0.00012335868,0.000050922004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019732647,0.00014628159,0.00021467033,0.00017494905,0.0003862395,0.000028493114,0.000043372664,0.000099083576,0.0002733164],"category_scores_gemma":[0.000036650035,0.00012044057,0.000054936347,0.00018597534,0.0001933025,0.00017097105,0.00004041409,0.00040881537,0.000022884404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002292108,0.00030162677,0.0062446026,0.00002465314,0.000066467044,0.0000024485785,0.00021775896,0.000003904577,0.9837916,0.00016341958,0.00015108062,0.008803263],"study_design_scores_gemma":[0.0030644448,0.0017001544,0.43185312,0.0000662777,0.00018072582,0.0010349914,0.00026149044,0.000055015862,0.53952074,0.00008506729,0.021775989,0.000401982],"about_ca_topic_score_codex":0.0011795366,"about_ca_topic_score_gemma":0.000098289194,"teacher_disagreement_score":0.44427082,"about_ca_system_score_codex":0.000026526128,"about_ca_system_score_gemma":0.000039806513,"threshold_uncertainty_score":0.4911424},"labels":[],"label_agreement":null},{"id":"W2100539738","doi":"10.1128/iai.00655-13","title":"CD4 <sup>+</sup> T Cells Drive Goblet Cell Depletion during Citrobacter rodentium Infection","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Goblet cell; Biology; CD8; Immunology; Cell growth; T cell; Immune system; Microbiology; Epithelium","score_opus":0.0066630389787724845,"score_gpt":0.22642943516642372,"score_spread":0.21976639618765123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100539738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967348,0.00011229246,0.00046233166,0.000058031797,0.00013689657,0.0003073802,0.000003236115,0.00004173969,0.00214329],"genre_scores_gemma":[0.99639994,0.0017741297,0.00007562693,0.00008376363,0.00015545354,0.000087504115,0.000043983655,0.00001873448,0.0013608772],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99899584,0.00020486471,0.00017346292,0.00024738093,0.00011170578,0.00026673218],"domain_scores_gemma":[0.99937236,0.000014935781,0.00007094346,0.00026131567,0.0001953695,0.00008507757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017042144,0.00016767532,0.00012783852,0.00008272845,0.00038510593,0.00010084153,0.000060028946,0.00014953075,0.00011921138],"category_scores_gemma":[0.00006868392,0.0001639727,0.00007783903,0.00013194789,0.000095394185,0.000032077023,0.00022749539,0.00026415667,0.000102599326],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027049597,0.00012210311,0.113342084,0.00006852085,0.000051920564,3.9921866e-7,0.00011540279,0.00018276491,0.8845388,0.0000030759568,0.00090598565,0.00064186915],"study_design_scores_gemma":[0.0007358369,0.00027858213,0.597048,0.000015512765,0.000019307252,0.0000109692855,0.00007539443,0.0004101873,0.39124724,0.000034860328,0.009881689,0.00024240595],"about_ca_topic_score_codex":0.0027604527,"about_ca_topic_score_gemma":0.000160447,"teacher_disagreement_score":0.4932916,"about_ca_system_score_codex":0.000040470062,"about_ca_system_score_gemma":0.00002409269,"threshold_uncertainty_score":0.66866124},"labels":[],"label_agreement":null},{"id":"W2100580791","doi":"10.1128/iai.00882-09","title":"Role of RpoS in Virulence of Pathogens","year":2009,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"rpoS; Virulence; Biology; Microbiology; Regulator; Genetics; Gene; Gene expression","score_opus":0.013760531325803772,"score_gpt":0.27648567078482955,"score_spread":0.26272513945902576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100580791","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12543046,0.8740839,0.0000055451474,0.000001615972,0.00005192105,0.00015365484,0.000028757127,0.0000030965882,0.00024107078],"genre_scores_gemma":[0.042390086,0.95745724,0.000039480674,0.0000046364116,0.000022993281,0.000005719765,0.000060338112,0.0000069488237,0.0000125437255],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993359,0.000104244,0.0003086087,0.00013506312,0.000030587616,0.00008559777],"domain_scores_gemma":[0.9994872,0.000006349329,0.00020734787,0.0002454338,0.000037007594,0.000016630094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013317452,0.00012688342,0.00043904284,0.000101523234,0.000016237409,0.000003248694,0.000086689965,0.00046495357,0.0000059442236],"category_scores_gemma":[0.000038005623,0.00011217646,0.00010827473,0.00012397452,0.0000831816,0.000001060781,0.00009007608,0.00015375706,7.0314644e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000064375345,0.00006773684,0.000089688976,0.00056627276,0.000019642228,1.2324888e-7,0.0000054653424,1.6666145e-7,0.14541438,0.000024715342,0.0000029564035,0.8538024],"study_design_scores_gemma":[0.00015879702,0.0005537203,0.002456166,0.0008911938,0.00007175289,0.000025005827,0.0000070650767,9.909918e-7,0.03740885,0.00008146743,0.958168,0.00017697048],"about_ca_topic_score_codex":0.00015089409,"about_ca_topic_score_gemma":0.00006549994,"teacher_disagreement_score":0.95816505,"about_ca_system_score_codex":0.0000056977206,"about_ca_system_score_gemma":0.00005387112,"threshold_uncertainty_score":0.45744234},"labels":[],"label_agreement":null},{"id":"W2100612552","doi":"10.1128/iai.69.6.3791-3799.2001","title":"Variance in Fibronectin Binding and <i>fnb</i> Locus Polymorphisms in <i>Staphylococcus aureus</i> : Identification of Antigenic Variation in a Fibronectin Binding Protein Adhesin of the Epidemic CMRSA-1 Strain of Methicillin-Resistant <i>S. aureus</i>","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's College Hospital; University of Toronto; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Bacterial adhesin; Antigenic variation; Genetics; Gene; Locus (genetics); Staphylococcus aureus; Genetic variation; Virulence; Bacteria","score_opus":0.018380649252613485,"score_gpt":0.2701453707782382,"score_spread":0.2517647215256247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100612552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967144,0.0006288866,0.00064160273,0.00026486925,0.00011778481,0.0014285891,0.0000719294,0.000022589957,0.000109329856],"genre_scores_gemma":[0.9988424,0.0006611997,0.00027882683,0.00002692841,0.000018010605,0.000039587267,0.000014508098,0.000029553854,0.00008895444],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.996431,0.00080940477,0.0016254911,0.00041916926,0.0003380636,0.0003768806],"domain_scores_gemma":[0.9976703,0.00044877382,0.0011102298,0.0005344027,0.00017114061,0.00006515074],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0029974168,0.00029285427,0.00077738677,0.0008160776,0.000119266915,0.000021452553,0.00016716833,0.00032793556,0.000023898476],"category_scores_gemma":[0.0014279715,0.000270716,0.00012801458,0.0022474558,0.00034569274,0.00028968044,0.00010950128,0.00080661225,0.0000010223885],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005984659,0.00030769783,0.16743469,0.00039561465,0.00003033207,0.0000039987754,0.00089195906,0.00012865844,0.8291498,0.00020625797,0.0000075393436,0.00084499246],"study_design_scores_gemma":[0.0018753838,0.00018429647,0.5820691,0.0015507775,0.00004215367,0.000006551442,0.000262634,0.00020167808,0.41330937,0.00026360893,0.000054712003,0.00017974853],"about_ca_topic_score_codex":0.0094701,"about_ca_topic_score_gemma":0.0034162828,"teacher_disagreement_score":0.41584045,"about_ca_system_score_codex":0.00026459518,"about_ca_system_score_gemma":0.00024250602,"threshold_uncertainty_score":0.9999745},"labels":[],"label_agreement":null},{"id":"W2100613007","doi":"10.1128/iai.01028-13","title":"Low-Dose Intradermal Infection with Trypanosoma congolense Leads to Expansion of Regulatory T Cells and Enhanced Susceptibility to Reinfection","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Manitoba Health Research Council","keywords":"Immunology; Biology; FOXP3; Intradermal injection; Lymph; IL-2 receptor; Parasitemia; Interferon gamma; Tumor necrosis factor alpha; Cytokine; Spleen; Immune system; Lymph node; Medicine; T cell; Pathology; Plasmodium falciparum","score_opus":0.013360368910805132,"score_gpt":0.2727073880813217,"score_spread":0.2593470191705166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100613007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99538594,0.000016488633,0.0020306455,0.00038753406,0.00010259154,0.0013210627,0.000006455637,0.000096836346,0.0006524247],"genre_scores_gemma":[0.9989327,0.00014384453,0.00024654434,0.00023803524,0.00006101669,0.00012320305,0.000013401983,0.00001836696,0.00022284537],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987515,0.00015592453,0.00031114547,0.00030638062,0.00021640294,0.00025864274],"domain_scores_gemma":[0.9985657,0.00006640017,0.000084504296,0.00046295865,0.00044083435,0.00037960967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000067268404,0.0001800173,0.00028686848,0.00030601386,0.00023730625,0.000048903283,0.00003299755,0.00012808372,0.00018876306],"category_scores_gemma":[0.00020036912,0.0001540663,0.000048541246,0.0005070438,0.00020125754,0.00033976382,0.000077669654,0.00030943946,0.00004959753],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000312303,0.00022777625,0.021229347,0.00014108371,0.000024891375,3.74131e-7,0.00034852535,0.00001817925,0.96022284,0.00006110643,0.00029937283,0.017114202],"study_design_scores_gemma":[0.00068352465,0.0014911349,0.59561205,0.00007659672,0.000015973708,0.000036434565,0.00005188404,0.000030733492,0.40160093,0.000015278925,0.00029111013,0.00009435331],"about_ca_topic_score_codex":0.0030186945,"about_ca_topic_score_gemma":0.0003465015,"teacher_disagreement_score":0.57438266,"about_ca_system_score_codex":0.000112502545,"about_ca_system_score_gemma":0.00008533682,"threshold_uncertainty_score":0.6282641},"labels":[],"label_agreement":null},{"id":"W2100912336","doi":"10.1128/iai.00455-13","title":"Escherichia coli Heat-Stable Toxin b Impairs Intestinal Epithelial Barrier Function by Altering Tight Junction Proteins","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Research Centre","keywords":"Biology; Escherichia coli; Tight junction; Escherichia coli Proteins; Microbiology; Toxin; Barrier function; Enterobacteriaceae; Function (biology); Microbial toxins; Bacterial protein; Cell biology; Bacteria; Biochemistry; Genetics; Gene","score_opus":0.01545756318614321,"score_gpt":0.22683836591473622,"score_spread":0.211380802728593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100912336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98108804,0.00008561788,0.011633287,0.00014481012,0.0015530712,0.0004895395,0.000009929068,0.00025781468,0.00473787],"genre_scores_gemma":[0.99751276,0.00009025736,0.00006722003,0.0006786427,0.00016638538,0.00015627709,0.0000065142085,0.000019419063,0.0013025409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874026,0.000216916,0.00026120257,0.0003234531,0.00017127772,0.0002868903],"domain_scores_gemma":[0.9993889,0.00007384238,0.00008426082,0.0002160349,0.00010658157,0.0001303844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014680113,0.0002232044,0.0001931895,0.00010533655,0.0009945452,0.00018883673,0.00006327936,0.00010427704,0.0007868358],"category_scores_gemma":[0.0002905764,0.00019323385,0.00006210078,0.00034233142,0.0001694543,0.00076451607,0.00009692348,0.0004304174,0.00010976053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008191973,0.000055773693,0.003532666,0.000021334832,0.000014165876,3.630558e-7,0.0002267677,0.000011410225,0.9867497,0.00012218188,0.0027717622,0.006411954],"study_design_scores_gemma":[0.0013433249,0.001184822,0.11198708,0.000045131306,0.00005780033,0.000082213104,0.0004808034,0.0015073919,0.77512693,0.0013423976,0.10623907,0.0006030072],"about_ca_topic_score_codex":0.0032034074,"about_ca_topic_score_gemma":0.000053829284,"teacher_disagreement_score":0.21162274,"about_ca_system_score_codex":0.000066820794,"about_ca_system_score_gemma":0.000029572679,"threshold_uncertainty_score":0.86153},"labels":[],"label_agreement":null},{"id":"W2101157845","doi":"10.1128/iai.00024-07","title":"Gamma Interferon Responses of CD4 and CD8 T-Cell Subsets Are Quantitatively Different and Independent of Each Other during Pulmonary<i>Mycobacterium bovis</i>BCG Infection","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; National Institutes of Health; Colorado State University","keywords":"Mycobacterium bovis; Biology; Interferon gamma; CD8; Microbiology; Virology; Immunology; Mycobacterium; Interferon; BCG vaccine; Mycobacterium tuberculosis; Immune system; Tuberculosis; Bacteria; Vaccination; Pathology; Medicine; Genetics","score_opus":0.03472312067009873,"score_gpt":0.32473190756695164,"score_spread":0.2900087868968529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101157845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984991,0.0005101762,0.00016612638,0.00011073402,0.00008114394,0.00023080436,0.000012302276,0.000022626695,0.00036700975],"genre_scores_gemma":[0.99745655,0.0023072385,0.000018127304,0.000043964053,0.000028509023,0.0000060841285,0.0000093033805,0.000012631669,0.000117581214],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99872977,0.00038672847,0.00036816555,0.00018099567,0.00012307685,0.00021128388],"domain_scores_gemma":[0.9991036,0.00029080632,0.00019334392,0.00015612612,0.00012751958,0.00012861573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083097734,0.00014713316,0.0003728582,0.00031366976,0.000108309854,0.000010417695,0.00002361019,0.00013715446,0.000032134805],"category_scores_gemma":[0.00038039818,0.0001111503,0.00005151017,0.000115024915,0.00022081628,0.00011581075,0.00009160654,0.00035603662,0.0000012654006],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017819355,0.00022121728,0.62086815,0.00033287308,0.000041794774,0.0000032489593,0.0002811675,2.1129742e-7,0.37470472,0.000009366042,0.000009362492,0.0017459445],"study_design_scores_gemma":[0.0010021422,0.000946404,0.8882989,0.00015097433,0.00003322312,0.0001331301,0.00019330162,0.000029016117,0.10886295,0.000027919208,0.00023815328,0.0000838492],"about_ca_topic_score_codex":0.0039365105,"about_ca_topic_score_gemma":0.0007297575,"teacher_disagreement_score":0.26743075,"about_ca_system_score_codex":0.00004576812,"about_ca_system_score_gemma":0.00001559033,"threshold_uncertainty_score":0.59508526},"labels":[],"label_agreement":null},{"id":"W2101374082","doi":"10.1128/iai.73.10.6429-6436.2005","title":"Role of an Alginate Lyase for Alginate Transport in Mucoid <i>Pseudomonas aeruginosa</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Petroleum Technology Research Centre","keywords":"Periplasmic space; Operon; Pseudomonas aeruginosa; Biology; Mutant; Bacterial outer membrane; Microbiology; Secretion; Cell biology; Escherichia coli; Biochemistry; Bacteria; Gene; Genetics","score_opus":0.010866528725621641,"score_gpt":0.3023320167896998,"score_spread":0.2914654880640781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101374082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971071,0.00042936287,0.00063658896,0.00021559867,0.000031636602,0.00045145417,0.000022666705,0.0000393751,0.0010662201],"genre_scores_gemma":[0.9980403,0.00017007993,0.0014559681,0.000071944036,0.00003705017,0.000046304925,0.000053433578,0.000012530636,0.000112342095],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992245,0.00005795019,0.00023372356,0.00014406301,0.00013349263,0.00020628641],"domain_scores_gemma":[0.9994388,0.00008028897,0.00005360855,0.0002003813,0.00011462019,0.000112277594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038640187,0.000104507104,0.00022882258,0.00018065072,0.00007139276,0.000007381747,0.00004330021,0.000059730046,0.000054918888],"category_scores_gemma":[0.00011618478,0.000097523596,0.000056980865,0.00018462531,0.00011643356,0.00027810902,0.000014092135,0.0002079107,0.000003279784],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013816045,0.0010870849,0.05396519,0.00033472027,0.000037444584,0.000004804454,0.00077505806,0.00012406963,0.7006811,0.00030141664,0.000043300744,0.2412642],"study_design_scores_gemma":[0.004581948,0.0013862286,0.68565136,0.00013439544,0.000035892044,0.00006999012,0.00026257377,0.0036572579,0.2715112,0.00063610123,0.031906366,0.00016667008],"about_ca_topic_score_codex":0.0015399635,"about_ca_topic_score_gemma":0.0006012022,"teacher_disagreement_score":0.63168615,"about_ca_system_score_codex":0.00005174547,"about_ca_system_score_gemma":0.000055150445,"threshold_uncertainty_score":0.3976897},"labels":[],"label_agreement":null},{"id":"W2101474652","doi":"10.1128/iai.01357-13","title":"Role of Ferric Reductases in Iron Acquisition and Virulence in the Fungal Pathogen Cryptococcus neoformans","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Cryptococcus neoformans; Virulence; Biology; Siderophore; Mutant; Transferrin; Microbiology; Virulence factor; Transferrin receptor; Ferritin; Ferric; Gene; Biochemistry; Chemistry","score_opus":0.010180031612693931,"score_gpt":0.2507138198972067,"score_spread":0.24053378828451277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101474652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650985,0.000623922,0.00000502394,0.00013747036,0.000035985147,0.00031885004,0.0000033745257,0.000010422972,0.0023550997],"genre_scores_gemma":[0.9988577,0.0009534974,0.000017957722,0.00008977457,0.000018896248,0.00003942663,0.0000059519925,0.0000028835364,0.000013908519],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995326,0.00009277772,0.0001539475,0.000071663366,0.000055627548,0.00009337836],"domain_scores_gemma":[0.99974626,0.000053616608,0.00003700677,0.00010228199,0.000041452517,0.000019378691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002143021,0.00006758027,0.000121177385,0.0000978612,0.00010720324,0.0000150638225,0.00001713293,0.00004340394,0.00005223227],"category_scores_gemma":[0.000040282885,0.0000468934,0.000019771456,0.00019770402,0.00008196924,0.00015709133,0.00002753405,0.00017388506,0.000004646208],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047500136,0.00031098502,0.8486975,0.00007739976,0.0000099843055,0.0000013654676,0.0026422443,0.000013741004,0.13722828,0.00023262203,0.00008478377,0.010653632],"study_design_scores_gemma":[0.00042311725,0.00030900692,0.9957505,0.000056408495,0.000011777818,0.000051592626,0.0015196753,0.00021876257,0.0010526972,0.00035738887,0.00020228713,0.00004682375],"about_ca_topic_score_codex":0.0057526757,"about_ca_topic_score_gemma":0.00027007906,"teacher_disagreement_score":0.147053,"about_ca_system_score_codex":0.000022117143,"about_ca_system_score_gemma":0.000009802172,"threshold_uncertainty_score":0.8696363},"labels":[],"label_agreement":null},{"id":"W2102044733","doi":"10.1128/iai.72.11.6511-6518.2004","title":"Expression of Heterologous Antigens in Commensal <i>Neisseria</i> spp.: Preservation of Conformational Epitopes with Vaccine Potential","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"Imperial College London","keywords":"Neisseria meningitidis; Bacterial outer membrane; Microbiology; Neisseria; Heterologous; Biology; Antigen; Epitope; Meningococcal vaccine; Virology; Membrane protein; Recombinant DNA; Bacteria; Escherichia coli; Immunology; Gene; Membrane; Biochemistry","score_opus":0.00990183483515694,"score_gpt":0.23067176084464527,"score_spread":0.22076992600948833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102044733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861664,0.000102745216,0.0006417062,0.00007691018,0.00025405685,0.00015375031,0.000014973965,0.000020028308,0.0001191658],"genre_scores_gemma":[0.99964076,0.0001328362,0.000051987856,0.00002066178,0.000011734891,0.00000752346,0.00011459445,0.000004660924,0.000015234384],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99939996,0.00010465984,0.00030175204,0.0000792886,0.000013067135,0.00010125014],"domain_scores_gemma":[0.9995461,0.000028928114,0.0001783362,0.00012114094,0.00011610803,0.000009349476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015248377,0.00009192134,0.0001990115,0.0001335846,0.000104637205,0.000006817437,0.000041418843,0.000121564655,0.00013106092],"category_scores_gemma":[0.000022542445,0.00007301694,0.000029120327,0.00012656026,0.00006126958,0.00029986442,0.00004090862,0.00015203764,0.0000037907914],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047599326,0.0002730228,0.087630875,0.000035870245,0.000029349292,1.17327524e-7,0.00023402579,0.00030339233,0.9103395,0.00020165999,0.00003092393,0.0004452754],"study_design_scores_gemma":[0.002441958,0.00048438815,0.5695769,0.000056617177,0.000011500791,0.00004964506,0.000052524367,0.0000049662167,0.42654896,0.0001278953,0.0005803988,0.000064210544],"about_ca_topic_score_codex":0.0032960097,"about_ca_topic_score_gemma":0.00035596217,"teacher_disagreement_score":0.48379052,"about_ca_system_score_codex":0.000012694745,"about_ca_system_score_gemma":0.000025428668,"threshold_uncertainty_score":0.49826026},"labels":[],"label_agreement":null},{"id":"W2102375898","doi":"10.1128/iai.01141-07","title":"Flagellin-Dependent and -Independent Inflammatory Responses following Infection by Enteropathogenic<i>Escherichia coli</i>and<i>Citrobacter rodentium</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; BC Children's Hospital","funders":"","keywords":"Citrobacter rodentium; Enteropathogenic Escherichia coli; Biology; Flagellin; TLR5; Microbiology; Proinflammatory cytokine; Type three secretion system; Citrobacter; Intimin; Shigella flexneri; Pathogen; TLR2; Innate immune system; Enterobacteriaceae; Escherichia coli; Immunology; Inflammation; Virulence; Immune system; Bacteria; Gene","score_opus":0.011572114319585004,"score_gpt":0.2466289249014932,"score_spread":0.23505681058190822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102375898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964598,0.0020666644,0.000601292,0.00004426538,0.00022115771,0.00026587158,0.000010793197,0.000040892315,0.00028927406],"genre_scores_gemma":[0.9838253,0.014851261,0.000055672273,0.00018486056,0.00007468058,0.000052430078,0.000025797688,0.00002318855,0.0009067837],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985473,0.0004132174,0.0002403859,0.00034791438,0.00018249461,0.00026866887],"domain_scores_gemma":[0.99941456,0.00004101139,0.00008787405,0.00023563618,0.00008697401,0.00013391946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005108125,0.00022515297,0.0001998945,0.00008007406,0.0006337284,0.000073405114,0.000058625035,0.00017027301,0.000007344033],"category_scores_gemma":[0.00019359474,0.00022457044,0.00008133979,0.00009398259,0.00018375745,0.000035306904,0.00033018723,0.00031537988,0.0000040608716],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014706232,0.00007131388,0.3088707,0.00002766695,0.0001011422,0.000006336861,0.00015011521,0.0000016460441,0.6899117,0.0000034069026,0.0002424745,0.00046643845],"study_design_scores_gemma":[0.0016337592,0.00055598246,0.86268526,0.000028464365,0.000056219702,0.00014312215,0.000067773595,0.000047649097,0.108495064,0.00002212998,0.025866887,0.000397691],"about_ca_topic_score_codex":0.000496548,"about_ca_topic_score_gemma":0.000267777,"teacher_disagreement_score":0.58141667,"about_ca_system_score_codex":0.00003316356,"about_ca_system_score_gemma":0.00005089425,"threshold_uncertainty_score":0.91577166},"labels":[],"label_agreement":null},{"id":"W2102598722","doi":"10.1128/iai.00818-13","title":"Capsular Sialic Acid of Streptococcus suis Serotype 2 Binds to Swine Influenza Virus and Enhances Bacterial Interactions with Virus-Infected Tracheal Epithelial Cells","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Microbiology; Virology; Virus; Sialic acid; Streptococcus suis; Coinfection; Pathogen; Serotype; Influenza A virus; Respiratory tract; Virulence; Respiratory system; Gene","score_opus":0.018360767270784905,"score_gpt":0.2898143995238368,"score_spread":0.2714536322530519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102598722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764884,0.00002900642,0.00016870473,0.000055616492,0.00031229487,0.0011251746,0.000058195255,0.00008375579,0.00051842903],"genre_scores_gemma":[0.9992293,0.00007138936,0.00011865927,0.000090169706,0.00012433818,0.00021013342,0.000038659855,0.00002092483,0.00009640744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99895465,0.000111465386,0.00034974213,0.0002468172,0.000119945136,0.00021735672],"domain_scores_gemma":[0.99904656,0.000064201085,0.00014156867,0.00027045517,0.0002556735,0.00022155119],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009542619,0.00024068286,0.000373959,0.0002575557,0.0002338686,0.00006719116,0.00003222436,0.000113517446,0.0011188288],"category_scores_gemma":[0.00006271059,0.00018702068,0.00006910041,0.00037616896,0.00013748431,0.00032670936,0.00004913012,0.0002755282,0.000060381884],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032323526,0.000578059,0.13217366,0.000042945227,0.00021088216,0.0000018976149,0.00031748193,0.0000043892705,0.8579768,0.000010026987,0.00004651792,0.00831414],"study_design_scores_gemma":[0.0016657443,0.0016052715,0.50493723,0.000052986965,0.000120579134,0.000032351953,0.00005126479,0.000024735175,0.48929113,0.000013715843,0.002079301,0.00012567989],"about_ca_topic_score_codex":0.020138834,"about_ca_topic_score_gemma":0.0016046127,"teacher_disagreement_score":0.3727636,"about_ca_system_score_codex":0.000065411055,"about_ca_system_score_gemma":0.000053184405,"threshold_uncertainty_score":0.9997943},"labels":[],"label_agreement":null},{"id":"W2102792995","doi":"10.1128/iai.71.1.393-400.2003","title":"CD36-Mediated Nonopsonic Phagocytosis of Erythrocytes Infected with Stage I and IIA Gametocytes of <i>Plasmodium falciparum</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"CD36; Gametocyte; Biology; Phagocytosis; Plasmodium falciparum; Scavenger receptor; Monoclonal antibody; Microbiology; Receptor; Antibody; Immunology; Virology; Malaria; Biochemistry","score_opus":0.019713697911800637,"score_gpt":0.2540094112355454,"score_spread":0.23429571332374474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102792995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963963,0.0008694253,0.00013767122,0.0001922115,0.000024481473,0.00039605814,0.000026306509,0.000045188142,0.001912333],"genre_scores_gemma":[0.9977214,0.0018058353,0.0000676574,0.000057863756,0.000015405483,0.000023333267,0.000016869528,0.0000123835725,0.00027929302],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990631,0.00011482186,0.0002663094,0.0001486014,0.00019747784,0.00020972268],"domain_scores_gemma":[0.99898666,0.00024039137,0.00014500578,0.00023776692,0.00024844168,0.00014174501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023135629,0.00014605274,0.00040270764,0.00021106846,0.0000927971,0.000017192344,0.0000379155,0.00009623074,0.00041979234],"category_scores_gemma":[0.00032707534,0.00011260769,0.000050566483,0.00035309562,0.00028375568,0.00014571653,0.00005066091,0.00029245304,0.0000055039723],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027791907,0.0016613137,0.6274812,0.0011536479,0.0008789772,0.0000126955865,0.0010545269,0.000013530401,0.3470025,0.0003330468,0.00027174907,0.017357597],"study_design_scores_gemma":[0.010320544,0.0045471373,0.86871773,0.00020686993,0.00022940579,0.00008128561,0.0002003611,0.0034457897,0.10985358,0.000020955025,0.0021545507,0.00022180159],"about_ca_topic_score_codex":0.0016121729,"about_ca_topic_score_gemma":0.00016980534,"teacher_disagreement_score":0.2412365,"about_ca_system_score_codex":0.000026487342,"about_ca_system_score_gemma":0.000052148607,"threshold_uncertainty_score":0.4596432},"labels":[],"label_agreement":null},{"id":"W2102898253","doi":"10.1128/iai.69.1.543-546.2001","title":"Carboxy-Terminal Proteolytic Processing of <i>Helicobacter pylori</i> Vacuolating Toxin","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Toxin; Biology; Helicobacter pylori; Microbiology; Amino acid; Proteolysis; Peptide sequence; Cleavage (geology); Signal peptidase; Biochemistry; Helicobacter; Gene; Signal peptide; Genetics; Enzyme","score_opus":0.021797531103807107,"score_gpt":0.27740654162784123,"score_spread":0.2556090105240341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102898253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965076,0.00014152513,0.00025962878,0.0003859949,0.00013029265,0.00029863705,0.0000015818737,0.00008412858,0.0021906218],"genre_scores_gemma":[0.99902534,0.00015708199,0.0001678914,0.00032219203,0.00009038315,0.000024511135,0.000006583236,0.000015628491,0.0001903706],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990477,0.00008758777,0.0003400624,0.00016650783,0.000119193,0.00023894054],"domain_scores_gemma":[0.9993387,0.000030293375,0.00015243675,0.0001838671,0.000215157,0.00007953382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024367706,0.00015917663,0.00030733674,0.00013794946,0.00018565182,0.000016455402,0.00003546608,0.000110845984,0.000034693076],"category_scores_gemma":[0.00015112008,0.00013929623,0.00005543202,0.00025664558,0.0001530959,0.0001735253,0.00007099969,0.0004344344,0.000006611699],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023271037,0.00017628215,0.93736464,0.00014819327,0.000104934785,0.000014995622,0.0009787794,0.0000013269893,0.03526752,0.0000028532354,0.000026183869,0.025681557],"study_design_scores_gemma":[0.0015173609,0.00071444665,0.9902608,0.00026356347,0.00014169824,0.0007385386,0.00013308562,0.00026162885,0.0044652647,0.00001711571,0.0013781923,0.000108295055],"about_ca_topic_score_codex":0.00048175786,"about_ca_topic_score_gemma":0.000060175524,"teacher_disagreement_score":0.05289615,"about_ca_system_score_codex":0.000051999457,"about_ca_system_score_gemma":0.000042424683,"threshold_uncertainty_score":0.5680335},"labels":[],"label_agreement":null},{"id":"W2103136310","doi":"10.1128/iai.69.4.2237-2244.2001","title":"Evidence that the <i>Campylobacter fetus sap</i> Locus Is an Ancient Genomic Constituent with Origins before Mammals and Reptiles Diverged","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; U.S. Public Health Service; National Institutes of Health","keywords":"Biology; Campylobacter fetus; Locus (genetics); Genetics; Phylogenetic tree; Pathogenicity island; Virulence; Gene; Phylogenetics; Microbiology; Campylobacter; Bacteria","score_opus":0.060908042378082006,"score_gpt":0.2532917005649163,"score_spread":0.19238365818683428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103136310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99771094,0.0006213956,0.000017302897,0.0009812289,0.00013508988,0.00021324286,0.000013475979,0.00005317006,0.00025416145],"genre_scores_gemma":[0.99573016,0.0024877295,0.000009243405,0.0015721451,0.00009673908,0.0000135006785,0.000013835279,9.45667e-7,0.00007571626],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893343,0.00028498383,0.00016236423,0.000272946,0.000097277174,0.0002489884],"domain_scores_gemma":[0.99938,0.00018347836,0.00013336315,0.00012752358,0.00006004814,0.00011558953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047431156,0.00016177921,0.00018409741,0.000012334252,0.000631916,0.00010240627,0.00011742966,0.000089318906,0.00025363092],"category_scores_gemma":[0.000049569404,0.000053184012,0.000042395823,0.00015583099,0.00033024742,0.00025912438,0.00009963943,0.00018867166,0.000012723692],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000810694,0.00004724327,0.93224686,0.0000035828627,0.00001752006,0.0000031081295,0.00031546716,0.0000017504464,0.025209883,0.00009590924,0.00010881039,0.041868813],"study_design_scores_gemma":[0.00013466328,0.00045679908,0.9646138,0.00003129039,0.0000244013,0.000212524,0.00028270157,0.000014990137,0.0005438586,0.00013040873,0.03342238,0.00013221697],"about_ca_topic_score_codex":0.0057811844,"about_ca_topic_score_gemma":0.0048394115,"teacher_disagreement_score":0.041736595,"about_ca_system_score_codex":0.00004013331,"about_ca_system_score_gemma":0.000010225798,"threshold_uncertainty_score":0.873946},"labels":[],"label_agreement":null},{"id":"W2103162136","doi":"10.1128/iai.69.12.7544-7549.2001","title":"Temporal Sequence and Kinetics of Proinflammatory and Anti-Inflammatory Cytokine Secretion Induced by Toxic Shock Syndrome Toxin 1 in Human Peripheral Blood Mononuclear Cells","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxin Mechanisms and Immunotoxins","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre; University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada; York University","keywords":"Proinflammatory cytokine; Peripheral blood mononuclear cell; Biology; Secretion; Cytokine; Immunology; Toxin; Shock (circulatory); Inflammation; Microbiology; Medicine; In vitro; Biochemistry; Internal medicine","score_opus":0.012725359778623909,"score_gpt":0.2295455229971952,"score_spread":0.21682016321857128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103162136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985485,0.0006778995,0.00004103618,0.000025765332,0.00014800334,0.00035141082,0.000020239786,0.000055716384,0.000131446],"genre_scores_gemma":[0.99879736,0.0008602895,0.000035147987,0.00003224038,0.000008609425,0.000013938889,0.00004454741,0.000021746764,0.0001861501],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987106,0.00028025283,0.0004358568,0.00026521538,0.000043856675,0.0002642441],"domain_scores_gemma":[0.9994691,0.00003065268,0.00018489882,0.00022922864,0.000046217458,0.00003992252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031606547,0.00023214187,0.00035485358,0.00017591892,0.00019293666,0.000032577194,0.00007933323,0.0003395436,0.00014122183],"category_scores_gemma":[0.000023534436,0.00023786999,0.00003835212,0.00014426238,0.0002624376,0.00025222267,0.00012082076,0.00048509813,0.0000038848216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053649666,0.00020030745,0.025780287,0.000058617392,0.000045233952,0.0000082553015,0.00042867343,0.000002226434,0.97243,0.000116043746,0.000014059465,0.0008626345],"study_design_scores_gemma":[0.0024863237,0.0011614048,0.2782632,0.000113746704,0.000040165698,0.00049764616,0.00028820697,0.000027058377,0.7155079,0.00013633117,0.0011401215,0.00033784818],"about_ca_topic_score_codex":0.0009996336,"about_ca_topic_score_gemma":0.00014656148,"teacher_disagreement_score":0.2569221,"about_ca_system_score_codex":0.000037660524,"about_ca_system_score_gemma":0.000020709022,"threshold_uncertainty_score":0.97000563},"labels":[],"label_agreement":null},{"id":"W2103485568","doi":"10.1128/iai.70.8.4148-4157.2002","title":"<i>Mycobacterium bovis</i>BCG-Infected Mice Are More Susceptible to Staphylococcal Enterotoxin B-Mediated Toxic Shock than Uninfected Mice despite Reduced In Vitro Splenocyte Responses to Superantigens","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Superantigen; Splenocyte; Enterotoxin; Biology; Immunology; Microbiology; Mycobacterium bovis; Interferon gamma; T cell; Antigen; In vitro; T lymphocyte; Cytokine; Immune system; Medicine; Mycobacterium tuberculosis; Tuberculosis","score_opus":0.017730685630979074,"score_gpt":0.2570994935957077,"score_spread":0.23936880796472865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103485568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957367,0.0004996678,0.00010610582,0.0009791286,0.0007286913,0.001271127,0.00024161657,0.0003057824,0.00013116839],"genre_scores_gemma":[0.9960847,0.00046285102,0.000050763127,0.00059906504,0.000037991187,0.00016424709,0.00028970416,0.00005348114,0.002257231],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99645674,0.001428498,0.0006595574,0.00055851176,0.00008134894,0.0008153605],"domain_scores_gemma":[0.99833465,0.00048128015,0.00016969841,0.00056194887,0.00030153545,0.00015088345],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00050089136,0.00048441393,0.00059784757,0.0011579548,0.00062428735,0.00011461002,0.0002506412,0.0004292908,0.000790872],"category_scores_gemma":[0.00088722055,0.00045933147,0.00016754998,0.0012885942,0.00011925683,0.0003102452,0.00026743027,0.0008290089,0.00064449426],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002473345,0.00058256515,0.037547737,0.000034190733,0.000114397895,0.000009928699,0.0023756812,0.000011054643,0.95466065,0.0000042743363,0.0010004853,0.0011856734],"study_design_scores_gemma":[0.002380206,0.00077547395,0.55568945,0.00010430624,0.00003614715,0.000104467916,0.00038811803,0.00003562205,0.41706347,0.0000021165401,0.022957943,0.0004626417],"about_ca_topic_score_codex":0.0034023884,"about_ca_topic_score_gemma":0.0013030057,"teacher_disagreement_score":0.5375972,"about_ca_system_score_codex":0.00023102741,"about_ca_system_score_gemma":0.00006690291,"threshold_uncertainty_score":0.99978584},"labels":[],"label_agreement":null},{"id":"W2103499212","doi":"10.1128/iai.72.12.7063-7072.2004","title":"Polymorphisms in the <i>Chlamydia trachomatis</i> Cytotoxin Locus Associated with Ocular and Genital Isolates","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Chlamydia trachomatis; Serotype; Genetics; Locus (genetics); Tropism; Chlamydiaceae; Microbiology; Gene; Virology; Virus","score_opus":0.012315812518708778,"score_gpt":0.24076822111723414,"score_spread":0.22845240859852536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103499212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969472,0.0011144251,0.00015857995,0.00021380433,0.00009127479,0.00035512063,0.000007727414,0.00005581002,0.0010560015],"genre_scores_gemma":[0.9995293,0.00017550612,0.000008321486,0.00007248854,0.000011589537,0.000042897893,0.000027682436,0.000010863273,0.000121371915],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988341,0.00050380814,0.00017205524,0.00020711268,0.000040148698,0.00024281924],"domain_scores_gemma":[0.99941754,0.0001902862,0.00006225173,0.00024178566,0.00007090218,0.000017256192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067550625,0.00014577074,0.00016675287,0.00016892671,0.00045556892,0.000060869,0.00007628902,0.00016858819,0.00007284245],"category_scores_gemma":[0.0002561808,0.00010045571,0.00003197744,0.00037089744,0.0004208854,0.0002551514,0.000040650462,0.00073716947,0.00003812151],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020961085,0.0013798932,0.5314508,0.000016970835,0.00033954775,0.000017823873,0.0039417474,0.00007782094,0.45260894,0.0010237435,0.00008475064,0.0088483365],"study_design_scores_gemma":[0.0018203432,0.00032722446,0.9685302,0.000029465587,0.00002453911,0.00059909787,0.00023733634,0.0000022529052,0.02729312,0.00054226746,0.00044718472,0.00014697602],"about_ca_topic_score_codex":0.0047141253,"about_ca_topic_score_gemma":0.0013333496,"teacher_disagreement_score":0.43707937,"about_ca_system_score_codex":0.00006893465,"about_ca_system_score_gemma":0.000045903398,"threshold_uncertainty_score":0.7126379},"labels":[],"label_agreement":null},{"id":"W2103533915","doi":"10.1128/iai.00285-15","title":"Correction for Lam et al., Antibodies to PhnD Inhibit Staphylococcal Biofilms","year":2015,"lang":"en","type":"erratum","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Biology; Microbiology; Antibody; Staphylococcal infections; Virology; Staphylococcus aureus; Bacteria; Immunology; Genetics","score_opus":0.041362049024877785,"score_gpt":0.36060974938613016,"score_spread":0.3192477003612524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103533915","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.744767,0.0030078683,0.00094201113,0.014317775,0.074053094,0.005953643,0.00089092297,0.0007199683,0.15534769],"genre_scores_gemma":[0.263584,0.053616796,0.0009770206,0.041963793,0.0073305853,0.0022516837,0.018512849,0.000508168,0.6112551],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986523,0.00016407177,0.00027434758,0.0003221192,0.00024440148,0.000342762],"domain_scores_gemma":[0.99844855,0.00017767359,0.00010542131,0.0003340227,0.0005539917,0.00038034824],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007666132,0.00028257386,0.00049527903,0.0004406379,0.00022711685,0.00012519935,0.0000536701,0.0003725455,0.00015012089],"category_scores_gemma":[0.0017556446,0.00025015644,0.00014911823,0.00027489956,0.000084675325,0.00014808413,0.00012315104,0.0011783682,0.000062607505],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042811185,0.00023366245,0.0076478445,0.00024976162,0.00009031648,0.0000026582684,0.00016022362,5.82115e-7,0.0025458785,0.000008238636,0.9817878,0.006844937],"study_design_scores_gemma":[0.001005057,0.0018930482,0.06400535,0.0004330064,0.00007297758,0.000038398004,0.0000756463,0.000120095734,0.0017304426,0.00003153656,0.93035454,0.00023992374],"about_ca_topic_score_codex":0.0035063687,"about_ca_topic_score_gemma":0.00067741866,"teacher_disagreement_score":0.48118305,"about_ca_system_score_codex":0.00014816271,"about_ca_system_score_gemma":0.00033184674,"threshold_uncertainty_score":0.99999505},"labels":[],"label_agreement":null},{"id":"W2103627413","doi":"10.1128/iai.01596-07","title":"The Inositol Phosphatase SHIP Controls <i>Salmonella enterica</i> Serovar Typhimurium Infection In Vivo","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Liver physiology and pathology","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Terry Fox Research Institute; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health; Genome Canada; Howard Hughes Medical Institute","keywords":"Biology; Salmonella enterica; In vivo; Microbiology; Macrophage; Immunology; Immune system; Salmonella; In vitro; Bacteria","score_opus":0.020110930266867718,"score_gpt":0.26274383777412363,"score_spread":0.2426329075072559,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103627413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967624,0.0004272362,0.000038149738,0.00023633207,0.00042415835,0.00024398127,0.0000046103287,0.000053067273,0.0018100882],"genre_scores_gemma":[0.996211,0.002692358,0.000009022614,0.00071493577,0.0000882761,0.000027895516,0.00001548744,0.000007228992,0.00023380121],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917823,0.00027468792,0.0001872161,0.0001319724,0.0000562555,0.00017162494],"domain_scores_gemma":[0.9994486,0.0001629627,0.00006635409,0.00021137537,0.000055571076,0.000055141332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000247174,0.00011124702,0.00019453814,0.00006478038,0.00041283917,0.000009059018,0.000032039272,0.0001285108,0.00005093464],"category_scores_gemma":[0.00008913795,0.00008157918,0.000051750845,0.00016684736,0.00023699552,0.00010096392,0.000040712162,0.00041237636,0.00003405756],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007279406,0.00030121268,0.97095317,0.00002575366,0.0000449105,0.000035718313,0.0003963422,0.00000450127,0.024972858,0.00025517994,0.0013225192,0.00095989596],"study_design_scores_gemma":[0.0017467593,0.0004484024,0.9653438,0.000020072122,0.000027428065,0.00050651014,0.000015133699,0.000061443505,0.015252111,0.00016553098,0.016326277,0.00008656155],"about_ca_topic_score_codex":0.001971859,"about_ca_topic_score_gemma":0.00014680177,"teacher_disagreement_score":0.015003758,"about_ca_system_score_codex":0.00003362933,"about_ca_system_score_gemma":0.000033294567,"threshold_uncertainty_score":0.33267024},"labels":[],"label_agreement":null},{"id":"W2104053696","doi":"10.1128/iai.05033-11","title":"Attaching and Effacing Bacterial Effector NleC Suppresses Epithelial Inflammatory Responses by Inhibiting NF-κB and p38 Mitogen-Activated Protein Kinase Activation","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; CH.I.L.D. Foundation; University of British Columbia; Howard Hughes Medical Institute; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; Child and Family Research Institute","keywords":"Citrobacter rodentium; Effector; Biology; Enteropathogenic Escherichia coli; Microbiology; Type three secretion system; Chemokine; Secretion; Cell biology; Inflammation; Pathogen; Immunology; Escherichia coli; Virulence","score_opus":0.01744541255405934,"score_gpt":0.2603805464280143,"score_spread":0.24293513387395493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104053696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990436,0.00021748239,0.00012243554,0.00001855861,0.00007799825,0.00035846335,0.00001996342,0.000030767987,0.00011076469],"genre_scores_gemma":[0.9994093,0.00022522567,0.000083678686,0.00001890254,0.00008701333,0.00005831071,0.000037828988,0.000016904134,0.000062816536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988696,0.00046925686,0.00016083923,0.00023144369,0.00007836296,0.00019048488],"domain_scores_gemma":[0.99955887,0.00007460062,0.000091772206,0.00012051485,0.0000814251,0.00007280603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039670247,0.00016557946,0.00013977496,0.000063658925,0.00044378178,0.00007039096,0.00003658747,0.00012766592,0.000010506075],"category_scores_gemma":[0.00095091667,0.00015738474,0.000024340685,0.00006529897,0.00016461895,0.000041188287,0.00022134121,0.0002158225,6.82503e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007736759,0.000037743717,0.018272046,0.000097776996,0.00005397491,7.047131e-7,0.00046428415,1.4828011e-7,0.97714615,0.0000036903195,0.000029495874,0.0031203174],"study_design_scores_gemma":[0.0007703203,0.0003469759,0.075207405,0.00006607933,0.000009290895,0.000007246506,0.00008655735,0.000009338961,0.92184156,0.000009561981,0.0014847398,0.00016091886],"about_ca_topic_score_codex":0.0009306763,"about_ca_topic_score_gemma":0.00006511859,"teacher_disagreement_score":0.056935355,"about_ca_system_score_codex":0.000019104813,"about_ca_system_score_gemma":0.000038390408,"threshold_uncertainty_score":0.64179635},"labels":[],"label_agreement":null},{"id":"W2104071542","doi":"10.1128/iai.00936-15","title":"LL-37 Immunomodulatory Activity during Mycobacterium tuberculosis Infection in Macrophages","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pharmacological Effects of Natural Compounds","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Mycobacterium tuberculosis; Tuberculosis; Microbiology; Mycobacterium; Virology; Immunology; Bacteria; Pathology; Medicine","score_opus":0.0862844610880304,"score_gpt":0.40355000529573765,"score_spread":0.31726554420770725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104071542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939729,0.0006856141,0.000010624309,0.00022693022,0.0021382382,0.00039624426,0.000009028548,0.00025153466,0.002308911],"genre_scores_gemma":[0.9979185,0.0012834386,0.000012005639,0.00034532504,0.00017182234,0.000060252452,0.000012209103,0.000020100511,0.00017633796],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99729973,0.0015180605,0.00029397695,0.00031264554,0.00014411031,0.00043145934],"domain_scores_gemma":[0.99898857,0.00026741182,0.00013695542,0.00020079991,0.00012762216,0.00027861464],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001158522,0.0002943554,0.00033411683,0.0002297204,0.00038614846,0.000058648864,0.000109420704,0.00045820992,0.00027284218],"category_scores_gemma":[0.00026357253,0.00028472737,0.00009949163,0.0004480697,0.00021452252,0.00066609436,0.00024010084,0.001964874,0.00008452568],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012430187,0.0008028584,0.35000825,0.00012952708,0.00014354652,0.000033295288,0.0002963623,0.0004774526,0.6329426,0.00003211879,0.00038411698,0.013506845],"study_design_scores_gemma":[0.0027635663,0.00029930173,0.8682722,0.00001786807,0.000057422374,0.00008615634,0.000013099195,0.00096136524,0.12162465,0.00018357366,0.005416991,0.0003038193],"about_ca_topic_score_codex":0.0018429739,"about_ca_topic_score_gemma":0.00022474646,"teacher_disagreement_score":0.51826394,"about_ca_system_score_codex":0.00043083486,"about_ca_system_score_gemma":0.000054943026,"threshold_uncertainty_score":0.9999605},"labels":[],"label_agreement":null},{"id":"W2104152050","doi":"10.1128/iai.70.12.6860-6870.2002","title":"A Modified Hepatitis B Virus Core Particle Containing Multiple Epitopes of the<i>Plasmodium falciparum</i>Circumsporozoite Protein Provides a Highly Immunogenic Malaria Vaccine in Preclinical Analyses in Rodent and Primate Hosts","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; York University","keywords":"Circumsporozoite protein; Virology; Epitope; Immunogenicity; Biology; Plasmodium falciparum; Malaria vaccine; Malaria; Plasmodium vivax; Antibody; Immunology","score_opus":0.08792298331597165,"score_gpt":0.33994224330701733,"score_spread":0.2520192599910457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104152050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965894,0.0017551348,0.000012863729,0.00031401904,0.00007233181,0.0011367842,0.000015700321,0.000039109327,0.00006462125],"genre_scores_gemma":[0.997495,0.0021106708,0.0000730857,0.00008891708,0.000015131572,0.00015642848,0.000004766229,0.000016089229,0.00003989165],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983108,0.00030597785,0.0006897098,0.000253318,0.00016985954,0.00027032915],"domain_scores_gemma":[0.9990783,0.00021435253,0.000219774,0.00031385012,0.000106194464,0.00006756409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000499225,0.00019287657,0.0005514596,0.00013809238,0.00015266563,0.000026560594,0.00006512797,0.000114060276,0.000024584198],"category_scores_gemma":[0.0011261291,0.00015296967,0.000078928,0.00038223746,0.00014338939,0.00019532828,0.00016916233,0.00038821303,0.0000030369517],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037965656,0.0004288602,0.8973737,0.000118311014,0.00007681308,0.000008391179,0.0016058405,0.000032563028,0.09749856,0.00005439552,0.0000047025924,0.0024182294],"study_design_scores_gemma":[0.0035395385,0.000505329,0.9533784,0.00041174574,0.00006500422,0.00002198619,0.000057951485,0.008427034,0.03334261,0.000066217915,0.00004406597,0.00014014506],"about_ca_topic_score_codex":0.09376312,"about_ca_topic_score_gemma":0.07127181,"teacher_disagreement_score":0.06415595,"about_ca_system_score_codex":0.000102283826,"about_ca_system_score_gemma":0.000034751018,"threshold_uncertainty_score":0.9456751},"labels":[],"label_agreement":null},{"id":"W2104181153","doi":"10.1128/iai.02841-14","title":"Vibrio cholerae Represses Polysaccharide Synthesis To Promote Motility in Mucosa","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Vibrio cholerae; Mucin; Biology; Microbiology; Mucus; Motility; Cholera toxin; Intestinal mucosa; El Tor; Vibrio; Pathogen; Bacteria; Cell biology; Biochemistry","score_opus":0.032981942901757655,"score_gpt":0.3062997743122831,"score_spread":0.27331783141052546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104181153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983717,0.00015954662,0.00012007658,0.0002541362,0.000089112094,0.00019415769,0.000009321563,0.000018225555,0.0007837207],"genre_scores_gemma":[0.9993725,0.0002179975,0.00010285242,0.000084777515,0.00005313195,0.000050519375,0.0000059904687,0.000007967899,0.00010428258],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922025,0.00016170552,0.00013823537,0.00021672486,0.000084806714,0.00017825063],"domain_scores_gemma":[0.9994302,0.00001746902,0.000029251129,0.00030349314,0.00010355165,0.00011607546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047774534,0.00010161301,0.00012767625,0.000070415364,0.000081178514,0.000042030566,0.00007275389,0.000071377384,0.000013448218],"category_scores_gemma":[0.002024137,0.00009618098,0.000029074316,0.00012933074,0.00005588703,0.00001124973,0.00027449775,0.00011389036,0.000010949755],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001566357,0.00014200625,0.11346934,0.000023397391,0.00003764098,0.0000016747763,0.0003051371,0.000015088943,0.8734979,0.0000034032428,0.0005618005,0.011785997],"study_design_scores_gemma":[0.0002441165,0.00018656727,0.6032285,0.000023817547,0.0000045306124,0.000008492251,0.00006193176,0.000015691518,0.38383487,0.00003026682,0.012255333,0.00010584702],"about_ca_topic_score_codex":0.0027345193,"about_ca_topic_score_gemma":0.0007783931,"teacher_disagreement_score":0.4897592,"about_ca_system_score_codex":0.000031976237,"about_ca_system_score_gemma":0.000050392155,"threshold_uncertainty_score":0.41337934},"labels":[],"label_agreement":null},{"id":"W2104279699","doi":"10.1128/iai.05734-11","title":"Streptococcus suis Capsular Polysaccharide Inhibits Phagocytosis through Destabilization of Lipid Microdomains and Prevents Lactosylceramide-Dependent Recognition","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Université de Montréal","funders":"Université de Montréal","keywords":"Streptococcus suis; Phagocytosis; Lactosylceramide; Microbiology; Phagosome; Biology; Exocytosis; Lipid raft; Francisella tularensis; Macrophage; Immune system; Virulence factor; Cell biology; Virulence; Immunology; Biochemistry; Secretion; Signal transduction; Glycolipid","score_opus":0.06484114488302077,"score_gpt":0.28507652200195,"score_spread":0.2202353771189292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104279699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967359,0.00012993482,0.00052961824,0.000011158823,0.00013677725,0.0007443129,0.000029147042,0.00007341037,0.0016097681],"genre_scores_gemma":[0.99866986,0.0007978356,0.00027032217,0.000047978676,0.000032709475,0.00006666668,0.00004291225,0.000018512183,0.000053176704],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990461,0.0001241775,0.0003354676,0.00022783906,0.00010851797,0.00015790452],"domain_scores_gemma":[0.99932176,0.00004218485,0.00016821006,0.00021361542,0.00016269552,0.00009153319],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015705226,0.00017581081,0.00025961135,0.0001413585,0.00018643559,0.000018475339,0.00002114586,0.00013248455,0.00036796485],"category_scores_gemma":[0.00010413821,0.000160551,0.000073812495,0.00021994853,0.0001169112,0.00030610512,0.000050945288,0.00017469404,0.000009328565],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014744798,0.0010032279,0.88198155,0.00012034224,0.00015070768,0.0000022918935,0.0010611328,4.2725222e-7,0.10162776,0.000040175528,0.000010481709,0.01385446],"study_design_scores_gemma":[0.001911215,0.00066877576,0.5469129,0.00013925094,0.00020654687,0.00007174781,0.00015397149,0.000012200792,0.44923145,0.00046858998,0.00009630336,0.000127029],"about_ca_topic_score_codex":0.0044374894,"about_ca_topic_score_gemma":0.00020315684,"teacher_disagreement_score":0.34760368,"about_ca_system_score_codex":0.000076022916,"about_ca_system_score_gemma":0.000037041107,"threshold_uncertainty_score":0.6708186},"labels":[],"label_agreement":null},{"id":"W2104327327","doi":"10.1128/iai.00406-12","title":"Mycobacterium avium subsp. paratuberculosis Inhibits Gamma Interferon-Induced Signaling in Bovine Monocytes: Insights into the Cellular Mechanisms of Johne's Disease","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Beef Cattle Research Council; Ministry of Agriculture - Saskatchewan","keywords":"Paratuberculosis; Biology; Kinome; Microbiology; Immune system; Mycobacterium; Interferon gamma; Interferon; Signal transduction; Virology; Immunology; Cell biology; Bacteria; Genetics","score_opus":0.025020481197178413,"score_gpt":0.2776423226230811,"score_spread":0.25262184142590266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104327327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997624,0.00075774576,0.00017461652,0.0002639259,0.00038117685,0.00048731646,0.000004127975,0.00003667642,0.00027043463],"genre_scores_gemma":[0.9990234,0.0004861151,0.000034014964,0.00018950723,0.00011184861,0.000063888954,0.00002952857,0.00002152771,0.000040183495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984145,0.00039228366,0.00038901222,0.00019197841,0.00025790534,0.0003542849],"domain_scores_gemma":[0.9987942,0.00013218689,0.00011940621,0.00043603018,0.00014858901,0.0003695963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004617706,0.00021323175,0.00032686235,0.00025545343,0.00016645437,0.00003768063,0.000093240706,0.00013224984,0.0001560372],"category_scores_gemma":[0.0003843419,0.00015499072,0.0001339347,0.00047583223,0.00008435987,0.00037765887,0.00020368828,0.0004922207,0.000017628898],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004995535,0.00059952197,0.31106007,0.0002599992,0.0000465322,0.000003285354,0.0015512722,0.0000011907464,0.6848443,0.00019293925,0.000034452536,0.000906849],"study_design_scores_gemma":[0.0007945204,0.00035661052,0.47084242,0.00027390022,0.000064430795,0.000003889709,0.0001516614,0.000064682994,0.5267638,0.0002528357,0.00030543294,0.00012584114],"about_ca_topic_score_codex":0.0026532374,"about_ca_topic_score_gemma":0.00018904606,"teacher_disagreement_score":0.15978234,"about_ca_system_score_codex":0.00013695615,"about_ca_system_score_gemma":0.0000962707,"threshold_uncertainty_score":0.6320338},"labels":[],"label_agreement":null},{"id":"W2104328367","doi":"10.1128/iai.71.6.3443-3453.2003","title":"Host Susceptibility to the Attaching and Effacing Bacterial Pathogen<i>Citrobacter rodentium</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Citrobacter rodentium; Biology; Microbiology; Citrobacter; Mesenteric lymph nodes; Pathogen; Immune system; Immunology; Intestinal mucosa; Enterobacteriaceae; Escherichia coli; Gene; Genetics","score_opus":0.01187046077054884,"score_gpt":0.27147935225507,"score_spread":0.25960889148452115,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104328367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978746,0.00018973752,0.0005591581,0.00010625944,0.00018743383,0.00019529698,0.000008065193,0.000010100855,0.00086934556],"genre_scores_gemma":[0.99914896,0.00032611884,0.000096423726,0.00018215053,0.00008325908,0.000018161438,0.000010219285,0.0000074852574,0.0001272289],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999122,0.00035546834,0.000106065934,0.00018535169,0.00006409917,0.00016698249],"domain_scores_gemma":[0.99958646,0.00002607106,0.000027491644,0.00023305943,0.000064046544,0.00006284798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064053846,0.00010115733,0.00008752686,0.000020834212,0.00042944978,0.00008200247,0.00004774426,0.000057618927,0.000016905946],"category_scores_gemma":[0.00050910725,0.00007580474,0.000033366145,0.00007240347,0.00007739415,0.000007901371,0.00018030038,0.00015639012,0.0000036880176],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000036913185,0.000029535391,0.10545448,0.000013514001,0.000027130909,2.1346277e-7,0.0001661011,0.0000027531942,0.89303625,0.000022561539,0.00014406235,0.0010665011],"study_design_scores_gemma":[0.00048153158,0.00029827395,0.8363598,0.000011157522,0.000015289701,0.000021375401,0.00014081274,0.000010396084,0.054216746,0.000021898912,0.10823981,0.00018291222],"about_ca_topic_score_codex":0.0003031263,"about_ca_topic_score_gemma":0.00092287175,"teacher_disagreement_score":0.8388195,"about_ca_system_score_codex":0.000014478366,"about_ca_system_score_gemma":0.000023230847,"threshold_uncertainty_score":0.3303024},"labels":[],"label_agreement":null},{"id":"W2104560884","doi":"10.1128/iai.68.7.4155-4168.2000","title":"Comparative Genomics of<i>Helicobacter pylori</i>: Analysis of the Outer Membrane Protein Families","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":328,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Genome; Gene duplication; Gene; Genetics; Comparative genomics; Bacterial outer membrane; Subfamily; Helicobacter pylori; Gene family; Function (biology); Membrane protein; Genomics; Escherichia coli","score_opus":0.021246553652753995,"score_gpt":0.26521112109140993,"score_spread":0.24396456743865594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104560884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718523,0.000059183327,0.000020435884,0.00028738417,0.000066529195,0.00029116005,0.000021293914,0.000019361943,0.0020494405],"genre_scores_gemma":[0.99906766,0.0002876055,0.000039645744,0.00021257685,0.000016355523,0.000013616844,0.000012929832,0.000005579524,0.0003440074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991643,0.00017077883,0.00032698744,0.00011652548,0.00009814881,0.00012329053],"domain_scores_gemma":[0.9993399,0.000036681173,0.00012721102,0.00030072272,0.00016131956,0.00003417567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015978157,0.00012319189,0.00049203116,0.00016824303,0.000106736385,0.0000053189083,0.000053108688,0.00007743514,0.00016300376],"category_scores_gemma":[0.000028380065,0.00008375971,0.00015689898,0.0005349118,0.0003334517,0.00006539877,0.00005020358,0.00026620264,0.0000056183726],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006060178,0.00040894622,0.85778785,0.00007672305,0.006477236,9.4992475e-7,0.006312385,0.0001326717,0.124429025,0.000018812021,0.000057931193,0.003691474],"study_design_scores_gemma":[0.00072339136,0.00023400312,0.9608256,0.000033809705,0.0011028214,0.00000813536,0.00017292592,0.00013345109,0.03382637,0.0000045952893,0.0028805966,0.00005425528],"about_ca_topic_score_codex":0.00095395144,"about_ca_topic_score_gemma":0.00032308145,"teacher_disagreement_score":0.10303781,"about_ca_system_score_codex":0.00002973554,"about_ca_system_score_gemma":0.00002133167,"threshold_uncertainty_score":0.34156218},"labels":[],"label_agreement":null},{"id":"W2104579038","doi":"10.1128/iai.01524-13","title":"Deregulated Balance of Omega-6 and Omega-3 Polyunsaturated Fatty Acids following Infection by the Zoonotic Pathogen Streptococcus suis","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fatty Acid Research and Health","field":"Nursing","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Omega; Biology; Pathogen; Microbiology; Streptococcus suis; Polyunsaturated fatty acid; Fatty acid; Biochemistry; Virulence","score_opus":0.01408096110780528,"score_gpt":0.27851592897202326,"score_spread":0.264434967864218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104579038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970333,0.00037952134,0.00087167916,0.00046111827,0.00042747366,0.00040413183,0.000012853172,0.00009697654,0.00031292991],"genre_scores_gemma":[0.9994838,0.00019458041,0.000034607423,0.0001451946,0.000040282986,0.000015933476,0.000039930477,0.00001705774,0.000028613907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99831367,0.00066697603,0.00029351207,0.00020588185,0.00018919916,0.00033077525],"domain_scores_gemma":[0.99908924,0.00023242374,0.00014012784,0.00029822005,0.00011217396,0.00012781336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008396322,0.00017272633,0.00025120456,0.00013027895,0.0007317253,0.000098982026,0.0000714629,0.00015407873,0.000019068246],"category_scores_gemma":[0.00037650226,0.00013220208,0.00007395913,0.0004308706,0.0001914187,0.0002765678,0.00006112337,0.00050083955,0.0000057289412],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023023845,0.00013428002,0.6612091,0.0001486171,0.00006307022,4.4389716e-7,0.000541115,0.00001489173,0.28961918,0.000054395117,0.0002990683,0.04768558],"study_design_scores_gemma":[0.0013578002,0.0005150772,0.9408748,0.00008883487,0.000036553916,0.000014238863,0.00007122353,0.0024476314,0.051489133,0.00021810661,0.0027265581,0.00016004163],"about_ca_topic_score_codex":0.005858406,"about_ca_topic_score_gemma":0.00050106074,"teacher_disagreement_score":0.27966568,"about_ca_system_score_codex":0.000070587244,"about_ca_system_score_gemma":0.000027219116,"threshold_uncertainty_score":0.88561964},"labels":[],"label_agreement":null},{"id":"W2104637063","doi":"10.1128/iai.68.1.310-319.2000","title":"Molecular Cloning and Mutagenesis of a DNA Locus Involved in Lipooligosaccharide Biosynthesis in<i>Haemophilus somnus</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"U.S. Department of Agriculture","keywords":"Biology; Haemophilus; Locus (genetics); Genetics; Cloning (programming); Microbiology; Molecular cloning; Gene; Bacteria; Peptide sequence","score_opus":0.009362164868226944,"score_gpt":0.23322746495016125,"score_spread":0.2238653000819343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104637063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99714595,0.00132658,0.000037373866,0.00005231693,0.00011980301,0.00013653042,0.000011327377,0.000025487603,0.0011446569],"genre_scores_gemma":[0.9980979,0.0017201634,0.000017942322,0.0000835895,0.0000070068622,0.000015368558,0.000012347129,0.000008176875,0.00003751748],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909765,0.0002368924,0.00028661924,0.00016101969,0.000019828289,0.00019796586],"domain_scores_gemma":[0.9994827,0.0002454783,0.00005888183,0.00016252263,0.00003054695,0.00001985379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027311553,0.00013151694,0.0002514589,0.00026592647,0.000115885596,0.000012194124,0.000042824468,0.00019627792,0.00020808855],"category_scores_gemma":[0.00018535586,0.00013505257,0.000039237966,0.00027265833,0.00018823396,0.00009926925,0.000036210306,0.0002383934,0.000021499498],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014538056,0.000414185,0.3484394,0.000058924303,0.000080966565,0.000016564883,0.000801567,0.00019684227,0.60906875,0.00044683772,0.000028551105,0.040302012],"study_design_scores_gemma":[0.001711621,0.00018475832,0.55556613,0.00013913664,0.00004674802,0.00010823082,0.00016884007,0.00006234268,0.43965963,0.0004869043,0.0016167666,0.0002488699],"about_ca_topic_score_codex":0.008647636,"about_ca_topic_score_gemma":0.00086339517,"teacher_disagreement_score":0.20712675,"about_ca_system_score_codex":0.000030491894,"about_ca_system_score_gemma":0.000029650804,"threshold_uncertainty_score":0.9979539},"labels":[],"label_agreement":null},{"id":"W2105265651","doi":"10.1128/iai.00933-12","title":"Intrarectal Instillation of Clostridium difficile Toxin A Triggers Colonic Inflammation and Tissue Damage: Development of a Novel and Efficient Mouse Model of Clostridium difficile Toxin Exposure","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Clostridium difficile toxin A; Clostridium difficile; Clostridium difficile toxin B; Microbiology; Inflammation; Toxin; Biology; Colitis; Inflammatory bowel disease; Intestinal mucosa; Immunology; Medicine; Pathology; Disease","score_opus":0.03327567667416753,"score_gpt":0.29027209925199604,"score_spread":0.2569964225778285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105265651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99718726,0.0005459182,0.00083459774,0.00007434578,0.00009394197,0.0008515656,0.00008715026,0.000038465783,0.00028674872],"genre_scores_gemma":[0.99863106,0.00045948682,0.00062985445,0.0000062927124,0.000059248858,0.000028163928,0.00007937869,0.000026379832,0.00008013052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979247,0.000119716504,0.00088766206,0.00025952194,0.00045018553,0.0003582222],"domain_scores_gemma":[0.9985162,0.00018597118,0.00039705544,0.0003065655,0.00036884611,0.00022538585],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00074295624,0.00028390274,0.0006086425,0.00044280844,0.00018819945,0.000020899875,0.00006664653,0.00025972587,0.00003594795],"category_scores_gemma":[0.0003968557,0.00026786822,0.00007206049,0.00044834218,0.00031375393,0.00017181448,0.00018622012,0.00039925493,0.0000011987903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070930755,0.0009832459,0.004371619,0.0006834274,0.00009426215,3.6960856e-7,0.0032148804,0.00058223004,0.9772525,0.000104383624,0.00001757335,0.01198621],"study_design_scores_gemma":[0.0034025663,0.00076612365,0.018802684,0.00017724211,0.0001093077,0.000024774938,0.00051358854,0.012694557,0.9631528,0.000003207693,0.00013684704,0.00021626364],"about_ca_topic_score_codex":0.0003643173,"about_ca_topic_score_gemma":0.000058170106,"teacher_disagreement_score":0.014431064,"about_ca_system_score_codex":0.00015666212,"about_ca_system_score_gemma":0.00030516807,"threshold_uncertainty_score":0.99997735},"labels":[],"label_agreement":null},{"id":"W2105293385","doi":"10.1128/iai.05674-11","title":"OmpT Outer Membrane Proteases of Enterohemorrhagic and Enteropathogenic Escherichia coli Contribute Differently to the Degradation of Human LL-37","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Proteases; Bacterial outer membrane; Microbiology; Enteropathogenic Escherichia coli; Escherichia coli; Innate immune system; Biochemistry; Gene; Enzyme","score_opus":0.026502669562728735,"score_gpt":0.2696263557390513,"score_spread":0.24312368617632257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105293385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986065,0.0003096029,0.00042584955,0.000042113952,0.00004678756,0.00037307944,0.000020854675,0.0000056533922,0.0001695627],"genre_scores_gemma":[0.99927294,0.00034665197,0.00007668193,0.000053189295,0.000019629142,0.000047935842,0.000020672509,0.000006404911,0.00015591765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932927,0.00018930322,0.00017305388,0.0001226614,0.00007507839,0.00011065064],"domain_scores_gemma":[0.9995173,0.000013532956,0.00009308846,0.0001970988,0.00013579494,0.000043150627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022028158,0.000096732496,0.0001429633,0.000030490299,0.00012777999,0.000010729246,0.000073624455,0.000047710713,0.000014051777],"category_scores_gemma":[0.0001258994,0.00007023882,0.000041820356,0.00006814946,0.000128964,0.0000068618892,0.00019182071,0.00008856554,5.856806e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011780407,0.00013154602,0.066995054,0.000055565277,0.0000703094,1.9619775e-7,0.00021694697,2.3356417e-7,0.9315525,0.000026159416,0.000032744043,0.00080091495],"study_design_scores_gemma":[0.00045274888,0.0007338977,0.40021047,0.000019957706,0.000024032432,0.0000034877974,0.00008492433,0.0000120598925,0.5980971,0.000014825569,0.0002821123,0.00006441716],"about_ca_topic_score_codex":0.00056268094,"about_ca_topic_score_gemma":0.00028981196,"teacher_disagreement_score":0.33345547,"about_ca_system_score_codex":0.0000061493665,"about_ca_system_score_gemma":0.000012925642,"threshold_uncertainty_score":0.2864256},"labels":[],"label_agreement":null},{"id":"W2105421170","doi":"10.1128/iai.01717-06","title":"Resistance of<i>Francisella tularensis</i>Strains against Reactive Nitrogen and Oxygen Species with Special Reference to the Role of KatG","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; Umeå Universitet","keywords":"Francisella tularensis; Virulence; Microbiology; Tularemia; Biology; Pathogen; Francisella; Virulence factor; Intracellular parasite; Virology; Mutant; Bacteria; Gene; Genetics","score_opus":0.011022137086623567,"score_gpt":0.23739114649590673,"score_spread":0.22636900940928317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105421170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97796917,0.000353927,0.00024115943,0.000028095012,0.000037596466,0.00016318687,0.00003839395,0.000003146235,0.021165313],"genre_scores_gemma":[0.99903154,0.00053747563,0.00009129302,0.00003621585,0.0001505405,0.000003305395,0.000023897097,0.000007269564,0.00011843928],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999383,0.00006357563,0.00015421526,0.0001432024,0.00011106013,0.0001449842],"domain_scores_gemma":[0.99943674,0.000023044719,0.00007433425,0.00021800281,0.00018649329,0.00006137166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038695143,0.00009355147,0.00013300788,0.000042030264,0.0001223407,0.0000145475315,0.000070982795,0.000076053206,0.0000097651555],"category_scores_gemma":[0.000082512095,0.00006733529,0.00002780405,0.00013156737,0.00020791175,0.0000056578847,0.000072259725,0.00011428758,7.3248935e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064763165,0.00003823282,0.009217576,0.000016385253,0.00004042602,4.7028735e-7,0.00028569988,0.0000014494492,0.9811996,0.00023378617,0.000057784826,0.008260911],"study_design_scores_gemma":[0.0003116728,0.00028085324,0.22952919,0.000019055786,0.000009694507,0.000004541583,0.00030135608,6.9336954e-7,0.64889854,0.00010425131,0.12044961,0.00009056155],"about_ca_topic_score_codex":0.00017784984,"about_ca_topic_score_gemma":0.001926547,"teacher_disagreement_score":0.3323011,"about_ca_system_score_codex":0.000008901771,"about_ca_system_score_gemma":0.000036924554,"threshold_uncertainty_score":0.27458537},"labels":[],"label_agreement":null},{"id":"W2105437330","doi":"10.1128/iai.01789-06","title":"A Defined O-Antigen Polysaccharide Mutant of<i>Francisella tularensis</i>Live Vaccine Strain Has Attenuated Virulence while Retaining Its Protective Capacity","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"U.S. Food and Drug Administration; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention","keywords":"Francisella tularensis; Virulence; Attenuated vaccine; Microbiology; Tularemia; Biology; Virology; Mutant; Pathogen; Immune system; Immunology; Gene; Genetics","score_opus":0.03668214003129684,"score_gpt":0.2639548424454046,"score_spread":0.2272727024141078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105437330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944829,0.00028544955,0.004178274,0.000042763764,0.00011599401,0.00042108705,0.00008000555,0.000022785416,0.00037075675],"genre_scores_gemma":[0.99931705,0.00034758088,0.000102055965,0.000052969892,0.00008502685,0.000013558988,0.00004053172,0.000018553788,0.000022648861],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986803,0.0001769873,0.00033853206,0.0002999663,0.0001634778,0.00034074855],"domain_scores_gemma":[0.9989831,0.000042148684,0.00016216551,0.0002919898,0.0003986791,0.00012195573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010729561,0.00019214945,0.00025472857,0.00009970026,0.00030975507,0.000039339808,0.00010824236,0.00021561052,0.00006852576],"category_scores_gemma":[0.0004659094,0.0001817335,0.000093248666,0.00025599953,0.00013528507,0.00001559444,0.00011865538,0.00030046474,0.000008292924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043762146,0.00008168385,0.0057944907,0.000037388992,0.000075823074,0.0000021176395,0.00036228157,0.000006409814,0.9850152,0.000035242756,0.000012092907,0.00813966],"study_design_scores_gemma":[0.00088841113,0.0005251867,0.12752485,0.000039023955,0.000017357082,0.00003540863,0.000112247755,0.000095988304,0.86935574,0.00008230696,0.0011167064,0.00020675991],"about_ca_topic_score_codex":0.0014740708,"about_ca_topic_score_gemma":0.0004956872,"teacher_disagreement_score":0.121730365,"about_ca_system_score_codex":0.000027010452,"about_ca_system_score_gemma":0.00008577312,"threshold_uncertainty_score":0.74108773},"labels":[],"label_agreement":null},{"id":"W2105546486","doi":"10.1128/iai.68.9.5462-5465.2000","title":"Role of Inducible Nitric Oxide Synthase in Resistance to<i>Mycobacterium leprae</i>in Mice","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bioactive Compounds and Antitumor Agents","field":"Pharmacology, Toxicology and Pharmaceutics","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Mycobacterium leprae; Leprosy; Nitric oxide synthase; Biology; Immunity; Nitric oxide; Microbiology; Immunology; Mycobacterium; Bacteria; Immune system; Genetics","score_opus":0.05422806203598708,"score_gpt":0.3700707771236951,"score_spread":0.31584271508770806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105546486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889781,0.000468012,0.0000035170206,0.00010106659,0.00010946058,0.00017805275,0.000014303073,0.000019106297,0.010128381],"genre_scores_gemma":[0.99820817,0.0008110507,0.000031230134,0.0003367099,0.000020967542,0.000016651682,0.0000056304825,0.0000072778294,0.00056231493],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989617,0.00036478086,0.0002548691,0.00016566679,0.000052318395,0.0002006895],"domain_scores_gemma":[0.9996082,0.00010558337,0.000056623125,0.000116263094,0.000036051704,0.000077273246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045357263,0.00011279528,0.00018550752,0.0002021452,0.00009791142,0.000011292707,0.000079620564,0.00013774872,0.00079149957],"category_scores_gemma":[0.000047151007,0.000119688426,0.000033518365,0.0004897622,0.00007644264,0.00013548008,0.000035212855,0.00048169662,0.000036265585],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059583934,0.0007401968,0.4282772,0.00004708824,0.000022056753,0.000006951708,0.00040784312,0.00006629684,0.557149,0.000089738154,0.00023235272,0.012365447],"study_design_scores_gemma":[0.0008927208,0.00004805259,0.8414256,0.000041774732,0.000012134046,0.0000066803436,0.000083158426,0.0000752644,0.10301573,0.00017156957,0.054095253,0.00013204079],"about_ca_topic_score_codex":0.0014387226,"about_ca_topic_score_gemma":0.0008164192,"teacher_disagreement_score":0.45413327,"about_ca_system_score_codex":0.000050699156,"about_ca_system_score_gemma":0.000027087654,"threshold_uncertainty_score":0.8666366},"labels":[],"label_agreement":null},{"id":"W2105679191","doi":"10.1128/iai.00932-07","title":"Identification of a Wzy Polymerase Required for Group IV Capsular Polysaccharide and Lipopolysaccharide Biosynthesis in <i>Vibrio vulnificus</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Biology; Mutant; Virulence; Vibrio vulnificus; Gene; Complementation; Genetics; Microbiology; Locus (genetics); Bacterial capsule; Polymerase; Bacteria","score_opus":0.01232737922386944,"score_gpt":0.2790750635019115,"score_spread":0.2667476842780421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105679191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962782,0.00076340785,0.0023947258,0.000089018205,0.00009253015,0.00030490014,0.0000335431,0.000011260335,0.00003241582],"genre_scores_gemma":[0.9985328,0.0011591036,0.000087296736,0.00004007849,0.000054821863,0.000030160982,0.000026947739,0.0000129472155,0.000055900975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990455,0.000084894644,0.00034293756,0.00022987319,0.00008076953,0.00021602518],"domain_scores_gemma":[0.9994301,0.000060395003,0.00013024456,0.00023206093,0.00008596209,0.00006122377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009285885,0.00012400241,0.00017129924,0.00016007044,0.00014426223,0.000031490337,0.000063148684,0.000114002505,0.000003632493],"category_scores_gemma":[0.0004628468,0.00012514913,0.000052086853,0.00011471971,0.00015821512,0.000020604353,0.000104371764,0.00008360859,5.6821636e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023454867,0.00008511216,0.011514364,0.000058545793,0.00004221009,4.862827e-7,0.00010616377,4.5291574e-7,0.98116815,0.00007077393,0.000024875902,0.0066942903],"study_design_scores_gemma":[0.0006107361,0.00019781929,0.09979743,0.000020054762,0.000016619462,0.000008590324,0.00015694163,0.000030328743,0.8983341,0.00006867546,0.0006380416,0.00012069096],"about_ca_topic_score_codex":0.0020214312,"about_ca_topic_score_gemma":0.0010294897,"teacher_disagreement_score":0.08828306,"about_ca_system_score_codex":0.000019777992,"about_ca_system_score_gemma":0.000023951125,"threshold_uncertainty_score":0.5103433},"labels":[],"label_agreement":null},{"id":"W2105844233","doi":"10.1128/iai.68.9.5139-5145.2000","title":"<i>Babesia bovis</i>-Stimulated Macrophages Express Interleukin-1β, Interleukin-12, Tumor Necrosis Factor Alpha, and Nitric Oxide and Inhibit Parasite Replication In Vitro","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Babesia bovis; Tumor necrosis factor alpha; In vitro; Interleukin; Nitric oxide; Microbiology; Virology; Immunology; Interleukin 12; Cytokine; Babesiosis; Cytotoxic T cell; Biochemistry","score_opus":0.010055078257958257,"score_gpt":0.24460258128446044,"score_spread":0.23454750302650218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105844233","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964351,0.0024050677,0.000028640012,0.000042451873,0.00012029641,0.000448312,0.00006466062,0.00021391266,0.0002415723],"genre_scores_gemma":[0.9978305,0.0011187391,0.000017373084,0.0003037784,0.000016714364,0.00006751602,0.000117189586,0.000032033353,0.0004961664],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980639,0.0004671666,0.00048626526,0.00056510704,0.000044555007,0.00037299562],"domain_scores_gemma":[0.9990029,0.00020377451,0.00016669084,0.0004739544,0.00007370192,0.00007898713],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024316387,0.00034926966,0.00042312793,0.00034177347,0.00036580232,0.00012350241,0.00010299412,0.00024468146,0.0004031141],"category_scores_gemma":[0.00016774914,0.00034722761,0.00007236541,0.00029050084,0.00034521357,0.0004282727,0.00012606177,0.00056929555,0.00006817567],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006896289,0.0003475842,0.15383837,0.00005624816,0.00010822087,0.000008070977,0.0006065959,0.000005463808,0.81010085,0.000008605622,0.0001309005,0.034099426],"study_design_scores_gemma":[0.0022461868,0.00019467736,0.79077816,0.00007868622,0.000061992316,0.00024027648,0.00005441163,0.00004688631,0.20164712,0.00008142243,0.004233229,0.0003369679],"about_ca_topic_score_codex":0.007785376,"about_ca_topic_score_gemma":0.00021866719,"teacher_disagreement_score":0.63693976,"about_ca_system_score_codex":0.00013570926,"about_ca_system_score_gemma":0.000048201564,"threshold_uncertainty_score":0.99989796},"labels":[],"label_agreement":null},{"id":"W2106079980","doi":"10.1128/iai.00786-08","title":"Identification of a Bile-Induced Exopolysaccharide Required for<i>Salmonella</i>Biofilm Formation on Gallstone Surfaces","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of Victoria; University of British Columbia","funders":"National Institutes of Health; Division of Graduate Education; Michael Smith Health Research BC; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; Ohio State University","keywords":"Biofilm; Microbiology; Salmonella enterica; Gallstones; Biology; Salmonella; Gallbladder; Cholesterol; Serotype; Bacteria; Biochemistry; Internal medicine; Medicine","score_opus":0.02672325130753721,"score_gpt":0.2765426639459475,"score_spread":0.2498194126384103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106079980","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696344,0.00006568636,0.0023081882,0.000025888701,0.00017926622,0.00023513882,0.000013474018,0.000015409654,0.00019353161],"genre_scores_gemma":[0.99897766,0.0005890351,0.00008790291,0.000027069605,0.000038325186,0.000009802859,0.00007569898,0.000009963203,0.00018452162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934447,0.00006658336,0.0002757078,0.00014174904,0.00007037847,0.000101118945],"domain_scores_gemma":[0.9993755,0.000019763986,0.00020703874,0.0002466617,0.00012378987,0.000027244005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022503531,0.000094456234,0.00011316709,0.00005402941,0.00017865257,0.000013228691,0.00005656159,0.00011189983,0.000004646044],"category_scores_gemma":[0.00013228877,0.000092795795,0.00005524319,0.0000764349,0.00008030595,0.00001871503,0.000024954568,0.000054421744,0.0000032681014],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016778854,0.000070633614,0.0065205386,0.000035209352,0.000017391116,1.1926966e-7,0.00008393884,0.000012466117,0.9924212,0.000044065575,0.00013213942,0.0004944744],"study_design_scores_gemma":[0.0003727504,0.00030077342,0.12207065,0.000015561214,0.0000093994995,0.000015731173,0.000047040692,0.0001455208,0.87647337,0.000047131172,0.00040934636,0.00009271254],"about_ca_topic_score_codex":0.00012290342,"about_ca_topic_score_gemma":0.00002860206,"teacher_disagreement_score":0.11594785,"about_ca_system_score_codex":0.000014820827,"about_ca_system_score_gemma":0.000024412595,"threshold_uncertainty_score":0.37841025},"labels":[],"label_agreement":null},{"id":"W2106121058","doi":"10.1128/iai.69.7.4661-4666.2001","title":"Distribution of Quorum-Sensing Genes in the <i>Burkholderia cepacia</i> Complex","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"","keywords":"Burkholderia cepacia complex; Burkholderia; Quorum sensing; Biology; Homoserine; Microbiology; Lactone; Bacteria; Gene; Genetics; Virulence; Biochemistry","score_opus":0.021613082485976237,"score_gpt":0.2558108229150816,"score_spread":0.23419774042910538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106121058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986666,0.00011831065,0.00021971292,0.00012864196,0.000112844034,0.00007382659,0.000008252388,0.000005291012,0.00066654145],"genre_scores_gemma":[0.9990183,0.0005581634,0.000035323625,0.00012823105,0.00006973972,6.2357145e-7,0.0001726367,0.000003988637,0.000012992399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994966,0.0001310968,0.00013757941,0.000089193505,0.00004105437,0.00010448366],"domain_scores_gemma":[0.999725,0.000010251964,0.000055553803,0.00015250444,0.00004122535,0.0000154567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021988431,0.000071316616,0.00008262085,0.00001824771,0.00011415221,0.00002176657,0.00003400661,0.00007432121,0.0000063171215],"category_scores_gemma":[0.000033641307,0.00005651242,0.000034715056,0.000100696554,0.000079287915,0.000005095569,0.00003556528,0.00007001931,8.372157e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004027739,0.000034262775,0.012727039,0.000005237368,0.000006295139,5.454263e-7,0.000048031838,0.000003571093,0.97816557,0.000046730092,0.00014315877,0.008779304],"study_design_scores_gemma":[0.00046262535,0.00018827428,0.6295372,0.000017209575,0.000010950226,0.00012429504,0.0001900913,0.00007007884,0.27544886,0.00003205664,0.09378596,0.0001323402],"about_ca_topic_score_codex":0.0010789774,"about_ca_topic_score_gemma":0.00035792243,"teacher_disagreement_score":0.70271665,"about_ca_system_score_codex":0.0000057608772,"about_ca_system_score_gemma":0.000009941643,"threshold_uncertainty_score":0.23045097},"labels":[],"label_agreement":null},{"id":"W2106208520","doi":"10.1128/iai.72.9.5522-5525.2004","title":"The <i>Salmonella enterica</i> Serovar Typhimurium Divalent Cation Transport Systems MntH and SitABCD Are Essential for Virulence in an <i>Nramp1</i> <sup>G169</sup> Murine Typhoid Model","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; Canadian Institutes of Health Research; Ohio State University; Howard Hughes Medical Institute","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Virulence; Enterobacteriaceae; Divalent; Intracellular; Serotype; Typhoid fever; Gene; Bacteria; Biochemistry; Escherichia coli; Genetics; Chemistry","score_opus":0.0220699989364729,"score_gpt":0.24379133917226983,"score_spread":0.22172134023579693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106208520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784446,0.00046877158,0.00035405467,0.0006347737,0.00014833537,0.00040375904,0.000040758357,0.0000500409,0.00005507517],"genre_scores_gemma":[0.9978625,0.001599724,0.000024118222,0.00021296347,0.000112307855,0.00006897922,0.000084315885,0.0000022363195,0.00003281706],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99890494,0.00017123204,0.0003057908,0.00027447077,0.00008899119,0.00025456763],"domain_scores_gemma":[0.9994385,0.00014332,0.00012573258,0.00012645978,0.00007936412,0.000086628046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005466615,0.00016361142,0.00021892677,0.000016346738,0.0004560671,0.0000651915,0.00015238501,0.00012219539,0.0000041404546],"category_scores_gemma":[0.00004367865,0.00007323817,0.00005521274,0.00014838327,0.000117015945,0.00020351485,0.00006477425,0.00017155464,0.0000021240267],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091745344,0.0011138028,0.7131091,0.00018896327,0.00006632527,0.0000049157657,0.0017333835,0.021026757,0.24235164,0.0011965744,0.00015585446,0.018135289],"study_design_scores_gemma":[0.0010195054,0.0006394948,0.9771137,0.00007247732,0.000041043135,0.000052863925,0.0009905044,0.012856733,0.001733949,0.0022752762,0.0028320614,0.00037236908],"about_ca_topic_score_codex":0.0037926417,"about_ca_topic_score_gemma":0.0020275672,"teacher_disagreement_score":0.26400468,"about_ca_system_score_codex":0.000036863996,"about_ca_system_score_gemma":0.000010111624,"threshold_uncertainty_score":0.5733365},"labels":[],"label_agreement":null},{"id":"W2106226571","doi":"10.1128/iai.71.4.2272-2275.2003","title":"Mucosal Immunization with a Genetically Engineered Pertussis Toxin S1 Fragment-Cholera Toxin Subunit B Chimeric Protein","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Cholera toxin; Biology; Toxin; Pertussis toxin; Diphtheria toxin; Protein subunit; Microbiology; Virology; Immunization; Microbial toxins; Vibrio cholerae; Bordetella pertussis; G protein; Immunology; Antibody; Bacteria; Genetics; Gene; Receptor","score_opus":0.008851576178587223,"score_gpt":0.21267704793529119,"score_spread":0.20382547175670396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106226571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946857,0.00041597435,0.002319952,0.00012197922,0.00040656116,0.00039482585,0.000009520325,0.00015295047,0.0014924991],"genre_scores_gemma":[0.99817955,0.00020929314,0.00020156686,0.00007526022,0.000026056014,0.000078061734,0.0001325292,0.00002567038,0.0010719968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988323,0.00038302835,0.00026490728,0.00021932696,0.000023589546,0.00027688692],"domain_scores_gemma":[0.99938,0.00004504846,0.000093487826,0.00030692876,0.00013409444,0.00004045114],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001907811,0.00023505994,0.00023917179,0.00017505977,0.0005323178,0.000070179034,0.00006736559,0.00022837419,0.0023685421],"category_scores_gemma":[0.00011198611,0.00019445304,0.000054999793,0.00037336707,0.00011056664,0.00019563753,0.000039340342,0.000396333,0.0001541112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013981208,0.0004070802,0.007474051,0.000023858553,0.00017963868,4.988399e-7,0.00034414686,0.000023740684,0.98389864,0.0010776679,0.00012415528,0.0063067195],"study_design_scores_gemma":[0.005072529,0.0017969724,0.25487018,0.000107336906,0.00015186622,0.00045637658,0.0002450896,0.00004979981,0.5365119,0.00011840536,0.19978274,0.0008367821],"about_ca_topic_score_codex":0.0009529272,"about_ca_topic_score_gemma":0.00008015317,"teacher_disagreement_score":0.4473867,"about_ca_system_score_codex":0.000039947303,"about_ca_system_score_gemma":0.00005588556,"threshold_uncertainty_score":0.99854344},"labels":[],"label_agreement":null},{"id":"W2106362526","doi":"10.1128/iai.00854-13","title":"The Mucin Muc2 Limits Pathogen Burdens and Epithelial Barrier Dysfunction during Salmonella enterica Serovar Typhimurium Colitis","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":206,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Salmonella enterica; Microbiology; Mucin; Biology; Salmonella; Serotype; Pathogen; Mucin 2; Colitis; Mucus; Enterobacteriaceae; Bacteria; Immunology; Escherichia coli","score_opus":0.009931461047301204,"score_gpt":0.22369139473672714,"score_spread":0.21375993368942595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106362526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99702495,0.0002442716,0.000038596976,0.0011960919,0.00049401674,0.0003770217,0.0000103157545,0.00009484842,0.0005198888],"genre_scores_gemma":[0.99657696,0.0022879287,0.0000181885,0.00029319193,0.0001592157,0.00005650994,0.000007869162,0.000017825494,0.0005823277],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989743,0.0002013688,0.00023826202,0.00019083849,0.00011670581,0.00027847462],"domain_scores_gemma":[0.99924225,0.00006480539,0.00007895459,0.00023055571,0.0002529727,0.00013044087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025432493,0.00016658971,0.0002072542,0.000076942124,0.0006813278,0.000054159314,0.000033258155,0.00011708979,0.000061216306],"category_scores_gemma":[0.0002465991,0.00012286278,0.000046079767,0.00010734436,0.00022026939,0.00013222966,0.000095888114,0.0003991553,0.00005986424],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070666306,0.0001674021,0.7540711,0.00010785919,0.0005983853,0.000015427973,0.0016240355,0.0000017651287,0.22313581,0.000016754184,0.0010604358,0.018494358],"study_design_scores_gemma":[0.0013995062,0.000463832,0.98838204,0.00004505585,0.000081638034,0.00029269137,0.00024439368,0.000059955626,0.001704621,0.00002929501,0.0072086896,0.00008825967],"about_ca_topic_score_codex":0.0010510025,"about_ca_topic_score_gemma":0.0001469045,"teacher_disagreement_score":0.23431097,"about_ca_system_score_codex":0.0000695776,"about_ca_system_score_gemma":0.000017276232,"threshold_uncertainty_score":0.52402914},"labels":[],"label_agreement":null},{"id":"W2106521622","doi":"10.1128/iai.73.10.7027-7031.2005","title":"Cloning Vectors and Fluorescent Proteins Can Significantly Inhibit <i>Salmonella enterica</i> Virulence in Both Epithelial Cells and Macrophages: Implications for Bacterial Pathogenesis Studies","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Salmonella enterica; Biology; Salmonella; Virulence; Microbiology; Pathogenesis; Plasmid; Serotype; Cloning (programming); Enterobacteriaceae; Virology; Escherichia coli; Bacteria; Gene; Immunology; Genetics","score_opus":0.03495279610022447,"score_gpt":0.2687003053789285,"score_spread":0.233747509278704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106521622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980371,0.0005327009,0.000015348669,0.00069988845,0.00010617668,0.0004451541,0.00012103439,0.000033034794,0.000009577044],"genre_scores_gemma":[0.99598694,0.003413722,0.00011048399,0.00018960422,0.00015961801,0.000101103935,0.000023796314,0.0000018804161,0.0000128257525],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989789,0.00021126024,0.0002662194,0.00027761937,0.00003724782,0.00022872267],"domain_scores_gemma":[0.9994316,0.00028678757,0.00010372318,0.000054898857,0.00004440488,0.000078600904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003518318,0.00015466932,0.00024333019,0.00002424803,0.00033877106,0.000048479847,0.000053150587,0.00008861149,0.000009110633],"category_scores_gemma":[0.000087122055,0.000078827434,0.00003825086,0.00012969782,0.0001520603,0.00009151797,0.000085000844,0.00010677893,9.06446e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051174553,0.0000647491,0.084105924,0.000015937365,0.0000111710415,2.704551e-7,0.00028652357,0.0000016721176,0.8806682,0.000020907606,0.000021031025,0.034752414],"study_design_scores_gemma":[0.00032589608,0.00033381823,0.93734306,0.000025874402,0.000016549971,0.000013431729,0.00024798786,0.000020113923,0.05902523,0.00014633988,0.0023338161,0.00016786183],"about_ca_topic_score_codex":0.0014062505,"about_ca_topic_score_gemma":0.0020118237,"teacher_disagreement_score":0.85323715,"about_ca_system_score_codex":0.00003500189,"about_ca_system_score_gemma":0.0000069977173,"threshold_uncertainty_score":0.32144892},"labels":[],"label_agreement":null},{"id":"W2106564977","doi":"10.1128/iai.01383-07","title":"Aggregation via the Red, Dry, and Rough Morphotype Is Not a Virulence Adaptation in <i>Salmonella enterica</i> Serovar Typhimurium","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Children's Hospital; University of British Columbia; University of Victoria; University of Calgary","funders":"","keywords":"Salmonella enterica; Biology; Salmonella; Virulence; Microbiology; Serotype; Fimbria; Host adaptation; Enterobacteriaceae; Host (biology); Pilus; Immune system; Biofilm; Bacteria; Escherichia coli; Gene; Immunology; Ecology; Genetics","score_opus":0.04003908498037804,"score_gpt":0.22993376182506298,"score_spread":0.18989467684468495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106564977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99815714,0.00019561496,0.000057266505,0.0010250037,0.00011484478,0.00012937412,0.000004401846,0.000030921434,0.0002854405],"genre_scores_gemma":[0.99667144,0.0022085407,0.000024468689,0.0009314601,0.000056340657,0.0000122626425,0.00001666891,8.544643e-7,0.000077956814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991677,0.00026028286,0.00018800831,0.00017501556,0.000069241905,0.00013975237],"domain_scores_gemma":[0.9995854,0.00018222761,0.00009072765,0.00006198772,0.00004271223,0.00003696088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002885437,0.0001029365,0.00012849686,0.0000143058605,0.00031051636,0.000020427042,0.000063221756,0.00009207365,0.00005784353],"category_scores_gemma":[0.0000578542,0.000043249725,0.000031465068,0.00023356789,0.00012144627,0.00015186585,0.00005125022,0.00017444366,0.000012783648],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001885543,0.00011426019,0.7763409,0.000008504352,0.00001437499,0.0000038903627,0.0013902925,0.000020403426,0.121517695,0.00004651476,0.0002564153,0.100098185],"study_design_scores_gemma":[0.0001537023,0.00016337424,0.99141157,0.000010602438,0.000005323965,0.00006432046,0.000095456155,0.0013073172,0.0021358053,0.00040366582,0.00415157,0.00009731992],"about_ca_topic_score_codex":0.008303449,"about_ca_topic_score_gemma":0.0008190438,"teacher_disagreement_score":0.21507064,"about_ca_system_score_codex":0.000016650854,"about_ca_system_score_gemma":0.0000039863585,"threshold_uncertainty_score":0.9983004},"labels":[],"label_agreement":null},{"id":"W2106841274","doi":"10.1128/iai.01106-06","title":"<i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> PtpA Is an Endogenous Tyrosine Phosphatase Secreted during Infection","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Protein tyrosine phosphatase; Paratuberculosis; Tyrosine; Phosphorylation; Phosphatase; Biochemistry; Microbiology; Tyrosine phosphorylation; Mycobacterium; Receptor tyrosine kinase; Kinase; Genetics; Bacteria","score_opus":0.024869615492734247,"score_gpt":0.2664172580650316,"score_spread":0.24154764257229733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106841274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946943,0.00072294904,0.00003371497,0.00016836287,0.00033437478,0.00050636777,0.00011418401,0.00028270492,0.003143035],"genre_scores_gemma":[0.99533665,0.002526706,0.000033111453,0.0005402223,0.00038620867,0.00007736311,0.0008114249,0.00003966276,0.00024867803],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982136,0.00021556758,0.00039121084,0.00038426442,0.00029236602,0.0005030314],"domain_scores_gemma":[0.9986455,0.000061268125,0.00011762759,0.0005452296,0.00027123283,0.00035916988],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032596517,0.00030387146,0.0003699631,0.00024684193,0.000628897,0.00017770067,0.000057782494,0.00021354406,0.00085021456],"category_scores_gemma":[0.0001006871,0.00029173266,0.00013920719,0.00051598944,0.00013075689,0.0006334933,0.00008594359,0.0005460938,0.00012770895],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047127204,0.00088662637,0.61250025,0.00027973842,0.00006777678,0.000041793104,0.00014041104,0.0000034292414,0.38262045,0.00004905018,0.0017998297,0.0011393881],"study_design_scores_gemma":[0.0019116198,0.00051810144,0.6716502,0.00006308922,0.000108425775,0.0005148903,0.000012278798,0.00004698995,0.31544548,0.0000351325,0.009461578,0.00023223218],"about_ca_topic_score_codex":0.028065778,"about_ca_topic_score_gemma":0.00065253477,"teacher_disagreement_score":0.067174986,"about_ca_system_score_codex":0.00015947415,"about_ca_system_score_gemma":0.00008251559,"threshold_uncertainty_score":0.9999535},"labels":[],"label_agreement":null},{"id":"W2107094749","doi":"10.1128/iai.73.10.6249-6259.2005","title":"SseJ Deacylase Activity by <i>Salmonella enterica</i> Serovar Typhimurium Promotes Virulence in Mice","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; Ministero dello Sviluppo Economico; University of Toronto; Hospital for Sick Children; Ontario Innovation Trust; University of Washington","keywords":"Salmonella enterica; Biology; Virulence; Effector; Type three secretion system; Vacuole; Microbiology; Mutant; Salmonella; Secretion; Pathogenicity island; Bacterial outer membrane; Wild type; Cell biology; Cytoplasm; Biochemistry; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.014979349474638564,"score_gpt":0.23400690048528813,"score_spread":0.21902755101064958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107094749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764997,0.0002376696,0.000013090049,0.0010354839,0.00009300612,0.00013158949,0.000011139965,0.00006746064,0.0007606202],"genre_scores_gemma":[0.99857295,0.00062678236,0.000020112586,0.00052468566,0.00008913886,0.000013974352,0.000021442236,0.000001066284,0.00012987103],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894416,0.00032475506,0.0001858655,0.00023605408,0.000063409825,0.00024572253],"domain_scores_gemma":[0.99953765,0.00020923368,0.00008476459,0.000059582762,0.000029903991,0.00007885099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036533948,0.00014278702,0.00018692888,0.000015833148,0.0001620244,0.000032566226,0.0001003333,0.00012476674,0.00013685161],"category_scores_gemma":[0.00007981096,0.00006838877,0.00004829684,0.0002287265,0.00007775794,0.00022921365,0.0000772478,0.00025832147,0.00004655315],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005164662,0.00028082074,0.13869934,0.0000054627762,0.0000057779266,8.046644e-7,0.00006167044,0.0000017295605,0.77869964,0.000008389834,0.00051550777,0.081669234],"study_design_scores_gemma":[0.0002238617,0.00020866665,0.9091224,0.00001530031,0.000006319466,0.000025372185,0.00003576653,0.00021996048,0.055550214,0.000112697584,0.03427241,0.00020705524],"about_ca_topic_score_codex":0.0046371296,"about_ca_topic_score_gemma":0.0014341702,"teacher_disagreement_score":0.77042305,"about_ca_system_score_codex":0.000037195652,"about_ca_system_score_gemma":0.0000046651885,"threshold_uncertainty_score":0.70099837},"labels":[],"label_agreement":null},{"id":"W2107205656","doi":"10.1128/iai.73.2.1209-1213.2005","title":"Peroxisome Proliferator-Activated Receptor γ and Retinoid X Receptor Agonists Have Minimal Effects on the Interaction of Endothelial Cells with<i>Plasmodium falciparum-</i>Infected Erythrocytes","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Peroxisome Proliferator-Activated Receptors","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Biology; Peroxisome proliferator-activated receptor; Plasmodium falciparum; Retinoid X receptor; Receptor; Retinoid; Virology; Malaria; Immunology; Retinoic acid; Cell culture; Biochemistry; Nuclear receptor; Transcription factor; Genetics","score_opus":0.00921849773408415,"score_gpt":0.23358787146566068,"score_spread":0.22436937373157653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107205656","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981815,0.00010391375,0.00003701721,0.0002759328,0.00031942365,0.00062668574,0.000055994085,0.00005778923,0.0003417464],"genre_scores_gemma":[0.9983388,0.00058656686,0.00016036509,0.00024931523,0.00030654424,0.00010340792,0.00008799377,0.000047623926,0.00011937825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982457,0.00048313837,0.00033949185,0.00042791848,0.00018863115,0.00031509192],"domain_scores_gemma":[0.9988691,0.00015830605,0.00027655467,0.0003643849,0.00020426973,0.00012738624],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00028571367,0.00037574992,0.000320042,0.00012510753,0.00037483667,0.000084518164,0.00011387161,0.00029567417,0.00006461337],"category_scores_gemma":[0.00022759609,0.00027631485,0.00008276583,0.00017352571,0.000295097,0.00004911171,0.00011235137,0.0005019814,0.000016464308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001621053,0.00025586467,0.0071977563,0.00006312958,0.00016090374,2.794278e-7,0.00026095824,0.000022045575,0.9868452,0.000015829793,0.0005964583,0.0029605117],"study_design_scores_gemma":[0.0013164481,0.001963968,0.002669935,0.00009277212,0.00003052954,0.000028631664,0.00012357852,0.000046285768,0.9706777,0.000003141344,0.022737036,0.00030999532],"about_ca_topic_score_codex":0.000105624786,"about_ca_topic_score_gemma":0.000039810202,"teacher_disagreement_score":0.022140577,"about_ca_system_score_codex":0.00006871278,"about_ca_system_score_gemma":0.00007618209,"threshold_uncertainty_score":0.9999689},"labels":[],"label_agreement":null},{"id":"W2107359483","doi":"10.1128/iai.00039-09","title":"<i>Salmonella enterica</i> Serovar Enteritidis Pathogenicity Island 1 Is Not Essential for but Facilitates Rapid Systemic Spread in Chickens","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation","keywords":"Biology; Salmonella enterica; Salmonella enteritidis; Microbiology; Pathogenicity island; Salmonella; Serotype; Colonization; Enterobacteriaceae; Mutant; Pathogen; Type three secretion system; Virology; Bacteria; Escherichia coli; Gene; Genetics","score_opus":0.02182933224611975,"score_gpt":0.2440468704998979,"score_spread":0.22221753825377816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107359483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998019,0.0003320343,0.000071000184,0.00055910903,0.00020701773,0.00031758926,0.00023164367,0.000058552152,0.00020406318],"genre_scores_gemma":[0.99751365,0.0012652331,0.000016142641,0.00086885825,0.000113951406,0.000024419105,0.000108747336,0.0000010849899,0.000087901244],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870664,0.00028383813,0.00034979082,0.0002937423,0.00007021216,0.00029580036],"domain_scores_gemma":[0.9994552,0.00022869249,0.00010491041,0.0000822049,0.00005472372,0.00007423563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004150827,0.00018172132,0.0003170678,0.00002445286,0.00021314241,0.00004680289,0.000103961625,0.00015410717,0.00010928581],"category_scores_gemma":[0.00008166077,0.00009007501,0.0001371172,0.00015130258,0.000064843865,0.00011948536,0.00004267864,0.00016949959,0.000011699912],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001688347,0.0001804064,0.117644444,0.000023689023,0.0000161111,0.0000017654894,0.0002808338,9.237963e-7,0.8498086,0.000018225846,0.00036889687,0.031487323],"study_design_scores_gemma":[0.0005647215,0.00068395905,0.97605693,0.000045964072,0.000017436669,0.000095101066,0.00024078046,0.00014727737,0.01700237,0.0003783191,0.0045224107,0.00024472835],"about_ca_topic_score_codex":0.002364856,"about_ca_topic_score_gemma":0.00046137214,"teacher_disagreement_score":0.8584125,"about_ca_system_score_codex":0.000025473433,"about_ca_system_score_gemma":0.000004695119,"threshold_uncertainty_score":0.36731523},"labels":[],"label_agreement":null},{"id":"W2107371854","doi":"10.1128/iai.01187-15","title":"New Role of Nod Proteins in Regulation of Intestinal Goblet Cell Response in the Context of Innate Host Defense in an Enteric Parasite Infection","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University; Population Health Research Institute","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; McMaster University; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Wellcome Trust","keywords":"Biology; Nod; NOD1; Mucin; Goblet cell; Innate immune system; Innate lymphoid cell; NOD2; Immunology; Mucin 2; Microbiology; Immune system; Epithelium; Gene expression; Biochemistry","score_opus":0.018837638085309288,"score_gpt":0.2692175817742674,"score_spread":0.2503799436889581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107371854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985821,0.00015761935,0.00027494485,0.000021429989,0.000113135895,0.00033664357,0.00000864168,0.000008083369,0.0004973936],"genre_scores_gemma":[0.9998298,0.000037730664,0.00004233892,0.00001862648,0.000005023591,0.00001719807,0.000026990869,0.0000050522194,0.0000172386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978181,0.0013907449,0.0005130914,0.00011190669,0.000040031002,0.00012611372],"domain_scores_gemma":[0.9990042,0.00034015384,0.0002703065,0.0002183235,0.00015049278,0.000016555567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014658604,0.00010645321,0.00024818195,0.00042401656,0.000037414695,0.0000069366033,0.00005970774,0.00015118915,0.00002849922],"category_scores_gemma":[0.0007085432,0.00009169854,0.00003575995,0.00049229607,0.00013503707,0.00017242951,0.000032404932,0.00030311337,0.000005727198],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012274084,0.00058084505,0.6869071,0.000018784194,0.000006076479,6.0989237e-7,0.0038435059,0.0001160675,0.30560935,0.00020966634,0.000013533357,0.0014670432],"study_design_scores_gemma":[0.0019780875,0.0012474202,0.9037811,0.000086545275,0.00001049563,0.00003808355,0.0007724072,0.00007401657,0.09146078,0.00029359484,0.00018480902,0.000072617564],"about_ca_topic_score_codex":0.026398487,"about_ca_topic_score_gemma":0.0049090707,"teacher_disagreement_score":0.21687403,"about_ca_system_score_codex":0.000056198427,"about_ca_system_score_gemma":0.00011009035,"threshold_uncertainty_score":0.98008484},"labels":[],"label_agreement":null},{"id":"W2107543672","doi":"10.1128/iai.00686-09","title":"Interactions of Enteropathogenic <i>Escherichia coli</i> with Pediatric and Adult Intestinal Biopsy Specimens during Early Adherence","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Enteropathogenic Escherichia coli; Microbiology; Escherichia coli; Genetics","score_opus":0.009222110827152281,"score_gpt":0.25435472748038224,"score_spread":0.24513261665322997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107543672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987039,0.00024109606,0.00019058866,0.000030011906,0.000031850606,0.00011196396,0.000004590444,0.000012675337,0.00067334686],"genre_scores_gemma":[0.9983464,0.0011136296,0.00031929713,0.000030690848,0.000058258567,0.000009770322,0.0000052644173,0.0000057904062,0.00011092732],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99945104,0.00007330567,0.00012848938,0.00015150334,0.00006602092,0.00012963508],"domain_scores_gemma":[0.99955577,0.000013306957,0.000074702344,0.00013713264,0.00016378127,0.000055339136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007620451,0.00010521963,0.000105429885,0.00005193727,0.00014843848,0.000022416812,0.00004428285,0.00003599855,0.0000070382357],"category_scores_gemma":[0.0001005334,0.00009212115,0.000025892637,0.00014778569,0.000096737516,0.000013027238,0.0000756038,0.00017222352,0.0000010219308],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015758954,0.00008921884,0.22504875,0.00002539572,0.000021910226,0.0000012551965,0.00009511412,0.0000010925754,0.7741221,0.000013588796,0.000010498163,0.00041344512],"study_design_scores_gemma":[0.00050641544,0.001201437,0.9553132,0.000020402167,0.000021309663,0.000059212653,0.0000650148,0.000011779136,0.042567667,0.000011395697,0.00012040411,0.00010173003],"about_ca_topic_score_codex":0.00021270968,"about_ca_topic_score_gemma":0.00010296832,"teacher_disagreement_score":0.73155445,"about_ca_system_score_codex":0.000009959567,"about_ca_system_score_gemma":0.000024511692,"threshold_uncertainty_score":0.37565914},"labels":[],"label_agreement":null},{"id":"W2107579271","doi":"10.1128/iai.00748-07","title":"Duplicate Copies of<i>lic1</i>Direct the Addition of Multiple Phosphocholine Residues in the Lipopolysaccharide of<i>Haemophilus influenzae</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Medical Research Council","keywords":"Phosphocholine; Haemophilus influenzae; Heptose; Biology; Operon; Microbiology; Lipopolysaccharide; Mutant; Lipid A; Pasteurellaceae; Biochemistry; Gene; Immunology","score_opus":0.02311238773972732,"score_gpt":0.29106991588171155,"score_spread":0.26795752814198426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107579271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972004,0.00028375458,0.00006508733,0.00037323826,0.00011313971,0.00033776383,0.00002232897,0.000023748496,0.0015804813],"genre_scores_gemma":[0.9989049,0.0005639408,0.000010568131,0.00041850124,0.000047322592,0.000016387376,0.0000096303875,0.0000076091424,0.000021177764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99901056,0.00014865468,0.00045762942,0.00009582005,0.00015994988,0.000127376],"domain_scores_gemma":[0.9986907,0.0005140752,0.00023990669,0.0003511917,0.00017296271,0.00003111961],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009952845,0.000107714775,0.00026344572,0.00016374307,0.00015031702,0.0000060731745,0.00007432944,0.00009112012,0.00002116266],"category_scores_gemma":[0.00043192,0.00006450556,0.00009957776,0.00042099686,0.0003308895,0.000086141175,0.000034970893,0.00032187824,0.0000018114796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032823792,0.00056987506,0.50015813,0.00016545475,0.00008837473,0.0000024389753,0.002193052,0.00004912903,0.49001217,0.00038532127,0.00022219802,0.0058256187],"study_design_scores_gemma":[0.0008136327,0.00028899635,0.73105574,0.000106648535,0.000058476387,0.00005067238,0.00036271647,0.000021516655,0.26150444,0.00011551259,0.005563862,0.00005781234],"about_ca_topic_score_codex":0.004335244,"about_ca_topic_score_gemma":0.0012833072,"teacher_disagreement_score":0.2308976,"about_ca_system_score_codex":0.000021251037,"about_ca_system_score_gemma":0.00004215295,"threshold_uncertainty_score":0.6553621},"labels":[],"label_agreement":null},{"id":"W2107586768","doi":"10.1128/iai.73.12.8345-8352.2005","title":"A Mutant of<i>Francisella tularensis</i>Strain SCHU S4 Lacking the Ability To Express a 58-Kilodalton Protein Is Attenuated for Virulence and Is an Effective Live Vaccine","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; Umeå Universitet","keywords":"Francisella tularensis; Virulence; Attenuated vaccine; Biology; Tularemia; Microbiology; Mutant; Virology; Strain (injury); Pathogen; Francisella; Gene; Genetics","score_opus":0.01489172881805659,"score_gpt":0.2870663912060131,"score_spread":0.2721746623879565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107586768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963748,0.00023236302,0.0015438583,0.0002753041,0.000040832743,0.0013354499,0.00014176006,0.00001041065,0.000045239725],"genre_scores_gemma":[0.9990513,0.00015358246,0.00019403122,0.00028823022,0.00010249468,0.00014801817,0.000022360347,0.000013398919,0.00002661371],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895895,0.00021939598,0.00020538249,0.0003059914,0.00009749325,0.00021277637],"domain_scores_gemma":[0.99916077,0.00004755086,0.00007582594,0.00034711117,0.00026943427,0.00009933623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007000669,0.00015294788,0.00018803572,0.000039906656,0.0002624706,0.00004836304,0.000097252094,0.00012918815,0.00003350816],"category_scores_gemma":[0.00024025163,0.000117651485,0.00006181896,0.00011838311,0.00010520439,0.000017301683,0.00011562634,0.00015211826,0.0000020607447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005903134,0.00009860998,0.0015852033,0.00007218428,0.000030612464,1.2751909e-7,0.0009259667,0.0000048458414,0.9486697,0.000008623971,0.00003941379,0.047974452],"study_design_scores_gemma":[0.0010450952,0.0012197996,0.058212146,0.00004857369,0.000019059795,0.00000821342,0.00010482316,0.00042757002,0.93139106,0.00008598642,0.007264725,0.00017292575],"about_ca_topic_score_codex":0.00064115116,"about_ca_topic_score_gemma":0.00017449063,"teacher_disagreement_score":0.056626942,"about_ca_system_score_codex":0.000017311128,"about_ca_system_score_gemma":0.000028433695,"threshold_uncertainty_score":0.47976884},"labels":[],"label_agreement":null},{"id":"W2107825439","doi":"10.1128/iai.00188-08","title":"The Commensal <i>Streptococcus salivarius</i> K12 Downregulates the Innate Immune Responses of Human Epithelial Cells and Promotes Host-Microbe Homeostasis","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":287,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; Inimex Pharmaceuticals (Canada); Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Genome Prairie; Genome British Columbia","keywords":"Biology; Streptococcus salivarius; Flagellin; Innate immune system; Microbiology; Immune system; Secretion; Proinflammatory cytokine; Cell biology; Immunology; Inflammation; Bacteria; Streptococcus","score_opus":0.024427805015618958,"score_gpt":0.28988460170496294,"score_spread":0.26545679668934397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107825439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997495,0.0013253303,0.0000042113443,0.00026331685,0.00022733497,0.0003403177,0.00014790279,0.0000324766,0.00016414151],"genre_scores_gemma":[0.9968538,0.0019580682,0.000006339481,0.000052309268,0.000036772766,0.00001785183,0.00002320075,0.00001241986,0.001039199],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99830604,0.0009118592,0.00030538297,0.0001575637,0.00008309155,0.00023607441],"domain_scores_gemma":[0.9988543,0.000444289,0.0001384795,0.0003850811,0.00013855848,0.000039325467],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008152247,0.00015429666,0.00021233242,0.000068200556,0.0020307354,0.00009311682,0.00017626608,0.00014095752,0.0000985456],"category_scores_gemma":[0.00013109129,0.000095785465,0.0000756426,0.00016967498,0.0014635309,0.00010028783,0.00028913908,0.00046776893,0.000019188647],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021531981,0.00008860009,0.07764684,0.000024102272,0.00007879267,0.0000049469,0.00059842254,2.3211568e-7,0.9186646,0.0000868691,0.00068680133,0.0019045337],"study_design_scores_gemma":[0.00045121388,0.00022230076,0.60057306,0.000015293695,0.000012090777,0.00014566092,0.00010408386,0.000001673714,0.391388,0.000065142034,0.006935913,0.00008556918],"about_ca_topic_score_codex":0.0039840965,"about_ca_topic_score_gemma":0.0006681566,"teacher_disagreement_score":0.5272765,"about_ca_system_score_codex":0.000014769677,"about_ca_system_score_gemma":0.000034892993,"threshold_uncertainty_score":0.9992685},"labels":[],"label_agreement":null},{"id":"W2108014318","doi":"10.1128/iai.71.2.708-716.2003","title":"<i>Mycobacterium bovis</i> BCG Vaccines Exhibit Defects in Alanine and Serine Catabolism","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital; University of Toronto","funders":"","keywords":"Biology; Mycobacterium bovis; Serine; Microbiology; BCG vaccine; Alanine; Mycobacterium tuberculosis; Catabolism; Virology; Enzyme; Amino acid; Tuberculosis; Biochemistry; Vaccination; Medicine","score_opus":0.01814279844531144,"score_gpt":0.2967667828587725,"score_spread":0.2786239844134611,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108014318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952275,0.00093010283,0.000017620185,0.00067656935,0.00012681977,0.00018766888,0.00000299906,0.000040209496,0.0027904715],"genre_scores_gemma":[0.99301755,0.0057658,0.00004441373,0.00081354415,0.000055817563,0.00001608166,0.00002515191,0.000010352803,0.0002512731],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990535,0.00027280147,0.00019511029,0.0001653397,0.000059265465,0.00025397592],"domain_scores_gemma":[0.99946344,0.00010858346,0.00003452385,0.00017987934,0.00005653261,0.00015702343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005171564,0.000121070676,0.0002798902,0.0001535961,0.000091383445,0.000015771146,0.000019023837,0.00009852612,0.00011147229],"category_scores_gemma":[0.00079588004,0.000090967216,0.000030231164,0.00019733685,0.00005326301,0.00011850665,0.000044534794,0.00035486196,0.000014314494],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011542299,0.00012587257,0.96772045,0.000098192155,0.000021619197,0.000010611643,0.000098616016,0.0000010823173,0.027277885,0.00020117546,0.0011531269,0.0031759648],"study_design_scores_gemma":[0.0015128064,0.0002616469,0.9251065,0.00003421651,0.0000151705835,0.00040767808,0.00002943434,0.000032547756,0.0029456553,0.00012947354,0.069434404,0.00009043122],"about_ca_topic_score_codex":0.0031076428,"about_ca_topic_score_gemma":0.0007766147,"teacher_disagreement_score":0.06828128,"about_ca_system_score_codex":0.000027675165,"about_ca_system_score_gemma":0.00003177208,"threshold_uncertainty_score":0.46978468},"labels":[],"label_agreement":null},{"id":"W2108422054","doi":"10.1128/iai.00263-08","title":"<i>Burkholderia pseudomallei</i> Type III Secretion System Mutants Exhibit Delayed Vacuolar Escape Phenotypes in RAW 264.7 Murine Macrophages","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Burkholderia pseudomallei; Biology; Mutant; Secretion; Microbiology; Intracellular parasite; Wild type; Phenotype; Giant cell; Cell biology; Type three secretion system; Multinucleate; Intracellular; Gene; Bacteria; Genetics; Biochemistry","score_opus":0.01891670158295406,"score_gpt":0.24817280985797047,"score_spread":0.2292561082750164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108422054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99298984,0.00064698,0.00043074827,0.0000829345,0.0009093667,0.00053220266,0.0000054732673,0.00027509354,0.004127372],"genre_scores_gemma":[0.9967841,0.002156278,0.000133829,0.00015228106,0.00018804443,0.00004163853,0.00005660015,0.000037168676,0.00045008174],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99851924,0.00019126464,0.0004654359,0.00031378487,0.00019298137,0.00031726476],"domain_scores_gemma":[0.99903125,0.000051779953,0.0001366944,0.00039409476,0.00022368402,0.00016249942],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038368482,0.00027275571,0.00046074291,0.00034774255,0.0004824607,0.00003708877,0.00005447978,0.00024545746,0.00032113373],"category_scores_gemma":[0.00008383422,0.00025576525,0.00010210946,0.0007480662,0.00012095169,0.0002609811,0.00007214286,0.000501921,0.00007007271],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030028687,0.0022241217,0.2564452,0.0010013629,0.0005440027,0.00038697285,0.0024861004,0.00016365039,0.7193419,0.0006787605,0.0021150263,0.01161006],"study_design_scores_gemma":[0.010816246,0.0020653023,0.9209083,0.0006090509,0.0002916658,0.004478788,0.0007077195,0.0026188458,0.047680657,0.000035455967,0.009069445,0.0007185507],"about_ca_topic_score_codex":0.0045299097,"about_ca_topic_score_gemma":0.00022691551,"teacher_disagreement_score":0.6716612,"about_ca_system_score_codex":0.00016912521,"about_ca_system_score_gemma":0.00009194829,"threshold_uncertainty_score":0.99998945},"labels":[],"label_agreement":null},{"id":"W2108773652","doi":"10.1128/iai.73.11.7390-7397.2005","title":"Enhanced Factor H Binding to Sialylated Gonococci Is Restricted to the Sialylated Lacto-<i>N</i>-Neotetraose Lipooligosaccharide Species: Implications for Serum Resistance and Evidence for a Bifunctional Lipooligosaccharide Sialyltransferase in Gonococci","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Sialyltransferase; Sialic acid; Neisseria gonorrhoeae; Microbiology; Strain (injury); N-Acetylneuraminic acid; Neisseria; Typing; Chemistry; Biology; Biochemistry; Bacteria; Genetics","score_opus":0.05318706140150698,"score_gpt":0.31159382884032155,"score_spread":0.2584067674388146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108773652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98076993,0.00045413995,0.006554587,0.00804098,0.00074334996,0.002471796,0.0007960108,0.0001337814,0.000035423534],"genre_scores_gemma":[0.9962811,0.0007137184,0.00018830344,0.0006568754,0.00020651867,0.000832965,0.00011993779,0.000031547686,0.00096906075],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980488,0.00019499545,0.00065743754,0.0005562726,0.000028144806,0.00051438384],"domain_scores_gemma":[0.99799794,0.0009856189,0.00015567,0.00043394652,0.00032236055,0.00010445602],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038020874,0.00034421572,0.00041275186,0.00047413044,0.0010774342,0.00016233258,0.00018806173,0.00031475918,0.00021632043],"category_scores_gemma":[0.00089136144,0.00029645028,0.00013168655,0.00094326126,0.00007937325,0.0004494021,0.00008669253,0.0003971832,0.000044560602],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013408946,0.00017035296,0.0048769778,0.000051442836,0.00012243731,5.1433368e-8,0.0010865101,0.000055076,0.98301834,0.00027997454,0.0018478835,0.0071500666],"study_design_scores_gemma":[0.0026908717,0.00060497405,0.60119414,0.0002245916,0.00010369098,0.000020304808,0.000119578246,0.00003532241,0.24324882,0.0001246995,0.15110934,0.0005236748],"about_ca_topic_score_codex":0.0012083687,"about_ca_topic_score_gemma":0.0064508473,"teacher_disagreement_score":0.7397695,"about_ca_system_score_codex":0.00018182119,"about_ca_system_score_gemma":0.00012278387,"threshold_uncertainty_score":0.99994874},"labels":[],"label_agreement":null},{"id":"W2109024924","doi":"10.1128/iai.68.8.4485-4491.2000","title":"<i>Salmonella enterica</i> Serovar Typhimurium <i>waaP</i> Mutants Show Increased Susceptibility to Polymyxin and Loss of Virulence In Vivo","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Guelph","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Salmonella enterica; Mutant; Virulence; Biology; Microbiology; Polymyxin; Escherichia coli; Heptose; Polymyxin B; Bacterial outer membrane; Salmonella; Enterobacteriaceae; Plasmid; Bacteria; Gene; Genetics; Antibiotics","score_opus":0.006240716930038322,"score_gpt":0.23715353782617202,"score_spread":0.23091282089613369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109024924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99861765,0.00012064816,0.0000625234,0.00003362587,0.0000556135,0.00016297007,0.000033511216,0.000009671113,0.0009038137],"genre_scores_gemma":[0.99870473,0.0007920604,0.00010735469,0.00019111962,0.00002612437,0.0000030420802,0.00001065499,0.000010006409,0.00015490717],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99913895,0.0001513929,0.00023099488,0.00024843437,0.00006692932,0.00016332451],"domain_scores_gemma":[0.9995038,0.000017607164,0.000055699307,0.00030088495,0.000044876415,0.00007713018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025309343,0.00013149614,0.00017433129,0.00004259564,0.00006088654,0.000019166371,0.000077508164,0.000113781236,0.0001215509],"category_scores_gemma":[0.000062501815,0.00013309652,0.000031410305,0.00014235625,0.00016219553,0.000011279387,0.00007770106,0.00009442754,0.0000035702187],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028992022,0.00009868683,0.37968454,0.000027898952,0.000008725968,0.0000011153844,0.000051021405,0.000002679986,0.6183949,0.0000024624687,0.000049398033,0.0013886536],"study_design_scores_gemma":[0.0005052945,0.0002807839,0.68832093,0.000039633116,0.0000073930687,0.000021839025,0.0000398674,0.000015023503,0.30851448,0.000026513599,0.002077282,0.00015093034],"about_ca_topic_score_codex":0.0018411764,"about_ca_topic_score_gemma":0.0005928361,"teacher_disagreement_score":0.3098804,"about_ca_system_score_codex":0.000014968007,"about_ca_system_score_gemma":0.00002581984,"threshold_uncertainty_score":0.54275185},"labels":[],"label_agreement":null},{"id":"W2109031227","doi":"10.1128/iai.01085-06","title":"<i>Helicobacter pylori</i> VacA Toxin Promotes Bacterial Intracellular Survival in Gastric Epithelial Cells","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; AstraZeneca Canada","keywords":"Vacuole; Biology; Rab; Helicobacter pylori; Cell biology; Endocytic cycle; Gastric mucosa; Intracellular; Microbiology; GTPase; Endocytosis; Cytoplasm; Stomach; Cell; Biochemistry","score_opus":0.011995901684974983,"score_gpt":0.2302198469177954,"score_spread":0.2182239452328204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109031227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99621236,0.000075543816,0.00015823296,0.00057379284,0.0012105855,0.0004186028,0.000022325798,0.00012159048,0.0012069826],"genre_scores_gemma":[0.99862707,0.0002117614,0.00010968292,0.00016747676,0.00048371963,0.000029204784,0.00007829791,0.000028266288,0.00026450626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982891,0.00030298342,0.0004961351,0.0003034544,0.00016019818,0.00044812684],"domain_scores_gemma":[0.9992977,0.00007754589,0.00012043931,0.0002748308,0.00012904807,0.000100450765],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045579422,0.00028032597,0.0004533082,0.00027954392,0.00016461471,0.00004438846,0.00006128794,0.00023150211,0.00013879938],"category_scores_gemma":[0.00009305591,0.00025808904,0.00008473663,0.00036479626,0.00017305833,0.00019150588,0.000107358705,0.0007164781,0.00006384548],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049691304,0.0006083706,0.49481368,0.000046681773,0.0000957736,0.000030427429,0.00015612887,0.0000033209137,0.5013212,0.000029976653,0.0002584051,0.0021391045],"study_design_scores_gemma":[0.0039064125,0.00078349287,0.92675817,0.000055631066,0.0000954575,0.00012187997,0.00005096602,0.00003821432,0.05756975,0.000059926027,0.010358758,0.00020132374],"about_ca_topic_score_codex":0.0036759076,"about_ca_topic_score_gemma":0.0008605177,"teacher_disagreement_score":0.44375145,"about_ca_system_score_codex":0.00016204176,"about_ca_system_score_gemma":0.00004520735,"threshold_uncertainty_score":0.9999871},"labels":[],"label_agreement":null},{"id":"W2109199551","doi":"10.1128/iai.00152-08","title":"Role for Myosin II in Regulating Positioning of <i>Salmonella</i> -Containing Vacuoles and Intracellular Replication","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Universitat de Barcelona; Natural Sciences and Engineering Research Council of Canada; Burroughs Wellcome Fund","keywords":"Biology; Vacuole; Salmonella; Intracellular; Replication (statistics); Myosin; Cell biology; Microbiology; Virology; Bacteria; Cytoplasm; Genetics","score_opus":0.02694263316218881,"score_gpt":0.24227590986251754,"score_spread":0.21533327670032873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109199551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900836,0.00038772618,0.000034562996,0.00016173096,0.000022455359,0.0001314206,0.0000030515994,0.000022078768,0.00022862825],"genre_scores_gemma":[0.9994655,0.00024133183,0.00012669651,0.00006191374,0.000036876292,0.000013917487,0.00003343757,6.9405644e-7,0.000019631374],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993963,0.00010655013,0.00021220927,0.0001494281,0.000030175883,0.000105312676],"domain_scores_gemma":[0.9995568,0.00021867236,0.0001092093,0.0000477975,0.000041429623,0.000026090393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043293793,0.000065473236,0.00014122683,0.000017008291,0.00033928355,0.000007326435,0.000029770501,0.0000766308,0.00000716963],"category_scores_gemma":[0.00013132297,0.000035093628,0.000027513352,0.000111881694,0.00006173124,0.00009018797,0.00003858004,0.0000815601,1.9644662e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004001738,0.000033519125,0.34195518,0.0000055959854,0.000003827058,9.213379e-8,0.00032405814,0.000008482451,0.6280052,0.00018608222,0.0000061458527,0.029431764],"study_design_scores_gemma":[0.00018251727,0.00031116628,0.9732815,0.000024537136,0.0000049054825,0.00003458367,0.000230818,0.00061408186,0.023650182,0.0010971404,0.00049415714,0.00007441583],"about_ca_topic_score_codex":0.0017905621,"about_ca_topic_score_gemma":0.00020730842,"teacher_disagreement_score":0.6313263,"about_ca_system_score_codex":0.000010646541,"about_ca_system_score_gemma":0.0000028740462,"threshold_uncertainty_score":0.27068064},"labels":[],"label_agreement":null},{"id":"W2109362406","doi":"10.1128/iai.00588-07","title":"Analysis of<i>PRA1</i>and Its Relationship to<i>Candida albicans</i>- Macrophage Interactions","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Phagosome; Biology; Candida albicans; Phagocytosis; Phagolysosome; Macrophage; Microbiology; Corpus albicans; Molecular biology; In vitro; Biochemistry","score_opus":0.03782053552456141,"score_gpt":0.31864929179945206,"score_spread":0.2808287562748907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109362406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99386907,0.00018163268,0.00033087897,0.00013949334,0.00006184045,0.00013876134,0.000008672395,0.000028489661,0.0052411593],"genre_scores_gemma":[0.9973551,0.00028941446,0.000047422276,0.00014705776,0.000014583446,0.0000063547413,0.000017695129,0.0000049805,0.0021173737],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993875,0.00007707526,0.00021134324,0.00013475936,0.000095825664,0.00009351694],"domain_scores_gemma":[0.9993718,0.00013847767,0.000056969187,0.00018706419,0.00013255709,0.000113119306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018128421,0.000079806734,0.00023917049,0.00026762515,0.00026552996,0.0000074808045,0.00001897071,0.00004899297,0.00026158983],"category_scores_gemma":[0.0003855764,0.00007273444,0.00008831659,0.00073900743,0.00006658358,0.00011468305,0.00002204165,0.00022679206,0.000009944526],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016763264,0.00010761817,0.98588586,0.000032875047,0.00019440276,0.000002714672,0.0007070002,0.000008989499,0.01165403,0.0001622026,0.000047827267,0.0010288365],"study_design_scores_gemma":[0.00027605478,0.00011575381,0.9957211,0.00002271052,0.0003535348,0.000024854256,0.000099647914,0.0001754182,0.0017897137,0.000019741638,0.0013394644,0.000061987674],"about_ca_topic_score_codex":0.00068321533,"about_ca_topic_score_gemma":0.00092003035,"teacher_disagreement_score":0.009864315,"about_ca_system_score_codex":0.00003449964,"about_ca_system_score_gemma":0.00003444764,"threshold_uncertainty_score":0.29660243},"labels":[],"label_agreement":null},{"id":"W2109489147","doi":"10.1128/iai.00874-07","title":"A LysR-Type Transcriptional Regulator in <i>Burkholderia cenocepacia</i> Influences Colony Morphology and Virulence","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Microbiology; Biofilm; Burkholderia cenocepacia; Transposon mutagenesis; Mutant; Burkholderia; Homoserine; Gene; Bacteria; Transposable element; Genetics; Quorum sensing","score_opus":0.017388162791186802,"score_gpt":0.23558275749751242,"score_spread":0.21819459470632563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109489147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988001,0.00031003708,0.0000015078826,0.0002325944,0.00015323999,0.000104519284,0.000006861776,0.000045182278,0.00034596448],"genre_scores_gemma":[0.9993392,0.00015116272,0.000036406454,0.00037365718,0.00004426978,0.0000037347265,0.000011785233,7.417985e-7,0.000039024253],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992595,0.000097786186,0.00018380175,0.00017608739,0.0000849352,0.00019792224],"domain_scores_gemma":[0.999609,0.00018199223,0.000051510284,0.00003815792,0.000051849413,0.00006750462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004770775,0.00010230137,0.00012623373,0.000030520623,0.00020934115,0.000037488662,0.000060063387,0.0001275404,0.00014188427],"category_scores_gemma":[0.00010625484,0.00005141723,0.000025543368,0.00035380115,0.00016954576,0.00019517037,0.00003349318,0.0001732369,0.000007661947],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049478953,0.000050414706,0.23726907,0.000003889445,0.0000049702194,0.0000025521526,0.00012125051,1.3060381e-7,0.75760114,0.00017496747,0.000022706141,0.004699401],"study_design_scores_gemma":[0.0001869501,0.00020988722,0.9764143,0.000017900953,0.00000576418,0.00005053044,0.000089113804,0.0000037021712,0.020835144,0.00043713892,0.0016371404,0.00011243333],"about_ca_topic_score_codex":0.0037322687,"about_ca_topic_score_gemma":0.003487498,"teacher_disagreement_score":0.7391452,"about_ca_system_score_codex":0.000025289444,"about_ca_system_score_gemma":0.000008279882,"threshold_uncertainty_score":0.5642099},"labels":[],"label_agreement":null},{"id":"W2109875763","doi":"10.1128/iai.72.12.7183-7189.2004","title":"Synovial Fibroblasts Infected with <i>Salmonella enterica</i> Serovar Typhimurium Mediate Osteoclast Differentiation and Activation","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University Health Network; University of Toronto","funders":"National Institutes of Health","keywords":"Salmonella enterica; Biology; Salmonella; Serotype; Microbiology; Osteoclast; Enterobacteriaceae; Virology; Bacteria; Escherichia coli; In vitro; Genetics; Gene","score_opus":0.004650486666408285,"score_gpt":0.2016296057048506,"score_spread":0.19697911903844234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109875763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99714,0.00010512786,0.0022619297,0.00005162795,0.000083893625,0.000121946265,0.0000095946125,0.000028084662,0.00019777947],"genre_scores_gemma":[0.9991884,0.00033659386,0.000054665474,0.00010211289,0.00008920655,0.000010980638,0.00017951708,0.000011296667,0.000027185873],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99949723,0.000060121558,0.00010377259,0.00016450074,0.00006585103,0.000108540364],"domain_scores_gemma":[0.9996608,0.000008210775,0.00006839447,0.00013039664,0.00006435907,0.0000678497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004816575,0.00012235426,0.000097624885,0.000045716104,0.00014081801,0.000042691052,0.000024067018,0.00008252897,0.0000074195696],"category_scores_gemma":[0.000041300184,0.00010423447,0.000022675506,0.00008804987,0.00007332137,0.000020947535,0.00005594129,0.000078577985,0.0000023399098],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044557735,0.00021540115,0.060650088,0.000053221604,0.000058734848,5.842852e-7,0.00011155468,0.00007058041,0.9353582,0.00006208978,0.00005448204,0.0029194653],"study_design_scores_gemma":[0.0018115283,0.0004424307,0.7704798,0.00003005791,0.000037963076,0.00002123101,0.000025992425,0.000014667974,0.2256437,0.00008884963,0.0012300619,0.00017374197],"about_ca_topic_score_codex":0.00026799925,"about_ca_topic_score_gemma":0.000092310576,"teacher_disagreement_score":0.7098297,"about_ca_system_score_codex":0.000008355707,"about_ca_system_score_gemma":0.000030392246,"threshold_uncertainty_score":0.4250558},"labels":[],"label_agreement":null},{"id":"W2110107130","doi":"10.1128/iai.72.7.4314-4317.2004","title":"Identification of a Point Mutation Resulting in Loss of Cell Wall Anchoring Activity of SrtA of <i>Streptococcus mutans</i> NG5","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Dalhousie University","funders":"","keywords":"Streptococcus mutans; Point mutation; Biology; Mutation; Microbiology; Cell; Surface protein; Gene; Genetics; Bacteria; Virology","score_opus":0.0067593624647363845,"score_gpt":0.23482493656167483,"score_spread":0.22806557409693845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110107130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99892616,0.000028439488,0.00082619104,0.000011061622,0.000031842133,0.00010651762,0.000015947646,0.000002296146,0.00005154049],"genre_scores_gemma":[0.99979347,0.00008523468,0.00004853912,0.0000028078946,0.000009775463,0.000002860591,0.00005001006,0.0000033024983,0.000003973219],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994468,0.000044246575,0.00030985393,0.000093117385,0.000054331056,0.000051649793],"domain_scores_gemma":[0.99937576,0.000009052868,0.00033916454,0.00012058814,0.00014234518,0.000013075514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014693213,0.000057886344,0.000117148906,0.000045747387,0.00001682303,0.0000023073464,0.000034617715,0.00008669439,0.0000016041948],"category_scores_gemma":[0.00008986138,0.000057362442,0.000034408797,0.00013883956,0.000068586385,0.000013422594,0.00002811733,0.00006309979,5.0529792e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009315336,0.00007703599,0.016928466,0.00016271956,0.0000070919546,6.4318876e-8,0.00020871547,0.000087661516,0.981052,0.000011046483,1.978844e-7,0.0013718631],"study_design_scores_gemma":[0.00040980297,0.00009936803,0.2340153,0.000032531625,0.0000055716932,0.000001186775,0.000028914821,0.00003182562,0.76524526,0.000091280075,0.0000023175412,0.00003661712],"about_ca_topic_score_codex":0.00068064104,"about_ca_topic_score_gemma":0.000041029645,"teacher_disagreement_score":0.21708684,"about_ca_system_score_codex":0.000010201851,"about_ca_system_score_gemma":0.000020069698,"threshold_uncertainty_score":0.23391725},"labels":[],"label_agreement":null},{"id":"W2110131172","doi":"10.1128/iai.00822-08","title":"Regulatory T Cells Modulate Staphylococcal Enterotoxin B-Induced Effector T-Cell Activation and Acceleration of Colitis","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto; Mount Sinai Hospital","funders":"Crohn's and Colitis Foundation of Canada; Natural Sciences and Engineering Research Council of Canada; Crohn's and Colitis Foundation","keywords":"FOXP3; IL-2 receptor; Colitis; Superantigen; Biology; Inflammation; Immunology; T cell; Molecular biology; Immune system","score_opus":0.016830627444568945,"score_gpt":0.22364371308718692,"score_spread":0.20681308564261797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110131172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99714535,0.000101604695,0.00038361712,0.000019143237,0.0011391392,0.00034139518,0.0000034521206,0.000059877082,0.0008064424],"genre_scores_gemma":[0.9983062,0.0002825351,0.000010045671,0.000068697685,0.000020547583,0.000022748813,0.00007014096,0.000011880745,0.0012071631],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900925,0.0003392293,0.00029051484,0.00017814396,0.000036095367,0.00014677117],"domain_scores_gemma":[0.99940854,0.000085744,0.00018556275,0.00018210414,0.00011544104,0.000022612168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018891052,0.0001514133,0.00020791036,0.00017083329,0.00037515382,0.000014236285,0.00003622084,0.000213776,0.00031036878],"category_scores_gemma":[0.000033847064,0.00015116294,0.00005830301,0.000107137625,0.00013867235,0.0003372322,0.000044244734,0.0003195066,0.000044582157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027420884,0.00017137491,0.005302319,0.000041390304,0.000040012674,2.2117716e-7,0.00042537772,0.0000052058895,0.99095035,0.00003421055,0.00060555467,0.0021497898],"study_design_scores_gemma":[0.0010410439,0.0003339821,0.30516466,0.00002135265,0.000011172095,0.00002971215,0.000045733297,0.00003748205,0.6898193,0.0000068734907,0.003392476,0.00009620985],"about_ca_topic_score_codex":0.0010360217,"about_ca_topic_score_gemma":0.000014723627,"teacher_disagreement_score":0.30113104,"about_ca_system_score_codex":0.00004660734,"about_ca_system_score_gemma":0.000024421784,"threshold_uncertainty_score":0.61642456},"labels":[],"label_agreement":null},{"id":"W2110141337","doi":"10.1128/iai.01217-07","title":"Toll-Like Receptor 9-Dependent Macrophage Activation by <i>Entamoeba histolytica</i> DNA","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; McGill University","keywords":"Entamoeba histolytica; Biology; TLR9; Toll-Like Receptor 9; Molecular biology; Innate immune system; Transfection; Cell culture; Immune system; Microbiology; Gene expression; DNA methylation; Immunology; Gene; Biochemistry","score_opus":0.009158591218771005,"score_gpt":0.26237160192866327,"score_spread":0.25321301070989227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110141337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9760612,0.00009263334,0.0033177475,0.00015216356,0.0005332638,0.0003038282,0.000008389567,0.00012970748,0.019401032],"genre_scores_gemma":[0.9934172,0.00018286429,0.000099750876,0.0004843715,0.00007539861,0.000013476898,0.00010459147,0.000017831684,0.005604507],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918026,0.000048065693,0.00022792617,0.00017739377,0.00015447027,0.00021190483],"domain_scores_gemma":[0.99941194,0.000054517823,0.00008418037,0.00022284035,0.00008664783,0.00013987039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029666253,0.00015143186,0.00017463411,0.00012707888,0.00035965742,0.000024885536,0.000023177106,0.00012918437,0.0005514657],"category_scores_gemma":[0.000052325016,0.00013561329,0.00006624734,0.00018197193,0.000075632364,0.00017283531,0.000032434033,0.00028570002,0.00011699971],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011251376,0.0040865964,0.33453643,0.00015373534,0.0005561219,0.000036576916,0.0007435673,0.0000018807601,0.4636765,0.0005222947,0.030834632,0.16372651],"study_design_scores_gemma":[0.0060943426,0.0013004382,0.40556568,0.00010458803,0.00023327304,0.00044652174,0.0002922162,0.000040873394,0.2621137,0.00009446321,0.32327846,0.000435473],"about_ca_topic_score_codex":0.0015769766,"about_ca_topic_score_gemma":0.00005467389,"teacher_disagreement_score":0.2924438,"about_ca_system_score_codex":0.00032200437,"about_ca_system_score_gemma":0.00003084226,"threshold_uncertainty_score":0.60381633},"labels":[],"label_agreement":null},{"id":"W2110338827","doi":"10.1128/iai.01568-07","title":"<scp>d</scp> -Alanylation of Lipoteichoic Acid Contributes to the Virulence of <i>Streptococcus suis</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Beijing Municipal Education Commission; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Virulence; Streptococcus suis; Biology; Microbiology; Lipoteichoic acid; Virulence factor; Mutant; Pathogen; Immune system; Streptococcaceae; Serotype; Bacteriocin; Virology; Bacteria; Antimicrobial; Staphylococcus aureus; Immunology; Gene; Antibiotics; Genetics","score_opus":0.0222902524829196,"score_gpt":0.2736540123102401,"score_spread":0.2513637598273205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110338827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955193,0.00029380765,0.000752548,0.00008653767,0.00014259138,0.0005582147,0.000013165486,0.00003500728,0.0025988587],"genre_scores_gemma":[0.9991459,0.00032125146,0.000031234624,0.00008235021,0.000030399771,0.00005030488,0.000015023043,0.000006628083,0.0003169057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993434,0.00007146753,0.00025635,0.00010958915,0.00010412707,0.00011508983],"domain_scores_gemma":[0.99912935,0.00019811561,0.000120864875,0.0002662789,0.00022593379,0.00005944406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014703709,0.0001032641,0.00022025594,0.00012042709,0.00020691875,0.0000064933156,0.000034534227,0.000071191236,0.000024181327],"category_scores_gemma":[0.00048184852,0.00007215371,0.00008149293,0.00039935636,0.0001421618,0.00007432189,0.000038678892,0.00014479869,0.00001562794],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022213242,0.00029629117,0.9617922,0.000028609944,0.00010287378,9.4231643e-7,0.00027485855,0.00001685541,0.033996306,0.00010159292,0.0005794977,0.0027877658],"study_design_scores_gemma":[0.0008443627,0.0004297253,0.8443512,0.00005873156,0.00006415163,0.000031521195,0.000055479504,0.000025699279,0.14642076,0.000058673497,0.007637122,0.000022626784],"about_ca_topic_score_codex":0.0013161664,"about_ca_topic_score_gemma":0.000081853155,"teacher_disagreement_score":0.11744104,"about_ca_system_score_codex":0.000032168246,"about_ca_system_score_gemma":0.000041771284,"threshold_uncertainty_score":0.29423428},"labels":[],"label_agreement":null},{"id":"W2110476474","doi":"10.1128/iai.00071-13","title":"Na <sup>+</sup> /H <sup>+</sup> Antiport Is Essential for Yersinia pestis Virulence","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Yersinia pestis; Antiporter; Virulence; Biology; Antiporters; Enterobacteriaceae; Microbiology; Complementation; Mutant; Yersinia pseudotuberculosis; In vivo; Biochemistry; Gene; Escherichia coli; Membrane; Genetics","score_opus":0.01291910561066272,"score_gpt":0.28172057750685237,"score_spread":0.26880147189618964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110476474","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960122,0.0001740953,0.0019028501,0.00023525018,0.00012867959,0.00059917587,0.000073481446,0.000042756667,0.0008314837],"genre_scores_gemma":[0.9970786,0.0005229301,0.00034044683,0.0003334627,0.00023056717,0.000084539344,0.00029604015,0.000035148874,0.0010782586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840134,0.00017858039,0.00030580096,0.00045233007,0.00018895468,0.000472987],"domain_scores_gemma":[0.99878144,0.00006406119,0.000097284086,0.0005253981,0.00034268407,0.00018915458],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000364475,0.00026492777,0.00024771615,0.00013145249,0.0004427435,0.00016750488,0.00020583833,0.00030434414,0.0005108227],"category_scores_gemma":[0.00025448215,0.0002720669,0.00014935866,0.00019109742,0.00024536674,0.000052746047,0.00020529312,0.0003147322,0.000140226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039709135,0.00046807868,0.14653035,0.00022827319,0.00027088364,0.0000041579674,0.000849799,0.00034507454,0.8164818,0.00002477317,0.01649404,0.01790565],"study_design_scores_gemma":[0.0037692636,0.002257453,0.31200644,0.000106587104,0.00012737353,0.00031307148,0.0005051732,0.024280915,0.5384192,0.0001675863,0.11676167,0.0012852852],"about_ca_topic_score_codex":0.0018225377,"about_ca_topic_score_gemma":0.000027022961,"teacher_disagreement_score":0.27806264,"about_ca_system_score_codex":0.000037685506,"about_ca_system_score_gemma":0.000121678,"threshold_uncertainty_score":0.9999732},"labels":[],"label_agreement":null},{"id":"W2110504024","doi":"10.1128/iai.01281-10","title":"Involvement of Quorum Sensing and Heat-Stable Enterotoxin a in Cell Damage Caused by a Porcine Enterotoxigenic <i>Escherichia coli</i> Strain","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; China Scholarship Council; Ministry of Education, India; University of Guelph; North Carolina State University","keywords":"Enterotoxigenic Escherichia coli; Enterotoxin; Heat-stable enterotoxin; Biology; Quorum sensing; Microbiology; Strain (injury); Escherichia coli; Heat-labile enterotoxin; Bacteria; Genetics; Gene; Biofilm","score_opus":0.019100726649735323,"score_gpt":0.2486758797325477,"score_spread":0.22957515308281237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110504024","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978265,0.00066054106,0.0002539921,0.000024098941,0.00003254534,0.0003999322,0.000024542825,0.000008152741,0.00076969794],"genre_scores_gemma":[0.99842066,0.0010947185,0.0001320551,0.00013305116,0.000009664236,0.000023265196,0.000029936125,0.000011596956,0.0001450396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991158,0.00019904265,0.00020930523,0.00018615264,0.000077088116,0.00021260888],"domain_scores_gemma":[0.99962354,0.000011110005,0.00005601435,0.00018734888,0.000058147343,0.00006386268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029409298,0.00013487594,0.00017042138,0.000058273312,0.00008995901,0.000014620208,0.000048099555,0.00007873701,0.000013520447],"category_scores_gemma":[0.000038636754,0.00013400211,0.00003115819,0.000114599934,0.00012805017,0.000010452441,0.0001910731,0.00016494485,4.155212e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008561933,0.00021017558,0.07429001,0.000074112075,0.000033233548,0.0000010972667,0.0005683325,7.251331e-7,0.9243757,0.0000024066956,0.00012811134,0.000230481],"study_design_scores_gemma":[0.0017000432,0.0009015496,0.1691912,0.000043189848,0.000012923904,0.0000021443636,0.000731825,0.00016097004,0.8249615,0.000020657375,0.0021008917,0.00017310091],"about_ca_topic_score_codex":0.0044799917,"about_ca_topic_score_gemma":0.0020102304,"teacher_disagreement_score":0.099414185,"about_ca_system_score_codex":0.000018527624,"about_ca_system_score_gemma":0.000032334003,"threshold_uncertainty_score":0.6772437},"labels":[],"label_agreement":null},{"id":"W2110558489","doi":"10.1128/iai.00159-06","title":"Cardiac Failure in C5-Deficient A/J Mice after<i>Candida albicans</i>Infection","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"","keywords":"Biology; Candida albicans; Endocrinology; Creatine kinase; Myocarditis; Internal medicine; Immunology; Microbiology; Medicine","score_opus":0.006305051246829007,"score_gpt":0.24114698543382693,"score_spread":0.23484193418699792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110558489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930022,0.0003571705,0.0001750649,0.00015217425,0.00021815172,0.00026792116,0.000008912818,0.0000681054,0.0057503073],"genre_scores_gemma":[0.99870807,0.00026759293,0.000027643839,0.00012330501,0.00008827989,0.000028321418,0.000037532045,0.000010359072,0.0007088858],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99908185,0.0001254552,0.00024015205,0.00020836835,0.00014080694,0.00020336645],"domain_scores_gemma":[0.99953556,0.000040453215,0.000049857805,0.00022450103,0.00008859791,0.000061050545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033682404,0.00013607061,0.00024185744,0.00013555126,0.00013321887,0.00003055674,0.000018355819,0.000120781806,0.00016190867],"category_scores_gemma":[0.00005613773,0.00012458155,0.000092883565,0.000303519,0.000098002565,0.00013025913,0.0000259456,0.00034689717,0.000028333607],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019361793,0.00024932413,0.98274696,0.00007811585,0.000012113357,0.000005001711,0.00009961106,0.000007510873,0.01380449,0.000078730605,0.00044636935,0.0022781505],"study_design_scores_gemma":[0.00060524093,0.00014277072,0.97417384,0.00005863384,0.000035561185,0.000013044185,0.000070148046,0.00003049043,0.0011429723,0.0000892665,0.023521053,0.00011700357],"about_ca_topic_score_codex":0.027324216,"about_ca_topic_score_gemma":0.010644494,"teacher_disagreement_score":0.023074683,"about_ca_system_score_codex":0.00014916377,"about_ca_system_score_gemma":0.000049889775,"threshold_uncertainty_score":0.9791529},"labels":[],"label_agreement":null},{"id":"W2110736523","doi":"10.1128/iai.71.2.676-681.2003","title":"Roles of Sortase in Surface Expression of the Major Protein Adhesin P1, Saliva-Induced Aggregation and Adherence, and Cariogenicity of <i>Streptococcus mutans</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sortase; Mutant; Sortase A; Streptococcus mutans; Peptidoglycan; Biology; Bacterial adhesin; Wild type; Complementation; Microbiology; Peptide sequence; Glucosyltransferase; Molecular biology; Biochemistry; Gene; Escherichia coli; Bacteria; Genetics","score_opus":0.008287853201400328,"score_gpt":0.2210290740800595,"score_spread":0.21274122087865918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110736523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994969,0.00020251976,0.000015603138,0.000006609376,0.0000168288,0.00020237797,0.000015819782,0.0000016727213,0.000041713305],"genre_scores_gemma":[0.99984175,0.00008116895,0.000035075787,0.0000057959173,0.0000036848744,0.000004037834,0.000016304732,0.0000028619818,0.000009324731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995109,0.000121325014,0.00017571979,0.00009601788,0.000045784247,0.000050275532],"domain_scores_gemma":[0.99966615,0.0000075951634,0.00014266351,0.000107389074,0.00005791898,0.00001827509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009919854,0.00006762453,0.00010340942,0.000016057053,0.000035497735,0.0000040220243,0.000026035998,0.00010545691,0.0000035198966],"category_scores_gemma":[0.00009172678,0.00005000832,0.000020272937,0.00008835596,0.000089737325,0.000007996708,0.00003735003,0.00006520275,1.41124e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043461943,0.00002509736,0.09585538,0.000054296284,0.0000048186157,2.353064e-8,0.00006727192,9.550115e-7,0.90300894,0.000018845345,9.5302937e-7,0.0009199806],"study_design_scores_gemma":[0.0003237496,0.00009761423,0.16899897,0.00005188093,0.000006239197,0.000002129892,0.000034805307,0.0000066582543,0.830343,0.00007386974,0.000017765145,0.00004330737],"about_ca_topic_score_codex":0.00037246174,"about_ca_topic_score_gemma":0.00013724394,"teacher_disagreement_score":0.073143594,"about_ca_system_score_codex":0.000002987635,"about_ca_system_score_gemma":0.000019117542,"threshold_uncertainty_score":0.20392801},"labels":[],"label_agreement":null},{"id":"W2110853827","doi":"10.1128/iai.69.5.3438-3441.2001","title":"Heat-Inducible Surface Stress Protein (Hsp70) Mediates Sulfatide Recognition of the Respiratory Pathogen<i>Haemophilus influenzae</i>","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Haemophilus influenzae; Microbiology; Biology; Pathogen; Hsp70; Heat shock protein; Haemophilus; Virology; Immunology; Bacteria; Biochemistry; Antibiotics; Genetics; Gene","score_opus":0.03216329640857564,"score_gpt":0.28643951160655984,"score_spread":0.2542762151979842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110853827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977856,0.00044866247,0.00004876273,0.00011727688,0.000085717926,0.000548736,0.000042917283,0.000021493019,0.0009008355],"genre_scores_gemma":[0.9991326,0.00043976505,0.000039710758,0.00012321402,0.00007396094,0.000040591767,0.000032468295,0.000020551446,0.00009718914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867094,0.00049866503,0.0002481533,0.00020643644,0.00017024331,0.00020556184],"domain_scores_gemma":[0.9991729,0.000022636836,0.000049691604,0.00045479025,0.00022709595,0.000072882525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006198844,0.0001287274,0.00012819513,0.00004661655,0.0002475113,0.000025806004,0.00013030197,0.00017680477,0.000038540693],"category_scores_gemma":[0.00045649725,0.0001040394,0.000063431515,0.00024925193,0.00015612248,0.000015307214,0.000193412,0.0002735386,0.000009452131],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065900516,0.00009517442,0.04211948,0.00004031387,0.00002135166,9.5174533e-7,0.000036635727,0.000038590006,0.9536267,0.0000035120554,0.00007803951,0.0038733538],"study_design_scores_gemma":[0.0004883094,0.00030322888,0.035572566,0.000060979102,0.0000072554217,0.000019501234,0.000046935875,0.000018044222,0.9536124,0.000096136835,0.00964477,0.00012989665],"about_ca_topic_score_codex":0.0012655844,"about_ca_topic_score_gemma":0.00041967965,"teacher_disagreement_score":0.00956673,"about_ca_system_score_codex":0.000023220531,"about_ca_system_score_gemma":0.00011847242,"threshold_uncertainty_score":0.42426038},"labels":[],"label_agreement":null},{"id":"W2110965354","doi":"10.1128/iai.02685-14","title":"Divergent Targets of Aspergillus fumigatus AcuK and AcuM Transcription Factors during Growth <i>In Vitro</i> versus Invasive Disease","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Aspergillus fumigatus; Virulence; Mutant; In vitro; Gene; Transcription factor; In vivo; Gene expression; Microbiology; Cell biology; Genetics","score_opus":0.012422402022143003,"score_gpt":0.23680631462197338,"score_spread":0.22438391259983037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110965354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896365,0.0004695334,0.000061155646,0.000030529372,0.0001547462,0.00009953228,0.000021949616,0.000005248073,0.00019362645],"genre_scores_gemma":[0.997839,0.0019768227,0.000014313309,0.000012480967,0.000032754906,0.000006564354,0.000070655224,0.0000074015243,0.000040029143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993855,0.00011520586,0.0001168423,0.00015714651,0.0000844727,0.00014086073],"domain_scores_gemma":[0.9996702,0.000016955257,0.000032304422,0.00011152126,0.000060636583,0.00010836267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000099933,0.00010081408,0.0001013954,0.0000606666,0.00010400208,0.000013085668,0.00004412224,0.00007061087,0.000009115605],"category_scores_gemma":[0.00013080507,0.000092072696,0.000043424887,0.00006658494,0.00008852983,0.000008149087,0.00008434648,0.000107848,8.4591034e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069026806,0.000065584965,0.048828132,0.0000764442,0.00002237343,4.159418e-7,0.00009902115,0.000010201745,0.94967103,0.00002016786,0.000005318816,0.0005110196],"study_design_scores_gemma":[0.00083657546,0.0001763398,0.37880337,0.000008468495,0.0000090856065,8.4388506e-7,0.000034378365,0.000023681961,0.61975765,0.00003317481,0.00024071333,0.00007569373],"about_ca_topic_score_codex":0.00038405493,"about_ca_topic_score_gemma":0.00009559707,"teacher_disagreement_score":0.32997525,"about_ca_system_score_codex":0.000011369689,"about_ca_system_score_gemma":0.000021121381,"threshold_uncertainty_score":0.37546158},"labels":[],"label_agreement":null},{"id":"W2110995507","doi":"10.1128/iai.68.9.4913-4922.2000","title":"Extract of<i>Nippostrongylus brasiliensis</i>Stimulates Polyclonal Type-2 Immunoglobulin Response by Inducing De Novo Class Switch","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helminth infection and control","field":"Veterinary","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Nippostrongylus brasiliensis; Biology; Polyclonal antibodies; Immunoglobulin class switching; Immunoglobulin E; Antibody; Immune system; Interleukin 4; In vitro; Lipopolysaccharide; Immunoglobulin G; Immunology; Molecular biology; B cell; Biochemistry","score_opus":0.023595037440135785,"score_gpt":0.30822203359592065,"score_spread":0.28462699615578485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110995507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953527,0.000310022,0.00017961691,0.00018487038,0.00025055942,0.00016920119,0.00002464125,0.00013733703,0.0033910882],"genre_scores_gemma":[0.99841434,0.00013645364,0.000053105938,0.0003570361,0.000046260335,0.00000947654,0.000018124929,0.000023675644,0.00094152347],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983301,0.0006056672,0.00040229113,0.00021444552,0.00013985654,0.00030760598],"domain_scores_gemma":[0.9990171,0.00031770443,0.00011290683,0.0003200207,0.00011277466,0.00011948186],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007770426,0.00020718873,0.00026654193,0.00012671447,0.00031522955,0.000058404352,0.00008838227,0.00021517267,0.002673702],"category_scores_gemma":[0.00024076777,0.00021084672,0.000104133476,0.0002835038,0.00011746788,0.0002492124,0.0000397938,0.0005013841,0.00015538272],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008273733,0.000515893,0.06479119,0.000028701446,0.00014057731,0.000020524247,0.0006393378,0.00010745193,0.8219826,0.000024790697,0.00081411214,0.10266105],"study_design_scores_gemma":[0.0032725746,0.002524828,0.8540218,0.00010223996,0.00007901876,0.0015646002,0.00017192643,0.0021750696,0.03592973,0.00007993768,0.09952655,0.00055175496],"about_ca_topic_score_codex":0.0028293424,"about_ca_topic_score_gemma":0.00003157481,"teacher_disagreement_score":0.7892306,"about_ca_system_score_codex":0.00010455541,"about_ca_system_score_gemma":0.00010857115,"threshold_uncertainty_score":0.99823797},"labels":[],"label_agreement":null},{"id":"W2111243579","doi":"10.1128/iai.69.12.7793-7799.2001","title":"Dynamic Changes in Neutrophil Defensins during Endotoxemia","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; British Columbia Lung Association","keywords":"Biology; Immunology; Neutrophile; Defensin; Microbiology; Inflammation; Antimicrobial","score_opus":0.009467182456883,"score_gpt":0.22441604767427123,"score_spread":0.21494886521738824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111243579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724,0.0003537434,0.000012325046,0.00018077991,0.0002886638,0.00009019252,0.000003659519,0.00006489904,0.0017657019],"genre_scores_gemma":[0.9963691,0.0020542778,0.0000073382603,0.000098258824,0.000011476514,0.0000056638137,0.00001974165,0.000008442024,0.0014256717],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994561,0.00009903325,0.000109132256,0.00012225265,0.000010106347,0.00020335807],"domain_scores_gemma":[0.99977994,0.000031177606,0.000044140525,0.00011571886,0.00001815796,0.000010847908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007985221,0.000107594096,0.00014598788,0.0001371685,0.00024468708,0.000017101094,0.000037298298,0.00012248306,0.00022168599],"category_scores_gemma":[0.00001896499,0.00010412861,0.00003180454,0.000113270784,0.00012728081,0.00010960534,0.00006034277,0.00031072885,0.000057413865],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009332533,0.000090964924,0.057613138,0.000016694024,0.000024595018,0.0000067650235,0.0003076264,0.00000969667,0.93720734,0.000109694796,0.000051225346,0.0044689407],"study_design_scores_gemma":[0.0013215003,0.00012402365,0.889889,0.00005582092,0.00001313107,0.00056260155,0.0002748394,0.000010992489,0.095810235,0.00014001608,0.011579579,0.00021826886],"about_ca_topic_score_codex":0.0023919926,"about_ca_topic_score_gemma":0.0034221606,"teacher_disagreement_score":0.8413971,"about_ca_system_score_codex":0.000040155413,"about_ca_system_score_gemma":0.000009115671,"threshold_uncertainty_score":0.42462415},"labels":[],"label_agreement":null},{"id":"W2111275708","doi":"10.1128/iai.73.2.1171-1179.2005","title":"<i>Fusobacterium nucleatum</i> Increases Collagenase 3 Production and Migration of Epithelial Cells","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of British Columbia","funders":"Canadian Institutes of Health Research; Academy of Finland","keywords":"Fusobacterium nucleatum; Biology; Microbiology; Cell culture; Cell; Cell biology; Immunology; Molecular biology; Porphyromonas gingivalis; Biochemistry","score_opus":0.012718023742097026,"score_gpt":0.2569994738594266,"score_spread":0.2442814501173296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111275708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983834,0.00006667645,0.00002104642,0.00022543417,0.00013804757,0.0002961505,0.000012137848,0.000045416695,0.0008116688],"genre_scores_gemma":[0.99870807,0.0006328302,0.00011488375,0.00006890398,0.00011131069,0.000015997188,0.000017533164,0.0000073245574,0.00032312062],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995429,0.00005382789,0.000155458,0.00011668129,0.000056259712,0.00007489296],"domain_scores_gemma":[0.9996223,0.000022600118,0.000067754845,0.00012633966,0.00009893633,0.0000621073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009163359,0.0000893434,0.00013927837,0.000090838694,0.00013853957,0.000015429398,0.000007853499,0.000056139022,0.000082795654],"category_scores_gemma":[0.00006931007,0.00007652577,0.000035814734,0.0001269027,0.00008197573,0.00015381843,0.000017249064,0.000082676896,0.0000093277795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002629198,0.0013132804,0.30809847,0.00010005191,0.00010584508,0.0000013620441,0.00031713926,0.0000063581756,0.66382205,0.00004814497,0.00083643064,0.02508795],"study_design_scores_gemma":[0.00091688574,0.00050036336,0.64912456,0.000050497758,0.000115475224,0.00011162298,0.000053860855,0.000073611875,0.33687112,0.000020906999,0.012082148,0.00007893866],"about_ca_topic_score_codex":0.0033461356,"about_ca_topic_score_gemma":0.00059629104,"teacher_disagreement_score":0.3410261,"about_ca_system_score_codex":0.000042724914,"about_ca_system_score_gemma":0.000022190827,"threshold_uncertainty_score":0.50583786},"labels":[],"label_agreement":null},{"id":"W2111282720","doi":"10.1128/iai.05118-11","title":"Fusobacterium nucleatum Infection of Colonic Cells Stimulates MUC2 Mucin and Tumor Necrosis Factor Alpha","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Guelph; University of Calgary","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; University of Calgary","keywords":"Fusobacterium nucleatum; Mucin 2; Mucin; Biology; Microbiology; Tumor necrosis factor alpha; Inflammatory bowel disease; Pathogenesis; Pathogen; Secretion; Immunology; Pathology; Disease; Gene expression; Bacteria; Gene; Medicine; Porphyromonas gingivalis","score_opus":0.038312614608492376,"score_gpt":0.2768431336886978,"score_spread":0.2385305190802054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111282720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781007,0.000064627784,0.000011370187,0.000031963653,0.00024319642,0.00038260696,0.000024681593,0.00007201534,0.0013594572],"genre_scores_gemma":[0.99852556,0.0010844474,0.000078163284,0.00010130951,0.00003513792,0.000026993168,0.000009951863,0.000017075708,0.00012138361],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99912894,0.00011003775,0.00024194646,0.00017709253,0.00011757373,0.00022443767],"domain_scores_gemma":[0.9991914,0.00011569549,0.00010427847,0.00021619012,0.00016910418,0.00020334688],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017449229,0.00015457721,0.0002903657,0.00018848365,0.00014620123,0.00003312963,0.000029920799,0.00010215624,0.0009164588],"category_scores_gemma":[0.00023396235,0.0001363001,0.00007214514,0.00018715192,0.0001560626,0.00022818358,0.00008503906,0.00028033752,0.000022195603],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038299747,0.00048364841,0.74730664,0.0002773987,0.00007769248,0.0000042853726,0.00088868657,1.2965138e-7,0.24686214,0.00002637276,0.0002963094,0.0033937043],"study_design_scores_gemma":[0.0010418659,0.0012958222,0.85457784,0.0000729856,0.000054689808,0.000034556422,0.000022213513,0.000053623327,0.14091416,0.000059977752,0.0017653587,0.0001069121],"about_ca_topic_score_codex":0.018345674,"about_ca_topic_score_gemma":0.00026457364,"teacher_disagreement_score":0.10727121,"about_ca_system_score_codex":0.00007194346,"about_ca_system_score_gemma":0.0000812477,"threshold_uncertainty_score":0.99999684},"labels":[],"label_agreement":null},{"id":"W2111398511","doi":"10.1128/iai.01581-07","title":"Shiga Toxin 2 Causes Apoptosis in Human Brain Microvascular Endothelial Cells via C/EBP Homologous Protein","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Apoptosis; Biology; DNA fragmentation; Shiga toxin; CHOP; Molecular biology; Shiga-like toxin; Gene knockdown; Fragmentation (computing); Downregulation and upregulation; Cell biology; Programmed cell death; Escherichia coli; Biochemistry; Gene","score_opus":0.009591199188489628,"score_gpt":0.22507626255502014,"score_spread":0.2154850633665305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111398511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772716,0.00023329254,0.001396316,0.000028983417,0.00013968592,0.0002621585,0.0000044173903,0.000018365257,0.00018961092],"genre_scores_gemma":[0.99854195,0.00038979392,0.00011159688,0.0000930952,0.00009970718,0.000027947599,0.000062280305,0.000014022658,0.00065957766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992732,0.00014692252,0.00016766957,0.00019479671,0.000062620915,0.00015482197],"domain_scores_gemma":[0.9996512,0.000005923057,0.000053921263,0.00021319032,0.00003442661,0.000041319112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018682748,0.00012621733,0.00012275366,0.00007698273,0.00024716117,0.000015242799,0.000051333802,0.0001774374,0.000029853778],"category_scores_gemma":[0.000019884807,0.00012365302,0.00007231221,0.00008222926,0.000085279724,0.000007391842,0.000063829975,0.00013489551,0.0000045430647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021389124,0.00011124897,0.0009399653,0.000013340176,0.000020764806,0.0000020177524,0.0000764803,0.000025828609,0.9965843,0.000026520149,0.000085008076,0.0020931622],"study_design_scores_gemma":[0.000691105,0.00032104924,0.014140005,0.000010180042,0.000007338826,0.000037448797,0.000011930962,0.000018427212,0.9741624,0.000104476654,0.010341745,0.00015389368],"about_ca_topic_score_codex":0.0018872162,"about_ca_topic_score_gemma":0.00031206437,"teacher_disagreement_score":0.022421876,"about_ca_system_score_codex":0.000017807854,"about_ca_system_score_gemma":0.000021196314,"threshold_uncertainty_score":0.5042424},"labels":[],"label_agreement":null},{"id":"W2111418333","doi":"10.1128/iai.72.3.1223-1229.2004","title":"Role of MyD88 in Diminished Tumor Necrosis Factor Alpha Production by Newborn Mononuclear Cells in Response to Lipopolysaccharide","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; IWK Health Centre; Sick Kids Foundation","keywords":"Tumor necrosis factor alpha; CD14; Peripheral blood mononuclear cell; Lipopolysaccharide; Biology; Secretion; Internal medicine; Endocrinology; Cytokine; Immunology; Immune system; In vitro; Medicine; Biochemistry","score_opus":0.006552624152650698,"score_gpt":0.2238944004802545,"score_spread":0.2173417763276038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111418333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99867076,0.00020704682,0.00003161708,0.00028803537,0.0002981468,0.0003694462,0.000009249124,0.000039245504,0.00008644264],"genre_scores_gemma":[0.9994463,0.00012435121,0.000042343796,0.00006540017,0.000007809354,0.000027921753,0.000015545422,0.000013453887,0.00025692387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986419,0.00046982884,0.0004189762,0.00020689095,0.000034618395,0.00022774824],"domain_scores_gemma":[0.9994742,0.00007745366,0.00012579926,0.00024461094,0.00005592833,0.000021997106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057188707,0.0001503755,0.00025154336,0.00039690672,0.000113202914,0.000017259506,0.00008114591,0.00016036203,0.00008741307],"category_scores_gemma":[0.0003270337,0.00015454262,0.00004694839,0.00030260676,0.0000835353,0.00028406802,0.00006334468,0.00033308394,0.000085979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025751102,0.00025549403,0.003086435,0.000011395716,0.000016520913,5.24618e-7,0.0036879512,0.00007313884,0.98217237,0.000017519358,0.000058235593,0.008045294],"study_design_scores_gemma":[0.0011019418,0.00034662316,0.19205932,0.000054401753,0.000005705414,0.000011352084,0.00035756957,0.0000021006254,0.7989658,0.00008426177,0.006887161,0.00012374208],"about_ca_topic_score_codex":0.00965398,"about_ca_topic_score_gemma":0.00046396654,"teacher_disagreement_score":0.18897289,"about_ca_system_score_codex":0.00016566478,"about_ca_system_score_gemma":0.000097136384,"threshold_uncertainty_score":0.9969408},"labels":[],"label_agreement":null},{"id":"W2111602293","doi":"10.1128/iai.73.7.4327-4337.2005","title":"SepZ/EspZ Is Secreted and Translocated into HeLa Cells by the Enteropathogenic <i>Escherichia coli</i> Type III Secretion System","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Canada","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Naito Foundation","keywords":"Biology; Intimin; Enteropathogenic Escherichia coli; Secretion; Effector; Virulence; Type three secretion system; Microbiology; Pathogenicity island; Escherichia coli; Enterocyte; Enterobacteriaceae; Cell biology; Gene; Genetics; Biochemistry","score_opus":0.007210063444295218,"score_gpt":0.24067493552748442,"score_spread":0.2334648720831892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111602293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99521613,0.0028031985,0.000731606,0.00025260568,0.00010966299,0.00027457508,0.000012793783,0.00003424897,0.00056518574],"genre_scores_gemma":[0.995779,0.003153211,0.000041065177,0.00044413182,0.00007218929,0.000029270426,0.000051955583,0.00001512919,0.0004140479],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904734,0.0002903622,0.00016800882,0.00021082447,0.000100236706,0.00018325113],"domain_scores_gemma":[0.9994982,0.00001911162,0.000058288693,0.00022329156,0.0001286328,0.0000725057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034336722,0.00015486694,0.00013451772,0.000026202615,0.00041109283,0.00005456237,0.000079143465,0.00013194897,0.000014505513],"category_scores_gemma":[0.00002674846,0.00012270993,0.000044066426,0.00016660574,0.0001574407,0.0000117394775,0.00010236749,0.00022318077,0.000006635775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012116303,0.00003771103,0.0011130183,0.000053474098,0.00008135935,2.0253894e-7,0.00047052684,0.000003826686,0.9947151,0.000008236963,0.0014007787,0.001994633],"study_design_scores_gemma":[0.002144733,0.0011757218,0.010982108,0.00006181235,0.0000980635,0.00003586943,0.0009568079,0.0033320347,0.7526507,0.000010448435,0.22808614,0.00046558987],"about_ca_topic_score_codex":0.0006600998,"about_ca_topic_score_gemma":0.00022964162,"teacher_disagreement_score":0.2420644,"about_ca_system_score_codex":0.00003108547,"about_ca_system_score_gemma":0.000034409248,"threshold_uncertainty_score":0.50039655},"labels":[],"label_agreement":null},{"id":"W2111698215","doi":"10.1128/iai.00856-09","title":"<i>Rhodococcus equi</i>Virulence-Associated Protein A Is Required for Diversion of Phagosome Biogenesis but Not for Cytotoxicity","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Virulence; Biology; Rhodococcus equi; Phagosome; Cytotoxicity; Microbiology; Biogenesis; Phagocytosis; Biochemistry; Gene","score_opus":0.03711406919320507,"score_gpt":0.3038787463108166,"score_spread":0.26676467711761154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111698215","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99647343,0.00008463738,0.0006365876,0.0001376144,0.000086953325,0.001909824,0.00027232614,0.00007800816,0.000320645],"genre_scores_gemma":[0.99891275,0.00010010278,0.00007862535,0.00034626698,0.000035173114,0.00012388223,0.00011473738,0.000011757945,0.00027673095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991284,0.000046907084,0.0002925884,0.00019872308,0.00012984857,0.00020354614],"domain_scores_gemma":[0.9990571,0.00005539906,0.00023593387,0.00020007482,0.00034536776,0.00010613852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025413086,0.00016024789,0.00032767787,0.00012911153,0.0003328356,0.000016909175,0.000023328905,0.000130906,0.00003308994],"category_scores_gemma":[0.00025563626,0.00013887494,0.00023473336,0.00015893372,0.00005961413,0.00012906732,0.000019910949,0.0000668811,0.0000019060952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003022319,0.0033940847,0.061517805,0.00048805616,0.00065563404,0.000018263781,0.00035625952,0.0000023361251,0.9092423,0.0002130552,0.00043115797,0.020658746],"study_design_scores_gemma":[0.006809137,0.003903298,0.29193467,0.00022625693,0.0005427489,0.000042732656,0.000037187223,0.00021323083,0.69467545,0.00072948204,0.00066621235,0.00021963743],"about_ca_topic_score_codex":0.00094130513,"about_ca_topic_score_gemma":0.00001030409,"teacher_disagreement_score":0.23041685,"about_ca_system_score_codex":0.00013008653,"about_ca_system_score_gemma":0.00008185426,"threshold_uncertainty_score":0.5663156},"labels":[],"label_agreement":null},{"id":"W2111913844","doi":"10.1128/iai.68.2.925-930.2000","title":"Identification of the Operon for the Sorbitol (Glucitol) Phosphoenolpyruvate:Sugar Phosphotransferase System in <i>Streptococcus mutans</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Dental and Craniofacial Research; Medical Research Council; National Institutes of Health; Medical Research Council Canada","keywords":"PEP group translocation; Biology; Operon; Sorbitol; Transposon mutagenesis; Gene; Phosphotransferase; Permease; Open reading frame; Genetics; Phosphoenolpyruvate carboxykinase; Microbiology; Transposable element; Biochemistry; Escherichia coli; Mutant","score_opus":0.005564318066972615,"score_gpt":0.21679401728695047,"score_spread":0.21122969921997786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111913844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982703,0.00043376844,0.00021003332,0.00012628129,0.00027525894,0.00054236804,0.000032876913,0.0000100280195,0.000099089375],"genre_scores_gemma":[0.9987174,0.0009675761,0.000006425703,0.00005079253,0.00003966427,0.000079091784,0.000016445001,0.00000869656,0.00011385157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993766,0.000060520986,0.00024896764,0.00015166937,0.000046060177,0.00011619269],"domain_scores_gemma":[0.99949044,0.000013776235,0.00006253121,0.000356165,0.00006188615,0.000015180324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022636582,0.000095302916,0.000099254015,0.000018225735,0.00016962331,0.0000218379,0.00014626453,0.0001697365,0.0000151479635],"category_scores_gemma":[0.000024874671,0.00006202727,0.000060530314,0.00013909375,0.00012771171,0.0000037486466,0.00003435109,0.00010891205,0.0000013864303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010506863,0.000054287615,0.0020522792,0.000031543128,0.000020992871,6.0530176e-8,0.00006599981,0.000058615526,0.98055166,0.000060511677,0.000048158163,0.016950814],"study_design_scores_gemma":[0.0005184885,0.00012895353,0.03703998,0.000018368119,0.00001992505,0.0000068818754,0.00007570811,0.00021928575,0.9467331,0.00001821448,0.015143601,0.00007746771],"about_ca_topic_score_codex":0.0007544531,"about_ca_topic_score_gemma":0.0003675884,"teacher_disagreement_score":0.0349877,"about_ca_system_score_codex":0.000013108569,"about_ca_system_score_gemma":0.000029394958,"threshold_uncertainty_score":0.25293985},"labels":[],"label_agreement":null},{"id":"W2112060135","doi":"10.1128/iai.72.1.559-569.2004","title":"Development, Characterization, and Functional Activity of a Panel of Specific Monoclonal Antibodies to Inner Core Lipopolysaccharide Epitopes in<i>Neisseria meningitidis</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Medical Research Council","keywords":"Neisseria meningitidis; Monoclonal antibody; Epitope; Biology; Lipopolysaccharide; Microbiology; Neisseriaceae; Virology; Epitope mapping; Antibody; Immunology; Bacteria; Antibiotics","score_opus":0.04466217521099183,"score_gpt":0.2541083486597322,"score_spread":0.20944617344874036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112060135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998615,0.00011742039,0.0004702544,0.000020295616,0.0004973561,0.00013862422,0.000018641844,0.000017883678,0.00010449795],"genre_scores_gemma":[0.999357,0.00031614525,0.000097368655,0.000012007978,0.000012099176,0.000013874247,0.000047747446,0.0000070084593,0.00013675817],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999309,0.000114446775,0.00028881413,0.00014817223,0.000013295534,0.00012628653],"domain_scores_gemma":[0.9995734,0.00005420866,0.00013707555,0.0001063973,0.000109461296,0.00001942043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022764826,0.00012569441,0.00024886036,0.00021081459,0.0001718063,0.000012393602,0.000025673611,0.00011124845,0.00022943055],"category_scores_gemma":[0.00006736865,0.00011847192,0.000026328276,0.00017923834,0.000088914574,0.00017715537,0.000046272293,0.0001406735,0.000005329162],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011412101,0.00014044919,0.1804866,0.00002244656,0.00004066416,5.1851693e-8,0.00037597655,0.0000011098365,0.81380826,0.000795912,0.000016422913,0.0041979947],"study_design_scores_gemma":[0.0003670821,0.000055474862,0.58905894,0.000024471223,0.0000057926777,0.00002300675,0.00004837947,5.3250193e-7,0.40139723,0.000023051904,0.008921322,0.00007472125],"about_ca_topic_score_codex":0.00043995414,"about_ca_topic_score_gemma":0.00015558122,"teacher_disagreement_score":0.41241103,"about_ca_system_score_codex":0.000016220125,"about_ca_system_score_gemma":0.000040526244,"threshold_uncertainty_score":0.48311448},"labels":[],"label_agreement":null},{"id":"W2112364955","doi":"10.1128/iai.73.8.5183-5188.2005","title":"Probiotics Reduce Enterohemorrhagic <i>Escherichia coli</i> O157:H7- and Enteropathogenic <i>E. coli</i> O127:H6-Induced Changes in Polarized T84 Epithelial Cell Monolayers by Reducing Bacterial Adhesion and Cytoskeletal Rearrangements","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":243,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada); SickKids Foundation; Université Laval; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Escherichia coli; Biology; Microbiology; Bacteria; Enterobacteriaceae; Enteropathogenic Escherichia coli; Pathogen; Biochemistry; Genetics; Gene","score_opus":0.011515304925280953,"score_gpt":0.25075187662344156,"score_spread":0.2392365716981606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112364955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978008,0.0008632728,0.000026635873,0.00023164866,0.00020537233,0.00057851104,0.000044424884,0.000024776276,0.0002245178],"genre_scores_gemma":[0.99337,0.0056309667,0.00030033928,0.00021802512,0.00018167682,0.000050037015,0.00007912831,0.000029505,0.00014030482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984071,0.00036632552,0.00027821126,0.00043653275,0.00013452019,0.0003773024],"domain_scores_gemma":[0.9993986,0.000022625542,0.00012719902,0.00023726809,0.00007521329,0.00013909797],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046133643,0.00027948333,0.0002790445,0.00009177448,0.00029692805,0.00009794102,0.00009398267,0.0002113416,0.000010363767],"category_scores_gemma":[0.00009898575,0.0002828318,0.00004650149,0.00014282438,0.00013284381,0.000033031636,0.00031841133,0.00034619065,0.0000022083198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005098665,0.00021803884,0.0048341034,0.00008160792,0.00003934156,0.000001215167,0.00030492738,6.037288e-7,0.9914191,9.854755e-7,0.0001270246,0.0024632353],"study_design_scores_gemma":[0.003778658,0.0013241668,0.021938166,0.00006711949,0.000042416446,0.000019476523,0.0001913761,0.00016044252,0.9647748,0.0000049830132,0.007323414,0.00037501744],"about_ca_topic_score_codex":0.0006253024,"about_ca_topic_score_gemma":0.0003940336,"teacher_disagreement_score":0.026644286,"about_ca_system_score_codex":0.000056570203,"about_ca_system_score_gemma":0.000044636756,"threshold_uncertainty_score":0.9999624},"labels":[],"label_agreement":null},{"id":"W2112393852","doi":"10.1128/iai.68.6.3667-3673.2000","title":"Antibodies against Thrombospondin-Related Anonymous Protein Do Not Inhibit<i>Plasmodium</i>Sporozoite Infectivity In Vivo","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"York University; Wenner-Gren Foundation; School of Medicine, New York University; National Science Foundation; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Infectivity; Biology; Plasmodium yoelii; Polyclonal antibodies; Monoclonal antibody; Antibody; Apicomplexa; Cell biology; In vivo; Microneme; Plasmodium falciparum; Virology; Immunology","score_opus":0.011480692332166711,"score_gpt":0.26508927670493776,"score_spread":0.25360858437277106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112393852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9666345,0.00015334005,0.000014127671,0.0005315906,0.00006399582,0.0009780326,0.000013053466,0.00014178782,0.031469554],"genre_scores_gemma":[0.99678576,0.00073180196,0.000018306735,0.00024499407,0.000038808557,0.00006463889,0.000017606624,0.00002048794,0.0020775727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99838096,0.00033646275,0.00034797378,0.00028351767,0.00025015,0.00040093728],"domain_scores_gemma":[0.9992357,0.000079649806,0.00007132122,0.00033519286,0.000104350285,0.00017378198],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00075390446,0.00022840596,0.0004221844,0.00031404287,0.00025797414,0.000075430544,0.000054079515,0.00021921656,0.0017646467],"category_scores_gemma":[0.00024009027,0.00020391274,0.00010029221,0.00050382654,0.00018916166,0.00033646965,0.00005374503,0.00087484415,0.00008530623],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025256881,0.0019390355,0.34075642,0.00028455013,0.00023089901,0.00013480322,0.0011132245,0.000058326277,0.5464554,0.000969348,0.00026806534,0.105264254],"study_design_scores_gemma":[0.0056951772,0.0006711274,0.9484246,0.00024471883,0.00003251758,0.00008302891,0.00004689346,0.0005888285,0.03939806,0.00030133172,0.0042290078,0.00028474478],"about_ca_topic_score_codex":0.0030385621,"about_ca_topic_score_gemma":0.00044743446,"teacher_disagreement_score":0.60766816,"about_ca_system_score_codex":0.000112877424,"about_ca_system_score_gemma":0.00011705419,"threshold_uncertainty_score":0.9991479},"labels":[],"label_agreement":null},{"id":"W2112509629","doi":"10.1128/iai.71.5.2318-2325.2003","title":"Trojan Horse Effect: Phagocyte-Mediated <i>Streptococcus iniae</i> Infection of Fish","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Waterloo","keywords":"Biology; Streptococcus iniae; Phagocytosis; Phagocyte; Microbiology; Antibody opsonization; Macrophage; Virulence; Immune system; Opsonin; Pronephros; Serotype; Immunology; In vitro","score_opus":0.015249523075543137,"score_gpt":0.286831656874498,"score_spread":0.2715821337989549,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112509629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98383874,0.00006377447,0.000096679054,0.000032802574,0.00038125407,0.00077311817,0.000013758098,0.00014842232,0.014651456],"genre_scores_gemma":[0.9990065,0.0003512894,0.000021717462,0.00013695628,0.00003920099,0.00012244895,0.00006886671,0.000020451787,0.00023256993],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881893,0.00025984395,0.0003463829,0.00022170952,0.0001378708,0.00021526885],"domain_scores_gemma":[0.99904567,0.00016559486,0.00015569713,0.00032119322,0.0001557831,0.00015605286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028831666,0.0002280339,0.0003895049,0.00023867383,0.00022312952,0.000023578605,0.000020480235,0.00018331461,0.00041814553],"category_scores_gemma":[0.00046027376,0.00019436535,0.0001658873,0.00053250516,0.00015133995,0.00017501651,0.000023417493,0.00033956804,0.00004192042],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011590756,0.00077486946,0.9795858,0.00010325944,0.00019718822,0.0000046707405,0.00008318487,0.000003242759,0.010095275,0.00009937637,0.00036264953,0.008574554],"study_design_scores_gemma":[0.0049048895,0.0022600747,0.8926404,0.000096721924,0.00024666058,0.00015065951,0.000014630857,0.000031522864,0.076420546,0.00006484127,0.022986561,0.00018248694],"about_ca_topic_score_codex":0.0021799596,"about_ca_topic_score_gemma":0.00015199035,"teacher_disagreement_score":0.08694542,"about_ca_system_score_codex":0.00009264269,"about_ca_system_score_gemma":0.000058860354,"threshold_uncertainty_score":0.7925989},"labels":[],"label_agreement":null},{"id":"W2112581716","doi":"10.1128/iai.74.4.2138-2144.2006","title":"Reduced Protective Efficacy of a Blood-Stage Malaria Vaccine by Concurrent Nematode Infection","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Fonds Québécois de la Recherche sur la Nature et les Technologies; McGill University Health Centre; McGill University","keywords":"Heligmosomoides polygyrus; Biology; Malaria; Immune system; Immunology; Immunity; Plasmodium chabaudi; Malaria vaccine; Virology; Immunization; Parasitemia; Plasmodium falciparum","score_opus":0.012264645503544334,"score_gpt":0.28934782825057903,"score_spread":0.2770831827470347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112581716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944459,0.00027297676,0.0013019326,0.00041650017,0.00010842665,0.0010478218,0.000011648248,0.000080117956,0.002314645],"genre_scores_gemma":[0.9989702,0.000114629715,0.000011322569,0.0000290032,0.00007823084,0.00007613764,0.000056049616,0.000012311497,0.0006521325],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99896,0.00020440483,0.00029251067,0.00016773224,0.00017509982,0.00020025816],"domain_scores_gemma":[0.9992648,0.000074167285,0.00013613443,0.00021483419,0.00021366512,0.00009641894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003500146,0.00013894214,0.0002895275,0.00015070036,0.00014881013,0.000025758009,0.00002894959,0.00011083652,0.00026645794],"category_scores_gemma":[0.00031164664,0.0001202897,0.00008881928,0.00025687632,0.000056434157,0.00010924869,0.000039343784,0.00043390482,0.000007684773],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013516021,0.0028758587,0.06668712,0.00045638197,0.00036467737,0.000007174604,0.00012956516,0.000015611215,0.91147316,0.0042702896,0.0012264269,0.011142125],"study_design_scores_gemma":[0.0082642585,0.0012056449,0.8856273,0.00009638514,0.00016500053,0.000060289978,0.00001357901,0.0003531696,0.101263195,0.0001112896,0.0027112036,0.00012864653],"about_ca_topic_score_codex":0.014471063,"about_ca_topic_score_gemma":0.00019441254,"teacher_disagreement_score":0.8189402,"about_ca_system_score_codex":0.00003981241,"about_ca_system_score_gemma":0.00007294008,"threshold_uncertainty_score":0.99209166},"labels":[],"label_agreement":null},{"id":"W2112759994","doi":"10.1128/iai.00161-06","title":"Alcohol Dehydrogenase Restricts the Ability of the Pathogen <i>Candida albicans</i> To Form a Biofilm on Catheter Surfaces through an Ethanol-Based Mechanism","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Dental and Craniofacial Research; National Cancer Institute; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Stanford Diabetes Research Center; National Institute of Allergy and Infectious Diseases; Bristol-Myers Squibb","keywords":"Biofilm; Candida albicans; Microbiology; Corpus albicans; Alcohol dehydrogenase; In vivo; Biology; In vitro; Ethanol; Acetaldehyde; Bacteria; Biochemistry","score_opus":0.023446119362647413,"score_gpt":0.283554618830219,"score_spread":0.2601084994675716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112759994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996172,0.000051949417,0.00030783718,0.0007094888,0.000103005594,0.00067568937,0.00005375517,0.000040539653,0.0018857517],"genre_scores_gemma":[0.99868727,0.000032639542,0.000060375623,0.001077463,0.0000308482,0.000020877585,0.000018424596,0.000011863075,0.000060241277],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987842,0.00029496392,0.00026982347,0.00022390939,0.00023155773,0.0001955687],"domain_scores_gemma":[0.9987954,0.00013914243,0.000104015315,0.00077280955,0.00012296106,0.000065665336],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000595813,0.00015671605,0.00021724352,0.000036372614,0.00037592035,0.000021684406,0.000107542415,0.00010896117,0.000047770656],"category_scores_gemma":[0.0001684797,0.000086178734,0.00014229046,0.00031956428,0.00019299002,0.000106006104,0.000043289365,0.000285702,0.0000047149842],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068345346,0.0011773729,0.16426146,0.000090296664,0.000034775137,0.0000020494533,0.0007296208,0.00005906536,0.83076173,0.00076756405,0.00014334914,0.0012892543],"study_design_scores_gemma":[0.0007503166,0.00084836694,0.6636391,0.000058736645,0.000063089625,0.0000063219527,0.00011052403,0.00014367522,0.33088452,0.0016941002,0.0016857288,0.00011549063],"about_ca_topic_score_codex":0.010065137,"about_ca_topic_score_gemma":0.0019741645,"teacher_disagreement_score":0.4998772,"about_ca_system_score_codex":0.00007524276,"about_ca_system_score_gemma":0.00009643231,"threshold_uncertainty_score":0.9965269},"labels":[],"label_agreement":null},{"id":"W2112794401","doi":"10.1128/iai.70.4.2070-2081.2002","title":"Mice Lacking T and B Lymphocytes Develop Transient Colitis and Crypt Hyperplasia yet Suffer Impaired Bacterial Clearance during <i>Citrobacter rodentium</i> Infection","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Citrobacter rodentium; Biology; Colitis; Microbiology; Immune system; Immunology; Hyperplasia; Citrobacter; Escherichia coli; Enterobacteriaceae","score_opus":0.012886172780245788,"score_gpt":0.23216581871346448,"score_spread":0.2192796459332187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112794401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985324,0.00068090466,0.00004343898,0.000053332176,0.00016939413,0.00017635546,0.0000085775755,0.00002859449,0.00030701788],"genre_scores_gemma":[0.9909542,0.008635232,0.000061424944,0.000063137886,0.00008861104,0.000025509227,0.000014280194,0.000015324478,0.00014226953],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911547,0.00016913975,0.0001587322,0.00024587702,0.00007945324,0.00023132736],"domain_scores_gemma":[0.9996194,0.000023095416,0.000049098075,0.00012031422,0.00010884802,0.00007920304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015942323,0.00015970186,0.00015238179,0.000053792024,0.0004138859,0.00010564746,0.000032038977,0.000117956755,0.00002543802],"category_scores_gemma":[0.000133069,0.00016156989,0.00003103454,0.00011457889,0.00015494037,0.00003166989,0.00012624827,0.00013933997,0.0000023672867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031817358,0.00009622479,0.22999153,0.00014391847,0.000107468455,0.0000022496145,0.00048648418,0.000004435829,0.7643103,0.000007304364,0.00016780676,0.0043641175],"study_design_scores_gemma":[0.0013074934,0.00018255282,0.9499655,0.000033802487,0.000016349937,0.00011930275,0.00003106972,0.000093933806,0.042064697,0.000005996355,0.005990264,0.00018906973],"about_ca_topic_score_codex":0.00058148993,"about_ca_topic_score_gemma":0.0006074216,"teacher_disagreement_score":0.7222456,"about_ca_system_score_codex":0.000035341553,"about_ca_system_score_gemma":0.000018289766,"threshold_uncertainty_score":0.6588628},"labels":[],"label_agreement":null},{"id":"W2112899484","doi":"10.1128/iai.72.7.4172-4187.2004","title":"Contribution of Gene Loss to the Pathogenic Evolution of <i>Burkholderia pseudomallei</i> and <i>Burkholderia mallei</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"U.S. Department of Defense","keywords":"Burkholderia pseudomallei; Biology; Microbiology; Operon; Virulence; Melioidosis; Burkholderia; Gene; Genetics; Arabinose; Mutant; Bacteria; Xylose; Biochemistry","score_opus":0.010839032904717633,"score_gpt":0.24330055063577447,"score_spread":0.23246151773105683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112899484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874506,0.0008037072,0.00953662,0.0007956442,0.00035757964,0.00070197246,0.000032452863,0.00005086434,0.00027058597],"genre_scores_gemma":[0.99841344,0.00086261675,0.00030459187,0.0002030179,0.00009492424,0.00004804453,0.000023790313,0.000017096116,0.000032493903],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99881786,0.000113788235,0.00045296532,0.00021887745,0.00018059743,0.00021590963],"domain_scores_gemma":[0.99881023,0.00005084223,0.00019458267,0.0003989045,0.000408554,0.00013686389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000579285,0.0001879913,0.00038531254,0.00019091462,0.00027016609,0.000020421825,0.000055736833,0.00016056547,0.00003572874],"category_scores_gemma":[0.00021208244,0.00014716448,0.000117572265,0.0005203837,0.000221476,0.00014294598,0.000076853714,0.00023974413,0.0000058221544],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034752185,0.00047426374,0.039496504,0.00012251917,0.00013907031,0.0000025056172,0.00043523105,0.00014222153,0.9533363,0.0030657204,0.00009495494,0.0023431806],"study_design_scores_gemma":[0.00455408,0.0013592233,0.74496466,0.00021508976,0.00029561395,0.0005935045,0.00023195853,0.000043641798,0.24168101,0.00045803137,0.005384695,0.00021850852],"about_ca_topic_score_codex":0.0025375811,"about_ca_topic_score_gemma":0.00017650105,"teacher_disagreement_score":0.7116553,"about_ca_system_score_codex":0.000111323905,"about_ca_system_score_gemma":0.00010888634,"threshold_uncertainty_score":0.60011935},"labels":[],"label_agreement":null},{"id":"W2113249168","doi":"10.1128/iai.01186-09","title":"<i>Salmonella enterica</i>Serovar Typhimurium-Induced Placental Inflammation and Not Bacterial Burden Correlates with Pathology and Fatal Maternal Disease","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Institute for Biological Sciences; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"Biology; Salmonella enterica; Aroa; Microbiology; Immunology; Inflammation; Placenta; Salmonella; Pathogen; Cytokine; Tumor necrosis factor alpha; Bacteria; Enterobacteriaceae; Pregnancy; Fetus","score_opus":0.011757808523618647,"score_gpt":0.21318413088628926,"score_spread":0.2014263223626706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113249168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99899364,0.000023076085,0.0000029282735,0.0003502902,0.00033653073,0.0001377653,0.000023056327,0.000051214167,0.00008151695],"genre_scores_gemma":[0.9993729,0.00016761922,0.000018911991,0.00007061444,0.00025707085,0.000009702752,0.00007691065,0.000001605232,0.00002467522],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992396,0.00015263882,0.00016487131,0.00021749956,0.0000557082,0.00016966861],"domain_scores_gemma":[0.9995564,0.00011965942,0.00009654709,0.00005470444,0.000033701534,0.00013894787],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018683208,0.00014608844,0.00016610822,0.000016361017,0.0002471886,0.000076325865,0.000048382593,0.00012552745,0.00011405053],"category_scores_gemma":[0.000051654242,0.00006593083,0.00002251743,0.000057649962,0.00016046772,0.00017292617,0.000095624644,0.00024716425,0.0000072387143],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030812417,0.000014607224,0.30193943,0.0000060633483,0.00000829195,0.0000058366577,0.00006619297,1.9046587e-7,0.6859066,0.00004370956,0.000005040423,0.011695957],"study_design_scores_gemma":[0.00041030688,0.0003193939,0.9894701,0.0000107743,0.000020412013,0.00031287136,0.00005397531,0.000076384145,0.008241859,0.00011390126,0.0008243018,0.00014571786],"about_ca_topic_score_codex":0.0010019145,"about_ca_topic_score_gemma":0.0004394417,"teacher_disagreement_score":0.6875307,"about_ca_system_score_codex":0.0000060649895,"about_ca_system_score_gemma":0.0000046555265,"threshold_uncertainty_score":0.26885813},"labels":[],"label_agreement":null},{"id":"W2113375673","doi":"10.1128/iai.01184-12","title":"The K1 Capsular Polysaccharide from Acinetobacter baumannii Is a Potential Therapeutic Target via Passive Immunization","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Acinetobacter baumannii; Microbiology; Serotype; Biology; Monoclonal antibody; Bacterial capsule; Immunization; Antibody; Antibody opsonization; Virology; Immunology; Bacteria; Pseudomonas aeruginosa; Virulence; Opsonin; Phagocytosis","score_opus":0.004702980994277419,"score_gpt":0.21373681179867396,"score_spread":0.20903383080439655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113375673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900571,0.00062248996,0.00825794,0.00031858264,0.00034851668,0.00020969757,0.00001101429,0.000018078521,0.0001565791],"genre_scores_gemma":[0.99796766,0.0008371938,0.000093164126,0.0004370829,0.00014392706,0.000013225769,0.00011294572,0.000015434436,0.0003793451],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992108,0.00015766398,0.00019173886,0.00018363433,0.00007905451,0.00017712379],"domain_scores_gemma":[0.9992827,0.000016181364,0.00011324104,0.00040362196,0.00013921727,0.000045044635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000090674526,0.00014654451,0.00010520183,0.000022950602,0.00043664593,0.00014734553,0.00012318492,0.000145573,0.00025018497],"category_scores_gemma":[0.000033773802,0.000109463246,0.000062135565,0.00006484365,0.00013034046,0.000022482176,0.000100253,0.0001489464,0.00004186178],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004414338,0.00003574619,0.021739837,0.0000037739783,0.00011425456,2.8541535e-7,0.000089299276,0.000003979584,0.9709693,0.000022123852,0.0007429752,0.006234252],"study_design_scores_gemma":[0.00048280737,0.00013374594,0.78078234,0.0000112901425,0.00003462087,0.0000116657175,0.00012410413,0.0003888152,0.19791341,0.00093387015,0.018958889,0.00022446089],"about_ca_topic_score_codex":0.0030324818,"about_ca_topic_score_gemma":0.00006124829,"teacher_disagreement_score":0.7730559,"about_ca_system_score_codex":0.000015811765,"about_ca_system_score_gemma":0.00002368526,"threshold_uncertainty_score":0.45842254},"labels":[],"label_agreement":null},{"id":"W2113538633","doi":"10.1128/iai.01129-10","title":"Structure-Function Analysis of the TibA Self-Associating Autotransporter Reveals a Modular Organization","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; Fonds Québécois de la Recherche sur la Nature et les Technologies","keywords":"Biology; Bacterial adhesin; Mutant; Mutagenesis; Adhesion; Extracellular; Escherichia coli; Microbiology; Biofilm; Cell biology; Bacteria; Biochemistry; Genetics; Gene; Chemistry","score_opus":0.009723292717523127,"score_gpt":0.2241036556427211,"score_spread":0.214380362925198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113538633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99840695,0.0000484928,0.0010376826,0.000009648148,0.000058335576,0.00008249985,0.000007035968,0.000012485221,0.0003368528],"genre_scores_gemma":[0.99961686,0.00011160067,0.00012486879,0.00004639946,0.000016591217,0.000002596379,0.000027602622,0.0000056536396,0.000047834907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99949765,0.00013008129,0.000119532975,0.00009442739,0.0000749004,0.00008340289],"domain_scores_gemma":[0.9995129,0.0000067696324,0.000095691124,0.00017298057,0.00019387757,0.000017789187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018478387,0.000061458486,0.000096421216,0.00004755791,0.00017583487,0.00000718508,0.000047433714,0.00007229998,0.00003388925],"category_scores_gemma":[0.00015484665,0.000046544534,0.000053431984,0.00049475406,0.00003503503,0.0000056759854,0.000056904544,0.000085496526,2.2047232e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000073769356,0.000032692107,0.65493065,0.000010102644,0.00055042235,2.4484136e-8,0.00035175416,0.000020980384,0.34379748,0.000039176764,0.000011266331,0.0002480788],"study_design_scores_gemma":[0.00011148408,0.00006346974,0.9630257,0.000003018135,0.00024915682,4.6099746e-7,0.00003995671,0.00014376693,0.036110133,0.00005698572,0.00014781606,0.000048079743],"about_ca_topic_score_codex":0.0004747336,"about_ca_topic_score_gemma":0.00029492486,"teacher_disagreement_score":0.30809504,"about_ca_system_score_codex":0.00001460229,"about_ca_system_score_gemma":0.0000210801,"threshold_uncertainty_score":0.1898031},"labels":[],"label_agreement":null},{"id":"W2113647528","doi":"10.1128/iai.69.4.2172-2179.2001","title":"Effect of Mycobacterial Phospholipids on Interaction of<i>Mycobacterium tuberculosis</i>with Macrophages","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital","funders":"Medical Research Council; British Columbia Lung Association; Medical Research Council Canada; Wellcome Trust","keywords":"Biology; Microbiology; Phagocyte; Mycobacterium tuberculosis; Macrophage; Mycobacterium; Phosphatidylinositol; Phospholipid; Cardiolipin; Phagocytosis; Tuberculosis; Biochemistry; Bacteria; Phosphorylation; In vitro","score_opus":0.013215241871619288,"score_gpt":0.31593046471373676,"score_spread":0.3027152228421175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113647528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961141,0.00006480384,0.000027147684,0.00018205986,0.0003152506,0.0002600876,0.0000069603225,0.00003177808,0.0029978126],"genre_scores_gemma":[0.99818337,0.0014468433,0.000016574304,0.00010962964,0.000117686846,0.000017129581,0.00003286857,0.0000121389685,0.00006377306],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99882156,0.0004435425,0.00026997045,0.0001485684,0.0001308352,0.00018553877],"domain_scores_gemma":[0.9990663,0.00035486254,0.000116702824,0.00024446566,0.000118716154,0.00009898598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057382486,0.00014456284,0.0004320795,0.00016790145,0.000067839916,0.0000083743,0.000032141183,0.00010965491,0.00024221043],"category_scores_gemma":[0.0003977477,0.000097332275,0.00009463978,0.00020430064,0.00014819065,0.00011486461,0.00003423419,0.00032694006,0.0000125925735],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014597375,0.00040730415,0.6242572,0.0004663399,0.00027206374,0.000008792872,0.000121478435,0.000010397446,0.32203934,0.000040345283,0.00034974553,0.037429605],"study_design_scores_gemma":[0.00225925,0.010037874,0.7035134,0.0001899266,0.00010237718,0.0002848255,0.000017226886,0.00004717613,0.27879205,0.0000062220206,0.004662327,0.000087350956],"about_ca_topic_score_codex":0.0019985277,"about_ca_topic_score_gemma":0.00003385269,"teacher_disagreement_score":0.079256184,"about_ca_system_score_codex":0.00004625989,"about_ca_system_score_gemma":0.000022178454,"threshold_uncertainty_score":0.39690948},"labels":[],"label_agreement":null},{"id":"W2113698495","doi":"10.1128/iai.00873-10","title":"Quantitative PCR-Based Competitive Index for High-Throughput Screening of <i>Salmonella</i> Virulence Factors","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Salmonella; Salmonella enterica; Microbiology; Virulence; Congenic; rpoS; Intracellular parasite; Bacteria; Pathogen; Enterobacteriaceae; Mutant; Bacteriophage; Gene; Genetics; Gene expression; Promoter; Escherichia coli","score_opus":0.043024636102674436,"score_gpt":0.2779290546563905,"score_spread":0.23490441855371608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113698495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974704,0.000026444477,0.0015133509,0.00014380258,0.00026292657,0.00018198654,0.00006703913,0.000043341348,0.0002907131],"genre_scores_gemma":[0.9992761,0.000029481485,0.00038310306,0.00015289849,0.000046766105,0.000012254209,0.00008391713,0.0000011115908,0.000014383048],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992148,0.00015584509,0.00021754936,0.00017919387,0.00006524061,0.00016734053],"domain_scores_gemma":[0.9983733,0.0012059752,0.00016696303,0.000058165147,0.00014017684,0.00005539731],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003481756,0.00012512208,0.00023050077,0.000018546412,0.00025038386,0.000017839742,0.000088204666,0.000136068,0.00010274178],"category_scores_gemma":[0.00027447677,0.000056360688,0.00007895172,0.00016188818,0.000218587,0.00010811718,0.00003782862,0.00023206437,0.0000021057572],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013218084,0.00010153657,0.5246853,0.000011342957,0.000019184772,1.396548e-7,0.00007768439,0.00001204502,0.4640299,0.0037046522,0.000028035107,0.007197974],"study_design_scores_gemma":[0.00026225444,0.00060893816,0.95694757,0.000015023421,0.000011472575,0.0000016768885,0.00027998292,0.0002590498,0.03849499,0.0009897471,0.001997812,0.00013147741],"about_ca_topic_score_codex":0.005809633,"about_ca_topic_score_gemma":0.0016954545,"teacher_disagreement_score":0.43226224,"about_ca_system_score_codex":0.0000058343053,"about_ca_system_score_gemma":0.000007049084,"threshold_uncertainty_score":0.8782466},"labels":[],"label_agreement":null},{"id":"W2113743453","doi":"10.1128/iai.70.11.5931-5937.2002","title":"Intestinal Nematode Infection Ameliorates Experimental Colitis in Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":263,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Immune system; Colitis; Immunology; Nematode infection; Biology; Inflammatory bowel disease; Myeloperoxidase; Nematode; Inflammation; Cytokine; Trichuriasis; Disease; Helminths; Medicine; Pathology; Ascariasis","score_opus":0.013014813867831413,"score_gpt":0.2534524380623097,"score_spread":0.2404376241944783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113743453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972601,0.00021300098,0.00006299229,0.000013918272,0.0001276222,0.00011660539,0.0000016151027,0.000024166055,0.0021799908],"genre_scores_gemma":[0.9994119,0.00021544675,0.000020636398,0.00010629733,0.000057234625,0.000030124653,0.00002164191,0.000009444396,0.00012727585],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994346,0.00012197357,0.00013591176,0.00013741698,0.000044068558,0.0001260264],"domain_scores_gemma":[0.999736,0.0000065957497,0.000043552573,0.00011869859,0.000041010404,0.000054144995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009736485,0.00010023112,0.00006850203,0.00006529812,0.00010879966,0.000030673793,0.0000300026,0.00007820748,0.00012348479],"category_scores_gemma":[0.00007741933,0.00011124111,0.00003315887,0.00008257915,0.00006975885,0.000013670039,0.000055883003,0.00011102069,0.000029668914],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015194758,0.00042284097,0.6496566,0.000040315535,0.00001939821,0.00001890217,0.0002783486,0.000045435376,0.34674612,0.00010439713,0.00071676675,0.0017989115],"study_design_scores_gemma":[0.00058713456,0.0001447566,0.9235167,0.000019999216,0.0000047666863,0.000055867735,0.00005130983,0.00037526997,0.0728408,0.000024296849,0.0022339912,0.00014509546],"about_ca_topic_score_codex":0.0008532178,"about_ca_topic_score_gemma":0.00047228625,"teacher_disagreement_score":0.2739053,"about_ca_system_score_codex":0.000026545717,"about_ca_system_score_gemma":0.000010829411,"threshold_uncertainty_score":0.4536281},"labels":[],"label_agreement":null},{"id":"W2113822615","doi":"10.1128/iai.00517-06","title":"Intranasal Boosting with an Adenovirus-Vectored Vaccine Markedly Enhances Protection by Parenteral <i>Mycobacterium bovis</i> BCG Immunization against Pulmonary Tuberculosis","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Colorado State University","keywords":"Vaccination; Mycobacterium bovis; Immunology; Tuberculosis vaccines; Nasal administration; Immunization; Medicine; Mycobacterium tuberculosis; Booster dose; Immune system; Tuberculosis; BCG vaccine; Virology","score_opus":0.011618535774299771,"score_gpt":0.2610818687130713,"score_spread":0.24946333293877154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113822615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99539036,0.00033982022,0.0012158549,0.00086619094,0.00013708933,0.0006007528,0.000020267637,0.00019938701,0.0012302935],"genre_scores_gemma":[0.9968682,0.0011783154,0.000106101535,0.00040150428,0.00024492168,0.00008833732,0.0009492917,0.000034094326,0.00012924838],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99802524,0.0005931747,0.00043014824,0.00034038266,0.00020060205,0.0004104567],"domain_scores_gemma":[0.9990846,0.0000756765,0.00015254934,0.00030415863,0.00021495203,0.0001680937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005400473,0.00026154338,0.00037176092,0.00020075847,0.00046648696,0.0000766411,0.00006502999,0.0001770177,0.00007770993],"category_scores_gemma":[0.00015558249,0.00019518801,0.000064576,0.00039813388,0.00010063389,0.00058189215,0.000051042647,0.0005908451,0.000007849191],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019669419,0.00075471983,0.39450285,0.00017937504,0.00014635055,0.000011464761,0.00010325372,0.00003682347,0.57388526,0.000007640001,0.0011641309,0.027241174],"study_design_scores_gemma":[0.0016958315,0.0020147085,0.9628249,0.00016394773,0.00008615934,0.00031129466,0.00010513897,0.0037139456,0.021019835,0.00003722113,0.0077113765,0.00031568386],"about_ca_topic_score_codex":0.012591638,"about_ca_topic_score_gemma":0.0006811545,"teacher_disagreement_score":0.568322,"about_ca_system_score_codex":0.00013021228,"about_ca_system_score_gemma":0.000048783502,"threshold_uncertainty_score":0.9939836},"labels":[],"label_agreement":null},{"id":"W2113905359","doi":"10.1128/iai.00573-08","title":"Modular Arrangement of Allelic Variants Explains the Divergence in <i>Moraxella catarrhalis</i> UspA Protein Function","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Moraxella catarrhalis; Biology; Genetics; Moraxella (Branhamella) catarrhalis; Peptide sequence; Gene; Nucleic acid sequence; Sequence alignment; Phylogenetic tree; Phenotype; Microbiology; Bacteria; Haemophilus influenzae","score_opus":0.031716167167206384,"score_gpt":0.24853971133195055,"score_spread":0.21682354416474417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113905359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968632,0.00011527601,0.0007309819,0.00033222852,0.00020310303,0.00043977902,0.0000037402538,0.00003018727,0.0012815114],"genre_scores_gemma":[0.9989597,0.0004598579,0.0000071625664,0.00026872737,0.000044671167,0.00005447831,0.000008036935,0.0000067225556,0.00019061727],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992662,0.00014601767,0.00021669046,0.00011818849,0.00013009954,0.00012278093],"domain_scores_gemma":[0.99952656,0.000021002861,0.00007513844,0.0002476897,0.000080392434,0.000049207603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002520583,0.000098651035,0.00015337473,0.00011304579,0.00031816156,0.000005883145,0.000036398804,0.000066968125,0.000078732555],"category_scores_gemma":[0.00006106033,0.00007082056,0.000054739165,0.0002894086,0.00013154728,0.0000998478,0.000037351077,0.00025232116,0.000011421592],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000112026944,0.0006314058,0.54029083,0.00008597118,0.000076098004,0.0000133781705,0.0012179019,0.00014320745,0.4552218,0.0002237216,0.00016478273,0.0018188895],"study_design_scores_gemma":[0.0007990247,0.00034129972,0.9825132,0.000057511443,0.000031445074,0.00009482599,0.00012150136,0.00013939578,0.004865716,0.00007692808,0.010879471,0.000079681144],"about_ca_topic_score_codex":0.0026057386,"about_ca_topic_score_gemma":0.00031523756,"teacher_disagreement_score":0.4503561,"about_ca_system_score_codex":0.000037975497,"about_ca_system_score_gemma":0.0000486256,"threshold_uncertainty_score":0.39391148},"labels":[],"label_agreement":null},{"id":"W2114005632","doi":"10.1128/iai.70.8.4669-4677.2002","title":"<i>Escherichia coli</i> Shiga-Like Toxins Induce Apoptosis and Cleavage of Poly(ADP-Ribose) Polymerase via In Vitro Activation of Caspases","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Health Canada; Hospital for Sick Children","funders":"","keywords":"Apoptosis; Shiga toxin; Biology; Molecular biology; Poly ADP ribose polymerase; DNA fragmentation; Acridine orange; Programmed cell death; Shiga-like toxin; Biochemistry; Escherichia coli; Polymerase; DNA","score_opus":0.011793901737176978,"score_gpt":0.22113735574740684,"score_spread":0.20934345401022986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114005632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981219,0.0004676675,0.0008543025,0.000038302383,0.00007784865,0.00011337957,0.000008236884,0.00000554122,0.00031282072],"genre_scores_gemma":[0.9989057,0.0007748529,0.000092529684,0.00007527888,0.000030956504,0.0000052650084,0.000037736543,0.000008007685,0.0000696381],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994733,0.00007826281,0.00018132804,0.00012290405,0.000056505087,0.00008771172],"domain_scores_gemma":[0.99967,0.0000134176435,0.00010913767,0.00013688354,0.000036348632,0.00003420586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010011707,0.00009228064,0.00012711801,0.00007252311,0.000063201915,0.000007865375,0.000026822634,0.00013183652,0.00001201687],"category_scores_gemma":[0.000021723574,0.00009195903,0.000032820193,0.00012745346,0.00006072283,0.000013669925,0.00004236214,0.0000841149,2.7341588e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089896785,0.0001506306,0.0011671584,0.000029626475,0.000015192616,8.68754e-8,0.000114281356,0.0000034235604,0.9799812,0.000014312556,0.000028564038,0.018405655],"study_design_scores_gemma":[0.00049425283,0.00024530172,0.027744122,0.000015696838,0.000011769592,0.000003467358,0.000055042416,0.0002151451,0.97050583,0.000016327389,0.0006036898,0.00008933069],"about_ca_topic_score_codex":0.0016250717,"about_ca_topic_score_gemma":0.000047738566,"teacher_disagreement_score":0.026576962,"about_ca_system_score_codex":0.000008403993,"about_ca_system_score_gemma":0.000008744878,"threshold_uncertainty_score":0.37499803},"labels":[],"label_agreement":null},{"id":"W2114035410","doi":"10.1128/iai.73.4.2213-2221.2005","title":"Elucidation of the Monoclonal Antibody 5G8-Reactive, Virulence-Associated Lipopolysaccharide Epitope of<i>Haemophilus influenzae</i>and Its Role in Bacterial Resistance to Complement-Mediated Killing","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Medical Research Council","keywords":"Epitope; Haemophilus influenzae; Monoclonal antibody; Phase variation; Biology; Heptose; Virulence; Tetrasaccharide; Molecular biology; Microbiology; Virulence factor; Antigen; Mutant; Antibody; Biochemistry; Gene; Genetics","score_opus":0.015056974603910062,"score_gpt":0.2685308660810267,"score_spread":0.25347389147711663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114035410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984893,0.0003405449,0.000014661637,0.0001946211,0.00047961326,0.00027706867,0.00008080938,0.000021397289,0.0001019586],"genre_scores_gemma":[0.9994563,0.00032722898,0.000012638741,0.000041694653,0.000031616702,0.000012479014,0.000073607225,0.0000075872204,0.00003685537],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989323,0.0003002157,0.00042465684,0.00015223265,0.00002583458,0.00016476163],"domain_scores_gemma":[0.99929875,0.00013038905,0.00025589005,0.00014637967,0.00014932876,0.00001926923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003436774,0.00013089257,0.00026294414,0.00014951653,0.00021553658,0.000014427957,0.00007914518,0.00014862842,0.00012445565],"category_scores_gemma":[0.00023145291,0.000111046495,0.000045244873,0.00025503512,0.00006923543,0.000228126,0.00010482943,0.00023853974,0.000008213431],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021882709,0.00016288136,0.05403077,0.000011791145,0.00006400644,3.003712e-8,0.00043970547,0.000013806218,0.9433683,0.00014448454,0.000024036966,0.0015213406],"study_design_scores_gemma":[0.0011177133,0.000099264296,0.5768065,0.00009041673,0.000023873665,0.000004481413,0.00006243764,0.000028995059,0.4144108,0.000036826255,0.0072104437,0.00010824386],"about_ca_topic_score_codex":0.0032915538,"about_ca_topic_score_gemma":0.0027227069,"teacher_disagreement_score":0.52895755,"about_ca_system_score_codex":0.00004705367,"about_ca_system_score_gemma":0.00003343312,"threshold_uncertainty_score":0.49758667},"labels":[],"label_agreement":null},{"id":"W2114106011","doi":"10.1128/iai.00136-15","title":"Inhibition of Outer Membrane Proteases of the Omptin Family by Aprotinin","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Proteases; Aprotinin; Biology; Bacterial outer membrane; Microbiology; Biochemistry; Enzyme; Internal medicine; Medicine; Escherichia coli","score_opus":0.0216654608135159,"score_gpt":0.23004389289994528,"score_spread":0.2083784320864294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114106011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772674,0.00023354002,0.00007313129,0.000064864995,0.00020143439,0.00019310536,0.000035781446,0.000016112994,0.0014553025],"genre_scores_gemma":[0.99913585,0.00004312038,0.000011913708,0.00006945892,0.0000073485326,0.0000066185503,0.000022070944,0.0000042698002,0.0006993517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99948186,0.00018754667,0.00016710913,0.00006539422,0.000019790315,0.000078311656],"domain_scores_gemma":[0.9996274,0.000028669585,0.0001409118,0.00011833491,0.00007630488,0.000008396384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018222402,0.000070973925,0.00013965336,0.00003117166,0.00008783641,0.0000050801536,0.000038072856,0.00008795175,0.000040634033],"category_scores_gemma":[0.000061114966,0.000049555765,0.000048372756,0.000066899665,0.00028984091,0.000091983384,0.00006446451,0.00015291115,0.000007669534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000692452,0.00012964847,0.005884168,0.000030377412,0.000027064598,4.2027956e-8,0.00039442687,0.0000023583686,0.9889576,0.00008267617,0.0031898909,0.0012325023],"study_design_scores_gemma":[0.0006856152,0.00016417558,0.017648656,0.000058033493,0.000015735164,0.000014039352,0.0003936716,0.0000012111814,0.9759202,0.00008347442,0.004953272,0.000061924606],"about_ca_topic_score_codex":0.0026007395,"about_ca_topic_score_gemma":0.000022596298,"teacher_disagreement_score":0.013037409,"about_ca_system_score_codex":0.000008405067,"about_ca_system_score_gemma":0.000025986916,"threshold_uncertainty_score":0.39315575},"labels":[],"label_agreement":null},{"id":"W2114420534","doi":"10.1128/iai.72.5.2659-2670.2004","title":"Prevention of Pneumococcal Disease in Mice Immunized with Conserved Surface-Accessible Proteins","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Immunoscreening; Epitope; Antigen; Streptococcus pneumoniae; Virology; Microbiology; Fusion protein; Gene; Peptide sequence; Recombinant DNA; Genetics; Antibiotics","score_opus":0.02171698229797228,"score_gpt":0.2909363972315034,"score_spread":0.2692194149335311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114420534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980482,0.000078967925,0.00029494186,0.00030322498,0.000053908163,0.00061534194,0.0000033961094,0.000053861626,0.00054818374],"genre_scores_gemma":[0.99961597,0.00011640616,0.00006792851,0.000045089266,0.000010124301,0.000034009696,0.000012510495,0.000010222658,0.00008773291],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999305,0.0001241049,0.00023574056,0.000118839234,0.000092534,0.00012376311],"domain_scores_gemma":[0.9994961,0.000022593546,0.000099249504,0.00018456217,0.00009954836,0.00009795071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001859479,0.00010883364,0.00021277658,0.00013191816,0.00012931334,0.000014485731,0.00002872096,0.000065505934,0.000035601755],"category_scores_gemma":[0.00006372921,0.00008721387,0.0000553028,0.0003549371,0.00011577254,0.0001768239,0.000027046042,0.0002620169,0.000004192318],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004590253,0.0009935901,0.52869934,0.00019583468,0.000041260464,0.0000087979415,0.00015555965,0.0005094913,0.46850175,0.000086469954,7.1612607e-7,0.0003481527],"study_design_scores_gemma":[0.0039908644,0.00065902184,0.96779066,0.00038929336,0.000058465706,0.00003830699,0.00005270754,0.000054639597,0.026427932,0.00019235635,0.0002456711,0.00010007392],"about_ca_topic_score_codex":0.0026186842,"about_ca_topic_score_gemma":0.0007300129,"teacher_disagreement_score":0.44207382,"about_ca_system_score_codex":0.000062547755,"about_ca_system_score_gemma":0.00024254476,"threshold_uncertainty_score":0.39586845},"labels":[],"label_agreement":null},{"id":"W2114476364","doi":"10.1128/iai.73.10.6846-6851.2005","title":"Antibody Profiles Characteristic of<i>Mycobacterium tuberculosis</i>Infection State","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Tuberculosis; Mycobacterium tuberculosis; Biology; Antigen; Antibody; Immunology; Immune system; Virology; Microbiology; Medicine; Pathology","score_opus":0.020081703106975265,"score_gpt":0.33157580867351377,"score_spread":0.3114941055665385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114476364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607503,0.000164815,0.00038850147,0.0008241876,0.00017538131,0.00028100802,0.000016741355,0.00008407249,0.001990268],"genre_scores_gemma":[0.99436074,0.00463249,0.000086995184,0.000334699,0.00016500663,0.000020168325,0.00018528978,0.000013610462,0.00020099993],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988521,0.00025247186,0.00034621058,0.00017190774,0.00011794506,0.0002593825],"domain_scores_gemma":[0.99924046,0.00009641943,0.00010793538,0.00023696851,0.00017137486,0.00014683206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052332954,0.00013988052,0.00034584006,0.00019715959,0.00013598285,0.000016877377,0.000026009116,0.00010476429,0.00023389858],"category_scores_gemma":[0.0004005606,0.00011805825,0.00009783141,0.00019216748,0.00014221267,0.00021624863,0.000052220956,0.0003706248,0.00006562761],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021339275,0.00030023474,0.6557368,0.00023158567,0.000106990025,0.0000016366713,0.0001444186,0.000004133611,0.3173866,0.00003997822,0.0002417124,0.025592491],"study_design_scores_gemma":[0.0006094888,0.0004787558,0.95870984,0.00006702252,0.000049798797,0.0001498246,0.000007892496,0.00036192962,0.016897248,0.000034898436,0.022531614,0.000101667894],"about_ca_topic_score_codex":0.0026728618,"about_ca_topic_score_gemma":0.000096513926,"teacher_disagreement_score":0.30297303,"about_ca_system_score_codex":0.00006151845,"about_ca_system_score_gemma":0.00004554274,"threshold_uncertainty_score":0.48142755},"labels":[],"label_agreement":null},{"id":"W2114835737","doi":"10.1128/iai.69.1.34-44.2001","title":"Detection of Bacterial Virulence Genes by Subtractive Hybridization: Identification of Capsular Polysaccharide of <i>Burkholderia pseudomallei</i> as a Major Virulence Determinant","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Medical Research Council Canada; U.S. Department of Defense","keywords":"Biology; Suppression subtractive hybridization; Burkholderia pseudomallei; Microbiology; Virulence; Melioidosis; Burkholderia; Immunoelectron microscopy; Gene; Bacteria; Genetics; Complementary DNA; cDNA library","score_opus":0.010483559710918602,"score_gpt":0.25622852874135293,"score_spread":0.24574496903043433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114835737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923619,0.0003716546,0.006131392,0.000029903935,0.00048478186,0.0004159331,0.000034799425,0.00003636729,0.0001332356],"genre_scores_gemma":[0.9964475,0.0032503738,0.00006519562,0.000019865984,0.000060939055,0.000037978287,0.000026246144,0.000017675156,0.00007422795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985415,0.00014053404,0.00072432886,0.00023086662,0.00021055098,0.00015222543],"domain_scores_gemma":[0.9983661,0.00006277025,0.0006511107,0.00035955195,0.00048188088,0.00007856445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040768663,0.00017483534,0.00039254676,0.00025312754,0.00015657017,0.00001776223,0.00006329009,0.0001492931,0.00014387225],"category_scores_gemma":[0.00021843621,0.0001742954,0.00011982268,0.0005122475,0.00021353461,0.00037599186,0.000041221097,0.00016764742,0.0000040018285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040124342,0.00043402702,0.009921702,0.00015514303,0.00007077004,0.0000014028554,0.00019439372,0.000004758769,0.97601634,0.000027394295,0.000011385394,0.012761447],"study_design_scores_gemma":[0.0010726119,0.0005990272,0.102769725,0.000119418204,0.00018879895,0.00024786685,0.00014064946,0.00017015649,0.89390445,0.000032791126,0.000629645,0.00012487745],"about_ca_topic_score_codex":0.0056644604,"about_ca_topic_score_gemma":0.000080235666,"teacher_disagreement_score":0.092848025,"about_ca_system_score_codex":0.000040621886,"about_ca_system_score_gemma":0.000081005004,"threshold_uncertainty_score":0.8563008},"labels":[],"label_agreement":null},{"id":"W2114899858","doi":"10.1128/iai.00080-07","title":"Endogenous Interleukin-18 Improves the Early Antimicrobial Host Response in Severe Melioidosis","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Melioidosis; Burkholderia pseudomallei; Biology; Immunology; Immune system; Interferon gamma; Pathogenesis; Interleukin 10; Interleukin; Cytokine; Microbiology; Bacteria","score_opus":0.028206270455606017,"score_gpt":0.27215501582219076,"score_spread":0.24394874536658473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114899858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949054,0.00010517353,0.00015935567,0.0004582461,0.00057342043,0.0004099596,0.0000044825056,0.00008117945,0.0033027704],"genre_scores_gemma":[0.99859685,0.00031237156,0.000050389026,0.00058536005,0.00011913068,0.000016276177,0.000004665224,0.000018674435,0.00029628334],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894226,0.00019495211,0.00030749297,0.00017692213,0.00010065582,0.00027775014],"domain_scores_gemma":[0.99916506,0.00023401064,0.000081185644,0.00032457375,0.0001065061,0.000088646884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013688848,0.00016132834,0.00021463547,0.00033633003,0.00033312954,0.00006265442,0.000055817436,0.00014632638,0.00011178368],"category_scores_gemma":[0.00026836852,0.0001206882,0.00009776636,0.0005243749,0.0001444609,0.00015539276,0.00007336885,0.0005491761,0.000025744304],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026652513,0.0004038623,0.091970205,0.000039986833,0.00006926009,0.000022070497,0.0017098483,0.0000011795518,0.88740253,0.00002847384,0.00033823613,0.015349087],"study_design_scores_gemma":[0.0016797994,0.00079767045,0.9088597,0.00008040122,0.000055296852,0.0008128848,0.00029317266,0.000008569944,0.07772179,0.000010472359,0.009535873,0.00014436597],"about_ca_topic_score_codex":0.007247286,"about_ca_topic_score_gemma":0.0004951394,"teacher_disagreement_score":0.8168895,"about_ca_system_score_codex":0.00012221323,"about_ca_system_score_gemma":0.00006621995,"threshold_uncertainty_score":0.99936354},"labels":[],"label_agreement":null},{"id":"W2115071562","doi":"10.1128/iai.69.1.129-136.2001","title":"Granulocyte-Macrophage Colony-Stimulating Factor-Deficient Mice Have Impaired Resistance to Blood-Stage Malaria","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Leukocytosis; Biology; Plasmodium chabaudi; Parasitemia; Cytokine; Immunology; Spleen; Granulocyte macrophage colony-stimulating factor; Tumor necrosis factor alpha; Erythropoiesis; Haematopoiesis; Hematopoietic growth factor; Interferon gamma; Macrophage colony-stimulating factor; Macrophage; Internal medicine; Anemia; Malaria; Medicine; Plasmodium falciparum; Stem cell","score_opus":0.02511837035541518,"score_gpt":0.3034023060088101,"score_spread":0.2782839356533949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115071562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98898304,0.00022488818,0.0012106041,0.0010789332,0.00011332714,0.00075620785,0.00002241905,0.00011153812,0.007499018],"genre_scores_gemma":[0.98975235,0.00010945461,0.00014018187,0.00041093657,0.00007133633,0.000041430678,0.000018099758,0.0000176165,0.009438601],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99864465,0.00019293034,0.00026246658,0.00024635743,0.0002666889,0.00038689908],"domain_scores_gemma":[0.99895346,0.00012553128,0.00006856744,0.0003343079,0.00020192045,0.00031618576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043060424,0.00017001186,0.00027619684,0.0001690833,0.0004199851,0.00008537595,0.00006584982,0.00011029373,0.0005725705],"category_scores_gemma":[0.0005992461,0.00015538972,0.00008530444,0.00029589338,0.00006365347,0.000108286295,0.00007851675,0.00045174424,0.000041680378],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004781913,0.0012185525,0.54648644,0.0003541545,0.00028829684,0.00032395314,0.0014387113,0.00017442368,0.4348838,0.0012900685,0.00067495316,0.00808476],"study_design_scores_gemma":[0.003673844,0.00075601955,0.97225004,0.00008764665,0.00006247489,0.00006543288,0.000118893215,0.0012257128,0.005201928,0.000025991916,0.01633718,0.00019485467],"about_ca_topic_score_codex":0.0026272833,"about_ca_topic_score_gemma":0.0010403993,"teacher_disagreement_score":0.42968187,"about_ca_system_score_codex":0.00009635807,"about_ca_system_score_gemma":0.000070124894,"threshold_uncertainty_score":0.6336609},"labels":[],"label_agreement":null},{"id":"W2115629677","doi":"10.1128/iai.73.6.3540-3546.2005","title":"Vaccination of Cattle with a CpG Oligodeoxynucleotide-Formulated Mycobacterial Protein Vaccine and<i>Mycobacterium bovis</i>BCG Induces Levels of Protection against Bovine Tuberculosis Superior to Those Induced by Vaccination with BCG Alone","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Vaccination; Mycobacterium bovis; BCG vaccine; Tuberculosis; Mycobacterium tuberculosis; Antigen; Immunization; Tuberculosis vaccines; Virology; Immunology; Adjuvant; Medicine; Interferon gamma; Biology; Immune system","score_opus":0.02310474754851237,"score_gpt":0.2868598978679677,"score_spread":0.2637551503194553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115629677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955175,0.00006485684,0.00038261872,0.0018121004,0.000047058908,0.0019207831,0.000052066356,0.00007589366,0.00012714698],"genre_scores_gemma":[0.9987864,0.0001978957,0.0003466429,0.00017914726,0.000090699716,0.0002103778,0.00010577958,0.00003639358,0.00004667506],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980555,0.00035028384,0.00062445947,0.00035586022,0.00027592058,0.00033796218],"domain_scores_gemma":[0.9984484,0.000067518275,0.0002983246,0.00032342543,0.00063618034,0.00022618323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007503082,0.0002969277,0.0006746473,0.00045493632,0.00018375898,0.000033505148,0.00006517927,0.00023864907,0.00013614801],"category_scores_gemma":[0.00042259062,0.00020974304,0.00005362618,0.0006626091,0.000038052323,0.00058095815,0.00008001334,0.00041334206,0.0000033217646],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038031114,0.00048500218,0.0203692,0.00032465166,0.00020305616,7.902983e-7,0.0004680644,0.000017706101,0.92164946,0.000011143532,0.00007895477,0.05258885],"study_design_scores_gemma":[0.0033555198,0.0044403435,0.61003405,0.00020241691,0.000078685895,0.000057186742,0.00006197157,0.00023762464,0.38094658,0.0000070239375,0.0003942784,0.0001843343],"about_ca_topic_score_codex":0.003405501,"about_ca_topic_score_gemma":0.0011120199,"teacher_disagreement_score":0.5896648,"about_ca_system_score_codex":0.00016095383,"about_ca_system_score_gemma":0.00011003483,"threshold_uncertainty_score":0.85530734},"labels":[],"label_agreement":null},{"id":"W2115787145","doi":"10.1128/iai.00573-09","title":"Major Secretory Antigens of the Helminth <i>Fasciola hepatica</i> Activate a Suppressive Dendritic Cell Phenotype That Attenuates Th17 Cells but Fails To Activate Th2 Immune Responses","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Biotechnology and Biological Sciences Research Council; Dublin City University","keywords":"Biology; Immune system; Dendritic cell; Antigen presentation; Antigen; Immunology; Cell biology; T cell","score_opus":0.013770974320784713,"score_gpt":0.25967221746347574,"score_spread":0.24590124314269102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115787145","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958175,0.0005251384,0.00011785002,0.0003632356,0.0008861706,0.0004036152,0.000106657055,0.00006118165,0.0017186404],"genre_scores_gemma":[0.9971118,0.0003253406,0.000027313197,0.00035829496,0.00002522678,0.000016853735,0.000026651542,0.000015852505,0.002092697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836814,0.00062813447,0.0003252485,0.00025793357,0.00005994691,0.00036059393],"domain_scores_gemma":[0.9985772,0.00044945092,0.00025037627,0.0005261915,0.00014920975,0.000047578666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022846337,0.00025699203,0.00036402643,0.0001582196,0.0007195498,0.000057003803,0.00022941496,0.00020549794,0.00034957106],"category_scores_gemma":[0.00014647553,0.00019547835,0.00017793087,0.00021742257,0.00024855946,0.00031340984,0.00014585524,0.0006138664,0.00014789452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053783786,0.0002768762,0.010190743,0.000019748639,0.00011115965,0.0000010526844,0.001066729,0.0000073154356,0.98615277,0.000052684685,0.00040839685,0.0011746685],"study_design_scores_gemma":[0.0004906191,0.0004069798,0.28071782,0.000076572855,0.00006459192,0.000027683527,0.00047066162,0.0000029349633,0.713619,0.00007922052,0.0038780135,0.00016589522],"about_ca_topic_score_codex":0.0018275823,"about_ca_topic_score_gemma":0.00008501274,"teacher_disagreement_score":0.27253377,"about_ca_system_score_codex":0.00005182402,"about_ca_system_score_gemma":0.00006323547,"threshold_uncertainty_score":0.7971376},"labels":[],"label_agreement":null},{"id":"W2116151923","doi":"10.1128/iai.73.9.5426-5437.2005","title":"Cable Pili and the 22-Kilodalton Adhesin Are Required for <i>Burkholderia cenocepacia</i> Binding to and Transmigration across the Squamous Epithelium","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Bacterial adhesin; Pilus; Mutant; Burkholderia cenocepacia; Biology; Microbiology; Operon; Fimbriae Proteins; Fimbria; Molecular biology; Gene; Virulence; Biochemistry","score_opus":0.022364134200682975,"score_gpt":0.32221111297197425,"score_spread":0.2998469787712913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116151923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899519,0.0010435847,0.001607047,0.0059556384,0.0000833649,0.0011103983,0.00003472198,0.0000405789,0.0001727486],"genre_scores_gemma":[0.9979196,0.0006937448,0.0002936661,0.0004140889,0.00011254112,0.00010490855,0.000012459361,0.000013355679,0.0004356113],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991191,0.00014310663,0.0001886996,0.00016865288,0.00013551542,0.0002449489],"domain_scores_gemma":[0.999055,0.00047658398,0.000063168955,0.00020375627,0.00010303245,0.00009843042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092190376,0.00012250606,0.00020280457,0.000050317212,0.00086185604,0.0001294081,0.000042759613,0.00005668211,0.000016674254],"category_scores_gemma":[0.00064760726,0.00007181602,0.000040955423,0.00017935202,0.0002960639,0.0002159573,0.00004157623,0.00020139945,0.0000031691256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0103651285,0.00050654483,0.041933637,0.0010409636,0.0001916276,0.0000030168835,0.02605198,0.00018255101,0.660451,0.00069594104,0.004348748,0.2542289],"study_design_scores_gemma":[0.021545218,0.0030092446,0.4946744,0.0005267742,0.0002625259,0.00042463938,0.008649288,0.007557264,0.1377529,0.00097462465,0.32399195,0.00063114613],"about_ca_topic_score_codex":0.0012553824,"about_ca_topic_score_gemma":0.0015390372,"teacher_disagreement_score":0.52269804,"about_ca_system_score_codex":0.00004951185,"about_ca_system_score_gemma":0.000024826455,"threshold_uncertainty_score":0.6628787},"labels":[],"label_agreement":null},{"id":"W2116178249","doi":"10.1128/iai.69.3.1420-1427.2001","title":"cDNA Array Analysis of Altered Gene Expression in Human Endothelial Cells in Response to<i>Chlamydia pneumoniae</i>Infection","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Heart and Stroke Foundation of Canada","keywords":"Biology; Chlamydophila pneumoniae; Chemokine; Gene expression; Molecular biology; Immunology; Microbiology; Gene; Chlamydia; Chlamydiaceae; Immune system","score_opus":0.023380202470639797,"score_gpt":0.3119182838794305,"score_spread":0.28853808140879067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116178249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977494,0.00007627481,0.0005818478,0.000050382554,0.00039395606,0.00040195716,0.000024128378,0.000046115492,0.0006759715],"genre_scores_gemma":[0.99899703,0.00032927835,0.000026373553,0.000018855506,0.000024116194,0.000061362465,0.000042781314,0.000013835959,0.0004863686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9970072,0.0017197574,0.00050572644,0.00038311418,0.00006448959,0.0003197216],"domain_scores_gemma":[0.99892026,0.0002760044,0.00013816325,0.0004967508,0.0001326225,0.00003622347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016677153,0.00018260955,0.00041959767,0.002288343,0.00022983355,0.000022281842,0.00009394532,0.00023532215,0.00037684123],"category_scores_gemma":[0.0003606227,0.00018337122,0.00012384224,0.0020111888,0.00015688599,0.00021910892,0.00007908534,0.0006496337,0.00005163649],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006132926,0.0004335905,0.35810634,0.000006098181,0.0000925132,0.0000014480146,0.0004886361,0.000542942,0.63881546,0.000004467723,0.00001364567,0.000881562],"study_design_scores_gemma":[0.0006283263,0.00018932366,0.5333394,0.000016789221,0.000029523313,0.000015575904,0.000030107498,0.0000045720294,0.46415263,0.000018738934,0.0014831263,0.00009191154],"about_ca_topic_score_codex":0.010599578,"about_ca_topic_score_gemma":0.002795696,"teacher_disagreement_score":0.17523304,"about_ca_system_score_codex":0.00017593607,"about_ca_system_score_gemma":0.000043463362,"threshold_uncertainty_score":0.9959889},"labels":[],"label_agreement":null},{"id":"W2116204780","doi":"10.1128/iai.68.9.5126-5131.2000","title":"Interleukin 18 Restores Defective Th1 Immunity to<i>Candida albicans</i>in Caspase 1-Deficient Mice","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Candida albicans; Caspase 1; Tumor necrosis factor alpha; Immune system; Interleukin; Immunity; Microbiology; Immunology; Caspase; Cytokine; Interferon gamma; Interleukin 15; Inflammation; Caspase 3; Apoptosis; Programmed cell death; Inflammasome","score_opus":0.0077169741440992175,"score_gpt":0.24963453014904471,"score_spread":0.2419175560049455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116204780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986321,0.0005575758,0.0000763951,0.000068624155,0.00015171686,0.0002502488,0.00000886861,0.000021552096,0.012544044],"genre_scores_gemma":[0.99757814,0.00084420166,0.000021606998,0.0004790881,0.000038270384,0.00004214383,0.000072087336,0.000017564127,0.0009069139],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988898,0.00025873017,0.00023705036,0.00025815272,0.000079999656,0.00027628476],"domain_scores_gemma":[0.9994192,0.000021737067,0.00004715722,0.000368648,0.00006901448,0.00007425117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030842746,0.00019035622,0.00016599748,0.00012466914,0.00024237223,0.000042754004,0.00012280658,0.00013681357,0.00036366578],"category_scores_gemma":[0.00010165788,0.00019274298,0.000084471554,0.00023451439,0.00010732777,0.00001504184,0.000103089646,0.00027945632,0.000047804107],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002037642,0.0010651866,0.08976849,0.00006750285,0.00018339176,0.000012804696,0.0043939627,0.0009846097,0.8037113,0.00010240289,0.003553132,0.0941196],"study_design_scores_gemma":[0.0021878746,0.0014005885,0.62703097,0.00007878007,0.000032409072,0.00006158931,0.0010285748,0.00006517575,0.15657216,0.00011283413,0.21076375,0.0006653078],"about_ca_topic_score_codex":0.009192699,"about_ca_topic_score_gemma":0.0035187257,"teacher_disagreement_score":0.64713913,"about_ca_system_score_codex":0.00004947746,"about_ca_system_score_gemma":0.000051654646,"threshold_uncertainty_score":0.9974052},"labels":[],"label_agreement":null},{"id":"W2116333872","doi":"10.1128/iai.69.12.7596-7602.2001","title":"Identification, Characterization, and Variation in Expression of Two Serologically Distinct O-Antigen Epitopes in Lipopolysaccharides of <i>Campylobacter fetus</i> Serotype A Strains","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Epitope; Serotype; Campylobacter fetus; Biology; Antigen; Monoclonal antibody; Microbiology; Fetus; Antigenic variation; Lipopolysaccharide; Virology; Antibody; Molecular biology; Immunology; Pregnancy","score_opus":0.020030521238126354,"score_gpt":0.2524314696976787,"score_spread":0.23240094845955236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116333872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993698,0.000043665772,0.0001390733,0.00016244128,0.0000595716,0.00016055745,0.000015537058,0.0000148912295,0.000034460638],"genre_scores_gemma":[0.99901944,0.00080902665,0.0000144581845,0.0000534872,0.000028574234,0.000010308143,0.00004932314,7.8997874e-7,0.000014617538],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988701,0.00032613322,0.0004497271,0.00017274488,0.000060993803,0.00012030073],"domain_scores_gemma":[0.99945235,0.00013619445,0.0002423985,0.000059546426,0.00007759908,0.000031936404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005781348,0.00009492906,0.00022137376,0.000043452623,0.00006562842,0.000016788881,0.0000663041,0.00010173132,0.00008174082],"category_scores_gemma":[0.00016482903,0.000048034206,0.000026471915,0.00031779768,0.0000780556,0.00020110578,0.000050709277,0.00010740389,9.353506e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024466795,0.00006618709,0.5060426,0.0000049433197,0.0000017268367,1.9223975e-7,0.00014540949,0.0000015927803,0.48816332,0.000039349583,5.738594e-7,0.0055096573],"study_design_scores_gemma":[0.00022142557,0.00009890439,0.9901842,0.000032278436,0.0000039624015,0.0000064520905,0.000050629864,0.000056803514,0.008511024,0.000650081,0.00011022854,0.00007403295],"about_ca_topic_score_codex":0.0030912645,"about_ca_topic_score_gemma":0.0022432401,"teacher_disagreement_score":0.48414162,"about_ca_system_score_codex":0.000010803486,"about_ca_system_score_gemma":0.000005273015,"threshold_uncertainty_score":0.4673088},"labels":[],"label_agreement":null},{"id":"W2116355513","doi":"10.1128/iai.06339-11","title":"PmpG <sub>303-311</sub> , a Protective Vaccine Epitope That Elicits Persistent Cellular Immune Responses in Chlamydia muridarum-Immune Mice","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Epitope; Biology; Immune system; Antigen; Virology; Immunology; Chlamydia; T cell; Antigen presentation; Chlamydia trachomatis; Microbiology","score_opus":0.027614777853212584,"score_gpt":0.27243929460250166,"score_spread":0.24482451674928907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116355513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98128724,0.014607449,0.0001312259,0.00030400194,0.0011728633,0.0013368533,0.000014548272,0.00016596598,0.000979855],"genre_scores_gemma":[0.9967433,0.0021411919,0.000011306206,0.000039984232,0.000101721955,0.00029792765,0.00006685569,0.000046310226,0.0005513763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9957003,0.0022131847,0.00057848275,0.0005093291,0.00011328312,0.0008854066],"domain_scores_gemma":[0.9981481,0.00044363175,0.00024786257,0.0007843801,0.00029488836,0.000081144],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0025136592,0.00041818447,0.00057335646,0.00082300825,0.0008612128,0.000062564184,0.00021581067,0.00047494937,0.00038452412],"category_scores_gemma":[0.0010970142,0.00039896744,0.00026319388,0.00078911067,0.0003216475,0.0007783851,0.00032283145,0.0018808382,0.0006044954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009266104,0.0010892797,0.066344626,0.000055934674,0.00028516733,0.0000030210404,0.0017234604,0.00001196807,0.91777533,0.000055161807,0.00006125684,0.011668164],"study_design_scores_gemma":[0.0011957355,0.00031431022,0.47118065,0.000051930136,0.000037199086,0.00017669295,0.00036702608,0.0000036881193,0.523312,0.000028496823,0.0030910573,0.0002412405],"about_ca_topic_score_codex":0.0050849495,"about_ca_topic_score_gemma":0.00016194045,"teacher_disagreement_score":0.40483603,"about_ca_system_score_codex":0.0003795811,"about_ca_system_score_gemma":0.00011681118,"threshold_uncertainty_score":0.9998462},"labels":[],"label_agreement":null},{"id":"W2116788917","doi":"10.1128/iai.73.3.1275-1283.2005","title":"<i>Vibrio parahaemolyticus</i> Disruption of Epithelial Cell Tight Junctions Occurs Independently of Toxin Production","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Health Sciences Centre; University of Calgary","funders":"Fondation pour la Recherche Médicale; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency","keywords":"Vibrio parahaemolyticus; Tight junction; Paracellular transport; Biology; Toxin; Occludin; Hemolysin; Virulence; Microbiology; Cholera toxin; Vibrio cholerae; Pneumolysin; Barrier function; Bacteria; Cell biology; Permeability (electromagnetism); Biochemistry; Gene; Membrane","score_opus":0.012114594510183646,"score_gpt":0.26657105184185487,"score_spread":0.2544564573316712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116788917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981026,0.00019881588,0.00034190057,0.00012400666,0.00023675963,0.00017147981,0.000023222503,0.000009946113,0.00079124235],"genre_scores_gemma":[0.9978674,0.0011911083,0.00010101939,0.000015703483,0.00015023742,0.000012384794,0.000047566635,0.00000747573,0.0006070698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993056,0.00010730991,0.00020957575,0.00015142589,0.00010793215,0.00011816556],"domain_scores_gemma":[0.9994619,0.000008144038,0.00012150429,0.00021686625,0.00015542858,0.00003617879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022022545,0.000095112984,0.00012764438,0.00007043681,0.00011329269,0.0000096942385,0.000047580263,0.00008603178,0.00002101469],"category_scores_gemma":[0.00011570384,0.000088479486,0.000060309936,0.000106376916,0.00015947362,0.000018574217,0.00008941914,0.000110944246,0.0000045184834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011196163,0.0002095093,0.009763159,0.000044600663,0.000037339705,6.5419506e-8,0.00010794855,0.000044586497,0.9844891,0.000010171702,0.000396923,0.004784668],"study_design_scores_gemma":[0.0004256502,0.00031586798,0.1061262,0.000012450593,0.00002025834,0.000009304808,0.000057591697,0.000014163846,0.8799441,0.000016479691,0.012974942,0.00008303558],"about_ca_topic_score_codex":0.00027146173,"about_ca_topic_score_gemma":0.00024138056,"teacher_disagreement_score":0.10454501,"about_ca_system_score_codex":0.000017941456,"about_ca_system_score_gemma":0.000040200084,"threshold_uncertainty_score":0.36080888},"labels":[],"label_agreement":null},{"id":"W2116817862","doi":"10.1128/iai.01370-12","title":"N-Glycosylation of Campylobacter jejuni Surface Proteins Promotes Bacterial Fitness","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"Alberta Innovates","keywords":"Campylobacter jejuni; Proteases; Biology; Microbiology; Protease; Glycosylation; Biochemistry; N-linked glycosylation; Glycan; Enzyme; Bacteria; Glycoprotein","score_opus":0.020903913085863,"score_gpt":0.2247316981573396,"score_spread":0.20382778507147659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116817862","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846554,0.000027044307,0.00001614621,0.00029180065,0.00019070298,0.00034441,0.000010284993,0.00005064903,0.0006034339],"genre_scores_gemma":[0.99958193,0.000054456978,0.000049265698,0.000044983626,0.00009272706,0.000016203996,0.00006791152,8.474405e-7,0.00009166497],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999147,0.0002607015,0.0002306132,0.00014154565,0.00006249959,0.00015766922],"domain_scores_gemma":[0.9994857,0.00014693712,0.00013112133,0.00006234939,0.0001181035,0.000055808177],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024397814,0.000108944085,0.00018224506,0.000010146477,0.0001475196,0.00003680723,0.000067885914,0.00012430688,0.0012998831],"category_scores_gemma":[0.00010147323,0.00004585402,0.000051599956,0.00015472807,0.000083519706,0.00023626772,0.000055471057,0.0001163212,0.000030264287],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021019307,0.0001063563,0.225041,0.00001069881,0.000010637599,8.609422e-8,0.000068259054,0.0000016180038,0.7538354,0.00005541065,0.00006842758,0.020781115],"study_design_scores_gemma":[0.0001313025,0.0003004913,0.9751268,0.000013044204,0.0000062306367,0.000007571605,0.000033785276,0.00006320359,0.021163706,0.0006360298,0.002411943,0.000105866675],"about_ca_topic_score_codex":0.011196599,"about_ca_topic_score_gemma":0.0005780522,"teacher_disagreement_score":0.75008583,"about_ca_system_score_codex":0.000012308005,"about_ca_system_score_gemma":0.000005129773,"threshold_uncertainty_score":0.99961305},"labels":[],"label_agreement":null},{"id":"W2116984251","doi":"10.1128/iai.06388-11","title":"Virulence of Escherichia coli Clinical Isolates in a Murine Sepsis Model in Relation to Sequence Type ST131 Status, Fluoroquinolone Resistance, and Virulence Genotype","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Instituto Universitario de Tecnología Industrial de Asturias","keywords":"Virulence; Biology; Microbiology; Escherichia coli; Genotype; Pathogen; Antibiotic resistance; Fimbria; Multiple drug resistance; Virology; Drug resistance; Gene; Antibiotics; Genetics","score_opus":0.045938110827378344,"score_gpt":0.3525996499360305,"score_spread":0.3066615391086521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116984251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722564,0.0018431046,0.00034063152,0.000046732293,0.000051187013,0.0001975796,0.0000071049967,0.000006864881,0.0002811519],"genre_scores_gemma":[0.9889802,0.009235657,0.0015595832,0.00007805408,0.000019034702,0.000018057117,0.000008143916,0.00000777439,0.00009350234],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902064,0.00021958376,0.000273918,0.00017842739,0.00007251263,0.00023493737],"domain_scores_gemma":[0.99950004,0.000048914895,0.000071453826,0.00018611306,0.0001091828,0.0000842867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006502102,0.00010120527,0.00016665497,0.00007959074,0.0000641952,0.000009341945,0.000054148284,0.00011877974,0.0000040147197],"category_scores_gemma":[0.0006771117,0.00010260888,0.000018621262,0.0003032202,0.00014196752,0.000028153749,0.00019063112,0.0002301797,0.0000017106664],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003372694,0.00013278013,0.5982542,0.000047760666,0.000015338184,2.1220164e-7,0.0002999574,0.00016601384,0.39974767,0.00006256035,0.000031275933,0.0009049447],"study_design_scores_gemma":[0.00042509395,0.00029171427,0.9893796,0.000057174184,0.000005708541,6.629031e-7,0.000052626976,0.0016825104,0.007030727,0.000079167396,0.00087195536,0.00012306085],"about_ca_topic_score_codex":0.00082280993,"about_ca_topic_score_gemma":0.0012353602,"teacher_disagreement_score":0.39271694,"about_ca_system_score_codex":0.000029870835,"about_ca_system_score_gemma":0.00006526819,"threshold_uncertainty_score":0.41842684},"labels":[],"label_agreement":null},{"id":"W2117110882","doi":"10.1128/iai.72.1.414-429.2004","title":"GeneExpression in HL60 Granulocytoids and Human PolymorphonuclearLeukocytes Exposed to<i>Candidaalbicans</i>†","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec; Université de Montréal; McGill University Health Centre; Biotechnology Research Institute","funders":"","keywords":"Candida albicans; Biology; Corpus albicans; Effector; Microbiology; HL60; Population; Gene expression; Hypha; Dimorphic fungus; Gene; Pathogen; Yeast; Cell biology; Cell; Genetics; Medicine","score_opus":0.018473069085639338,"score_gpt":0.28386057430234063,"score_spread":0.2653875052167013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117110882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953773,0.00026477152,0.00007332902,0.00006543818,0.000055551078,0.00023095455,0.0000019961017,0.000038638067,0.003892012],"genre_scores_gemma":[0.9989772,0.00018830354,0.00009611506,0.0003390782,0.00001647402,0.000008555086,0.0000042164997,0.00001068253,0.00035936688],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992215,0.00011480678,0.00019429589,0.00019467455,0.000102618265,0.00017207212],"domain_scores_gemma":[0.99953735,0.000033322645,0.00003076086,0.00021417196,0.00004042817,0.00014396817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031819672,0.00011808157,0.00021317495,0.0001346943,0.0002188582,0.000026902982,0.00002154091,0.00008561424,0.00016226889],"category_scores_gemma":[0.00013296497,0.00010365088,0.000034704357,0.00019395808,0.0000938144,0.000094581315,0.000028167457,0.00023619896,0.00000705618],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014550822,0.00012644356,0.6769438,0.00003950082,0.000006868548,0.0000047643,0.0003849566,4.8953393e-7,0.3192266,0.00023565914,0.000086244545,0.0027991834],"study_design_scores_gemma":[0.0012818894,0.00035908676,0.94319826,0.00008553308,0.000012551719,0.000024173147,0.00022783644,0.0000057646866,0.051221486,0.00013672865,0.0033363565,0.00011034043],"about_ca_topic_score_codex":0.0014025478,"about_ca_topic_score_gemma":0.00065926654,"teacher_disagreement_score":0.26800513,"about_ca_system_score_codex":0.000058120666,"about_ca_system_score_gemma":0.000033042175,"threshold_uncertainty_score":0.422676},"labels":[],"label_agreement":null},{"id":"W2117111023","doi":"10.1128/iai.00653-10","title":"Evidence for the Horizontal Transfer of an Unusual Capsular Polysaccharide Biosynthesis Locus in Marine Bacteria","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Vibrio vulnificus; Locus (genetics); Horizontal gene transfer; Genetics; Gene; Genome; Operon; Bacteria; Microbiology; Escherichia coli","score_opus":0.0305598413206695,"score_gpt":0.30973590470162216,"score_spread":0.27917606338095263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117111023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992075,0.00009183568,0.0001958784,0.000110361696,0.00013369712,0.0002162691,0.000017566117,0.0000048886336,0.000021999373],"genre_scores_gemma":[0.9991234,0.00064414344,0.0000757115,0.00001627622,0.000070463706,0.000034884597,0.000011437982,0.000007348741,0.0000163125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949074,0.00008199129,0.00012714382,0.00012419804,0.000050437106,0.00012546823],"domain_scores_gemma":[0.9995909,0.00006717402,0.000020965155,0.00022123786,0.00006817638,0.00003154782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039712153,0.00008183312,0.00009963671,0.000040780524,0.00010955452,0.000021110398,0.000090995694,0.00007771915,0.000027276634],"category_scores_gemma":[0.00036852955,0.00006069958,0.000043941956,0.000063735206,0.0001419281,0.000014534377,0.000082238905,0.00012769448,3.9211784e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022626945,0.000056311557,0.009748558,0.00001824288,0.000029980882,1.8344093e-7,0.00006266456,4.4672723e-7,0.97464985,0.00001574262,0.0000048934985,0.015186869],"study_design_scores_gemma":[0.00027093902,0.00033375344,0.30085406,0.0000079783795,0.000009880698,0.0000055860546,0.00004253427,0.000018902008,0.6977198,0.000014511039,0.00066522096,0.000056835946],"about_ca_topic_score_codex":0.002987661,"about_ca_topic_score_gemma":0.0059665684,"teacher_disagreement_score":0.2911055,"about_ca_system_score_codex":0.0000060815696,"about_ca_system_score_gemma":0.000034635843,"threshold_uncertainty_score":0.45164695},"labels":[],"label_agreement":null},{"id":"W2117475938","doi":"10.1128/iai.01280-12","title":"Toll-Like Receptor 4/Stem Cell Antigen 1 Signaling Promotes Hematopoietic Precursor Cell Commitment to Granulocyte Development during the Granulopoietic Response to Escherichia coli Bacteremia","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health","keywords":"Biology; Bone marrow; Haematopoiesis; Stem cell; Myeloid; Progenitor cell; Downregulation and upregulation; Immunology; Molecular biology; Granulopoiesis; Hematopoietic stem cell; Cancer research; Cell biology","score_opus":0.008879455793590093,"score_gpt":0.21052434535968342,"score_spread":0.20164488956609333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117475938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961002,0.00041796392,0.0002190921,0.000502525,0.0006119964,0.0017496435,0.0000038250005,0.00011705388,0.0002777339],"genre_scores_gemma":[0.9942339,0.00007396488,0.00021553971,0.00025789312,0.000018352608,0.00035572876,0.000028217926,0.00002929043,0.00478713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973599,0.0012258488,0.0005496688,0.00031297054,0.00008189945,0.00046975756],"domain_scores_gemma":[0.998853,0.0002657385,0.00016956826,0.00046022006,0.00016767021,0.000083752886],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00096466206,0.00032189372,0.00031924187,0.00021039393,0.0011749042,0.00013498403,0.00022857024,0.00021436122,0.00071732653],"category_scores_gemma":[0.000047918267,0.00025409154,0.000086201166,0.00032154407,0.000089106135,0.0002104197,0.0002272781,0.00044681862,0.002436757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010168804,0.0001665923,0.0019108012,0.00008970697,0.000055911336,6.218795e-7,0.009239662,0.000015033785,0.9843735,0.0000025210886,0.00074032845,0.002388444],"study_design_scores_gemma":[0.00090094964,0.00032778023,0.12511651,0.00009768322,0.00001938098,0.000018397232,0.0007438168,0.0000030370552,0.82994694,0.000005190946,0.04251844,0.00030187948],"about_ca_topic_score_codex":0.000322335,"about_ca_topic_score_gemma":0.000024941317,"teacher_disagreement_score":0.15442657,"about_ca_system_score_codex":0.0001782507,"about_ca_system_score_gemma":0.000108810025,"threshold_uncertainty_score":0.9999911},"labels":[],"label_agreement":null},{"id":"W2117499201","doi":"10.1128/iai.70.4.1957-1964.2002","title":"Preexisting Inflammation Due to<i>Mycobacterium bovis</i>BCG Infection Differentially Modulates T-Cell Priming against a Replicating or Nonreplicating Immunogen","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Immunogen; Priming (agriculture); Ovalbumin; Biology; T cell; Mycobacterium bovis; Immunology; CD8; Microbiology; Listeria monocytogenes; Cytotoxic T cell; Immune system; Medicine; Mycobacterium tuberculosis; Antibody; In vitro; Tuberculosis; Bacteria","score_opus":0.02362075451712034,"score_gpt":0.23796572139439295,"score_spread":0.2143449668772726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117499201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99270713,0.00048850477,0.0016900639,0.00014832751,0.00077765586,0.0006647437,0.000009863344,0.0004831255,0.0030305614],"genre_scores_gemma":[0.9965923,0.00049359235,0.00025774125,0.0001573049,0.0001194992,0.00013239612,0.00015630785,0.00004938366,0.0020414975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997377,0.0005435473,0.0008168729,0.0006065405,0.00006581241,0.00059025903],"domain_scores_gemma":[0.998169,0.00027655263,0.00052023376,0.0007606979,0.00021054533,0.000062957944],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0005605847,0.00042073734,0.00048557407,0.00029956354,0.0013739073,0.00014569743,0.00020320427,0.00044148407,0.00037920228],"category_scores_gemma":[0.00048203004,0.00035471751,0.00013726231,0.0004220275,0.00016250431,0.00038995317,0.00038528975,0.0008089136,0.00039641364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011831897,0.00023243482,0.008186565,0.00010193259,0.00010840371,0.0000025310255,0.0014255702,0.000028176608,0.91513693,0.000020738114,0.00011837717,0.07452003],"study_design_scores_gemma":[0.0023046117,0.0007977528,0.03710283,0.00023465297,0.00012618634,0.00057143683,0.000221821,0.00077508716,0.93699914,0.00005084935,0.019981315,0.0008343181],"about_ca_topic_score_codex":0.0019456465,"about_ca_topic_score_gemma":0.00017930998,"teacher_disagreement_score":0.07368571,"about_ca_system_score_codex":0.00013076825,"about_ca_system_score_gemma":0.000030764808,"threshold_uncertainty_score":0.99992615},"labels":[],"label_agreement":null},{"id":"W2117698323","doi":"10.1128/iai.73.12.7844-7852.2005","title":"<i>Helicobacter pylori</i> Activates Myosin Light-Chain Kinase To Disrupt Claudin-4 and Claudin-5 and Increase Epithelial Permeability","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; University of Calgary","funders":"","keywords":"Myosin light-chain kinase; Tight junction; Biology; Claudin; Helicobacter pylori; Occludin; Paracellular transport; CagA; Cell biology; Myosin; Microbiology; Permeability (electromagnetism); Virulence; Biochemistry","score_opus":0.012143027352905247,"score_gpt":0.26118222768420396,"score_spread":0.24903920033129873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117698323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98786247,0.00030217023,0.000054101278,0.010262837,0.00020256524,0.0005295288,0.0000332809,0.00011381033,0.00063924247],"genre_scores_gemma":[0.9960021,0.0007361789,0.00018446932,0.0025286225,0.00026768376,0.000046379162,0.00001801194,0.000027853466,0.00018873264],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982732,0.00029110358,0.00039623133,0.0004722934,0.00014862472,0.00041855156],"domain_scores_gemma":[0.998765,0.00015459549,0.00010024438,0.00037442346,0.0001776666,0.00042807157],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00055032136,0.0003483217,0.0004918935,0.00021452202,0.00046114394,0.000063534055,0.00004879405,0.0002199701,0.000067706074],"category_scores_gemma":[0.00055874576,0.00029916462,0.00006680078,0.00021991205,0.00032376192,0.00030595978,0.0002651286,0.00068376504,0.00003321961],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001219886,0.00048356346,0.83949757,0.00008434924,0.00025854088,0.0000103943,0.0023013551,0.0000012723686,0.11169462,0.000024593344,0.0005099955,0.04391389],"study_design_scores_gemma":[0.0024439194,0.0010097165,0.94310033,0.000093603485,0.00017428208,0.00022679378,0.0002034404,0.000042688047,0.012391582,0.000034373254,0.04003944,0.00023982285],"about_ca_topic_score_codex":0.0010861984,"about_ca_topic_score_gemma":0.0006564434,"teacher_disagreement_score":0.1036028,"about_ca_system_score_codex":0.00013517769,"about_ca_system_score_gemma":0.00003235795,"threshold_uncertainty_score":0.99994606},"labels":[],"label_agreement":null},{"id":"W2117992130","doi":"10.1128/iai.70.7.3673-3680.2002","title":"Strain-Dependent Induction of Enterocyte Apoptosis by<i>Giardia lamblia</i>Disrupts Epithelial Barrier Function in a Caspase-3-Dependent Manner","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":231,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; Crohn's and Colitis Foundation of Canada; Natural Sciences and Engineering Research Council of Canada; Crohn's and Colitis Foundation","keywords":"Enterocyte; Giardia lamblia; Apoptosis; Biology; Barrier function; Tight junction; Cell biology; Caspase 3; Molecular biology; Microbiology; Biochemistry; Small intestine; Programmed cell death","score_opus":0.01537366547775102,"score_gpt":0.23780312836460019,"score_spread":0.22242946288684917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117992130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940428,0.00047985368,0.00068866264,0.000053714004,0.0017182233,0.0002616307,0.00019927416,0.000059487375,0.0024963322],"genre_scores_gemma":[0.9976989,0.0009333744,0.0000067741494,0.00008645135,0.000040896928,0.00004552881,0.000101391415,0.000014954762,0.0010717534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861133,0.00036195217,0.00042279804,0.00025207133,0.00006309734,0.0002887778],"domain_scores_gemma":[0.99930733,0.00014116059,0.00015896105,0.00024987131,0.00010202861,0.00004064985],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00034026155,0.00020910105,0.00028160508,0.00036534123,0.00030659256,0.000026226697,0.000061214014,0.00033720385,0.0012945279],"category_scores_gemma":[0.00017085452,0.00020785612,0.00009141033,0.00025411783,0.00016548915,0.00024484703,0.000058445232,0.0005278623,0.00017952209],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024731187,0.0014418398,0.062544584,0.00005678521,0.00027614133,0.0000032022015,0.0009937844,0.00009433769,0.9157078,0.0006608515,0.0026450458,0.015328315],"study_design_scores_gemma":[0.008959145,0.0017424028,0.4686129,0.00017621575,0.00034463045,0.0004336645,0.0011160895,0.000106673935,0.49699005,0.00032290738,0.020285461,0.0009098617],"about_ca_topic_score_codex":0.0031416963,"about_ca_topic_score_gemma":0.00050996215,"teacher_disagreement_score":0.41871774,"about_ca_system_score_codex":0.0000942776,"about_ca_system_score_gemma":0.000017072,"threshold_uncertainty_score":0.9996184},"labels":[],"label_agreement":null},{"id":"W2118037244","doi":"10.1128/iai.72.8.4772-4783.2004","title":"<i>Anaplasma phagocytophilum</i>Utilizes Multiple Host Evasion Mechanisms To Thwart NADPH Oxidase-Mediated Killing during Neutrophil Infection","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; Ohio State University; Montana State University; National Institute of Allergy and Infectious Diseases; Johns Hopkins University; National Institutes of Health; Universiteit van Amsterdam; Burroughs Wellcome Fund","keywords":"Anaplasma phagocytophilum; NADPH oxidase; Biology; Superoxide; Microbiology; Zymosan; Myeloperoxidase; Reactive oxygen species; Biochemistry; Immunology; Enzyme; Inflammation; Antibody; Borrelia burgdorferi","score_opus":0.01272403263814615,"score_gpt":0.23036877745885526,"score_spread":0.2176447448207091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118037244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944785,0.0003787889,0.0015783275,0.00017672358,0.0017752964,0.00061890605,0.000052971795,0.0007297295,0.00021075636],"genre_scores_gemma":[0.99856514,0.0005831735,0.000050687024,0.000315991,0.00007765121,0.00009600262,0.00016477582,0.000051105104,0.000095467156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803144,0.00034747995,0.0004619323,0.0005104383,0.00008906673,0.00055965467],"domain_scores_gemma":[0.99885225,0.00017422289,0.00018504413,0.000443077,0.00020588646,0.00013954008],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002982368,0.0004167499,0.0004083938,0.00046498244,0.0012745863,0.000082123675,0.00012065382,0.00040120175,0.00024439755],"category_scores_gemma":[0.000492863,0.00042406857,0.00017926388,0.0005665288,0.00016074191,0.0004318366,0.0001925493,0.0006671083,0.0006741386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035797173,0.00055879995,0.025359757,0.00005711998,0.00017311108,0.00000804733,0.00034125766,0.00049810676,0.9716,0.00021951564,0.000049300223,0.0007770012],"study_design_scores_gemma":[0.004396801,0.00079597614,0.46107793,0.00012643872,0.00009639368,0.00032128958,0.000086362794,0.000018308427,0.52914643,0.00034774287,0.0030614454,0.00052485947],"about_ca_topic_score_codex":0.009446408,"about_ca_topic_score_gemma":0.0024455294,"teacher_disagreement_score":0.44245356,"about_ca_system_score_codex":0.00033775298,"about_ca_system_score_gemma":0.00010047633,"threshold_uncertainty_score":0.9998211},"labels":[],"label_agreement":null},{"id":"W2118283102","doi":"10.1128/iai.00759-10","title":"Nod1 and Nod2 Regulation of Inflammation in the <i>Salmonella</i> Colitis Model","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation; Howard Hughes Medical Institute","keywords":"NOD1; NOD2; Colitis; Inflammation; Salmonella; Biology; Immunology; Microbiology; Immune system; Innate immune system; Bacteria; Genetics","score_opus":0.012133740819509171,"score_gpt":0.2600967592577136,"score_spread":0.24796301843820442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118283102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931292,0.000014796073,0.00019997962,0.00014955612,0.00005494643,0.00020292851,0.0000016246626,0.000013151413,0.006233833],"genre_scores_gemma":[0.9996605,0.000085131695,0.00008488742,0.000038112514,0.000023205876,0.000013470953,0.0000120861105,0.0000037014856,0.0000788879],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996523,0.000040323874,0.00013063154,0.000059633825,0.000061107494,0.000055950182],"domain_scores_gemma":[0.9997108,0.00003138384,0.000051513023,0.0001291897,0.00005764289,0.0000194895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000225926,0.000054268006,0.00008673363,0.00007918192,0.00010420226,0.000010847085,0.000010915441,0.00006494435,0.00001674489],"category_scores_gemma":[0.000048958063,0.000039338673,0.000018448252,0.00011443465,0.00007064317,0.00010185304,0.00001209218,0.00017868259,0.0000017861244],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018239784,0.00044218617,0.7693038,0.00012782661,0.000049354585,0.0000016678434,0.0025507752,0.00010890641,0.18491966,0.0068489113,0.00006482528,0.0353997],"study_design_scores_gemma":[0.00085882575,0.00008670965,0.98323876,0.00002165439,0.000029298037,0.00008494672,0.000054592045,0.0072715157,0.0070179156,0.0010161975,0.00028192022,0.000037674818],"about_ca_topic_score_codex":0.0013296021,"about_ca_topic_score_gemma":0.00048655632,"teacher_disagreement_score":0.21393496,"about_ca_system_score_codex":0.000011511979,"about_ca_system_score_gemma":0.00001776967,"threshold_uncertainty_score":0.20099695},"labels":[],"label_agreement":null},{"id":"W2118531873","doi":"10.1128/iai.00016-10","title":"Identification and Characterization of a Glycosyltransferase Involved in <i>Acinetobacter baumannii</i> Lipopolysaccharide Core Biosynthesis","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Research Council Canada","keywords":"Acinetobacter baumannii; Biology; Glycosyltransferase; Microbiology; Lipid A; Monoclonal antibody; Complementation; Lipopolysaccharide; Epitope; Mutant; Bacteria; Antibody; Gene; Biochemistry; Immunology; Genetics; Pseudomonas aeruginosa","score_opus":0.00977818102609948,"score_gpt":0.23908681866599882,"score_spread":0.22930863763989934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118531873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992072,0.000018375136,0.00038905928,0.000036745787,0.00015401928,0.00013429632,0.000018336823,0.000008096376,0.000033879056],"genre_scores_gemma":[0.99920475,0.0005344442,0.00003952895,0.000041076797,0.000035804973,0.000004878929,0.00009295127,0.00000900821,0.000037541213],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99945015,0.000045660723,0.00022103281,0.00015582859,0.00004328861,0.0000840484],"domain_scores_gemma":[0.99960744,0.000011891727,0.00008683084,0.00020187363,0.000059953752,0.000032034208],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020011306,0.00009085001,0.00011007027,0.000071216986,0.000055009932,0.000024889137,0.00004334532,0.00012902304,0.000016651153],"category_scores_gemma":[0.00008046775,0.000091418355,0.000022967963,0.00006546199,0.00011252638,0.000018312601,0.000028275517,0.00011469407,9.663484e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055749933,0.000042012914,0.2584257,0.000025148525,0.0000072856337,1.2223941e-7,0.00004148693,6.2029876e-8,0.73992276,0.000057043835,0.0000025412523,0.0014200449],"study_design_scores_gemma":[0.00016690207,0.00003294825,0.5069871,0.000012044899,0.0000059873914,0.0000032540333,0.000013512235,0.000018811308,0.49240753,0.000021789801,0.0002740103,0.000056114586],"about_ca_topic_score_codex":0.00025048477,"about_ca_topic_score_gemma":0.00077703485,"teacher_disagreement_score":0.24856138,"about_ca_system_score_codex":0.000004284978,"about_ca_system_score_gemma":0.000016101298,"threshold_uncertainty_score":0.37279323},"labels":[],"label_agreement":null},{"id":"W2118549950","doi":"10.1128/iai.72.5.2850-2857.2004","title":"Importance of the Ornibactin and Pyochelin Siderophore Transport Systems in <i>Burkholderia cenocepacia</i> Lung Infections","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Cystic Fibrosis Foundation","keywords":"Siderophore; Burkholderia cenocepacia; Biology; Microbiology; Bacterial outer membrane; Virulence; Mutant; Burkholderia cepacia complex; Salicylic acid; Burkholderia; Bacteria; Biochemistry; Escherichia coli; Gene","score_opus":0.013469797127998324,"score_gpt":0.283434752598777,"score_spread":0.26996495547077864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118549950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99713135,0.0012630752,0.0001678539,0.00020425167,0.00015301556,0.00046507563,0.000010299236,0.000027586171,0.0005775023],"genre_scores_gemma":[0.9990357,0.00076654035,0.000052700372,0.00005024838,0.000024072144,0.000024076026,0.000005430368,0.0000100664865,0.00003116602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992002,0.00007721017,0.00028117077,0.00013742033,0.00015042545,0.00015354087],"domain_scores_gemma":[0.99946016,0.000068248235,0.000087755354,0.0002260211,0.00008730671,0.000070530245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030638612,0.00010447697,0.00022074739,0.00010227707,0.00013749258,0.000013999648,0.000032437347,0.00006444753,0.000017682089],"category_scores_gemma":[0.0002507509,0.00007787419,0.0000442484,0.0003834508,0.00019652887,0.0001276124,0.000027970278,0.00037103082,9.514076e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008267331,0.00020573202,0.93263584,0.00035284343,0.000025582807,0.0000036281508,0.00036027198,0.00021574668,0.06545551,0.00017463823,0.000017436865,0.0004700878],"study_design_scores_gemma":[0.0014426012,0.00018851046,0.98936975,0.00034805213,0.000027810589,0.00016200556,0.00022179152,0.00007128454,0.0066934046,0.00016386446,0.0012329916,0.00007790769],"about_ca_topic_score_codex":0.0053657503,"about_ca_topic_score_gemma":0.0018145208,"teacher_disagreement_score":0.058762103,"about_ca_system_score_codex":0.00009654591,"about_ca_system_score_gemma":0.00010770823,"threshold_uncertainty_score":0.81114453},"labels":[],"label_agreement":null},{"id":"W2118647439","doi":"10.1128/iai.73.3.1568-1577.2005","title":"A Live and Inactivated<i>Chlamydia trachomatis</i>Mouse Pneumonitis Strain Induces the Maturation of Dendritic Cells That Are Phenotypically and Immunologically Distinct","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Chlamydia trachomatis; CD80; CD86; Immune system; Microbiology; Dendritic cell; MHC class II; Immunology; CD40; Virology; Major histocompatibility complex; T cell; Cytotoxic T cell; In vitro","score_opus":0.014678503161850265,"score_gpt":0.22887650693233377,"score_spread":0.2141980037704835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118647439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99274266,0.006134455,0.00007946096,0.00030182034,0.00015690179,0.00030701817,0.000050619077,0.000062686144,0.00016436676],"genre_scores_gemma":[0.99532354,0.004125538,0.000039627976,0.00015283827,0.000015859407,0.000024695912,0.00002812532,0.000014074485,0.00027568292],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983988,0.0007850057,0.0003353766,0.00020528061,0.000043269098,0.00023228493],"domain_scores_gemma":[0.99890196,0.0005034752,0.00025975064,0.00023154164,0.0000833288,0.000019932768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037003602,0.00022952251,0.00032014432,0.00009992192,0.0006219093,0.00007871771,0.000108847424,0.00029131462,0.00016113021],"category_scores_gemma":[0.00014994518,0.000164564,0.000055808436,0.00010692746,0.00073342846,0.00034127917,0.00009618562,0.0006069185,0.000015177576],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005390337,0.00019630436,0.007901728,0.000033404747,0.00015698622,8.3189116e-7,0.0017773925,8.241444e-7,0.9302257,0.0002090338,0.00002453842,0.058934268],"study_design_scores_gemma":[0.000970099,0.00024898106,0.765569,0.00006847055,0.000043547723,0.00018659896,0.0010948142,0.000004451342,0.23034543,0.00011769239,0.0011761612,0.00017479784],"about_ca_topic_score_codex":0.0005682241,"about_ca_topic_score_gemma":0.00011782738,"teacher_disagreement_score":0.75766724,"about_ca_system_score_codex":0.000027897557,"about_ca_system_score_gemma":0.000026770971,"threshold_uncertainty_score":0.67107254},"labels":[],"label_agreement":null},{"id":"W2118648892","doi":"10.1128/iai.72.2.1162-1165.2004","title":"Evidence for Acquisition of the Lipooligosaccharide Biosynthesis Locus in<i>Campylobacter jejuni</i>GB11, a Strain Isolated from a Patient with Guillain-Barre Syndrome, by Horizontal Exchange","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Biology; Microbiology; Guillain-Barre syndrome; Strain (injury); Bacteria; Immunology; Genetics","score_opus":0.015587297779618724,"score_gpt":0.2379730687709116,"score_spread":0.22238577099129286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118648892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758255,0.00058135175,0.00030352492,0.00063688343,0.00011508589,0.0005678731,0.00012992178,0.000026637541,0.000056182824],"genre_scores_gemma":[0.99901533,0.0004077272,0.000038297854,0.00044198058,0.000012366453,0.000036627556,0.000024887899,0.000013032509,0.000009742262],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992543,0.00008504852,0.0002160359,0.0001682312,0.000121483805,0.00015494172],"domain_scores_gemma":[0.9994437,0.00007836221,0.00011553467,0.0002308748,0.000075557386,0.00005594003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101055935,0.00014000818,0.00021060332,0.000062138904,0.00012134,0.00001872262,0.000051095947,0.000083258616,0.000062365405],"category_scores_gemma":[0.00011596264,0.000095936564,0.00006999297,0.00024219077,0.00009857312,0.00013993323,0.000039159335,0.00015900283,9.1581427e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068736016,0.0027982255,0.114591904,0.0007073287,0.00031260483,0.00005588561,0.0059329164,0.00011761264,0.79576284,0.00005759817,0.000714025,0.07207546],"study_design_scores_gemma":[0.011096564,0.011912129,0.91204447,0.004081985,0.00031491177,0.00038001226,0.0018501591,0.0002902897,0.054232895,0.0006156843,0.0024983871,0.0006825273],"about_ca_topic_score_codex":0.007780183,"about_ca_topic_score_gemma":0.0019603774,"teacher_disagreement_score":0.79745257,"about_ca_system_score_codex":0.00007717991,"about_ca_system_score_gemma":0.0000486374,"threshold_uncertainty_score":0.9988271},"labels":[],"label_agreement":null},{"id":"W2118740636","doi":"10.1128/iai.00824-10","title":"Region of Difference 2 Contributes to Virulence of<i>Mycobacterium tuberculosis</i>","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"European Maritime and Fisheries Fund; Canadian Institutes of Health Research","keywords":"Virulence; Biology; Mycobacterium tuberculosis; Microbiology; Tuberculosis; Mycobacterium; Virology; Bacteria; Genetics; Gene","score_opus":0.02082230014838355,"score_gpt":0.3082576285866498,"score_spread":0.28743532843826625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118740636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969678,0.00008880224,0.00044353277,0.0012517376,0.00018161282,0.0001824458,0.0000058799023,0.00001919693,0.00085899176],"genre_scores_gemma":[0.9987991,0.0006028106,0.00007252047,0.000406561,0.000028610084,0.0000112123025,0.0000075296525,0.000004449465,0.000067248446],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99931544,0.00011665585,0.00023743727,0.00010809937,0.00007475786,0.00014762094],"domain_scores_gemma":[0.9991406,0.00020512687,0.00006483599,0.00025772766,0.00021916786,0.00011249606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034871008,0.00007638636,0.0002904792,0.00013078585,0.000053733893,0.0000045076736,0.00004363033,0.00010470564,0.000035182205],"category_scores_gemma":[0.0014204759,0.000060839928,0.00005691745,0.0001881236,0.00017845283,0.000045591507,0.00006433992,0.0003376643,0.000005726704],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014912363,0.000098419514,0.43970025,0.0000743037,0.000029565763,6.114524e-7,0.000047888592,2.443209e-7,0.55289364,0.00044309627,0.00029363704,0.00626919],"study_design_scores_gemma":[0.00040192035,0.00038918288,0.9107955,0.00006313038,0.000024084486,0.0000542149,0.000013313968,0.00003604434,0.084418304,0.00020544582,0.0035533973,0.00004545642],"about_ca_topic_score_codex":0.0026327933,"about_ca_topic_score_gemma":0.00019239058,"teacher_disagreement_score":0.47109523,"about_ca_system_score_codex":0.000011730638,"about_ca_system_score_gemma":0.00003227489,"threshold_uncertainty_score":0.39800137},"labels":[],"label_agreement":null},{"id":"W2118810569","doi":"10.1128/iai.68.6.3108-3115.2000","title":"Enterohemorrhagic<i>Escherichia coli</i>Induces Apoptosis Which Augments Bacterial Binding and Phosphatidylethanolamine Exposure on the Plasma Membrane Outer Leaflet","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre; Toronto Metropolitan University; Hospital for Sick Children","funders":"Medical Research Council; Crohn's and Colitis Foundation of Canada; Medical Research Council Canada; Crohn's and Colitis Foundation","keywords":"Phosphatidylserine; Phosphatidylethanolamine; Biology; Apoptosis; Microbiology; Bacterial outer membrane; Escherichia coli; Programmed cell death; Cell; Phospholipid; Biochemistry; Phosphatidylcholine; Membrane; Gene","score_opus":0.015327358441717044,"score_gpt":0.24764868865736364,"score_spread":0.2323213302156466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118810569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963966,0.00011358473,0.000004538016,0.00044155447,0.00019967502,0.0002572143,0.000017638758,0.000019927433,0.0025492685],"genre_scores_gemma":[0.9957793,0.0025188178,0.000033329572,0.00032039545,0.00013928591,0.000058916645,0.000048609094,0.000016245302,0.0010851455],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896276,0.00024282478,0.00016526355,0.00025303973,0.00013734939,0.0002387858],"domain_scores_gemma":[0.99950874,0.000052641706,0.00005585659,0.00024560568,0.00007005328,0.00006710679],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003178824,0.00019437127,0.00015713554,0.000037338414,0.00046132747,0.00011410456,0.00010119046,0.00012456377,0.00023342148],"category_scores_gemma":[0.00013866312,0.00014380309,0.000040178358,0.00015123951,0.0001235146,0.000016702885,0.00013188095,0.0002578256,0.000013847425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032309387,0.00012440296,0.004994843,0.000027577718,0.00013030096,4.4032623e-7,0.00019929057,0.0000028695863,0.9875427,0.000008751218,0.0004003365,0.0062453756],"study_design_scores_gemma":[0.0015120854,0.0010179444,0.046042994,0.000043359112,0.00003024382,0.000010182407,0.00014300081,0.000053478547,0.9211071,0.000005681891,0.029764807,0.0002690938],"about_ca_topic_score_codex":0.00018260576,"about_ca_topic_score_gemma":0.00008609597,"teacher_disagreement_score":0.06643559,"about_ca_system_score_codex":0.000015273548,"about_ca_system_score_gemma":0.000022362858,"threshold_uncertainty_score":0.58641195},"labels":[],"label_agreement":null},{"id":"W2118851707","doi":"10.1128/iai.69.8.5138-5150.2001","title":"Enhanced Susceptibility to Pulmonary Infection with<i>Burkholderia cepacia</i>in<i>Cftr</i><sup>−/−</sup>Mice","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's College Hospital; Sunnybrook Health Science Centre; University of Toronto; Toronto General Hospital; University Health Network; Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health","keywords":"Burkholderia; Biology; Microbiology; Burkholderia cepacia complex; Cystic fibrosis; Pulmonary infection; Pseudomonas aeruginosa; Virology; Bacteria; Medicine; Genetics; Internal medicine","score_opus":0.01611517619712687,"score_gpt":0.29914559077598685,"score_spread":0.28303041457885997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118851707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98942226,0.000111575086,0.0027895393,0.00030240233,0.000098489305,0.000798817,0.000004033125,0.00015438985,0.006318479],"genre_scores_gemma":[0.99811333,0.00061363884,0.00032698893,0.00023636756,0.00009854466,0.00008559561,0.000031677853,0.000024577073,0.00046928198],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983134,0.00024739234,0.0003237196,0.00039374863,0.00029873918,0.00042297688],"domain_scores_gemma":[0.9988514,0.00014734735,0.00006268842,0.0004381722,0.00022728182,0.00027311884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059481704,0.00022903645,0.00034475565,0.00032204553,0.00023188107,0.00005496231,0.000055749813,0.00011699855,0.00032061417],"category_scores_gemma":[0.00055136636,0.0002023995,0.00006322637,0.0009738098,0.00016478584,0.00041944257,0.00008940852,0.0005670812,0.00007920193],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024438216,0.0009450037,0.45709437,0.00021844734,0.000046634057,0.0000329762,0.00077399163,0.0006839512,0.5037613,0.000025430945,0.000127874,0.033846192],"study_design_scores_gemma":[0.0015865132,0.001443855,0.95171607,0.00023954161,0.000028125887,0.00029892748,0.00021935801,0.0008731233,0.028685397,0.00012006138,0.014524476,0.00026453892],"about_ca_topic_score_codex":0.0070216046,"about_ca_topic_score_gemma":0.0023076308,"teacher_disagreement_score":0.49462172,"about_ca_system_score_codex":0.0002595484,"about_ca_system_score_gemma":0.00008920008,"threshold_uncertainty_score":0.9995907},"labels":[],"label_agreement":null},{"id":"W2119250845","doi":"10.1128/iai.05303-11","title":"The Phosphoinositide-3-Kinase–Akt Signaling Pathway Is Important for Staphylococcus aureus Internalization by Endothelial Cells","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Internalization; Biology; Staphylococcus aureus; Protein kinase B; Phosphoinositide 3-kinase; Signal transduction; PI3K/AKT/mTOR pathway; Cell biology; Microbiology; Biochemistry; Bacteria; Genetics; Cell","score_opus":0.018840790584691052,"score_gpt":0.25274561412484053,"score_spread":0.2339048235401495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119250845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98059326,0.00071551144,0.015890628,0.000071925584,0.0005269391,0.000790486,0.00017200226,0.00008636957,0.0011528461],"genre_scores_gemma":[0.99775195,0.0006072312,0.00021433835,0.0005703633,0.00008818985,0.0000542366,0.00003085734,0.000030982508,0.0006518351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886847,0.000074378906,0.000419098,0.00021438133,0.00014218388,0.00028150348],"domain_scores_gemma":[0.99898684,0.00014305016,0.00023722986,0.00029735497,0.00023301676,0.000102506354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043046978,0.00019527995,0.00022267086,0.000061733415,0.0005357364,0.00006601804,0.00008880272,0.00011555335,0.00014194587],"category_scores_gemma":[0.00012589713,0.0001477521,0.00014466945,0.00013812908,0.00017484017,0.00011520912,0.00004526386,0.00025307175,0.000009379246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009282172,0.0002173816,0.022844933,0.00008567419,0.00012263477,0.0000050112403,0.001176544,6.504588e-7,0.96085626,0.00044174638,0.0063652378,0.0069557014],"study_design_scores_gemma":[0.0010950005,0.00043680932,0.0027794868,0.000089244415,0.00006477071,0.000006729387,0.00017424929,0.000078077945,0.9290802,0.0004501395,0.0655771,0.00016821454],"about_ca_topic_score_codex":0.0015731831,"about_ca_topic_score_gemma":0.00009840869,"teacher_disagreement_score":0.05921186,"about_ca_system_score_codex":0.000080596954,"about_ca_system_score_gemma":0.00007726599,"threshold_uncertainty_score":0.6025156},"labels":[],"label_agreement":null},{"id":"W2119328939","doi":"10.1128/iai.73.4.2559-2563.2005","title":"Nonopsonic Phagocytosis of Erythrocytes Infected with Ring-Stage<i>Plasmodium falciparum</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"Canadian Institutes of Health Research","keywords":"CD36; Biology; Phagocytosis; Scavenger receptor; Effector; Innate immune system; Immunology; Immune system; Receptor; In vitro; Plasmodium falciparum; Immunity; Cell biology; Blockade; Malaria; Endocrinology; Biochemistry","score_opus":0.017564987370552943,"score_gpt":0.2573610009970522,"score_spread":0.23979601362649927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119328939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958806,0.0008748151,0.0001880346,0.00005984805,0.000176043,0.0002578147,0.00004225095,0.0001345815,0.0023860142],"genre_scores_gemma":[0.9990777,0.0001277271,0.00003779477,0.000054960175,0.000019409195,0.000032850083,0.000060952323,0.000013239634,0.0005753712],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999031,0.00022333661,0.00029769068,0.00017875784,0.000038170198,0.00023103645],"domain_scores_gemma":[0.9992314,0.00014257224,0.00018780614,0.00029987417,0.00011125084,0.000027105749],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001737833,0.00017653941,0.0002768186,0.00014900723,0.0002594997,0.000017868506,0.00009116348,0.00010374056,0.00104804],"category_scores_gemma":[0.00005260528,0.00015197854,0.00006342564,0.00018841197,0.00021217314,0.00019891684,0.00009914851,0.00021256169,0.00010608408],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071259233,0.0011662332,0.73171407,0.00023952458,0.00077511417,0.0000011399036,0.00085037417,0.00024092858,0.25111428,0.00088934577,0.0014153477,0.01088102],"study_design_scores_gemma":[0.0038794216,0.0008313815,0.53030014,0.00012987484,0.00014565456,0.00008056361,0.00021007717,0.000045819943,0.39854383,0.000016142634,0.06547394,0.00034313035],"about_ca_topic_score_codex":0.0011739347,"about_ca_topic_score_gemma":0.00072632043,"teacher_disagreement_score":0.20141394,"about_ca_system_score_codex":0.000053342777,"about_ca_system_score_gemma":0.00005131166,"threshold_uncertainty_score":0.9998651},"labels":[],"label_agreement":null},{"id":"W2119377235","doi":"10.1128/iai.06205-11","title":"Type VI Secretion System-Associated Gene Clusters Contribute to Pathogenesis of Salmonella enterica Serovar Typhimurium","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Safari Club International Foundation","keywords":"Virulence; Biology; Salmonella enterica; Pathogenicity island; Type VI secretion system; Microbiology; Salmonella; Secretion; Gene; Type three secretion system; Virulence factor; Pathogen; Genetics; Cell biology; Bacteria","score_opus":0.013361212966227259,"score_gpt":0.26365127874685546,"score_spread":0.2502900657806282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119377235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982403,0.0003213835,0.0006387013,0.000034184857,0.0003099052,0.00018541314,0.000043025677,0.000017956494,0.00020915107],"genre_scores_gemma":[0.99915904,0.000425873,0.000050143128,0.000048897055,0.0000792917,0.000013282418,0.00013138054,0.000010511011,0.00008156373],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922365,0.00022537624,0.00015550204,0.00010949133,0.00008170298,0.0002043017],"domain_scores_gemma":[0.9994241,0.0000132959,0.00007912681,0.00017231055,0.00022117232,0.000090002475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036658387,0.00009947799,0.00015141178,0.000051183764,0.00011948744,0.000012581892,0.000047211804,0.0000954529,0.00000785321],"category_scores_gemma":[0.00021500638,0.00009447353,0.00004374269,0.00013885008,0.000040746756,0.000007556984,0.00015988665,0.00005784513,0.000008929224],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015256988,0.00007057211,0.040138967,0.000041175288,0.00010134664,1.9019825e-7,0.000088385605,0.000005210038,0.9588188,0.0000032105388,0.00020544446,0.00037413894],"study_design_scores_gemma":[0.0006111537,0.0007071813,0.70727867,0.000035657282,0.000039180795,0.000013593745,0.0001274271,0.00004215227,0.28609726,0.0000010637214,0.004882036,0.0001646187],"about_ca_topic_score_codex":0.0003172177,"about_ca_topic_score_gemma":0.000028999426,"teacher_disagreement_score":0.67272156,"about_ca_system_score_codex":0.00004617012,"about_ca_system_score_gemma":0.000019353736,"threshold_uncertainty_score":0.38525185},"labels":[],"label_agreement":null},{"id":"W2119399502","doi":"10.1128/iai.68.10.5778-5784.2000","title":"Peptide Mimic of Phosphorylcholine, a Dominant Epitope Found on<i>Streptococcus pneumoniae</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Phosphorylcholine; Streptococcus pneumoniae; Epitope; Biology; Microbiology; Peptide; Virology; Immunology; Antibody; Biochemistry; Antibiotics","score_opus":0.019795101209515494,"score_gpt":0.30519734246504215,"score_spread":0.28540224125552666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119399502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.973258,0.00030245262,0.0000032540686,0.00040907788,0.00008106839,0.00026861834,0.000013377078,0.000022814807,0.025641311],"genre_scores_gemma":[0.98873967,0.0031607503,0.000024058736,0.00031947804,0.000079585894,0.000017684955,0.000017066206,0.000010932718,0.007630799],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99912375,0.00008007983,0.00024797415,0.0001548916,0.00019352729,0.00019974707],"domain_scores_gemma":[0.9994003,0.00010109624,0.00004886194,0.00023804323,0.00008761898,0.0001240371],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021218257,0.00013368033,0.00026220435,0.00009221232,0.00016512918,0.000014956452,0.000049574683,0.00007233111,0.0013490068],"category_scores_gemma":[0.00005183268,0.000102527665,0.00011036362,0.00017217034,0.00018178347,0.00006132148,0.00003106316,0.00036947356,0.00014685122],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033449514,0.0019357593,0.36604908,0.00043498882,0.000266898,0.000055028235,0.0007938439,0.00002729157,0.17765312,0.00051022193,0.0040015117,0.4449273],"study_design_scores_gemma":[0.0016812424,0.0013651003,0.7666093,0.00018863837,0.00004391107,0.00014706004,0.000037523034,0.0001605811,0.043348514,0.00016133102,0.18609129,0.00016552405],"about_ca_topic_score_codex":0.0029232665,"about_ca_topic_score_gemma":0.00007760097,"teacher_disagreement_score":0.44476178,"about_ca_system_score_codex":0.000029393736,"about_ca_system_score_gemma":0.00005034183,"threshold_uncertainty_score":0.9995639},"labels":[],"label_agreement":null},{"id":"W2119441776","doi":"10.1128/iai.71.8.4351-4360.2003","title":"Effect of an Orphan Response Regulator on <i>Streptococcus mutans</i> Sucrose-Dependent Adherence and Cariogenesis","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Center for Research Resources; National Institute of Dental and Craniofacial Research","keywords":"Streptococcus mutans; Glucosyltransferase; Biology; Response regulator; Mutant; Transposable element; Molecular biology; Biochemistry; Gene; Genetics; Bacteria","score_opus":0.013150896460322702,"score_gpt":0.3094071515029255,"score_spread":0.29625625504260283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119441776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881345,0.00019872723,0.0000051834854,0.000005227182,0.00024494174,0.00025997002,0.000045152028,0.000034981596,0.00039239193],"genre_scores_gemma":[0.9992573,0.00006629638,0.0000058945907,0.000018369621,0.0000112749085,0.000018924162,0.000010331252,0.000010545696,0.00060103345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972459,0.0021214816,0.00017361307,0.0002086048,0.00008337593,0.00016700457],"domain_scores_gemma":[0.99917847,0.00029244446,0.00006524939,0.00030193542,0.00007732821,0.000084553154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012785774,0.00013527092,0.00021279501,0.00009983601,0.0002671042,0.000048173028,0.00006165562,0.0001736601,0.00036242625],"category_scores_gemma":[0.000407142,0.00011732677,0.000040449533,0.00016004764,0.00021637582,0.0001259945,0.00004100657,0.00024277544,0.000031906406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002331246,0.00012318844,0.37327665,0.00007224808,0.000038084512,0.000018902465,0.000121372024,0.0000028486418,0.61420965,0.000047012683,0.00005435375,0.009704431],"study_design_scores_gemma":[0.0011323619,0.0021848895,0.43882072,0.000023959818,0.000013876544,0.00013520312,0.000020427113,0.00000315622,0.55618143,0.000013696895,0.0013729399,0.00009734801],"about_ca_topic_score_codex":0.0016517278,"about_ca_topic_score_gemma":0.0007145781,"teacher_disagreement_score":0.06554407,"about_ca_system_score_codex":0.000028773136,"about_ca_system_score_gemma":0.000038912644,"threshold_uncertainty_score":0.47844467},"labels":[],"label_agreement":null},{"id":"W2119911646","doi":"10.1128/iai.69.1.559-563.2001","title":"Tir Tyrosine Phosphorylation and Pedestal Formation Are Delayed in Enteropathogenic <i>Escherichia coli sepZ</i> ::Tn <i>phoA</i> Mutant 30-5-1(3)","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Enteropathogenic Escherichia coli; Phosphorylation; Biology; Mutant; Tyrosine; Tyrosine phosphorylation; Escherichia coli; Microbiology; Virulence; Secretion; Molecular biology; Cell biology; Gene; Biochemistry","score_opus":0.011899309170121622,"score_gpt":0.2545199002370606,"score_spread":0.242620591066939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119911646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691147,0.0010463912,0.0006893323,0.00008232448,0.000072735806,0.00024951066,0.00001100686,0.000021292999,0.00091591786],"genre_scores_gemma":[0.9910983,0.008430697,0.000056579633,0.00017161829,0.00004696312,0.000039099894,0.00006402725,0.000012561477,0.00008017611],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991455,0.00016093378,0.00020507377,0.00018812506,0.00009747807,0.00020288293],"domain_scores_gemma":[0.9995598,0.000015953114,0.00009386364,0.00015902177,0.00010749284,0.000063838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030253993,0.00014556144,0.0001378568,0.000058590424,0.00021863736,0.000053614283,0.00004474662,0.000109667504,0.00001583584],"category_scores_gemma":[0.00012196659,0.00014461236,0.000034387424,0.00018098069,0.000097905366,0.00003334488,0.00014101983,0.00019269274,0.0000039781917],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023820964,0.00013042419,0.12958585,0.000034021232,0.000026673093,0.000003787318,0.00020616573,0.000015142226,0.86601865,0.000010702747,0.00013870982,0.0035916422],"study_design_scores_gemma":[0.0024716828,0.0008746226,0.84328043,0.000058461097,0.000029353028,0.00009951424,0.0004948172,0.002065591,0.12767954,0.00007432243,0.022464875,0.00040677673],"about_ca_topic_score_codex":0.00048515364,"about_ca_topic_score_gemma":0.0011769214,"teacher_disagreement_score":0.7383391,"about_ca_system_score_codex":0.000037284633,"about_ca_system_score_gemma":0.000025733867,"threshold_uncertainty_score":0.5897121},"labels":[],"label_agreement":null},{"id":"W2119957338","doi":"10.1128/iai.72.8.4393-4400.2004","title":"Potential Involvement of Gelatinases and Their Inhibitors in<i>Mannheimia haemolytica</i>Pneumonia in Cattle","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Gelatinases; Gelatinase; Gelatinase A; Matrix metalloproteinase; Biology; Microbiology; Lung; In vitro; Pneumonia; Interleukin 8; Immunology; Inflammation; Medicine; Internal medicine; Biochemistry","score_opus":0.014241370779485677,"score_gpt":0.2552648267113606,"score_spread":0.2410234559318749,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119957338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789244,0.0013312957,0.0000297173,0.00007901593,0.00013246643,0.0001973083,0.000024164152,0.000016925216,0.00029669644],"genre_scores_gemma":[0.99936163,0.00049666216,0.000004519142,0.000028210276,0.000007726235,0.0000147859855,0.00004833987,0.0000060058896,0.000032119624],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926275,0.0001512932,0.00024262101,0.00014280592,0.000017940252,0.00018261404],"domain_scores_gemma":[0.99970454,0.000049100945,0.000052212326,0.00012617605,0.000043507964,0.000024452942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022462034,0.00010952681,0.0001781751,0.00026522888,0.00012547988,0.00001764584,0.000035637913,0.00012531228,0.00013436304],"category_scores_gemma":[0.000060524853,0.00009640872,0.000038412454,0.00021359489,0.00020518221,0.00011400073,0.0001059273,0.00029715017,0.000014957021],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010701692,0.00084970286,0.12505698,0.000081151215,0.00004811371,0.0000031807276,0.0009382034,0.00021195604,0.8655811,0.0004876437,0.0000752248,0.006559714],"study_design_scores_gemma":[0.00334876,0.00035391012,0.7573864,0.00021095134,0.000013717786,0.00008690189,0.000646546,0.000012073371,0.2352404,0.0011098696,0.0013807295,0.00020972031],"about_ca_topic_score_codex":0.01406706,"about_ca_topic_score_gemma":0.002206617,"teacher_disagreement_score":0.63232946,"about_ca_system_score_codex":0.000054699693,"about_ca_system_score_gemma":0.00006239898,"threshold_uncertainty_score":0.99249834},"labels":[],"label_agreement":null},{"id":"W2120425435","doi":"10.1128/iai.01274-07","title":"Fibronectin Binding and Proteolytic Degradation by<i>Leishmania</i>and Effects on Macrophage Activation","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Ohio State University","keywords":"Biology; Leishmania; Amastigote; Fibronectin; Proteases; Microbiology; Laminin; Leishmania major; Extracellular matrix; Extracellular; Leishmania mexicana; Glycoprotein; Kinetoplastida; Parasite hosting; Cell biology; Macrophage; Protease; Biochemistry; In vitro; Enzyme; Immunology","score_opus":0.024034405636498755,"score_gpt":0.2792454713252846,"score_spread":0.2552110656887858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120425435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975781,0.00020272087,0.0001349851,0.0004738841,0.000046658337,0.0006537401,0.00000166966,0.00007081168,0.0008374257],"genre_scores_gemma":[0.99734604,0.0017215444,0.000058495625,0.0001388594,0.000040219402,0.000048922786,0.000019153824,0.000014134079,0.0006126105],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920046,0.00014353146,0.00013109234,0.00019049757,0.00017155186,0.00016285566],"domain_scores_gemma":[0.99942946,0.00022556973,0.000060371796,0.0001284424,0.0000642586,0.00009189605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002283666,0.00013351717,0.00018671954,0.00015983576,0.00060971844,0.00003809297,0.000016356735,0.00007591176,0.0000101413225],"category_scores_gemma":[0.0005083783,0.00011610524,0.000020864289,0.00017373728,0.00012318583,0.00023140248,0.00005445638,0.00033885057,0.0000075549606],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005323756,0.00029876817,0.2509711,0.0007008166,0.0001397396,0.000015687561,0.0010130976,6.881877e-7,0.66883284,0.00007437888,0.0028556993,0.074564815],"study_design_scores_gemma":[0.0017037494,0.0008394327,0.7908383,0.00017938699,0.000022718837,0.00015345345,0.000054215758,0.00010944873,0.20410684,0.000024670768,0.0018471412,0.00012063391],"about_ca_topic_score_codex":0.00058759644,"about_ca_topic_score_gemma":0.000010456511,"teacher_disagreement_score":0.53986716,"about_ca_system_score_codex":0.000079763086,"about_ca_system_score_gemma":0.000019269119,"threshold_uncertainty_score":0.47346345},"labels":[],"label_agreement":null},{"id":"W2120450091","doi":"10.1128/iai.70.11.6319-6329.2002","title":"<i>Candida albicans</i>Killing by RAW 264.7 Mouse Macrophage Cells: Effects of<i>Candida</i>Genotype, Infection Ratios, and Gamma Interferon Treatment","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Biotechnology Research Institute","funders":"","keywords":"Candida albicans; Biology; Macrophage; Microbiology; Virulence; Corpus albicans; Cell culture; Mutant; Molecular biology; In vitro; Gene; Biochemistry","score_opus":0.010061774354565785,"score_gpt":0.236154221930107,"score_spread":0.2260924475755412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120450091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950998,0.002028212,0.0010074844,0.000045773217,0.0002158485,0.0004970742,0.000010746815,0.00007376022,0.0010213054],"genre_scores_gemma":[0.98616713,0.01165743,0.000032721913,0.00011312372,0.000049930706,0.000023153947,0.000026367738,0.000020489262,0.0019096582],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893576,0.00014123933,0.00031504958,0.00026860865,0.00012295974,0.0002163627],"domain_scores_gemma":[0.9992103,0.00013754217,0.00012480452,0.0002914923,0.000089012414,0.00014687135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017293218,0.00023282657,0.0003914457,0.00010727647,0.00025425846,0.000037858295,0.000025859486,0.00014697477,0.00017071885],"category_scores_gemma":[0.00007522465,0.0001976343,0.000096316646,0.00018188677,0.00017937706,0.00017093321,0.00003040835,0.00025218254,0.000012624457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005664117,0.001005151,0.2354187,0.00061655283,0.00018941941,0.0000075021653,0.0010208827,0.0000054165826,0.71033347,0.000019945815,0.00097622233,0.049840305],"study_design_scores_gemma":[0.0048855585,0.0046189018,0.1733279,0.00024796752,0.00033968082,0.000042509437,0.00010251528,0.0007653162,0.80182713,0.000029400442,0.013436386,0.00037671902],"about_ca_topic_score_codex":0.00461434,"about_ca_topic_score_gemma":0.00057344814,"teacher_disagreement_score":0.091493666,"about_ca_system_score_codex":0.00014090499,"about_ca_system_score_gemma":0.000021038062,"threshold_uncertainty_score":0.8059293},"labels":[],"label_agreement":null},{"id":"W2120450733","doi":"10.1128/iai.68.8.4585-4592.2000","title":"Role of Pulmonary Alveolar Macrophages in Defense of the Lung against<i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inhalation and Respiratory Drug Delivery","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Pseudomonas aeruginosa; Microbiology; Lung; Biology; Pseudomonadales; Pulmonary alveolus; Immunology; Pseudomonadaceae; Macrophage; Bacteria; In vitro; Medicine; Biochemistry; Internal medicine","score_opus":0.005598775001489823,"score_gpt":0.22668625885966312,"score_spread":0.22108748385817328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120450733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97406936,0.0010605636,0.0000018330128,0.000044389515,0.000051165403,0.00016630095,0.0000034449406,0.000013653785,0.024589276],"genre_scores_gemma":[0.998726,0.0006516891,0.00000750624,0.0002514123,0.00001729923,0.0000032889443,0.0000036578067,0.0000061661194,0.0003329949],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993585,0.0001510949,0.00023002677,0.000073974996,0.00010376288,0.00008266846],"domain_scores_gemma":[0.9996147,0.000032489635,0.00006991812,0.00019283533,0.000060707975,0.000029358735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019494955,0.00007429756,0.00015653223,0.00008357593,0.000075883436,0.0000033079082,0.00003434106,0.00007362173,0.00020650103],"category_scores_gemma":[0.000030777643,0.000053581152,0.00007754242,0.00022033867,0.00011816769,0.00006501691,0.00002462605,0.00021594578,0.0000050283866],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029263602,0.0005731358,0.72473294,0.0001842988,0.00004986497,0.0000076477345,0.0010780921,0.0002718028,0.20263699,0.00007276423,0.00011865752,0.06998117],"study_design_scores_gemma":[0.000993457,0.000064263906,0.9174255,0.00016438482,0.00003868075,0.000056885296,0.0002025649,0.0016818385,0.07579506,0.00003874402,0.0034485578,0.000090047215],"about_ca_topic_score_codex":0.00043796058,"about_ca_topic_score_gemma":0.00001463336,"teacher_disagreement_score":0.19269258,"about_ca_system_score_codex":0.000020401145,"about_ca_system_score_gemma":0.00003645417,"threshold_uncertainty_score":0.22610416},"labels":[],"label_agreement":null},{"id":"W2120669459","doi":"10.1128/iai.00491-06","title":"Interleukin-10 Inhibits Gram-Negative-Microbe-Specific Human Receptor Activator of NF-κB Ligand-Positive CD4 <sup>+</sup> -Th1-Cell- Associated Alveolar Bone Loss In Vivo","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; National Institutes of Health; University of Rochester","keywords":"Biology; In vivo; Activator (genetics); Receptor; Ligand (biochemistry); Microbiology; Cytokine; Immunology; Molecular biology; Biochemistry","score_opus":0.006302439741555713,"score_gpt":0.22363921863262987,"score_spread":0.21733677889107417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120669459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703586,0.00080477126,0.000051319417,0.000022719838,0.00008231313,0.00022372861,0.00016355551,0.000024396035,0.0015913285],"genre_scores_gemma":[0.998398,0.00032549136,0.000030910833,0.000057246256,0.00009701734,0.00001706806,0.00033951245,0.000024052246,0.0007107132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998675,0.0002928637,0.0003821988,0.00029822206,0.00010961653,0.00024209516],"domain_scores_gemma":[0.99924684,0.000035479774,0.00021090248,0.00025041847,0.00018375617,0.000072581315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024482806,0.00023627111,0.0003055685,0.00013366235,0.00019387597,0.0000429383,0.000084700296,0.00024209268,0.00011404324],"category_scores_gemma":[0.000093617025,0.0002417256,0.00013160026,0.00024188861,0.00021116443,0.000028485067,0.00013239509,0.00023402438,0.000007646637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022211215,0.0008402068,0.027501706,0.000028462788,0.000041206516,0.0000016241518,0.00020525002,0.000020347048,0.9684323,0.000057334764,0.0023318215,0.00031759116],"study_design_scores_gemma":[0.0018863799,0.00025921705,0.05758687,0.00006468516,0.000025033634,0.0000058650076,0.0001232691,0.000006331735,0.932003,0.00012172871,0.0076662945,0.0002512895],"about_ca_topic_score_codex":0.0019839534,"about_ca_topic_score_gemma":0.00022323485,"teacher_disagreement_score":0.0364293,"about_ca_system_score_codex":0.000044084612,"about_ca_system_score_gemma":0.00004768977,"threshold_uncertainty_score":0.98572844},"labels":[],"label_agreement":null},{"id":"W2120681623","doi":"10.1128/iai.68.7.4145-4154.2000","title":"Relationship between the Tsh Autotransporter and Pathogenicity of Avian <i>Escherichia coli</i> and Localization and Analysis of the <i>tsh</i> Genetic Region","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":235,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Biology; Escherichia coli; Pathogenicity; Pathogenicity island; Pathogenic Escherichia coli; Microbiology; Genetics; Genetic analysis; Gene","score_opus":0.016424776709530804,"score_gpt":0.2537824776189644,"score_spread":0.2373577009094336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120681623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977505,0.0009718577,0.0008329086,0.00009315497,0.000009863134,0.00016217343,0.000015911974,0.00000403211,0.00015958292],"genre_scores_gemma":[0.9973682,0.0024161555,0.00003156117,0.000087086155,0.0000126700415,0.0000073548204,0.00001749401,0.0000051101497,0.00005437449],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99927324,0.00025753744,0.00017757001,0.00013200403,0.00007708417,0.000082563434],"domain_scores_gemma":[0.99956185,0.000059444716,0.00008067608,0.00019871905,0.00006732161,0.000031986023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023936603,0.00008466269,0.00014330329,0.000035463796,0.00026939507,0.00001435232,0.000044648863,0.000084651896,0.0000036771057],"category_scores_gemma":[0.00006936367,0.000058059275,0.000043974855,0.00031556364,0.00038016797,0.00000766688,0.000054878547,0.0001163204,4.952392e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025010928,0.000018641958,0.9845944,0.00003117159,0.00012968772,6.443572e-8,0.00023985725,0.000041975927,0.012561617,0.000013617698,0.000012223715,0.002331754],"study_design_scores_gemma":[0.00021602827,0.0000905861,0.99574894,0.0000089274245,0.0002768201,0.0000021439787,0.000032698303,0.00034352782,0.0022563117,0.000065032356,0.000898426,0.00006054849],"about_ca_topic_score_codex":0.00049645535,"about_ca_topic_score_gemma":0.0003317595,"teacher_disagreement_score":0.011154572,"about_ca_system_score_codex":0.00000417512,"about_ca_system_score_gemma":0.000018010895,"threshold_uncertainty_score":0.23675884},"labels":[],"label_agreement":null},{"id":"W2120692021","doi":"10.1128/iai.00446-08","title":"<i>Escherichia coli</i>O157:H7 Survives within Human Macrophages: Global Gene Expression Profile and Involvement of the Shiga Toxins","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Biotechnology Research Institute; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Shiga toxin; Microbiology; Escherichia coli; Virulence; Gene; Pathogen; Operon; Enterobacteriaceae; Downregulation and upregulation; Mutant; Human pathogen; Macrophage; In vitro; Genetics","score_opus":0.02163365918183101,"score_gpt":0.2766216348997924,"score_spread":0.2549879757179614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120692021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978776,0.00080563163,0.00007204151,0.000031713098,0.00008732564,0.00024617897,0.000020274518,0.000010637591,0.0008485903],"genre_scores_gemma":[0.9982188,0.0011606211,0.00020823738,0.000092591705,0.000037181155,0.00002090505,0.000015018449,0.000006886016,0.00023975603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991857,0.00023234477,0.00015925073,0.00016530085,0.00012249625,0.00013494516],"domain_scores_gemma":[0.9995103,0.000010227961,0.00009023233,0.00024374419,0.00009557806,0.00004991116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020756196,0.00011699699,0.000123137,0.000014080327,0.00051264645,0.000014340233,0.000089001005,0.00007920548,0.0000088050665],"category_scores_gemma":[0.00008847396,0.000085778454,0.000041844043,0.00011974266,0.00035723738,0.0000082049855,0.0003881268,0.0001326413,4.7007327e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033392975,0.00009413785,0.16762775,0.000032758042,0.000034466488,3.8081376e-7,0.00023667379,0.0000035633357,0.8316222,0.000024338047,0.00021960033,0.00007075628],"study_design_scores_gemma":[0.00038276645,0.00022995732,0.45689866,0.000016573404,0.000006754941,0.000005432743,0.0001261874,0.000012249691,0.5412698,0.000027067186,0.0009446518,0.00007989566],"about_ca_topic_score_codex":0.00070620683,"about_ca_topic_score_gemma":0.0003518645,"teacher_disagreement_score":0.29035237,"about_ca_system_score_codex":0.000015925365,"about_ca_system_score_gemma":0.00005089558,"threshold_uncertainty_score":0.3942914},"labels":[],"label_agreement":null},{"id":"W2121161379","doi":"10.1128/iai.69.8.5166-5172.2001","title":"Role of Gingipains in Growth of <i>Porphyromonas gingivalis</i> in the Presence of Human Serum Albumin","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Porphyromonas gingivalis; Albumin; Biology; Leupeptin; Microbiology; Serum albumin; Bovine serum albumin; Proteases; Biochemistry; Molecular biology; Protease; Enzyme; Bacteria","score_opus":0.021355786296527433,"score_gpt":0.30319729633102577,"score_spread":0.2818415100344983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121161379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969169,0.00019014248,0.00000423586,0.000030025834,0.000038193542,0.00011071929,0.000014025016,0.0000045079837,0.002691275],"genre_scores_gemma":[0.9997271,0.00012465582,0.000004212713,0.0000138548585,0.000007605802,0.000004040169,0.000007712626,0.0000033322438,0.00010752713],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990415,0.00044931262,0.00024876068,0.000076812175,0.00006986713,0.000113762064],"domain_scores_gemma":[0.9995554,0.00010983297,0.000089631314,0.0001715513,0.000061863735,0.000011734005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068895577,0.00005925721,0.00016033629,0.00014745392,0.000053172374,0.0000080495765,0.00013101834,0.00008004101,0.0001259847],"category_scores_gemma":[0.000108827815,0.000048991962,0.00003876822,0.00034128758,0.00021302624,0.00012448475,0.00006714568,0.00026500665,0.0000022058866],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023316512,0.00015209414,0.6885094,0.00003798575,0.000006500396,0.0000024290703,0.00069025136,0.0000026448786,0.30987486,0.00031943023,0.000032353386,0.00034873176],"study_design_scores_gemma":[0.00034096406,0.00011213909,0.9196925,0.000050554274,0.0000030436402,0.000021581383,0.00034064517,0.000016459457,0.078612156,0.0006092316,0.00016049939,0.000040237504],"about_ca_topic_score_codex":0.02299927,"about_ca_topic_score_gemma":0.006402719,"teacher_disagreement_score":0.23126271,"about_ca_system_score_codex":0.00000974193,"about_ca_system_score_gemma":0.000015477674,"threshold_uncertainty_score":0.9835067},"labels":[],"label_agreement":null},{"id":"W2121524482","doi":"10.1128/iai.70.11.6424-6435.2002","title":"Modulation of Inducible Nitric Oxide Synthase Expression by the Attaching and Effacing Bacterial Pathogen <i>Citrobacter rodentium</i> in Infected Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Citrobacter rodentium; Biology; Nitric oxide synthase; Microbiology; Citrobacter; Intimin; Pathogen; Nitric oxide; Enteropathogenic Escherichia coli; Enterobacteriaceae; Escherichia coli; Gene; Biochemistry","score_opus":0.015116797121547319,"score_gpt":0.2536316014137646,"score_spread":0.2385148042922173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121524482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99884826,0.00051997905,0.00024056039,0.000021973374,0.000036887548,0.00016180029,0.000008128948,0.0000073086812,0.00015511781],"genre_scores_gemma":[0.9988027,0.0010203321,0.000037844027,0.000023772438,0.00002697376,0.000016523534,0.000030474996,0.0000073982987,0.00003394934],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999187,0.00030458003,0.00016308507,0.00014827236,0.000072409544,0.00012468404],"domain_scores_gemma":[0.9996428,0.000046808855,0.00007643963,0.0001525571,0.000052358566,0.000029043962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003120584,0.00009494155,0.00010592234,0.000058616926,0.00016832213,0.000031681015,0.00004468277,0.00008822663,0.000011921262],"category_scores_gemma":[0.0002908813,0.00007553911,0.000024712821,0.00013997282,0.00006695812,0.000020910851,0.00015866323,0.00017545425,5.2742837e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003302802,0.0000659355,0.08657943,0.000021549333,0.000013194,1.6211315e-7,0.000110554065,0.000019178622,0.91161865,6.8677645e-7,0.00007317002,0.0014644854],"study_design_scores_gemma":[0.00077610376,0.000094150106,0.63654745,0.00004108162,0.000010109936,0.000007254241,0.00004886172,0.0007847494,0.3605906,0.00000982277,0.0009714504,0.00011836003],"about_ca_topic_score_codex":0.000778969,"about_ca_topic_score_gemma":0.00008656956,"teacher_disagreement_score":0.551028,"about_ca_system_score_codex":0.000014180823,"about_ca_system_score_gemma":0.0000073866117,"threshold_uncertainty_score":0.30803955},"labels":[],"label_agreement":null},{"id":"W2121534767","doi":"10.1128/iai.01877-14","title":"A Conserved Apicomplexan Microneme Protein Contributes to Toxoplasma gondii Invasion and Virulence","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Microneme; Biology; Toxoplasma gondii; Virulence; Apicomplexa; Rhoptry; Microbiology; Plasmodium (life cycle); Virology; Virulence factor; Complementation; Neospora caninum; Intracellular parasite; Plasmodium falciparum; Genetics; Parasite hosting; Phenotype; Gene; Immunology; Malaria; Antibody","score_opus":0.017415548024064264,"score_gpt":0.25170673749708045,"score_spread":0.2342911894730162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121534767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962744,0.0006954634,0.00048023424,0.00094875006,0.00017186995,0.00056594575,0.000018299812,0.000100860554,0.00074416574],"genre_scores_gemma":[0.99817187,0.00016068852,0.000087958564,0.00030729544,0.000010820433,0.00008676457,0.000021490212,0.000009629532,0.0011434818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986315,0.0005549766,0.00021475305,0.0002533339,0.00003002846,0.00031540656],"domain_scores_gemma":[0.99925804,0.0002873015,0.00006423326,0.0002285126,0.00011325635,0.000048667698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005729321,0.00017380157,0.00027521417,0.00017426246,0.00067141664,0.00005430342,0.000090621514,0.00015791382,0.00009437312],"category_scores_gemma":[0.0008467192,0.00015266068,0.000032987788,0.00016096576,0.00040675048,0.00010944204,0.00034095303,0.00038277832,0.0001774423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017840654,0.00008508234,0.022210123,0.00004845201,0.00008568391,4.5629886e-7,0.00028900857,3.776013e-7,0.96531135,0.0014858298,0.0010508272,0.009254385],"study_design_scores_gemma":[0.0023091782,0.00076728896,0.35545817,0.00012175882,0.00002159292,0.00006398672,0.00015578131,0.000014838613,0.48248395,0.00082936685,0.15750648,0.0002676098],"about_ca_topic_score_codex":0.0017184004,"about_ca_topic_score_gemma":0.00087665254,"teacher_disagreement_score":0.48282743,"about_ca_system_score_codex":0.000037449303,"about_ca_system_score_gemma":0.000025402735,"threshold_uncertainty_score":0.6225322},"labels":[],"label_agreement":null},{"id":"W2121599360","doi":"10.1128/iai.00674-07","title":"Contribution of the<i>stg</i>Fimbrial Operon of<i>Salmonella enterica</i>Serovar Typhi during Interaction with Human Cells","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Pfizer","keywords":"Biology; Operon; Microbiology; Serotype; Salmonella typhi; Salmonella enterica; Virology; Typhoid fever; Salmonella; Gene; Escherichia coli; Genetics; Bacteria","score_opus":0.013645423728142097,"score_gpt":0.2384894269873992,"score_spread":0.2248440032592571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121599360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988735,0.0000279881,0.000024109379,0.000043515443,0.00026742485,0.00013541357,0.0000050616004,0.000019346797,0.000603697],"genre_scores_gemma":[0.99977225,0.000054547138,0.00000613738,0.000033594097,0.000086438085,0.000001319875,0.0000126257655,8.061871e-7,0.00003226519],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992284,0.0001773967,0.00026521806,0.000114965136,0.00007521861,0.00013877559],"domain_scores_gemma":[0.999449,0.00011631505,0.00023495093,0.00006292346,0.00010349375,0.00003329313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040130664,0.00009118424,0.00017613126,0.000014810671,0.00020444562,0.000009250804,0.00007593765,0.000080396545,0.000049060156],"category_scores_gemma":[0.000036784215,0.000034765024,0.00006567347,0.00018285542,0.00012204373,0.00008835832,0.0000584924,0.00015078635,0.0000018128745],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017991103,0.00007599877,0.14083384,0.000005460989,0.000013739815,2.1798499e-7,0.000043360003,0.0000037348677,0.8569589,0.000048878344,0.000009441128,0.001826488],"study_design_scores_gemma":[0.00020355154,0.00024356715,0.6296169,0.000021872358,0.000010736616,0.000012731732,0.000060830913,0.0000027408644,0.36891323,0.00002674331,0.00083813764,0.0000489304],"about_ca_topic_score_codex":0.002135511,"about_ca_topic_score_gemma":0.000501681,"teacher_disagreement_score":0.4887831,"about_ca_system_score_codex":0.000022841105,"about_ca_system_score_gemma":0.0000028279694,"threshold_uncertainty_score":0.3228268},"labels":[],"label_agreement":null},{"id":"W2121620542","doi":"10.1128/iai.70.1.416-418.2002","title":"STK Receptor Tyrosine Kinase Regulates Susceptibility to Infection with<i>Listeria monocytogenes</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Montreal General Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Listeria monocytogenes; Biology; Microbiology; Tyrosine kinase; Listeria; Receptor tyrosine kinase; Receptor Protein-Tyrosine Kinases; Virology; Kinase; Receptor; Bacteria; Genetics","score_opus":0.04682786555975304,"score_gpt":0.2969239365086709,"score_spread":0.25009607094891784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121620542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957569,0.0001920324,0.00007595016,0.0008752865,0.00018900247,0.0006002067,0.0000150172455,0.00017092725,0.0021246506],"genre_scores_gemma":[0.9970129,0.00074064743,0.00010315998,0.00023646155,0.00017380895,0.00004416764,0.000043629534,0.000028386881,0.0016168223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986302,0.00015552042,0.00028172386,0.00035149997,0.00025476818,0.00032625324],"domain_scores_gemma":[0.9987757,0.000053630694,0.00006121678,0.0005213161,0.00028581757,0.00030227876],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003323811,0.00022787489,0.00030503498,0.00022015162,0.00034209766,0.00008626962,0.000046479603,0.00014065372,0.0014175997],"category_scores_gemma":[0.00019296545,0.00019331138,0.00008117235,0.00064588664,0.000133456,0.00015481621,0.000098329336,0.00037403998,0.00020713612],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011649174,0.0011334623,0.18895762,0.00024209428,0.00010093331,0.000009902279,0.0004187896,0.000027740902,0.7617501,0.00003379117,0.0039558127,0.042204846],"study_design_scores_gemma":[0.0024155031,0.0028731825,0.39010504,0.00015964526,0.000090159105,0.00016834037,0.00007270816,0.00030165882,0.5494802,0.0000118513135,0.05395596,0.00036573655],"about_ca_topic_score_codex":0.00344152,"about_ca_topic_score_gemma":0.0005537896,"teacher_disagreement_score":0.21226987,"about_ca_system_score_codex":0.000224043,"about_ca_system_score_gemma":0.000033515124,"threshold_uncertainty_score":0.99949527},"labels":[],"label_agreement":null},{"id":"W2121688787","doi":"10.1128/iai.00778-07","title":"<i>Lactobacillus rhamnosus</i> Strain GG Prevents Enterohemorrhagic <i>Escherichia coli</i> O157:H7-Induced Changes in Epithelial Barrier Function","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":255,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Lactobacillus rhamnosus; Microbiology; Tight junction; Biology; Barrier function; Probiotic; Intestinal mucosa; Escherichia coli; Caco-2; In vitro; Bacteria; Cell biology; Medicine; Biochemistry","score_opus":0.016565088644610586,"score_gpt":0.24322954563117477,"score_spread":0.22666445698656418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121688787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998085,0.00016420736,0.00020290026,0.00009714474,0.0004947173,0.0002714258,0.000046471574,0.000024539542,0.00061356736],"genre_scores_gemma":[0.9970828,0.001045816,0.000026817052,0.001030938,0.00015700534,0.000023509661,0.00014797908,0.000017416813,0.00046768482],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99894017,0.00024593007,0.00020719014,0.00025971633,0.00007558116,0.000271415],"domain_scores_gemma":[0.9995195,0.000009890305,0.00008725443,0.00022979394,0.000052331707,0.000101209574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027978656,0.00018247704,0.00017373358,0.000076323784,0.00025413433,0.000018588944,0.00006633679,0.0002254218,0.00006173238],"category_scores_gemma":[0.000042730848,0.00018486896,0.00005695492,0.00013512139,0.00006806695,0.000012718076,0.00007155889,0.00027798212,0.000012731886],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001468389,0.00014441372,0.022999547,0.000029086394,0.000019588071,0.0000021263443,0.00017016522,0.0000025770337,0.9735505,0.00000379214,0.00025998655,0.0026714092],"study_design_scores_gemma":[0.0027004287,0.0013531361,0.6320222,0.00004015394,0.000025471389,0.00011928488,0.00013575588,0.000029122599,0.31467414,0.0000346967,0.048440658,0.0004249679],"about_ca_topic_score_codex":0.0009407741,"about_ca_topic_score_gemma":0.0016509335,"teacher_disagreement_score":0.65887636,"about_ca_system_score_codex":0.000037719492,"about_ca_system_score_gemma":0.00008555143,"threshold_uncertainty_score":0.7538737},"labels":[],"label_agreement":null},{"id":"W2121731147","doi":"10.1128/iai.72.7.4200-4209.2004","title":"<i>Mycobacterium bovis</i>BCG Urease Attenuates Major Histocompatibility Complex Class II Trafficking to the Macrophage Cell Surface","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver Coastal Health","funders":"Canadian Institutes of Health Research; Genentech; Michael Smith Health Research BC; British Columbia Lung Association","keywords":"Intracellular; Biology; Microbiology; Mycobacterium bovis; Mycobacterium smegmatis; Intracellular parasite; Interferon gamma; Urease; Molecular biology; Biochemistry; Mycobacterium tuberculosis; Enzyme; In vitro; Tuberculosis","score_opus":0.031373823737988936,"score_gpt":0.31082483760163665,"score_spread":0.27945101386364773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121731147","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869266,0.00017023997,0.00031318332,0.0101724,0.00017558521,0.00068900036,0.000022641532,0.00009089632,0.0014394317],"genre_scores_gemma":[0.99609953,0.00012939071,0.00022787985,0.0030644797,0.000101076774,0.000022358636,0.000056744757,0.000015415115,0.0002830993],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99848354,0.00041283006,0.00030631246,0.00026418624,0.00015224046,0.0003808768],"domain_scores_gemma":[0.99886256,0.00016387315,0.000070114496,0.0004678113,0.00013798365,0.00029762852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009092232,0.00017953376,0.0003264294,0.00006747328,0.0006966135,0.000032348315,0.0000950735,0.00010324846,0.00021401727],"category_scores_gemma":[0.00038040403,0.00011472327,0.00010859489,0.00024566913,0.00017659864,0.00008951383,0.00015765711,0.00058274606,0.00012495546],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015577595,0.0024602509,0.28471538,0.0004634235,0.00020524165,0.000035723206,0.0032410382,0.0021238101,0.6628702,0.00014280311,0.029828252,0.012356104],"study_design_scores_gemma":[0.001813275,0.00089013943,0.8961174,0.000037604048,0.000050551207,0.00010299893,0.00011365725,0.0003955936,0.0071651284,0.00005848822,0.09308922,0.00016596609],"about_ca_topic_score_codex":0.008916028,"about_ca_topic_score_gemma":0.0011042753,"teacher_disagreement_score":0.6557051,"about_ca_system_score_codex":0.00021849317,"about_ca_system_score_gemma":0.00007891874,"threshold_uncertainty_score":0.9976837},"labels":[],"label_agreement":null},{"id":"W2121856197","doi":"10.1128/iai.68.4.1988-1996.2000","title":"Purified Lipopolysaccharide from<i>Francisella tularensis</i>Live Vaccine Strain (LVS) Induces Protective Immunity against LVS Infection That Requires B Cells and Gamma Interferon","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Francisella tularensis; Biology; Lipopolysaccharide; Microbiology; Tularemia; Immunity; Antibody; Listeria monocytogenes; Virology; Attenuated vaccine; Francisella; Polyclonal antibodies; Interferon gamma; Immune system; Immunology; Bacteria; Virulence; Gene","score_opus":0.014604060396513177,"score_gpt":0.23010757841465662,"score_spread":0.21550351801814344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121856197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99565107,0.0014387392,0.00020142959,0.00014115096,0.00070663745,0.00074526854,0.000053892345,0.00023090142,0.00083089573],"genre_scores_gemma":[0.99444956,0.0044424827,0.000016737975,0.00016268124,0.00007266246,0.000078497105,0.00027559864,0.000033034186,0.0004687282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99716794,0.0013508387,0.0005468316,0.00043489924,0.00007726981,0.0004222033],"domain_scores_gemma":[0.9987576,0.0002616746,0.00028745722,0.0004826136,0.00015357176,0.000057056794],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007255638,0.0004318904,0.00050666573,0.00029993517,0.0009590605,0.00013231761,0.00013578025,0.00057356746,0.0011949724],"category_scores_gemma":[0.00013550457,0.0004099554,0.00013078941,0.00020058581,0.00026367244,0.00078110205,0.00013266435,0.0011533801,0.00026667086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013210868,0.0001738284,0.0017673465,0.000035055193,0.0002611923,0.0000025125962,0.0025195936,0.000010320737,0.86869323,0.000026838194,0.00011851333,0.1250705],"study_design_scores_gemma":[0.0021435018,0.0006459269,0.1647317,0.000158439,0.00009405545,0.00005641487,0.0005495677,0.000023602011,0.82505673,0.00036651912,0.005735657,0.00043790092],"about_ca_topic_score_codex":0.016855268,"about_ca_topic_score_gemma":0.0010012728,"teacher_disagreement_score":0.16296434,"about_ca_system_score_codex":0.00010842405,"about_ca_system_score_gemma":0.00006541732,"threshold_uncertainty_score":0.99983525},"labels":[],"label_agreement":null},{"id":"W2122263972","doi":"10.1128/iai.71.1.196-204.2003","title":"4-1BB (CD137) Differentially Regulates Murine In Vivo Protein- and Polysaccharide-Specific Immunoglobulin Isotype Responses to<i>Streptococcus pneumoniae</i>","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Uniformed Services University of the Health Sciences; National Institutes of Health; U.S. Department of Defense","keywords":"CD137; Biology; Isotype; Antigen; Germinal center; CD28; Antibody; Immunoglobulin class switching; T cell; Streptococcus pneumoniae; Molecular biology; CD8; Immunology; Microbiology; Monoclonal antibody; Immune system; B cell","score_opus":0.016225015564663138,"score_gpt":0.2211935408054379,"score_spread":0.20496852524077477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122263972","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991393,0.005894726,0.000024372655,0.00050308,0.000560649,0.00066455785,0.000023020802,0.00015626175,0.00078032346],"genre_scores_gemma":[0.9897156,0.0018401043,0.000020615913,0.00012139107,0.000030506875,0.00008532946,0.000013525094,0.000026734035,0.008146213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979223,0.000567658,0.000510064,0.00045688538,0.00004551224,0.0004975933],"domain_scores_gemma":[0.99908364,0.00015090077,0.00014346406,0.00048823227,0.00008048769,0.00005330581],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030065773,0.00035100474,0.00045246768,0.0003839172,0.00046235378,0.0000719809,0.00017854059,0.00038660658,0.0018559804],"category_scores_gemma":[0.00010233761,0.00032554104,0.0000793411,0.0003422386,0.0003599872,0.00018310247,0.00029210202,0.000707006,0.00035883457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038629593,0.00039215412,0.016805924,0.000022189019,0.0000733725,0.0000073174474,0.00056623836,8.277483e-7,0.97248685,0.00013829644,0.00071461283,0.008405926],"study_design_scores_gemma":[0.0029295248,0.0010526101,0.16927917,0.00012343109,0.000030441064,0.00021007968,0.00016716696,0.000008413846,0.75705016,0.0002551026,0.0683318,0.00056208076],"about_ca_topic_score_codex":0.0013025266,"about_ca_topic_score_gemma":0.00030538815,"teacher_disagreement_score":0.21543667,"about_ca_system_score_codex":0.000058128437,"about_ca_system_score_gemma":0.000018836748,"threshold_uncertainty_score":0.99991965},"labels":[],"label_agreement":null},{"id":"W2122698861","doi":"10.1128/iai.72.5.2837-2842.2004","title":"<i>pagP</i>Is Required for Resistance to Antibody-Mediated Complement Lysis during<i>Bordetella bronchiseptica</i>Respiratory Infection","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; U.S. Public Health Service; Wellcome Trust; U.S. Department of Agriculture","keywords":"Bordetella bronchiseptica; Biology; Microbiology; Respiratory tract; Immune system; Complement system; Antibody; Lipopolysaccharide; Immunology; Respiratory system; Bacteria","score_opus":0.021820910486221853,"score_gpt":0.2924422877915678,"score_spread":0.2706213773053459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122698861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953369,0.0003073399,0.0014171749,0.00029641707,0.0011294053,0.00064665714,0.00010057925,0.00020321815,0.0005622919],"genre_scores_gemma":[0.9981072,0.0002951966,0.000083799554,0.00045614113,0.00009987748,0.00012125102,0.00018317209,0.00002551968,0.00062781986],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.998732,0.00015083083,0.00041347137,0.0003277663,0.00002661785,0.00034934946],"domain_scores_gemma":[0.9991601,0.000082284576,0.00014746921,0.00034189806,0.00020775557,0.000060459348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029493743,0.00024104607,0.00031588346,0.0002517915,0.0009527108,0.000060507668,0.00007196544,0.00020844948,0.00037057433],"category_scores_gemma":[0.00015084776,0.00023991546,0.00013592542,0.0003782389,0.000098616416,0.00020701886,0.00008846825,0.00022756313,0.00018481829],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034207653,0.00028886524,0.016939642,0.000073841686,0.00017197174,2.4037314e-7,0.00028734683,0.000016624703,0.9794148,0.00031810103,0.0012711819,0.0008753002],"study_design_scores_gemma":[0.0037042177,0.0005495519,0.33781958,0.000071587376,0.0000855945,0.000017734112,0.000030926374,7.3815164e-7,0.23379435,0.00017942466,0.4233965,0.00034981448],"about_ca_topic_score_codex":0.0019701186,"about_ca_topic_score_gemma":0.001665088,"teacher_disagreement_score":0.7456204,"about_ca_system_score_codex":0.00013599802,"about_ca_system_score_gemma":0.00005092401,"threshold_uncertainty_score":0.9783469},"labels":[],"label_agreement":null},{"id":"W2122847734","doi":"10.1128/iai.71.8.4506-4515.2003","title":"Induction of Specific T-Cell Responses, Opsonizing Antibodies, and Protection against<i>Plasmodium chabaudi adami</i>Infection in Mice Vaccinated with Genomic Expression Libraries Expressed in Targeted and Secretory DNA Vectors","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Monash University; McGill University","keywords":"Plasmodium chabaudi; Biology; Virology; DNA vaccination; Vaccination; Immune system; Malaria vaccine; Antigen; Immunology; Malaria; T cell; Plasmodium falciparum; Immunization; Parasitemia","score_opus":0.017880254597835193,"score_gpt":0.2269859135793573,"score_spread":0.2091056589815221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122847734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969207,0.0012773883,0.00028950258,0.00007646817,0.0000935175,0.0009264351,0.000005493135,0.000049351194,0.0003611309],"genre_scores_gemma":[0.9970156,0.0026484996,0.00013425873,0.000018669858,0.000022727927,0.00005662893,0.000021896558,0.000021240907,0.00006047686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99834996,0.00065085466,0.00032188813,0.00029681038,0.00013642694,0.00024407708],"domain_scores_gemma":[0.99940205,0.00008156048,0.0001598971,0.0001678672,0.000098159406,0.000090478046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006327018,0.00019920591,0.00032774048,0.0006213505,0.00019374616,0.00005302216,0.000024152192,0.00019198014,0.000022319553],"category_scores_gemma":[0.0002182434,0.0001788761,0.000024780315,0.00044159932,0.000111685506,0.00048228525,0.00003964236,0.00061048585,5.39387e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026752315,0.00020703413,0.10935069,0.00023375716,0.000017711222,0.0000072158205,0.0006454906,0.000017294633,0.8850704,0.000028825583,0.000013125959,0.001733268],"study_design_scores_gemma":[0.004482584,0.0006405868,0.6587559,0.00026604187,0.000013547106,0.000053308675,0.00030555256,0.00029985324,0.3343158,0.000041984207,0.00067182386,0.00015301707],"about_ca_topic_score_codex":0.0016247499,"about_ca_topic_score_gemma":0.0003301453,"teacher_disagreement_score":0.55075455,"about_ca_system_score_codex":0.00011138568,"about_ca_system_score_gemma":0.00013047607,"threshold_uncertainty_score":0.72943556},"labels":[],"label_agreement":null},{"id":"W2123239729","doi":"10.1128/iai.00993-10","title":"An<i>In Vivo</i>High-Throughput Screening Approach Targeting the Type IV Secretion System Component VirB8 Identified Inhibitors of<i>Brucella abortus</i>2308 Proliferation","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McMaster University; Juravinski Cancer Centre","funders":"National Institutes of Health; McMaster University; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Bristol-Myers Squibb","keywords":"Biology; Secretion; Effector; Virulence; Microbiology; Brucella; In vivo; Type three secretion system; Cell biology; Immunology; Gene; Genetics; Biochemistry","score_opus":0.038045272442065056,"score_gpt":0.3050089681275557,"score_spread":0.2669636956854906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123239729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951696,0.00015288165,0.0017617492,0.000089928166,0.0012640277,0.0008245755,0.000017172866,0.00015456893,0.0005655371],"genre_scores_gemma":[0.9981942,0.00012663602,0.0010384173,0.00006899222,0.00023675972,0.00011544724,0.00017625089,0.0000318226,0.000011478053],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99703515,0.001360018,0.0007444503,0.00038275903,0.00019376057,0.00028387448],"domain_scores_gemma":[0.9984526,0.00033502755,0.00042971826,0.0005226952,0.00017868934,0.00008123662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023524775,0.00026766155,0.00040127937,0.00015856737,0.0005051738,0.00007943452,0.00013961155,0.00029072195,0.000041517946],"category_scores_gemma":[0.00021522948,0.0002164021,0.000088370085,0.0003254922,0.00017741008,0.0003310681,0.00009761289,0.00071172154,0.0000128877155],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042841822,0.00071488734,0.26550326,0.00025127208,0.00010606965,0.0000067442647,0.001431377,0.0011447106,0.7271836,0.001668303,0.00044220715,0.0011191426],"study_design_scores_gemma":[0.0031086141,0.0018256115,0.85898143,0.0003525172,0.00021438656,0.000347367,0.00248389,0.082101285,0.046585012,0.00024278866,0.002900462,0.0008566053],"about_ca_topic_score_codex":0.010154894,"about_ca_topic_score_gemma":0.00041296356,"teacher_disagreement_score":0.6805986,"about_ca_system_score_codex":0.00010013216,"about_ca_system_score_gemma":0.00003434322,"threshold_uncertainty_score":0.9964366},"labels":[],"label_agreement":null},{"id":"W2123484637","doi":"10.1128/iai.73.6.3219-3227.2005","title":"<i>Salmonella enterica</i>Serovar Typhimurium Pathogenicity Island 2 Is Necessary for Complete Virulence in a Mouse Model of Infectious Enterocolitis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":205,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Research (Canada); Vancouver General Hospital","funders":"","keywords":"Salmonella enterica; Virulence; Microbiology; Biology; Salmonella; Pathogenicity island; Serotype; Virology; Enterocolitis; Pathogenesis; Enterobacteriaceae; Bacteria; Immunology; Escherichia coli; Medicine","score_opus":0.034713222944795584,"score_gpt":0.25180466598102913,"score_spread":0.21709144303623354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123484637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982664,0.00008892688,0.00038958518,0.00025578498,0.00006107287,0.00029428536,0.00025634913,0.000037929858,0.00034966474],"genre_scores_gemma":[0.9982646,0.0005780059,0.00008245315,0.00081238,0.000068789624,0.000046718524,0.00004210979,0.0000016608592,0.00010328936],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989407,0.00016859511,0.00035545023,0.00022862428,0.00006621498,0.00024038773],"domain_scores_gemma":[0.9994309,0.00020096419,0.00015054565,0.00008147588,0.0000738335,0.000062276995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032260825,0.00014919236,0.00029501677,0.000030698524,0.0001367737,0.000018778375,0.000106331754,0.00012706868,0.00006801583],"category_scores_gemma":[0.00005445959,0.000079488964,0.000105537714,0.0001469723,0.000087999295,0.0001540272,0.00008134981,0.00015827655,0.0000051294273],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016308151,0.0003431299,0.29086876,0.000033256867,0.000020565663,2.42496e-7,0.00032753925,0.00018665257,0.6919755,0.000062353676,0.0002877712,0.015731154],"study_design_scores_gemma":[0.0019985973,0.001320695,0.9011389,0.00006432942,0.00003914811,0.000044012715,0.00018818949,0.030155739,0.05031826,0.0028274315,0.011278917,0.0006257761],"about_ca_topic_score_codex":0.0026150148,"about_ca_topic_score_gemma":0.0027844496,"teacher_disagreement_score":0.64165723,"about_ca_system_score_codex":0.000031256586,"about_ca_system_score_gemma":0.000006349412,"threshold_uncertainty_score":0.39531374},"labels":[],"label_agreement":null},{"id":"W2123485510","doi":"10.1128/iai.72.6.3650-3654.2004","title":"Induction of De Novo Subcortical Actin Filament Assembly by <i>Treponema denticola</i> Major Outer Sheath Protein","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Treponema denticola; Cytoskeleton; Actin; Protein filament; Biology; Cell biology; Treponema; Actin cytoskeleton; Phagocytosis; Microbiology; Cell; Immunology; Biochemistry; Bacteria; Genetics","score_opus":0.017894555504451796,"score_gpt":0.2973754867298682,"score_spread":0.2794809312254164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123485510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99790746,0.000078169,0.001008112,0.00011648717,0.0002910271,0.0002421147,0.000028731225,0.00003799735,0.0002898808],"genre_scores_gemma":[0.9990455,0.000038638715,0.00011899148,0.00004275348,0.00003757864,0.000027378564,0.00003214979,0.000009305515,0.000647717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990963,0.00020900626,0.00023433265,0.00015307826,0.00009398798,0.0002133069],"domain_scores_gemma":[0.9995762,0.00002899402,0.00007119507,0.00017796138,0.00007819141,0.00006743254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000321256,0.00010527405,0.00016003948,0.00007458903,0.00020101502,0.000057589834,0.00006436359,0.00019642578,0.00025003217],"category_scores_gemma":[0.00012442419,0.00010075826,0.00005962711,0.00013376569,0.00013425917,0.00019522873,0.000074712196,0.0004103151,0.000053516243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115765266,0.0003517034,0.07923708,0.000047617956,0.00003809829,0.000012539164,0.000090298614,0.0000018648126,0.91861635,0.00009165006,0.00030267454,0.0010943551],"study_design_scores_gemma":[0.0011148265,0.0002797454,0.420809,0.000047717713,0.000018154018,0.00038588876,0.00004765518,0.0000031909171,0.57485557,0.0001162028,0.0022072766,0.0001147527],"about_ca_topic_score_codex":0.0037908736,"about_ca_topic_score_gemma":0.0007614292,"teacher_disagreement_score":0.34376076,"about_ca_system_score_codex":0.00010452825,"about_ca_system_score_gemma":0.000059438906,"threshold_uncertainty_score":0.5730692},"labels":[],"label_agreement":null},{"id":"W2123607325","doi":"10.1128/iai.01483-07","title":"In Vivo Analysis of <i>Aspergillus fumigatus</i> Developmental Gene Expression Determined by Real-Time Reverse Transcription-PCR","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Aspergillus fumigatus; Gene expression; Gene; In vivo; In vitro; Microbiology; Hypha; Molecular biology; Genetics","score_opus":0.01495288510446345,"score_gpt":0.2525711920552429,"score_spread":0.23761830695077948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123607325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978878,0.000071149174,0.00011990102,0.000026497863,0.00004005878,0.0001442628,0.000027876538,0.00002562845,0.0016568139],"genre_scores_gemma":[0.99659353,0.0015173241,0.0003415311,0.00010165776,0.000008948347,0.000005942579,0.00005921921,0.0000067421834,0.0013650758],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911416,0.00010379753,0.00032808314,0.00017373389,0.00014927457,0.00013096807],"domain_scores_gemma":[0.99956197,0.000038601833,0.00007152712,0.00017598958,0.000074439704,0.00007749106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002170241,0.00011507782,0.0003580402,0.00021183756,0.00013325282,0.000003929587,0.000029951912,0.0001007643,0.0006394141],"category_scores_gemma":[0.000059324128,0.000103912935,0.00011760271,0.0005548884,0.00012523889,0.00016484146,0.000016798946,0.0001474571,0.000005062822],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002611614,0.00019603068,0.24208586,0.00002335905,0.00006668852,0.00000653598,0.0005799851,0.0000017106235,0.75587076,7.7001795e-7,0.00074004545,0.00016710987],"study_design_scores_gemma":[0.0009753764,0.0001120288,0.6017368,0.000039531584,0.00014839623,0.000022564398,0.000116436306,0.000099064004,0.39541894,0.000003458879,0.0012248841,0.0001025307],"about_ca_topic_score_codex":0.0028146766,"about_ca_topic_score_gemma":0.00036175837,"teacher_disagreement_score":0.36045182,"about_ca_system_score_codex":0.0000919483,"about_ca_system_score_gemma":0.00005677079,"threshold_uncertainty_score":0.70011365},"labels":[],"label_agreement":null},{"id":"W2123740304","doi":"10.1128/iai.69.8.5162-5165.2001","title":"Localization of Surface Immunogenic Protein on Group B Streptococcus","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Immunogold labelling; Biology; Serotype; Streptococcus agalactiae; Antibody; Recombinant DNA; Streptococcus; Group A; Microbiology; Molecular biology; Streptococcaceae; Bacteria; Immunology; Biochemistry; Gene","score_opus":0.017047317130587516,"score_gpt":0.27124782025504784,"score_spread":0.25420050312446035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123740304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994757,0.0000709477,0.0015640778,0.000053481122,0.00009888914,0.0003231617,0.0000026885307,0.00006112413,0.0030686483],"genre_scores_gemma":[0.99891365,0.00020902426,0.000019606334,0.000067289,0.000022504199,0.000011485367,0.000018731154,0.000007448064,0.0007302523],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995552,0.000049038725,0.00015270413,0.00008257286,0.00007961649,0.00008087602],"domain_scores_gemma":[0.99966115,0.000015376441,0.00006031389,0.00014697753,0.00007392066,0.000042287607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001057039,0.00007681298,0.00011930821,0.00006318161,0.000109589695,0.000009042878,0.000016350989,0.000053727163,0.0001809535],"category_scores_gemma":[0.000031459902,0.000065224456,0.000046623685,0.00017689588,0.00005416477,0.000081271675,0.000021156782,0.00013835612,0.00002300848],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010519321,0.0019686986,0.4347461,0.00035474778,0.00020888755,0.000015043548,0.00029784915,0.0005004873,0.48287985,0.0034514277,0.00017663787,0.074348375],"study_design_scores_gemma":[0.0027674588,0.0025118727,0.79505414,0.00040846193,0.00008282676,0.0003285116,0.00008773965,0.00081685104,0.14827764,0.0008276724,0.04859324,0.00024357106],"about_ca_topic_score_codex":0.0029098406,"about_ca_topic_score_gemma":0.0000923399,"teacher_disagreement_score":0.36030808,"about_ca_system_score_codex":0.000030143421,"about_ca_system_score_gemma":0.000012704063,"threshold_uncertainty_score":0.43988279},"labels":[],"label_agreement":null},{"id":"W2123920430","doi":"10.1128/iai.73.10.7022-7026.2005","title":"Digalactoside Expression in the Lipopolysaccharide of <i>Haemophilus influenzae</i> and Its Role in Intravascular Survival","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"Medical Research Council","keywords":"Haemophilus influenzae; Virulence; Biology; Lipopolysaccharide; Microbiology; Virulence factor; Phase variation; Recombinant DNA; Gene; Virology; Immunology; Genetics; Antibiotics","score_opus":0.010863973545801302,"score_gpt":0.2410196177348354,"score_spread":0.23015564418903411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123920430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975902,0.0017538331,0.00008863978,0.00006949764,0.000033510998,0.00014461181,0.0000018606318,0.0000036625327,0.000314199],"genre_scores_gemma":[0.9983216,0.001450729,0.00003640905,0.000113402566,0.00004214975,0.000016127811,0.0000042229103,0.0000057989123,0.000009584357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929863,0.00024416932,0.00016663405,0.00011857024,0.00007043016,0.0001015913],"domain_scores_gemma":[0.9997154,0.000026542115,0.0000512866,0.00016311806,0.000020932586,0.00002270814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005135157,0.00008560851,0.000109496454,0.00005031514,0.000052536016,0.000014384577,0.00006761485,0.000104786835,0.000007497951],"category_scores_gemma":[0.00009959552,0.00006646248,0.00002725331,0.000059490256,0.000031212203,0.000013060947,0.000062289306,0.00011975297,8.6324496e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044965785,0.000058932754,0.011929,0.000012052855,0.0000052570877,2.9976115e-7,0.00025966222,0.000023263512,0.9794356,0.00008112351,0.0000034462269,0.008146358],"study_design_scores_gemma":[0.00040284378,0.00009387401,0.053891137,0.000028998722,0.0000043777036,0.000010334414,0.00013173802,0.00003643933,0.94299805,0.00017169716,0.0021499344,0.00008054918],"about_ca_topic_score_codex":0.0004611541,"about_ca_topic_score_gemma":0.00041516975,"teacher_disagreement_score":0.041962136,"about_ca_system_score_codex":0.000005192368,"about_ca_system_score_gemma":0.0000121354415,"threshold_uncertainty_score":0.27102613},"labels":[],"label_agreement":null},{"id":"W2123947085","doi":"10.1128/iai.72.11.6455-6462.2004","title":"Role of Protein Tyrosine Kinase p53/56<i><sup>lyn</sup></i>in Diminished Lipopolysaccharide Priming of Formylmethionylleucyl- phenylalanine-Induced Superoxide Production in Human Newborn Neutrophils","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"IWK Health Centre; Sick Kids Foundation; Canadian Institutes of Health Research; Abbott Laboratories","keywords":"LYN; Tyrosine; Kinase; Biology; Lipopolysaccharide; Proto-oncogene tyrosine-protein kinase Src; p38 mitogen-activated protein kinases; Tyrosine phosphorylation; Tyrosine kinase; Syk; Phosphorylation; Superoxide; Protein kinase A; Molecular biology; Biochemistry; Immunology; Signal transduction; Enzyme","score_opus":0.013038327634852437,"score_gpt":0.24435137216952627,"score_spread":0.23131304453467383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123947085","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981204,0.00056436757,0.00003661897,0.00013821095,0.000121514066,0.00070373795,0.0000035279263,0.000046530244,0.00026508313],"genre_scores_gemma":[0.9995017,0.00014146781,0.000081712664,0.000014800575,0.000029470662,0.00006301788,0.000063954634,0.000019479621,0.00008436509],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99812186,0.0004469826,0.00080737646,0.00026150432,0.00006308143,0.00029921473],"domain_scores_gemma":[0.9991151,0.000052407027,0.00030733386,0.00036706057,0.0001373256,0.000020778007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008193166,0.00022707263,0.00044380085,0.00056545675,0.00018753229,0.000013387041,0.00011718551,0.00031045935,0.000038698487],"category_scores_gemma":[0.0003197711,0.00022698184,0.00010756947,0.0003818365,0.0001566896,0.0004016029,0.00008635597,0.00056676334,0.0000075030657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005084514,0.00040829985,0.0037878987,0.00009023695,0.00004352448,0.0000010781787,0.0023499078,0.0002519104,0.98217565,0.0009224233,0.0000022399,0.009458376],"study_design_scores_gemma":[0.002464188,0.0005509164,0.062465504,0.00033597508,0.000026107644,0.000027181724,0.00070954754,0.000012527812,0.932313,0.0007265989,0.00018368372,0.00018475174],"about_ca_topic_score_codex":0.008800592,"about_ca_topic_score_gemma":0.00040231453,"teacher_disagreement_score":0.058677603,"about_ca_system_score_codex":0.00011464597,"about_ca_system_score_gemma":0.00011639764,"threshold_uncertainty_score":0.9977999},"labels":[],"label_agreement":null},{"id":"W2124080661","doi":"10.1128/iai.00158-11","title":"Chitin-Induced Carbotype Conversion in Vibrio vulnificus","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"Vibrio vulnificus; Biology; Horizontal gene transfer; Lytic cycle; Microbiology; Vibrionaceae; Chitin; Transformation (genetics); Genetics; Biofilm; DNA; Virulence; Bacteria; Gene; Biochemistry; Phylogenetics","score_opus":0.03457703986893304,"score_gpt":0.2648233291853095,"score_spread":0.23024628931637645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124080661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332047,0.000082349696,0.000017475106,0.000017509781,0.00012897924,0.000092362694,0.000001731424,0.00001055259,0.006328561],"genre_scores_gemma":[0.9993799,0.0004083073,0.000021703574,0.00003616026,0.000032398584,0.0000079131805,0.000014046915,0.000005880016,0.00009371608],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995233,0.00009812717,0.00008669578,0.00012156007,0.000041538035,0.00012879944],"domain_scores_gemma":[0.9997472,0.0000052314767,0.000025770707,0.0001444542,0.0000404676,0.000036881327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014874485,0.00007328831,0.00007593522,0.000050120292,0.00008750815,0.00001057181,0.00004036863,0.000074320014,0.000042417294],"category_scores_gemma":[0.0000836104,0.0000695116,0.000023556988,0.000066868066,0.000053239834,0.00000543567,0.000121197285,0.00011432524,0.00001005491],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010346764,0.00006462492,0.10809035,0.000013497035,0.000020767007,0.0000015620601,0.00020710778,2.0330883e-7,0.889577,0.000015423251,0.00006612049,0.0018399277],"study_design_scores_gemma":[0.00039299633,0.00026288105,0.68224657,0.000006668851,0.0000027784336,0.0000062967424,0.000065896595,0.0000055872333,0.31496784,0.000017766863,0.0019469144,0.00007781811],"about_ca_topic_score_codex":0.002879619,"about_ca_topic_score_gemma":0.00048541182,"teacher_disagreement_score":0.5746091,"about_ca_system_score_codex":0.000012591209,"about_ca_system_score_gemma":0.00002264703,"threshold_uncertainty_score":0.43531415},"labels":[],"label_agreement":null},{"id":"W2124215822","doi":"10.1128/iai.00161-10","title":"Role for CD2AP and Other Endocytosis-Associated Proteins in Enteropathogenic <i>Escherichia coli</i> Pedestal Formation","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Simon Fraser University; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Endocytic cycle; Biology; Cell biology; Endocytosis; Enteropathogenic Escherichia coli; Cortactin; Phosphorylation; Intimin; Signal transducing adaptor protein; Actin; Virulence; Escherichia coli; Cytoskeleton; Biochemistry; Cell; Enterobacteriaceae","score_opus":0.011611316492537513,"score_gpt":0.266952208486033,"score_spread":0.2553408919934955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124215822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848044,0.00013448775,0.00024792936,0.000037750964,0.00005051824,0.00047510132,0.0000203687,0.000013361172,0.0005400216],"genre_scores_gemma":[0.9991939,0.00019019912,0.00015163363,0.00011964507,0.000038580125,0.0001964847,0.00002634569,0.000010531963,0.00007267423],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994515,0.000096924574,0.00012127244,0.000121723606,0.00004964903,0.00015891365],"domain_scores_gemma":[0.99971575,0.000018544371,0.000052571962,0.00010872658,0.00006509731,0.000039337992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032435215,0.00009194452,0.00009335548,0.00003912424,0.00016984637,0.000035489567,0.000038899285,0.00009769675,0.000004269639],"category_scores_gemma":[0.00026732706,0.00008893018,0.000031284275,0.00006858166,0.000069295544,0.000013805714,0.00008452296,0.00018454646,6.6521983e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006908512,0.00009477483,0.049870018,0.000022144692,0.000017064296,8.322993e-8,0.00015385816,5.2544436e-7,0.948484,0.000028520964,0.00002699302,0.0012329322],"study_design_scores_gemma":[0.0030048273,0.0010597624,0.60483557,0.000028436241,0.000021077913,0.000015386855,0.00029924198,0.0008851493,0.3504304,0.00021239203,0.038888536,0.00031925444],"about_ca_topic_score_codex":0.00042260214,"about_ca_topic_score_gemma":0.0051216194,"teacher_disagreement_score":0.59805363,"about_ca_system_score_codex":0.000012113153,"about_ca_system_score_gemma":0.000025006997,"threshold_uncertainty_score":0.36264676},"labels":[],"label_agreement":null},{"id":"W2124446505","doi":"10.1128/iai.00721-06","title":"Evidence that Tight Junctions Are Disrupted Due to Intimate Bacterial Contact and Not Inflammation during Attaching and Effacing Pathogen Infection In Vivo","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Citrobacter rodentium; Tight junction; Inflammation; Biology; In vivo; Claudin; Microbiology; Pathogenesis; Cell biology; In vitro; Pathogen; Immunology; Genetics","score_opus":0.03242451364409205,"score_gpt":0.26530062307043956,"score_spread":0.2328761094263475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124446505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974979,0.00004374625,0.0010157862,0.00013234037,0.0006838172,0.00027492162,0.000012009657,0.00010180159,0.00023765818],"genre_scores_gemma":[0.99936974,0.0003451481,0.000016849655,0.00006651423,0.00011528597,0.000030338299,0.000002492481,0.0000102564245,0.00004335702],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989416,0.00023021079,0.00024877038,0.0002923694,0.00011146501,0.00017556407],"domain_scores_gemma":[0.99947894,0.00013536609,0.00015939865,0.00012748339,0.00004042425,0.00005841909],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002449515,0.00017274919,0.00020852652,0.00025851317,0.0008428781,0.0002140705,0.000025361676,0.000083543484,0.000026644519],"category_scores_gemma":[0.0004582424,0.00016233962,0.000026468397,0.00028277515,0.00006382821,0.00088289706,0.000120853074,0.00025101405,0.000002997624],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010346462,0.000009944744,0.3076707,0.000054240983,0.000004254798,0.000003298563,0.00048882706,0.000036650476,0.6896605,0.00006788018,0.000009267783,0.0018909988],"study_design_scores_gemma":[0.00045604978,0.000058757043,0.86290425,0.00013380685,0.000015379817,0.00010159736,0.000043903943,0.00012703083,0.13543178,0.00006438589,0.00051003695,0.00015303823],"about_ca_topic_score_codex":0.0026987141,"about_ca_topic_score_gemma":0.002357055,"teacher_disagreement_score":0.55523354,"about_ca_system_score_codex":0.000062635554,"about_ca_system_score_gemma":0.0000086995105,"threshold_uncertainty_score":0.6620018},"labels":[],"label_agreement":null},{"id":"W2124457777","doi":"10.1128/iai.71.7.3844-3851.2003","title":"Induction of Protective Immunity against<i>Schistosoma mansoni</i>via DNA Priming and Boosting with the Large Subunit of Calpain (Sm-p80): Adjuvant Effects of Granulocyte-Macrophage Colony-Stimulating Factor and Interleukin-4","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Ste. Anne's Hospital","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Texas Tech University Health Sciences Center","keywords":"Biology; DNA vaccination; Immunogenicity; Immune system; Immunology; Schistosoma mansoni; Immunity; Virology; Schistosomiasis; Microbiology; Immunization; Helminths","score_opus":0.008579054932778005,"score_gpt":0.2443350354968781,"score_spread":0.2357559805641001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124457777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99617267,0.0011829082,0.0015749042,0.000012440025,0.00016316121,0.00059089577,0.000023970599,0.000024183842,0.0002548419],"genre_scores_gemma":[0.99968666,0.0001363314,0.000054137665,0.00001871894,0.0000054522534,0.000024552104,0.000013879246,0.000013307356,0.00004696859],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841344,0.0008353555,0.0003427505,0.00016963163,0.000042948537,0.0001958966],"domain_scores_gemma":[0.998537,0.0006181825,0.00043952937,0.00020689458,0.00017424765,0.000024113884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045471665,0.00019221027,0.00038527744,0.00015024381,0.00056089094,0.00001252416,0.000057738784,0.00016371811,0.000017155822],"category_scores_gemma":[0.00037891534,0.00014518642,0.00005469014,0.0001834814,0.0004241964,0.00018058623,0.00007439199,0.0006315205,7.102618e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033304477,0.00022683304,0.07001621,0.00028372323,0.00021514669,0.0000010100649,0.0045792796,0.000012512982,0.91588116,0.00012577433,0.000002852089,0.008322443],"study_design_scores_gemma":[0.0018388492,0.001260976,0.49648365,0.00030679168,0.00010732995,0.00011127562,0.0010608415,0.000071389855,0.49816948,0.000041757474,0.00038536685,0.0001622965],"about_ca_topic_score_codex":0.0029731935,"about_ca_topic_score_gemma":0.00045152087,"teacher_disagreement_score":0.42646745,"about_ca_system_score_codex":0.000040070205,"about_ca_system_score_gemma":0.00003575985,"threshold_uncertainty_score":0.59205306},"labels":[],"label_agreement":null},{"id":"W2124547739","doi":"10.1128/iai.72.9.5235-5246.2004","title":"Activation of Dendritic Cells by Liposomes Prepared from Phosphatidylinositol Mannosides from<i>Mycobacterium bovis</i>Bacillus Calmette-Guerin and Adjuvant Activity In Vivo","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Mycobacterium bovis; Adjuvant; Biology; In vivo; Microbiology; Liposome; Phosphatidylinositol; In vitro; Mycobacterium tuberculosis; Bacillus (shape); Immunology; Biochemistry; Tuberculosis; Signal transduction; Medicine","score_opus":0.007926977695882912,"score_gpt":0.24420304952381588,"score_spread":0.23627607182793298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124547739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842864,0.0007428821,0.00021235945,0.00006538971,0.00008779698,0.00021336557,0.00016799348,0.00001284934,0.000068724585],"genre_scores_gemma":[0.996752,0.0028861808,0.00012967842,0.000050840124,0.00003700078,0.000025272862,0.0000758146,0.000010791557,0.000032393218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916893,0.00014877282,0.00017620507,0.00024383893,0.000100956706,0.00016132244],"domain_scores_gemma":[0.9995258,0.00006139066,0.00008930691,0.00019758278,0.00006954816,0.00005637325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009531715,0.00014887804,0.00021005305,0.000045543293,0.00010003409,0.000028637123,0.00005715298,0.000126846,0.000011083349],"category_scores_gemma":[0.00012432027,0.00013801432,0.000035648995,0.00009859838,0.00013600744,0.000029730878,0.00016840162,0.000164493,5.203797e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015673232,0.00022349646,0.045329005,0.000029776724,0.00006387536,6.600463e-7,0.00021091351,0.000013349006,0.95196253,0.0000013548098,0.00009294275,0.001915341],"study_design_scores_gemma":[0.0007960772,0.00018217943,0.2623518,0.000039949042,0.00001111492,8.096833e-7,0.00008472623,0.000022970451,0.7353506,0.00004931585,0.0009999414,0.00011050161],"about_ca_topic_score_codex":0.017944656,"about_ca_topic_score_gemma":0.0015723574,"teacher_disagreement_score":0.21702279,"about_ca_system_score_codex":0.000040865114,"about_ca_system_score_gemma":0.000041091545,"threshold_uncertainty_score":0.98859495},"labels":[],"label_agreement":null},{"id":"W2124628990","doi":"10.1128/iai.73.9.6005-6016.2005","title":"Interaction of Enteropathogenic and Shiga Toxin-Producing <i>Escherichia coli</i> and Porcine Intestinal Mucosa: Role of Intimin and Tir in Adherence","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Curtin University of Technology","keywords":"Intimin; Biology; Enteropathogenic Escherichia coli; Shiga toxin; Microbiology; Escherichia coli; Shiga-like toxin; Virology; Enterobacteriaceae; Gene; Biochemistry","score_opus":0.012843479854144723,"score_gpt":0.2752391897798857,"score_spread":0.26239570992574096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124628990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766535,0.0018651373,0.000047795038,0.00005074833,0.000022279713,0.000119093194,0.0000029316975,0.000003953158,0.00022273287],"genre_scores_gemma":[0.99668753,0.0028517626,0.0003562838,0.000037692338,0.000023791557,0.00000967228,0.00000489213,0.0000052707624,0.000023086797],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994176,0.000101831276,0.00017995558,0.00016143838,0.00004583644,0.00009331397],"domain_scores_gemma":[0.9996758,0.000027799462,0.000083154795,0.000104209874,0.000073310985,0.00003571897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028662305,0.0000894906,0.00014242216,0.000057486755,0.000050919956,0.000011355532,0.000027589296,0.00004884643,0.0000039184843],"category_scores_gemma":[0.00024205368,0.00008658711,0.000014027072,0.00008467521,0.0001536879,0.000018243547,0.00018356096,0.00014838664,1.16049804e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010592777,0.00006284534,0.20766504,0.000057762096,0.000014793641,1.615356e-7,0.00031116506,0.0000026507464,0.7768236,0.000007899893,0.0000072598637,0.014940901],"study_design_scores_gemma":[0.0005752207,0.0006922934,0.64726007,0.00008008795,0.000011479411,0.000025898766,0.0003629953,0.0003778004,0.34987396,0.000027302598,0.00062597747,0.00008691821],"about_ca_topic_score_codex":0.00079454225,"about_ca_topic_score_gemma":0.0008034262,"teacher_disagreement_score":0.439595,"about_ca_system_score_codex":0.000007333631,"about_ca_system_score_gemma":0.000017632106,"threshold_uncertainty_score":0.35309198},"labels":[],"label_agreement":null},{"id":"W2124781105","doi":"10.1128/iai.70.11.6273-6283.2002","title":"Intracellular Growth of <i>Legionella pneumophila</i> Gives Rise to a Differentiated Form Dissimilar to Stationary-Phase Forms","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Cytoplasm; Staining; Bacteria; Bacterial outer membrane; Peptidoglycan; Microbiology; Legionella pneumophila; Intracellular; Ultrastructure; Vacuole; Cell biology; Biochemistry; Escherichia coli; Anatomy","score_opus":0.017340114037529768,"score_gpt":0.2762768595405257,"score_spread":0.25893674550299595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124781105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959097,0.00015558915,0.0023485331,0.00050962553,0.00006697848,0.00028644636,0.000033448443,0.000014877477,0.0006748027],"genre_scores_gemma":[0.99855244,0.0006536097,0.00006745733,0.00018406125,0.00004686916,0.000025487032,0.00007884191,0.000014136629,0.00037711422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992064,0.00006327268,0.00020396034,0.00019707567,0.00012734633,0.00020191974],"domain_scores_gemma":[0.99937826,0.000014986261,0.000052602074,0.0002269389,0.0001523911,0.00017482911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013126987,0.0001320194,0.00013920425,0.00012282158,0.00017518102,0.000028458117,0.00009678146,0.000089915695,0.00003163057],"category_scores_gemma":[0.000102424994,0.000115019095,0.000061876024,0.00022151874,0.00006523685,0.0000142696435,0.0001336351,0.00011754662,0.000014404494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020351706,0.0005781357,0.007096971,0.000055066772,0.00005620036,0.000002289037,0.0005571228,0.0000130282015,0.9833147,0.00012364224,0.0025581038,0.0054412503],"study_design_scores_gemma":[0.0021722743,0.0022460867,0.03501489,0.00004486,0.000029170571,0.000028638218,0.00016414034,0.0006056184,0.93321925,0.0004408456,0.025639184,0.00039500959],"about_ca_topic_score_codex":0.00019155059,"about_ca_topic_score_gemma":0.000036934536,"teacher_disagreement_score":0.05009539,"about_ca_system_score_codex":0.000013298597,"about_ca_system_score_gemma":0.0000130252,"threshold_uncertainty_score":0.46903425},"labels":[],"label_agreement":null},{"id":"W2124803334","doi":"10.1128/iai.01003-12","title":"Activation of the Nlrp1b Inflammasome by Reduction of Cytosolic ATP","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Inflammasome; AMPK; Biology; Cell biology; Innate immune system; Pattern recognition receptor; Protein kinase A; Proinflammatory cytokine; Cytosol; AIM2; Receptor; Adenosine triphosphate; Caspase 1; Phosphorylation; Biochemistry; Inflammation; Immunology; Enzyme","score_opus":0.006913035160356717,"score_gpt":0.22726436154492508,"score_spread":0.22035132638456836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124803334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981872,0.0002802246,0.00011018021,0.000047332538,0.00017706376,0.0000959098,0.0000029356638,0.000004361628,0.0010948153],"genre_scores_gemma":[0.99939847,0.0003089768,0.000007751368,0.0000259708,0.00004676822,0.0000057931193,0.000031239975,0.0000060192338,0.00016901769],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99956554,0.000078923666,0.00015187892,0.000056107245,0.000054627497,0.00009289555],"domain_scores_gemma":[0.9995871,0.0000048024917,0.00013185827,0.00019513458,0.00006482773,0.000016273874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001539215,0.000066012406,0.00007342469,0.000027024058,0.00008844135,0.0000036543522,0.00004725236,0.00008799155,0.000013145729],"category_scores_gemma":[0.000061633385,0.000053122036,0.000053749023,0.00009690847,0.00009947034,0.000017675258,0.00005596,0.000079014724,9.212255e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031692256,0.000063889485,0.03221611,0.000016839029,0.000023852468,1.0555538e-9,0.00024952987,0.0000055359124,0.96435064,0.000050761817,0.0002625339,0.002728625],"study_design_scores_gemma":[0.00021460108,0.00007337898,0.15057994,0.000008565648,0.0000090436,0.000003169154,0.000106613064,0.000002235614,0.8319359,0.000016263672,0.016999207,0.00005107361],"about_ca_topic_score_codex":0.00025849533,"about_ca_topic_score_gemma":0.0000033116523,"teacher_disagreement_score":0.13241473,"about_ca_system_score_codex":0.0000064415726,"about_ca_system_score_gemma":0.000015817712,"threshold_uncertainty_score":0.21662538},"labels":[],"label_agreement":null},{"id":"W2125107622","doi":"10.1128/iai.72.7.3925-3931.2004","title":"<i>Helicobacter pylori</i>with a Truncated Lipopolysaccharide O Chain Fails To Induce Gastritis in SCID Mice Injected with Splenocytes from Wild-Type C57BL/6J Mice","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Gastritis; Biology; Helicobacter pylori; Splenocyte; Lipopolysaccharide; Microbiology; Spirillaceae; Helicobacter; Immunology; Virology; Spleen; Genetics","score_opus":0.015221000122814016,"score_gpt":0.2439966776489496,"score_spread":0.2287756775261356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125107622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960528,0.00015181059,0.0002296977,0.002263942,0.00021549202,0.0007336623,0.000023168692,0.0002219527,0.00010749213],"genre_scores_gemma":[0.9964878,0.00028480517,0.00062485674,0.002215491,0.000110767294,0.00006531065,0.00012224802,0.000049818365,0.000038903905],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980895,0.0001571492,0.00044135863,0.00051435234,0.00023693623,0.00056072057],"domain_scores_gemma":[0.9987119,0.000095100186,0.00014985364,0.0003955226,0.00038691025,0.00026072984],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00024652033,0.00041392288,0.000614291,0.0004968306,0.00023877996,0.00007572968,0.000110496854,0.00022761016,0.00005021633],"category_scores_gemma":[0.000253554,0.00033944467,0.000044275315,0.0011047508,0.00022827531,0.00038758933,0.00012076044,0.0010472186,0.000065666616],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004107109,0.0006573946,0.7766017,0.00004837732,0.0006389848,0.00010291232,0.0038989072,0.000056849276,0.2115545,0.000009140137,0.000080819525,0.002243356],"study_design_scores_gemma":[0.008217604,0.003941926,0.9462853,0.00069820014,0.0002150487,0.00034643055,0.00071291754,0.000009774188,0.038459145,0.000019180508,0.0007612165,0.00033324835],"about_ca_topic_score_codex":0.033371158,"about_ca_topic_score_gemma":0.01480519,"teacher_disagreement_score":0.17309535,"about_ca_system_score_codex":0.00030919485,"about_ca_system_score_gemma":0.0001678777,"threshold_uncertainty_score":0.99990577},"labels":[],"label_agreement":null},{"id":"W2125121441","doi":"10.1128/iai.71.6.3028-3033.2003","title":"A Fluoroquinolone Induces a Novel Mitogen-Encoding Bacteriophage in<i>Streptococcus canis</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Bacteriophage; Microbiology; Streptococcus; Virology; Bacteria; Genetics; Escherichia coli; Gene","score_opus":0.03487158722831345,"score_gpt":0.2923607115828088,"score_spread":0.25748912435449534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125121441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892859,0.00013776662,0.0000901368,0.000034523207,0.0003675217,0.00044058502,0.000005090461,0.00007225022,0.009566246],"genre_scores_gemma":[0.9991543,0.000165434,0.00009455794,0.00010823082,0.000029056062,0.000099081735,0.000012384538,0.000012873682,0.00032404214],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992166,0.00006792637,0.00022868268,0.00019720352,0.000077336925,0.00021221813],"domain_scores_gemma":[0.99951875,0.00004268714,0.00006240146,0.00021226116,0.000058219357,0.00010570686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014031681,0.00016,0.00023008788,0.0002021449,0.00019512897,0.00003871568,0.000020417005,0.00011723335,0.0002481184],"category_scores_gemma":[0.00012811268,0.00014399472,0.00006773482,0.000356564,0.000067829955,0.00015540345,0.000024225415,0.00029547364,0.00002412744],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037439808,0.0006827308,0.8032969,0.00003506245,0.000080798025,0.000013178482,0.00029224076,0.0000013109156,0.18968078,0.00029752293,0.00002637645,0.005555614],"study_design_scores_gemma":[0.0030798297,0.0003402517,0.9376719,0.00009173724,0.000050854007,0.0002416939,0.00012911519,0.000012144505,0.05328724,0.000049573522,0.004900631,0.00014505608],"about_ca_topic_score_codex":0.0029922668,"about_ca_topic_score_gemma":0.00028149225,"teacher_disagreement_score":0.13639355,"about_ca_system_score_codex":0.00011915785,"about_ca_system_score_gemma":0.00006733706,"threshold_uncertainty_score":0.5871934},"labels":[],"label_agreement":null},{"id":"W2125159420","doi":"10.1128/iai.00170-11","title":"Burkholderia cenocepacia ShvR-Regulated Genes That Influence Colony Morphology, Biofilm Formation, and Virulence","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Biology; Burkholderia cenocepacia; Virulence; Complementation; Burkholderia cepacia complex; Biofilm; Mutant; Microbiology; Gene; Burkholderia; Genetics; Bacteria","score_opus":0.036924880754097465,"score_gpt":0.2924850012019219,"score_spread":0.25556012044782445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125159420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741906,0.0009995381,0.00032744085,0.00008855736,0.00007767395,0.00027713086,0.000008624757,0.000086019,0.0007159717],"genre_scores_gemma":[0.9974779,0.0016617927,0.0005781816,0.0001337446,0.000009690929,0.00001947937,0.000016572238,0.000008255493,0.00009437208],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992822,0.000090978814,0.0001668208,0.00014755689,0.000117315896,0.00019516074],"domain_scores_gemma":[0.9993998,0.000055903016,0.000073448784,0.00020742764,0.00015849221,0.000104964565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002274136,0.000117110554,0.00017000805,0.00013109621,0.00023982428,0.000029627916,0.000044106546,0.00009193957,0.00019510185],"category_scores_gemma":[0.0002276761,0.00010116794,0.000022828393,0.00019244819,0.00040026492,0.00046122598,0.0000850305,0.0002035011,0.000020434933],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043575873,0.00015509779,0.32776782,0.00020685603,0.00004919972,0.000010981645,0.0012674866,0.0000024912329,0.64328915,0.00014204897,0.00018278824,0.026490282],"study_design_scores_gemma":[0.0006809809,0.0003908231,0.89473176,0.00006534199,0.000021962662,0.0003527146,0.00013424408,0.0001967072,0.09914706,0.0002801389,0.0038976788,0.000100594],"about_ca_topic_score_codex":0.0023855665,"about_ca_topic_score_gemma":0.0000860516,"teacher_disagreement_score":0.5669639,"about_ca_system_score_codex":0.00003520124,"about_ca_system_score_gemma":0.000031101164,"threshold_uncertainty_score":0.4125509},"labels":[],"label_agreement":null},{"id":"W2125244276","doi":"10.1128/iai.00403-09","title":"Critical Role of the Interleukin-17/Interleukin-17 Receptor Axis in Regulating Host Susceptibility to Respiratory Infection with<i>Chlamydia</i>Species","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Biology; CXCL2; Chemokine; CXCL1; Immunology; Chlamydia; Cytokine; Interleukin; Chemokine receptor; Immune system","score_opus":0.020282948507294726,"score_gpt":0.29773142993533624,"score_spread":0.2774484814280415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125244276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99200916,0.00019826631,0.000102951366,0.0004409652,0.00042188782,0.0005534034,0.000011708894,0.00008127951,0.0061803497],"genre_scores_gemma":[0.99888766,0.00003310435,0.000032728152,0.00015827033,0.000055848614,0.000036553432,0.000007798141,0.000014042694,0.000774013],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974537,0.0011343046,0.000505065,0.00043518058,0.000097979326,0.00037375162],"domain_scores_gemma":[0.9982866,0.00034579675,0.00013314883,0.0007359232,0.00045396943,0.000044552442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013131753,0.00023349965,0.00033813177,0.0003861253,0.00047513866,0.000053852524,0.00016395016,0.0002510489,0.0005224915],"category_scores_gemma":[0.0018701485,0.00018057955,0.000112464055,0.000798322,0.000673516,0.00037741923,0.00015827049,0.0011145513,0.000047392652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032394603,0.00045034927,0.31900227,0.000019488594,0.00003410348,2.3241098e-7,0.00091210986,0.000029393248,0.67234915,0.00046262154,0.0003772323,0.0060391026],"study_design_scores_gemma":[0.0004791561,0.0009131594,0.7532266,0.000107627675,0.000012199942,0.000033663688,0.00030269657,0.0000022202753,0.23191354,0.00018983136,0.012668414,0.00015092613],"about_ca_topic_score_codex":0.0032657783,"about_ca_topic_score_gemma":0.003000252,"teacher_disagreement_score":0.44043562,"about_ca_system_score_codex":0.00030955614,"about_ca_system_score_gemma":0.00009409324,"threshold_uncertainty_score":0.736382},"labels":[],"label_agreement":null},{"id":"W2125408628","doi":"10.1128/iai.68.12.7159-7161.2000","title":"Repression of Hyphal Proteinase Expression by the Mitogen-Activated Protein (MAP) Kinase Phosphatase Cpp1p of <i>Candida albicans</i> Is Independent of the MAP Kinase Cek1p","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Candida albicans; Phosphatase; Protein kinase A; Mutant; Mitogen-activated protein kinase; DUSP6; Molecular biology; MAP kinase kinase kinase; Corpus albicans; Kinase; Mitogen-activated protein kinase kinase; Cell biology; Gene; Microbiology; Biochemistry; Protein phosphatase 2; Phosphorylation","score_opus":0.010477636913993239,"score_gpt":0.2520044334881813,"score_spread":0.24152679657418807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125408628","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640375,0.001216704,0.000028800287,0.00024082822,0.000093725524,0.0013574454,0.00013093924,0.000020351394,0.00050747226],"genre_scores_gemma":[0.9981958,0.00015813888,0.00002286126,0.0001020674,0.000020196352,0.00005510081,0.00003522673,0.000014535597,0.0013960178],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982603,0.00032512966,0.00053591514,0.00025955896,0.00043072097,0.0001883697],"domain_scores_gemma":[0.9983597,0.00007043711,0.0003692216,0.00089935603,0.00020697665,0.000094302886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052796275,0.00019868354,0.00037223805,0.00004534795,0.0002545097,0.000010395324,0.00014491497,0.00015922275,0.0008772344],"category_scores_gemma":[0.00019188618,0.0001149648,0.00017194604,0.0002728762,0.00043440727,0.00014704902,0.00009844521,0.00045073804,0.000003061044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002554749,0.00086172693,0.024354972,0.00043829047,0.000042090323,0.0000021528726,0.00060051447,0.0000024518536,0.9562316,0.000011352699,0.0014465062,0.013453573],"study_design_scores_gemma":[0.0017033945,0.00038310207,0.059072237,0.00073516567,0.000057738787,0.0000058168507,0.00022305494,0.000019810785,0.93251157,0.0000664164,0.0051198755,0.00010184168],"about_ca_topic_score_codex":0.005004849,"about_ca_topic_score_gemma":0.00006850389,"teacher_disagreement_score":0.034717266,"about_ca_system_score_codex":0.000047486927,"about_ca_system_score_gemma":0.000114339455,"threshold_uncertainty_score":0.96051013},"labels":[],"label_agreement":null},{"id":"W2125518460","doi":"10.1128/iai.70.6.3264-3270.2002","title":"Disruption of the Salmonella-Containing Vacuole Leads to Increased Replication of <i>Salmonella enterica</i> Serovar Typhimurium in the Cytosol of Epithelial Cells","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Salmonella enterica; Biology; Vacuole; Cytosol; Salmonella; Microbiology; Endosome; Effector; Mutant; Intracellular parasite; Cell biology; Intracellular; Virulence; Bacteria; Cytoplasm; Biochemistry; Genetics; Gene","score_opus":0.029655436669913954,"score_gpt":0.24497617993396428,"score_spread":0.21532074326405032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125518460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987015,0.00005582495,0.000013546929,0.00036269386,0.00008362178,0.0002415263,0.000019542153,0.000009423757,0.00051231723],"genre_scores_gemma":[0.9995278,0.00015727888,0.000009386111,0.00022800137,0.000037271566,0.000011551255,0.000008243462,9.597204e-7,0.000019472289],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99868417,0.00056174723,0.00037428254,0.00015789246,0.00009941253,0.00012248366],"domain_scores_gemma":[0.9991322,0.00032199878,0.00025599217,0.00019247655,0.00007086406,0.00002647526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007590778,0.00009349964,0.00021200762,0.000020854464,0.00008951578,0.000006824147,0.00018335256,0.00008284699,0.000048442398],"category_scores_gemma":[0.00015432946,0.00003534486,0.00008512255,0.00039944903,0.00009915693,0.0000529396,0.00006780085,0.00013440113,0.00000351622],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057980604,0.00013781567,0.1918011,0.00000990776,0.0000049578744,7.906358e-8,0.00042766458,0.00001317374,0.8011798,0.00003305791,0.000038864575,0.006295572],"study_design_scores_gemma":[0.0001475581,0.00035436777,0.8546284,0.000022571832,0.000011965122,0.0000062236136,0.00023350811,0.00010222974,0.14386168,0.00010358619,0.00046879446,0.000059130256],"about_ca_topic_score_codex":0.004336688,"about_ca_topic_score_gemma":0.00028750888,"teacher_disagreement_score":0.66282725,"about_ca_system_score_codex":0.000012994932,"about_ca_system_score_gemma":0.0000028309282,"threshold_uncertainty_score":0.65558046},"labels":[],"label_agreement":null},{"id":"W2125618705","doi":"10.1128/iai.69.12.7356-7364.2001","title":"Induction of Epithelial Cell Death Including Apoptosis by Enteropathogenic <i>Escherichia coli</i> Expressing Bundle-Forming Pili","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Metropolitan University; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Biology; Enteropathogenic Escherichia coli; Pilus; Microbiology; Programmed cell death; Virulence; Plasmid; Apoptosis; Virulence factor; Escherichia coli; Bacterial adhesin; Gene; Genetics","score_opus":0.025664178332630322,"score_gpt":0.28118247317847705,"score_spread":0.25551829484584676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125618705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99563915,0.00055660825,0.0020569477,0.000021620095,0.00014471573,0.00014029736,0.0000113071355,0.000018019906,0.001411319],"genre_scores_gemma":[0.99587536,0.0034795096,0.00022836486,0.000055642326,0.0000881371,0.00002382057,0.000031490006,0.00001535675,0.00020231503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909914,0.00017867459,0.00020838006,0.00019042342,0.000113305854,0.00021009317],"domain_scores_gemma":[0.99950343,0.000019299538,0.00011955136,0.00019009157,0.00010753707,0.00006009692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032574843,0.00014008135,0.0001520998,0.00005264186,0.00036050705,0.000030447149,0.000076370874,0.000113239556,0.000009405918],"category_scores_gemma":[0.00011174018,0.00013961534,0.00006496353,0.00014566,0.00010110701,0.000021992468,0.00022651457,0.00020082796,0.0000013455568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008116123,0.0001686342,0.032627918,0.00003037241,0.00003222575,1.2209718e-7,0.00011849813,0.000005394102,0.96463794,0.0000035721455,0.0000783947,0.0022157645],"study_design_scores_gemma":[0.00058705587,0.00043581115,0.013611458,0.00002511004,0.000020599366,0.0000072075077,0.00018087105,0.000076566736,0.9752585,0.000016205355,0.009626866,0.00015371612],"about_ca_topic_score_codex":0.00062982406,"about_ca_topic_score_gemma":0.000025424866,"teacher_disagreement_score":0.019016458,"about_ca_system_score_codex":0.000029230665,"about_ca_system_score_gemma":0.00003444738,"threshold_uncertainty_score":0.56933486},"labels":[],"label_agreement":null},{"id":"W2125633042","doi":"10.1128/iai.68.7.4217-4224.2000","title":"The Most Abundant Glycoprotein of Amebic Cyst Walls (Jacob) Is a Lectin with Five Cys-Rich, Chitin-Binding Domains","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; York University; National Institutes of Health; Harvard University","keywords":"Chitin; Lectin; Biology; Concanavalin A; Glycoprotein; Biochemistry; Mucin; Entamoeba histolytica; Microbiology","score_opus":0.007080679632247217,"score_gpt":0.24557591582908508,"score_spread":0.23849523619683788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125633042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98341596,0.00011447736,0.00007086197,0.00019285297,0.00008548569,0.0004844129,0.000016216269,0.000056977766,0.015562733],"genre_scores_gemma":[0.9930344,0.00052680174,0.000079258985,0.00011306172,0.000042114036,0.00004298282,0.000016593292,0.000017676239,0.0061271177],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991193,0.00009796996,0.00023810062,0.00016251732,0.00015974115,0.00022236328],"domain_scores_gemma":[0.9993017,0.00009699918,0.00011571227,0.0003014952,0.00010763533,0.00007651198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001694222,0.00017039277,0.00023247764,0.00010160565,0.0008880153,0.000041268,0.000038419777,0.000079012265,0.00058440794],"category_scores_gemma":[0.000041067182,0.00010576551,0.00006619462,0.0004408158,0.0002101354,0.000099249446,0.000023196048,0.00031709805,0.000049189017],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039263777,0.0038473476,0.48824638,0.0002966761,0.0028053676,0.00013934264,0.011890601,0.000069916685,0.022817327,0.0007856409,0.0012681846,0.46390685],"study_design_scores_gemma":[0.0109204,0.005946323,0.9027134,0.0006284008,0.0005307947,0.002731569,0.0013180701,0.0003813535,0.030664153,0.0003093988,0.043291368,0.0005647416],"about_ca_topic_score_codex":0.0077505508,"about_ca_topic_score_gemma":0.0005490886,"teacher_disagreement_score":0.4633421,"about_ca_system_score_codex":0.00010203838,"about_ca_system_score_gemma":0.000083254985,"threshold_uncertainty_score":0.9988569},"labels":[],"label_agreement":null},{"id":"W2126122440","doi":"10.1128/iai.01346-09","title":"Substitution of the <i>Bordetella pertussis</i> Lipid A Phosphate Groups with Glucosamine Is Required for Robust NF-κB Activation and Release of Proinflammatory Cytokines in Cells Expressing Human but Not Murine Toll-Like Receptor 4-MD-2-CD14","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Institut National de la Santé et de la Recherche Médicale","keywords":"Lipid A; Proinflammatory cytokine; Bordetella pertussis; TLR4; Biology; Pertussis toxin; HEK 293 cells; CD14; Lipopolysaccharide; Biochemistry; Inflammation; Receptor; Immunology; G protein; Bacteria","score_opus":0.014481499591129422,"score_gpt":0.22678500184110403,"score_spread":0.2123035022499746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126122440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984012,0.00008065346,0.00018653621,0.00007298614,0.0006530484,0.0005061416,0.000031420946,0.000028469285,0.000039523162],"genre_scores_gemma":[0.9993866,0.00019924586,0.00009526179,0.000027718224,0.000052328578,0.000046642177,0.00004656072,0.0000137287725,0.000131904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991139,0.00015562399,0.00036406296,0.0001899682,0.000023580622,0.00015283817],"domain_scores_gemma":[0.99911827,0.000108657216,0.00032501173,0.0002551887,0.00017463058,0.000018233039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031313713,0.0001681979,0.00026856735,0.00012413465,0.00042471173,0.000021525973,0.00006454403,0.00020672014,0.00006085202],"category_scores_gemma":[0.00009475721,0.000121437566,0.00005540193,0.00016847931,0.00026794878,0.00027313226,0.000060711784,0.00031972036,7.8203936e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006513989,0.0001933536,0.012235704,0.00012694446,0.00003856552,4.253361e-8,0.00033015176,0.000007491731,0.9843559,0.000122007536,0.00007695784,0.0018614717],"study_design_scores_gemma":[0.002080249,0.00026126136,0.068776675,0.00014202902,0.00003603998,0.000018174247,0.00008186197,0.000024415456,0.92421806,0.000017886396,0.004210065,0.00013327472],"about_ca_topic_score_codex":0.0015029045,"about_ca_topic_score_gemma":0.00059414905,"teacher_disagreement_score":0.060137846,"about_ca_system_score_codex":0.000019879935,"about_ca_system_score_gemma":0.000041009527,"threshold_uncertainty_score":0.49520802},"labels":[],"label_agreement":null},{"id":"W2126239408","doi":"10.1128/iai.68.12.6946-6953.2000","title":"Genetically Determined Disparate Innate and Adaptive Cell-Mediated Immune Responses to Pulmonary<i>Mycobacterium bovis</i>BCG Infection in C57BL/6 and BALB/c Mice","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; Canadian Lung Association","keywords":"Biology; BALB/c; C57BL/6; Immune system; Spleen; Immunology; Mycobacterium bovis; Interferon gamma; Tumor necrosis factor alpha; Cytokine; Lung; Antigen; Mycobacterium tuberculosis; Pathology; Tuberculosis; Internal medicine; Medicine","score_opus":0.018937970796862515,"score_gpt":0.29310685989262764,"score_spread":0.27416888909576514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126239408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660873,0.00064916885,0.000039008097,0.000944088,0.00007110043,0.00048460547,0.000012320367,0.00005480027,0.0011361666],"genre_scores_gemma":[0.9838425,0.014675113,0.00007923521,0.00072658714,0.000045349603,0.000053808988,0.000036029665,0.000017744536,0.00052363763],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99807996,0.000719336,0.0003860708,0.00032465413,0.00010464047,0.0003853582],"domain_scores_gemma":[0.9989433,0.00038892805,0.000055657674,0.00020903315,0.00009323882,0.0003097918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007107241,0.00021469046,0.0003998183,0.0003216686,0.00018363932,0.000040265804,0.000035007943,0.00018713875,0.00013322459],"category_scores_gemma":[0.00057167985,0.00017725027,0.00004074665,0.00036595005,0.00019527014,0.0001809226,0.00009456928,0.00049081224,0.000041166877],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0055752844,0.00034561678,0.69039094,0.000115033436,0.000053163603,0.00004282439,0.00039217537,0.000010915554,0.25757223,0.000006377049,0.00014689316,0.045348555],"study_design_scores_gemma":[0.0013072306,0.0013705096,0.9850963,0.00007544933,0.00003060131,0.00023608666,0.000022148699,0.0018617717,0.0032402214,0.00003693368,0.006539031,0.00018371812],"about_ca_topic_score_codex":0.008257162,"about_ca_topic_score_gemma":0.00065254123,"teacher_disagreement_score":0.29470536,"about_ca_system_score_codex":0.000064978885,"about_ca_system_score_gemma":0.000051004325,"threshold_uncertainty_score":0.9983469},"labels":[],"label_agreement":null},{"id":"W2126279424","doi":"10.1128/iai.01504-14","title":"Phosphoethanolamine Decoration of Neisseria gonorrhoeae Lipid A Plays a Dual Immunostimulatory and Protective Role during Experimental Genital Tract Infection","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vector Institute; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Biology; Microbiology; Lipid A; Neisseria gonorrhoeae; TLR2; TLR4; Proinflammatory cytokine; Innate immune system; Cathelicidin; Antimicrobial peptides; Inflammation; Immunology; Lipopolysaccharide; Immune system; Antimicrobial","score_opus":0.010645981666023268,"score_gpt":0.2643679944926059,"score_spread":0.25372201282658263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126279424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99707824,0.00090222416,0.0002605843,0.00001720375,0.00041178282,0.00061492407,0.000008134993,0.000104835985,0.00060206646],"genre_scores_gemma":[0.9994991,0.00014185834,0.000013146465,0.0000053089893,0.000061720544,0.00010930505,0.00003820666,0.000022571214,0.00010878077],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99848086,0.00053390133,0.00034589184,0.00035147535,0.000033303226,0.00025459906],"domain_scores_gemma":[0.99913037,0.00012528048,0.0001923848,0.00030782502,0.00020887003,0.000035249035],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005408423,0.00022783849,0.0002901643,0.00030558638,0.0005845811,0.0000425174,0.00004518033,0.00024985042,0.00019044544],"category_scores_gemma":[0.0004453969,0.0002300588,0.00007570962,0.0002510831,0.00033493052,0.0005616296,0.00011631137,0.00060101994,0.00003849034],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033249255,0.0005764933,0.06772624,0.000043090236,0.000110082095,1.4318607e-7,0.0009589228,0.000039695162,0.925787,0.00008045619,0.000004603115,0.0043407916],"study_design_scores_gemma":[0.0010644889,0.0006945205,0.5257802,0.000019259463,0.000017854985,0.00021940743,0.00015996111,0.00005010515,0.4715084,0.000041775165,0.00031134865,0.000132639],"about_ca_topic_score_codex":0.0040752036,"about_ca_topic_score_gemma":0.00007298325,"teacher_disagreement_score":0.45805398,"about_ca_system_score_codex":0.000114207614,"about_ca_system_score_gemma":0.00004779817,"threshold_uncertainty_score":0.93815255},"labels":[],"label_agreement":null},{"id":"W2126290991","doi":"10.1128/iai.00285-07","title":"Fate of a <i>Burkholderia pseudomallei</i> Lipopolysaccharide Mutant in the Mouse Macrophage Cell Line RAW 264.7: Possible Role for the O-Antigenic Polysaccharide Moiety of Lipopolysaccharide in Internalization and Intracellular Survival","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Burkholderia pseudomallei; Biology; Microbiology; Lipopolysaccharide; Intracellular; Melioidosis; Macrophage; Intracellular parasite; Interferon; Cell biology; Virology; Bacteria; Biochemistry; Immunology; In vitro","score_opus":0.017305281671855924,"score_gpt":0.2717873073740922,"score_spread":0.25448202570223627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126290991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985926,0.0011647331,0.01122666,0.00018295538,0.000287586,0.0010550283,0.00001709459,0.000028029028,0.00011191416],"genre_scores_gemma":[0.99669576,0.002742929,0.0001385841,0.00014383862,0.000087386245,0.00005161702,0.000012719055,0.000029468805,0.000097694196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981443,0.00018372266,0.0008562456,0.00026158223,0.00022306925,0.00033104236],"domain_scores_gemma":[0.99854374,0.00039634507,0.00035021282,0.00045049537,0.00017954194,0.00007968039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024644788,0.0002476882,0.0004790366,0.00039053973,0.00018930143,0.00004610951,0.00014583163,0.00019332381,0.00004011239],"category_scores_gemma":[0.00022015338,0.00017276323,0.00015547499,0.00050576177,0.00021643873,0.00019317518,0.00009633717,0.0005057578,8.243341e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005968187,0.00060407334,0.06410747,0.00021268043,0.000067889945,0.0000042135207,0.002027809,0.00008814877,0.92787194,0.00044163186,0.000008934254,0.0039683618],"study_design_scores_gemma":[0.003322545,0.0005649326,0.07066082,0.00012966692,0.0001663528,0.00008512216,0.0021492057,0.0029487435,0.9194244,0.00015441478,0.00021553355,0.00017823231],"about_ca_topic_score_codex":0.019700931,"about_ca_topic_score_gemma":0.0031729545,"teacher_disagreement_score":0.016527977,"about_ca_system_score_codex":0.000055011922,"about_ca_system_score_gemma":0.00006845142,"threshold_uncertainty_score":0.98682696},"labels":[],"label_agreement":null},{"id":"W2126342007","doi":"10.1128/iai.74.3.1883-1889.2006","title":"Hypophysectomy and Neurointermediate Pituitary Lobectomy Reduce Serum Immunoglobulin M (IgM) and IgG and Intestinal IgA Responses to<i>Salmonella enterica</i>Serovar Typhimurium Infection in Rats","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pituitary Gland Disorders and Treatments","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital; University of Manitoba","funders":"","keywords":"Biology; Immune system; Salmonella enterica; Salmonella; Immunoglobulin G; Internal medicine; Endocrinology; Immunoglobulin A; Hypophysectomy; Immunoglobulin M; Antibody; Spleen; Intestinal mucosa; Immunology; Microbiology; Hormone; Medicine; Bacteria","score_opus":0.01342256701000868,"score_gpt":0.261746597065895,"score_spread":0.2483240300558863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126342007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691457,0.001366104,0.000031234566,0.0004223066,0.00017707338,0.0004565344,0.000013808694,0.0000763538,0.00054201036],"genre_scores_gemma":[0.997393,0.0019421832,0.000100563135,0.00026981818,0.00006357246,0.000025311898,0.0000328141,0.000020938653,0.00015180961],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987866,0.0001888004,0.00030555515,0.00035293828,0.00010393328,0.00026215406],"domain_scores_gemma":[0.9993958,0.000118242206,0.00007867621,0.00019646411,0.00006003608,0.00015079782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020543404,0.00026844937,0.00034088438,0.0003140486,0.0002163048,0.00006978886,0.00002689104,0.0000920511,0.00001597556],"category_scores_gemma":[0.0001153801,0.00024291598,0.000038358976,0.00027860975,0.00016141619,0.00024032098,0.00012913637,0.00030909007,0.0000062235176],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011303512,0.00038747856,0.9813462,0.000096100295,0.000034058932,0.00006068448,0.00016872301,0.0000023278142,0.0108360415,0.000011030264,0.0001116363,0.0058153737],"study_design_scores_gemma":[0.003231073,0.0012345924,0.99155116,0.00016587778,0.00006770176,0.0008690129,0.00003752335,0.000077281344,0.0017554433,0.00031905246,0.00048592288,0.00020536076],"about_ca_topic_score_codex":0.011412078,"about_ca_topic_score_gemma":0.0006666235,"teacher_disagreement_score":0.010745454,"about_ca_system_score_codex":0.000047838785,"about_ca_system_score_gemma":0.000036912257,"threshold_uncertainty_score":0.995171},"labels":[],"label_agreement":null},{"id":"W2126403521","doi":"10.1128/iai.00466-12","title":"Leptospira interrogans Catalase Is Required for Resistance to H <sub>2</sub> O <sub>2</sub> and for Virulence","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Conseil Régional, Île-de-France","keywords":"Leptospira interrogans; Catalase; Leptospira; Microbiology; Biology; Virulence; Bacteria; Innate immune system; Pathogenic bacteria; Reactive oxygen species; Oxidative stress; Immune system; Serotype; Immunology; Biochemistry; Gene; Genetics","score_opus":0.027115533371485718,"score_gpt":0.285440647481139,"score_spread":0.2583251141096533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126403521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934072,0.0011315087,0.0030866074,0.00039576652,0.0005504458,0.00094799575,0.00024249383,0.00008171044,0.00015626878],"genre_scores_gemma":[0.9979016,0.00060249015,0.00006884193,0.0006085863,0.000074979595,0.0003231455,0.00012895947,0.000028425371,0.00026292386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848324,0.00013680443,0.0003134372,0.0003341346,0.000048346978,0.0006840239],"domain_scores_gemma":[0.99897635,0.0002708446,0.00011984968,0.00031735015,0.00017417799,0.00014142932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006995343,0.00024551863,0.00030353255,0.0001879215,0.00081226585,0.0000679708,0.00013491398,0.00028888858,0.000020356665],"category_scores_gemma":[0.00053773454,0.00023839556,0.000115924675,0.00019552017,0.00030321654,0.00050864613,0.00017342792,0.00035130134,0.0001066168],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059868325,0.00016974201,0.0063193375,0.000114592745,0.00008565565,1.864252e-7,0.0014577975,1.2271653e-7,0.9656151,0.00029205065,0.005985634,0.019361112],"study_design_scores_gemma":[0.0015425327,0.00055515626,0.028558161,0.00006792769,0.00003520804,0.00001700619,0.00017153105,0.0000029378537,0.8963087,0.0001664397,0.07231151,0.00026287785],"about_ca_topic_score_codex":0.00011832779,"about_ca_topic_score_gemma":0.00026216608,"teacher_disagreement_score":0.06930638,"about_ca_system_score_codex":0.00008885594,"about_ca_system_score_gemma":0.000043305354,"threshold_uncertainty_score":0.9721489},"labels":[],"label_agreement":null},{"id":"W2126563569","doi":"10.1128/iai.71.11.6499-6509.2003","title":"Recombinant<i>Leishmania major</i>Secreting Biologically Active Granulocyte-Macrophage Colony-Stimulating Factor Survives Poorly in Macrophages In Vitro and Delays Disease Development in Mice","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Biology; In vitro; Macrophage; Recombinant DNA; Granulocyte macrophage colony-stimulating factor; Leishmania; Colony-stimulating factor; Immunology; Leishmania major; Granulocyte; Microbiology; Leishmaniasis; Biological activity; Cytokine; Cell biology; Biochemistry; Haematopoiesis; Parasite hosting","score_opus":0.025982493006041458,"score_gpt":0.2941376889790943,"score_spread":0.2681551959730529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126563569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975885,0.0009046821,0.000028816185,0.00014224503,0.00007402356,0.0007189065,0.0000061517585,0.000035840505,0.00050081743],"genre_scores_gemma":[0.9981592,0.0011827594,0.00038363913,0.000093896626,0.000008349077,0.000077400226,0.000019800002,0.000017230415,0.000057705667],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977055,0.00080298836,0.0005040844,0.00037451327,0.00017073694,0.00044218067],"domain_scores_gemma":[0.9989375,0.0005391086,0.00011760944,0.00013785582,0.00010354013,0.00016440748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009933739,0.00024738887,0.00046885104,0.00041155552,0.00026000888,0.00005090368,0.000055580836,0.00011872403,0.000035830566],"category_scores_gemma":[0.0022598545,0.00022074499,0.000038293256,0.00050637935,0.00017186333,0.00021312934,0.00012960842,0.00070242863,0.0000042543024],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089336105,0.0003022838,0.91193515,0.0001448143,0.00003001603,0.00011572559,0.0017744886,0.0000068239615,0.076215014,0.000016158123,0.0000027783453,0.008563411],"study_design_scores_gemma":[0.002905707,0.00021015758,0.9768403,0.00019704794,0.000009068871,0.000016134516,0.0005345037,0.00017033407,0.018637028,0.000073002804,0.00019811284,0.00020859875],"about_ca_topic_score_codex":0.002973194,"about_ca_topic_score_gemma":0.0020714954,"teacher_disagreement_score":0.064905174,"about_ca_system_score_codex":0.00032677187,"about_ca_system_score_gemma":0.00011623805,"threshold_uncertainty_score":0.90017194},"labels":[],"label_agreement":null},{"id":"W2126594199","doi":"10.1128/iai.72.7.4188-4199.2004","title":"Responses of Well-Differentiated Airway Epithelial Cell Cultures from Healthy Donors and Patients with Cystic Fibrosis to <i>Burkholderia cenocepacia</i> Infection","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto General Hospital","funders":"Hospital for Sick Children","keywords":"Biology; Burkholderia cenocepacia; Microbiology; Mucus; Cystic fibrosis; Burkholderia; Vacuole; Epithelium; Respiratory epithelium; Cell culture; Secretion; Bacteria; Goblet cell; Cytoplasm; Cell biology","score_opus":0.008703372962993151,"score_gpt":0.27015867249266656,"score_spread":0.2614552995296734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126594199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99800646,0.00013415326,0.00070760923,0.00014647796,0.00012910296,0.0005739315,0.000111161724,0.00006242259,0.00012868477],"genre_scores_gemma":[0.9983874,0.0005084111,0.00075302366,0.00011430378,0.0000350218,0.000020848438,0.00011430812,0.000017945875,0.000048762377],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988537,0.0001713225,0.00026693803,0.0002402611,0.00024684405,0.00022095272],"domain_scores_gemma":[0.9990539,0.00015448962,0.00011804698,0.00021579688,0.00023421308,0.00022358482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000134467,0.00018422566,0.00030701404,0.00020076173,0.00023634676,0.000040163533,0.00003213027,0.00009201245,0.00006317805],"category_scores_gemma":[0.00029609355,0.0001409222,0.00004020027,0.00032065593,0.00015353231,0.00017526755,0.000061258535,0.00025696465,0.00000990847],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013146433,0.0011730039,0.6553783,0.00041965506,0.00010115138,0.0000018806729,0.0013588563,0.00012258902,0.3245848,0.000011349754,0.0001450682,0.0035569097],"study_design_scores_gemma":[0.0043858704,0.0037342706,0.90224457,0.00024107665,0.00006352871,0.000005440086,0.000060632345,0.000008148658,0.08784585,0.00007466304,0.0011977189,0.00013821293],"about_ca_topic_score_codex":0.017706588,"about_ca_topic_score_gemma":0.0011008417,"teacher_disagreement_score":0.24686632,"about_ca_system_score_codex":0.000100734214,"about_ca_system_score_gemma":0.000076281685,"threshold_uncertainty_score":0.98883456},"labels":[],"label_agreement":null},{"id":"W2126784673","doi":"10.1128/iai.72.8.4689-4698.2004","title":"In Vitro Models of Tissue Penetration and Destruction by <i>Porphyromonas gingivalis</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Porphyromonas gingivalis; Biology; Proinflammatory cytokine; Microbiology; Connective tissue; Interleukin 8; Epithelium; Streptococcus gordonii; Matrigel; Inflammation; Immunology; In vitro; Bacteria","score_opus":0.017838547402008076,"score_gpt":0.2897702491231144,"score_spread":0.2719317017211063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126784673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805087,0.000320703,0.00079740444,0.000052211126,0.00014398618,0.00009519369,0.000020995096,0.000013143417,0.00050546817],"genre_scores_gemma":[0.9993476,0.0003263037,0.000089604706,0.000030169167,0.000013667179,0.0000042008387,0.000039031904,0.000004355679,0.00014505452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995425,0.000096037635,0.00013641636,0.00009677321,0.00004097185,0.00008730614],"domain_scores_gemma":[0.99980474,0.000015581629,0.00004089992,0.000078671444,0.000036061385,0.000024036242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015983256,0.00006067392,0.00010072894,0.00007740786,0.00009539962,0.000023356371,0.00002520977,0.00010264399,0.000049013393],"category_scores_gemma":[0.000017949735,0.00006312344,0.000013139021,0.00010944518,0.00010721249,0.00034691155,0.000028255907,0.00018250286,0.000005796111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060163507,0.000054969303,0.00930517,0.000025995769,0.000007045698,0.0000019175498,0.00013286437,0.000044372457,0.9874273,0.0003422461,0.000074594296,0.002523373],"study_design_scores_gemma":[0.0010314857,0.00013667367,0.14196944,0.000018981824,0.0000070328165,0.0001563827,0.000040542393,0.00007163235,0.84936744,0.006365471,0.00072788354,0.00010703372],"about_ca_topic_score_codex":0.010945006,"about_ca_topic_score_gemma":0.0005685766,"teacher_disagreement_score":0.13805985,"about_ca_system_score_codex":0.000026363445,"about_ca_system_score_gemma":0.0000148323825,"threshold_uncertainty_score":0.9956412},"labels":[],"label_agreement":null},{"id":"W2126839756","doi":"10.1128/iai.71.8.4828.2003","title":"Cloned Shiga Toxin 2 B Subunit Induces Apoptosis in Ramos Burkitt's Lymphoma B Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Shiga toxin; Biology; Pentamer; Apoptosis; Protein subunit; Molecular biology; Shigella dysenteriae; Shiga-like toxin; Cell biology; Biochemistry; Escherichia coli","score_opus":0.015391245223170206,"score_gpt":0.2670068663363882,"score_spread":0.251615621113218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126839756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994418,0.0004190778,0.000055497,0.000046380435,0.00013014028,0.0001573753,0.0000026036446,0.000014446727,0.004756463],"genre_scores_gemma":[0.997355,0.001978994,0.00007559699,0.00013786963,0.00003142351,0.000039976665,0.000011427764,0.000011030271,0.0003586961],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902904,0.0003311874,0.00014827575,0.00018293296,0.00008630536,0.00022226936],"domain_scores_gemma":[0.9995789,0.000029765906,0.000041696752,0.00021599274,0.000071323426,0.00006235389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038986313,0.00012745053,0.00012973718,0.0000762354,0.00017986195,0.000039258655,0.00006793499,0.00013570026,0.000029082432],"category_scores_gemma":[0.0002889212,0.00012468545,0.00004203969,0.0002226307,0.00010576533,0.000009442644,0.000102139165,0.0001437713,0.000007388371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046675475,0.00020571378,0.028413113,0.00002132189,0.000041689196,6.5859336e-7,0.00012829302,0.0000065771765,0.96704024,0.000082593346,0.00028093613,0.0037321835],"study_design_scores_gemma":[0.0009674315,0.00026197924,0.114299156,0.000012328433,0.0000070877704,0.000005183788,0.00022450417,0.000010244941,0.84664464,0.00007725027,0.037300088,0.00019013276],"about_ca_topic_score_codex":0.0010046499,"about_ca_topic_score_gemma":0.00036387844,"teacher_disagreement_score":0.12039563,"about_ca_system_score_codex":0.000027633487,"about_ca_system_score_gemma":0.000060234506,"threshold_uncertainty_score":0.50845253},"labels":[],"label_agreement":null},{"id":"W2127216716","doi":"10.1128/iai.01399-07","title":"Chemical Attenuation of <i>Plasmodium berghei</i> Sporozoites Induces Sterile Immunity in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; McGill University","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Plasmodium berghei; Parasitemia; Biology; Plasmodium (life cycle); Virology; Plasmodium falciparum; In vitro; Malaria; Immunity; In vivo; Apicomplexa; Plasmodium yoelii; Parasite hosting; Immunology; Microbiology; Immune system; Biochemistry; Genetics","score_opus":0.024671663887817656,"score_gpt":0.27534691857333937,"score_spread":0.2506752546855217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127216716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966728,0.00015480521,0.00003606179,0.00033473817,0.000053451276,0.00021347831,0.0000035903217,0.00002241527,0.0025086664],"genre_scores_gemma":[0.99925244,0.00039993954,0.00003942047,0.00009458339,0.0000335214,0.000015211145,0.000034144974,0.0000060873044,0.00012462997],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999266,0.000121281475,0.00022502597,0.00009681019,0.00014682747,0.00014402586],"domain_scores_gemma":[0.9994942,0.00009066608,0.00006652464,0.00015991014,0.00011723638,0.000071444694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030342204,0.000085585154,0.00021438012,0.0001349142,0.00008294098,0.0000069723847,0.000041524465,0.000097367716,0.00011516119],"category_scores_gemma":[0.00020769914,0.000078408826,0.00004382555,0.00021498832,0.00013551123,0.00013685216,0.00004798393,0.00038081154,0.0000073412934],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073082105,0.0005333388,0.19374001,0.000091057904,0.000037863374,0.0000070537285,0.00064906187,0.0000019155098,0.7998157,0.000081106904,0.000109664856,0.004202393],"study_design_scores_gemma":[0.0021022777,0.00022019833,0.854436,0.00005339741,0.000014594384,0.00008162018,0.00009704161,0.00013845497,0.14230457,0.000049122576,0.00042710404,0.00007561337],"about_ca_topic_score_codex":0.004940576,"about_ca_topic_score_gemma":0.000085057814,"teacher_disagreement_score":0.66069597,"about_ca_system_score_codex":0.00004260173,"about_ca_system_score_gemma":0.00008477794,"threshold_uncertainty_score":0.7468706},"labels":[],"label_agreement":null},{"id":"W2127318907","doi":"10.1128/iai.00168-10","title":"Interleukin-17-Mediated Control of Parasitemia in Experimental<i>Trypanosoma congolense</i>Infection in Mice","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Parasitemia; Biology; Trypanosoma; Trypanosomiasis; Spleen; Immunology; Antibody; Interleukin 17; Interleukin 10; Immune system; Virology; Malaria","score_opus":0.016778269047717672,"score_gpt":0.315001698752163,"score_spread":0.2982234297044453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127318907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966529,0.00019154735,0.000015625012,0.00013661823,0.00018470058,0.000435485,0.000008125196,0.000039418923,0.0023355593],"genre_scores_gemma":[0.9992755,0.0003582926,0.00001417011,0.00011732342,0.00003340917,0.00007273074,0.000023965782,0.00001152424,0.00009307196],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894524,0.00017708725,0.00035709344,0.00016781,0.00014872395,0.00020402532],"domain_scores_gemma":[0.9992579,0.00025977255,0.0000982603,0.00018787885,0.00012383933,0.00007234705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025548376,0.00013488339,0.0003459558,0.0003652846,0.000060647842,0.000015034835,0.00003674423,0.00013948874,0.0003284712],"category_scores_gemma":[0.00067507057,0.00012593203,0.000055097298,0.00034228977,0.00020436956,0.00015877065,0.000049110353,0.0007328656,0.000015020259],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024035055,0.0003754756,0.53344214,0.000037675076,0.000025977866,0.000007371284,0.00039998113,0.0000010346102,0.46461508,0.000012573991,0.00019833226,0.00064399623],"study_design_scores_gemma":[0.0036956272,0.00041977857,0.9127219,0.00010849206,0.000009864041,0.000047858786,0.0001425324,0.00018157027,0.080034584,0.000012474776,0.0025340873,0.00009125128],"about_ca_topic_score_codex":0.00689459,"about_ca_topic_score_gemma":0.00495237,"teacher_disagreement_score":0.3845805,"about_ca_system_score_codex":0.00009378557,"about_ca_system_score_gemma":0.00004908951,"threshold_uncertainty_score":0.9997186},"labels":[],"label_agreement":null},{"id":"W2127344664","doi":"10.1128/iai.02029-05","title":"T-Cell Expression Cloning of<i>Porphyromonas gingivalis</i>Genes Coding for T Helper-Biased Immune Responses during Infection","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"National Center for Research Resources; National Institute of Dental and Craniofacial Research","keywords":"Porphyromonas gingivalis; Biology; Antigen; Immune system; T cell; Microbiology; Antibody; T helper cell; Immunology; Bacteria; Genetics","score_opus":0.024125615721393278,"score_gpt":0.29701509575324736,"score_spread":0.2728894800318541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127344664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99668646,0.00097349175,0.0008441841,0.000014442733,0.0005342887,0.0002649209,0.000047285383,0.000089740664,0.0005451818],"genre_scores_gemma":[0.99749726,0.00034117073,0.00012529739,0.0000074945838,0.0001098461,0.000031838325,0.00008654154,0.000019296556,0.0017812501],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987785,0.00034684266,0.00035034743,0.00020039488,0.00008302856,0.00024087605],"domain_scores_gemma":[0.9992147,0.00020877348,0.00017121327,0.00021474512,0.0001559442,0.00003462311],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005140135,0.00015107046,0.00023734155,0.00021870059,0.00074916944,0.00006930417,0.00006502241,0.00018672312,0.0001400201],"category_scores_gemma":[0.00013977647,0.00015109361,0.00013080436,0.00018628516,0.00013049915,0.00025689718,0.00009645541,0.00026925252,0.000013055313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033560648,0.00010660745,0.19362895,0.00016060515,0.000013567295,0.0000025228835,0.000054054315,0.00003165974,0.80512017,0.000037237067,0.00013444985,0.00037457858],"study_design_scores_gemma":[0.0007759062,0.000091868336,0.40348488,0.00007042122,0.000012087332,0.0000353132,0.000020309493,0.000025289548,0.5940214,0.000053718286,0.0013054232,0.0001034017],"about_ca_topic_score_codex":0.0067997635,"about_ca_topic_score_gemma":0.00024659993,"teacher_disagreement_score":0.21109879,"about_ca_system_score_codex":0.00004470876,"about_ca_system_score_gemma":0.00002876412,"threshold_uncertainty_score":0.99981403},"labels":[],"label_agreement":null},{"id":"W2127435143","doi":"10.1128/iai.74.5.2522-2536.2006","title":"Toll-Like Receptor 4 Contributes to Colitis Development but Not to Host Defense during <i>Citrobacter rodentium</i> Infection in Mice","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Children's Hospital","funders":"Canadian Institutes of Health Research; CH.I.L.D. Foundation; Michael Smith Health Research BC; University of British Columbia; Life Sciences Research Foundation","keywords":"Citrobacter rodentium; Biology; TLR4; Microbiology; Innate immune system; Colitis; Immunology; Toll-like receptor; Enteropathogenic Escherichia coli; Inflammation; Lipopolysaccharide; Intestinal mucosa; Pathogen; Immune system; Virulence; Medicine; Gene","score_opus":0.008094131296537526,"score_gpt":0.24975319684158973,"score_spread":0.2416590655450522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127435143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982836,0.00008643685,0.00040445483,0.00016075815,0.00021743639,0.00039082908,0.000010194174,0.000024742883,0.00042154588],"genre_scores_gemma":[0.99800956,0.00030064015,0.00018847462,0.00035197774,0.000076859615,0.000121862264,0.00004132826,0.000013345678,0.00089597324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898577,0.00014167598,0.00022997247,0.0002493909,0.000098927994,0.00029423612],"domain_scores_gemma":[0.99954545,0.000021200538,0.00004007054,0.0001500685,0.0001647438,0.000078436686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002776856,0.00014987725,0.00015318146,0.00014444352,0.0002702434,0.0000664612,0.00005493751,0.00010389425,0.00001038564],"category_scores_gemma":[0.00019663974,0.00016038156,0.000037346636,0.00024580274,0.00003801003,0.000012187334,0.0002529112,0.0001555174,0.000025230866],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002445896,0.0001039622,0.18932551,0.000028335731,0.00003203906,9.869057e-7,0.000077296965,0.000029639781,0.80913776,0.000008571364,0.000657255,0.00035403727],"study_design_scores_gemma":[0.00044526785,0.000082197716,0.624835,0.000022306676,0.0000033160773,0.0000040658447,0.000017765668,0.0000016946697,0.34557742,0.0000026838254,0.028887557,0.00012073278],"about_ca_topic_score_codex":0.005218117,"about_ca_topic_score_gemma":0.013173855,"teacher_disagreement_score":0.46356037,"about_ca_system_score_codex":0.00012664382,"about_ca_system_score_gemma":0.00005398262,"threshold_uncertainty_score":0.7888267},"labels":[],"label_agreement":null},{"id":"W2127508944","doi":"10.1128/iai.01824-06","title":"Role for <i>sagA</i> and <i>siaA</i> in Quorum Sensing and Iron Regulation in <i>Streptococcus pyogenes</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus pyogenes; Quorum sensing; Biology; Virulence; Mutant; Streptolysin; Microbiology; Regulation of gene expression; Gene; Gene expression; Gene product; Pathogen; Psychological repression; Genetics; Cell biology; Bacterial protein; Bacteria; Staphylococcus aureus","score_opus":0.016063757462338065,"score_gpt":0.2863409362132014,"score_spread":0.2702771787508633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127508944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965771,0.00034162484,0.00045415835,0.00010280368,0.00007193241,0.0007556935,0.0000033948063,0.00003929172,0.0016540352],"genre_scores_gemma":[0.9992744,0.00024210439,0.00016654468,0.00013475993,0.000036664547,0.00002186496,0.000023381672,0.000013152978,0.000087160246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924463,0.000039141483,0.0002528783,0.00020314334,0.000056377794,0.00020385746],"domain_scores_gemma":[0.9995753,0.00011268985,0.000059155085,0.00012777057,0.00004371708,0.00008137163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035578499,0.00013612429,0.00020457296,0.00022525038,0.00014439122,0.000027138696,0.00000853592,0.00012525488,0.000006100648],"category_scores_gemma":[0.000053490552,0.00013031263,0.000030483307,0.00022139683,0.00007357105,0.0001301231,0.00002863027,0.00016200413,9.462289e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016539909,0.00016803974,0.8636561,0.000055192657,0.000013048438,0.0000035399369,0.00019380418,0.0000054347565,0.041555975,0.00004737323,0.000015242858,0.09412084],"study_design_scores_gemma":[0.0032710116,0.0002985702,0.97601014,0.000099134246,0.000033398683,0.0000994208,0.00016599896,0.00045826528,0.016961109,0.00033276764,0.0021527275,0.00011746619],"about_ca_topic_score_codex":0.0030607658,"about_ca_topic_score_gemma":0.0035564383,"teacher_disagreement_score":0.11235402,"about_ca_system_score_codex":0.00007680827,"about_ca_system_score_gemma":0.000016360153,"threshold_uncertainty_score":0.5313995},"labels":[],"label_agreement":null},{"id":"W2127604250","doi":"10.1128/iai.68.11.6402-6410.2000","title":"Identification of<i>tgh-2</i>, a Filarial Nematode Homolog of<i>Caenorhabditis elegans daf-7</i>and Human Transforming Growth Factor β, Expressed in Microfilarial and Adult Stages of<i>Brugia malayi</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"GDF15 and Related Biomarkers","field":"Medicine","cited_by":163,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Leverhulme Trust; York University","keywords":"Biology; Brugia malayi; Caenorhabditis elegans; Peptide sequence; Cell biology; Schneider 2 cells; Gene; Molecular biology; Genetics; RNA interference; Immunology; RNA; Helminths","score_opus":0.006530472058908767,"score_gpt":0.24127206667173506,"score_spread":0.2347415946128263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127604250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985803,0.0002386417,0.00006757598,0.00007387196,0.00009588228,0.00036823354,0.00007589268,0.000020764837,0.00047884526],"genre_scores_gemma":[0.99809414,0.0016939539,0.000040776762,0.000018178791,0.0000244317,0.000007866011,0.00004291421,0.000012475746,0.000065240136],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988506,0.0001388237,0.00057182147,0.0001762485,0.00012057093,0.00014193477],"domain_scores_gemma":[0.99942327,0.00006744762,0.00017680916,0.00015821843,0.00011271834,0.0000615282],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002592785,0.00014819873,0.00038634645,0.00020604943,0.00010607522,0.000014522994,0.000040573887,0.00023187681,0.000066434135],"category_scores_gemma":[0.000060923616,0.00013451342,0.00006985822,0.00020633593,0.0002732843,0.00018283939,0.00001793181,0.00027189258,4.5630605e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047922012,0.00023244493,0.13257715,0.0004914373,0.000093734794,0.000003192298,0.00135929,9.3804044e-7,0.8619214,0.00016310245,0.000024073286,0.0026539601],"study_design_scores_gemma":[0.0038003777,0.00037918775,0.5999762,0.00022992308,0.00012494501,0.000065859036,0.00018384973,0.000019313366,0.39486432,0.000110656474,0.00012100483,0.00012440348],"about_ca_topic_score_codex":0.004085531,"about_ca_topic_score_gemma":0.00010701541,"teacher_disagreement_score":0.467399,"about_ca_system_score_codex":0.000014501333,"about_ca_system_score_gemma":0.000032768876,"threshold_uncertainty_score":0.6176128},"labels":[],"label_agreement":null},{"id":"W2127736630","doi":"10.1128/iai.00737-06","title":"Genome-Wide Expression Analysis of <i>Burkholderia pseudomallei</i> Infection ina Hamster Model of Acute Melioidosis","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Los Alamos National Laboratory; Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Burkholderia pseudomallei; Melioidosis; Biology; Microbiology; Gene; Virulence; Gene expression; Bacteria; Biochemistry; Genetics","score_opus":0.0176699527027532,"score_gpt":0.25840839712410046,"score_spread":0.24073844442134726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127736630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825064,0.00010732604,0.01336811,0.000061944986,0.00017545478,0.0003216971,0.000035692894,0.000085708205,0.0033376517],"genre_scores_gemma":[0.9977408,0.0010520082,0.00056436256,0.000080594284,0.00005717777,0.000041584368,0.00013619322,0.000023727634,0.000303567],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985023,0.00012154769,0.0006668551,0.0002665067,0.00022947419,0.0002133182],"domain_scores_gemma":[0.99860346,0.00006731191,0.0003750914,0.0004938366,0.00036707742,0.00009319969],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036012894,0.00023710477,0.00069290237,0.0010771726,0.00020645367,0.00002445152,0.000047341968,0.00023326476,0.00018153746],"category_scores_gemma":[0.000048332793,0.00021482084,0.0004010589,0.0014428113,0.00015579068,0.0002856217,0.000087525186,0.0002742267,0.0000031359975],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016846013,0.0006222668,0.34421843,0.0001122382,0.00092404726,6.963933e-7,0.00013846488,0.0021971047,0.6509477,0.000057729456,0.00017449829,0.0004383537],"study_design_scores_gemma":[0.0013337317,0.00033192738,0.7915052,0.00007665548,0.0034375526,0.000014780167,0.000022246524,0.005294764,0.19710585,0.000092714494,0.0005976712,0.00018687817],"about_ca_topic_score_codex":0.005618515,"about_ca_topic_score_gemma":0.00018244992,"teacher_disagreement_score":0.45384187,"about_ca_system_score_codex":0.000071647904,"about_ca_system_score_gemma":0.000055402816,"threshold_uncertainty_score":0.876014},"labels":[],"label_agreement":null},{"id":"W2127804839","doi":"10.1128/iai.00702-09","title":"The 58-Kilodalton Major Virulence Factor of <i>Francisella tularensis</i> Is Required for Efficient Utilization of Iron","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Umeå Universitet; Vetenskapsrådet","keywords":"Francisella tularensis; Biology; Virulence; Virulence factor; Microbiology; Kilodalton; Tularemia; Francisella; Antigen; Immunology; Biochemistry","score_opus":0.02432775276235279,"score_gpt":0.2964501701135863,"score_spread":0.27212241735123355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127804839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946558,0.0005981322,0.003971527,0.00006865645,0.00013311507,0.00025429393,0.00004593463,0.0000044575213,0.00026808254],"genre_scores_gemma":[0.9986265,0.001123129,0.00003821181,0.000050362745,0.000034865225,0.0000057479406,0.00002717718,0.000005418121,0.000088630644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993907,0.00006396807,0.00020106179,0.00012259095,0.000093059985,0.000128603],"domain_scores_gemma":[0.9993917,0.00002936584,0.000104091196,0.00023123942,0.0002099163,0.000033717806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025389218,0.00008011506,0.00011009479,0.000026893043,0.00017565086,0.000014880691,0.00007231792,0.0000915424,0.0000107034675],"category_scores_gemma":[0.00014604187,0.000060765484,0.0000680916,0.00009064033,0.00011274295,0.0000037395926,0.000030820363,0.00005210551,5.616576e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029104174,0.000072429546,0.0004386516,0.000034851786,0.000010446707,2.0342029e-8,0.000072475836,0.0000075017656,0.9671289,0.00007822244,0.000116884476,0.031748574],"study_design_scores_gemma":[0.00056238205,0.00069965457,0.033419523,0.000015344784,0.000009701145,0.0000014187134,0.00001802633,0.0002751551,0.95331573,0.000086841435,0.011521036,0.00007516579],"about_ca_topic_score_codex":0.00009251409,"about_ca_topic_score_gemma":0.000018893626,"teacher_disagreement_score":0.03298087,"about_ca_system_score_codex":0.0000072914563,"about_ca_system_score_gemma":0.000029897112,"threshold_uncertainty_score":0.24779445},"labels":[],"label_agreement":null},{"id":"W2127819569","doi":"10.1128/iai.73.2.1204-1208.2005","title":"<i>Salmonella</i> -Induced Filament Formation Is a Dynamic Phenotype Induced by Rapidly Replicating <i>Salmonella enterica</i> Serovar Typhimurium in Epithelial Cells","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Salmonella enterica; Salmonella; Biology; Microbiology; Virulence; Phenotype; Serotype; Multiplicity of infection; Intracellular; Enterobacteriaceae; HeLa; Bacteria; Virology; Virus; Cell; Cell biology; Gene; Escherichia coli; Genetics","score_opus":0.018835775219966554,"score_gpt":0.245053504286554,"score_spread":0.22621772906658746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127819569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970975,0.00015395904,0.00003159066,0.0012103779,0.00019788601,0.00032117474,0.000036697213,0.00010570145,0.000845097],"genre_scores_gemma":[0.9972285,0.0005911824,0.000046191373,0.0017821919,0.000113976756,0.000035582707,0.00010985014,0.0000035705068,0.000088954504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981738,0.00037385742,0.0005447298,0.0003830987,0.0001343702,0.0003901928],"domain_scores_gemma":[0.9992017,0.00019340463,0.00026823083,0.0001585761,0.0000659078,0.000112188216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060200144,0.0002521044,0.00032104994,0.000039495557,0.00027415005,0.00006280651,0.00016344365,0.0002326162,0.00015230224],"category_scores_gemma":[0.000050889645,0.00013783372,0.00009510616,0.00040422296,0.000041417312,0.00029892314,0.00011272512,0.0003892819,0.000091355294],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000057701294,0.00017950124,0.0027378274,0.0000090388785,0.000009812929,3.9069127e-7,0.00028279918,0.000003832991,0.915939,0.000004217274,0.0005624481,0.08021345],"study_design_scores_gemma":[0.0014078404,0.001180211,0.33963302,0.000070788934,0.000041527994,0.000050002844,0.0005628781,0.0031568361,0.6086479,0.0003814731,0.04392023,0.000947284],"about_ca_topic_score_codex":0.003015109,"about_ca_topic_score_gemma":0.0006072968,"teacher_disagreement_score":0.3368952,"about_ca_system_score_codex":0.00011642329,"about_ca_system_score_gemma":0.0000081467415,"threshold_uncertainty_score":0.5620696},"labels":[],"label_agreement":null},{"id":"W2127841605","doi":"10.1128/iai.73.12.8179-8187.2005","title":"Ectophosphorylation of CD36 Regulates Cytoadherence of <i>Plasmodium falciparum</i> to Microvascular Endothelium under Flow Conditions","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada; University of Calgary","funders":"","keywords":"Biology; CD36; Cell biology; Kinase; Phosphorylation; Cell adhesion; Phosphatase; Adhesion; Molecular biology; Biochemistry; Chemistry; Cell; Receptor","score_opus":0.015664549476707323,"score_gpt":0.2600529112571304,"score_spread":0.2443883617804231,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127841605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724346,0.00064211997,0.0006946976,0.00007705918,0.0002316148,0.00029454133,0.00010390275,0.00003976169,0.0006728229],"genre_scores_gemma":[0.9992764,0.00005727164,0.000110594796,0.000056553214,0.000011340132,0.000025178108,0.00007853384,0.000007483172,0.0003766739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991543,0.0001987518,0.00033604342,0.0001374531,0.000035259804,0.00013816617],"domain_scores_gemma":[0.9993041,0.00011491097,0.00014356241,0.00027508408,0.00014008113,0.000022258324],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017435523,0.000114872484,0.000222744,0.00012546271,0.00015789925,0.000007595164,0.00008214368,0.00008748095,0.00087958964],"category_scores_gemma":[0.00004685106,0.000114194314,0.00009166557,0.00014871308,0.00014427416,0.00009877157,0.000065323955,0.00009512494,0.00006197781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068136476,0.00021181488,0.013173167,0.0000455165,0.00014210693,6.8340015e-8,0.000270701,0.00078304665,0.9827311,0.0004978331,0.0010602829,0.0010162401],"study_design_scores_gemma":[0.00076244655,0.0001436277,0.15228406,0.00006362276,0.00005095781,0.00001815191,0.00011909175,0.00003214586,0.8400125,0.00018664302,0.0062204525,0.00010631685],"about_ca_topic_score_codex":0.0010559842,"about_ca_topic_score_gemma":0.00013357952,"teacher_disagreement_score":0.1427186,"about_ca_system_score_codex":0.000032843567,"about_ca_system_score_gemma":0.0000337602,"threshold_uncertainty_score":0.9630889},"labels":[],"label_agreement":null},{"id":"W2127865724","doi":"10.1128/iai.00137-15","title":"Bistable Expression of CsgD in Salmonella enterica Serovar Typhimurium Connects Virulence to Persistence","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of Saskatchewan","funders":"","keywords":"Virulence; Biology; Salmonella enterica; Biofilm; Microbiology; Salmonella; Pathogen; Transcriptome; Gene; Bacteria; Serotype; Type three secretion system; Pathogenicity island; Gene expression; Genetics","score_opus":0.07453383692765372,"score_gpt":0.2587111652888586,"score_spread":0.1841773283612049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127865724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979416,0.0001175486,0.000016939672,0.00023460524,0.00014468463,0.00009986187,0.00000521744,0.000023470191,0.00141607],"genre_scores_gemma":[0.9994864,0.000102547165,0.000048472353,0.0002541533,0.000028558317,0.000007115924,0.000007757413,5.650139e-7,0.00006443614],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920565,0.00023014267,0.00018334635,0.00015651768,0.000069217494,0.0001551554],"domain_scores_gemma":[0.99955976,0.00013079826,0.00006858142,0.00006188962,0.00007309035,0.00010590684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040917686,0.00008476047,0.00017168044,0.000023154053,0.000064314285,0.000012436027,0.0000890101,0.000073279516,0.000059411857],"category_scores_gemma":[0.00021923434,0.000038988623,0.000031251304,0.00027903807,0.00005185886,0.00009604445,0.00009477873,0.00010156385,0.000015792346],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000117710915,0.00011123266,0.3318669,0.000008678714,0.0000025799422,0.0000010722334,0.00040028384,0.000020239842,0.6619176,0.000023293522,0.0003619422,0.0051684626],"study_design_scores_gemma":[0.00021896114,0.00057160173,0.9554007,0.000053069147,0.0000036891902,0.00001296637,0.0007368198,0.000056062934,0.034207188,0.0002532914,0.008351905,0.00013371675],"about_ca_topic_score_codex":0.002979431,"about_ca_topic_score_gemma":0.00038773826,"teacher_disagreement_score":0.62771046,"about_ca_system_score_codex":0.000023337507,"about_ca_system_score_gemma":0.000007083025,"threshold_uncertainty_score":0.45040283},"labels":[],"label_agreement":null},{"id":"W2128132956","doi":"10.1128/iai.73.1.219-225.2005","title":"Trigger Factor in<i>Streptococcus mutans</i>Is Involved in Stress Tolerance, Competence Development, and Biofilm Formation","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; University of Florida","keywords":"Streptococcus mutans; Biology; Biofilm; Microbiology; Mutant; Virulence; Paraquat; Bacteria; Sucrose; Gene; Biochemistry; Genetics","score_opus":0.03075973705203298,"score_gpt":0.2853289100117526,"score_spread":0.2545691729597196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128132956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982219,0.00012303976,0.00012427247,0.000074142576,0.00007727269,0.0005316622,0.000009365775,0.000043233744,0.0007951335],"genre_scores_gemma":[0.99931806,0.00026618826,0.00013127601,0.00011456315,0.000011255672,0.000081519116,0.00003400049,0.000007027985,0.00003611891],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99927866,0.000035526424,0.00028458,0.00016067456,0.00007802596,0.00016255536],"domain_scores_gemma":[0.99964845,0.000027343394,0.000065097614,0.00012577324,0.000059641785,0.000073685376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072544004,0.0001429695,0.00020956995,0.00026748385,0.00012885711,0.000032281874,0.000018641847,0.00009583046,0.000049734288],"category_scores_gemma":[0.000029557219,0.00012591026,0.00002504926,0.00041467012,0.000060017355,0.00030322804,0.000026288068,0.00022614056,0.000009401907],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043489024,0.00039374913,0.9835472,0.00006562122,0.000018152585,0.0000066902317,0.0011351599,0.0000100845655,0.0017708294,0.000034780634,0.0000036153124,0.012970609],"study_design_scores_gemma":[0.0040005655,0.00015189711,0.9602635,0.00025337207,0.0000099499175,0.000020898151,0.00017636783,0.00007389041,0.033820573,0.00007711438,0.0010345734,0.00011730436],"about_ca_topic_score_codex":0.002039608,"about_ca_topic_score_gemma":0.0019383847,"teacher_disagreement_score":0.032049745,"about_ca_system_score_codex":0.00017006967,"about_ca_system_score_gemma":0.00006564958,"threshold_uncertainty_score":0.5134471},"labels":[],"label_agreement":null},{"id":"W2128305300","doi":"10.1128/iai.71.10.5910-5920.2003","title":"Iron Superoxide Dismutases Targeted to the Glycosomes of<i>Leishmania chagasi</i>Are Important for Survival","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Amastigote; Biology; Superoxide dismutase; Superoxide; Biochemistry; Leishmania; Reactive oxygen species; Gene; Enzyme; Parasite hosting","score_opus":0.031595458058275565,"score_gpt":0.30570824194312696,"score_spread":0.2741127838848514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128305300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562013,0.0007207623,0.00018345015,0.0014099836,0.00024292113,0.00081947126,0.000047077927,0.00004385907,0.0009123434],"genre_scores_gemma":[0.99818105,0.001058346,0.00010223514,0.00022219296,0.000057805923,0.000098012875,0.000018492196,0.00001764778,0.00024420122],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988956,0.00018757957,0.0002871811,0.00016569311,0.00021365864,0.00025032586],"domain_scores_gemma":[0.9989678,0.0002632509,0.00008733848,0.0003237535,0.0002474837,0.00011037256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073200435,0.00014323115,0.00031856456,0.00010344356,0.00034213497,0.000025304678,0.000059506452,0.000053310352,0.00004782755],"category_scores_gemma":[0.0019859676,0.00009532117,0.000102527316,0.0002554386,0.000121671794,0.0000902481,0.000059769347,0.00019345389,0.000005536326],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064867834,0.0006629749,0.9334328,0.0004177004,0.00032511164,0.00000805543,0.0013376283,0.000007791355,0.05032045,0.0019720315,0.0068309237,0.004035828],"study_design_scores_gemma":[0.001326177,0.0009120774,0.8742706,0.00006619093,0.00007545616,0.00003823114,0.0013722269,0.000017726197,0.04530091,0.000131501,0.076346666,0.00014224063],"about_ca_topic_score_codex":0.000831726,"about_ca_topic_score_gemma":0.00062281283,"teacher_disagreement_score":0.06951574,"about_ca_system_score_codex":0.00004813585,"about_ca_system_score_gemma":0.00005325406,"threshold_uncertainty_score":0.38870844},"labels":[],"label_agreement":null},{"id":"W2128429807","doi":"10.1128/iai.00297-06","title":"<i>Burkholderia cenocepacia</i> ZmpB Is a Broad-Specificity Zinc Metalloprotease Involved in Virulence","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Foundation","keywords":"Biology; Microbiology; Virulence; Metalloproteinase; Burkholderia cenocepacia; Lactoferrin; Proteases; Escherichia coli; Molecular biology; Biochemistry; Enzyme; Gene","score_opus":0.021124355538268882,"score_gpt":0.2902091514015425,"score_spread":0.26908479586327366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128429807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332803,0.0007805831,0.00050652435,0.00029410483,0.00009498431,0.00048277128,0.000014714253,0.00008524562,0.004413029],"genre_scores_gemma":[0.9981249,0.000449755,0.0005397771,0.00023819128,0.00007175521,0.00004206643,0.000027428066,0.00001451118,0.0004916297],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987492,0.0001468902,0.00029837797,0.00024991072,0.0002644788,0.00029117407],"domain_scores_gemma":[0.9992565,0.000109469634,0.00007036673,0.00031763388,0.00012320558,0.00012283651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039813167,0.00016373368,0.00028249517,0.00020209477,0.00016518068,0.000056372664,0.00005855158,0.00009091956,0.00042190243],"category_scores_gemma":[0.00035294515,0.0001507549,0.00007009136,0.00047541282,0.00020579815,0.00028362652,0.00008106146,0.00046020283,0.00004603783],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091572135,0.0013501436,0.32099447,0.00036197618,0.000050806215,0.00004573832,0.00034680098,0.000023363807,0.65705353,0.00046453584,0.0021998843,0.016193029],"study_design_scores_gemma":[0.0023764968,0.00036975523,0.8617252,0.00017645494,0.000026401209,0.000041193085,0.0001193718,0.0005479703,0.08395728,0.0016702064,0.048748545,0.00024109277],"about_ca_topic_score_codex":0.015716547,"about_ca_topic_score_gemma":0.0015933971,"teacher_disagreement_score":0.5730963,"about_ca_system_score_codex":0.00013511223,"about_ca_system_score_gemma":0.000073765324,"threshold_uncertainty_score":0.9908379},"labels":[],"label_agreement":null},{"id":"W2128606135","doi":"10.1128/iai.71.6.3068-3075.2003","title":"Role of Phosphoglucomutase of <i>Stenotrophomonas</i> <i>maltophilia</i> in Lipopolysaccharide Biosynthesis, Virulence, and Antibiotic Resistance","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of Calgary; Health Sciences Centre; Queen's University","funders":"Cystic Fibrosis Foundation","keywords":"Stenotrophomonas maltophilia; Biology; Microbiology; Phosphoglucomutase; Virulence; Mutant; Pseudomonas aeruginosa; Bacteria; Gene; Enzyme; Biochemistry; Genetics","score_opus":0.0035937663556117124,"score_gpt":0.20452580654444077,"score_spread":0.20093204018882907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128606135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960846,0.0019708588,0.000033777593,0.0000070273804,0.00006886494,0.0000989688,0.00002045844,0.0000044323806,0.0017110311],"genre_scores_gemma":[0.99615455,0.0036003005,0.0001301816,0.000023938108,0.000011280623,0.00000305277,0.0000056637787,0.000007944944,0.00006308438],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993103,0.00011265513,0.00024118886,0.00016029709,0.00005604377,0.000119518605],"domain_scores_gemma":[0.99954665,0.000022650436,0.00012251965,0.00020734593,0.00006648578,0.00003437731],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024067858,0.00010564531,0.00017541411,0.00006647086,0.00007074606,0.00000950673,0.000040247014,0.00009827119,0.000009553567],"category_scores_gemma":[0.00015659835,0.00010441802,0.00004003133,0.00012925029,0.0001626801,0.000010275734,0.00003296759,0.00008204929,4.2249692e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010870378,0.000118210555,0.04033247,0.000058875616,0.000013143955,3.0066704e-7,0.000027395636,0.000002004433,0.957597,0.0008073343,0.000007649947,0.0009269029],"study_design_scores_gemma":[0.00034977501,0.00012178044,0.08296816,0.000056501885,0.00001057506,0.000007750448,0.000053273703,0.0000020096716,0.9113086,0.00017990162,0.004842527,0.00009918006],"about_ca_topic_score_codex":0.0005805381,"about_ca_topic_score_gemma":0.00046208786,"teacher_disagreement_score":0.046288446,"about_ca_system_score_codex":0.000008451176,"about_ca_system_score_gemma":0.000035350553,"threshold_uncertainty_score":0.42580432},"labels":[],"label_agreement":null},{"id":"W2128670970","doi":"10.1128/iai.72.10.5868-5876.2004","title":"Dysregulated Inflammatory Response to<i>Candida albicans</i>in a C5-Deficient Mouse Strain","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Université Laval; Université du Québec; Institute for Biological Sciences; McGill University; Institut National de la Recherche Scientifique","funders":"","keywords":"Biology; Candida albicans; Congenic; Immunology; Microbiology; Corpus albicans; Complement component 5; Tumor necrosis factor alpha; Inflammation; Complement system; Immune system; Gene; Genetics","score_opus":0.010654614162693093,"score_gpt":0.26894824286307956,"score_spread":0.25829362870038647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128670970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99793684,0.000058483,0.00023719486,0.00055959687,0.00006605751,0.00036028062,0.000010317169,0.00007850668,0.0006927343],"genre_scores_gemma":[0.9987198,0.000044442346,0.000055411834,0.00045874817,0.000015790061,0.000013098644,0.000010052253,0.000010873618,0.00067178265],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990317,0.00016024374,0.00025241222,0.00019255548,0.00015178422,0.00021126626],"domain_scores_gemma":[0.99937606,0.000053700158,0.000038957405,0.00030368305,0.00007681613,0.00015078181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076150167,0.0001245169,0.0002021279,0.00019184823,0.00012912747,0.000022192375,0.000034232635,0.00009837987,0.000105044106],"category_scores_gemma":[0.0003611685,0.00011423235,0.00005462268,0.0003253937,0.000102309015,0.00008593554,0.000033387467,0.0002996633,0.00003110662],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0059476737,0.0007111982,0.3553401,0.0001049923,0.00003444984,0.000046539943,0.0024918385,0.00029458883,0.62887347,0.00026499285,0.00007863828,0.005811508],"study_design_scores_gemma":[0.0019216214,0.00043225507,0.9871573,0.00009378009,0.000010253271,0.000021482687,0.000309741,0.000015262414,0.0071561756,0.00010257562,0.0026608182,0.00011875968],"about_ca_topic_score_codex":0.0014442464,"about_ca_topic_score_gemma":0.0016298719,"teacher_disagreement_score":0.63181716,"about_ca_system_score_codex":0.00024423588,"about_ca_system_score_gemma":0.00016945209,"threshold_uncertainty_score":0.465826},"labels":[],"label_agreement":null},{"id":"W2128671556","doi":"10.1128/iai.73.8.4982-4992.2005","title":"Characterization of the <i>cciIR</i> Quorum-Sensing System in <i>Burkholderia cenocepacia</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; University of Calgary","funders":"Coalition for Epidemic Preparedness Innovations; Wellcome Trust; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Biology; Bioreporter; Burkholderia cenocepacia; Mutant; Quorum sensing; Swarming motility; Protease; Gene; Microbiology; Genetics; Reporter gene; Gene expression; Molecular biology; Biochemistry; Virulence","score_opus":0.006712915774728959,"score_gpt":0.20534481432552554,"score_spread":0.19863189855079658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128671556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99866617,0.0000348725,0.000053709093,0.00009072093,0.00029090626,0.00010630142,0.000006676366,0.000010112122,0.0007405527],"genre_scores_gemma":[0.9995229,0.000091285656,0.000039395545,0.00014146276,0.00012179317,7.430328e-7,0.000027165675,0.000008093557,0.00004711908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944925,0.00010627089,0.00018542886,0.0001078173,0.000044308723,0.00010692726],"domain_scores_gemma":[0.9996439,0.000004062647,0.000101479425,0.00018558046,0.000045046443,0.000019935032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016454261,0.00008275966,0.00009892185,0.000028778975,0.00010711825,0.000019778043,0.00003665558,0.0001028144,0.0000029176047],"category_scores_gemma":[0.000022341213,0.00006751107,0.00003723963,0.00010294076,0.00005254935,0.000009454595,0.000064891785,0.00008597074,0.0000012531912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024002778,0.000020121022,0.0046594962,0.000017906872,0.0000059450103,7.873168e-8,0.000057529865,0.0000035048845,0.9885014,0.000039562547,0.000011543528,0.0066588935],"study_design_scores_gemma":[0.00026492777,0.00003514871,0.10893768,0.000047852565,0.0000057749626,0.000024864112,0.00003630149,0.000054397933,0.8782981,8.229613e-7,0.012218014,0.0000761248],"about_ca_topic_score_codex":0.00032002712,"about_ca_topic_score_gemma":0.00025888914,"teacher_disagreement_score":0.110203326,"about_ca_system_score_codex":0.000017031069,"about_ca_system_score_gemma":0.000019451096,"threshold_uncertainty_score":0.27530217},"labels":[],"label_agreement":null},{"id":"W2128703655","doi":"10.1128/iai.74.1.305-312.2006","title":"Identification of a Surface Protein of <i>Streptococcus suis</i> and Evaluation of Its Immunogenic and Protective Capacity in Pigs","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Université de Montréal","funders":"","keywords":"Streptococcus suis; Biology; Serotype; Antiserum; Virulence; Microbiology; Antibody; Virology; Recombinant DNA; Bacterial outer membrane; Bacteria; Homology (biology); Gene; Escherichia coli; Genetics","score_opus":0.05182290246783378,"score_gpt":0.31806769427606174,"score_spread":0.26624479180822797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128703655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972574,0.0005476533,0.00003609672,0.000027119795,0.000017302746,0.0019130001,0.000013665429,0.000009671779,0.00017805204],"genre_scores_gemma":[0.99966276,0.00015341997,0.000036113546,0.0000020191744,0.0000057369725,0.000109045766,0.0000057697766,0.000005283465,0.000019837347],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99908686,0.00019017258,0.00037691844,0.00013037863,0.00014325563,0.00007242717],"domain_scores_gemma":[0.9991326,0.000038508795,0.00024987062,0.00015313592,0.00039531794,0.000030569747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007042478,0.0000924323,0.0002284328,0.00013277556,0.000052244166,0.0000057239577,0.000013711405,0.000079186684,0.00002465279],"category_scores_gemma":[0.00021019878,0.00008493112,0.000034093067,0.00023995833,0.00013317721,0.00015609997,0.000024442554,0.00012755296,5.935407e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009866859,0.00047087774,0.40853512,0.0001883646,0.00007020859,6.2809185e-8,0.0004870214,0.000030328682,0.57959,0.00005380092,5.3090065e-7,0.010474976],"study_design_scores_gemma":[0.0016465272,0.00026865958,0.6494461,0.00012199274,0.000079519436,0.000008043387,0.00006220283,0.00080425915,0.3474116,0.000105990555,0.000005829943,0.000039230705],"about_ca_topic_score_codex":0.0021451449,"about_ca_topic_score_gemma":0.00026176107,"teacher_disagreement_score":0.240911,"about_ca_system_score_codex":0.00006686426,"about_ca_system_score_gemma":0.000049191025,"threshold_uncertainty_score":0.34633905},"labels":[],"label_agreement":null},{"id":"W2128743925","doi":"10.1128/iai.01104-10","title":"Antibiotic Treatment Alters the Colonic Mucus Layer and Predisposes the Host to Exacerbated <i>Citrobacter rodentium</i> -Induced Colitis","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":376,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Citrobacter rodentium; Mucus; Microbiology; Biology; Colitis; Antibiotics; Metronidazole; Goblet cell; Intestinal mucosa; Immunology; Medicine; Epithelium; Internal medicine","score_opus":0.030637134511767392,"score_gpt":0.2627107348169551,"score_spread":0.23207360030518773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128743925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985323,0.00021138547,0.00002282663,0.0002733732,0.00018600865,0.00038401684,0.000011260613,0.0000167705,0.0003620441],"genre_scores_gemma":[0.9980148,0.0009832409,0.000010475873,0.0006812273,0.00004602452,0.000013258815,0.000012791858,0.0000115278635,0.0002266277],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993404,0.00018508291,0.00011141413,0.00015798896,0.000031522475,0.0001735759],"domain_scores_gemma":[0.9995853,0.000015627535,0.00004530541,0.00024625222,0.000044082994,0.00006348428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001646285,0.00011741937,0.00009318906,0.000022647777,0.0003626351,0.000040155028,0.000061295555,0.000077592376,0.000017290124],"category_scores_gemma":[0.00002010308,0.000069528345,0.00003524053,0.00007290391,0.00007609971,0.0000057683887,0.00007783476,0.000088180714,0.000009309013],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001377343,0.00013607295,0.044865325,0.000013655244,0.000080961276,7.973478e-7,0.0011241919,4.594955e-7,0.9513735,0.000031066167,0.00044789727,0.0017883199],"study_design_scores_gemma":[0.00040673558,0.00078359275,0.8611442,0.000009159913,0.000034075598,0.000043583706,0.000110581255,0.000004257055,0.1273682,0.000004099856,0.010001646,0.00008988573],"about_ca_topic_score_codex":0.0055413744,"about_ca_topic_score_gemma":0.0028606101,"teacher_disagreement_score":0.8240053,"about_ca_system_score_codex":0.000022223569,"about_ca_system_score_gemma":0.000037856695,"threshold_uncertainty_score":0.8376938},"labels":[],"label_agreement":null},{"id":"W2128747019","doi":"10.1128/iai.00515-10","title":"Phylogenetic Analysis of<i>Chlamydia trachomatis</i>Tarp and Correlation with Clinical Phenotype","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Chlamydia trachomatis; Phylogenetic tree; Phenotype; Phylogenetics; Virology; Pathogen; Genetics; Sequence analysis; Microbiology; Gene","score_opus":0.019279326794834375,"score_gpt":0.31680229085253553,"score_spread":0.2975229640577012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128747019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99673265,0.00024148171,0.0010885505,0.000023594723,0.0003398494,0.00017452877,0.000008514814,0.000034437147,0.0013563806],"genre_scores_gemma":[0.9993749,0.00023947629,0.00009885081,0.000012342155,0.00001903953,0.000010199104,0.000042477997,0.000007201897,0.00019548145],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989918,0.00035244832,0.0002752912,0.00021788751,0.00003392909,0.00012866806],"domain_scores_gemma":[0.9990176,0.00032796396,0.0001289596,0.0003129078,0.00018677786,0.000025779133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007133026,0.00010364948,0.000271579,0.0003268039,0.00023196389,0.000017434717,0.00004464651,0.00020658993,0.00034000774],"category_scores_gemma":[0.00031863575,0.00008466918,0.000062428575,0.00055187783,0.00058920804,0.00011690615,0.00003801112,0.00074301765,0.000023094986],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009152817,0.00021603571,0.8466275,0.000008471041,0.0007232733,1.8555855e-7,0.00015730233,0.000031200503,0.11806123,0.00025512182,0.000015842665,0.033812314],"study_design_scores_gemma":[0.0005664748,0.00021672096,0.99273026,0.0000042879665,0.00041266668,0.000035753703,0.000031388634,0.00010721858,0.0046220743,0.00006362136,0.0011183942,0.000091156966],"about_ca_topic_score_codex":0.0014025935,"about_ca_topic_score_gemma":0.0009654548,"teacher_disagreement_score":0.14610274,"about_ca_system_score_codex":0.000007638562,"about_ca_system_score_gemma":0.000034270415,"threshold_uncertainty_score":0.37228465},"labels":[],"label_agreement":null},{"id":"W2128768741","doi":"10.1128/iai.72.2.1174-1180.2004","title":"An <i>msbB</i> Homologue Carried in Plasmid pO157 Encodes an Acyltransferase Involved in Lipid A Biosynthesis in <i>Escherichia coli</i> O157:H7","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Guelph","funders":"","keywords":"Complementation; Escherichia coli; Biology; Mutant; Lipid A; Plasmid; Gene; Acyltransferase; Enterobacteriaceae; Microbiology; Biochemistry; Molecular biology; Bacteria; Genetics","score_opus":0.015314558774531495,"score_gpt":0.2768303465982916,"score_spread":0.2615157878237601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128768741","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868125,0.00032265647,0.00008721179,0.00014365613,0.000075597396,0.00035249145,0.000018303737,0.000027329288,0.00029153263],"genre_scores_gemma":[0.9970521,0.0021184892,0.00020202862,0.00036961847,0.000048986178,0.00011799399,0.00006111377,0.000022440547,0.000007256707],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982025,0.0005762839,0.00032046146,0.00038916137,0.00011699828,0.00039459314],"domain_scores_gemma":[0.99934787,0.000043029457,0.00004465051,0.00036971105,0.00006547391,0.00012927785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006669927,0.00023733922,0.00028413796,0.00022482472,0.00013882347,0.000048976068,0.0001709889,0.00025166932,0.000007180985],"category_scores_gemma":[0.00025601068,0.0002449716,0.000049683975,0.00050443143,0.00022065935,0.000047374753,0.00009077298,0.00046717352,0.000001864539],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003097931,0.00077863695,0.1784611,0.000040720348,0.000018769417,0.00001584706,0.0007521291,0.00035101015,0.818633,0.00003177737,0.0000059114855,0.0006012789],"study_design_scores_gemma":[0.0036309566,0.0013527927,0.5787696,0.000095933356,0.000010165156,0.000010235408,0.0010838549,0.00019453595,0.41307038,0.00020303724,0.0010853672,0.0004931396],"about_ca_topic_score_codex":0.015343808,"about_ca_topic_score_gemma":0.10339512,"teacher_disagreement_score":0.40556264,"about_ca_system_score_codex":0.00009573686,"about_ca_system_score_gemma":0.00019100067,"threshold_uncertainty_score":0.9989652},"labels":[],"label_agreement":null},{"id":"W2128769489","doi":"10.1128/iai.68.8.4811-4814.2000","title":"<i>Pseudomonas aeruginosa</i>Exoenzyme S Induces Transcriptional Expression of Proinflammatory Cytokines and Chemokines","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Proinflammatory cytokine; Exoenzyme; Chemokine; Biology; Immunology; Tumor necrosis factor alpha; Inflammation; Interleukin; Cytokine; Microbiology; Biochemistry","score_opus":0.01534793579481717,"score_gpt":0.2741843765420986,"score_spread":0.2588364407472814,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128769489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997044,0.0010150252,0.000026456572,0.00017369838,0.00004714848,0.00023106916,0.000008407036,0.00004684764,0.0014073476],"genre_scores_gemma":[0.99777,0.0014345675,0.00030410537,0.000038909413,0.00006332413,0.000020590736,0.000016763077,0.000009062553,0.00034268462],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99924815,0.0000665677,0.00021036567,0.00014117287,0.00020023917,0.00013352485],"domain_scores_gemma":[0.9995625,0.00006903265,0.000046353955,0.00014025808,0.000085474756,0.00009640329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017290929,0.00011271318,0.00020510609,0.0001019504,0.00012933214,0.000017402932,0.000029675713,0.00006684398,0.0004167176],"category_scores_gemma":[0.00008804069,0.000091687645,0.000040401002,0.00012889205,0.00024214068,0.0002391532,0.000021103211,0.00020738597,0.0000041223047],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037714402,0.00014059279,0.024230048,0.00024139961,0.00001585381,0.0000020153102,0.00023014582,0.0000026615262,0.95124024,0.000048891863,0.00011902054,0.023351977],"study_design_scores_gemma":[0.0011962533,0.00026159192,0.57191545,0.0002065646,0.000019391691,0.00013131443,0.000052617313,0.000032532913,0.414321,0.00015956226,0.011616817,0.00008686513],"about_ca_topic_score_codex":0.00022672948,"about_ca_topic_score_gemma":0.000015639278,"teacher_disagreement_score":0.54768544,"about_ca_system_score_codex":0.000015708674,"about_ca_system_score_gemma":0.000042025957,"threshold_uncertainty_score":0.45627657},"labels":[],"label_agreement":null},{"id":"W2128896236","doi":"10.1128/iai.01265-07","title":"Activation of the Cpx Envelope Stress Response Down-Regulates Expression of Several Locus of Enterocyte Effacement-Encoded Genes in Enteropathogenic <i>Escherichia coli</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Intimin; Biology; Pathogenicity island; Enteropathogenic Escherichia coli; Operon; Virulence; Secretion; Escherichia coli; Bacterial adhesin; Microbiology; Gene; Transcription (linguistics); Cell biology; Genetics; Enterobacteriaceae; Biochemistry","score_opus":0.013195947588273558,"score_gpt":0.24950529472053112,"score_spread":0.23630934713225757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128896236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99915177,0.00033130022,0.00015974163,0.000023046881,0.000048473183,0.00022339326,0.000015992167,0.0000034146433,0.000042867538],"genre_scores_gemma":[0.9985305,0.0012688792,0.0000725183,0.000016385688,0.000009622173,0.000017759425,0.000010319927,0.000006673929,0.00006734032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988372,0.0005223297,0.0002673674,0.00012505076,0.00013487556,0.00011321144],"domain_scores_gemma":[0.99937123,0.000042318858,0.00018546429,0.00024157605,0.00013737034,0.000022010694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030346148,0.00010370218,0.00016640437,0.000057930967,0.00009762648,0.0000032819848,0.00010335033,0.000079170844,0.000006617712],"category_scores_gemma":[0.0001861297,0.000079987745,0.00006274828,0.00016309643,0.0002188806,0.000012318195,0.00024011571,0.000109790584,1.3029904e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010752763,0.00015736656,0.1501985,0.00005481971,0.00002577045,1.4198278e-7,0.00032760226,0.00017583475,0.8478168,8.8338163e-7,0.000017040667,0.00014995695],"study_design_scores_gemma":[0.00051683595,0.0001789459,0.3847843,0.00005276695,0.000003548982,0.0000013180718,0.000067902154,0.00002594348,0.6141749,0.0000020034033,0.0001503053,0.000041219253],"about_ca_topic_score_codex":0.00039613576,"about_ca_topic_score_gemma":0.00008139319,"teacher_disagreement_score":0.2345858,"about_ca_system_score_codex":0.000018184663,"about_ca_system_score_gemma":0.0000645605,"threshold_uncertainty_score":0.32618055},"labels":[],"label_agreement":null},{"id":"W2128903394","doi":"10.1128/iai.72.12.7172-7182.2004","title":"Distinct Roles of Reactive Nitrogen and Oxygen Species To Control Infection with the Facultative Intracellular Bacterium<i>Francisella tularensis</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"Vetenskapsrådet","keywords":"Francisella tularensis; Biology; Facultative; Francisella; Intracellular parasite; Microbiology; Bacteria; Tularemia; Intracellular; Reactive oxygen species; Virulence; Ecology; Biochemistry; Genetics","score_opus":0.006106966187105655,"score_gpt":0.2018857472220228,"score_spread":0.19577878103491714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128903394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99572444,0.00041262322,0.0023821138,0.00036656746,0.00007771679,0.00045862724,0.00008267541,0.000040923936,0.00045432276],"genre_scores_gemma":[0.9993666,0.0000985218,0.000016461556,0.00016465642,0.000016520919,0.000022806069,0.00012628904,0.00000964883,0.00017853016],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992928,0.0001851897,0.00015326178,0.00017909109,0.00002877466,0.00016087903],"domain_scores_gemma":[0.999513,0.000054155542,0.000121453755,0.00014285956,0.00014180117,0.000026739428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016477397,0.00017851782,0.00022423462,0.00007304744,0.00033787312,0.000030532665,0.000052372652,0.00008983116,0.000042139454],"category_scores_gemma":[0.000039747363,0.000115118404,0.000050784776,0.00015760324,0.00032638325,0.000113738024,0.000049942933,0.00020962133,0.000019532252],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056643825,0.00015468863,0.016119258,0.000031902207,0.0005002354,0.0000014005728,0.0033849706,0.000018827812,0.9765397,0.000761608,0.00036361167,0.0015573957],"study_design_scores_gemma":[0.0033569331,0.00061107805,0.6125325,0.0000660825,0.00035969162,0.000039335126,0.001435595,7.478283e-7,0.32961562,0.00027055285,0.051420834,0.0002910316],"about_ca_topic_score_codex":0.0010591047,"about_ca_topic_score_gemma":0.0009929776,"teacher_disagreement_score":0.646924,"about_ca_system_score_codex":0.0000320937,"about_ca_system_score_gemma":0.00001673762,"threshold_uncertainty_score":0.4694392},"labels":[],"label_agreement":null},{"id":"W2129028798","doi":"10.1128/iai.00025-15","title":"The Serine Protease Autotransporter Pic Modulates Citrobacter rodentium Pathogenesis and Its Innate Recognition by the Host","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Child and Family Research Institute","funders":"Canadian Institutes of Health Research; University of British Columbia","keywords":"Citrobacter rodentium; Biology; Microbiology; Shigella flexneri; Enteroaggregative Escherichia coli; Mutant; Pathogenic Escherichia coli; Pathogen; Virulence; Innate immune system; TLR2; Enterobacteriaceae; Escherichia coli; Immunology; Immune system; Genetics; Gene","score_opus":0.02241754374212346,"score_gpt":0.2579905809899025,"score_spread":0.23557303724777906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129028798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722844,0.0017249141,0.000074142634,0.00043479103,0.0000754818,0.0002704881,0.000019618437,0.000012701495,0.00015941852],"genre_scores_gemma":[0.99636537,0.0028753928,0.0000075872827,0.000114465394,0.000047037327,0.000083467705,0.000044844328,0.00000822428,0.00045362976],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993924,0.00017666031,0.00009774922,0.00012386545,0.0000749885,0.00013433535],"domain_scores_gemma":[0.99958247,0.00001396667,0.000039474857,0.00014369051,0.00016485047,0.00005554412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039337017,0.00009298133,0.0000626105,0.000013625502,0.0003656629,0.00006323804,0.000052162723,0.00005530541,0.0000036495535],"category_scores_gemma":[0.0001352919,0.00005627994,0.000023943143,0.00006725478,0.00012127546,0.000011674319,0.000093697665,0.00012402858,0.0000027316753],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015480221,0.0000718138,0.027591884,0.0000288303,0.000103806655,6.83662e-7,0.00016250864,0.0000024835672,0.9606352,0.000006028284,0.0006454429,0.010596536],"study_design_scores_gemma":[0.0012062534,0.00058082014,0.7781042,0.000021136815,0.00004940864,0.000038336562,0.00019191064,0.0004656189,0.15714495,0.00018642639,0.0617199,0.00029103828],"about_ca_topic_score_codex":0.00019237922,"about_ca_topic_score_gemma":0.00013064055,"teacher_disagreement_score":0.8034902,"about_ca_system_score_codex":0.000007906213,"about_ca_system_score_gemma":0.000022095423,"threshold_uncertainty_score":0.28124204},"labels":[],"label_agreement":null},{"id":"W2129040062","doi":"10.1128/iai.01068-08","title":"Nonhematopoietic Cells Control the Outcome of Infection with<i>Listeria monocytogenes</i>in a Nucleotide Oligomerization Domain 1-Dependent Manner","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vetenskapsrådet; Karolinska Institutet; University of Toronto; Deutsche Forschungsgemeinschaft","keywords":"NOD1; Biology; Listeria monocytogenes; Microbiology; Intracellular; Immunology; Immune system; Innate immune system; Cell biology; Bacteria","score_opus":0.010657364981400658,"score_gpt":0.23878694210697476,"score_spread":0.2281295771255741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129040062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960303,0.00020465991,0.0022432327,0.00025106446,0.00027356463,0.00039969134,0.000003310476,0.00004191684,0.0005523013],"genre_scores_gemma":[0.9993639,0.00019636693,0.000014332698,0.00017775508,0.000011215267,0.000020075182,0.000022044453,0.00000880419,0.0001855018],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986384,0.00057103013,0.00042881176,0.00013896973,0.000042112275,0.00018070782],"domain_scores_gemma":[0.99935377,0.0000796511,0.00022482444,0.00025742478,0.0000725247,0.0000118089265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059616537,0.00015668049,0.00025833087,0.00017190215,0.00022028477,0.000025451847,0.000061562576,0.00014979919,0.00008005554],"category_scores_gemma":[0.00003152279,0.00011130973,0.000060253285,0.0002113268,0.000120990466,0.00020332466,0.000022032267,0.00024940152,0.00003930042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006800951,0.00017328633,0.04961917,0.000028540939,0.00005546188,0.0000011295086,0.00065378426,0.00021314449,0.9455161,0.0006931585,0.000019216104,0.0023468817],"study_design_scores_gemma":[0.002813908,0.00046697285,0.6844143,0.000049003447,0.000048817237,0.00008642238,0.0001182513,0.000036090423,0.30909672,0.00026219635,0.0024367278,0.00017056064],"about_ca_topic_score_codex":0.0010834994,"about_ca_topic_score_gemma":0.00018224493,"teacher_disagreement_score":0.6364194,"about_ca_system_score_codex":0.00004213932,"about_ca_system_score_gemma":0.000018904671,"threshold_uncertainty_score":0.4539079},"labels":[],"label_agreement":null},{"id":"W2129043408","doi":"10.1128/iai.01137-07","title":"Genetic Resistance of Mice to<i>Mycobacterium paratuberculosis</i>Is Influenced by<i>Slc11a1</i>at the Early but Not at the Late Stage of Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds Wetenschappelijk Onderzoek; McGill University; Fonds pour la Formation à la Recherche dans l’Industrie et dans l’Agriculture; Vlaamse regering; U.S. Department of Agriculture","keywords":"Biology; Congenic; Microbiology; Paratuberculosis; Spleen; Mycobacterium bovis; Mycobacterium; Immunology; Virology; Bacteria; Gene; Mycobacterium tuberculosis; Genetics; Pathology; Tuberculosis","score_opus":0.018065130629194178,"score_gpt":0.27085789586988723,"score_spread":0.25279276524069305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129043408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99710715,0.00037543473,0.000017368913,0.0008378096,0.0001240259,0.0006270989,0.00015354209,0.000027038512,0.00073054066],"genre_scores_gemma":[0.9884151,0.003925409,0.000013791843,0.00085360155,0.000034302328,0.000076056625,0.000018340004,0.000015797343,0.006647604],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99850696,0.00030522665,0.0003957824,0.00018739435,0.00034204806,0.00026257377],"domain_scores_gemma":[0.99851084,0.0002848494,0.00019551523,0.00056096585,0.0003013724,0.00014643102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037806306,0.00017493565,0.00029276064,0.00009382619,0.0004888005,0.000022186256,0.00008694653,0.00010941072,0.0003542985],"category_scores_gemma":[0.0002988323,0.00011360432,0.00012281015,0.00042037843,0.00037339758,0.00012745873,0.00018046876,0.00031634545,0.000045517412],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071586005,0.000108837325,0.43409714,0.00013544929,0.00006576874,0.00000158189,0.00071201316,0.000010021512,0.56023073,0.0000027995627,0.00373712,0.00018264142],"study_design_scores_gemma":[0.0005089455,0.0003075732,0.63482493,0.00005027527,0.00003630358,0.000017143133,0.000012950422,0.0000044086432,0.34969324,0.000003069628,0.01446845,0.00007267612],"about_ca_topic_score_codex":0.011901732,"about_ca_topic_score_gemma":0.0011851701,"teacher_disagreement_score":0.21053751,"about_ca_system_score_codex":0.00010787934,"about_ca_system_score_gemma":0.00006893643,"threshold_uncertainty_score":0.9946781},"labels":[],"label_agreement":null},{"id":"W2129211055","doi":"10.1128/iai.02586-14","title":"THEMIS Is Required for Pathogenesis of Cerebral Malaria and Protection against Pulmonary Tuberculosis","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Canada Research Chairs; McGill University","keywords":"Plasmodium berghei; Proinflammatory cytokine; Biology; Pathogenesis; Immunology; Spleen; Cerebral Malaria; Immune system; Malaria; Inflammation; Plasmodium falciparum","score_opus":0.02115743041636465,"score_gpt":0.2642072504178284,"score_spread":0.24304982000146375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129211055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99305534,0.00010918887,0.002361948,0.0015737015,0.0000475528,0.00067529135,0.000013003535,0.000030669715,0.002133303],"genre_scores_gemma":[0.99911696,0.00020430838,0.0000998665,0.00017107729,0.0000658133,0.00010319389,0.00001349139,0.000009646463,0.00021562162],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99938506,0.00010702689,0.00015349689,0.00012969418,0.00009371913,0.00013102118],"domain_scores_gemma":[0.9994927,0.000054902364,0.00005574778,0.00017207052,0.00013988798,0.00008471547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004292392,0.000085567735,0.00018245682,0.00008751374,0.00015433578,0.000016552402,0.000020554638,0.00009584449,0.000047040226],"category_scores_gemma":[0.00028884443,0.00007183187,0.00006421866,0.00009490773,0.00006316167,0.00008607865,0.000030120807,0.00012218919,0.0000013057102],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010239179,0.00023105594,0.030552281,0.000523078,0.00012589691,5.6020554e-7,0.00016376874,7.250793e-7,0.71858823,0.00050791213,0.000085134365,0.24819742],"study_design_scores_gemma":[0.0028582395,0.001066198,0.9293807,0.00009590923,0.00011501801,0.000057153615,0.00007942813,0.010996879,0.050742436,0.0007684086,0.0036983164,0.00014130693],"about_ca_topic_score_codex":0.0005921039,"about_ca_topic_score_gemma":0.000018023668,"teacher_disagreement_score":0.89882845,"about_ca_system_score_codex":0.000017973765,"about_ca_system_score_gemma":0.000023139753,"threshold_uncertainty_score":0.29292187},"labels":[],"label_agreement":null},{"id":"W2129550967","doi":"10.1128/iai.74.2.1050-1061.2006","title":"Role for Inducible Costimulator in Control of<i>Salmonella enterica</i>Serovar Typhimurium Infection in Mice","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto; University of Minnesota","keywords":"Salmonella enterica; Biology; CD8; Salmonella; Immune system; T cell; Cytotoxic T cell; Ovalbumin; Microbiology; Antibody; Antigen; Effector; Immunology; In vitro; Bacteria","score_opus":0.00750743270917717,"score_gpt":0.23270507499813892,"score_spread":0.22519764228896175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129550967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968884,0.000812547,0.0008709407,0.000043442065,0.00029408265,0.00044125135,0.000006088441,0.000030800384,0.0006124626],"genre_scores_gemma":[0.99943125,0.00020220852,0.000013470567,0.000035625646,0.0000186695,0.000055057193,0.00007261538,0.0000098248165,0.00016128886],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99892205,0.00030507668,0.00041183524,0.00014582669,0.000020491041,0.00019474556],"domain_scores_gemma":[0.999437,0.00018826529,0.0001516773,0.0001349449,0.00008028645,0.00000788073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051931647,0.00012466223,0.00025458046,0.00033271816,0.00009592669,0.000011099371,0.00004294138,0.00022919038,0.00003899242],"category_scores_gemma":[0.000112406036,0.00012811,0.0000609089,0.00024304539,0.00007384472,0.00019189424,0.000024212932,0.0002454351,0.00002120683],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007227208,0.0002647666,0.19677173,0.000033838387,0.000023619627,2.2226699e-7,0.0001474896,0.00025151265,0.79925305,0.00022382554,0.000067137575,0.002240096],"study_design_scores_gemma":[0.0036792804,0.0002550102,0.7283548,0.000043417465,0.000015998114,0.000012053186,0.000030500576,0.0002711265,0.26022023,0.0003061837,0.006689739,0.00012161192],"about_ca_topic_score_codex":0.012098102,"about_ca_topic_score_gemma":0.0008407837,"teacher_disagreement_score":0.5390328,"about_ca_system_score_codex":0.000060669772,"about_ca_system_score_gemma":0.00003401707,"threshold_uncertainty_score":0.99448043},"labels":[],"label_agreement":null},{"id":"W2129627219","doi":"10.1128/iai.68.12.6840-6847.2000","title":"DNA Sequence and Comparison of Virulence Plasmids from <i>Rhodococcus equi</i> ATCC 33701 and 103","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Washington State University; Grayson-Jockey Club Research Foundation","keywords":"Biology; ORFS; Plasmid; Virulence; Genetics; Rhodococcus equi; Gene; Pathogenicity island; Homology (biology); Open reading frame; Gene cluster; Peptide sequence","score_opus":0.03488796415828281,"score_gpt":0.32636210664179877,"score_spread":0.29147414248351594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129627219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994377,0.000777559,0.000015738005,0.00003465072,0.00006697136,0.00019545454,0.000031138996,0.00004633353,0.0044551496],"genre_scores_gemma":[0.99814117,0.001524803,0.000035368404,0.00012252144,0.000024254543,0.000009105081,0.00003459086,0.000008521166,0.000099654004],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99930954,0.000060381968,0.00023109379,0.00017686498,0.00010151975,0.00012061784],"domain_scores_gemma":[0.9994833,0.00006641249,0.0000860181,0.00017752724,0.000057363806,0.00012937399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094674964,0.00013360528,0.0002768758,0.000052168263,0.00018090085,0.000025168123,0.000012740106,0.00007678433,0.00031239542],"category_scores_gemma":[0.00003387275,0.00011416241,0.000036450096,0.00008687404,0.00020502952,0.00012864494,0.000027433472,0.00014931266,0.0000066871007],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017810726,0.0003942856,0.9216319,0.000080629936,0.000116735406,0.000027221171,0.00037032127,0.000002637577,0.010156482,0.00003139789,0.000055120352,0.0669552],"study_design_scores_gemma":[0.0019771247,0.0005661251,0.97708297,0.0001748668,0.00025790944,0.0003088694,0.000073136034,0.00036556827,0.01487875,0.00029147216,0.0038646548,0.00015854811],"about_ca_topic_score_codex":0.0058230264,"about_ca_topic_score_gemma":0.000068805646,"teacher_disagreement_score":0.06679665,"about_ca_system_score_codex":0.000030949657,"about_ca_system_score_gemma":0.000035274916,"threshold_uncertainty_score":0.8802713},"labels":[],"label_agreement":null},{"id":"W2129882599","doi":"10.1128/iai.69.2.838-844.2001","title":"Critical Role for Signal Transducer and Activator of Transcription Factor 6 in Mediating Intestinal Muscle Hypercontractility and Worm Expulsion in<i>Trichinella spiralis</i>-Infected Mice","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Diseases Research and Treatment","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; McMaster University","keywords":"Trichinella spiralis; Biology; STAT protein; STAT6; Trichinosis; Immunology; Eosinophilia; Cytokine; Interleukin 4; Nippostrongylus brasiliensis; Immune system; Endocrinology; Cell biology; Helminths; Signal transduction; STAT3","score_opus":0.02966000393564435,"score_gpt":0.33593454101115955,"score_spread":0.3062745370755152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129882599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984985,0.0004014075,0.00029617315,0.00015990765,0.000024969462,0.00044137434,0.000018615629,0.000015554167,0.00014352838],"genre_scores_gemma":[0.9993997,0.00039410454,0.00008658526,0.000031277377,0.000018407802,0.000037560018,0.000021409318,0.0000068497366,0.0000040920395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992144,0.000111170906,0.00022681839,0.00016364941,0.00010425983,0.00017967874],"domain_scores_gemma":[0.99929506,0.00037630202,0.00003010224,0.000069009446,0.00008172181,0.00014783311],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020141355,0.00011054574,0.00022716961,0.00016145887,0.000067481946,0.000016669246,0.0000143496145,0.00007032492,0.00004505941],"category_scores_gemma":[0.00055972463,0.00009643987,0.000038369722,0.00016256463,0.000096348485,0.00024677356,0.000009018851,0.0002152101,2.2890694e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091754366,0.00086181733,0.57540166,0.00016755945,0.000015570316,0.0000070707415,0.0005242628,6.625288e-7,0.3618021,0.000011760096,4.760904e-7,0.060289513],"study_design_scores_gemma":[0.0035347715,0.00061700545,0.9819315,0.00012318436,0.000040304134,0.0000379057,0.00017222285,0.0011103341,0.012132056,0.00016887728,0.00005690871,0.00007490903],"about_ca_topic_score_codex":0.0027834903,"about_ca_topic_score_gemma":0.00038922887,"teacher_disagreement_score":0.40652984,"about_ca_system_score_codex":0.000054629596,"about_ca_system_score_gemma":0.000041310985,"threshold_uncertainty_score":0.42078233},"labels":[],"label_agreement":null},{"id":"W2130260138","doi":"10.1128/iai.01023-10","title":"<i>Burkholderia thailandensis oacA</i> Mutants Facilitate the Expression of <i>Burkholderia mallei</i> -Like O Polysaccharides","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"National Institutes of Health","keywords":"Biology; Burkholderia; Microbiology; Mutant; Burkholderia pseudomallei; Monoclonal antibody; Antigen; Acetylation; Lipopolysaccharide; Bacterial capsule; Bacteria; Virulence; Antibody; Biochemistry; Gene; Genetics","score_opus":0.025112633970160708,"score_gpt":0.25681481182036986,"score_spread":0.23170217785020916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130260138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99358803,0.00018450177,0.0002271258,0.00042504867,0.001581408,0.00047321204,0.000024627465,0.0001352561,0.0033607727],"genre_scores_gemma":[0.9976526,0.0007273818,0.00017948868,0.00042347237,0.00014051308,0.00004984376,0.00001717101,0.00002761755,0.000781911],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985826,0.00013942117,0.0004521276,0.00028627913,0.00024592222,0.00029366685],"domain_scores_gemma":[0.9985011,0.00015036139,0.00019776048,0.0007240148,0.00026027867,0.00016644275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061819085,0.00026681554,0.00040632844,0.00018072463,0.0005197077,0.00006284762,0.00010708793,0.0002447526,0.0005388186],"category_scores_gemma":[0.00022164662,0.00018181057,0.00018773972,0.00039314854,0.00035767624,0.00024795323,0.00013401055,0.0008095326,0.000024684163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013943626,0.00025252756,0.03958126,0.00007971809,0.00006145428,0.000002572221,0.0005353779,0.0000019580868,0.95332956,0.000080315665,0.0014880861,0.004447714],"study_design_scores_gemma":[0.002349657,0.00046605698,0.2897473,0.00016692273,0.0002237296,0.0005140589,0.0005049433,0.00007003577,0.64544624,0.000182277,0.059995424,0.00033335196],"about_ca_topic_score_codex":0.0025912812,"about_ca_topic_score_gemma":0.00024868237,"teacher_disagreement_score":0.30788335,"about_ca_system_score_codex":0.00001948024,"about_ca_system_score_gemma":0.000073413095,"threshold_uncertainty_score":0.741402},"labels":[],"label_agreement":null},{"id":"W2130269245","doi":"10.1128/iai.74.5.2619-2627.2006","title":"Maternal Immunity Provides Protection against Pertussis in Newborn Piglets","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Krembil Foundation; Saskatchewan Health Research Foundation; Bill and Melinda Gates Foundation","keywords":"Colostrum; Bordetella pertussis; Immunity; Vaccination; Immunology; Passive immunity; Antibody; Whooping cough; Biology; Immunization; Pertussis toxin; Humoral immunity; Immune system; Immunoglobulin G; Medicine; Internal medicine; Bacteria","score_opus":0.013704041736883879,"score_gpt":0.2289814340669044,"score_spread":0.21527739233002052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130269245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544036,0.0002600475,0.00017755997,0.0001378127,0.00083108695,0.0003205526,0.0000083537225,0.0001485244,0.0026756746],"genre_scores_gemma":[0.9987713,0.00017980053,0.000020832036,0.00003655087,0.00006781002,0.000068920875,0.00005951222,0.00001354309,0.00078170886],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988722,0.00037024947,0.0003161548,0.00018131957,0.000015031021,0.00024500993],"domain_scores_gemma":[0.9995587,0.000036198624,0.00011004753,0.0002063329,0.00007339789,0.000015360469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028718216,0.00017956433,0.00020989064,0.00024532506,0.00048634305,0.00006979346,0.0000616421,0.0002395866,0.00025140998],"category_scores_gemma":[0.000054631008,0.00016022153,0.000062995525,0.00024067562,0.00009934641,0.0003054861,0.00007145836,0.00047708626,0.00008838081],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001321211,0.00032918865,0.19698304,0.000030060088,0.000032332733,6.375925e-7,0.000097671465,0.000015060117,0.75863075,0.00015166377,0.00018650333,0.043410994],"study_design_scores_gemma":[0.0010741582,0.0001514524,0.9006923,0.00004326924,0.000012296663,0.00008476964,0.00004355395,0.000021669295,0.055056565,0.00022730738,0.042414594,0.00017809695],"about_ca_topic_score_codex":0.06535748,"about_ca_topic_score_gemma":0.0057738395,"teacher_disagreement_score":0.70370924,"about_ca_system_score_codex":0.00007418563,"about_ca_system_score_gemma":0.000028695646,"threshold_uncertainty_score":0.9408664},"labels":[],"label_agreement":null},{"id":"W2130547103","doi":"10.1128/iai.72.12.7140-7146.2004","title":"Characterization of a Defensin from the Sand Fly <i>Phlebotomus duboscqi</i> Induced by Challenge with Bacteria or the Protozoan Parasite <i>Leishmania major</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Centre National de la Recherche Scientifique; Grantová Agentura České Republiky; National Institutes of Health; Deutscher Akademischer Austauschdienst","keywords":"Biology; Parasite hosting; Phlebotomus; Leishmania; Protozoa; Kinetoplastida; Leishmania major; Bacteria; Defensin; Psychodidae; Leishmaniasis; Microbiology; Virology; Zoology; Immunology; Malaria; Protozoal disease","score_opus":0.013419388352305241,"score_gpt":0.21882475717266767,"score_spread":0.20540536882036242,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130547103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969988,0.00017155186,0.00033216446,0.00072788436,0.00034241425,0.0011518023,0.00007762882,0.00006971075,0.00012804964],"genre_scores_gemma":[0.99858296,0.00026483642,0.0000142080335,0.00058384385,0.000023137742,0.00013622367,0.00023509897,0.000025772048,0.00013393429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984133,0.0007409489,0.00031715498,0.00022137338,0.000057258963,0.0002499393],"domain_scores_gemma":[0.9989632,0.00014513617,0.00027599148,0.00048181028,0.000114579205,0.000019285388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003869368,0.00024380679,0.000285344,0.000047193498,0.0006329296,0.000056040648,0.00018826571,0.0002378162,0.00016875702],"category_scores_gemma":[0.000056787234,0.0001198697,0.000053594355,0.00022558132,0.00026915938,0.00020439256,0.00009333387,0.0004978994,0.00005544218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011793457,0.00018346847,0.00056064286,0.000011975192,0.00016889875,0.0000010365268,0.0018526245,2.5572606e-7,0.9938231,0.00008923105,0.000040668125,0.0020887419],"study_design_scores_gemma":[0.0027831008,0.00085713196,0.059118073,0.000103713006,0.000084413594,0.00009391167,0.00023676848,0.0000017817313,0.9279132,0.000116734685,0.008483943,0.00020725733],"about_ca_topic_score_codex":0.0045514726,"about_ca_topic_score_gemma":0.0007197614,"teacher_disagreement_score":0.065909944,"about_ca_system_score_codex":0.000041009145,"about_ca_system_score_gemma":0.00010498575,"threshold_uncertainty_score":0.68804955},"labels":[],"label_agreement":null},{"id":"W2130568079","doi":"10.1128/iai.73.9.5493-5503.2005","title":"The <i>Aspergillus fumigatus</i> Siderophore Biosynthetic Gene <i>sidA</i> , Encoding <scp>l</scp> -Ornithine <i>N</i> <sup>5</sup> -Oxygenase, Is Required for Virulence","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":246,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Simon Fraser University; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Wellcome Trust; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Aspergillus fumigatus; Siderophore; Biology; Microbiology; Virulence; Virology; Gene; Biochemistry","score_opus":0.019463490985077544,"score_gpt":0.2656907500786018,"score_spread":0.24622725909352428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130568079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910252,0.0028353787,0.00047712243,0.00093259435,0.00018987017,0.00075296883,0.00007780869,0.00016236419,0.0035466629],"genre_scores_gemma":[0.9895784,0.0052059814,0.0003607949,0.0024862415,0.00030406684,0.00006065804,0.000043167227,0.000040315907,0.0019203387],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979904,0.00016357997,0.0005468217,0.00044373446,0.0003131673,0.0005422566],"domain_scores_gemma":[0.99769735,0.0008234216,0.00017165605,0.00074062584,0.00032955213,0.00023741537],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00096792384,0.0003300481,0.00041336383,0.000088385445,0.0013791131,0.00011935259,0.00014921681,0.00022173727,0.000042877622],"category_scores_gemma":[0.0013207308,0.00024225927,0.00025372588,0.00035765988,0.0004240111,0.00028895648,0.00010246037,0.00052123284,0.0000618275],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001098328,0.0012743177,0.08681853,0.0007410348,0.00051545596,0.00002220485,0.0068430323,0.00020947943,0.7823021,0.00073097623,0.03388424,0.08556032],"study_design_scores_gemma":[0.0038316576,0.0013006097,0.049844336,0.00033724922,0.00034025437,0.00025291,0.0025221638,0.0031107077,0.44127974,0.00072335196,0.49606928,0.00038772795],"about_ca_topic_score_codex":0.0002478474,"about_ca_topic_score_gemma":0.00014363228,"teacher_disagreement_score":0.46218506,"about_ca_system_score_codex":0.0001394817,"about_ca_system_score_gemma":0.00012653724,"threshold_uncertainty_score":0.99992096},"labels":[],"label_agreement":null},{"id":"W2130708720","doi":"10.1128/iai.72.10.6160-6163.2004","title":"Binding of Pro-Matrix Metalloproteinase 9 by<i>Fusobacterium nucleatum</i>subsp.<i>nucleatum</i>as a Mechanism To Promote the Invasion of a Reconstituted Basement Membrane","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Enzyme Production and Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Fusobacterium nucleatum; Biology; Metalloproteinase; Basement membrane; Matrix metalloproteinase; Microbiology; Mechanism (biology); Bacterial outer membrane; Bacteroidaceae; Bacteria; Biochemistry; Porphyromonas gingivalis; Cell biology; Escherichia coli; Genetics; Gene","score_opus":0.009358423708412056,"score_gpt":0.24028084852714426,"score_spread":0.2309224248187322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130708720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99750113,0.00004900189,0.0009275514,0.0004637754,0.0002201782,0.00056970085,0.000024660134,0.000020084786,0.00022393625],"genre_scores_gemma":[0.9988357,0.00030008642,0.00030590472,0.00015589819,0.000031826054,0.000032703196,0.00012123618,0.000014920019,0.00020173453],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991716,0.00010125604,0.00028157604,0.00020985918,0.00011168776,0.00012403524],"domain_scores_gemma":[0.9993042,0.0000041070653,0.00018749163,0.00029476214,0.00015010212,0.00005936107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038463812,0.00013831201,0.00015906662,0.00007614123,0.00016403111,0.000022934186,0.00008877955,0.00009885512,0.000047443147],"category_scores_gemma":[0.00014416367,0.00011262422,0.00006499282,0.00021734455,0.000073343224,0.000021190004,0.00010730604,0.000119485216,0.0000066431717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001029786,0.000182131,0.00007153401,0.00006448772,0.000046132045,2.5204784e-7,0.00026484852,0.000010773493,0.99817926,0.00031707235,0.000061005117,0.00069953746],"study_design_scores_gemma":[0.0006155591,0.0005589145,0.00045794682,0.00006181638,0.00003300814,0.000030783474,0.00009986805,0.0000054119323,0.9873527,0.000095570904,0.010574259,0.000114103685],"about_ca_topic_score_codex":0.00047357747,"about_ca_topic_score_gemma":0.000054861208,"teacher_disagreement_score":0.01082649,"about_ca_system_score_codex":0.000030589763,"about_ca_system_score_gemma":0.00007184884,"threshold_uncertainty_score":0.45926824},"labels":[],"label_agreement":null},{"id":"W2130935881","doi":"10.1128/iai.68.6.3074-3078.2000","title":"Priming with<i>Chlamydia trachomatis</i>Major Outer Membrane Protein (MOMP) DNA followed by MOMP ISCOM Boosting Enhances Protection and Is Associated with Increased Immunoglobulin A and Th1 Cellular Immune Responses","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia; University of Manitoba","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Biology; Chlamydia trachomatis; Immune system; Immunology; DNA vaccination; Antibody; Priming (agriculture); Virology; Vaccination; Immunoglobulin G; Microbiology; Immunization","score_opus":0.012230361539001679,"score_gpt":0.23211280827016118,"score_spread":0.2198824467311595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130935881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948267,0.0022084154,0.00028691132,0.00017254111,0.00006491101,0.0016708948,0.000039464274,0.0002036411,0.0005265408],"genre_scores_gemma":[0.9967349,0.00030274352,0.0000763948,0.000037916903,0.000019454365,0.00029531875,0.00008438586,0.000041291343,0.0024075706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99702823,0.0013608434,0.00044980852,0.0005831769,0.0001205587,0.0004574054],"domain_scores_gemma":[0.9987902,0.00028384032,0.0002581381,0.0004078533,0.00020143775,0.00005851638],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.001204069,0.0003926668,0.0005001163,0.00025157997,0.0014198006,0.00018783724,0.00009785027,0.00032495317,0.00040735208],"category_scores_gemma":[0.00038400604,0.00032001603,0.00005708486,0.00044054628,0.0006584827,0.00066398917,0.00006893166,0.00099627,0.000024365843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019164655,0.0004035651,0.010246364,0.00007448346,0.00046303976,0.0000062914532,0.0010570819,0.0000016684992,0.974622,0.000004465627,0.000026671245,0.011177884],"study_design_scores_gemma":[0.0034468402,0.0010087684,0.20942712,0.00031046977,0.0001142337,0.00039739264,0.00021119915,0.000024731384,0.78335196,0.000023135217,0.0012824609,0.00040168964],"about_ca_topic_score_codex":0.007919252,"about_ca_topic_score_gemma":0.00021181972,"teacher_disagreement_score":0.19918075,"about_ca_system_score_codex":0.00009743853,"about_ca_system_score_gemma":0.00008940344,"threshold_uncertainty_score":0.9999252},"labels":[],"label_agreement":null},{"id":"W2131071261","doi":"10.1128/iai.69.3.1643-1649.2001","title":"Interleukin-12- and Gamma Interferon-Dependent Protection against Malaria Conferred by CpG Oligodeoxynucleotide in Mice","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Plasmodium yoelii; CpG Oligodeoxynucleotide; Biology; CpG site; Immune system; Innate immune system; Immunology; Antigen; Molecular biology; Plasmodium falciparum; DNA methylation; Biochemistry; Malaria","score_opus":0.014937279900681732,"score_gpt":0.225378542102276,"score_spread":0.2104412622015943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131071261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885769,0.00051474385,0.0012587556,0.00028338862,0.0021550409,0.00037326646,0.0000028078632,0.00011594181,0.0067191375],"genre_scores_gemma":[0.991156,0.0014870039,0.0000039995252,0.0002880246,0.000021974367,0.000066913235,0.00008591954,0.000018954239,0.0068712234],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985833,0.00041986772,0.00039727945,0.0002977284,0.00003322209,0.00026859474],"domain_scores_gemma":[0.9995159,0.000052489144,0.00014423447,0.00018395187,0.00007200428,0.000031427022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035898123,0.00022771538,0.00025070235,0.00026751944,0.00027911912,0.00007403149,0.00007024999,0.00028310664,0.0006082572],"category_scores_gemma":[0.000092716735,0.00022839635,0.000052928684,0.00013411384,0.00014689665,0.0004106525,0.00010227882,0.0007143579,0.0001323896],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010574722,0.00032597966,0.015762351,0.000028516899,0.00009382289,0.0000029518685,0.00066391524,0.000005602779,0.9553863,0.000122032514,0.0027061321,0.023844931],"study_design_scores_gemma":[0.0076547367,0.0016840827,0.2349889,0.00027263287,0.000067827066,0.0010264704,0.0017964109,0.00051263423,0.3657311,0.0001514951,0.38524538,0.0008683508],"about_ca_topic_score_codex":0.0040507885,"about_ca_topic_score_gemma":0.0011854824,"teacher_disagreement_score":0.5896552,"about_ca_system_score_codex":0.0001316006,"about_ca_system_score_gemma":0.00001924435,"threshold_uncertainty_score":0.9313733},"labels":[],"label_agreement":null},{"id":"W2131129064","doi":"10.1128/iai.00709-10","title":"Exposure to Cigarette Smoke Inhibits the Pulmonary T-Cell Response to Influenza Virus and<i>Mycobacterium tuberculosis</i>","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Kentucky","keywords":"Mycobacterium tuberculosis; Tuberculosis; Immunology; Virus; Biology; Influenza A virus; Virology; Interferon gamma; Tuberculosis vaccines; Orthomyxoviridae; Immune system; Microbiology; Medicine; Pathology","score_opus":0.009648064135921734,"score_gpt":0.23836229280460708,"score_spread":0.22871422866868535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131129064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958335,0.00042521724,0.000020524662,0.0015524059,0.00093548995,0.00042863702,0.000013999423,0.00009517619,0.0006950565],"genre_scores_gemma":[0.9964136,0.00012863541,0.000008133005,0.0026382604,0.00004775872,0.0000663882,0.000020827923,0.000017766839,0.00065866706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983864,0.00073029887,0.00031388263,0.00023712884,0.000045397894,0.00028688178],"domain_scores_gemma":[0.99897796,0.00028725417,0.000080346144,0.00047641745,0.000119564145,0.000058434995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001186688,0.00021284823,0.00019737857,0.00020647954,0.0007034952,0.00007847078,0.00012431842,0.00030299101,0.00017067645],"category_scores_gemma":[0.0003867529,0.00016580854,0.000058753714,0.00026180738,0.00014478702,0.00023461797,0.0002395925,0.00079136965,0.00022649967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001784671,0.000071620685,0.006725051,0.000011449795,0.000034346176,0.0000011879844,0.0013244244,0.000002409229,0.97948253,0.000035418885,0.0005762973,0.00995058],"study_design_scores_gemma":[0.00039470967,0.0003123904,0.3853642,0.00001641286,0.000021333184,0.0001230152,0.00009398973,9.53013e-7,0.4400489,0.000016181777,0.17345129,0.00015658981],"about_ca_topic_score_codex":0.0009786341,"about_ca_topic_score_gemma":0.00015425803,"teacher_disagreement_score":0.5394336,"about_ca_system_score_codex":0.000023059747,"about_ca_system_score_gemma":0.000043256714,"threshold_uncertainty_score":0.6761476},"labels":[],"label_agreement":null},{"id":"W2131206903","doi":"10.1128/iai.71.7.3988-3994.2003","title":"Immune Responses Induced by the<i>Leishmania</i>(<i>Leishmania</i>)<i>donovani</i>A2 Antigen, but Not by the LACK Antigen, Are Protective against Experimental<i>Leishmania</i>(<i>Leishmania</i>)<i>amazonensis</i>Infection","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":246,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Institut National de Santé Publique du Québec","funders":"Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Leishmania donovani; Antigen; Biology; Immune system; Leishmania; Virology; Immunology; Antibody; Leishmaniasis; Interferon gamma; Visceral leishmaniasis; Parasite hosting","score_opus":0.044603536419416875,"score_gpt":0.30799942384995044,"score_spread":0.26339588743053355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131206903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9728577,0.008292281,0.00031275317,0.0038145932,0.0014962082,0.005729488,0.00023153788,0.00085513777,0.006410263],"genre_scores_gemma":[0.9784216,0.010996655,0.000084497384,0.0058866944,0.0004197796,0.0011651648,0.00015741619,0.00034746985,0.0025207202],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98771054,0.0037494097,0.00223502,0.0020080127,0.002036598,0.0022604438],"domain_scores_gemma":[0.9915273,0.0011847733,0.0021235899,0.0028871014,0.0015734046,0.00070384145],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.004636353,0.0018911696,0.0021429847,0.00063836813,0.005501269,0.0010103444,0.0008556654,0.0008904383,0.0002336403],"category_scores_gemma":[0.0035793735,0.0014290531,0.0009316432,0.0023774072,0.0018741941,0.0014889914,0.00086725364,0.0040912903,0.0003348903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022859753,0.0029526898,0.0533778,0.00028586164,0.0014835381,0.00007410065,0.0020619538,0.000010258456,0.8919509,0.00038335388,0.04120784,0.0039257417],"study_design_scores_gemma":[0.0052619656,0.0017364979,0.23005831,0.0003738831,0.00025262008,0.00072797394,0.002758614,0.000058322996,0.6237006,0.00012518236,0.13348566,0.0014603502],"about_ca_topic_score_codex":0.0115692755,"about_ca_topic_score_gemma":0.0009783504,"teacher_disagreement_score":0.26825026,"about_ca_system_score_codex":0.0009957365,"about_ca_system_score_gemma":0.00049656274,"threshold_uncertainty_score":0.9993832},"labels":[],"label_agreement":null},{"id":"W2131337662","doi":"10.1128/iai.72.5.2742-2752.2004","title":"Engulfment of<i>Neisseria gonorrhoeae</i>: Revealing Distinct Processes of Bacterial Entry by Individual Carcinoembryonic Antigen-Related Cellular Adhesion Molecule Family Receptors","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Neisseria gonorrhoeae; Biology; Carcinoembryonic antigen; Receptor; Microbiology; Antigen; Neisseria; Cell adhesion molecule; Cell biology; Adhesion; Bacteria; Immunology; Biochemistry; Genetics; Chemistry; Cancer","score_opus":0.011180182419319534,"score_gpt":0.2247358860461686,"score_spread":0.21355570362684906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131337662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952048,0.0025690815,0.00008640837,0.000014962391,0.0015465666,0.00024283244,0.00007677558,0.00005851273,0.00020007596],"genre_scores_gemma":[0.99781674,0.0014341114,0.000016230766,0.000007820438,0.000027606919,0.000012465809,0.00059108704,0.000016433576,0.0000774967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987812,0.0002375377,0.00053451164,0.00021234725,0.000018106544,0.00021629815],"domain_scores_gemma":[0.9992061,0.000057624773,0.00032591244,0.00021219341,0.00016887503,0.000029296585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002824649,0.00020800205,0.0003571483,0.00014014651,0.00027988007,0.00002139318,0.00009880532,0.00028390824,0.0003277358],"category_scores_gemma":[0.00011179821,0.00019290375,0.00008548974,0.0003364028,0.00014326542,0.00016420164,0.00009606292,0.00027555443,0.000013653028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014574776,0.00037299652,0.019817961,0.00011460847,0.00014768958,7.9491336e-8,0.00048700444,0.0000056522376,0.9776173,0.000046308593,0.00017544934,0.0010691859],"study_design_scores_gemma":[0.0019049658,0.00055623206,0.12513244,0.00013290296,0.00008285994,0.00001975976,0.00017768936,3.0265682e-7,0.8647827,0.000046513916,0.006963938,0.00019972175],"about_ca_topic_score_codex":0.0031146358,"about_ca_topic_score_gemma":0.00006162911,"teacher_disagreement_score":0.11283465,"about_ca_system_score_codex":0.000036718546,"about_ca_system_score_gemma":0.00011360841,"threshold_uncertainty_score":0.7866387},"labels":[],"label_agreement":null},{"id":"W2131756842","doi":"10.1128/iai.68.3.1150-1155.2000","title":"Cytokines in<i>Mycoplasma hyorhinis</i>-Induced Arthritis in Pigs Bred Selectively for High and Low Immune Responses","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Immune system; Biology; Cytokine; Tumor necrosis factor alpha; Arthritis; Immunology; Antibody; Peripheral blood mononuclear cell; Interleukin 6; Synovial fluid; Medicine; Pathology; In vitro","score_opus":0.01480216865855332,"score_gpt":0.2702701083098113,"score_spread":0.25546793965125797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131756842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720174,0.0014732487,0.000012984852,0.00013162372,0.00016869525,0.00049980206,0.00007033161,0.00005619941,0.0003853698],"genre_scores_gemma":[0.995966,0.0030679072,0.000011314124,0.0000662466,0.00001743098,0.000111834655,0.00007073735,0.000015023323,0.00067351235],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985335,0.00048618868,0.0003400566,0.00026973156,0.000023762339,0.00034676844],"domain_scores_gemma":[0.9993331,0.0003300243,0.00005177247,0.00017070776,0.00007982448,0.000034557943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005174937,0.00017747765,0.0003150936,0.00036750335,0.00038110666,0.000053120246,0.00005480528,0.00024269788,0.0006208581],"category_scores_gemma":[0.0002088851,0.00018103642,0.00005440824,0.00035078172,0.00016429242,0.0002163301,0.000047955684,0.00041568387,0.000043416432],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020701408,0.0006091891,0.041170843,0.00005958733,0.00006308622,0.0000050470826,0.00044223067,0.00000668019,0.88631827,0.0002439643,0.00020136873,0.06880957],"study_design_scores_gemma":[0.008079467,0.00082062325,0.88606143,0.00018799194,0.000016676384,0.00038198687,0.0001275662,0.00002600995,0.097005054,0.0007940097,0.006114681,0.00038447915],"about_ca_topic_score_codex":0.011829819,"about_ca_topic_score_gemma":0.003058689,"teacher_disagreement_score":0.8448906,"about_ca_system_score_codex":0.000056433048,"about_ca_system_score_gemma":0.00009755918,"threshold_uncertainty_score":0.9947505},"labels":[],"label_agreement":null},{"id":"W2131826163","doi":"10.1128/iai.71.4.2142-2152.2003","title":"An<i>Escherichia coli</i>MG1655 Lipopolysaccharide Deep-Rough Core Mutant Grows and Survives in Mouse Cecal Mucus but Fails To Colonize the Mouse Large Intestine","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; University of Guelph; Rhode Island Agricultural Experiment Station; University of Oklahoma","keywords":"Biology; Microbiology; Mucus; Mutant; Escherichia coli; Agar; Cecum; Lipopolysaccharide; Agar plate; Kanamycin; Bacteria; Molecular biology; Biochemistry; Antibiotics; Gene","score_opus":0.022236835107114647,"score_gpt":0.24373013240974245,"score_spread":0.2214932973026278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131826163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99887663,0.00008311,0.00004352878,0.0003025857,0.00008985853,0.00032417424,0.00004088078,0.000054347278,0.00018489719],"genre_scores_gemma":[0.9990527,0.00020302029,0.000047564474,0.0005344797,0.000029623054,0.00002000463,0.000020584353,0.0000020312518,0.000090007066],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989448,0.0002651747,0.0002111267,0.00021559942,0.00008735325,0.0002759384],"domain_scores_gemma":[0.99952257,0.00013086936,0.00006206254,0.00009345818,0.000061875646,0.00012918655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005448507,0.00016229291,0.00017817356,0.000020874653,0.0004234624,0.00015100984,0.0001145775,0.000105939274,0.000066345165],"category_scores_gemma":[0.00020567654,0.00006810035,0.000033501114,0.00027784266,0.00009290256,0.00019297854,0.000083684536,0.00031386403,0.0000046754076],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006807589,0.00037700828,0.051225543,0.0000060309026,0.000012251783,0.0000021769079,0.00048432572,0.0000074030304,0.9439331,0.0014800731,0.000019390509,0.0023845849],"study_design_scores_gemma":[0.0013882408,0.0026998576,0.77432364,0.00003722236,0.00003357745,0.000066577144,0.003959277,0.0014540246,0.20300251,0.0009665887,0.011317375,0.0007510837],"about_ca_topic_score_codex":0.004169552,"about_ca_topic_score_gemma":0.010888425,"teacher_disagreement_score":0.7409306,"about_ca_system_score_codex":0.000026301323,"about_ca_system_score_gemma":0.000008910066,"threshold_uncertainty_score":0.6303143},"labels":[],"label_agreement":null},{"id":"W2132357248","doi":"10.1128/iai.73.12.8144-8152.2005","title":"Comparative Toll-Like Receptor 4-Mediated Innate Host Defense to<i>Bordetella</i>Infection","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; U.S. Public Health Service; National Institutes of Health","keywords":"Bordetella bronchiseptica; Biology; TLR4; Bordetella pertussis; Microbiology; Innate immune system; Toll-like receptor; Immunology; Immunity; Lipopolysaccharide; Immune system; Bacteria","score_opus":0.020906994479017726,"score_gpt":0.2730964061402077,"score_spread":0.25218941166118997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132357248","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99348974,0.000277189,0.00017872282,0.0003238885,0.0022922016,0.00034029008,0.00003488319,0.00026589716,0.0027971661],"genre_scores_gemma":[0.99735105,0.0005700638,0.00004494564,0.00035706093,0.00013094186,0.000045409543,0.00015503749,0.000015908296,0.0013295561],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99873585,0.00035780485,0.0003300423,0.00026094035,0.000019572157,0.00029577594],"domain_scores_gemma":[0.9992662,0.00012411263,0.00011674171,0.00024660106,0.00018613307,0.00006020763],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002780083,0.00023998624,0.0003266647,0.0002577904,0.0006583778,0.00006306293,0.00005858361,0.00026541913,0.001537166],"category_scores_gemma":[0.00008716562,0.00022331625,0.00008312881,0.00039158252,0.00010094517,0.00029015917,0.00009269493,0.0004430227,0.0022479682],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003191476,0.00041444946,0.020276612,0.0000141266255,0.00019157215,1.8211539e-7,0.0010174215,0.000027092843,0.95669365,0.00015772299,0.011304877,0.00958314],"study_design_scores_gemma":[0.0011641477,0.0004627613,0.15534414,0.000024006513,0.00003219058,0.00007863399,0.000060971954,0.000012658509,0.09861986,0.000011391221,0.7438917,0.00029752296],"about_ca_topic_score_codex":0.0031353391,"about_ca_topic_score_gemma":0.0017008374,"teacher_disagreement_score":0.8580738,"about_ca_system_score_codex":0.000079882484,"about_ca_system_score_gemma":0.000031573407,"threshold_uncertainty_score":0.9993756},"labels":[],"label_agreement":null},{"id":"W2132603713","doi":"10.1128/iai.02488-14","title":"Roles of Reactive Oxygen Species-Degrading Enzymes of Francisella tularensis SCHU S4","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Francisella tularensis; Biology; Francisella; Microbiology; Mutant; Reactive oxygen species; Virulence; Catalase; Tularemia; Peroxidase; Molecular biology; Gene; Enzyme; Biochemistry","score_opus":0.032005659088384354,"score_gpt":0.2723316583368342,"score_spread":0.24032599924844986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132603713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99327403,0.00097050733,0.00040064057,0.000019074221,0.00012266864,0.00008635166,0.00001999947,0.0000054824604,0.005101241],"genre_scores_gemma":[0.9990032,0.0006269991,0.00007961387,0.000012058587,0.000071849216,0.0000030604165,0.00003578064,0.000008351492,0.00015911314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993638,0.00010901519,0.00017338467,0.00012271044,0.000113135975,0.00011799816],"domain_scores_gemma":[0.9993466,0.000017743672,0.000090572066,0.00020896082,0.00026280014,0.0000733053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000359395,0.00008909197,0.00016811835,0.000061837425,0.0000622556,0.000011472082,0.00006428393,0.000110874425,0.000024676165],"category_scores_gemma":[0.00024506805,0.0000811609,0.000063225016,0.00011064096,0.00014752359,0.000007433493,0.000085531596,0.000099604724,0.0000017432237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019499089,0.000069164686,0.012761134,0.000025528145,0.00005320828,2.495978e-7,0.00020686611,0.000004400627,0.9804587,0.00014074851,0.00025758526,0.005827475],"study_design_scores_gemma":[0.0005399508,0.00037495524,0.06501222,0.000017473185,0.000011964537,0.0000064255246,0.00019162444,0.000021022215,0.9159538,0.000112917245,0.017664617,0.000093014365],"about_ca_topic_score_codex":0.00057377515,"about_ca_topic_score_gemma":0.00009885292,"teacher_disagreement_score":0.06450483,"about_ca_system_score_codex":0.000011395884,"about_ca_system_score_gemma":0.00005759507,"threshold_uncertainty_score":0.33096454},"labels":[],"label_agreement":null},{"id":"W2132640570","doi":"10.1128/iai.69.5.3143-3149.2001","title":"Activation of Extracellular Signal-Related Protein Kinases 1 and 2 of the Mitogen-Activated Protein Kinase Family by Lipopolysaccharide Requires Plasma in Neutrophils from Adults and Newborns","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Grace (Canada); Izaak Walton Killam Health Centre; Dalhousie University","funders":"Medical Research Council","keywords":"MAPK/ERK pathway; Lipopolysaccharide; Kinase; Respiratory burst; N-Formylmethionine leucyl-phenylalanine; Protein kinase A; Mitogen-activated protein kinase; Biology; Extracellular; Signal transduction; Molecular biology; Cell biology; Immunology; Neutrophile; Inflammation","score_opus":0.011003623339709319,"score_gpt":0.21002504175344575,"score_spread":0.19902141841373644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132640570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976314,0.0011798939,0.000058108504,0.000100200545,0.00008405681,0.0008268552,0.00006397326,0.000025779367,0.000029740539],"genre_scores_gemma":[0.9993261,0.00031917362,0.000015909032,0.0000191123,0.000007083869,0.000046324538,0.000055185115,0.000014433055,0.00019667413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857193,0.00052803796,0.0004117782,0.0002570787,0.000047826994,0.00018336471],"domain_scores_gemma":[0.99926484,0.00009862568,0.0003050173,0.00022191613,0.000084084415,0.00002550192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001767921,0.00020731316,0.0003122398,0.00014012244,0.0001889087,0.000014025585,0.00008427291,0.00024833152,0.000077371944],"category_scores_gemma":[0.00009102708,0.00016365881,0.000043789954,0.00023950098,0.00032383727,0.00024658995,0.00010366922,0.00039125516,0.0000018196092],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000749533,0.0002106807,0.0039084293,0.000034376764,0.00007491909,0.0000013994844,0.0005004819,0.0000022232875,0.98654884,0.00020215672,0.00001121359,0.0077557648],"study_design_scores_gemma":[0.0021939932,0.00039950415,0.046644785,0.00034938927,0.000024162217,0.000008964203,0.0003353115,0.000015641503,0.94908446,0.00043871457,0.0003544131,0.00015063587],"about_ca_topic_score_codex":0.013387852,"about_ca_topic_score_gemma":0.00015811934,"teacher_disagreement_score":0.042736355,"about_ca_system_score_codex":0.000023707787,"about_ca_system_score_gemma":0.000029859057,"threshold_uncertainty_score":0.99318206},"labels":[],"label_agreement":null},{"id":"W2132841322","doi":"10.1128/iai.74.3.1954-1957.2006","title":"Modulation of Human Neutrophil Functions In Vitro by <i>Treponema denticola</i> Major Outer Sheath Protein","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Chemotaxis; Treponema denticola; Phagocytosis; Biology; N-Formylmethionine leucyl-phenylalanine; In vitro; Treponema; Microbiology; Cytoskeleton; Cell biology; Granulocyte; Immunology; Biochemistry; Bacteria; Receptor; Cell","score_opus":0.012784328887584451,"score_gpt":0.2708704706911264,"score_spread":0.25808614180354195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132841322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99799895,0.00008880844,0.00021107028,0.000030240872,0.0001713457,0.00023240915,0.000062314226,0.000029863128,0.0011749797],"genre_scores_gemma":[0.99696577,0.000004187986,0.000014649683,0.000011432248,0.000036744714,0.000028741795,0.00020659999,0.000007947374,0.0027239253],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99918526,0.000217944,0.0002546306,0.00013627243,0.00006274558,0.00014311973],"domain_scores_gemma":[0.9996609,0.000020381114,0.00006888696,0.00016356815,0.00006379643,0.000022484053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001934903,0.00008835212,0.00014663751,0.00013792054,0.00022494368,0.000041272975,0.000044580516,0.00013084346,0.00023999879],"category_scores_gemma":[0.000019992178,0.00008965203,0.000048205497,0.00017744173,0.00010335702,0.00018151072,0.000047559526,0.00026864946,0.000032764976],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005924759,0.00020866696,0.16837718,0.000025662328,0.000008485165,0.000002854063,0.0000152447765,0.000005454407,0.8303602,0.000041851952,0.00053473,0.00036043095],"study_design_scores_gemma":[0.00081112864,0.00009544134,0.85317427,0.000017705139,0.0000072709768,0.000030709933,0.000011686218,0.00004740007,0.14397706,0.00017536242,0.0015592837,0.000092671195],"about_ca_topic_score_codex":0.016145937,"about_ca_topic_score_gemma":0.0033404643,"teacher_disagreement_score":0.6863831,"about_ca_system_score_codex":0.00003931879,"about_ca_system_score_gemma":0.000011450439,"threshold_uncertainty_score":0.9904056},"labels":[],"label_agreement":null},{"id":"W2132875315","doi":"10.1128/iai.01109-06","title":"Heptose I Glycan Substitutions on<i>Neisseria gonorrhoeae</i>Lipooligosaccharide Influence C4b-Binding Protein Binding and Serum Resistance","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Complement system; Binding site; Glycan; Neisseria gonorrhoeae; Factor H; Plasma protein binding; Microbiology; Mutant; Alternative complement pathway; Biochemistry; Glycoprotein; Genetics; Gene; Antibody","score_opus":0.014550399250374442,"score_gpt":0.263726528542929,"score_spread":0.24917612929255456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132875315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969449,0.0004798426,0.00007527362,0.000084035724,0.00040113233,0.00050519995,0.00006962297,0.00015824015,0.0012817351],"genre_scores_gemma":[0.9983785,0.00007586948,0.00002263461,0.00005824246,0.000022264776,0.000041934458,0.00005012334,0.0000129025175,0.0013374974],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99872756,0.00021300692,0.00036250698,0.00028720585,0.000027007267,0.00038273374],"domain_scores_gemma":[0.9992168,0.00016042314,0.00016790772,0.0003174807,0.000075523676,0.00006187921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061578886,0.0002134121,0.00021761794,0.00026634234,0.0011412363,0.00006911369,0.0001105552,0.00013901484,0.00018894266],"category_scores_gemma":[0.00023383721,0.00021507929,0.000048941918,0.00030299302,0.00025452836,0.0002786281,0.00011462411,0.00036671423,0.00013397128],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002988635,0.00016117629,0.18481691,0.00010969028,0.00010254814,0.000002272531,0.0003465901,0.0000042866714,0.80769765,0.0046181693,0.00022041962,0.0016213991],"study_design_scores_gemma":[0.0016066964,0.00022858565,0.7960297,0.00048276858,0.00005604021,0.00009007649,0.00060083123,0.0000017169243,0.16784634,0.00023669025,0.032351334,0.00046924918],"about_ca_topic_score_codex":0.0007688808,"about_ca_topic_score_gemma":0.0013111214,"teacher_disagreement_score":0.63985133,"about_ca_system_score_codex":0.00010896272,"about_ca_system_score_gemma":0.000047063662,"threshold_uncertainty_score":0.8777582},"labels":[],"label_agreement":null},{"id":"W2132913823","doi":"10.1128/iai.00735-07","title":"Comparisons of Mutants Lacking the Golgi UDP-Galactose or GDP-Mannose Transporters Establish that Phosphoglycans Are Important for Promastigote but Not Amastigote Virulence in <i>Leishmania major</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; McMaster University","keywords":"Lipophosphoglycan; Biology; Amastigote; Virulence; Glycoconjugate; Mutant; Leishmania; Mannose; Microbiology; Leishmania major; Leishmania mexicana; Macrophage; Leishmania donovani; Phenotype; Cell biology; Biochemistry; Gene; Parasite hosting; Immunology; In vitro; Leishmaniasis; Visceral leishmaniasis","score_opus":0.05440739424256743,"score_gpt":0.3222764564795794,"score_spread":0.267869062237012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132913823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952475,0.0002866819,0.0015690282,0.0006560576,0.00022646003,0.0014635925,0.00010148759,0.00007116556,0.00037804194],"genre_scores_gemma":[0.9981007,0.0010068159,0.0002644669,0.00026518494,0.00005083491,0.00006941649,0.000022320082,0.000034644057,0.00018561762],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99778426,0.000092491624,0.0007410126,0.0003460042,0.00045466365,0.0005815655],"domain_scores_gemma":[0.99821544,0.0004624577,0.00039989848,0.00045496333,0.00029554326,0.00017167102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017721192,0.00029898237,0.0006470809,0.00027058122,0.00040822523,0.000059351074,0.00017586435,0.00013883316,0.00003674002],"category_scores_gemma":[0.0004949143,0.00021034438,0.00014642418,0.0006030638,0.00048102337,0.00033164042,0.00008457698,0.0007172268,0.0000019997249],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00354366,0.00062969566,0.95894617,0.00053477427,0.00018971387,0.000075919656,0.0023307006,0.000010081116,0.028542574,0.000059450012,0.00058319233,0.00455408],"study_design_scores_gemma":[0.0029536942,0.0005906854,0.93285435,0.0005182447,0.00011102018,0.00007817951,0.0026251713,0.0002917822,0.056180544,0.000024549927,0.0035565977,0.00021517545],"about_ca_topic_score_codex":0.007058905,"about_ca_topic_score_gemma":0.019868504,"teacher_disagreement_score":0.027637968,"about_ca_system_score_codex":0.000145761,"about_ca_system_score_gemma":0.00014619586,"threshold_uncertainty_score":0.9995532},"labels":[],"label_agreement":null},{"id":"W2133029927","doi":"10.1128/iai.01765-14","title":"Mechanism of Asp24 Upregulation in Brucella abortus Rough Mutant with a Disrupted O-Antigen Export System and Effect of Asp24 in Bacterial Intracellular Survival","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Dalhousie University","keywords":"Mutant; Biology; Downregulation and upregulation; Molecular biology; Intracellular; Microarray analysis techniques; Brucella; Brucellaceae; Gene expression; Gene; Microbiology; Cell biology; Brucella melitensis; Virology; Genetics","score_opus":0.022899994337792766,"score_gpt":0.2832802041939945,"score_spread":0.26038020985620175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133029927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981644,0.00012431192,0.00037252752,0.000017583332,0.00031600767,0.00066645944,0.000012717083,0.000043419583,0.00028256647],"genre_scores_gemma":[0.99959975,0.00015027988,0.00008238157,0.0000041364133,0.00003257409,0.000059799204,0.000045113487,0.000022424749,0.0000035416704],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99691427,0.0017901612,0.0006607422,0.00028854285,0.00012923188,0.0002170736],"domain_scores_gemma":[0.9985824,0.0005955584,0.000372143,0.0003325758,0.000057893936,0.000059425733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001974582,0.0002486479,0.00072899944,0.0002129736,0.00006167082,0.000014392152,0.00005960627,0.00022971407,0.000027749353],"category_scores_gemma":[0.00018331627,0.00020594707,0.000055146447,0.00022548923,0.00011586982,0.00013291203,0.00007324434,0.0002162982,0.0000021441547],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018759475,0.00035156385,0.86726296,0.0005753335,0.00012174972,0.000027864293,0.0006896117,0.00007958571,0.12448152,0.0012522803,0.000001982603,0.0032795754],"study_design_scores_gemma":[0.0031860792,0.0030932792,0.94427323,0.0003849716,0.00006680873,0.00012075725,0.00010695066,0.0026802726,0.04574877,0.00009796418,0.000044118886,0.00019677663],"about_ca_topic_score_codex":0.010695199,"about_ca_topic_score_gemma":0.00092167663,"teacher_disagreement_score":0.07873275,"about_ca_system_score_codex":0.00011491393,"about_ca_system_score_gemma":0.000024229945,"threshold_uncertainty_score":0.99589264},"labels":[],"label_agreement":null},{"id":"W2133253501","doi":"10.1128/iai.00725-07","title":"Intranasal Immunization with Gal-Inhibitable Lectin plus an Adjuvant of CpG Oligodeoxynucleotides Protects against <i>Entamoeba histolytica</i> Challenge","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"University of Virginia","keywords":"Biology; Adjuvant; Immune system; Entamoeba histolytica; CpG Oligodeoxynucleotide; Immunology; Lectin; Antigen; Virology; Microbiology; C-type lectin; Antibody; Immunization; DNA methylation","score_opus":0.01391777879917864,"score_gpt":0.262549175708894,"score_spread":0.2486313969097154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133253501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9779841,0.00018385868,0.007144708,0.00006852256,0.00014471773,0.0006568096,0.0000031761654,0.00013096424,0.013683184],"genre_scores_gemma":[0.9987996,0.00031929798,0.00040568944,0.00008333137,0.000052828276,0.000027867352,0.000055690252,0.00003152842,0.00022413942],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989217,0.000088167675,0.00033285868,0.00020954336,0.00018097316,0.00026673963],"domain_scores_gemma":[0.9990413,0.000045094574,0.00016407641,0.00034483845,0.00026263134,0.00014206044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042525912,0.00020562006,0.00033790286,0.00025057778,0.00037003937,0.000020241736,0.00003622698,0.00012730768,0.00007904994],"category_scores_gemma":[0.000057173136,0.00016846728,0.000058201684,0.0003914456,0.00018137594,0.00029999818,0.000033094828,0.00035440337,0.0000065251156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010210019,0.01786719,0.4898328,0.002157872,0.002339647,0.0002787955,0.011820944,0.0009957238,0.18277742,0.006600756,0.00048045925,0.27463838],"study_design_scores_gemma":[0.01654347,0.011737465,0.7539559,0.00091808796,0.0005806278,0.0008449126,0.0017604508,0.0021784857,0.20542088,0.00033721712,0.0048280237,0.00089446566],"about_ca_topic_score_codex":0.0030257488,"about_ca_topic_score_gemma":0.0009705372,"teacher_disagreement_score":0.27374393,"about_ca_system_score_codex":0.00023481634,"about_ca_system_score_gemma":0.000113613525,"threshold_uncertainty_score":0.68698967},"labels":[],"label_agreement":null},{"id":"W2133285072","doi":"10.1128/iai.70.11.5913-5923.2002","title":"The Growth Response of <i>Escherichia coli</i> to Neurotransmitters and Related Catecholamine Drugs Requires a Functional Enterobactin Biosynthesis and Uptake System","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Enterobactin; Siderophore; Escherichia coli; Biology; Ferrichrome; Biochemistry; Transferrin; Stimulation; Biosynthesis; Endocrinology; Gene; Bacterial outer membrane","score_opus":0.010439771147757407,"score_gpt":0.21264739240376349,"score_spread":0.20220762125600608,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133285072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983513,0.0004890002,0.00005347834,0.0006639229,0.0001067582,0.00016404243,0.000009780128,0.0000141698465,0.00014757134],"genre_scores_gemma":[0.9983768,0.0011982613,0.000023264307,0.00020009837,0.000013194196,0.000008811859,0.0000043609502,0.000008795632,0.00016643241],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992179,0.00028548588,0.00018582254,0.00015125173,0.000043057964,0.00011646465],"domain_scores_gemma":[0.9996125,0.00006474375,0.000065379194,0.0001403471,0.0000538176,0.00006320695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004620756,0.000096801035,0.000099975645,0.00004412215,0.00029423842,0.000029176614,0.000034477824,0.00008370982,0.000005076796],"category_scores_gemma":[0.000098293276,0.00007759461,0.000027031758,0.00009542585,0.00009402168,0.0000071409913,0.00004359537,0.00010892565,0.0000014837511],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004462021,0.000032162177,0.0026967968,0.000051135044,0.000030262892,3.5259208e-7,0.00025798852,7.029138e-7,0.9946133,0.000030353654,0.00024994786,0.001590828],"study_design_scores_gemma":[0.0011000495,0.0008436043,0.834986,0.0000810132,0.00004530256,0.00014695358,0.00044795944,0.000083986655,0.14114352,0.000007669732,0.020909349,0.00020461115],"about_ca_topic_score_codex":0.0002779548,"about_ca_topic_score_gemma":0.000038208735,"teacher_disagreement_score":0.8534697,"about_ca_system_score_codex":0.00001091632,"about_ca_system_score_gemma":0.000011224426,"threshold_uncertainty_score":0.31642163},"labels":[],"label_agreement":null},{"id":"W2133727168","doi":"10.1128/iai.01771-14","title":"Giardia duodenalis Cathepsin B Proteases Degrade Intestinal Epithelial Interleukin-8 and Attenuate Interleukin-8-Induced Neutrophil Chemotaxis","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Giardia; Proteases; Chemotaxis; Microbiology; Cathepsin B; Cathepsin; Immunology; Interleukin 8; Intestinal mucosa; Interleukin; Interleukin 2; Cathepsin L1; Intestinal epithelium; Immune system; Epithelium; Inflammation; Cytokine; Enzyme; Biochemistry","score_opus":0.0146360244602171,"score_gpt":0.24507977359541067,"score_spread":0.23044374913519355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133727168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99562645,0.00016905507,0.0014733064,0.0002093006,0.0008568244,0.00027168583,0.000022070186,0.00014248486,0.0012287995],"genre_scores_gemma":[0.9991116,0.00013686788,0.000077674886,0.0002400821,0.0000972497,0.00005062448,0.00004906479,0.00002059258,0.00021622363],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99855334,0.00045529314,0.00032626558,0.00030160535,0.00003663806,0.0003268502],"domain_scores_gemma":[0.9989686,0.0003854078,0.00014571102,0.0002985545,0.00013763801,0.00006407356],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004165443,0.00027488748,0.00033375312,0.0001932954,0.0006149825,0.00007761946,0.00009322314,0.00023201726,0.00014542289],"category_scores_gemma":[0.0008623505,0.0002466285,0.00009243232,0.0001515082,0.00035367234,0.00017082276,0.00014615759,0.0006301924,0.00015932719],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045652754,0.00078356155,0.16446231,0.00012624453,0.00036323143,0.000010116725,0.0019145602,0.000007694354,0.74247086,0.0027445205,0.000994183,0.08566617],"study_design_scores_gemma":[0.0034326392,0.0020617442,0.71388555,0.00027127884,0.00022306514,0.0021011874,0.00016283731,0.00016605148,0.24437095,0.0012100573,0.031353764,0.00076087925],"about_ca_topic_score_codex":0.004936705,"about_ca_topic_score_gemma":0.00023408092,"teacher_disagreement_score":0.5494232,"about_ca_system_score_codex":0.000057572066,"about_ca_system_score_gemma":0.000039376504,"threshold_uncertainty_score":0.99999857},"labels":[],"label_agreement":null},{"id":"W2133817701","doi":"10.1128/iai.00081-12","title":"Mutations That Impact the Enteropathogenic Escherichia coli Cpx Envelope Stress Response Attenuate Virulence in Galleria mellonella","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Galleria mellonella; Virulence; Biology; Microbiology; Enteropathogenic Escherichia coli; Escherichia coli; Secretion; Pilus; Mutant; Pathogen; Genetics; Gene","score_opus":0.025573072978002022,"score_gpt":0.3123365166476796,"score_spread":0.28676344366967754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133817701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978773,0.00114433,0.000115816016,0.00012360714,0.0001281488,0.0002267728,0.00001914305,0.000011857591,0.00035304288],"genre_scores_gemma":[0.99778926,0.0017405818,0.000035678953,0.000094642666,0.000053275417,0.00006342325,0.00002248648,0.000012585922,0.00018807876],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99846375,0.00085166265,0.00014102913,0.00014379057,0.00010331664,0.00029646562],"domain_scores_gemma":[0.99942034,0.00009027667,0.00006433349,0.0002788945,0.000065829096,0.0000803229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009830073,0.00014247744,0.000115114046,0.000052320964,0.0002982102,0.000045805802,0.00011218662,0.000081028134,0.000039621955],"category_scores_gemma":[0.0003930947,0.00010487955,0.00006253541,0.00017985364,0.00018542593,0.000020351237,0.00022054905,0.00024335354,0.000011945053],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036461707,0.00012686016,0.38350996,0.000009520941,0.000057810757,7.008506e-7,0.0006198092,0.000030334588,0.6145989,0.0000057055677,0.00010804562,0.00056777784],"study_design_scores_gemma":[0.00037128179,0.00017204466,0.9494277,0.000013933744,0.000009781308,0.0000087204235,0.00033348118,0.00004879897,0.046519335,0.000010149503,0.0029604477,0.00012430709],"about_ca_topic_score_codex":0.00071872416,"about_ca_topic_score_gemma":0.0003996963,"teacher_disagreement_score":0.56807953,"about_ca_system_score_codex":0.000040529023,"about_ca_system_score_gemma":0.00006468301,"threshold_uncertainty_score":0.4276864},"labels":[],"label_agreement":null},{"id":"W2133818571","doi":"10.1128/iai.68.3.1243-1251.2000","title":"Tumor Necrosis Factor Receptor p55-Deficient Mice Respond to Acute<i>Yersinia enterocolitica</i>Infection with Less Apoptosis and More Effective Host Resistance","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Western Hospital","funders":"Medical Research Council; Medical Research Council Canada; University of Toronto; Arthritis Society","keywords":"Yersinia enterocolitica; Biology; Apoptosis; Tumor necrosis factor alpha; Host resistance; Host (biology); Microbiology; Necrosis; Immunology; Yersinia; Receptor; Cancer research; Bacteria; Genetics","score_opus":0.013416730750903988,"score_gpt":0.293635075953172,"score_spread":0.280218345202268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133818571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639344,0.0000791302,0.00022680673,0.0014838391,0.00009485718,0.0010166581,0.00008114346,0.00008272513,0.00054141565],"genre_scores_gemma":[0.9964478,0.0007065504,0.00026070283,0.0011901417,0.00005450077,0.00018418774,0.000032012013,0.000023051207,0.0011010441],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982772,0.00045065733,0.00025605335,0.0003821238,0.00018006457,0.00045393236],"domain_scores_gemma":[0.9990615,0.000087122455,0.00006134648,0.00024940126,0.00016113867,0.00037948837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034176474,0.00023098399,0.0004130344,0.00020461666,0.00037988258,0.00006604914,0.000043832526,0.00009152822,0.0001813536],"category_scores_gemma":[0.00021598749,0.0001918345,0.00006809016,0.00031242336,0.0002540428,0.0001902524,0.000056607565,0.00043355522,0.000037527207],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.032954637,0.0012364439,0.48861855,0.00066729233,0.0006215823,0.000031384898,0.0025572937,0.000010300295,0.42406407,0.000056740682,0.0061412263,0.04304048],"study_design_scores_gemma":[0.0021870728,0.0036787766,0.9595069,0.00036134795,0.00007230271,0.00015909945,0.00015985632,0.000019319516,0.013587355,0.000006665917,0.02007147,0.00018981246],"about_ca_topic_score_codex":0.003941277,"about_ca_topic_score_gemma":0.0005196191,"teacher_disagreement_score":0.47088838,"about_ca_system_score_codex":0.0001864168,"about_ca_system_score_gemma":0.000029741024,"threshold_uncertainty_score":0.78227836},"labels":[],"label_agreement":null},{"id":"W2134114800","doi":"10.1128/iai.00757-09","title":"Important Science—It's All about the SPIN","year":2009,"lang":"en","type":"editorial","venue":"Infection and Immunity","topic":"Meta-analysis and systematic reviews","field":"Decision Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Futures studies; Biology; Data science; Computational biology; Computer science; Artificial intelligence","score_opus":0.490970641260244,"score_gpt":0.5333910680349321,"score_spread":0.0424204267746881,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134114800","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.015316023,0.0026041914,0.0005893891,0.0011693093,0.9359335,0.0010575909,0.00004252831,0.000022794,0.04326468],"genre_scores_gemma":[0.103164665,0.01054344,0.00038600058,0.002747403,0.8232857,0.00013986448,0.00018295442,0.0000679064,0.059482045],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.97819316,0.0063934987,0.0066754385,0.00090408424,0.007490906,0.0003429154],"domain_scores_gemma":[0.9816274,0.004599152,0.0060727564,0.0048775836,0.0026303602,0.0001927539],"candidate_categories":["metaresearch","scholarly_communication","insufficient_payload"],"consensus_categories":["metaresearch","insufficient_payload"],"category_scores_codex":[0.19989966,0.00041241437,0.0024120957,0.0005780105,0.0010853251,0.0037458846,0.0021229654,0.00036753563,0.0031664877],"category_scores_gemma":[0.101925746,0.000165785,0.0011949538,0.0018950724,0.00048001483,0.00041374713,0.00029662944,0.0011624388,0.0009238662],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000027861674,0.000031439646,0.0005019344,0.000012679422,0.00006170704,8.293769e-7,0.0002128098,0.0000017542707,0.00002522318,0.0001782088,0.984199,0.014771615],"study_design_scores_gemma":[0.00010126357,0.00007414124,0.010869449,0.000041387884,0.00018484714,0.0000075006487,0.00010427288,0.00023151936,0.000008568534,0.002036413,0.986153,0.00018765031],"about_ca_topic_score_codex":0.0008403442,"about_ca_topic_score_gemma":0.00037251634,"teacher_disagreement_score":0.11264778,"about_ca_system_score_codex":0.0000857145,"about_ca_system_score_gemma":0.0004685631,"threshold_uncertainty_score":0.999854},"labels":[],"label_agreement":null},{"id":"W2134131767","doi":"10.1128/iai.00152-10","title":"EseG, an Effector of the Type III Secretion System of <i>Edwardsiella tarda</i> , Triggers Microtubule Destabilization","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity Western University; Western University; University of British Columbia","funders":"Biomedical Research Council; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; University of British Columbia; Agency for Science, Technology and Research; Howard Hughes Medical Institute","keywords":"Edwardsiella tarda; Biology; Effector; Type three secretion system; Secretion; Chaperone (clinical); Microbiology; Virulence; Microtubule; Cell biology; Genetics; Gene; Biochemistry","score_opus":0.007239410786145627,"score_gpt":0.2534005738352104,"score_spread":0.2461611630490648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134131767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989563,0.00006587397,0.00013616378,0.000010038955,0.00029051423,0.00021539652,0.000010254671,0.0000078470985,0.00030761043],"genre_scores_gemma":[0.99972147,0.00012730739,0.000030089761,0.000007032614,0.000038518676,0.000006780094,0.000038028433,0.0000063258763,0.000024462463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99942994,0.00019536144,0.00013236943,0.00009395196,0.000070171365,0.000078233265],"domain_scores_gemma":[0.99940014,0.000015245936,0.000090861395,0.00025696904,0.00020917301,0.000027626382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031679726,0.00006762462,0.00010187862,0.000027146209,0.00010993789,0.000009091867,0.000066577115,0.000088285415,0.000010375864],"category_scores_gemma":[0.00019354382,0.000050124843,0.00004154354,0.00011027787,0.0001516049,0.0000067276205,0.00008131898,0.000105420906,6.3656665e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095370095,0.00003979248,0.02456266,0.00009496167,0.000020193334,2.4939965e-8,0.00006735328,0.000004959329,0.9746015,0.000017998382,0.000040834242,0.0004543382],"study_design_scores_gemma":[0.0003985516,0.00037769516,0.11645643,0.000020396928,0.000013745169,0.0000060467933,0.00008044619,0.000058757476,0.88133925,0.0000037660482,0.0011904498,0.000054456006],"about_ca_topic_score_codex":0.0005575884,"about_ca_topic_score_gemma":0.00026397203,"teacher_disagreement_score":0.093262255,"about_ca_system_score_codex":0.000009016335,"about_ca_system_score_gemma":0.0000437027,"threshold_uncertainty_score":0.20440318},"labels":[],"label_agreement":null},{"id":"W2134245901","doi":"10.1128/iai.01232-08","title":"<i>Cryptococcus neoformans</i>Directly Stimulates Perforin Production and Rearms NK Cells for Enhanced Anticryptococcal Microbicidal Activity","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fondation pour la Recherche Médicale; Canadian Institutes of Health Research; Canadian Foundation for AIDS Research","keywords":"Cryptococcus neoformans; Biology; Microbiology; Perforin; Virology; Cryptococcus; Immunology; Cryptococcosis; Immune system; CD8","score_opus":0.016170346891891455,"score_gpt":0.28385727807031347,"score_spread":0.267686931178422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134245901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955203,0.0001313268,0.00132498,0.0003328125,0.00043137948,0.0010843263,0.0000060063585,0.00012829136,0.0010405753],"genre_scores_gemma":[0.9982547,0.00069970364,0.00032236826,0.00010834233,0.0001521409,0.000052691834,0.000008739963,0.00001142177,0.00038989467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992144,0.00004824005,0.00018977837,0.00024368295,0.00006777904,0.00023608217],"domain_scores_gemma":[0.999434,0.00006122429,0.00007262964,0.0001744574,0.0001759549,0.00008175426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027104144,0.00018804577,0.00029290054,0.00012429163,0.00061625516,0.0000491376,0.000018716008,0.00010884133,0.00002062723],"category_scores_gemma":[0.00012937406,0.00016054427,0.00007742394,0.00017400658,0.00011151197,0.00024371243,0.000027072838,0.000290421,0.000005029557],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036555753,0.00034376755,0.007437466,0.00013267764,0.000054145672,4.2150987e-7,0.00036076867,0.00002083945,0.962047,0.000033475393,0.00033303953,0.02887085],"study_design_scores_gemma":[0.0011514112,0.0016554585,0.31782046,0.00009662433,0.00009367762,0.000044803164,0.00006340757,0.0003282435,0.6752458,0.00010604095,0.0032040353,0.00019001408],"about_ca_topic_score_codex":0.00027528228,"about_ca_topic_score_gemma":0.000045302077,"teacher_disagreement_score":0.310383,"about_ca_system_score_codex":0.00005308191,"about_ca_system_score_gemma":0.000026505275,"threshold_uncertainty_score":0.6546805},"labels":[],"label_agreement":null},{"id":"W2134476463","doi":"10.1128/iai.68.6.3689-3695.2000","title":"Role of EspB in Experimental Human Enteropathogenic <i>Escherichia coli</i> Infection","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Medical Research Council Canada","keywords":"Microbiology; Virulence; Biology; Enteropathogenic Escherichia coli; Escherichia coli; Immune system; Diarrhea; Mutant; Secretion; Wild type; Virology; Immunology; Medicine; Gene; Biochemistry","score_opus":0.009700069793375442,"score_gpt":0.27971028053940883,"score_spread":0.2700102107460334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134476463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941057,0.0007255695,0.0000067448887,0.0000061687606,0.000030014173,0.00013967032,0.0000024230196,0.000011068667,0.0049726404],"genre_scores_gemma":[0.9986246,0.0010208357,0.000020039899,0.000042879386,0.000033902652,0.00003594532,0.000017047669,0.00000880006,0.00019594813],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993336,0.00016657093,0.00015918883,0.00013926093,0.000066863366,0.00013447236],"domain_scores_gemma":[0.99973404,0.000005668135,0.000037748705,0.00015310833,0.00003441853,0.000034984598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017846939,0.00009610434,0.00011251225,0.000048121063,0.00011985641,0.000012914369,0.000042396514,0.00007600861,0.000095223455],"category_scores_gemma":[0.000024328228,0.00009997372,0.000047608926,0.00012011989,0.0001004627,0.00000921543,0.00007276624,0.00013297805,0.0000037775123],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061361745,0.00021725077,0.12436493,0.000009410544,0.000018098131,1.8820775e-7,0.00012281012,0.0000091043075,0.8730336,0.000013334827,0.000019869574,0.0021300633],"study_design_scores_gemma":[0.00055755064,0.00050244044,0.5157775,0.000010726717,0.0000040659243,0.0000035640096,0.00006227583,0.000030827116,0.47449017,0.000022324339,0.008445405,0.000093132076],"about_ca_topic_score_codex":0.0023148758,"about_ca_topic_score_gemma":0.0007310399,"teacher_disagreement_score":0.39854342,"about_ca_system_score_codex":0.000020165933,"about_ca_system_score_gemma":0.000018030407,"threshold_uncertainty_score":0.407681},"labels":[],"label_agreement":null},{"id":"W2134559590","doi":"10.1128/iai.01305-12","title":"Chlamydia trachomatis Plasmid-Encoded Pgp4 Is a Transcriptional Regulator of Virulence-Associated Genes","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":170,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; University of California, Irvine; National Institutes of Health; Wellcome Trust","keywords":"Biology; Plasmid; ORFS; Chlamydia trachomatis; Chlamydiae; Gene; Virulence; Genetics; Mutant; Open reading frame; Microbiology; Virology; Peptide sequence","score_opus":0.02052667137527011,"score_gpt":0.2589823493053136,"score_spread":0.2384556779300435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134559590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962188,0.0008296724,0.00016716354,0.00019644201,0.0004283637,0.00039243675,0.00004516603,0.00008883575,0.0016331144],"genre_scores_gemma":[0.9975759,0.0005576459,0.00003372019,0.000047890004,0.000018417993,0.00008472695,0.000052465017,0.000013026611,0.0016162092],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986484,0.0004327982,0.0003529267,0.0002449582,0.00007002641,0.00025090057],"domain_scores_gemma":[0.99899864,0.00015925198,0.00013992541,0.00029704339,0.00037321213,0.00003192058],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040724012,0.00016100709,0.00026430064,0.00024439133,0.00038135902,0.000031663287,0.000098190554,0.0002742751,0.004474014],"category_scores_gemma":[0.00023730284,0.00014941017,0.00011144948,0.00032661937,0.00043453983,0.00042297374,0.00003824402,0.00046755138,0.00036705242],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041882016,0.0005066685,0.09266795,0.000029513329,0.00024911136,1.555204e-7,0.00063913304,0.000006148141,0.89003766,0.0003006141,0.0012855644,0.014235597],"study_design_scores_gemma":[0.0007520829,0.00014230535,0.7775668,0.000023271206,0.000023057713,0.000043554104,0.0000896698,0.00002878952,0.2177633,0.0005197777,0.002921593,0.00012582062],"about_ca_topic_score_codex":0.006066807,"about_ca_topic_score_gemma":0.00010172554,"teacher_disagreement_score":0.6848988,"about_ca_system_score_codex":0.00006552343,"about_ca_system_score_gemma":0.00006480678,"threshold_uncertainty_score":0.99643606},"labels":[],"label_agreement":null},{"id":"W2134782096","doi":"10.1128/iai.00699-10","title":"<i>Entamoeba histolytica</i> Infection and Secreted Proteins Proteolytically Damage Enteric Neurons","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Queen's University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Biology; Entamoeba histolytica; Enteric nervous system; Microbiology; Protease; Axon; Secretion; Mucus; Cysteine protease; Population; Cell biology; Biochemistry; Enzyme; Endocrinology","score_opus":0.010297718219493435,"score_gpt":0.2565030876427873,"score_spread":0.24620536942329385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134782096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98787916,0.000016317275,0.0008133254,0.00028898744,0.00041829477,0.0009797043,0.000005558819,0.00020305881,0.009395618],"genre_scores_gemma":[0.9983184,0.00011607636,0.00029218945,0.00024055508,0.00008691488,0.00011539384,0.000030882155,0.000023789835,0.0007758392],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990847,0.00008699355,0.00023238026,0.00025121408,0.00012361031,0.00022111242],"domain_scores_gemma":[0.9992384,0.000039189683,0.00008516411,0.00031854887,0.00012099286,0.00019773364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018405002,0.00020520686,0.00023149635,0.00018208355,0.00048298846,0.0000626371,0.000023175253,0.00015963304,0.00029357424],"category_scores_gemma":[0.00019574293,0.00017791177,0.00007061004,0.00024354515,0.00024557568,0.00022806827,0.00007693837,0.0007215514,0.00003590875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001952996,0.0010787429,0.8714151,0.00015659288,0.00014448237,0.00002313881,0.00022844106,5.475729e-7,0.10948371,0.00089156814,0.0001747437,0.01620768],"study_design_scores_gemma":[0.002115865,0.0010769077,0.97319293,0.000047284233,0.00017301178,0.0008086535,0.000012544466,0.0005592006,0.0039343038,0.0001747201,0.017717272,0.00018729783],"about_ca_topic_score_codex":0.0025266095,"about_ca_topic_score_gemma":0.000351752,"teacher_disagreement_score":0.10554941,"about_ca_system_score_codex":0.00006062964,"about_ca_system_score_gemma":0.00006279589,"threshold_uncertainty_score":0.7255032},"labels":[],"label_agreement":null},{"id":"W2134840969","doi":"10.1128/iai.69.7.4438-4446.2001","title":"Cloning, Overexpression, Purification, and Immunobiology of an 85-Kilodalton Outer Membrane Protein from<i>Haemophilus ducreyi</i>","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Haemophilus ducreyi; Biology; Microbiology; Bacterial outer membrane; Haemophilus influenzae; Virulence; Neisseria meningitidis; Neisseria; Escherichia coli; Virology; Gene; Peptide sequence; Pasteurellaceae; Bacteria; Genetics","score_opus":0.01588418711343774,"score_gpt":0.2773838199849818,"score_spread":0.26149963287154404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134840969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978607,0.00053350074,0.00006149133,0.0003667298,0.00007318091,0.00028318228,0.000015813468,0.000051505165,0.0007538498],"genre_scores_gemma":[0.9985273,0.00055248133,0.00009389765,0.00033098547,0.00006675303,0.000021585698,0.00013403741,0.000009023692,0.00026395798],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992071,0.00020498197,0.0002280415,0.00018094364,0.000057139543,0.00012178954],"domain_scores_gemma":[0.999395,0.000029627485,0.0001116462,0.00028896163,0.00008474935,0.000090004716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015805499,0.00011830098,0.00022677836,0.00008193625,0.00017659622,0.000010342625,0.000038615668,0.00016570758,0.00023717344],"category_scores_gemma":[0.00011708394,0.00009793247,0.00003722177,0.00008734098,0.00026597452,0.00018458437,0.00004188193,0.00022247796,0.0000072849793],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012365665,0.00052576896,0.11528926,0.00006105843,0.00007266502,0.000006357316,0.00031581082,0.0000010059799,0.8766413,0.00022224685,0.000082243205,0.0055457135],"study_design_scores_gemma":[0.0016958591,0.00080194196,0.90523314,0.00010590505,0.00006863202,0.00010742525,0.00005715913,0.00005731214,0.08681,0.000928517,0.0040192865,0.00011483781],"about_ca_topic_score_codex":0.0019217965,"about_ca_topic_score_gemma":0.000035744437,"teacher_disagreement_score":0.7899439,"about_ca_system_score_codex":0.000010716623,"about_ca_system_score_gemma":0.000026031936,"threshold_uncertainty_score":0.39935702},"labels":[],"label_agreement":null},{"id":"W2134936774","doi":"10.1128/iai.70.11.5972-5981.2002","title":"Primary Dendritic Cells Phagocytose<i>Cryptococcus neoformans</i>via Mannose Receptors and Fcγ Receptor II for Presentation to T Lymphocytes","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Cryptococcus neoformans; Antigen presentation; Antigen-presenting cell; Dendritic cell; Cell biology; Microbiology; CD14; Mannose receptor; Receptor; Antigen; T cell; Immunology; Immune system; Macrophage; In vitro; Biochemistry","score_opus":0.022405431558856534,"score_gpt":0.26808653358143425,"score_spread":0.2456811020225777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134936774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267,0.0007023729,0.0010298261,0.0003456793,0.00085428456,0.001062106,0.000014668156,0.00011961058,0.0032014588],"genre_scores_gemma":[0.9917335,0.0026699405,0.000941325,0.000743572,0.00020678397,0.0002568011,0.00004373885,0.00002501285,0.0033793442],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99914825,0.00005614586,0.00025512002,0.00020537632,0.00010268418,0.00023239953],"domain_scores_gemma":[0.999352,0.00012039113,0.000059894293,0.00016498064,0.00015959419,0.00014316004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017405121,0.00017650523,0.00026251865,0.00018333601,0.0008075841,0.000045391625,0.000026226795,0.000094449904,0.0002150174],"category_scores_gemma":[0.00009138189,0.00016182737,0.00007114838,0.0002270066,0.00008955747,0.00023882298,0.00008007278,0.0001520864,0.000041105006],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013641554,0.0024866182,0.11204961,0.0019680394,0.0006775265,0.0000055397495,0.012004402,0.00005205027,0.4134717,0.0003772641,0.10461295,0.35093015],"study_design_scores_gemma":[0.012158059,0.008815916,0.21168268,0.000487496,0.00054386014,0.00031631687,0.0014406235,0.002089434,0.14289282,0.00026129765,0.61814696,0.0011645722],"about_ca_topic_score_codex":0.0003316252,"about_ca_topic_score_gemma":0.000041863364,"teacher_disagreement_score":0.51353395,"about_ca_system_score_codex":0.0001325908,"about_ca_system_score_gemma":0.00001485251,"threshold_uncertainty_score":0.6599129},"labels":[],"label_agreement":null},{"id":"W2134938035","doi":"10.1128/iai.00120-06","title":"Identification of the<i>Actinobacillus pleuropneumoniae</i>Leucine-Responsive Regulatory Protein and Its Involvement in the Regulation of In Vivo-Induced Genes","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Council Canada; Cooperative State Research, Education, and Extension Service; Michigan State University; U.S. Department of Agriculture","keywords":"Actinobacillus pleuropneumoniae; Biology; Mutant; Gene; Regulator gene; Escherichia coli; Gene expression; Regulation of gene expression; Microbiology; Molecular biology; Genetics","score_opus":0.019128803739984237,"score_gpt":0.25846840332783316,"score_spread":0.23933959958784892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134938035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854064,0.0006001182,0.0000054656957,0.00010071702,0.000082355684,0.0005544953,0.000012934423,0.0000070162478,0.00009624818],"genre_scores_gemma":[0.99968493,0.000086062915,6.1989675e-7,0.000011992554,0.0000068451277,0.000033094664,0.000007853274,0.0000042499796,0.00016433804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998586,0.0007816745,0.00035507738,0.00012238567,0.000045157838,0.000109715],"domain_scores_gemma":[0.9994028,0.000080548954,0.0001781196,0.00021746107,0.00011456042,0.0000064915957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007251398,0.00008283485,0.00012853238,0.00018588416,0.00016984135,0.000011637621,0.00006607019,0.00009599368,0.000028120996],"category_scores_gemma":[0.000098725286,0.000059389928,0.00003757085,0.0003415657,0.0001363118,0.00010142851,0.00006069405,0.00019113993,0.0000019115398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007583178,0.00019499805,0.023499103,0.00004942841,0.000009899561,1.2638098e-7,0.00029499762,0.000032265998,0.97424,0.0010197125,0.000022892227,0.0005607216],"study_design_scores_gemma":[0.00038011686,0.000042944088,0.49317265,0.000028820301,0.000006052905,0.000007818379,0.0001088592,0.000018008286,0.5058495,0.0001899326,0.00016017191,0.00003516384],"about_ca_topic_score_codex":0.004732278,"about_ca_topic_score_gemma":0.0013743674,"teacher_disagreement_score":0.46967354,"about_ca_system_score_codex":0.000035390698,"about_ca_system_score_gemma":0.000047198886,"threshold_uncertainty_score":0.7153821},"labels":[],"label_agreement":null},{"id":"W2135015883","doi":"10.1128/iai.00143-09","title":"<i>Mycobacterium tuberculosis</i>Cpn60.2 and DnaK Are Located on the Bacterial Surface, Where Cpn60.2 Facilitates Efficient Bacterial Association with Macrophages","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Child and Family Research Institute; Colorado State University","keywords":"Biology; Mycobacterium tuberculosis; Microbiology; Bacteria; Tuberculosis; Heat shock protein; Bacilli; Escherichia coli; Mycobacterium; Polyclonal antibodies; Biochemistry; Antigen; Gene; Immunology; Genetics","score_opus":0.008059058855234488,"score_gpt":0.2381201625699908,"score_spread":0.2300611037147563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135015883","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99793094,0.0001564082,0.00003372075,0.00093419245,0.00015041775,0.00039712674,0.000059835864,0.00003022304,0.00030712568],"genre_scores_gemma":[0.99878967,0.000521165,0.000015244262,0.00012412788,0.00012195778,0.000015344964,0.00010746186,0.000013380261,0.00029165045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861026,0.00047132652,0.00017729832,0.00027599803,0.00018490774,0.0002802179],"domain_scores_gemma":[0.9992985,0.000056687946,0.00008960685,0.00028725088,0.00018128232,0.00008665826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005296212,0.00019833114,0.00017011646,0.00003877003,0.0003958866,0.00017286938,0.000076390126,0.00020353377,0.0000822923],"category_scores_gemma":[0.00022424462,0.00013903952,0.000040931576,0.00013256964,0.000093177936,0.000012005861,0.00007400128,0.00028188422,0.00001188815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005506714,0.00014752602,0.0137427775,0.000026153306,0.00006740378,0.000001284625,0.00010114306,0.00006436494,0.98333,0.0000058632454,0.0005856796,0.0013771092],"study_design_scores_gemma":[0.0013091445,0.0016677425,0.3763138,0.000063415275,0.00002529606,0.000022743052,0.000116480136,0.00008157357,0.601083,0.000009664714,0.019016933,0.00029025905],"about_ca_topic_score_codex":0.00041882755,"about_ca_topic_score_gemma":0.00015418087,"teacher_disagreement_score":0.38224706,"about_ca_system_score_codex":0.000064385495,"about_ca_system_score_gemma":0.000046893856,"threshold_uncertainty_score":0.56698674},"labels":[],"label_agreement":null},{"id":"W2135069465","doi":"10.1128/iai.00034-06","title":"Virulence of<i>Francisella</i>spp. in Chicken Embryos","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Virulence; Francisella tularensis; Biology; Embryo; Microbiology; Francisella; Attenuated vaccine; Tularemia; Virology; Mutant; Genetics; Gene","score_opus":0.007329096841660108,"score_gpt":0.24108981514094402,"score_spread":0.2337607182992839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135069465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912381,0.0004487118,0.00026481462,0.000016926442,0.000097008524,0.00009284678,0.0000065120794,0.0000051087295,0.007829956],"genre_scores_gemma":[0.99892133,0.00064576295,0.00002907065,0.000024425632,0.0000685588,0.0000065952677,0.000026494201,0.0000061024157,0.00027165105],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99945945,0.000075289834,0.00015323139,0.00012095695,0.000062570456,0.0001284996],"domain_scores_gemma":[0.99971515,0.000009860348,0.000038420374,0.00016180202,0.00004840662,0.000026363517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023420015,0.0000723065,0.00009992361,0.000048842983,0.000056174336,0.000012413509,0.00005314614,0.00009381126,0.000043188957],"category_scores_gemma":[0.000045349363,0.00006923318,0.000035234818,0.00011330156,0.000090380934,0.0000047982553,0.00005624537,0.00010397294,0.000006132439],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008733642,0.00009249615,0.06070744,0.000024335362,0.0000053823383,4.4284286e-7,0.000016409618,0.000017699844,0.9327559,0.00009022348,0.00016971394,0.0060326266],"study_design_scores_gemma":[0.00078445714,0.00020331891,0.68501437,0.000015776877,0.0000033835925,0.00000845057,0.0000105961,0.000056389188,0.287182,0.00025889752,0.026333835,0.00012854321],"about_ca_topic_score_codex":0.00297616,"about_ca_topic_score_gemma":0.0006063154,"teacher_disagreement_score":0.6455739,"about_ca_system_score_codex":0.000006547243,"about_ca_system_score_gemma":0.000025172263,"threshold_uncertainty_score":0.44990835},"labels":[],"label_agreement":null},{"id":"W2135171977","doi":"10.1128/iai.02110-14","title":"Superantigens Subvert the Neutrophil Response To Promote Abscess Formation and Enhance Staphylococcus aureus Survival<i>In Vivo</i>","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Superantigen; Staphylococcus aureus; Biology; Microbiology; Toxic shock syndrome; Immune system; Chemokine; Immunology; Enterotoxin; In vivo; T cell; Bacteria; Escherichia coli; Gene","score_opus":0.011419265506836297,"score_gpt":0.2708178264884663,"score_spread":0.25939856098163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135171977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995,0.00009140509,0.0015809878,0.0015920949,0.00018176239,0.0006485775,0.000008972024,0.000054500026,0.0008417189],"genre_scores_gemma":[0.99857724,0.00032104724,0.000086817505,0.00066420087,0.000054680026,0.00002678756,0.000003554039,0.000016333228,0.00024933615],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987511,0.00036979732,0.00027704463,0.00020125849,0.00015448195,0.00024631876],"domain_scores_gemma":[0.9991374,0.00019408413,0.00006894568,0.00035984255,0.00013529278,0.0001044114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011446519,0.00016656534,0.0002499231,0.0001550727,0.0003047402,0.0000660627,0.000068915324,0.00009341273,0.000027985061],"category_scores_gemma":[0.00031367564,0.0001273896,0.000044850683,0.00034696405,0.00013227273,0.00019652076,0.00006677755,0.00032647897,0.000012427201],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023533702,0.00012916894,0.04191371,0.00012456374,0.000019104713,0.000004006981,0.0017003678,0.000017224611,0.945933,0.00013733073,0.00046663056,0.007201539],"study_design_scores_gemma":[0.001232967,0.00044175386,0.797766,0.00017208584,0.000025971554,0.000019338677,0.00016372041,0.00021918431,0.10392197,0.00008415233,0.095746204,0.0002066932],"about_ca_topic_score_codex":0.0008444963,"about_ca_topic_score_gemma":0.0011973287,"teacher_disagreement_score":0.84201103,"about_ca_system_score_codex":0.00006728586,"about_ca_system_score_gemma":0.000038035305,"threshold_uncertainty_score":0.51947975},"labels":[],"label_agreement":null},{"id":"W2135284391","doi":"10.1128/iai.70.6.3053-3060.2002","title":"Characterization of the Mouse Beta Defensin 1, <i>Defb1</i> , Mutant Mouse Model","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":211,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Research (Canada); University of British Columbia","funders":"Medical Research Council; Cystic Fibrosis Trust","keywords":"Biology; Mutant; Defensin; BETA (programming language); Animal model; Genetics; Gene; Endocrinology","score_opus":0.01698963308500363,"score_gpt":0.2015845549330839,"score_spread":0.18459492184808027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135284391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983957,0.000059735168,0.00032415517,0.00012618916,0.00016367184,0.000118928256,0.00006316235,0.000042726115,0.0007057581],"genre_scores_gemma":[0.99389714,0.00048435765,0.0000071870854,0.00019683132,0.000008987069,0.000002704173,0.000033992437,0.000009346658,0.0053594755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99945813,0.00012335178,0.00017406866,0.00009821,0.000018745752,0.00012747443],"domain_scores_gemma":[0.9995895,0.000020176494,0.00012391468,0.00020687465,0.00005053304,0.0000090056765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008572864,0.00010385326,0.00014776365,0.00004184846,0.00031473182,0.000015183379,0.000065654975,0.000120743876,0.00015972585],"category_scores_gemma":[0.000019315663,0.00007740967,0.000070666996,0.00007829878,0.0002267897,0.00014876256,0.00007821406,0.0002267299,0.000027505896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015266369,0.000115507784,0.0016003405,0.000011657786,0.000029883833,3.4572054e-8,0.00039207554,0.000027108563,0.9962649,0.0002854009,0.00023019857,0.0010276397],"study_design_scores_gemma":[0.00035750124,0.00004156226,0.005455054,0.00001209877,0.000023000615,0.000017922988,0.000041380124,0.0003006741,0.9910703,0.000023149714,0.0025583338,0.000099033954],"about_ca_topic_score_codex":0.0003711095,"about_ca_topic_score_gemma":0.00004311466,"teacher_disagreement_score":0.0051945974,"about_ca_system_score_codex":0.000013240007,"about_ca_system_score_gemma":0.0000075779913,"threshold_uncertainty_score":0.31566748},"labels":[],"label_agreement":null},{"id":"W2135355206","doi":"10.1128/iai.72.3.1496-1503.2004","title":"Evidence for a Hybrid Genomic Island in Verocytotoxin-Producing <i>Escherichia coli</i> CL3 (Serotype O113:H21) Containing Segments of EDL933 (Serotype O157:H7) O Islands 122 and 48","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Canada","funders":"National Institute of Allergy and Infectious Diseases; Health Canada","keywords":"Serotype; Virulence; Biology; Verocytotoxin; VTEC; Microbiology; Escherichia coli; Virology; Typing; Outbreak; Gene; Genetics","score_opus":0.03606308675515584,"score_gpt":0.31191993040492644,"score_spread":0.2758568436497706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135355206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99539196,0.0027156463,0.00090663694,0.000054303913,0.00011538571,0.0005728481,0.000015383914,0.000011424888,0.0002164259],"genre_scores_gemma":[0.9959345,0.00330003,0.0003394675,0.00016278672,0.00007040879,0.00008659844,0.000022452923,0.000018015702,0.00006575748],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998939,0.00011964913,0.00026640674,0.0003103125,0.00009896731,0.00026566224],"domain_scores_gemma":[0.9993697,0.00006223335,0.000116223986,0.0002484256,0.00014087472,0.00006253245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060045125,0.00017425779,0.00025159612,0.00007422524,0.00021368601,0.000035911067,0.000092747745,0.00008882336,0.0000047084354],"category_scores_gemma":[0.00054683676,0.00017429204,0.00004982776,0.00013483333,0.00013304774,0.000025784893,0.00021197363,0.00020883899,0.0000011890687],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009289469,0.00014814196,0.14162603,0.0001797333,0.00009373523,0.0000013103892,0.0004553268,0.000069731446,0.8554028,0.000017789727,0.00010182065,0.00097461324],"study_design_scores_gemma":[0.008629503,0.0032801398,0.595577,0.00047708355,0.000068371635,0.000029512634,0.00040312167,0.00027433265,0.3870694,0.00032367132,0.0033033455,0.00056448136],"about_ca_topic_score_codex":0.0011774406,"about_ca_topic_score_gemma":0.0011488558,"teacher_disagreement_score":0.46833342,"about_ca_system_score_codex":0.000056013945,"about_ca_system_score_gemma":0.00013076077,"threshold_uncertainty_score":0.7107423},"labels":[],"label_agreement":null},{"id":"W2135363140","doi":"10.1128/iai.01037-12","title":"Cryptococcus neoformans Requires the ESCRT Protein Vps23 for Iron Acquisition from Heme, for Capsule Formation, and for Virulence","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Burroughs Wellcome Fund","keywords":"Cryptococcus neoformans; Biology; Virulence; ESCRT; Heme; Microbiology; Capsule; Virology; Endosome; Cell biology; Enzyme; Biochemistry; Gene; Intracellular","score_opus":0.039301591742652964,"score_gpt":0.3125079693532563,"score_spread":0.27320637761060335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135363140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9508552,0.0005174869,0.044520006,0.0006074434,0.00026944507,0.00273357,0.00009543952,0.000052538322,0.00034888397],"genre_scores_gemma":[0.9963807,0.00017909729,0.00090326415,0.00026190258,0.00028036875,0.0016887931,0.00010677858,0.000011017837,0.00018806696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994349,0.000028727713,0.00019627137,0.00009146579,0.00005297601,0.00019565647],"domain_scores_gemma":[0.9994113,0.00014110836,0.00008511495,0.0001357753,0.00017549332,0.00005123071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039007264,0.0001105942,0.00015047943,0.00005252769,0.00095617695,0.00004035405,0.000021173842,0.00007157043,0.000014877304],"category_scores_gemma":[0.00017638039,0.000077277116,0.00006757334,0.000053997577,0.00008148037,0.0004613891,0.000027480624,0.000088149805,0.0000020127263],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004129226,0.0021175079,0.08293733,0.0045732004,0.00078773947,2.661997e-7,0.018678993,0.000029296441,0.6588176,0.034199003,0.031719025,0.16201083],"study_design_scores_gemma":[0.008109709,0.0035821479,0.607302,0.00036685436,0.00052946404,0.00004842333,0.0024758652,0.0051190336,0.11905382,0.007181328,0.24567804,0.00055330177],"about_ca_topic_score_codex":0.00054926774,"about_ca_topic_score_gemma":0.000085381,"teacher_disagreement_score":0.53976375,"about_ca_system_score_codex":0.000043947435,"about_ca_system_score_gemma":0.000012503382,"threshold_uncertainty_score":0.7354237},"labels":[],"label_agreement":null},{"id":"W2135546481","doi":"10.1128/iai.68.11.6147-6153.2000","title":"Phagocytosis and Protein Processing Are Required for Presentation of<i>Cryptococcus neoformans</i>Mitogen to T Lymphocytes","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Medical Research Council Canada; Fondation pour la Recherche Médicale; Canadian Foundation for AIDS Research","keywords":"Biology; Cryptococcus neoformans; Cell biology; Antigen processing; Phagocytosis; Intracellular; Microfilament; Phagosome; Antigen presentation; Internalization; T cell; Cell; Microbiology; Biochemistry; Immunology; Immune system; Cytoskeleton","score_opus":0.028446094370680672,"score_gpt":0.3063496738399426,"score_spread":0.2779035794692619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135546481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965755,0.0003384237,0.00047628855,0.00016800042,0.000052994154,0.0009596811,0.000008719821,0.000046149267,0.0013742762],"genre_scores_gemma":[0.9982694,0.00024774193,0.0003143885,0.00008880241,0.00005151698,0.0002238572,0.000007955425,0.000008629234,0.00078770635],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99951047,0.00002683009,0.00017811089,0.00011000899,0.00006279596,0.00011180579],"domain_scores_gemma":[0.9996232,0.000028249324,0.000058789028,0.00008846422,0.00014610049,0.00005523021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012569773,0.00009087503,0.00018293761,0.00008958616,0.0003173109,0.000025562189,0.000013369034,0.000047974463,0.000035909892],"category_scores_gemma":[0.000077840596,0.00007813341,0.00003812421,0.00017197536,0.00005712021,0.00016457606,0.000017674654,0.000056619956,0.0000025852703],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002272405,0.0005191821,0.20114231,0.001965372,0.00024038073,0.0000011132132,0.0049848305,0.00004943063,0.16962242,0.000098157594,0.0011469652,0.6179574],"study_design_scores_gemma":[0.004987238,0.0020851085,0.76992816,0.00067011034,0.000212609,0.0000732303,0.0010575439,0.0011038299,0.18445994,0.00026586273,0.034844514,0.000311888],"about_ca_topic_score_codex":0.00058834325,"about_ca_topic_score_gemma":0.000050072107,"teacher_disagreement_score":0.61764556,"about_ca_system_score_codex":0.000034427303,"about_ca_system_score_gemma":0.000026551323,"threshold_uncertainty_score":0.3186188},"labels":[],"label_agreement":null},{"id":"W2135597362","doi":"10.1128/iai.73.6.3242-3250.2005","title":"β2 Integrins Control the Severity of Murine Lyme Carditis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Arthritis and Musculoskeletal and Skin Diseases; McMaster University","keywords":"Biology; Lyme disease; Carditis; Borrelia burgdorferi; Immunology; Virology; Rheumatic fever; Antibody","score_opus":0.007774385957779768,"score_gpt":0.2293640013520869,"score_spread":0.22158961539430713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135597362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947108,0.0012452013,0.00024806187,0.00025228615,0.00048369094,0.0001853965,0.00005464895,0.0000945638,0.002725377],"genre_scores_gemma":[0.9991548,0.0002788978,0.0000029610853,0.00024607131,0.000058318918,0.0000202264,0.000021756347,0.000008210405,0.00020873791],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990901,0.00038801768,0.00021267435,0.000119331526,0.000025308516,0.00016457075],"domain_scores_gemma":[0.99931353,0.00017907658,0.00010355281,0.00027952224,0.000105038926,0.000019249786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024869997,0.00012641428,0.00021389409,0.000065530534,0.00029653008,0.000012989465,0.00008418323,0.00012545791,0.0007475427],"category_scores_gemma":[0.00017396365,0.0000930347,0.000110400564,0.00011081055,0.0002760407,0.0001204061,0.00006195393,0.00034865405,0.00011227942],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041428796,0.0013455843,0.7249784,0.000074414274,0.0014899293,0.0000021402202,0.0010853945,0.0001427252,0.09413008,0.0020475455,0.0061162896,0.16817322],"study_design_scores_gemma":[0.0013873932,0.00017678102,0.9034818,0.000013911332,0.00009033843,0.00019344073,0.000059710997,0.000015674717,0.023032555,0.00007805127,0.071349524,0.00012083092],"about_ca_topic_score_codex":0.0048230463,"about_ca_topic_score_gemma":0.00086433033,"teacher_disagreement_score":0.1785034,"about_ca_system_score_codex":0.000044017026,"about_ca_system_score_gemma":0.000037390346,"threshold_uncertainty_score":0.8185069},"labels":[],"label_agreement":null},{"id":"W2135646269","doi":"10.1128/iai.00614-08","title":"Evidence for Pore Formation in Host Cell Membranes by ESX-1-Secreted ESAT-6 and Its Role in <i>Mycobacterium marinum</i> Escape from the Vacuole","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":291,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health","keywords":"Mycobacterium marinum; ESAT-6; Vacuole; Biology; Cell biology; Mycobacterium; Host (biology); Microbiology; Membrane; Bacteria; Cytoplasm; Bacterial protein; Biochemistry; Ecology; Genetics","score_opus":0.04038298111285229,"score_gpt":0.281415496468979,"score_spread":0.24103251535612671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135646269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950106,0.0030568657,0.000022170561,0.00079815515,0.00006171063,0.0006564727,0.00004749563,0.000025842664,0.0003206633],"genre_scores_gemma":[0.9846122,0.0146083515,0.000017518149,0.00033658568,0.00004480727,0.000103378356,0.00019926362,0.000009848189,0.000068020825],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910295,0.00016642692,0.00023613953,0.00015654117,0.00012620613,0.00021175425],"domain_scores_gemma":[0.99901825,0.0005652062,0.00006524011,0.00017068411,0.000086168846,0.00009443713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033743368,0.0001243362,0.00019782448,0.00009431089,0.00017295206,0.000041954587,0.000053541713,0.00010505306,0.0000896073],"category_scores_gemma":[0.00046993152,0.00009578239,0.00003730004,0.000212794,0.00004861433,0.00049567193,0.0000662783,0.00028846407,0.0000058364253],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008836702,0.00021658206,0.6841198,0.0002787959,0.000013926851,0.0000078018065,0.0015338517,7.9509033e-7,0.30843076,0.00000334916,0.0016138877,0.0028967548],"study_design_scores_gemma":[0.002117082,0.00030254925,0.9196702,0.00020550516,0.000017787677,0.00004829117,0.00019689246,0.00080104964,0.0724431,0.00003240414,0.0040535126,0.00011160658],"about_ca_topic_score_codex":0.0067890924,"about_ca_topic_score_gemma":0.0010371495,"teacher_disagreement_score":0.23598765,"about_ca_system_score_codex":0.00005267238,"about_ca_system_score_gemma":0.000039568982,"threshold_uncertainty_score":0.99982476},"labels":[],"label_agreement":null},{"id":"W2135746704","doi":"10.1128/iai.72.1.238-246.2004","title":"Single Intranasal Mucosal<i>Mycobacterium bovis</i>BCG Vaccination Confers Improved Protection Compared to Subcutaneous Vaccination against Pulmonary Tuberculosis","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Vaccination; Mycobacterium bovis; Immunology; Tuberculosis; Mycobacterium tuberculosis; BCG vaccine; Nasal administration; Immune system; Medicine; Antigen; Tuberculosis vaccines; Virology; Pathology","score_opus":0.027418339200961848,"score_gpt":0.28780566060732377,"score_spread":0.2603873214063619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135746704","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98709905,0.00010221183,0.0026243916,0.0025015357,0.0003987487,0.0013609505,0.000010541894,0.00021222126,0.005690332],"genre_scores_gemma":[0.9978172,0.0006226433,0.00014958321,0.00084451743,0.00009689234,0.00012957629,0.00015716495,0.000031180614,0.00015121652],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978504,0.0006826773,0.00045807217,0.000378842,0.00019054965,0.0004394236],"domain_scores_gemma":[0.998698,0.00011944372,0.0001205644,0.00032132675,0.00041625364,0.00032440273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077988993,0.00025576726,0.0004043136,0.0004152581,0.00037911726,0.00007096952,0.000055223187,0.00023770386,0.00018427375],"category_scores_gemma":[0.0010446046,0.000225361,0.0001117473,0.0005046012,0.00003454652,0.00028723164,0.000044229295,0.00055855734,0.000038055456],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017969045,0.0011393169,0.03038416,0.00022746106,0.00021186224,0.000023181325,0.0003482481,0.00008502549,0.8219408,0.000121863246,0.0010837483,0.14263743],"study_design_scores_gemma":[0.0032101453,0.003986039,0.8829565,0.00008111052,0.00016095249,0.0014072384,0.00031478604,0.013004399,0.055409648,0.0003318602,0.038476493,0.00066082994],"about_ca_topic_score_codex":0.0016977275,"about_ca_topic_score_gemma":0.00038340126,"teacher_disagreement_score":0.8525723,"about_ca_system_score_codex":0.00040281683,"about_ca_system_score_gemma":0.00008046914,"threshold_uncertainty_score":0.91899544},"labels":[],"label_agreement":null},{"id":"W2135960565","doi":"10.1128/iai.70.9.5269-5273.2002","title":"Mixed Periodontal Th1-Th2 Cytokine Profile in <i>Actinobacillus actinomycetemcomitans</i> -Specific Osteoprotegerin Ligand (or RANK-L)- Mediated Alveolar Bone Destruction In Vivo","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Lawson Health Research Institute; Western University","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; National Institutes of Health; University of Toronto","keywords":"Osteoprotegerin; Actinobacillus; Dental alveolus; In vivo; Periodontitis; Biology; Immunology; Periodontal pathogen; Cytokine; Microbiology; Medicine; Receptor; Dentistry; Porphyromonas gingivalis; Activator (genetics)","score_opus":0.017920680361707783,"score_gpt":0.21674084162740176,"score_spread":0.19882016126569396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135960565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996377,0.0015019377,0.000034153363,0.00004503933,0.00028825388,0.00039748612,0.0000540707,0.00003198051,0.0012701015],"genre_scores_gemma":[0.9964729,0.0028714922,0.00009000591,0.00006118495,0.00010650364,0.00007146072,0.00008645553,0.000020563837,0.00021946654],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874216,0.00022847038,0.0003370764,0.00031334657,0.00011000618,0.00026891494],"domain_scores_gemma":[0.9994304,0.00003163122,0.00010457249,0.00028181556,0.000050945186,0.00010061864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023990824,0.0002214896,0.00026219798,0.00015278524,0.00015030343,0.000056120476,0.000068828034,0.00021240387,0.0002274622],"category_scores_gemma":[0.00017746136,0.00020555247,0.000073750925,0.0002925721,0.00010272915,0.00003911396,0.00007817398,0.0002639261,0.000013234989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074044155,0.0003551153,0.059143316,0.00004146421,0.000019802008,0.000017094784,0.00018707565,0.0000056935987,0.92911077,0.000011393607,0.0003539407,0.010013906],"study_design_scores_gemma":[0.005906119,0.00047306024,0.3562188,0.00006251095,0.000024759767,0.00029024907,0.00058714784,0.00015822795,0.58790445,0.000013166746,0.047799315,0.0005621967],"about_ca_topic_score_codex":0.0011643417,"about_ca_topic_score_gemma":0.0017604855,"teacher_disagreement_score":0.34120634,"about_ca_system_score_codex":0.000047834328,"about_ca_system_score_gemma":0.000031004944,"threshold_uncertainty_score":0.8382186},"labels":[],"label_agreement":null},{"id":"W2136093063","doi":"10.1128/iai.00647-08","title":"Discriminating Virulence Mechanisms among<i>Bacillus anthracis</i>Strains by Using a Murine Subcutaneous Infection Model","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health","keywords":"Virulence; Bacillus anthracis; Biology; Microbiology; Anthrax toxin; Toxin; Plasmid; Strain (injury); Mutant; Virulence factor; Median lethal dose; Bacteria; Gene; Fusion protein; Recombinant DNA; Genetics","score_opus":0.027849893050100917,"score_gpt":0.27197965012363606,"score_spread":0.24412975707353515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136093063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94350857,0.00009827605,0.0552986,0.000010017926,0.00015096806,0.00016458202,0.000034277084,0.00003004049,0.00070466794],"genre_scores_gemma":[0.9976439,0.0016078579,0.0002821958,0.000046458565,0.00006253753,0.0000116167885,0.00007804165,0.000021330794,0.0002460696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989943,0.00010907068,0.0002059881,0.0002741138,0.00014136976,0.0002751726],"domain_scores_gemma":[0.9994481,0.000009311865,0.00008548881,0.00023618549,0.000110209374,0.000110656365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022907028,0.00017931093,0.00015397319,0.000059754315,0.0006346863,0.00004280457,0.00006759545,0.00018374297,0.000031466232],"category_scores_gemma":[0.00010820434,0.00017758438,0.000071932314,0.00012097436,0.00022881612,0.000025117097,0.00013117096,0.00018689214,0.0000031438803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006660645,0.00011209572,0.0026062336,0.00002498459,0.000020800358,0.0000043652476,0.00012614526,0.00029875577,0.99079233,0.00002420613,0.000054549433,0.0058689173],"study_design_scores_gemma":[0.0020130482,0.0019858968,0.03683154,0.00007911522,0.00006711012,0.0011526305,0.000101600825,0.09270483,0.860952,0.0005499989,0.0023914918,0.0011707247],"about_ca_topic_score_codex":0.0024230545,"about_ca_topic_score_gemma":0.00024516054,"teacher_disagreement_score":0.12984033,"about_ca_system_score_codex":0.000035391655,"about_ca_system_score_gemma":0.000054666834,"threshold_uncertainty_score":0.72416806},"labels":[],"label_agreement":null},{"id":"W2136125842","doi":"10.1128/iai.71.9.5087-5096.2003","title":"A Novel Pathogenicity Island Integrated Adjacent to the <i>thrW</i> tRNA Gene of Avian Pathogenic <i>Escherichia coli</i> Encodes a Vacuolating Autotransporter Toxin","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"RNA and protein synthesis mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Pathogenicity island; Pathogenic Escherichia coli; Microbiology; Virulence; Peptide sequence; Bacterial outer membrane; Escherichia coli; Open reading frame; Gene; Genetics","score_opus":0.011890523534487182,"score_gpt":0.22276572457110594,"score_spread":0.21087520103661875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136125842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.932657,0.00035105454,0.06597864,0.000045074634,0.00014787076,0.00033653856,0.000069236376,0.000014003934,0.00040058454],"genre_scores_gemma":[0.9971889,0.0002692389,0.0018737285,0.00043574662,0.000036767746,0.000044914523,0.000032600496,0.000017490618,0.00010059989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894613,0.00025778692,0.00028099713,0.00022138651,0.00009959988,0.0001941091],"domain_scores_gemma":[0.99935955,0.000020312878,0.00011640201,0.00032621375,0.000100392586,0.00007715188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006027506,0.00017739054,0.0001817948,0.00003471766,0.0002139356,0.000026525608,0.00010385871,0.00014280359,0.000044810906],"category_scores_gemma":[0.00012472497,0.00013312126,0.00011109725,0.0001789112,0.00004612233,0.0000074641257,0.000036077654,0.00015246168,0.0000027895833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007098571,0.00011449827,0.0024423588,0.000013714107,0.000045237794,4.2165857e-7,0.00029778652,0.0000422642,0.99403226,0.00004179112,0.00003096472,0.002867688],"study_design_scores_gemma":[0.00049679505,0.00035020633,0.016464205,0.00002843566,0.00003788389,0.000028042996,0.00009427019,0.000049656952,0.9689048,0.000043691573,0.013312712,0.00018931621],"about_ca_topic_score_codex":0.0004747076,"about_ca_topic_score_gemma":0.00067110424,"teacher_disagreement_score":0.064531915,"about_ca_system_score_codex":0.000012722377,"about_ca_system_score_gemma":0.00006799724,"threshold_uncertainty_score":0.54285276},"labels":[],"label_agreement":null},{"id":"W2136143589","doi":"10.1128/iai.71.6.3496-3502.2003","title":"<i>Helicobacter pylori</i> Activates Toll-Like Receptor 4 Expression in Gastrointestinal Epithelial Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Proinflammatory cytokine; Biology; TLR4; TLR2; Helicobacter pylori; Toll-like receptor; Transfection; Receptor; Cell culture; Lipopolysaccharide; Cytokine; Molecular biology; Microbiology; Signal transduction; Cell biology; Immunology; Immune system; Inflammation; Innate immune system","score_opus":0.015458321748897818,"score_gpt":0.2499076633223376,"score_spread":0.23444934157343977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136143589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971384,0.00004078825,0.00025051882,0.00030218883,0.0004918727,0.0002703379,0.000008124241,0.00009355133,0.0014042616],"genre_scores_gemma":[0.99799186,0.00023772265,0.0007164374,0.00057906355,0.00007390647,0.000031266416,0.00001609564,0.000023022923,0.00033060467],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99860936,0.0003063872,0.0003316352,0.00026413318,0.00012429972,0.00036416118],"domain_scores_gemma":[0.99930316,0.00009716199,0.000098932906,0.0002501122,0.00011540112,0.00013523448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000319726,0.00023393126,0.0003267454,0.00019170382,0.00017812813,0.000023564555,0.000042126077,0.00011760579,0.00019028397],"category_scores_gemma":[0.00025169013,0.0002026748,0.00006608935,0.00021609297,0.00014963314,0.00019817284,0.00006284735,0.0007344123,0.00007195676],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031925688,0.0002813201,0.4750398,0.000026006479,0.00003060358,0.000009306252,0.00023844228,0.0000022078955,0.5227733,0.000006980667,0.00058208295,0.00069064397],"study_design_scores_gemma":[0.0038518365,0.0011290866,0.6931376,0.00038329302,0.00004425185,0.000530964,0.00023868072,0.00001116965,0.27275908,0.00003177926,0.027664607,0.00021768056],"about_ca_topic_score_codex":0.00020470461,"about_ca_topic_score_gemma":0.000056694527,"teacher_disagreement_score":0.25001428,"about_ca_system_score_codex":0.00010376374,"about_ca_system_score_gemma":0.00004013977,"threshold_uncertainty_score":0.82648385},"labels":[],"label_agreement":null},{"id":"W2136227127","doi":"10.1128/iai.72.10.5925-5930.2004","title":"Characterization of the Antigenic Lipopolysaccharide O Chain and the Capsular Polysaccharide Produced by <i>Actinobacillus pleuropneumoniae</i> Serotype 13","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Actinobacillus pleuropneumoniae; Serotype; Microbiology; Teichoic acid; Biology; Polysaccharide; Antigen; Biochemistry; Cell wall","score_opus":0.007316701594380848,"score_gpt":0.21639395888599475,"score_spread":0.2090772572916139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136227127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971855,0.0007663567,0.00010969882,0.00086076744,0.00039560784,0.0005242703,0.000052065618,0.000042340907,0.00006337574],"genre_scores_gemma":[0.99800175,0.0014383558,8.384413e-7,0.00019440951,0.000020829984,0.000023534518,0.000026468551,0.00001254969,0.00028125482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987829,0.00048007257,0.00026714976,0.0002032251,0.000047761598,0.00021893154],"domain_scores_gemma":[0.9992746,0.00005606372,0.00016551772,0.00036171547,0.00011373381,0.000028379482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049547624,0.00015409294,0.000211627,0.00007182312,0.00078469684,0.000045121124,0.000118660784,0.00012654327,0.00007786753],"category_scores_gemma":[0.00017269471,0.00009602492,0.000088364766,0.00023959191,0.0005891779,0.00014689442,0.00016604328,0.00041906378,0.00001951481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012347128,0.000116906645,0.005897392,0.000024387262,0.00008042969,1.6687827e-7,0.00031863508,0.0000027595718,0.9918002,0.0007455319,0.000031683,0.0008584467],"study_design_scores_gemma":[0.0021284078,0.000083459134,0.039561126,0.00003375508,0.000057919777,0.00009148189,0.000056402252,0.0000050038248,0.9558152,0.00013062425,0.0019059057,0.00013070279],"about_ca_topic_score_codex":0.008205268,"about_ca_topic_score_gemma":0.00016356938,"teacher_disagreement_score":0.035984978,"about_ca_system_score_codex":0.000031993724,"about_ca_system_score_gemma":0.000079511854,"threshold_uncertainty_score":0.9983992},"labels":[],"label_agreement":null},{"id":"W2136273040","doi":"10.1128/iai.70.5.2715-2720.2002","title":"Differential Persistence among Genomovars of the<i>Burkholderia cepacia</i>Complex in a Murine Model of Pulmonary Infection","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"British Columbia Lung Association; Wellcome Trust; Cystic Fibrosis Foundation","keywords":"Burkholderia cepacia complex; Burkholderia cenocepacia; Burkholderia; Biology; Microbiology; Persistence (discontinuity); Cyclophosphamide; Immunology; Cystic fibrosis; Bacteria; Chemotherapy","score_opus":0.05924408873953437,"score_gpt":0.2753520884471822,"score_spread":0.2161079997076478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136273040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770874,0.000076987155,0.0003117746,0.000050854233,0.00006426826,0.00027017327,0.000007469698,0.000015811846,0.0014939265],"genre_scores_gemma":[0.99931616,0.00038011032,0.00008356893,0.000010096835,0.0000149844145,0.000011594406,0.000004953495,0.00000755273,0.0001709732],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991951,0.00010065022,0.00025778252,0.00011853052,0.00018884867,0.00013909489],"domain_scores_gemma":[0.9994643,0.00004157142,0.00010822764,0.0002407236,0.00009610559,0.000049126615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011055519,0.00009545665,0.00021981538,0.00015597047,0.00008867261,0.000006971657,0.000047298934,0.00005511276,0.00021706226],"category_scores_gemma":[0.00016049092,0.00007548502,0.00008852808,0.00030721398,0.00030709244,0.00013375527,0.000091619,0.00025176525,0.000001206593],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011336325,0.0004955627,0.41803238,0.00023994537,0.000023889812,8.3864427e-7,0.00043062054,0.0004127918,0.5759866,0.000016370226,0.000015709185,0.0042319424],"study_design_scores_gemma":[0.00062739744,0.00014734922,0.89983755,0.00012244588,0.000021526928,0.000025604051,0.000037575865,0.083477035,0.01549997,0.00007915979,0.000065086075,0.000059268958],"about_ca_topic_score_codex":0.002298741,"about_ca_topic_score_gemma":0.00023584934,"teacher_disagreement_score":0.5604866,"about_ca_system_score_codex":0.00005587005,"about_ca_system_score_gemma":0.000016728463,"threshold_uncertainty_score":0.34750238},"labels":[],"label_agreement":null},{"id":"W2136427891","doi":"10.1128/iai.01030-06","title":"Prebiotic Galactooligosaccharides Reduce Adherence of Enteropathogenic<i>Escherichia coli</i>to Tissue Culture Cells","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":379,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Prebiotic; Microbiology; Biology; Enteropathogenic Escherichia coli; Escherichia coli; Gastrointestinal tract; Pathogen; Pilus; Biochemistry","score_opus":0.013221797810199344,"score_gpt":0.22849375081470522,"score_spread":0.21527195300450588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136427891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981656,0.00014582444,0.000032738288,0.00007109042,0.00016349097,0.00019655323,0.000041723702,0.00003662172,0.0011463553],"genre_scores_gemma":[0.9992385,0.000108710534,0.00009023247,0.00008326211,0.00006307343,0.0000051994966,0.000025864956,8.5269124e-7,0.00038432115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99935853,0.00007319149,0.00018988569,0.00015055471,0.000077713616,0.00015012072],"domain_scores_gemma":[0.99970376,0.000023313432,0.000082943254,0.000059306432,0.00007031931,0.00006035914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012571024,0.00011140596,0.00013636179,0.000012611953,0.00015521861,0.00004488145,0.00009420171,0.00008682703,0.00010428005],"category_scores_gemma":[0.000015591066,0.000050457344,0.00004295546,0.00024229898,0.00005023131,0.00008223742,0.00006518805,0.0001312437,0.000016463819],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002065769,0.0001388155,0.0050478904,0.000011267766,0.000005506572,3.0713824e-7,0.000061536666,0.0000047731833,0.9895564,0.00007959621,0.00034876514,0.004724529],"study_design_scores_gemma":[0.00010487715,0.00069991883,0.3656205,0.000031768064,0.000012587027,0.0000040641435,0.00004490405,0.000015202361,0.6238035,0.0001805425,0.009356067,0.0001260718],"about_ca_topic_score_codex":0.0023900673,"about_ca_topic_score_gemma":0.0003368238,"teacher_disagreement_score":0.36575285,"about_ca_system_score_codex":0.000013732101,"about_ca_system_score_gemma":0.000004946307,"threshold_uncertainty_score":0.36130828},"labels":[],"label_agreement":null},{"id":"W2136612638","doi":"10.1128/iai.00122-08","title":"ZapA, a Virulence Factor in a Rat Model of <i>Proteus mirabilis</i> -Induced Acute and Chronic Prostatitis","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Alcohol Consumption and Health Effects","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Proteus mirabilis; Prostatitis; Virulence; Biology; Virulence factor; Microbiology; Immunology; Bacteria; Pseudomonas aeruginosa; Prostate; Genetics; Gene","score_opus":0.0946871476412528,"score_gpt":0.3503979246408964,"score_spread":0.2557107769996436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136612638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984548,0.00028012224,0.00017062659,0.00015550622,0.00006233206,0.00065418007,0.0000071057493,0.000032523505,0.0001828222],"genre_scores_gemma":[0.9966642,0.0028226636,0.00010629895,0.0002486825,0.000011669292,0.000042803553,0.0000046648147,0.000007677262,0.000091328955],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999345,0.000082788654,0.00020943246,0.00013152206,0.0000931949,0.0001380693],"domain_scores_gemma":[0.99956995,0.00004898568,0.00007463706,0.00014330537,0.00007161629,0.00009147579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013241393,0.00009861346,0.00022967615,0.00012612235,0.00012606767,0.0000053805657,0.000017749458,0.00008768497,0.000029152017],"category_scores_gemma":[0.000082896564,0.00008911806,0.000026831649,0.00014683108,0.00011359298,0.00012935504,0.000028479511,0.0002914918,0.0000041974795],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034951212,0.00034108773,0.30671772,0.0008866939,0.000034757802,0.000014518156,0.0031758146,0.00000982389,0.6695204,0.000072482886,0.000071151095,0.01880605],"study_design_scores_gemma":[0.0045434665,0.0013397029,0.9214173,0.00029290788,0.000037569094,0.00030737184,0.000032441763,0.008940911,0.06258747,0.00007215855,0.0002445331,0.00018419063],"about_ca_topic_score_codex":0.00094870914,"about_ca_topic_score_gemma":0.00025407373,"teacher_disagreement_score":0.61469954,"about_ca_system_score_codex":0.000082829385,"about_ca_system_score_gemma":0.00018361454,"threshold_uncertainty_score":0.3634129},"labels":[],"label_agreement":null},{"id":"W2136732064","doi":"10.1128/iai.73.6.3636-3645.2005","title":"Infection of Newborn Piglets with <i>Bordetella pertussis</i> : a New Model for Pertussis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Shared Health; University of Alberta; University of Saskatchewan","funders":"IWK Health Centre; Dalhousie University","keywords":"Bordetella pertussis; Whooping cough; Immunology; Bronchoalveolar lavage; Pertussis toxin; Immunity; Biology; Microbiology; Lymphocytosis; Immune system; Pertussis vaccine; Virology; Medicine; Lung; Vaccination; Bacteria; Immunization; Internal medicine; Receptor; G protein","score_opus":0.020833670671442286,"score_gpt":0.2542083840216479,"score_spread":0.23337471335020563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136732064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726588,0.0003237943,0.024922287,0.0003478573,0.00032567172,0.0003074844,0.000022829452,0.00010434911,0.0009869403],"genre_scores_gemma":[0.9963807,0.0005863265,0.0006168167,0.00010884212,0.00009034561,0.000034175817,0.00005424314,0.000019189843,0.002109359],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992323,0.000084206906,0.00026952612,0.00018934658,0.000015552585,0.00020908393],"domain_scores_gemma":[0.9993577,0.00008278539,0.00014397917,0.00022018988,0.00015897652,0.000036377452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015968928,0.00018472633,0.0002680976,0.00015476395,0.000364798,0.000026299074,0.000046328187,0.00021502681,0.00021776682],"category_scores_gemma":[0.000062047715,0.00014578976,0.00009881657,0.00017132981,0.000089035435,0.00025833366,0.000037451424,0.00020787667,0.000016984572],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011493788,0.0007955974,0.041559864,0.0001019644,0.0004240091,7.1651456e-8,0.0014002102,0.0010736856,0.62046885,0.00079532556,0.0066125956,0.32561845],"study_design_scores_gemma":[0.0076482208,0.0020786354,0.16359514,0.00013325944,0.00036732864,0.0002432549,0.000068898386,0.0049026352,0.115719184,0.00036395024,0.7041592,0.0007202942],"about_ca_topic_score_codex":0.0053431843,"about_ca_topic_score_gemma":0.0024083054,"teacher_disagreement_score":0.6975466,"about_ca_system_score_codex":0.00003494579,"about_ca_system_score_gemma":0.00008899881,"threshold_uncertainty_score":0.8077332},"labels":[],"label_agreement":null},{"id":"W2137058189","doi":"10.1128/iai.00052-06","title":"Major Role for FeoB in <i>Campylobacter jejuni</i> Ferrous Iron Acquisition, Gut Colonization, and Intracellular Survival","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":217,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Campylobacter jejuni; Biology; Microbiology; Mutant; Campylobacter; Wild type; Cecum; Ferrichrome; Escherichia coli; Colonization; Bacteria; Gene; Biochemistry; Genetics; Bacterial outer membrane; Ecology","score_opus":0.010131690894587804,"score_gpt":0.2167669872050413,"score_spread":0.20663529631045352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137058189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99800843,0.00033325545,0.00007098107,0.0005989269,0.00015953429,0.0002453692,0.00002096166,0.000048138878,0.0005144114],"genre_scores_gemma":[0.9989835,0.00015618635,0.000030385116,0.00024553307,0.00017257745,0.000026949025,0.00022899667,0.000001448236,0.00015444584],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990915,0.0002156241,0.00023591431,0.00020020147,0.000049293416,0.00020746162],"domain_scores_gemma":[0.9995294,0.00022705866,0.000078896155,0.000048059963,0.000071312665,0.000045222347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040591054,0.00012300012,0.0001825208,0.000022203063,0.00027410936,0.00005493424,0.000051540566,0.00015020506,0.0000889699],"category_scores_gemma":[0.00005244346,0.00006377797,0.000035665314,0.0001808808,0.00007646858,0.0001350303,0.00004277677,0.00011120977,0.000004822875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008764141,0.00019101151,0.86602163,0.000013967241,0.00000651151,8.0248464e-7,0.000059669128,0.000011330806,0.12464479,0.0011186397,0.0002973875,0.0075465865],"study_design_scores_gemma":[0.00038029745,0.00021012622,0.98050606,0.000007821615,0.0000102256545,0.000014948374,0.00007790833,0.00010884826,0.0008462592,0.004317986,0.013379447,0.00014006939],"about_ca_topic_score_codex":0.00551414,"about_ca_topic_score_gemma":0.004924425,"teacher_disagreement_score":0.123798534,"about_ca_system_score_codex":0.000026238371,"about_ca_system_score_gemma":0.0000043345776,"threshold_uncertainty_score":0.8335767},"labels":[],"label_agreement":null},{"id":"W2137216847","doi":"10.1128/iai.70.8.4068-4074.2002","title":"Lipopolysaccharide-Binding Protein- and CD14-Dependent Activation of Mitogen-Activated Protein Kinase p38 by Lipopolysaccharide in Human Neutrophils Is Associated with Priming of Respiratory Burst","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"IWK Health Centre; Medical Research Council Canada","keywords":"Respiratory burst; Lipopolysaccharide; CD14; Biology; Priming (agriculture); p38 mitogen-activated protein kinases; Protein kinase A; TLR4; Lipopolysaccharide binding protein; Mitogen-activated protein kinase; Cell biology; Immunology; Kinase; Signal transduction; Immune system","score_opus":0.025871455276328916,"score_gpt":0.23978433620322787,"score_spread":0.21391288092689895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137216847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985558,0.00029510472,0.00005007435,0.000043691663,0.00006913721,0.0008206357,0.000040391446,0.000049326864,0.00007584289],"genre_scores_gemma":[0.9993529,0.000046851022,0.000009301085,0.000042952557,0.0000098207365,0.00007236301,0.000034528995,0.000026945574,0.00040436868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982899,0.00048601275,0.00051748473,0.00032945318,0.000086337175,0.00029083306],"domain_scores_gemma":[0.9989387,0.00006668626,0.0005364552,0.00026224458,0.00015875512,0.00003719835],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00039767512,0.000273335,0.00046439286,0.00037005564,0.00032635863,0.000022380469,0.00010278204,0.00028868375,0.0001717623],"category_scores_gemma":[0.0001250046,0.00025229258,0.00004937787,0.00025481358,0.00026013915,0.00035629468,0.000094921175,0.00057131745,0.0000036932768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019188899,0.0003986967,0.002371233,0.000062553336,0.00015023301,0.000002012799,0.0006773561,8.954372e-7,0.9943399,0.00026066974,0.000016549115,0.0015280495],"study_design_scores_gemma":[0.002375102,0.00097544346,0.0034470118,0.0004547988,0.00003386819,0.000007085312,0.00023396387,0.000002996284,0.9920597,0.00006959798,0.000092584116,0.00024782628],"about_ca_topic_score_codex":0.0021655313,"about_ca_topic_score_gemma":0.0000719899,"teacher_disagreement_score":0.0022801403,"about_ca_system_score_codex":0.0000992424,"about_ca_system_score_gemma":0.000029472452,"threshold_uncertainty_score":0.9999929},"labels":[],"label_agreement":null},{"id":"W2137314066","doi":"10.1128/iai.00739-06","title":"<i>N</i> -Acetyllactosamine Conjugated to Gold Nanoparticles Inhibits Enteropathogenic <i>Escherichia coli</i> Colonization of the Epithelium in Human Intestinal Biopsy Specimens","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Glycomics Centre","keywords":"Enteropathogenic Escherichia coli; Microbiology; Biology; Pilus; Epithelium; Escherichia coli; Ileum; Intestinal epithelium; Duodenum; Intestinal mucosa; Colonization; Biopsy; Pathology; Internal medicine; Biochemistry; Medicine","score_opus":0.009726465251530474,"score_gpt":0.24873023745931214,"score_spread":0.23900377220778166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137314066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985726,0.00012714606,0.00008979659,0.00012650088,0.00006538483,0.00029224108,0.000010883484,0.000011535263,0.00070389925],"genre_scores_gemma":[0.99946624,0.000053722193,0.00007365569,0.00011029709,0.000040359308,0.00002621942,0.000020566084,0.000010796895,0.00019815553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991262,0.00021505845,0.00023721022,0.00015874655,0.000091520444,0.00017124318],"domain_scores_gemma":[0.9995295,0.000016895772,0.00008457112,0.0001975698,0.00013595933,0.000035546323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024967335,0.00011435122,0.00012798703,0.000047436482,0.00012167507,0.000020090105,0.000084839165,0.000060351682,0.0000051764846],"category_scores_gemma":[0.00016088742,0.00009533639,0.000037664755,0.00037090614,0.00015244479,0.0000070496803,0.00022310393,0.0001269816,0.0000015526451],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052836058,0.00014397534,0.1507705,0.000015142186,0.000009390751,2.7691243e-7,0.000044698427,0.00004516913,0.8486801,0.000055435423,0.00013288534,0.000049613234],"study_design_scores_gemma":[0.0003792699,0.00021928601,0.4017587,0.00002297239,0.000005376864,0.000005306133,0.000022424538,0.00002205952,0.5965368,0.000020938469,0.00093857275,0.00006827616],"about_ca_topic_score_codex":0.0011849228,"about_ca_topic_score_gemma":0.0020954914,"teacher_disagreement_score":0.25214326,"about_ca_system_score_codex":0.000025590041,"about_ca_system_score_gemma":0.00003215705,"threshold_uncertainty_score":0.38877052},"labels":[],"label_agreement":null},{"id":"W2137364945","doi":"10.1128/iai.72.1.38-45.2004","title":"Long-Term Effect of Heat Shock Protein 60 from <i>Actinobacillus actinomycetemcomitans</i> on Epithelial Cell Viability and Mitogen-Activated Protein Kinases","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Heat shock proteins research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kinexus Bioinformatics Corporation (Canada); University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; HSP60; Heat shock protein; Kinase; Cell biology; HaCaT; p38 mitogen-activated protein kinases; Protein kinase A; Viability assay; Mitogen-activated protein kinase; MAPK/ERK pathway; Molecular biology; Keratinocyte; Cell culture; Cell; Biochemistry; Hsp70","score_opus":0.011705939269776372,"score_gpt":0.26288626143765026,"score_spread":0.2511803221678739,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137364945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968788,0.00019004155,0.00012120885,0.000018093104,0.00008599408,0.0016118552,0.00006231902,0.000024412397,0.001007299],"genre_scores_gemma":[0.9994058,0.0000583672,0.00003655864,0.000013023833,0.00004871873,0.00015970488,0.000056904733,0.000025240848,0.00019568208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975802,0.0012689852,0.0002732238,0.00041551597,0.00017922022,0.00028291147],"domain_scores_gemma":[0.999053,0.00009558447,0.00007849719,0.0005212622,0.00010995087,0.00014168976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056879345,0.00027023142,0.00030472313,0.00007365733,0.0002379292,0.00004227419,0.00009185855,0.00027313057,0.000060888593],"category_scores_gemma":[0.0006200255,0.00023649882,0.00009179449,0.0001356292,0.00019561838,0.000017931032,0.00010860686,0.00038818087,0.000005347107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000950787,0.00021521474,0.042280857,0.00017762739,0.00004753504,0.0000024591338,0.000034565986,0.0000035563817,0.953799,0.0000021774079,0.000006007359,0.0024802084],"study_design_scores_gemma":[0.0016485164,0.0023989782,0.041622948,0.00006166534,0.000014826446,0.000010045269,0.000010279133,0.000004942935,0.95316714,0.000015841795,0.00083403976,0.00021077471],"about_ca_topic_score_codex":0.0017314944,"about_ca_topic_score_gemma":0.00009107709,"teacher_disagreement_score":0.0025270223,"about_ca_system_score_codex":0.000049188307,"about_ca_system_score_gemma":0.00008052146,"threshold_uncertainty_score":0.9644142},"labels":[],"label_agreement":null},{"id":"W2137369730","doi":"10.1128/iai.01540-07","title":"Analysis of the<i>Actinobacillus pleuropneumoniae</i>ArcA Regulon Identifies Fumarate Reductase as a Determinant of Virulence","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Deutsche Forschungsgemeinschaft; Ministry of Education, Libya","keywords":"Biology; Actinobacillus pleuropneumoniae; Regulon; Microbiology; Virulence; Reductase; Biochemistry; Mutant; Escherichia coli; Citric acid cycle; Enzyme; Gene; Serotype","score_opus":0.021501182943887732,"score_gpt":0.2737944372970168,"score_spread":0.25229325435312905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137369730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981604,0.0005702361,0.000016974442,0.000025300642,0.00026134067,0.00013954472,0.000060270715,0.000019602749,0.00074630347],"genre_scores_gemma":[0.99756455,0.0013348168,0.0000016978775,0.00001889085,0.0000050187386,0.000007523323,0.000017650615,0.0000055853097,0.0010442719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988011,0.00048218586,0.00032871755,0.00016622197,0.000049505747,0.00017227011],"domain_scores_gemma":[0.99903935,0.00010111673,0.0002130833,0.00042023044,0.00020110456,0.000025132047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002719568,0.00011656863,0.00029176674,0.0003099035,0.0005156502,0.000009714622,0.00011662283,0.00010439964,0.00055519724],"category_scores_gemma":[0.00020254016,0.00008875084,0.00022444525,0.0008642715,0.0007553924,0.00011791659,0.00015642408,0.00025363654,0.000028386756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011544681,0.00024889997,0.06554844,0.00003624206,0.00047073016,0.000001990626,0.0004352583,0.000022498638,0.93149054,0.00007839124,0.00015175456,0.0013998096],"study_design_scores_gemma":[0.000367082,0.00014095921,0.47563186,0.000029796865,0.00030671686,0.00019247974,0.00008878843,0.000016432448,0.52200115,0.00004066726,0.0010829266,0.000101161124],"about_ca_topic_score_codex":0.00851258,"about_ca_topic_score_gemma":0.00032049415,"teacher_disagreement_score":0.4100834,"about_ca_system_score_codex":0.000023530307,"about_ca_system_score_gemma":0.00009049347,"threshold_uncertainty_score":0.99808985},"labels":[],"label_agreement":null},{"id":"W2138035164","doi":"10.1128/iai.01662-06","title":"Surface Expression of Toll-Like Receptor 9 Is Upregulated on Intestinal Epithelial Cells in Response to Pathogenic Bacterial DNA","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Alberta","funders":"Fondation pour la Recherche Médicale; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Biology; Salmonella enterica; Microbiology; Secretion; TLR9; Toll-Like Receptor 9; Molecular biology; Gene expression; Salmonella; Gene; Bacteria; DNA methylation","score_opus":0.010604075586078012,"score_gpt":0.24512586484603768,"score_spread":0.23452178925995967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138035164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998198,0.000051101262,0.00018021534,0.000065217915,0.0010237001,0.0002672181,0.000018785724,0.000040459672,0.00015535194],"genre_scores_gemma":[0.9991726,0.000046271987,0.000058088604,0.00007449477,0.000018128216,0.0000040335112,0.000040939736,0.000011491449,0.00057394104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982435,0.0008498552,0.00044245776,0.00018290675,0.0000429589,0.00023832604],"domain_scores_gemma":[0.99910796,0.0003742664,0.00014385102,0.00025781244,0.000088308036,0.000027780556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015592166,0.00015850666,0.00023171146,0.00026008175,0.00014538306,0.000012064299,0.000083509236,0.0002598011,0.0005596516],"category_scores_gemma":[0.00024977018,0.0001476889,0.00006176064,0.00024267191,0.00008753544,0.000119626355,0.000077613055,0.00030577165,0.00019896234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017960701,0.00016132434,0.00085691456,0.000010465536,0.0000136558165,0.0000012375456,0.0012295942,0.000012696416,0.9753935,0.000007629919,0.00032491298,0.0040273787],"study_design_scores_gemma":[0.0013780307,0.00077433424,0.115154214,0.000106140455,0.0000066097905,0.000017480894,0.00008871596,0.000002194449,0.8693355,0.000009999008,0.012994891,0.00013189799],"about_ca_topic_score_codex":0.00033195835,"about_ca_topic_score_gemma":0.000026136731,"teacher_disagreement_score":0.1142973,"about_ca_system_score_codex":0.000068138375,"about_ca_system_score_gemma":0.00004836405,"threshold_uncertainty_score":0.61277926},"labels":[],"label_agreement":null},{"id":"W2138059206","doi":"10.1128/iai.72.1.29-37.2004","title":"Role of Siderophore Biosynthesis in Virulence of <i>Staphylococcus aureus</i> : Identification and Characterization of Genes Involved in Production of a Siderophore","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":231,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Biology; Virulence; Staphylococcus aureus; Microbiology; Mutant; Operon; Pathogenicity island; Gene; Pathogen; Bacteria; Genetics","score_opus":0.011822882227542887,"score_gpt":0.24013480861378309,"score_spread":0.2283119263862402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138059206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988316,0.0005424212,0.000051282077,0.00002756916,0.000055830194,0.000420754,0.000012720389,0.000006514117,0.000051294406],"genre_scores_gemma":[0.9978737,0.0019881534,0.00008089134,0.0000061786395,0.0000062150407,0.000010966807,0.000012166531,0.000009359484,0.000012360351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988052,0.00017523766,0.0006365393,0.00016709215,0.00012305863,0.000092847964],"domain_scores_gemma":[0.9989434,0.000055623488,0.0004788675,0.00024031741,0.0002572924,0.00002449556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043246875,0.00010830821,0.00036324293,0.0003704657,0.000027915827,0.0000037069854,0.00003260575,0.00010562082,0.0000098821365],"category_scores_gemma":[0.0004592736,0.000109106586,0.000041372412,0.0005768656,0.00025797883,0.00013981706,0.000020358355,0.00011925783,1.4600413e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001423373,0.00022770395,0.3259592,0.00040240667,0.000011505258,1.6882095e-7,0.00078219053,0.0000053976073,0.6699344,0.000037225305,5.4386163e-7,0.002496924],"study_design_scores_gemma":[0.00025622518,0.00006870048,0.46563426,0.0002368339,0.000016710845,0.0000011246924,0.0003069334,0.0000180506,0.53332186,0.00007999432,0.000020210713,0.000039092723],"about_ca_topic_score_codex":0.0010791539,"about_ca_topic_score_gemma":0.00041432673,"teacher_disagreement_score":0.13967505,"about_ca_system_score_codex":0.000046734007,"about_ca_system_score_gemma":0.000106758824,"threshold_uncertainty_score":0.44492373},"labels":[],"label_agreement":null},{"id":"W2138065849","doi":"10.1128/iai.68.12.7166-7171.2000","title":"<i>fbpABC</i> Gene Cluster in <i>Neisseria meningitidis</i> Is Transcribed as an Operon","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; Foothills Medical Centre; University of Calgary","funders":"","keywords":"Operon; Biology; Neisseria meningitidis; Complementary DNA; Locus (genetics); Gene; Molecular biology; Neisseria; Genetics; Reverse transcriptase; Transcription (linguistics); Neisseriaceae; Oligonucleotide; Gene cluster; Polymerase chain reaction; Bacteria; Escherichia coli","score_opus":0.0107472878681123,"score_gpt":0.2620622163852839,"score_spread":0.2513149285171716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138065849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98387706,0.00017417295,0.00008174815,0.00045029857,0.00012229006,0.00026948893,0.0000055321,0.00007660243,0.014942831],"genre_scores_gemma":[0.9948472,0.00097004074,0.000117068106,0.0015720071,0.000045132856,0.00001714074,0.000061568215,0.000019411289,0.002350432],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992254,0.000069537884,0.00022414533,0.00019087957,0.00009072095,0.00019936769],"domain_scores_gemma":[0.9995887,0.000008325208,0.000021796555,0.00022465135,0.000034412507,0.00012210628],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021581998,0.00014494969,0.00022564169,0.00008592513,0.00013597321,0.00002518656,0.00003978858,0.00011882176,0.0017042777],"category_scores_gemma":[0.0000031959032,0.00012752933,0.000062005856,0.00018409577,0.00005206429,0.00021537226,0.000004425758,0.00026688844,0.000047092726],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006009516,0.0032102806,0.07691006,0.00044140813,0.00020499814,0.00010802689,0.018225161,0.000058019337,0.76287055,0.0007167471,0.00066091534,0.13058431],"study_design_scores_gemma":[0.014173673,0.002253845,0.5296548,0.00039710716,0.0002560238,0.0005238909,0.000970082,0.00037039086,0.31811816,0.0013016122,0.13112415,0.0008562295],"about_ca_topic_score_codex":0.0016878218,"about_ca_topic_score_gemma":0.0005590958,"teacher_disagreement_score":0.45274478,"about_ca_system_score_codex":0.000032982312,"about_ca_system_score_gemma":0.000038618557,"threshold_uncertainty_score":0.9992083},"labels":[],"label_agreement":null},{"id":"W2138358104","doi":"10.1128/iai.05305-11","title":"Mutagenic Analysis of the Clostridium difficile Flagellar Proteins, FliC and FliD, and Their Contribution to Virulence in Hamsters","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Glycomics Centre","keywords":"Flagellum; Biology; Virulence; Microbiology; Motility; Clostridium difficile; Mutant; Gene; Pseudomembranous colitis; Genetics; Antibiotics","score_opus":0.025651119315065408,"score_gpt":0.2651864120569745,"score_spread":0.2395352927419091,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138358104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99828863,0.00039516366,0.0000939765,0.00017189629,0.000047555408,0.000702451,0.000028817896,0.000019041385,0.00025248132],"genre_scores_gemma":[0.9990269,0.00077148335,0.000013649086,0.000074600415,0.000015189475,0.00002760214,0.0000097079255,0.000008368673,0.000052516574],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893683,0.00018693782,0.00028797015,0.00022428413,0.00014707797,0.00021687802],"domain_scores_gemma":[0.9992534,0.00009138604,0.00007838167,0.00032751568,0.00012502204,0.00012430122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046569036,0.00015209413,0.00035509298,0.00037776917,0.00016005407,0.000021765685,0.00006138878,0.00010820574,0.00005964169],"category_scores_gemma":[0.00034038382,0.00010614581,0.00008849043,0.0010897984,0.00019013324,0.00006651033,0.00016870642,0.00031964178,0.0000021223716],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000735563,0.0005210246,0.2592036,0.00015578287,0.00047840143,0.0000052164564,0.0031526422,0.000012940274,0.72520095,0.000080068756,0.00002367612,0.010430093],"study_design_scores_gemma":[0.0008181038,0.00033792516,0.54527426,0.00006995215,0.00018950878,0.000017190137,0.00028849248,0.00061621284,0.45195854,0.000018686418,0.00031417867,0.00009696318],"about_ca_topic_score_codex":0.003319425,"about_ca_topic_score_gemma":0.0006537167,"teacher_disagreement_score":0.28607064,"about_ca_system_score_codex":0.000071850256,"about_ca_system_score_gemma":0.00004975873,"threshold_uncertainty_score":0.5018},"labels":[],"label_agreement":null},{"id":"W2138406202","doi":"10.1128/iai.01423-09","title":"<i>Staphylococcus aureus</i> Fur Regulates the Expression of Virulence Factors That Contribute to the Pathogenesis of Pneumonia","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Argonne National Laboratory; National Heart, Lung, and Blood Institute; National Institute of General Medical Sciences; U.S. Public Health Service; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Vanderbilt University Medical Center","keywords":"Virulence; Biology; Staphylococcus aureus; Microbiology; Pathogenesis; Pathogen; Virulence factor; Staphylococcal infections; Bacteria; Gene; Immunology; Genetics","score_opus":0.014159559255474845,"score_gpt":0.2577972301530731,"score_spread":0.24363767089759825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138406202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811345,0.00016204001,0.00018454502,0.00047187603,0.0002912277,0.0004973336,0.000060700044,0.00002756658,0.00019127551],"genre_scores_gemma":[0.99942243,0.00022191818,0.000044380322,0.00016506789,0.00003518527,0.000014192916,0.0000069138955,0.0000123632035,0.00007755741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906665,0.00013527463,0.00027592946,0.00014619544,0.00020401234,0.00017191935],"domain_scores_gemma":[0.99854934,0.00030564496,0.0002241256,0.0006071788,0.00023965932,0.00007401953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047053918,0.0001514149,0.00027659218,0.00007143923,0.00027501566,0.000016862046,0.00015527845,0.00011543878,0.000045302124],"category_scores_gemma":[0.00041607328,0.000080747996,0.00011832074,0.0002693369,0.00031810603,0.00007688064,0.000116299314,0.00036798615,0.0000029324397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116563184,0.00006769786,0.15932563,0.000040033825,0.000017971324,4.0920577e-7,0.00047243267,0.0000042890483,0.8385624,0.000036459835,0.00020859207,0.001147501],"study_design_scores_gemma":[0.0001828435,0.000077580444,0.4954034,0.0000666439,0.000030119501,0.0000027308604,0.00015808742,0.0000035406533,0.49977475,0.000025686584,0.0042259484,0.00004863037],"about_ca_topic_score_codex":0.00097470416,"about_ca_topic_score_gemma":0.00033702032,"teacher_disagreement_score":0.33878765,"about_ca_system_score_codex":0.000014854948,"about_ca_system_score_gemma":0.000047193727,"threshold_uncertainty_score":0.3292808},"labels":[],"label_agreement":null},{"id":"W2138473556","doi":"10.1128/iai.71.2.838-844.2003","title":"<i>Entamoeba histolytica</i> Cysteine Proteinases Disrupt the Polymeric Structure of Colonic Mucin and Alter Its Protective Function","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Mucin; Entamoeba histolytica; Cysteine; Cysteine protease; Biology; Mucus; Biochemistry; Intestinal mucosa; Microbiology; Intestinal epithelium; Molecular biology; Epithelium; Enzyme","score_opus":0.00902133389270602,"score_gpt":0.24507261049195184,"score_spread":0.23605127659924582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138473556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641764,0.0007871019,0.00019241183,0.000107403466,0.00014277984,0.0010127658,0.000009566664,0.00003283556,0.0012975186],"genre_scores_gemma":[0.9993814,0.00008703578,0.000016559934,0.00009950081,0.000024905828,0.000057207744,0.000009249582,0.000011360585,0.00031274933],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99929684,0.00015832961,0.00017493946,0.00014632006,0.000096375,0.00012719922],"domain_scores_gemma":[0.99948525,0.00004617166,0.000113393304,0.00019514209,0.00010573661,0.000054301076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009527666,0.00013939611,0.00019601014,0.00008296018,0.00034386225,0.000014129339,0.000015490516,0.00007647333,0.0001254145],"category_scores_gemma":[0.00011880086,0.000090041,0.00004779131,0.0002338787,0.00015835119,0.0001067562,0.000022657146,0.00023817211,0.0000033172607],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023240498,0.002485879,0.3230542,0.00095238665,0.0015078896,0.000018760435,0.0023044392,0.000016759135,0.61884403,0.008242797,0.0002748297,0.039973944],"study_design_scores_gemma":[0.005305369,0.006825448,0.76723075,0.00018963125,0.000743273,0.0012920274,0.000434216,0.00012400391,0.20883225,0.0009481528,0.0077704093,0.00030450002],"about_ca_topic_score_codex":0.0010536859,"about_ca_topic_score_gemma":0.000099004545,"teacher_disagreement_score":0.44417652,"about_ca_system_score_codex":0.00006928417,"about_ca_system_score_gemma":0.00005197667,"threshold_uncertainty_score":0.36717653},"labels":[],"label_agreement":null},{"id":"W2138506519","doi":"10.1128/iai.71.9.5306-5313.2003","title":"Comparative Analysis of Plant and Animal Models for Characterization of <i>Burkholderia cepacia</i> Virulence","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; DuPont Pioneer","keywords":"Virulence; Biology; Microbiology; Burkholderia cepacia complex; Burkholderia; Virology; Bacteria; Gene; Genetics","score_opus":0.042956546334635054,"score_gpt":0.3296653263398782,"score_spread":0.28670878000524314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138506519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98904985,0.00008616813,0.010158164,0.000009870551,0.000015892176,0.00023293792,0.00013017874,0.0000067237706,0.00031023493],"genre_scores_gemma":[0.99920845,0.0002877516,0.0003707558,0.000010365838,0.000003403241,0.000011337111,0.000091492984,0.0000022309698,0.0000141832215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99954575,0.000062973566,0.00016254779,0.00008014657,0.000080264996,0.00006830996],"domain_scores_gemma":[0.99954516,0.00009265891,0.00009342555,0.00008564156,0.00014488776,0.000038218608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017556192,0.000055270077,0.0002749956,0.00015823434,0.000052166397,0.0000062909926,0.000012147818,0.00002798936,0.00001696293],"category_scores_gemma":[0.000096959426,0.000048447942,0.000037459275,0.0002830858,0.000105379906,0.0001381662,0.000010645621,0.000055717202,9.6559795e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039584338,0.000110063374,0.012741982,0.00011480295,0.00019939753,8.4663945e-8,0.0004639836,0.000034552588,0.9847202,0.0009652086,0.0000039412007,0.0002499859],"study_design_scores_gemma":[0.0010950378,0.00097502087,0.6065982,0.00007089171,0.00038399416,0.000008630534,0.00017519441,0.027472276,0.36221263,0.00019453702,0.00073470647,0.000078908204],"about_ca_topic_score_codex":0.00015034003,"about_ca_topic_score_gemma":0.00002639971,"teacher_disagreement_score":0.6225075,"about_ca_system_score_codex":0.000010968433,"about_ca_system_score_gemma":0.000022427923,"threshold_uncertainty_score":0.19756497},"labels":[],"label_agreement":null},{"id":"W2138696756","doi":"10.1128/iai.71.4.2280-2282.2003","title":"Flagellum-Mediated Adhesion by<i>Burkholderia pseudomallei</i>Precedes Invasion of<i>Acanthamoeba astronyxis</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Flagellum; Burkholderia pseudomallei; Microbiology; Melioidosis; Biology; Protozoa; Biofilm; Burkholderia; Acanthamoeba; Bacteria; Genetics","score_opus":0.016129463498138593,"score_gpt":0.24580621563894564,"score_spread":0.22967675214080704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138696756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891974,0.0004394848,0.0008649392,0.00009135532,0.0004975888,0.00038909976,0.000014266291,0.0001248865,0.008381034],"genre_scores_gemma":[0.99685776,0.0020809155,0.00028891885,0.00018216333,0.00004279199,0.000030990508,0.000075320335,0.000028236098,0.00041289924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986489,0.0002482151,0.0004084256,0.00025056154,0.0001865514,0.0002573727],"domain_scores_gemma":[0.9989816,0.00012498157,0.00016859952,0.00036153974,0.0001732614,0.00019004497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005141657,0.00022800281,0.00039270605,0.00021384028,0.00028373848,0.000029483926,0.000042182848,0.00022278776,0.0005681771],"category_scores_gemma":[0.00041956396,0.000206251,0.0001329583,0.00045550233,0.00016413859,0.0002068121,0.00004118169,0.0003742919,0.000029795397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012038202,0.0006445011,0.085198306,0.00014215999,0.000085858876,0.0000018858987,0.00014161858,0.0000033250576,0.90550935,0.00014130854,0.004203622,0.003807682],"study_design_scores_gemma":[0.0039082626,0.0013385786,0.12860686,0.00027019915,0.00019508791,0.000245699,0.0002918223,0.000053699063,0.7649794,0.000073638876,0.09968772,0.000349013],"about_ca_topic_score_codex":0.0011334472,"about_ca_topic_score_gemma":0.000045785535,"teacher_disagreement_score":0.14052992,"about_ca_system_score_codex":0.000055469613,"about_ca_system_score_gemma":0.00008599953,"threshold_uncertainty_score":0.8410672},"labels":[],"label_agreement":null},{"id":"W2138756360","doi":"10.1128/iai.00545-09","title":"<i>Salmonella enterica</i>Serovar Typhimurium Exploits Toll-Like Receptor Signaling during the Host-Pathogen Interaction","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research; McMaster University","keywords":"Salmonella enterica; Salmonella; Biology; Innate immune system; Microbiology; Immune system; Salmonella infection; Type three secretion system; Intracellular parasite; Toll-like receptor; Pathogen; Spleen; Lipopolysaccharide; Virulence; Secretion; Immunity; Immunology; Bacteria; Gene; Genetics","score_opus":0.020906149844063353,"score_gpt":0.23631499217098695,"score_spread":0.2154088423269236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138756360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975393,0.00016366896,0.000010313857,0.00087290176,0.0005066521,0.00014676747,0.0000076442375,0.00010924144,0.0006435339],"genre_scores_gemma":[0.99806184,0.0005202326,0.000013782774,0.0008786407,0.0002914392,0.000010889874,0.00003369143,0.000001222106,0.00018824506],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99887913,0.00034837588,0.00024326735,0.0002148061,0.00008205885,0.00023237446],"domain_scores_gemma":[0.9994762,0.00018252763,0.00012527047,0.00008791312,0.00005795107,0.00007015714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034992385,0.00015350652,0.00017272776,0.000017069744,0.0005416304,0.00007142633,0.000120370205,0.00010494372,0.00026049206],"category_scores_gemma":[0.00006777577,0.00006090552,0.00009342597,0.00020642714,0.00004946213,0.00019714437,0.00005797484,0.0002758357,0.00005380037],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000076915836,0.00007098427,0.021933246,0.0000031606621,0.000011807001,9.51623e-7,0.00016483705,0.000004353818,0.96423453,0.000013774983,0.0001426357,0.013342782],"study_design_scores_gemma":[0.00017232672,0.00036911573,0.9458446,0.000024041194,0.000014599511,0.000079708945,0.00048221898,0.000028989425,0.022900602,0.00013072678,0.029757315,0.0001957377],"about_ca_topic_score_codex":0.00045578147,"about_ca_topic_score_gemma":0.00007751494,"teacher_disagreement_score":0.94133395,"about_ca_system_score_codex":0.00003364323,"about_ca_system_score_gemma":0.0000030266997,"threshold_uncertainty_score":0.41658375},"labels":[],"label_agreement":null},{"id":"W2138879055","doi":"10.1128/iai.72.1.451-460.2004","title":"Chlamydia-Infected Cells Continue To Undergo Mitosis and Resist Induction of Apoptosis","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; U.S. Department of Health and Human Services","keywords":"Biology; Chlamydia; Apoptosis; Mitosis; Serotype; Chlamydiales; Microbiology; Chlamydiaceae; Programmed cell death; Virology; Host (biology); DNA; Immunology; Cell biology; Genetics","score_opus":0.020802500513905666,"score_gpt":0.27584717651639296,"score_spread":0.2550446760024873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138879055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99368316,0.00033347573,0.0003279592,0.000101129066,0.0006738914,0.0003678999,0.000008234529,0.00006208052,0.0044421544],"genre_scores_gemma":[0.9984013,0.00044339304,0.000060135044,0.00002819854,0.000016882415,0.00003505468,0.000010256219,0.000013521791,0.0009912454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848735,0.0006923733,0.00026920062,0.0002821648,0.000041347037,0.00022758867],"domain_scores_gemma":[0.99906385,0.00021207304,0.00010170965,0.00032775855,0.00025170142,0.00004290499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005963465,0.00015357565,0.00024991453,0.0003679942,0.0003912848,0.000036430392,0.000048792444,0.00022196968,0.00026815207],"category_scores_gemma":[0.000729231,0.00015082944,0.000052839936,0.0004939555,0.0002941245,0.00017955714,0.00006133316,0.000447803,0.0000776956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000072254436,0.00025043677,0.046393614,0.00003270963,0.00012807784,8.9846566e-8,0.00026787427,0.000004544108,0.9456931,0.0010395324,0.0006267101,0.0054910663],"study_design_scores_gemma":[0.00054008915,0.0002544841,0.28564402,0.000019372928,0.000028656334,0.000035165354,0.00014006108,2.4132677e-7,0.68944037,0.00014251313,0.023633787,0.000121244855],"about_ca_topic_score_codex":0.0028447441,"about_ca_topic_score_gemma":0.00013610433,"teacher_disagreement_score":0.2562527,"about_ca_system_score_codex":0.00005372203,"about_ca_system_score_gemma":0.000046152625,"threshold_uncertainty_score":0.6150646},"labels":[],"label_agreement":null},{"id":"W2139069865","doi":"10.1128/iai.73.1.583-591.2005","title":"Interaction and Cellular Localization of the Human Host Defense Peptide LL-37 with Lung Epithelial Cells","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children’s Health Research Institute; BC Research (Canada); Inimex Pharmaceuticals (Canada); University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Genome Prairie; Genome British Columbia","keywords":"Biology; Innate immune system; Cell biology; A549 cell; Endocytosis; Effector; Receptor; Immune system; Actin; Cell culture; Immunology; Biochemistry; Genetics","score_opus":0.007717358341017278,"score_gpt":0.21566599399676747,"score_spread":0.2079486356557502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139069865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665856,0.00013398242,0.0021860208,0.00003901939,0.0002493744,0.00013839347,0.000010663692,0.000024095072,0.0005599016],"genre_scores_gemma":[0.9994761,0.00012047773,0.000010332344,0.00006475322,0.000015384367,0.0000025260877,0.000017530945,0.00000825335,0.00028465252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995175,0.00011576552,0.00014012166,0.00010489328,0.000018476625,0.00010322105],"domain_scores_gemma":[0.9996603,0.000026284128,0.00012434613,0.00012835147,0.000050993804,0.000009713484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000097493656,0.00010380133,0.00012748771,0.000042011307,0.00046167878,0.00002035007,0.000036627338,0.000095429394,0.00004821679],"category_scores_gemma":[0.000010580518,0.0000727634,0.000037010173,0.000076451724,0.0003312538,0.00015280122,0.000054872646,0.00022756694,0.0000053683207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059717986,0.00008896363,0.008508473,0.000033937158,0.000051311443,2.9300713e-7,0.00068385736,0.00016849142,0.9894728,0.00058669434,0.00007109403,0.00027434237],"study_design_scores_gemma":[0.00092184765,0.00018204309,0.024385935,0.00009000091,0.000053860873,0.0000531622,0.00042854942,0.0000072462876,0.9719305,0.000119246666,0.0017182824,0.00010934013],"about_ca_topic_score_codex":0.003574933,"about_ca_topic_score_gemma":0.00031662494,"teacher_disagreement_score":0.017542338,"about_ca_system_score_codex":0.000026092379,"about_ca_system_score_gemma":0.000017693685,"threshold_uncertainty_score":0.5404253},"labels":[],"label_agreement":null},{"id":"W2139295345","doi":"10.1128/iai.01152-10","title":"Branching Network of Proteinaceous Filaments within the Parasitophorous Vacuole of <i>Encephalitozoon cuniculi</i> and <i>Encephalitozoon hellem</i>","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Cancer Institute; Canadian Institutes of Health Research; Michael Smith Health Research BC; National Center for Research Resources; Canadian Institute for Advanced Research","keywords":"Encephalitozoon cuniculi; Biology; Microsporidia; Organelle; Vacuole; Cell biology; Microbiology; Intracellular parasite; Spore; Intracellular; Cytoplasm","score_opus":0.019994097380821217,"score_gpt":0.23521674526986483,"score_spread":0.2152226478890436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139295345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916223,0.0019602985,0.0007626932,0.000015742364,0.00072401017,0.00035680318,0.000014058616,0.00003132311,0.0045127594],"genre_scores_gemma":[0.9989879,0.00062559766,0.0001416362,0.00008119673,0.000026138456,0.000026650436,0.000010502289,0.000008808774,0.0000915794],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99876535,0.00040304172,0.00039885237,0.00016319999,0.00004209192,0.00022747536],"domain_scores_gemma":[0.99904543,0.00022591506,0.0002994407,0.0002891038,0.00011614442,0.00002396368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006240603,0.00016137036,0.00027810314,0.000044794047,0.0004684403,0.00001096466,0.00009803738,0.00016521814,0.0000747564],"category_scores_gemma":[0.00015430519,0.00012084932,0.000060028968,0.00019354672,0.0004966466,0.000116323004,0.000108065055,0.00032296224,0.00000823278],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000752546,0.0016453823,0.7405926,0.00033530293,0.000745786,0.000007241142,0.013203134,0.00021858237,0.19953245,0.020173289,0.0009511707,0.02184249],"study_design_scores_gemma":[0.0023052357,0.0016094795,0.6923252,0.00036518965,0.0002632625,0.0005066749,0.0011741379,0.000050568207,0.29129022,0.005510271,0.0041441564,0.00045562183],"about_ca_topic_score_codex":0.0055984333,"about_ca_topic_score_gemma":0.00015783517,"teacher_disagreement_score":0.09175776,"about_ca_system_score_codex":0.000014722259,"about_ca_system_score_gemma":0.00003994654,"threshold_uncertainty_score":0.84631944},"labels":[],"label_agreement":null},{"id":"W2139347509","doi":"10.1128/iai.73.9.5995-6004.2005","title":"<i>Bordetella pertussis risA</i> , but Not <i>risS</i> , Is Required for Maximal Expression of Bvg-Repressed Genes","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Wellcome Trust","keywords":"Bordetella pertussis; Biology; Gene; Bordetella; Mutant; Virulence; Mutation; Genetics; Microbiology; Bacteria","score_opus":0.023550982970532427,"score_gpt":0.2682115869013008,"score_spread":0.24466060393076838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139347509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960882,0.0010166508,0.00062887697,0.00045081633,0.00074661436,0.00028419896,0.0001056724,0.00008859537,0.00059038843],"genre_scores_gemma":[0.9968836,0.0010556378,0.00018526764,0.0003034617,0.0001147367,0.000050239523,0.00006553326,0.000017659691,0.001323877],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989723,0.00015955845,0.00037491295,0.00022943226,0.000018565688,0.0002452467],"domain_scores_gemma":[0.99915296,0.00012667863,0.0001895605,0.00031510176,0.00017919243,0.000036532285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002663,0.00018592043,0.0003081974,0.00011650626,0.0004581218,0.000026359341,0.00008475027,0.0002851169,0.0006233009],"category_scores_gemma":[0.00013141322,0.000160267,0.00014520549,0.00011087804,0.0001235173,0.00023311914,0.000087995984,0.00017782513,0.000035862755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041322404,0.00022392008,0.0031073862,0.000037577072,0.00006028947,3.755367e-8,0.00023420517,0.0000052640617,0.9653859,0.00003628375,0.005082733,0.025413161],"study_design_scores_gemma":[0.0012654008,0.00020913973,0.01017084,0.000024834118,0.000043080094,0.000024214507,0.0000488752,0.000011981115,0.72641957,0.000028047552,0.2616161,0.00013793462],"about_ca_topic_score_codex":0.0014113791,"about_ca_topic_score_gemma":0.000060724567,"teacher_disagreement_score":0.25653338,"about_ca_system_score_codex":0.000022669978,"about_ca_system_score_gemma":0.000037495618,"threshold_uncertainty_score":0.6824708},"labels":[],"label_agreement":null},{"id":"W2139417329","doi":"10.1128/iai.00067-13","title":"Mapping and Regulation of Genes within Salmonella Pathogenicity Island 12 That Contribute to <i>In Vivo</i> Fitness of Salmonella enterica Serovar Typhimurium","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; McMaster University","keywords":"Biology; Salmonella enterica; Pathogenicity island; Virulence; Salmonella; Chromatin immunoprecipitation; Gene; Bacteriophage; Transcriptional regulation; Genetics; Microbiology; Reporter gene; Transcription (linguistics); Promoter; Transcription factor; Bacteria; Escherichia coli; Gene expression","score_opus":0.02288248179106144,"score_gpt":0.22141928315890344,"score_spread":0.198536801367842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139417329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989187,0.00019819457,0.00007233341,0.00015914584,0.000113975155,0.00028082659,0.000030077274,0.000017194821,0.00020953779],"genre_scores_gemma":[0.9993827,0.00033259505,0.000045292698,0.00011362262,0.000032706103,0.000013187552,0.00001710713,0.0000011942288,0.000061610466],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989394,0.00028636082,0.00034556357,0.00018730838,0.00007646927,0.00016491058],"domain_scores_gemma":[0.9993461,0.00022035962,0.0002028083,0.00007393391,0.00008908149,0.00006776049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000462179,0.00012685281,0.0003162401,0.00003791597,0.000087874905,0.000017957158,0.00006750061,0.00012154244,0.00011631734],"category_scores_gemma":[0.00006753043,0.00006377286,0.0000471574,0.0002151203,0.000088653724,0.00011645889,0.00009025128,0.000096246855,0.0000025402965],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000321039,0.000038205868,0.46291474,0.00001580925,0.0000080679465,1.4798081e-7,0.00015803773,0.000012025623,0.5327551,0.0000138692485,0.00004446275,0.0040074866],"study_design_scores_gemma":[0.000218666,0.00018943341,0.9573371,0.000040224742,0.0000065822346,0.000013244259,0.00020750515,0.00019529642,0.04062969,0.00038326182,0.0006667455,0.00011229268],"about_ca_topic_score_codex":0.007968485,"about_ca_topic_score_gemma":0.0015200812,"teacher_disagreement_score":0.49442232,"about_ca_system_score_codex":0.0000114731,"about_ca_system_score_gemma":0.0000039375345,"threshold_uncertainty_score":0.99863756},"labels":[],"label_agreement":null},{"id":"W2139448591","doi":"10.1128/iai.69.9.5786-5793.2001","title":"Towards Development of an Edible Vaccine against Bovine Pneumonic Pasteurellosis Using Transgenic White Clover Expressing a<i>Mannheimia haemolytica</i>A1 Leukotoxin 50 Fusion Protein","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Transgenic Plants and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Pasteurellosis; Microbiology; Immunogenicity; Fusion protein; Virology; Pasteurella multocida; Agrobacterium tumefaciens; Transformation (genetics); Genetically modified crops; Brucella; Transgene; Antigen; Gene; Bacteria; Recombinant DNA; Immunology; Biochemistry; Brucellosis","score_opus":0.022157720160854658,"score_gpt":0.26669939501034284,"score_spread":0.2445416748494882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139448591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98578763,0.00019864937,0.013165011,0.000042200103,0.000049951035,0.0002949847,0.000013575351,0.000023457967,0.00042455836],"genre_scores_gemma":[0.99677044,0.00035919965,0.00247399,0.000058545582,0.000060559145,0.000022889533,0.00013644714,0.000019168938,0.00009876704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906194,0.000077359444,0.00031720387,0.00024229298,0.000104894156,0.00019631398],"domain_scores_gemma":[0.99945605,0.0000038701264,0.000104937135,0.00027973388,0.00006675089,0.000088681365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020321451,0.00016962159,0.0001695634,0.0000667709,0.00027862765,0.000033439745,0.000095521464,0.00014183582,0.000029279585],"category_scores_gemma":[0.0000090680505,0.00016092326,0.00006240846,0.00014202722,0.00003875372,0.000022678989,0.00005395448,0.00014617253,0.0000015412369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011645017,0.00020617197,0.0030000221,0.000030072772,0.000036490575,4.2816393e-7,0.00013362642,0.00010088762,0.980479,0.00000400265,0.000013443961,0.015879404],"study_design_scores_gemma":[0.0009863472,0.00021914698,0.048685335,0.00008379344,0.00003887233,0.000032811713,0.0000647246,0.00065960427,0.93123937,0.000014421501,0.017708432,0.00026716208],"about_ca_topic_score_codex":0.00016777618,"about_ca_topic_score_gemma":0.00023715821,"teacher_disagreement_score":0.04923965,"about_ca_system_score_codex":0.00002169123,"about_ca_system_score_gemma":0.00010391307,"threshold_uncertainty_score":0.656226},"labels":[],"label_agreement":null},{"id":"W2139549013","doi":"10.1128/iai.68.3.1116-1124.2000","title":"Distribution of Core Oligosaccharide Types in Lipopolysaccharides from <i>Escherichia coli</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":197,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Guelph","funders":"Medical Research Council; Health Canada","keywords":"Biology; Escherichia coli; Phylogenetic tree; Virulence; Microbiology; Enterobacteriaceae; VTEC; Phylogenetics; STX2; Genetics; Gene; Shiga toxin","score_opus":0.015491661439497722,"score_gpt":0.2708623812338913,"score_spread":0.2553707197943936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139549013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981951,0.0007248776,0.000054463486,0.000037262078,0.000044936216,0.000100711164,0.00004943773,0.00000977583,0.00078340335],"genre_scores_gemma":[0.995719,0.003861495,0.000039811635,0.000063877975,0.000040597282,0.000015932248,0.00012175249,0.0000060266243,0.00013147441],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99944067,0.00007762715,0.00015246573,0.00013476786,0.00006844719,0.0001260168],"domain_scores_gemma":[0.99968535,0.000022631848,0.000038660244,0.00016277177,0.00005549277,0.000035108696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014849362,0.000088484114,0.00012382817,0.000021678929,0.000079488505,0.000011778565,0.00005939533,0.00008494598,0.000090214235],"category_scores_gemma":[0.00012073422,0.00008597869,0.000034142322,0.00014273204,0.00011301547,0.000007721857,0.00006174179,0.00013585418,0.000004872112],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016037241,0.00012656857,0.14776589,0.000016256294,0.00004659703,5.307752e-7,0.000091121554,0.000026165888,0.8424339,0.000042799547,0.0002881146,0.009001648],"study_design_scores_gemma":[0.0004954016,0.00020372066,0.8334609,0.000024757514,0.000011397466,0.0000011385199,0.000047104477,0.0001321347,0.15214105,0.0002141044,0.013140094,0.0001281997],"about_ca_topic_score_codex":0.00656183,"about_ca_topic_score_gemma":0.0009803899,"teacher_disagreement_score":0.6902929,"about_ca_system_score_codex":0.000013650846,"about_ca_system_score_gemma":0.0000330304,"threshold_uncertainty_score":0.9919568},"labels":[],"label_agreement":null},{"id":"W2139833332","doi":"10.1128/iai.00321-08","title":"The Sialylated Lipooligosaccharide Outer Core in <i>Campylobacter jejuni</i> Is an Important Determinant for Epithelial Cell Invasion","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Rijksinstituut voor Volksgezondheid en Milieu","keywords":"Campylobacter jejuni; Biology; Microbiology; Complementation; Virulence; Sialic acid; Virulence factor; Mutant; Serotype; Sialyltransferase; Bacteria; Gene; Genetics","score_opus":0.055192328815273015,"score_gpt":0.2594303278668655,"score_spread":0.20423799905159246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139833332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885285,0.00010967109,0.0000047545163,0.00029062267,0.0002952796,0.0002840015,0.00003378512,0.00003776952,0.000091288435],"genre_scores_gemma":[0.9967945,0.0020033764,0.0000137412835,0.0008385137,0.0001375549,0.00003133222,0.000057527446,0.0000016320064,0.00012181051],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998892,0.00014565917,0.00036739174,0.0002317984,0.00006737791,0.00029576846],"domain_scores_gemma":[0.99924207,0.0003547994,0.00014539961,0.00010768418,0.00006425051,0.00008577596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005621209,0.00015347668,0.00020222178,0.000017151158,0.00067777093,0.00003483383,0.00013700493,0.00016442887,0.000056271],"category_scores_gemma":[0.0000809461,0.00005627062,0.00008886732,0.00015795027,0.00011905341,0.00015427682,0.00006340971,0.00020472445,0.000008470959],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026651958,0.00025135386,0.5780893,0.000008170388,0.000009698159,0.0000072644093,0.00054025184,9.058451e-7,0.3916477,0.000036950896,0.00038443357,0.028757486],"study_design_scores_gemma":[0.00042633,0.0007170649,0.955066,0.000011891666,0.0000102243075,0.00008700146,0.000113926435,0.00021942523,0.016910965,0.0009274387,0.025307061,0.00020262889],"about_ca_topic_score_codex":0.0029258588,"about_ca_topic_score_gemma":0.0032821402,"teacher_disagreement_score":0.37697676,"about_ca_system_score_codex":0.000021997195,"about_ca_system_score_gemma":0.000011714228,"threshold_uncertainty_score":0.52129346},"labels":[],"label_agreement":null},{"id":"W2139848396","doi":"10.1128/iai.00994-08","title":"Dendritic Cell and NK Cell Reciprocal Cross Talk Promotes Gamma Interferon-Dependent Immunity to Blood-Stage<i>Plasmodium chabaudi</i>AS Infection in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Plasmodium chabaudi; Biology; Interleukin 12; Priming (agriculture); Immunology; Dendritic cell; Cell biology; Interferon gamma; CD11c; Interleukin 21; T cell; Cytokine; Immune system; Parasitemia; In vitro; Plasmodium falciparum; Cytotoxic T cell; Phenotype","score_opus":0.014225421773316073,"score_gpt":0.2464351348079218,"score_spread":0.23220971303460575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139848396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913565,0.0008465818,0.00020676176,0.00006233876,0.0026492958,0.00057994574,0.0000058373116,0.0001617387,0.004130998],"genre_scores_gemma":[0.98159957,0.0026113428,0.000017407197,0.00025675693,0.00003973877,0.00007726996,0.00008858605,0.00003474031,0.015274563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99772406,0.0006455038,0.00059654284,0.00048048605,0.000073156254,0.00048027514],"domain_scores_gemma":[0.9989994,0.00017067093,0.00020185224,0.00034752852,0.00019685153,0.00008365894],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00052221445,0.00038641912,0.00039812122,0.00040298456,0.00091019575,0.00009245773,0.00012340279,0.00044859992,0.00067529787],"category_scores_gemma":[0.00018704175,0.00040404586,0.00010355893,0.0003352654,0.0002938233,0.00058576174,0.0002668552,0.0013363004,0.0004110194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090642134,0.0013204333,0.09686795,0.00017083185,0.00006857756,0.000018307113,0.0023685931,0.000035550387,0.89679706,0.0000200953,0.00033559394,0.001090603],"study_design_scores_gemma":[0.0029763328,0.0018484826,0.24010624,0.000087472166,0.00004319141,0.0010858693,0.0002820493,0.00002762199,0.73897284,0.000017162514,0.014107742,0.00044499873],"about_ca_topic_score_codex":0.013496615,"about_ca_topic_score_gemma":0.0010929023,"teacher_disagreement_score":0.1578242,"about_ca_system_score_codex":0.00014502225,"about_ca_system_score_gemma":0.0000701694,"threshold_uncertainty_score":0.99984115},"labels":[],"label_agreement":null},{"id":"W2140042864","doi":"10.1128/iai.68.5.2493-2502.2000","title":"RpmA Is Required for Nonopsonic Phagocytosis of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Phagocytosis; Biology; Microbiology; Pseudomonas aeruginosa; Mutant; Transposable element; Gene; Molecular biology; Bacteria; Genetics","score_opus":0.01318286526799563,"score_gpt":0.2501651991176902,"score_spread":0.23698233384969455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140042864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978316,0.00018950761,0.0000686656,0.000084328254,0.00012222261,0.00012950967,0.00003016555,0.00001008181,0.001533953],"genre_scores_gemma":[0.99807286,0.00080496294,0.00022597826,0.0002681472,0.00009258693,0.000005972497,0.00005687556,0.000009450837,0.0004631878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952126,0.000036883306,0.00015087929,0.00013554719,0.000032657983,0.00012279507],"domain_scores_gemma":[0.9996671,0.000009570213,0.00005296926,0.0001799077,0.000055009066,0.00003543368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011434455,0.00009060431,0.00011636919,0.000021298669,0.00012134884,0.00001600018,0.000035923993,0.000112741436,0.00009518034],"category_scores_gemma":[0.000019197667,0.00008845707,0.0000779816,0.00005211003,0.00006625623,0.000006626744,0.000023634217,0.0000462015,0.0000037651434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015937694,0.000046806606,0.0008023891,0.000017278766,0.00002963723,5.9096664e-8,0.000042891323,0.0000010459056,0.9601107,0.000014165397,0.00055166864,0.03822394],"study_design_scores_gemma":[0.0006492352,0.00034555138,0.0067332233,0.000011461723,0.000019312612,0.000012202223,0.00001125204,0.000020040367,0.8922323,0.000018600309,0.0998407,0.00010612026],"about_ca_topic_score_codex":0.0003484326,"about_ca_topic_score_gemma":0.000026528056,"teacher_disagreement_score":0.09928904,"about_ca_system_score_codex":0.0000053082376,"about_ca_system_score_gemma":0.000021266702,"threshold_uncertainty_score":0.36071745},"labels":[],"label_agreement":null},{"id":"W2140145998","doi":"10.1128/iai.71.6.3310-3319.2003","title":"Secretin of the Enteropathogenic<i>Escherichia coli</i>Type III Secretion System Requires Components of the Type III Apparatus for Assembly and Localization","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Medical Research Council; Canadian Institutes of Health Research; Medical Research Council Canada; Michael Smith Health Research BC; Howard Hughes Medical Institute","keywords":"Biology; Mutant; Escherichia coli; Periplasmic space; Secretion; Cell fractionation; Virulence; Bacterial outer membrane; Wild type; Enteropathogenic Escherichia coli; Effector; Cytoplasm; Biochemistry; Microbiology; Membrane; Gene","score_opus":0.018069388102247074,"score_gpt":0.26646396803486855,"score_spread":0.24839457993262148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140145998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99655515,0.0006145315,0.0017238461,0.000014090447,0.00025433218,0.0004166859,0.0000076101132,0.0000056314307,0.00040811396],"genre_scores_gemma":[0.9993147,0.00046936545,0.000031114516,0.000035283996,0.000017744815,0.000016430728,0.000017694769,0.000007948004,0.000089716996],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991116,0.00038637483,0.00018683425,0.00011739493,0.00009422629,0.00010360637],"domain_scores_gemma":[0.9993042,0.000026597187,0.0001554935,0.00022068781,0.00026904853,0.00002398085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003948618,0.00009030913,0.00013061451,0.000017258735,0.0002501904,0.000012247934,0.00007106795,0.00008652148,0.000001426446],"category_scores_gemma":[0.00026709077,0.00006134191,0.000048872465,0.00017112616,0.00015911365,0.0000062539725,0.00011613549,0.00008547652,1.2276828e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017379949,0.000043661188,0.03601676,0.00013763628,0.000051824387,2.2022029e-8,0.00010323937,0.000026854992,0.9629796,0.00033458907,0.0000767177,0.00005526321],"study_design_scores_gemma":[0.0027762468,0.0012501201,0.38975328,0.00025721084,0.00012765623,0.000018292278,0.0007260786,0.0038318308,0.581029,0.00007368367,0.019879838,0.0002767445],"about_ca_topic_score_codex":0.00023890103,"about_ca_topic_score_gemma":0.00008172978,"teacher_disagreement_score":0.38195062,"about_ca_system_score_codex":0.00001608807,"about_ca_system_score_gemma":0.00004774876,"threshold_uncertainty_score":0.25014505},"labels":[],"label_agreement":null},{"id":"W2140150379","doi":"10.1128/iai.69.10.6323-6335.2001","title":"Locus of Enterocyte Effacement from <i>Citrobacter rodentium</i> : Sequence Analysis and Evidence for Horizontal Transfer among Attaching and Effacing Pathogens","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; Enteropathogenic Escherichia coli; Intimin; Pathogenicity island; Plasmid; Citrobacter; Microbiology; Shigella; Genetics; Mobile genetic elements; Enterobacteriaceae; Locus (genetics); Escherichia coli; Complete sequence; Sequence analysis; Gene; Pathogen; Genome","score_opus":0.03718589083965214,"score_gpt":0.3206777503269063,"score_spread":0.2834918594872542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140150379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9793318,0.001386115,0.018990241,0.000021595744,0.000033318174,0.00019033595,0.00002415519,0.0000059921,0.00001646122],"genre_scores_gemma":[0.99482286,0.004912714,0.00014336617,0.00002233271,0.000025538919,0.00002521769,0.000024756258,0.0000058175483,0.000017393018],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993153,0.00011275471,0.0001519127,0.00021251486,0.00007273859,0.00013473083],"domain_scores_gemma":[0.9996437,0.000058711907,0.000037905887,0.00013519647,0.00007262904,0.0000518994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026783894,0.00010792271,0.00016710823,0.000055208933,0.00017691594,0.000037347007,0.000037691243,0.000059760452,0.0000038447815],"category_scores_gemma":[0.00009705944,0.000099887315,0.00006653734,0.00010194651,0.0001241397,0.000021073502,0.00010005512,0.00009170219,8.242214e-8],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009276042,0.000017553994,0.43693453,0.000027492735,0.00021729605,3.5552873e-7,0.00012135508,0.00000826791,0.56079155,9.0020256e-7,0.0000013187541,0.0017866167],"study_design_scores_gemma":[0.0006671508,0.00040737618,0.888643,0.000061603656,0.0002595246,0.0000037210025,0.00010904133,0.00042871348,0.10900681,0.000009018804,0.00026292313,0.00014111043],"about_ca_topic_score_codex":0.0024555067,"about_ca_topic_score_gemma":0.0023350369,"teacher_disagreement_score":0.45178473,"about_ca_system_score_codex":0.000013220263,"about_ca_system_score_gemma":0.000010372825,"threshold_uncertainty_score":0.40732864},"labels":[],"label_agreement":null},{"id":"W2140585544","doi":"10.1128/iai.71.4.2292-2295.2003","title":"The Fibronectin-Binding Proteins of <i>Staphylococcus aureus</i> May Promote Mammary Gland Colonization in a Lactating Mouse Model of Mastitis","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Staphylococcus aureus; Mastitis; Biology; Mammary gland; Microbiology; Colonization; Pathogen; Fibronectin; In vitro; In vivo; Staphylococcal infections; Staphylococcus; Bacteria; Cell biology; Biochemistry; Genetics; Cancer","score_opus":0.023439842515307483,"score_gpt":0.23390358930867314,"score_spread":0.21046374679336566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140585544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998225,0.00005670128,0.00032687595,0.00008712441,0.000041515534,0.00026877128,0.000021873404,0.000016676693,0.0009554921],"genre_scores_gemma":[0.99931896,0.0002439211,0.0002035697,0.000013908644,0.000007967211,0.000016085407,0.000011305552,7.329182e-7,0.00018352855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992276,0.0002401153,0.00023590037,0.000093959636,0.00008693039,0.000115536604],"domain_scores_gemma":[0.99956405,0.00014538213,0.00014830363,0.00005565187,0.000063312815,0.000023280903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056140666,0.00007209846,0.000113638314,0.000016623222,0.0002457239,0.000026359017,0.00006858664,0.00006553956,0.000016049435],"category_scores_gemma":[0.0003042528,0.00003262347,0.000030253552,0.00023344552,0.00006870849,0.00013138773,0.00004177292,0.00013377548,4.0647586e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046363846,0.00016196027,0.04458358,0.00007793597,0.000012158464,3.1601414e-7,0.00060306117,0.000393572,0.9326032,0.0043546692,0.000038712333,0.017124498],"study_design_scores_gemma":[0.0016992276,0.0015104408,0.18660341,0.00036661077,0.000027977345,0.000013999856,0.0013032879,0.009747723,0.78339696,0.0067818235,0.0079333745,0.00061514735],"about_ca_topic_score_codex":0.0013953944,"about_ca_topic_score_gemma":0.0030035686,"teacher_disagreement_score":0.1492062,"about_ca_system_score_codex":0.00001589088,"about_ca_system_score_gemma":0.000014952851,"threshold_uncertainty_score":0.21094282},"labels":[],"label_agreement":null},{"id":"W2140591168","doi":"10.1128/iai.00584-06","title":"Swapping of Periplasmic Domains between <i>Brucella suis</i> VirB8 and a pSB102 VirB8 Homologue Allows Heterologous Complementation","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Heterologous; Brucella suis; Periplasmic space; Complementation; Virology; Brucella abortus; Microbiology; Brucella melitensis; Brucella; Genetics; Gene; Brucellosis; Mutant; Escherichia coli","score_opus":0.05603304736895854,"score_gpt":0.33050118489269226,"score_spread":0.2744681375237337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140591168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967358,0.00028435135,0.00078167656,0.0002177495,0.00018535832,0.00042705133,0.0000743995,0.0001062388,0.0011873536],"genre_scores_gemma":[0.9984539,0.0003442532,0.0005668886,0.00021462863,0.000065168366,0.00006453904,0.00023317315,0.000022638575,0.000034777382],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997935,0.0007523101,0.0005901855,0.00031811598,0.000100440324,0.00030394917],"domain_scores_gemma":[0.99866945,0.00060033065,0.00030637128,0.00029355075,0.000059603288,0.00007070241],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062548945,0.00026035792,0.00047496473,0.00016972331,0.00036759753,0.00003155374,0.00007964726,0.00019567291,0.000103156104],"category_scores_gemma":[0.00006433385,0.00025892942,0.000098368626,0.00013241313,0.00030548935,0.00014544564,0.00014295905,0.00028049646,0.000024839028],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014367758,0.0003327487,0.9547756,0.000086288914,0.00017011675,0.00001632642,0.00034768152,0.000038521048,0.04114394,0.0002661612,0.0008162346,0.0018627549],"study_design_scores_gemma":[0.0016368253,0.0013089001,0.9905459,0.00003544122,0.00011188406,0.00017015502,0.00013701733,0.00012051672,0.0017480297,0.0013776897,0.002584266,0.00022336855],"about_ca_topic_score_codex":0.02084985,"about_ca_topic_score_gemma":0.0011294285,"teacher_disagreement_score":0.03939591,"about_ca_system_score_codex":0.00010963615,"about_ca_system_score_gemma":0.00001627479,"threshold_uncertainty_score":0.9999863},"labels":[],"label_agreement":null},{"id":"W2140709415","doi":"10.1128/iai.00350-08","title":"Comparison of the Susceptibilities of C57BL/6 and A/J Mouse Strains to<i>Streptococcus suis</i>Serotype 2 Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; McGill University Health Centre; Université de Montréal","funders":"McGill University Health Centre; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Streptococcus suis; Biology; Serotype; Immune system; Immunology; Pathogen; Septic shock; Microbiology; Tumor necrosis factor alpha; Meningitis; Proinflammatory cytokine; Virology; Sepsis; Inflammation; Virulence; Medicine; Gene; Genetics","score_opus":0.05876636815403708,"score_gpt":0.3462345704579758,"score_spread":0.2874682023039387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140709415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975538,0.00005865625,0.000056355715,0.000047748857,0.0001323359,0.0006116435,0.000012358993,0.000038122056,0.0014889328],"genre_scores_gemma":[0.9993541,0.00015269821,0.000031289557,0.000027294464,0.000021937338,0.000027568647,0.0000072371745,0.000008723735,0.0003691178],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992669,0.000087448716,0.00029243427,0.00013142025,0.000109827924,0.000111924324],"domain_scores_gemma":[0.9993043,0.000055252563,0.0001248995,0.00027787953,0.00016239418,0.000075261916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010069499,0.00012341182,0.00028581044,0.00011965477,0.00024771242,0.0000071586387,0.000022872213,0.00008347858,0.000084644],"category_scores_gemma":[0.00013742936,0.00008943488,0.00008641559,0.00027320802,0.0002798233,0.00007913777,0.000058927886,0.00018772048,0.0000028916154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044494835,0.00050786417,0.97781396,0.00007339709,0.000069028305,2.4523717e-7,0.0007666804,0.00001690112,0.018486194,0.00008408256,0.00009691494,0.0020402556],"study_design_scores_gemma":[0.0007975475,0.0009110732,0.92723805,0.000053825923,0.000059800248,0.00003164311,0.00013932821,0.00002966452,0.07011638,0.000031094358,0.00052649813,0.00006508973],"about_ca_topic_score_codex":0.0060073067,"about_ca_topic_score_gemma":0.00063070905,"teacher_disagreement_score":0.05163018,"about_ca_system_score_codex":0.000041192532,"about_ca_system_score_gemma":0.000044037224,"threshold_uncertainty_score":0.9081291},"labels":[],"label_agreement":null},{"id":"W2140767519","doi":"10.1128/iai.69.4.2708-2713.2001","title":"Antigastric Autoantibodies in Ferrets Naturally Infected with <i>Helicobacter mustelae</i>","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hospital for Sick Children; Health Research Board","keywords":"Biology; Autoantibody; Helicobacter; Virology; Microbiology; Helicobacter pylori; Immunology; Antibody; Genetics","score_opus":0.014315314499934265,"score_gpt":0.25698468157373444,"score_spread":0.24266936707380019,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140767519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954668,0.0002221616,0.00005329089,0.00089842634,0.00019517897,0.00030075992,0.0000018516151,0.00018171458,0.0026797687],"genre_scores_gemma":[0.9972579,0.0015104807,0.000074535885,0.00082953623,0.000045315843,0.000016149921,0.000028716682,0.000019005887,0.0002183673],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988666,0.00013894522,0.0002833154,0.0002328379,0.00012603258,0.00035222794],"domain_scores_gemma":[0.999343,0.000053374875,0.00008603909,0.00023253796,0.00018752202,0.00009755693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018130468,0.00023236987,0.00036504754,0.00035141243,0.00016754208,0.000030274543,0.000040413295,0.0001583145,0.00004888419],"category_scores_gemma":[0.00013181267,0.00017892059,0.00004467244,0.0006458547,0.00020164168,0.00024379167,0.00007489725,0.00080356235,0.000021216847],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039514076,0.00021217616,0.99197143,0.000029840798,0.00015253619,0.000097923046,0.00034510525,0.000004038313,0.0023780833,0.000007949207,0.000099311765,0.0043064756],"study_design_scores_gemma":[0.002914003,0.0008241068,0.9899676,0.00015945768,0.000075453245,0.0018157038,0.000075178876,0.000048960872,0.00019229269,0.0000071640484,0.003784398,0.00013567031],"about_ca_topic_score_codex":0.0006578311,"about_ca_topic_score_gemma":0.0007205017,"teacher_disagreement_score":0.004170805,"about_ca_system_score_codex":0.00007443484,"about_ca_system_score_gemma":0.00003859025,"threshold_uncertainty_score":0.72961694},"labels":[],"label_agreement":null},{"id":"W2140806604","doi":"10.1128/iai.68.4.2359-2362.2000","title":"In Vivo-Induced Genes in <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Université Laval","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; Harvard University; Medical Research Council Canada; Monash University; National Institutes of Health","keywords":"Biology; Pyoverdine; Pseudomonas aeruginosa; Virulence; In vivo; Open reading frame; Microbiology; Biogenesis; Gene; Peptide sequence; Bacteria; Genetics","score_opus":0.008282752767349215,"score_gpt":0.23416093973293117,"score_spread":0.22587818696558196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140806604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975943,0.0002228418,0.0000037406346,0.00015679593,0.00012668157,0.000089772315,0.0000029700036,0.000009062783,0.001793826],"genre_scores_gemma":[0.9966023,0.0028059836,0.00003166674,0.0002239812,0.000057740082,0.000010236228,0.000008605394,0.0000067088745,0.00025279622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994653,0.000065517306,0.00013978293,0.00015787888,0.000028106146,0.00014342814],"domain_scores_gemma":[0.99976814,0.0000036062463,0.000020922085,0.000168804,0.000013379339,0.000025135378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011582022,0.00009096494,0.000095578645,0.00006640875,0.000041387357,0.000014236898,0.0000552001,0.00022378386,0.000149813],"category_scores_gemma":[0.000011567066,0.000091340204,0.000023740136,0.0001241769,0.00004431009,0.0000043110376,0.000044696564,0.00013007694,0.0000076195684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004627971,0.00007250602,0.012782265,0.0000038987514,0.0000041959015,0.0000015347288,0.00001898585,0.0000058507508,0.9623362,0.000018434357,0.00006307646,0.024646794],"study_design_scores_gemma":[0.0006763525,0.00023333321,0.082570866,0.0000072250914,0.000002359777,0.000029252964,0.0000121451985,0.000017036957,0.8186751,0.00009672233,0.09753488,0.000144738],"about_ca_topic_score_codex":0.0014448522,"about_ca_topic_score_gemma":0.001516386,"teacher_disagreement_score":0.1436611,"about_ca_system_score_codex":0.000008848341,"about_ca_system_score_gemma":0.000017673949,"threshold_uncertainty_score":0.37247455},"labels":[],"label_agreement":null},{"id":"W2140859860","doi":"10.1128/iai.69.6.4103-4108.2001","title":"Protection against Cutaneous Leishmaniasis Induced by Recombinant Antigens in Murine and Nonhuman Primate Models of the Human Disease","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Bill and Melinda Gates Foundation","keywords":"Biology; Virology; Leishmaniasis; Antigen; Cutaneous leishmaniasis; Recombinant DNA; Immunology; Primate; Nonhuman primate; Leishmania; Disease; Medicine; Genetics; Parasite hosting","score_opus":0.045621906898917375,"score_gpt":0.30574315425986576,"score_spread":0.2601212473609484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140859860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701977,0.00014996472,0.000020272399,0.0005278963,0.00006355756,0.0008054889,0.0000038029666,0.0000366807,0.0013725742],"genre_scores_gemma":[0.99733037,0.0023094309,0.0000057630655,0.000052357733,0.000015027471,0.000043519965,0.0000068070926,0.000014364778,0.00022233429],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898887,0.0001835785,0.0002659705,0.00018277236,0.00018345195,0.00019533123],"domain_scores_gemma":[0.9993856,0.000024506377,0.00010261501,0.0002814531,0.00011503593,0.00009080243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028402128,0.00013562758,0.0002478448,0.00015375315,0.00037590743,0.000025705704,0.000049188326,0.000061333085,0.000012387095],"category_scores_gemma":[0.00014702919,0.00010125012,0.000049604383,0.00027369856,0.00015427535,0.000157828,0.00013920013,0.00038399204,9.750339e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048266177,0.0016193598,0.664758,0.0005530763,0.00013817739,0.000034857232,0.0014540517,0.00002756467,0.30592367,0.00018199232,0.0001850245,0.024641521],"study_design_scores_gemma":[0.0015302429,0.00042221876,0.98689747,0.00025450916,0.00003453939,0.00007887539,0.00012980905,0.0008676509,0.008587491,0.0005727549,0.00048612256,0.00013830778],"about_ca_topic_score_codex":0.003505444,"about_ca_topic_score_gemma":0.00072414475,"teacher_disagreement_score":0.32213944,"about_ca_system_score_codex":0.00009469801,"about_ca_system_score_gemma":0.000032563705,"threshold_uncertainty_score":0.5299206},"labels":[],"label_agreement":null},{"id":"W2141010664","doi":"10.1128/iai.69.8.5207-5211.2001","title":"Evolutionary Relationships among Virulence-Associated Histidine Kinases","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Streptomyces coelicolor; Histidine kinase; Phylogenetic tree; Histidine; Genetics; Eukaryote; Phylogenetics; Subfamily; Kinase; Horizontal gene transfer; Gene; Microbiology; Streptomyces; Genome; Bacteria; Amino acid","score_opus":0.036342423125257026,"score_gpt":0.25025647185848915,"score_spread":0.2139140487332321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141010664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99527276,0.00038400452,0.000013521594,0.00078648777,0.00015535127,0.00013740011,0.0000044800104,0.00010034862,0.0031456274],"genre_scores_gemma":[0.99663913,0.00087723293,0.000033145803,0.000114768685,0.000077251374,9.789073e-7,0.000047117446,0.000006130481,0.0022042522],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994438,0.00011611604,0.0001419733,0.00011646446,0.00007330861,0.00010830317],"domain_scores_gemma":[0.9995649,0.00006978118,0.000059289163,0.00012748092,0.00011901416,0.00005954673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023947968,0.00008242504,0.0001215868,0.00009180345,0.00038505642,0.000014061128,0.000019332285,0.00010001214,0.00033237835],"category_scores_gemma":[0.0009227962,0.000067461224,0.000042438132,0.0002624911,0.000099226825,0.00014270823,0.000024263212,0.0003160428,0.000024994522],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011929055,0.00032995586,0.9478873,0.00002467751,0.00005190254,0.000007815095,0.00007811966,0.000001963308,0.03958071,0.00012599275,0.005294672,0.0064975703],"study_design_scores_gemma":[0.0003239288,0.000105390354,0.981397,0.00006992572,0.00004957009,0.00007853167,0.000023633793,0.000075260505,0.0025285773,0.00011953488,0.015145703,0.00008296037],"about_ca_topic_score_codex":0.0019490701,"about_ca_topic_score_gemma":0.00018851373,"teacher_disagreement_score":0.037052132,"about_ca_system_score_codex":0.00008577298,"about_ca_system_score_gemma":0.00002194283,"threshold_uncertainty_score":0.36393097},"labels":[],"label_agreement":null},{"id":"W2141176301","doi":"10.1128/iai.00985-06","title":"SseL Is a <i>Salmonella</i> -Specific Translocated Effector Integrated into the SsrB-Controlled <i>Salmonella</i> Pathogenicity Island 2 Type III Secretion System","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; McMaster University; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Public Health Agency; Public Health Agency of Canada; McMaster University","keywords":"Pathogenicity island; Virulence; Biology; Type three secretion system; Salmonella; Salmonella enterica; Secretion; Effector; Microbiology; Pathogen; Gene; Genetics; Bacteria; Cell biology","score_opus":0.010549065256093042,"score_gpt":0.20328739492165426,"score_spread":0.19273832966556123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141176301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99445987,0.0018064269,0.00021712063,0.00042129305,0.0005552627,0.00069348555,0.000030055946,0.0002622095,0.001554273],"genre_scores_gemma":[0.99801546,0.0007730076,0.00000787494,0.00033518052,0.0003002333,0.00005737038,0.0002807071,0.0000043904283,0.00022579476],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973222,0.0011178126,0.0005783791,0.00042067684,0.00017346436,0.0003874741],"domain_scores_gemma":[0.9986776,0.0005958902,0.00023551159,0.000178377,0.0002175324,0.000095072915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010835343,0.00034725587,0.0005756025,0.000033824082,0.00082324346,0.00012882732,0.00020192037,0.00032007782,0.00017669561],"category_scores_gemma":[0.000046942292,0.00013154493,0.00023212895,0.0007170903,0.00018479384,0.00012679133,0.000053274485,0.00046686124,0.00007484801],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016391973,0.00026391615,0.042920925,0.00003942575,0.00010867282,0.0000058013616,0.00050098,0.000028467039,0.9355101,0.00025842065,0.003598419,0.015125656],"study_design_scores_gemma":[0.008997945,0.0023935935,0.8154512,0.00021417205,0.00036814413,0.0003472261,0.0018405422,0.0045396867,0.03033775,0.0013815627,0.13251625,0.0016119436],"about_ca_topic_score_codex":0.020959945,"about_ca_topic_score_gemma":0.0031313717,"teacher_disagreement_score":0.90517235,"about_ca_system_score_codex":0.000079803445,"about_ca_system_score_gemma":0.000014656923,"threshold_uncertainty_score":0.9855596},"labels":[],"label_agreement":null},{"id":"W2141216786","doi":"10.1128/iai.00382-12","title":"The Pseudomonas aeruginosa PhoP-PhoQ Two-Component Regulatory System Is Induced upon Interaction with Epithelial Cells and Controls Cytotoxicity and Inflammation","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Pseudomonas aeruginosa; Biology; Virulence; Microbiology; Mutant; Operon; Lipopolysaccharide; Lipid A; Mutation; Phenotype; Wild type; Bacteria; Gene; Immunology; Genetics","score_opus":0.008411511710266405,"score_gpt":0.2353696247769361,"score_spread":0.2269581130666697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141216786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855566,0.00019339837,0.000450364,0.000041088082,0.00026253422,0.00027570946,0.000006947677,0.000018126037,0.00019618252],"genre_scores_gemma":[0.9993647,0.00032745267,0.000036343423,0.00003209909,0.00017702117,0.000009979368,0.000012612467,0.000010776846,0.000029031247],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922246,0.00020481482,0.00018341548,0.00014953666,0.000079514386,0.0001602581],"domain_scores_gemma":[0.99945134,0.0000394375,0.00015989148,0.00021465182,0.00006569234,0.000068962654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040295217,0.00014000274,0.00012766759,0.000029756618,0.00036374564,0.00008550988,0.000036082558,0.00010633723,0.0000024359363],"category_scores_gemma":[0.000024091749,0.000101424375,0.000024120302,0.00003732262,0.00010685939,0.000035211,0.000060512495,0.00014211371,0.000002046712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032839307,0.000022145274,0.023315843,0.00003360158,0.000046851557,1.917972e-7,0.00014761408,0.0000015246762,0.97395414,0.0001059347,0.000016802924,0.002026931],"study_design_scores_gemma":[0.0008055538,0.00015358489,0.25538188,0.00003823863,0.000026850012,0.000071885144,0.0002722734,0.00012255374,0.74080527,0.0000058400183,0.0021856653,0.00013039139],"about_ca_topic_score_codex":0.00028304404,"about_ca_topic_score_gemma":0.00009895639,"teacher_disagreement_score":0.2331489,"about_ca_system_score_codex":0.000034811772,"about_ca_system_score_gemma":0.000016484095,"threshold_uncertainty_score":0.4135966},"labels":[],"label_agreement":null},{"id":"W2141376616","doi":"10.1128/iai.69.10.6030-6037.2001","title":"Surface-Expressed Mig Protein Protects<i>Streptococcus dysgalactiae</i>against Phagocytosis by Bovine Neutrophils","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Bio-Systems (Canada)","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Agriculture - Saskatchewan","keywords":"Streptococcus dysgalactiae; Biology; Microbiology; Phagocytosis; Virulence; Mutant; Molecular biology; Escherichia coli; Mutagenesis; Gene; Streptococcus agalactiae; Bacteria; Streptococcus; Biochemistry; Genetics","score_opus":0.019546360163151564,"score_gpt":0.27457657647923406,"score_spread":0.25503021631608247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141376616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98885167,0.0002185545,0.00026457425,0.0004332609,0.00013001057,0.0022496965,0.000025505902,0.00031841922,0.0075083305],"genre_scores_gemma":[0.99680704,0.00047205057,0.00007948147,0.00019450419,0.00008326408,0.0003887982,0.00009548674,0.000036403624,0.001842959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986131,0.00015511116,0.00033967424,0.00035909508,0.00018183586,0.0003511849],"domain_scores_gemma":[0.9989392,0.0000437038,0.00014170483,0.00046912636,0.00016399262,0.00024226554],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001585493,0.0003148196,0.00037087052,0.00012492035,0.00047291786,0.0000813883,0.000049878512,0.000188214,0.00045000546],"category_scores_gemma":[0.00009279094,0.0002722591,0.00014236894,0.00046587642,0.00012746104,0.00026786217,0.000060534305,0.00048017153,0.00008565521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005198065,0.0020069813,0.4148821,0.00009911676,0.00029307758,0.000029397199,0.00008105333,0.0000116750525,0.55983305,0.000016648577,0.0012885485,0.02093854],"study_design_scores_gemma":[0.009646871,0.0033456488,0.4290928,0.0003241947,0.00023750089,0.00022176403,0.000079495956,0.00032559733,0.44162813,0.000110954046,0.11430765,0.0006793912],"about_ca_topic_score_codex":0.0024756494,"about_ca_topic_score_gemma":0.00004596093,"teacher_disagreement_score":0.11820492,"about_ca_system_score_codex":0.00015338407,"about_ca_system_score_gemma":0.000058676836,"threshold_uncertainty_score":0.99997294},"labels":[],"label_agreement":null},{"id":"W2141391869","doi":"10.1128/iai.72.10.5676-5686.2004","title":"The Glycan-Rich Outer Layer of the Cell Wall of<i>Mycobacterium tuberculosis</i>Acts as an Antiphagocytic Capsule Limiting the Association of the Bacterium with Macrophages","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; BC Children's Hospital; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Directorate for Biological Sciences","keywords":"Mycobacterium tuberculosis; Microbiology; Biology; Tuberculosis; Macrophage; Bacteria; Intracellular parasite; Mycobacterium; Virulence; In vitro; Biochemistry; Gene","score_opus":0.010316378196857084,"score_gpt":0.250882477990302,"score_spread":0.24056609979344493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141391869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958215,0.00012699279,0.000003935505,0.0017049981,0.00022251342,0.00048790395,0.0000225807,0.000013929135,0.0015956783],"genre_scores_gemma":[0.99869984,0.00064881874,0.000010539662,0.00030774117,0.00006276247,0.000020107007,0.000008206867,0.00001625011,0.00022573804],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99837506,0.00047432462,0.0003359961,0.00013638452,0.00041664456,0.00026156497],"domain_scores_gemma":[0.99818385,0.0003120757,0.00039978695,0.0006091074,0.00042588628,0.00006929776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008197964,0.00015388819,0.000248714,0.000044166067,0.00044162647,0.000058356723,0.00019839322,0.0001006605,0.00003943543],"category_scores_gemma":[0.00048476196,0.00006505042,0.00012948758,0.00037163458,0.00023331921,0.00017024018,0.0001391823,0.00044387754,0.0000033697618],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027298895,0.0004368252,0.5643932,0.00023683671,0.00017960054,0.0000012511971,0.0018565634,0.000019316985,0.4319246,0.00008461119,0.00009420082,0.00049998],"study_design_scores_gemma":[0.0008503067,0.0003510565,0.6252709,0.00010084176,0.000110417575,0.000020720747,0.00019414743,0.00000969486,0.37229875,0.000026600641,0.00071560044,0.00005096012],"about_ca_topic_score_codex":0.0047412617,"about_ca_topic_score_gemma":0.00066581514,"teacher_disagreement_score":0.060877696,"about_ca_system_score_codex":0.00012674775,"about_ca_system_score_gemma":0.00021698394,"threshold_uncertainty_score":0.71674013},"labels":[],"label_agreement":null},{"id":"W2141396945","doi":"10.1128/iai.00162-12","title":"Decreased Expression of Type 1 Fimbriae by a<i>pst</i>Mutant of Uropathogenic Escherichia coli Reduces Urinary Tract Infection","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Université Paris-Est Créteil Val-de-Marne","keywords":"Regulon; Fimbria; Virulence; Biology; Microbiology; Escherichia coli; Pilus; Mutant; Bacterial adhesin; Operon; Enterobacteriaceae; Fimbriae Proteins; Downregulation and upregulation; Gene; Genetics","score_opus":0.016392399714251285,"score_gpt":0.28533875395263986,"score_spread":0.2689463542383886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141396945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965175,0.0023390348,0.000106716056,0.000008270696,0.00014803148,0.00015957175,0.000014059459,0.000012760749,0.00069405814],"genre_scores_gemma":[0.99605113,0.0036400147,0.00008602199,0.000017736578,0.00005890539,0.000015194293,0.000044398857,0.000012532721,0.000074088646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990739,0.0002964496,0.00021342406,0.00012590893,0.000111853915,0.00017844283],"domain_scores_gemma":[0.999366,0.00003353599,0.00015104197,0.00020303542,0.00016246796,0.00008390962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039526448,0.00012303871,0.0001679099,0.00004830458,0.0001253556,0.000007481154,0.00005330215,0.00011880674,0.000028621984],"category_scores_gemma":[0.00039077233,0.00011182106,0.0000650268,0.00017681904,0.00013699007,0.000019719677,0.00012670353,0.00014814273,0.0000014799909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001802044,0.00070057233,0.09114401,0.000051256906,0.000033525044,1.4634443e-7,0.000069108755,0.0000019919617,0.90683544,0.0000043234936,0.0002653532,0.0007140717],"study_design_scores_gemma":[0.00030200306,0.00073312403,0.293661,0.000022847526,0.000019043131,0.000010105336,0.000030223478,0.000010840043,0.7004843,0.0000057637253,0.0046325056,0.00008827481],"about_ca_topic_score_codex":0.00039406287,"about_ca_topic_score_gemma":0.0000054491206,"teacher_disagreement_score":0.20635116,"about_ca_system_score_codex":0.000013665587,"about_ca_system_score_gemma":0.000053292293,"threshold_uncertainty_score":0.45599306},"labels":[],"label_agreement":null},{"id":"W2141482343","doi":"10.1128/iai.03123-14","title":"Selection for a CEACAM Receptor-Specific Binding Phenotype during Neisseria gonorrhoeae Infection of the Human Genital Tract","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Neisseria gonorrhoeae; Biology; Bacterial adhesin; Pathogen; Microbiology; Immunology; Phenotype; Context (archaeology); Chlamydia trachomatis; Sexually transmitted disease; Neisseriaceae; Innate immune system; Immune system; Virulence; Antibiotics; Genetics; Gene","score_opus":0.03507488449390977,"score_gpt":0.27098640010210084,"score_spread":0.23591151560819107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141482343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99632394,0.00013938833,0.00011057631,0.000026649359,0.0025325438,0.00035621977,0.000015306561,0.000094653165,0.00040074653],"genre_scores_gemma":[0.99910575,0.000089949295,0.000012893651,0.000005033846,0.00012869277,0.00003876225,0.0000563782,0.00001685656,0.0005457091],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991256,0.00021940148,0.00028981184,0.00016618385,0.000010221279,0.00018877372],"domain_scores_gemma":[0.99936116,0.00004373675,0.00020010017,0.0001725508,0.00019771095,0.000024753295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031352844,0.00015413096,0.00019522724,0.000145939,0.000813329,0.000039373368,0.000057745026,0.00021813669,0.00014858942],"category_scores_gemma":[0.000086936605,0.00012539206,0.00011340464,0.00029994675,0.00008362289,0.00026763728,0.000053728345,0.0003004493,0.000024347126],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010818445,0.00017290076,0.13785924,0.000024074656,0.00005514902,3.5236485e-9,0.00026179996,0.000008165626,0.8595395,0.00024053732,0.00039181166,0.0013386107],"study_design_scores_gemma":[0.0020611382,0.00046866445,0.70832723,0.000034318786,0.000054209013,0.00008816036,0.00010357286,0.0000055991054,0.22904724,0.00013541197,0.059465706,0.00020872768],"about_ca_topic_score_codex":0.0025750583,"about_ca_topic_score_gemma":0.0003242347,"teacher_disagreement_score":0.63049227,"about_ca_system_score_codex":0.00009626106,"about_ca_system_score_gemma":0.00003360255,"threshold_uncertainty_score":0.62555516},"labels":[],"label_agreement":null},{"id":"W2141626329","doi":"10.1128/iai.02287-14","title":"The Small RNA RyhB Contributes to Siderophore Production and Virulence of Uropathogenic Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"","keywords":"Biology; Siderophore; Mutant; Virulence; Enterobactin; Escherichia coli; Microbiology; Aerobactin; Genetics; Gene; Enterobacteriaceae","score_opus":0.011016711998156474,"score_gpt":0.2499331475577578,"score_spread":0.23891643555960132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141626329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970412,0.0012604552,0.0007511499,0.0003151413,0.000120608594,0.00020192955,0.0000020630368,0.000007978827,0.00029943613],"genre_scores_gemma":[0.9966985,0.0028264353,0.000085362444,0.000110030174,0.000050695744,0.000029842135,0.0000023814614,0.0000061960804,0.00019055323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993355,0.00022014097,0.00011866303,0.00014473703,0.000054254655,0.00012669977],"domain_scores_gemma":[0.99948066,0.000048165515,0.000050730072,0.00020658837,0.00017791221,0.000035943827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054857036,0.00008071091,0.00009405258,0.000023207695,0.00033046032,0.000028242186,0.00005759546,0.00004900273,8.9409883e-7],"category_scores_gemma":[0.0017942406,0.000060749848,0.000023577444,0.000114906135,0.00019455394,0.0000036081815,0.00017845079,0.00010707196,0.000001013235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007726415,0.000026538419,0.013505344,0.000020575952,0.000033577693,4.3897543e-8,0.00004298831,0.000005981203,0.97810465,0.00010691387,0.00015407277,0.007922043],"study_design_scores_gemma":[0.00025193224,0.0005641409,0.4526292,0.000023528088,0.000017078391,0.0000038858843,0.000088871544,0.00007932392,0.5147842,0.00014171716,0.031307135,0.000108994194],"about_ca_topic_score_codex":0.00024545557,"about_ca_topic_score_gemma":0.0004589899,"teacher_disagreement_score":0.46332046,"about_ca_system_score_codex":0.000007374867,"about_ca_system_score_gemma":0.000023304137,"threshold_uncertainty_score":0.25416672},"labels":[],"label_agreement":null},{"id":"W2141801137","doi":"10.1128/iai.00286-06","title":"Toll-Like Receptors Differentially Regulate CC and CXC Chemokines in Skeletal Muscle via NF-κB and Calcineurin","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada); McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé","keywords":"Biology; Chemokine; TLR4; TLR2; Calcineurin; Pyrrolidine dithiocarbamate; Innate immune system; Cell biology; CXCL10; TLR5; Toll-like receptor; Receptor; Signal transduction; Immunology; Inflammation; Internal medicine; NF-κB; Biochemistry; Transplantation; Medicine","score_opus":0.005056735366836845,"score_gpt":0.2069740216201827,"score_spread":0.20191728625334585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141801137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974708,0.0011375449,0.00005836956,0.00013513169,0.0005660334,0.00015889441,0.0000016425987,0.000054700442,0.00041688018],"genre_scores_gemma":[0.99757946,0.00064089,0.000006686817,0.00003583988,0.000026805174,0.000010772824,0.000071586735,0.000010596137,0.001617355],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990432,0.0002758786,0.00027599043,0.00018292834,0.000023891029,0.00019805711],"domain_scores_gemma":[0.9996505,0.00006951109,0.000085281055,0.0001464904,0.00003267787,0.00001553206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024447372,0.00016347706,0.00021433647,0.00017929528,0.0002535295,0.000033688906,0.000037024085,0.00021425656,0.00009808754],"category_scores_gemma":[0.000033377484,0.00015074383,0.000033957425,0.00011557837,0.00018826209,0.00020375302,0.00008378079,0.00027807907,0.000013416999],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019653272,0.00040028745,0.031288,0.00006409307,0.000052053932,0.0000028393242,0.0004863426,0.0000029308098,0.8646345,0.00022287565,0.00043984095,0.10220967],"study_design_scores_gemma":[0.0031250734,0.0001623446,0.8693655,0.000035163117,0.00002312567,0.00012462394,0.000048006557,0.00003675696,0.09367605,0.00023889358,0.032953817,0.00021060999],"about_ca_topic_score_codex":0.0036218227,"about_ca_topic_score_gemma":0.00069620006,"teacher_disagreement_score":0.83807755,"about_ca_system_score_codex":0.00002227781,"about_ca_system_score_gemma":0.0000123452655,"threshold_uncertainty_score":0.61471546},"labels":[],"label_agreement":null},{"id":"W2141832186","doi":"10.1128/iai.69.7.4417-4423.2001","title":"Tapeworm Infection Reduces Epithelial Ion Transport Abnormalities in Murine Dextran Sulfate Sodium-Induced Colitis","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Association of Gastroenterology","keywords":"Hymenolepis diminuta; Colitis; Biology; Myeloperoxidase; Immunology; Carbachol; Stimulation; Internal medicine; Pathology; Endocrinology; Inflammation; Medicine; Helminths","score_opus":0.02190089312830429,"score_gpt":0.28316062047513313,"score_spread":0.26125972734682884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141832186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99179184,0.00017978245,0.000057363162,0.00014482463,0.0013625141,0.0002087922,0.000023638224,0.00012323564,0.0061080297],"genre_scores_gemma":[0.9963298,0.0019234342,0.000004882986,0.0000671563,0.00007095301,0.00004038108,0.00014815551,0.000012644984,0.0014026337],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888176,0.00022509122,0.00035617643,0.00019851956,0.00003121317,0.00030722792],"domain_scores_gemma":[0.9995597,0.0000703758,0.000101666126,0.00016084487,0.000075471005,0.000031957516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028691837,0.00018736845,0.00024211247,0.00028309165,0.00044505944,0.000027278698,0.00005403682,0.00024699056,0.00087417744],"category_scores_gemma":[0.000036614103,0.00018761709,0.00009231281,0.00024410876,0.00011798793,0.00042919442,0.000021801121,0.0005767332,0.00013382125],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010602773,0.00065069855,0.48228112,0.00003369474,0.00014261823,0.000012952926,0.0017972771,0.000019735831,0.48968682,0.00068825233,0.000089622765,0.023536947],"study_design_scores_gemma":[0.0012508712,0.00031791424,0.8823111,0.000049411265,0.000028270631,0.00041229458,0.0001338415,0.0000064571623,0.07945815,0.00014588442,0.0356885,0.00019730449],"about_ca_topic_score_codex":0.035004172,"about_ca_topic_score_gemma":0.010839722,"teacher_disagreement_score":0.41022867,"about_ca_system_score_codex":0.0000768345,"about_ca_system_score_gemma":0.000036173566,"threshold_uncertainty_score":0.97142184},"labels":[],"label_agreement":null},{"id":"W2141938998","doi":"10.1128/iai.00369-07","title":"Fibrotic Response as a Distinguishing Feature of Resistance and Susceptibility to Pulmonary Infection with <i>Mycobacterium tuberculosis</i> in Mice","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; McGill University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; McGill University","keywords":"Biology; Mycobacterium tuberculosis; Gene expression profiling; Microarray; DNA microarray; Gene; Complementary DNA; Tuberculosis; Fold change; Microarray analysis techniques; Immunology; Gene expression; Molecular biology; Pathology; Genetics; Medicine","score_opus":0.0064218158348997596,"score_gpt":0.25703366268208394,"score_spread":0.2506118468471842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141938998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973855,0.00024896406,0.00011303291,0.00038326895,0.00009622304,0.0003765903,0.000010186134,0.00003858821,0.0013476333],"genre_scores_gemma":[0.99931026,0.00009275039,0.00011229678,0.00017599069,0.000052076644,0.000008372138,0.000015544865,0.000012882782,0.00021985162],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99902034,0.00019105773,0.00023634716,0.00023141473,0.00013327981,0.00018754414],"domain_scores_gemma":[0.9992744,0.0001512999,0.000079252655,0.00019419388,0.00015245215,0.00014841612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095603766,0.0001454402,0.00024259534,0.00018203333,0.0001261498,0.000023981831,0.00002376121,0.000109081535,0.000011434568],"category_scores_gemma":[0.000491821,0.00012844444,0.000046686207,0.00037181872,0.00011019412,0.00016678279,0.000051775092,0.0003167595,0.0000014381743],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.057963785,0.00042699286,0.70195484,0.0009888731,0.00003385794,0.000059561502,0.00084550213,0.000003858603,0.23563571,0.000051695235,0.000058186808,0.0019771152],"study_design_scores_gemma":[0.00053471624,0.0024203095,0.9906994,0.0009924878,0.00005677445,0.00019190532,0.00017356458,0.000019877321,0.0035444524,0.000040122814,0.0011916392,0.00013473186],"about_ca_topic_score_codex":0.0039765774,"about_ca_topic_score_gemma":0.0017999029,"teacher_disagreement_score":0.28874454,"about_ca_system_score_codex":0.00012454187,"about_ca_system_score_gemma":0.00005456436,"threshold_uncertainty_score":0.60114217},"labels":[],"label_agreement":null},{"id":"W2141943331","doi":"10.1128/iai.71.1.275-286.2003","title":"Age-Related Disparity in Functional Activities of Human Group C Serum Anticapsular Antibodies Elicited by Meningococcal Polysaccharide Vaccine","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; U.S. Food and Drug Administration; MacroGenics","keywords":"Neisseria meningitidis; Antibody; Titer; Immunology; Meningococcal disease; Avidity; Neisseriaceae; Meningococcal vaccine; Microbiology; Biology; Immunity; Antigen; Medicine; Immunization; Virology; Immune system; Bacteria; Antibiotics","score_opus":0.017184873590237893,"score_gpt":0.2438987586831618,"score_spread":0.2267138850929239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141943331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980154,0.00069192157,0.000039969047,0.000082936516,0.00050147297,0.00014659978,0.000033252563,0.00008539624,0.0004030652],"genre_scores_gemma":[0.9988877,0.00042432008,0.0000027944252,0.000019418916,0.000018425,0.000011469701,0.00011401396,0.000011568812,0.00051027344],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988999,0.0002692813,0.00039395288,0.00019057216,0.000019922867,0.00022636798],"domain_scores_gemma":[0.99953634,0.00007687454,0.00014275446,0.0001785461,0.000044860375,0.00002064247],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022296439,0.00018283991,0.00034322654,0.00025012626,0.0003757137,0.000024849265,0.000054086537,0.00025356846,0.001552213],"category_scores_gemma":[0.000047080448,0.00017146973,0.000074952404,0.00027972387,0.00014518584,0.00027559337,0.000077564364,0.00044272927,0.00001700652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004029573,0.0004070981,0.2461188,0.000017562299,0.00009789227,3.654675e-7,0.00018403002,0.0000013214095,0.7513226,0.00038750237,0.00059330347,0.0008291798],"study_design_scores_gemma":[0.0018315684,0.0002740536,0.9242305,0.00003884973,0.000038602087,0.000044365926,0.00008351911,0.000024516254,0.071645126,0.0001359599,0.0014725274,0.00018041402],"about_ca_topic_score_codex":0.006634168,"about_ca_topic_score_gemma":0.00063020457,"teacher_disagreement_score":0.6796775,"about_ca_system_score_codex":0.000028646635,"about_ca_system_score_gemma":0.0000043503182,"threshold_uncertainty_score":0.99998075},"labels":[],"label_agreement":null},{"id":"W2142200441","doi":"10.1128/iai.68.4.1787-1795.2000","title":"Cable-Piliated <i>Burkholderia cepacia</i> Binds to Cytokeratin 13 of Epithelial Cells","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Cytokeratin; Biology; Blot; Microbiology; Burkholderia; Molecular biology; Polyclonal antibodies; Monoclonal antibody; Antibody; Biochemistry; Bacteria; Immunohistochemistry; Immunology","score_opus":0.013519477483167121,"score_gpt":0.28762269863716855,"score_spread":0.27410322115400143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142200441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928546,0.000064093656,0.00014330813,0.00014636037,0.00011341785,0.00031104332,0.000037153153,0.00005210752,0.006277893],"genre_scores_gemma":[0.99703276,0.00029258613,0.0003458304,0.00016928189,0.00005154784,0.000014549769,0.000020976775,0.00001151023,0.0020609489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991518,0.00010500418,0.00022919381,0.0001346177,0.00018344293,0.0001959313],"domain_scores_gemma":[0.9993704,0.00007134498,0.000036880025,0.00023748439,0.0001239563,0.00015995122],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023153223,0.00010896596,0.00023089189,0.000121656914,0.00012733137,0.000022900538,0.000040386614,0.00006183249,0.002247705],"category_scores_gemma":[0.0001483038,0.00009596077,0.000047974776,0.0003441472,0.000098843186,0.0001096305,0.000030012527,0.0002200798,0.00011954676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005074999,0.00020127917,0.003409366,0.00007205707,0.000026389154,0.0000024939723,0.00029877207,0.00012218981,0.97283775,0.000006466026,0.0012573298,0.02125841],"study_design_scores_gemma":[0.0018768177,0.0014382399,0.1336585,0.00011121971,0.000029343171,0.000036534002,0.00007041354,0.00039791828,0.79226565,0.000043152402,0.06992596,0.00014624214],"about_ca_topic_score_codex":0.004092674,"about_ca_topic_score_gemma":0.00016093368,"teacher_disagreement_score":0.18057209,"about_ca_system_score_codex":0.000040726514,"about_ca_system_score_gemma":0.00005895692,"threshold_uncertainty_score":0.9986644},"labels":[],"label_agreement":null},{"id":"W2142385094","doi":"10.1128/iai.00914-09","title":"Morphine Disrupts Interleukin-23 (IL-23)/IL-17-Mediated Pulmonary Mucosal Host Defense against <i>Streptococcus</i> <i>pneumoniae</i> Infection","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute on Drug Abuse; National Institutes of Health; Faculté de Médecine, Université Laval; Université Laval; U.S. Department of Veterans Affairs","keywords":"Streptococcus pneumoniae; Immunology; Biology; Interleukin; Immune system; Population; Cytokine; Microbiology; Medicine; Antibiotics","score_opus":0.011349389933518264,"score_gpt":0.25785438988649956,"score_spread":0.2465049999529813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142385094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99070114,0.00038956723,0.000098647695,0.0005068059,0.0004628805,0.0006537789,0.0000798789,0.00049119885,0.006616108],"genre_scores_gemma":[0.9947065,0.0009530075,0.000007709848,0.0029188346,0.0003325715,0.000043269843,0.00052874,0.00003907713,0.00047025454],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813014,0.00022864708,0.00052431476,0.00041029873,0.00028646193,0.00042014985],"domain_scores_gemma":[0.99856883,0.00009462184,0.0002137383,0.0004938759,0.00021001339,0.0004189006],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027223187,0.00041621295,0.00046908887,0.0003008077,0.00046976362,0.000083042956,0.00007557647,0.0002662562,0.00008998761],"category_scores_gemma":[0.00024474392,0.00036114594,0.00025605492,0.0005384766,0.00020740177,0.00040783,0.00008569716,0.0007529315,0.00015915331],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006895885,0.0027000469,0.6706134,0.00020580286,0.00014488137,0.0002884576,0.00029695785,0.000034254237,0.2512522,0.00002868757,0.00623998,0.0675057],"study_design_scores_gemma":[0.0018673175,0.0012375369,0.92577463,0.00021690821,0.00014671347,0.0002783116,0.000073770796,0.0003518437,0.004462203,0.00004891055,0.06511909,0.00042275927],"about_ca_topic_score_codex":0.00026351624,"about_ca_topic_score_gemma":0.00009323072,"teacher_disagreement_score":0.2551612,"about_ca_system_score_codex":0.0001300153,"about_ca_system_score_gemma":0.00011368976,"threshold_uncertainty_score":0.99988407},"labels":[],"label_agreement":null},{"id":"W2142855333","doi":"10.1128/iai.73.4.2061-2074.2005","title":"Redundant Roles for Met Docking Site Tyrosines and the Gab1 Pleckstrin Homology Domain in InlB-Mediated Entry of <i>Listeria monocytogenes</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Liver physiology and pathology","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Pleckstrin homology domain; Biology; Listeria monocytogenes; Homology modeling; Docking (animal); Computational biology; Cell biology; Sequence homology; Plasma protein binding; Microbiology; Peptide sequence; Biochemistry; Genetics; Signal transduction; Bacteria; Enzyme; Gene","score_opus":0.01684634036457405,"score_gpt":0.2774208207731337,"score_spread":0.26057448040855963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142855333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979161,0.000916061,0.00009208587,0.00044405297,0.00009656374,0.00028598224,0.000014682067,0.000014871016,0.00021961766],"genre_scores_gemma":[0.9984425,0.0007995316,0.00014758295,0.00043847563,0.00006440618,0.000027528002,0.000046180223,0.000005468045,0.000028336157],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992492,0.00028025112,0.00021451274,0.0001097602,0.000026979484,0.00011928183],"domain_scores_gemma":[0.99942386,0.00028575715,0.00009098058,0.000129446,0.000044598404,0.000025360105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041672072,0.00008828242,0.0002773445,0.000089921596,0.00010507616,0.000005431982,0.000027162418,0.00011962321,0.000014347902],"category_scores_gemma":[0.00010602711,0.000061830135,0.000038016628,0.00009711177,0.0003360262,0.000056100987,0.000052963143,0.00016215756,0.0000013770998],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0081573855,0.00042247504,0.5432085,0.00023828822,0.00015882606,0.0000069964926,0.0065608267,0.000043023654,0.42839006,0.0023709252,0.00016956711,0.010273166],"study_design_scores_gemma":[0.011617534,0.0006704179,0.9469648,0.00007412506,0.00010444428,0.00035771262,0.0003134028,0.00028004308,0.031860366,0.0019469674,0.005676142,0.00013406946],"about_ca_topic_score_codex":0.00047022887,"about_ca_topic_score_gemma":0.00037646788,"teacher_disagreement_score":0.40375632,"about_ca_system_score_codex":0.000014314296,"about_ca_system_score_gemma":0.00002249876,"threshold_uncertainty_score":0.25213596},"labels":[],"label_agreement":null},{"id":"W2142873078","doi":"10.1128/iai.68.6.3412-3418.2000","title":"Jejunal Brush Border Microvillous Alterations in<i>Giardia muris</i>-Infected Mice: Role of T Lymphocytes and Interleukin-6","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Disaccharidase; Brush border; Maltase; Intraepithelial lymphocyte; Sucrase; Giardia lamblia; Microbiology; Ileum; Enterocyte; Giardia; Immunology; Immune system; Small intestine; Endocrinology; Enzyme","score_opus":0.003973695719010901,"score_gpt":0.24281030627516018,"score_spread":0.23883661055614927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142873078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99117553,0.0017744153,0.000049291015,0.000025843738,0.00023467006,0.00015919574,0.00003368298,0.00004852177,0.0064988453],"genre_scores_gemma":[0.99792933,0.0014376435,0.000033674758,0.00009949765,0.00001679262,0.000017449665,0.00007193967,0.000009481102,0.00038420685],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99908817,0.0002154678,0.0003051515,0.00016784173,0.000019989608,0.00020341061],"domain_scores_gemma":[0.99943185,0.00023141633,0.00006950459,0.00016104942,0.00008049612,0.000025678097],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016233015,0.00015278823,0.0002381897,0.00019121057,0.00025656933,0.000027012544,0.000042661562,0.0001978413,0.0010942239],"category_scores_gemma":[0.00010777361,0.00015254933,0.0000509575,0.00020210436,0.00025350275,0.0001460081,0.000037691905,0.00027131033,0.00006768704],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002962079,0.0009811292,0.44964474,0.00004895089,0.00020085266,0.0000036617937,0.0024905787,0.00008970088,0.45915997,0.00086645194,0.00053385017,0.08568393],"study_design_scores_gemma":[0.0027256515,0.00031537458,0.8798724,0.00007790275,0.000071184826,0.0003925334,0.00022448323,0.00008219005,0.08265272,0.0003602024,0.032942824,0.00028253597],"about_ca_topic_score_codex":0.007655549,"about_ca_topic_score_gemma":0.0007280386,"teacher_disagreement_score":0.43022767,"about_ca_system_score_codex":0.00004041028,"about_ca_system_score_gemma":0.000051982617,"threshold_uncertainty_score":0.9998189},"labels":[],"label_agreement":null},{"id":"W2142993603","doi":"10.1128/iai.01056-08","title":"Capsule Polysaccharide Conjugate Vaccine against Diarrheal Disease Caused by <i>Campylobacter jejuni</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Medical Research Council; Natural Sciences and Engineering Research Council of Canada; U.S. Navy; U.S. Department of Defense","keywords":"Campylobacter jejuni; Microbiology; Biology; Conjugate vaccine; Glycoconjugate; Virulence; Pathogen; Serotype; Conjugate; Virology; Diarrhea; Campylobacter; Bacteria; Antibiotics; Biochemistry; Medicine","score_opus":0.01792910363831536,"score_gpt":0.2169958101425404,"score_spread":0.19906670650422503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142993603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99739325,0.00044345125,0.000008465347,0.0010107599,0.00025316933,0.00015017498,0.000078431214,0.00013357504,0.000528725],"genre_scores_gemma":[0.994164,0.002769267,0.000003283405,0.0023997908,0.00014916087,0.000016044993,0.00019397786,0.0000017894787,0.0003026907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987656,0.00030727245,0.0002644073,0.00025904496,0.00008947356,0.00031418793],"domain_scores_gemma":[0.99932265,0.00014235917,0.000102108854,0.00010091824,0.000058603284,0.00027338095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023598401,0.00018902763,0.00024366792,0.000015879712,0.0005728862,0.000030025343,0.00010315354,0.00011394765,0.0003186333],"category_scores_gemma":[0.00010669327,0.00008595553,0.00009076945,0.00019488507,0.00009651347,0.00018323578,0.000076571094,0.00023933678,0.000057380727],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008192068,0.00027292,0.57416856,0.000007910015,0.000034863733,0.000011890438,0.000084704065,0.000001550815,0.40226325,0.000038939048,0.0099913785,0.013042093],"study_design_scores_gemma":[0.00033114522,0.00014721374,0.95324767,0.000008484576,0.00001451948,0.000019271487,0.000022025157,0.000031189928,0.0029557422,0.00011020906,0.042898577,0.0002139604],"about_ca_topic_score_codex":0.0029831885,"about_ca_topic_score_gemma":0.0003299005,"teacher_disagreement_score":0.39930752,"about_ca_system_score_codex":0.000026598485,"about_ca_system_score_gemma":0.000011108743,"threshold_uncertainty_score":0.45097086},"labels":[],"label_agreement":null},{"id":"W2143256071","doi":"10.1128/iai.00318-08","title":"Human Host Defense Peptide LL-37 Prevents Bacterial Biofilm Formation","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":682,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Alexander von Humboldt-Stiftung","keywords":"Biofilm; Microbiology; Biology; Quorum sensing; Pseudomonas aeruginosa; Innate immune system; Peptide; Bacteria; Antimicrobial peptides; Polymyxin B; Cathelicidin; In vitro; Polymyxin; Antimicrobial; Immune system; Biochemistry; Immunology; Antibiotics","score_opus":0.020242975279376973,"score_gpt":0.23806343791966544,"score_spread":0.21782046264028848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143256071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99592125,0.0000990163,0.00008315168,0.0000302901,0.0005248345,0.00014530064,0.000023468381,0.000095096366,0.0030775834],"genre_scores_gemma":[0.9964018,0.00031841837,0.00001996167,0.000089737696,0.000051064282,0.000007449485,0.0001698962,0.000009964088,0.0029317124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992768,0.00017914358,0.0002074259,0.00012178655,0.000019000268,0.00019582534],"domain_scores_gemma":[0.99965286,0.00002469295,0.00011186062,0.00015142008,0.000040951993,0.000018205536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012255626,0.00013891462,0.00017039881,0.00007319016,0.00097030506,0.000024747227,0.00005363619,0.00016511668,0.0005788806],"category_scores_gemma":[0.000024763287,0.00013105803,0.00007317147,0.00006792602,0.00023768558,0.00040717825,0.00007305883,0.00026108086,0.000182462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064380925,0.00015063111,0.0061642085,0.000020147663,0.00005175199,0.0000013480258,0.0006297521,7.924804e-7,0.9867136,0.00016226179,0.0052304436,0.00081070623],"study_design_scores_gemma":[0.0023982797,0.0005392989,0.4234247,0.00007206821,0.00005207496,0.00090998533,0.00027709213,0.0000031870773,0.51542896,0.00012437088,0.056327615,0.00044235936],"about_ca_topic_score_codex":0.0014868301,"about_ca_topic_score_gemma":0.00009825918,"teacher_disagreement_score":0.4712846,"about_ca_system_score_codex":0.000029615103,"about_ca_system_score_gemma":0.000017293438,"threshold_uncertainty_score":0.74629},"labels":[],"label_agreement":null},{"id":"W2143413085","doi":"10.1128/iai.00789-07","title":"Contribution of the SitABCD, MntH, and FeoB Metal Transporters to the Virulence of Avian Pathogenic <i>Escherichia coli</i> O78 Strain χ7122","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Armand-Frappier Foundation; U.S. Department of Agriculture","keywords":"Virulence; Biology; Microbiology; Pathogenic Escherichia coli; Complementation; Escherichia coli; Strain (injury); Enterobacteriaceae; Mutant; Genetics; Gene","score_opus":0.008858692981266191,"score_gpt":0.25626789805217737,"score_spread":0.2474092050709112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143413085","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99707586,0.0005974972,0.0015721322,0.00017397033,0.000070720096,0.00027788646,0.000047448135,0.000004015891,0.00018047904],"genre_scores_gemma":[0.9992429,0.00049440016,0.00003711771,0.00015077564,0.000022141785,0.000009435566,0.000009777571,0.0000048212014,0.000028645825],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993058,0.00015483086,0.00017447997,0.00011217708,0.00010832469,0.00014441305],"domain_scores_gemma":[0.9995043,0.000034605677,0.0000772615,0.00020071428,0.00013928486,0.000043780507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079118373,0.00008730017,0.00011749377,0.00002124516,0.00019122902,0.000007693167,0.00008962228,0.00006372609,0.0000036699182],"category_scores_gemma":[0.0001871353,0.000057496967,0.00006268564,0.00017192584,0.00024044534,0.0000059416657,0.00008426168,0.00013731973,2.6149095e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009401829,0.000049971004,0.030141845,0.000016543761,0.000059528713,1.6209718e-7,0.00022908475,0.0000055746777,0.9669904,0.000063980035,0.00001569678,0.0023331905],"study_design_scores_gemma":[0.0003236391,0.0002581459,0.7376139,0.000012185139,0.000028889199,0.0000034599827,0.00022625117,0.000009236704,0.25848275,0.000022607483,0.0029544772,0.000064423024],"about_ca_topic_score_codex":0.00037168432,"about_ca_topic_score_gemma":0.0011951289,"teacher_disagreement_score":0.70850766,"about_ca_system_score_codex":0.000008926032,"about_ca_system_score_gemma":0.000032437598,"threshold_uncertainty_score":0.23446582},"labels":[],"label_agreement":null},{"id":"W2143481959","doi":"10.1128/iai.69.2.917-923.2001","title":"<i>Staphylococcus aureus</i> Cap5O Has UDP-ManNAc Dehydrogenase Activity and Is Essential for Capsule Expression","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Staphylococcus aureus; Escherichia coli; Biology; Bacterial capsule; Microbiology; Dehydrogenase; Recombinant DNA; Mutant; Molecular biology; Enzyme; Biochemistry; Gene; Bacteria; Genetics","score_opus":0.011877739142400076,"score_gpt":0.24688710758846935,"score_spread":0.2350093684460693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143481959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972528,0.0004538507,0.0014139737,0.00028913192,0.00020455552,0.00022586668,0.000036384332,0.000022395645,0.00010103656],"genre_scores_gemma":[0.997619,0.0017033366,0.00010822496,0.00018154047,0.00015707657,0.00002807921,0.000052285613,0.000013379856,0.00013708764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993533,0.000050672777,0.00011511663,0.00025394213,0.000041807267,0.0001851627],"domain_scores_gemma":[0.99955225,0.000006123159,0.00006742949,0.00024394254,0.00006141734,0.000068859605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113043796,0.00014314699,0.00012646217,0.000043844117,0.00033692174,0.000053593994,0.00005792304,0.0003018266,0.000018534834],"category_scores_gemma":[0.000033230765,0.00013414778,0.00005598188,0.000059042763,0.00015696463,0.0000077861405,0.00013969213,0.00011728677,0.0000013858643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011992249,0.0000860366,0.0009899981,0.000017075636,0.000024024897,5.2093526e-7,0.00003350573,9.96964e-7,0.9922337,0.00000701977,0.0008626864,0.0056245155],"study_design_scores_gemma":[0.00064653915,0.00032736725,0.006967184,0.000006891853,0.000016550288,0.000017211363,0.000013418737,0.000049461567,0.88334525,0.000082711114,0.10837636,0.0001510642],"about_ca_topic_score_codex":0.00041367317,"about_ca_topic_score_gemma":0.00016844913,"teacher_disagreement_score":0.10888846,"about_ca_system_score_codex":0.000006720149,"about_ca_system_score_gemma":0.000027280872,"threshold_uncertainty_score":0.5470388},"labels":[],"label_agreement":null},{"id":"W2143563419","doi":"10.1128/iai.00872-06","title":"Structural Characterization of <i>Campylobacter jejuni</i> Lipooligosaccharide Outer Cores Associated with Guillain-Barre and Miller Fisher Syndromes","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; National Research Council Canada; Institute for Biological Sciences","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Campylobacter jejuni; Molecular mimicry; Biology; Microbiology; Guillain-Barre syndrome; Antibody; Genetics; Bacteria; Immunology","score_opus":0.013267040252621529,"score_gpt":0.2365775358914302,"score_spread":0.22331049563880867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143563419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988088,0.000045673045,0.000037731697,0.00011081606,0.0001536727,0.00015558916,0.000011957641,0.000038740753,0.00063703256],"genre_scores_gemma":[0.99888796,0.0001725625,0.000011399358,0.00058856996,0.00002268547,0.0000018224088,0.00006512519,0.000011887033,0.00023801123],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994198,0.00004466847,0.00018118737,0.000116156676,0.00010001972,0.0001381464],"domain_scores_gemma":[0.9995581,0.000034300978,0.00010423818,0.00012014833,0.00011319788,0.00007004395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013109196,0.000120584395,0.00019981358,0.000075079624,0.00011547224,0.000021770826,0.000020237767,0.00008022714,0.000107076245],"category_scores_gemma":[0.00007759536,0.000090145164,0.000029719,0.00013766738,0.0001188266,0.00013344687,0.000028405491,0.00015276948,6.4722377e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039411383,0.00009210783,0.9296429,0.00007579912,0.00008817717,0.0000112423795,0.0005338722,9.16237e-7,0.06256205,0.000015677846,0.000113810645,0.0064693177],"study_design_scores_gemma":[0.0012055429,0.00043285036,0.995037,0.00008185903,0.00004215373,0.00008742231,0.00008299484,0.000055301458,0.0019550256,0.000013632376,0.00090207387,0.000104151186],"about_ca_topic_score_codex":0.00040435186,"about_ca_topic_score_gemma":0.00031780187,"teacher_disagreement_score":0.06539408,"about_ca_system_score_codex":0.00001760427,"about_ca_system_score_gemma":0.000013686611,"threshold_uncertainty_score":0.3676013},"labels":[],"label_agreement":null},{"id":"W2143574241","doi":"10.1128/iai.72.6.3436-3443.2004","title":"A Heptosyltransferase Mutant of <i>Pasteurella multocida</i> Produces a Truncated Lipopolysaccharide Structure and Is Attenuated in Virulence","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Australian Research Council","keywords":"Pasteurella multocida; Complementation; Biology; Fowl cholera; Virulence; Mutant; Mutagenesis; Pasteurellosis; Microbiology; Yersinia enterocolitica; Pasteurella; Lipopolysaccharide; Insertional mutagenesis; Gene; Molecular biology; Genetics; Bacteria; Immunology","score_opus":0.011084698865331472,"score_gpt":0.25425263656179126,"score_spread":0.24316793769645978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143574241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819547,0.0010047406,0.000046177232,0.00014283686,0.0001040144,0.00032370104,0.00009262299,0.000037126203,0.000053339976],"genre_scores_gemma":[0.998854,0.0009574816,0.000007594944,0.000092450646,0.000007590655,0.000010667277,0.00003048025,0.000009146973,0.00003060943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991014,0.00014075145,0.00027098838,0.00023667655,0.00003179023,0.00021837083],"domain_scores_gemma":[0.9995707,0.000043587155,0.00006110781,0.00018395933,0.000104446495,0.00003616444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018781207,0.0001523478,0.00023440087,0.00022291199,0.00020458443,0.000022569917,0.000055064378,0.00017710713,0.00023827591],"category_scores_gemma":[0.00007841641,0.00013444056,0.000043094227,0.0002974943,0.0003037709,0.0001353804,0.000052979176,0.00041061587,0.0000114466875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016882058,0.0002307025,0.020349855,0.00007123784,0.000053816897,0.0000018539704,0.0008349262,0.000016883869,0.975841,0.00015445566,0.00001615665,0.0022602794],"study_design_scores_gemma":[0.0022130103,0.0002282963,0.035930365,0.000091492155,0.000025592348,0.000115392686,0.00013332441,0.00000858536,0.9604108,0.00037522218,0.00031633227,0.00015160949],"about_ca_topic_score_codex":0.012862028,"about_ca_topic_score_gemma":0.00077174854,"teacher_disagreement_score":0.015580512,"about_ca_system_score_codex":0.000032437598,"about_ca_system_score_gemma":0.00007897686,"threshold_uncertainty_score":0.9937114},"labels":[],"label_agreement":null},{"id":"W2143596010","doi":"10.1128/iai.00813-09","title":"Role of Trehalose Biosynthesis in <i>Aspergillus fumigatus</i> Development, Stress Response, and Virulence","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; McGill University Health Centre; McGill University","keywords":"Virulence; Aspergillus fumigatus; Biology; Microbiology; Biosynthesis; Biochemistry; Enzyme; Gene","score_opus":0.00720453056989934,"score_gpt":0.24954665174582835,"score_spread":0.24234212117592902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143596010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99857974,0.00016565596,0.0000056675362,0.00004886047,0.00004032201,0.00011484095,0.000006274069,0.000018664663,0.0010199589],"genre_scores_gemma":[0.9994484,0.00026014145,0.00013198853,0.000037074493,0.0000085571655,0.000004263217,0.0000033055248,0.0000053655294,0.00010088073],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999377,0.00009753111,0.00019882948,0.00013277508,0.000084069594,0.00010976055],"domain_scores_gemma":[0.99948967,0.00014671651,0.00004969569,0.0001858734,0.000061493774,0.00006657581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048631628,0.00008642451,0.00018073697,0.00011163141,0.000088361456,0.000009081261,0.000026716678,0.00009638712,0.00005904468],"category_scores_gemma":[0.00044094058,0.00007534855,0.000023703238,0.00015472286,0.00017763156,0.00009377534,0.00003641711,0.000281079,0.0000027155106],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005190373,0.00012396091,0.57765687,0.000040829127,0.0000067193632,9.1874625e-7,0.00035888355,5.0629517e-8,0.40326703,0.000025783025,0.0000021131873,0.017997805],"study_design_scores_gemma":[0.00037995653,0.000078885714,0.81830305,0.00007072985,0.000008418577,0.0000081217595,0.00024245649,0.000013342979,0.17956974,0.0000377947,0.001228372,0.00005916092],"about_ca_topic_score_codex":0.00071860163,"about_ca_topic_score_gemma":0.0032269275,"teacher_disagreement_score":0.24064614,"about_ca_system_score_codex":0.000017755518,"about_ca_system_score_gemma":0.00007288273,"threshold_uncertainty_score":0.30726248},"labels":[],"label_agreement":null},{"id":"W2143690532","doi":"10.1128/iai.68.11.6281-6288.2000","title":"Molecular Cloning and Analysis of a Putative Siderophore ABC Transporter from <i>Staphylococcus aureus</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council","keywords":"Operon; Biology; Staphylococcus aureus; ATP-binding cassette transporter; Bacillus subtilis; Microbiology; Escherichia coli; Molecular biology; Biochemistry; Transporter; Gene; Bacteria; Genetics","score_opus":0.005003334570153126,"score_gpt":0.22029237912345065,"score_spread":0.21528904455329753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143690532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984962,0.0006594346,0.00038036433,0.000047476216,0.000027114387,0.00006736126,0.00008693704,0.000008622842,0.00022649337],"genre_scores_gemma":[0.99798375,0.0014624823,0.00013571729,0.00011794981,0.000015644546,0.000004254992,0.0002542174,0.0000067263127,0.000019261313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994694,0.000055815643,0.00015625462,0.00018327715,0.000038819067,0.00009645896],"domain_scores_gemma":[0.99969125,0.000006865867,0.000052952517,0.00017446988,0.000038575126,0.000035865945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006228387,0.00010315691,0.00017595253,0.00007405225,0.00006391874,0.000013800146,0.000041139956,0.00018274643,0.00006256846],"category_scores_gemma":[0.000008139553,0.0000973645,0.000073402676,0.00017905894,0.00014211982,0.0000029338878,0.000026037942,0.000094709074,5.053868e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006206896,0.00003744865,0.0130746225,0.0000042611155,0.00041269587,0.0000010005442,0.0001229494,0.000056007917,0.97508025,0.000008863323,0.0000049027717,0.01113495],"study_design_scores_gemma":[0.00035124947,0.0002457481,0.24600922,0.000004397548,0.00028226097,0.0000015470973,0.000035229357,0.00012457679,0.7491287,0.000096725606,0.0035950856,0.00012528182],"about_ca_topic_score_codex":0.0010788011,"about_ca_topic_score_gemma":0.00014920751,"teacher_disagreement_score":0.2329346,"about_ca_system_score_codex":0.0000028581342,"about_ca_system_score_gemma":0.00001067166,"threshold_uncertainty_score":0.3970409},"labels":[],"label_agreement":null},{"id":"W2144017255","doi":"10.1128/iai.68.11.6362-6369.2000","title":"Inverse Relation between Disease Severity and Expression of the Streptococcal Cysteine Protease, SpeB, among Clonal M1T1 Isolates Recovered from Invasive Group A Streptococcal Infection Cases","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Cysteine protease; Protease; Streptococcus; Biology; Group A; Microbiology; Proteases; Virulence; Streptococcus pyogenes; Enzyme; Virology; Bacteria; Biochemistry; Gene; Staphylococcus aureus; Medicine; Genetics; Internal medicine","score_opus":0.02161868160461943,"score_gpt":0.262555845270506,"score_spread":0.24093716366588658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144017255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972634,0.000056128025,0.00004402148,0.000051167208,0.00011305616,0.001776447,0.00024988386,0.00008450356,0.00036141186],"genre_scores_gemma":[0.9988294,0.00023756787,0.000058907764,0.000029733226,0.00012514603,0.00016451736,0.00039240863,0.000019122257,0.00014318142],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985281,0.0003428554,0.00042838138,0.00034500635,0.00016946433,0.00018619529],"domain_scores_gemma":[0.9987942,0.00024895603,0.0002265627,0.00038375895,0.0001091163,0.00023740878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014456557,0.0002646834,0.00034118094,0.00011919197,0.0004671671,0.00004650037,0.00003699402,0.00020156319,0.0005955698],"category_scores_gemma":[0.00030066143,0.00019929855,0.00016348397,0.00030355464,0.00029688436,0.00047302482,0.0000894459,0.000436743,0.000009059052],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004650466,0.0004794334,0.9824465,0.00008167941,0.000118701944,0.0000049620353,0.00015974486,0.000015363112,0.008430403,0.000006658237,0.000052919717,0.0077385814],"study_design_scores_gemma":[0.0023994658,0.00058146525,0.98677593,0.0005086913,0.00031022736,0.000025739422,0.000031843858,0.00023448089,0.008130266,0.00044475828,0.00038034964,0.00017679083],"about_ca_topic_score_codex":0.017697979,"about_ca_topic_score_gemma":0.0011719629,"teacher_disagreement_score":0.016526015,"about_ca_system_score_codex":0.000119191995,"about_ca_system_score_gemma":0.00007435035,"threshold_uncertainty_score":0.98884326},"labels":[],"label_agreement":null},{"id":"W2144201356","doi":"10.1128/iai.68.9.5090-5095.2000","title":"Human Response to <i>Escherichia coli</i> O157:H7 Infection: Antibodies to Secreted Virulence Factors","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of British Columbia","funders":"","keywords":"Intimin; Virulence; Biology; Microbiology; Antigen; Escherichia coli; Bacterial outer membrane; Immune system; Antibody; Bacterial adhesin; Lipopolysaccharide; Titer; Virology; Antibody titer; Immunoglobulin G; Enterobacteriaceae; Immunology; Gene","score_opus":0.01765294194458813,"score_gpt":0.30615195193217737,"score_spread":0.28849900998758926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144201356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962927,0.00009541061,0.0001323798,0.0001988298,0.00011196912,0.00034611477,0.000015119906,0.00005856795,0.0027488898],"genre_scores_gemma":[0.9960978,0.00047138476,0.00009256691,0.000678256,0.00008193559,0.000054129756,0.000020069938,0.000019247007,0.002484604],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99863976,0.00040546875,0.00019434148,0.0003107121,0.00014645686,0.00030327923],"domain_scores_gemma":[0.99922097,0.00003406037,0.000035642614,0.00035710222,0.000153439,0.00019877568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043850168,0.00021051563,0.00018391728,0.00010185341,0.000681886,0.00007846432,0.00010484684,0.00012544087,0.0001801531],"category_scores_gemma":[0.00038876486,0.00020354408,0.00006847826,0.00038397987,0.000118158736,0.000015919371,0.00019923417,0.00023151468,0.000050467595],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042791755,0.00008293989,0.07441403,0.000016785865,0.00005890837,9.208297e-7,0.00034520027,0.00005422232,0.921873,0.000007569454,0.0013769694,0.0013415768],"study_design_scores_gemma":[0.00029652452,0.0010076623,0.7514554,0.000020166084,0.000009511145,0.0000035064268,0.00005288652,0.0000065230697,0.0801389,0.000009766622,0.16676307,0.00023607122],"about_ca_topic_score_codex":0.0019946299,"about_ca_topic_score_gemma":0.0007031204,"teacher_disagreement_score":0.84173405,"about_ca_system_score_codex":0.00003769006,"about_ca_system_score_gemma":0.00004930799,"threshold_uncertainty_score":0.8300287},"labels":[],"label_agreement":null},{"id":"W2144379375","doi":"10.1128/iai.73.10.6736-6741.2005","title":"Isocitrate Lyase Activity Is Required for Virulence of the Intracellular Pathogen <i>Rhodococcus equi</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Health Research Board","keywords":"Rhodococcus equi; Virulence; Biology; Isocitrate lyase; Microbiology; Pathogen; Intracellular; Human pathogen; Rhodococcus; Virology; Bacteria; Biochemistry; Enzyme; Genetics; Gene; Glyoxylate cycle","score_opus":0.023856054230423102,"score_gpt":0.2912029824944653,"score_spread":0.2673469282640422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144379375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99658054,0.00022875749,0.00044928593,0.00028323906,0.00014597608,0.0006212238,0.000053541404,0.00003752507,0.0015998994],"genre_scores_gemma":[0.9989047,0.00022020405,0.00004879459,0.00038812307,0.00006859074,0.00004518976,0.000010383943,0.000011694468,0.0003023076],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993381,0.00007234875,0.00019225093,0.00014348158,0.000107671374,0.00014615578],"domain_scores_gemma":[0.99926025,0.000045417353,0.00016576963,0.00030806562,0.00014419064,0.00007628121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023361754,0.00012233964,0.00019354007,0.000039381524,0.00026811776,0.000015606982,0.000024958092,0.00007982353,0.00007160507],"category_scores_gemma":[0.000091791844,0.00008546323,0.00017012085,0.0001210801,0.00010791963,0.0001321049,0.00003566122,0.00012877259,0.0000044297276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082025805,0.00303383,0.21891606,0.0005152614,0.0006072409,0.000022617278,0.0010304693,0.000019521856,0.6107423,0.0003366941,0.0007232792,0.1632325],"study_design_scores_gemma":[0.004356054,0.0008184516,0.39996585,0.00017232333,0.0007370621,0.00034787602,0.00005205174,0.0008959574,0.5605728,0.0005104084,0.031290587,0.00028058037],"about_ca_topic_score_codex":0.00050554844,"about_ca_topic_score_gemma":0.000026274967,"teacher_disagreement_score":0.18104981,"about_ca_system_score_codex":0.00007730328,"about_ca_system_score_gemma":0.000090075824,"threshold_uncertainty_score":0.34850892},"labels":[],"label_agreement":null},{"id":"W2144480372","doi":"10.1128/iai.69.11.6573-6579.2001","title":"Enteropathogenic <i>Escherichia</i> <i>coli</i> Virulence Factor Bundle-Forming Pilus Has a Binding Specificity for Phosphatidylethanolamine","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Metropolitan University","funders":"Hospital for Sick Children; Medical Research Council; Crohn's and Colitis Foundation of Canada; Medical Research Council Canada; Crohn's and Colitis Foundation","keywords":"Pilus; Biology; Enteropathogenic Escherichia coli; Microbiology; Plasmid; Escherichia coli; Virulence; Bacterial adhesin; Virulence factor; Phosphatidylethanolamine; Mutant; Liposome; Phosphatidylcholine; Gene; Biochemistry; Phospholipid","score_opus":0.034593273125173275,"score_gpt":0.2807444310158826,"score_spread":0.24615115789070932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144480372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902044,0.00090125314,0.0073528844,0.00007919109,0.00024567594,0.00043543964,0.000037784903,0.00003946234,0.0007038923],"genre_scores_gemma":[0.99564767,0.0028514874,0.0004115074,0.00025245588,0.00018496596,0.00010490582,0.000033046777,0.000024393406,0.0004895712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988875,0.00010526037,0.00022167439,0.00030246205,0.000121786325,0.00036134545],"domain_scores_gemma":[0.99933946,0.000049067254,0.0001003876,0.00027123187,0.00014263233,0.00009719129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003200204,0.00020707575,0.00019101608,0.00005884748,0.0006211245,0.000095017866,0.00012519205,0.00012099696,0.000021532027],"category_scores_gemma":[0.000303939,0.00020081323,0.00010866446,0.00019209654,0.0001654095,0.000023647808,0.000209317,0.0002097115,0.000006844527],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000198636,0.00018130377,0.03478732,0.000046638834,0.0000656479,9.812089e-7,0.00012296005,0.0000036421204,0.96108675,0.000020927326,0.00018385278,0.0033013676],"study_design_scores_gemma":[0.0023597875,0.0020359934,0.09159208,0.00007226098,0.00004309447,0.000052519837,0.00021611188,0.00046398706,0.5803194,0.00007026547,0.32210368,0.00067078596],"about_ca_topic_score_codex":0.00025433372,"about_ca_topic_score_gemma":0.00020946884,"teacher_disagreement_score":0.38076732,"about_ca_system_score_codex":0.000042538584,"about_ca_system_score_gemma":0.00005095001,"threshold_uncertainty_score":0.81889254},"labels":[],"label_agreement":null},{"id":"W2144530802","doi":"10.1128/iai.68.7.4245-4254.2000","title":"Genetic Locus for Streptolysin S Production by Group A Streptococcus","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; Medical Research Council Canada","keywords":"Biology; Operon; Genetics; Locus (genetics); Streptococcus pyogenes; Streptolysin; Plasmid; Gene; Molecular biology; Mutant; Staphylococcus aureus; Bacteria","score_opus":0.013185172352908432,"score_gpt":0.27787197701551125,"score_spread":0.2646868046626028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144530802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960041,0.00021705417,0.00042964568,0.00012993738,0.00016751004,0.0011198327,0.000016855074,0.00013472086,0.0017803442],"genre_scores_gemma":[0.99665433,0.0003729921,0.00018146534,0.00008928971,0.000115230636,0.00034465286,0.00008396363,0.000017329023,0.0021407714],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9992575,0.000046093566,0.0002011113,0.0002437359,0.000076085584,0.0001754798],"domain_scores_gemma":[0.99950355,0.00002859565,0.000047034566,0.0002487539,0.000073064264,0.000099026125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008017612,0.0001496596,0.00018264525,0.00007880983,0.0003050731,0.00003407917,0.000018009123,0.00009018379,0.0008674564],"category_scores_gemma":[0.000042090196,0.00013100072,0.00009459057,0.00019321556,0.00007472403,0.00011121347,0.000009392276,0.00013906996,0.000041398413],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002493965,0.0013985725,0.36906904,0.000074643416,0.00022161848,0.0000019246838,0.00008953268,0.000014661416,0.016005663,0.000029249955,0.004409482,0.6084362],"study_design_scores_gemma":[0.0030607113,0.0016361715,0.8824858,0.00006352936,0.0002600381,0.000138033,0.000039049693,0.00019209973,0.008859392,0.00027342126,0.10276055,0.00023118347],"about_ca_topic_score_codex":0.0010180036,"about_ca_topic_score_gemma":0.000065662636,"teacher_disagreement_score":0.608205,"about_ca_system_score_codex":0.000067974695,"about_ca_system_score_gemma":0.000018658131,"threshold_uncertainty_score":0.9498039},"labels":[],"label_agreement":null},{"id":"W2144585413","doi":"10.1128/iai.72.12.7115-7123.2004","title":"Antigenicity and Immunogenicity of a Synthetic Oligosaccharide-Protein Conjugate Vaccine against <i>Haemophilus influenzae</i> Type b","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Rijksinstituut voor Volksgezondheid en Milieu; Pan American Health Organization; National Institutes of Health; Ministerio de Ciencia, Tecnología y Medio Ambiente","keywords":"Immunogenicity; Antigenicity; Haemophilus influenzae; Conjugate vaccine; Antigen; Microbiology; Biology; Virology; Bacterial capsule; Antibody; Immunology; Virulence; Antibiotics; Biochemistry","score_opus":0.038157445846080724,"score_gpt":0.3179457080944579,"score_spread":0.27978826224837716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144585413","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960238,0.0022364676,0.00004460705,0.00024486534,0.00008893153,0.0005286828,0.000014451735,0.000073916206,0.0007442797],"genre_scores_gemma":[0.9955378,0.0039116764,0.00011299215,0.0003405868,0.000031175652,0.000014408799,0.000006668318,0.000017642877,0.00002701984],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99875087,0.00011624971,0.00040728928,0.00022471676,0.00021787961,0.00028298216],"domain_scores_gemma":[0.998893,0.0000757583,0.00013815204,0.00037105207,0.00039120173,0.00013078791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005002239,0.00021083729,0.0004593725,0.00018746076,0.00032450142,0.000025257583,0.00006181702,0.00012418233,0.00003178451],"category_scores_gemma":[0.00088349526,0.00018384011,0.00008087096,0.00036564638,0.00029161404,0.00016955356,0.00021269359,0.00046712018,0.00001739932],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017597651,0.00046491274,0.086282454,0.0005517526,0.00046607223,0.000018740704,0.00093259645,0.000046169138,0.90043014,0.00047660994,0.000025512501,0.008545294],"study_design_scores_gemma":[0.006517346,0.0014024253,0.575891,0.0005224144,0.00013569725,0.00014782013,0.0001291783,0.00006395151,0.4117753,0.00092353305,0.0021583303,0.00033299363],"about_ca_topic_score_codex":0.004031543,"about_ca_topic_score_gemma":0.00011022713,"teacher_disagreement_score":0.48960856,"about_ca_system_score_codex":0.000087244945,"about_ca_system_score_gemma":0.00012219665,"threshold_uncertainty_score":0.7496782},"labels":[],"label_agreement":null},{"id":"W2144728717","doi":"10.1128/iai.70.6.3156-3163.2002","title":"Uptake of<i>Aspergillus fumigatus</i>Conidia by Phagocytic and Nonphagocytic Cells In Vitro: Quantitation Using Strains Expressing Green Fluorescent Protein","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Simon Fraser University","keywords":"Biology; Aspergillus fumigatus; Microbiology; Conidium; In vitro; Green fluorescent protein; Fluorescence; Fungi imperfecti; Aspergillus; Aspergillosis; Fluorescent protein; Immunology; Biochemistry; Botany; Gene","score_opus":0.03426539306173962,"score_gpt":0.27403459609191044,"score_spread":0.23976920303017082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144728717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770784,0.0011065622,0.00038067964,0.000029061464,0.000056693178,0.0004158731,0.000016363321,0.000025744199,0.00026117216],"genre_scores_gemma":[0.99909514,0.00029380867,0.00042076726,0.00003233057,0.00001699999,0.0000053946883,0.00001228236,0.000012858419,0.000110423054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989676,0.00012335756,0.00035736652,0.0002042745,0.00015299708,0.00019443182],"domain_scores_gemma":[0.99949026,0.0000337772,0.00011030433,0.00019054482,0.000085133404,0.00008996382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028318775,0.0001470708,0.0002911563,0.000119599164,0.00013930723,0.000028950382,0.000027853417,0.000107664004,0.000044918284],"category_scores_gemma":[0.00009871254,0.00014027042,0.00005134812,0.00020316041,0.00018045056,0.00023350967,0.00002797948,0.0002761912,0.0000026780249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001434026,0.00027465733,0.010046255,0.00034281905,0.000018323326,0.000004683061,0.0007400098,0.000004591027,0.97609186,0.000013749506,0.00001199687,0.012307674],"study_design_scores_gemma":[0.0036623653,0.0004847168,0.24180177,0.0006285219,0.00010066615,0.000031573712,0.00072422606,0.016741714,0.7351202,0.00006239577,0.00033968617,0.0003021658],"about_ca_topic_score_codex":0.002430993,"about_ca_topic_score_gemma":0.00012380423,"teacher_disagreement_score":0.24097164,"about_ca_system_score_codex":0.000120311706,"about_ca_system_score_gemma":0.00004008398,"threshold_uncertainty_score":0.57200617},"labels":[],"label_agreement":null},{"id":"W2144819671","doi":"10.1128/iai.02832-14","title":"Uncoupling of Pro- and Anti-Inflammatory Properties of Staphylococcus aureus","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Centre Hospitalier de l’Université de Montréal; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Proinflammatory cytokine; TLR2; Staphylococcus aureus; Biology; Microbiology; Population; Phagocytosis; Protein kinase B; PI3K/AKT/mTOR pathway; Immunology; TLR4; Signal transduction; Inflammation; Cell biology; Bacteria; Medicine","score_opus":0.030095728209729677,"score_gpt":0.23936159628519846,"score_spread":0.2092658680754688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144819671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953413,0.00384612,0.000051749594,0.000025727657,0.00020528304,0.00017104456,0.0000016736299,0.000028262803,0.0003288575],"genre_scores_gemma":[0.9994895,0.00034535516,0.0000092512255,0.000007485733,0.000007988468,0.0000066988428,0.0000069751727,0.00000566561,0.00012112294],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993378,0.0001759233,0.00027598412,0.000080953585,0.000027565073,0.0001018108],"domain_scores_gemma":[0.9994597,0.000030323316,0.00016381708,0.00014764964,0.00018425277,0.000014274582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005057862,0.000090645866,0.00019947781,0.0001246937,0.00009494995,0.000006987347,0.000039920913,0.00012648833,0.00001372132],"category_scores_gemma":[0.00016359841,0.00007467307,0.000029065293,0.00008022303,0.00026240136,0.00016610042,0.00006387836,0.00015433805,0.000006826044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020765276,0.0000531519,0.030097943,0.000102858605,0.000063495296,1.6740047e-7,0.0015074443,0.000012729443,0.96491045,0.0001736177,0.000047485217,0.0028230331],"study_design_scores_gemma":[0.000919351,0.00021396548,0.08605091,0.00008580665,0.000023765862,0.000012808912,0.0006266352,0.000023736957,0.9089372,0.000056470974,0.00295854,0.00009077841],"about_ca_topic_score_codex":0.00058845,"about_ca_topic_score_gemma":0.00001643859,"teacher_disagreement_score":0.055973195,"about_ca_system_score_codex":0.000013074935,"about_ca_system_score_gemma":0.00006972721,"threshold_uncertainty_score":0.30450794},"labels":[],"label_agreement":null},{"id":"W2144882226","doi":"10.1128/iai.71.10.5662-5669.2003","title":"Oral Immunization of BALB/c Mice with <i>Giardia duodenalis</i> Recombinant Cyst Wall Protein Inhibits Shedding of Cysts","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Immunogenicity; Antibody; Giardia lamblia; Recombinant DNA; Immunoglobulin A; Virology; Giardia; Immunization; Immune system; Microbiology; Antigen; Immunoglobulin G; Immunology; Gene","score_opus":0.008707923042820814,"score_gpt":0.23004305462713642,"score_spread":0.22133513158431561,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144882226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99297243,0.00034139148,0.0015283502,0.00001604618,0.00030829394,0.0002960296,0.000014833809,0.000034370292,0.0044882647],"genre_scores_gemma":[0.9992998,0.00015414761,0.00017342772,0.000024842375,0.000003741446,0.000018829678,0.00006437011,0.0000124122525,0.00024841743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988372,0.00045254373,0.00034936058,0.0001391554,0.000036561883,0.0001852265],"domain_scores_gemma":[0.9990991,0.00013980921,0.00024157688,0.00021924166,0.00027987352,0.000020424539],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045937693,0.0001518954,0.0002970883,0.0001567174,0.0002436724,0.0000116033925,0.00005005902,0.00018458314,0.00011995038],"category_scores_gemma":[0.00033407894,0.00013080788,0.000054469525,0.0003185851,0.00022316189,0.00016003603,0.000031230094,0.00026854753,0.000016021575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019702007,0.0007900842,0.09236834,0.00014669033,0.00023732928,0.000001954241,0.000593601,0.000099800796,0.8942956,0.009674765,0.00018381061,0.0014110245],"study_design_scores_gemma":[0.0028506161,0.0009408187,0.08758589,0.00034177635,0.000119899414,0.0003886095,0.00019779471,0.00001595285,0.89987403,0.00032826932,0.0070678755,0.00028845828],"about_ca_topic_score_codex":0.0024775777,"about_ca_topic_score_gemma":0.00014664835,"teacher_disagreement_score":0.009346496,"about_ca_system_score_codex":0.00003286766,"about_ca_system_score_gemma":0.00007228219,"threshold_uncertainty_score":0.5334191},"labels":[],"label_agreement":null},{"id":"W2144888379","doi":"10.1128/iai.00741-06","title":"Characterization of the Outer Membrane Proteome of <i>Leptospira interrogans</i> Expressed during Acute Lethal Infection","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Leptospira; Proteome; Leptospira interrogans; Biology; Antiserum; Microbiology; In vitro; Bacterial outer membrane; Leptospirosis; Virology; Serotype; Antigen; Immunology; Gene; Escherichia coli; Biochemistry","score_opus":0.007589132613866596,"score_gpt":0.22028450599788668,"score_spread":0.2126953733840201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144888379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985845,0.000021034151,0.00020222228,0.00008080483,0.00030744853,0.0003257359,0.000033471006,0.00003358256,0.00041118974],"genre_scores_gemma":[0.999214,0.00007781615,0.0000037806224,0.000017407965,0.00002203791,0.000027096528,0.000066329485,0.000008984056,0.0005625506],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915725,0.00020844892,0.00029422232,0.00012543472,0.000047156813,0.00016747203],"domain_scores_gemma":[0.9994278,0.00002197815,0.00022322145,0.00020836637,0.000107833344,0.000010822267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018430669,0.0001129961,0.00018800046,0.00011491723,0.00022639528,0.000015045418,0.00008656951,0.00016332019,0.00013663906],"category_scores_gemma":[0.00003801224,0.00008493949,0.000093604,0.00020127471,0.00025098628,0.000228927,0.0001209008,0.0003203411,0.000009879533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000105214174,0.00014439502,0.068706945,0.00006859271,0.00006076114,1.7733551e-7,0.0002427623,0.0000013548879,0.93027675,0.000045508234,0.0000132886325,0.00033426605],"study_design_scores_gemma":[0.0005649239,0.000081341,0.41012174,0.000031878117,0.000014345213,0.000014989657,0.000005902144,0.0000012007994,0.58825845,0.00001647925,0.000841234,0.00004748466],"about_ca_topic_score_codex":0.0020453623,"about_ca_topic_score_gemma":0.00006105752,"teacher_disagreement_score":0.34201825,"about_ca_system_score_codex":0.000026345837,"about_ca_system_score_gemma":0.000019627756,"threshold_uncertainty_score":0.3463732},"labels":[],"label_agreement":null},{"id":"W2144970033","doi":"10.1128/iai.01249-09","title":"Probiotic Colonization of the Adherent Mucus Layer of HT29MTXE12 Cells Attenuates <i>Campylobacter jejuni</i> Virulence Properties","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lallemand (Canada)","funders":"Hospital for Sick Children; Science Foundation Ireland","keywords":"Microbiology; Biology; Campylobacter jejuni; Mucus; Lactobacillus rhamnosus; Probiotic; Internalization; Bacteria; Cell; Biochemistry","score_opus":0.021829991301962937,"score_gpt":0.20751584047221514,"score_spread":0.1856858491702522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144970033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988187,0.000046227018,0.0000018573334,0.000245942,0.0003918981,0.00020532729,0.000010052707,0.000018100362,0.00026191663],"genre_scores_gemma":[0.9996336,0.00009108237,0.000008201305,0.000115475676,0.000039948445,0.000006904561,0.0000058078595,7.6128714e-7,0.00009821369],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992759,0.00020344742,0.00022690071,0.00011082228,0.00006731577,0.00011558788],"domain_scores_gemma":[0.99947286,0.00010216812,0.0001807269,0.00008675647,0.00012920033,0.000028289349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025791852,0.00009012961,0.00015309466,0.000008899226,0.00014417393,0.000012712506,0.00012034059,0.00010694001,0.00014338746],"category_scores_gemma":[0.00009863833,0.000030460675,0.000060382434,0.00018725479,0.00022600305,0.000081672086,0.000085934415,0.00018847933,0.00000535931],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000145158365,0.00009406415,0.20922954,0.000013968045,0.000006546897,2.3456593e-8,0.00007626101,0.0000024758701,0.7870482,0.00005018774,0.00004435372,0.0034198496],"study_design_scores_gemma":[0.00006718197,0.00013997924,0.643929,0.000020799713,0.000010549064,0.000003438974,0.0000426096,0.000020414005,0.35382047,0.00010540836,0.0017837975,0.00005634615],"about_ca_topic_score_codex":0.0016886771,"about_ca_topic_score_gemma":0.0010592563,"teacher_disagreement_score":0.43469948,"about_ca_system_score_codex":0.000005694625,"about_ca_system_score_gemma":0.000007973023,"threshold_uncertainty_score":0.2552786},"labels":[],"label_agreement":null},{"id":"W2145028525","doi":"10.1128/iai.00685-10","title":"Interaction of <i>Candida albicans</i> Cell Wall Als3 Protein with <i>Streptococcus gordonii</i> SspB Adhesin Promotes Development of Mixed-Species Communities","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"Streptococcus gordonii; Candida albicans; Bacterial adhesin; Microbiology; Corpus albicans; Biofilm; Hypha; Mutant; Biology; Cell biology; Chemistry; Bacteria; Biochemistry; Virulence; Gene; Genetics","score_opus":0.015756316037548148,"score_gpt":0.24985445931227906,"score_spread":0.2340981432747309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145028525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947041,0.000044992015,0.00016662177,0.00005177858,0.00006941403,0.0005818686,0.0000070946353,0.000036383408,0.0043377266],"genre_scores_gemma":[0.99855775,0.000043264175,0.0006785855,0.00002819089,0.000015423846,0.000039709375,0.000032401687,0.00001246798,0.000592212],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990657,0.00008674648,0.00039537612,0.000119639466,0.00018586183,0.00014666753],"domain_scores_gemma":[0.99894404,0.00008652129,0.00024009081,0.00035845477,0.00030439263,0.00006650112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037661564,0.00016111723,0.00033604723,0.00009987436,0.00019038942,0.000017125683,0.00006280821,0.000099258235,0.00020358416],"category_scores_gemma":[0.00005413333,0.0001245412,0.00005979682,0.00015668945,0.00035921496,0.00016473474,0.000048779908,0.00050854293,0.0000026417592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045271555,0.00062144233,0.3624979,0.0004788765,0.000050822757,6.287897e-7,0.001912711,3.9964755e-7,0.6294885,0.000054685854,0.00003641747,0.004404863],"study_design_scores_gemma":[0.0006424437,0.00045509095,0.41016477,0.00021059798,0.00003113217,0.0000066633143,0.0013958046,0.0000070177266,0.5814412,0.000014869439,0.0055343355,0.00009604881],"about_ca_topic_score_codex":0.0022547666,"about_ca_topic_score_gemma":0.009050351,"teacher_disagreement_score":0.048047297,"about_ca_system_score_codex":0.000037244445,"about_ca_system_score_gemma":0.0001840986,"threshold_uncertainty_score":0.50786424},"labels":[],"label_agreement":null},{"id":"W2145145142","doi":"10.1128/iai.00980-07","title":"A Carcinoembryonic Antigen-Related Cell Adhesion Molecule 1 Homologue Plays a Pivotal Role in Nontypeable <i>Haemophilus influenzae</i> Colonization of the Chinchilla Nasopharynx via the Outer Membrane Protein P5-Homologous Adhesin","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; University of New Brunswick","funders":"National Institute on Deafness and Other Communication Disorders; National Institutes of Health","keywords":"Bacterial adhesin; Haemophilus influenzae; Microbiology; Biology; Pasteurellaceae; Bacterial outer membrane; Haemophilus; Antigen; Immunology; Bacteria; Virulence; Antibiotics; Escherichia coli; Gene","score_opus":0.006458858066692832,"score_gpt":0.21165509476419533,"score_spread":0.2051962366975025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145145142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641573,0.0012558908,0.000051919145,0.00009488376,0.0006343597,0.0007774544,0.000014305355,0.00005492428,0.0007005217],"genre_scores_gemma":[0.99934715,0.00014899786,0.000007677957,0.00008804605,0.000024478019,0.000027250284,0.000047241985,0.000019348094,0.00028978902],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99831545,0.00059447635,0.0005045042,0.00022877048,0.00003518813,0.00032163234],"domain_scores_gemma":[0.99909776,0.000106219595,0.0002786688,0.00038740825,0.000107190746,0.000022747723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006697408,0.00022605206,0.00029725092,0.00016972699,0.00059415126,0.000023123863,0.00017515081,0.0003952491,0.00014067662],"category_scores_gemma":[0.00007121407,0.00015181839,0.000111227564,0.00049646996,0.0002325254,0.0001506551,0.00017099836,0.0006589864,0.00003518327],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024362713,0.00034360046,0.06986018,0.00003044184,0.000050526673,0.000002302883,0.00064337254,0.000053115065,0.92816466,0.00011388137,0.000031737043,0.0004625749],"study_design_scores_gemma":[0.0014015485,0.00029578895,0.4796104,0.000040723786,0.000027122527,0.00020280418,0.00004984018,0.000030735904,0.51741886,0.000113372385,0.000667403,0.00014137736],"about_ca_topic_score_codex":0.008086658,"about_ca_topic_score_gemma":0.001933375,"teacher_disagreement_score":0.41074577,"about_ca_system_score_codex":0.00006127843,"about_ca_system_score_gemma":0.000061204584,"threshold_uncertainty_score":0.9985186},"labels":[],"label_agreement":null},{"id":"W2145356341","doi":"10.1128/iai.00670-15","title":"Interleukin-1 (IL-1) Signaling in Intestinal Stromal Cells Controls KC/CXCL1 Secretion, Which Correlates with Recruitment of IL-22-Secreting Neutrophils at Early Stages of Citrobacter rodentium Infection","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; Biology; CXCL1; Secretion; Immunology; Microbiology; Stromal cell; Immune system; Chemokine; Cancer research; Endocrinology","score_opus":0.030964483300469137,"score_gpt":0.24501587274967424,"score_spread":0.2140513894492051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145356341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972087,0.00017040769,0.0006478071,0.000013003149,0.0006879518,0.00050833484,0.00019659183,0.000059236678,0.0005079289],"genre_scores_gemma":[0.99938846,0.00012959183,0.000053381038,0.000015964733,0.0000331445,0.000034415218,0.00015764472,0.000020845126,0.00016654356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794114,0.0006697676,0.00069502724,0.00027720386,0.000083107305,0.0003337832],"domain_scores_gemma":[0.9983796,0.00020455444,0.000533923,0.00024380392,0.00058587146,0.00005223342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008626672,0.00027150652,0.0004987946,0.00030785185,0.00018066783,0.000029866673,0.0000942565,0.00026912492,0.00007390772],"category_scores_gemma":[0.00022862347,0.00024112775,0.00007619902,0.00034517347,0.00026796674,0.00030131434,0.00013137439,0.0006198245,0.00002078046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007383703,0.0001902857,0.39889762,0.000060064896,0.000111275906,0.0000015016986,0.0013568595,0.00016506248,0.5981266,0.00009866121,0.000026098402,0.0002276033],"study_design_scores_gemma":[0.0052056387,0.0042837444,0.47992668,0.000532424,0.0001519061,0.00016433965,0.0005048107,0.00005286004,0.5072703,0.00014323668,0.0013874522,0.00037667115],"about_ca_topic_score_codex":0.004960067,"about_ca_topic_score_gemma":0.0008279832,"teacher_disagreement_score":0.09085636,"about_ca_system_score_codex":0.00016181132,"about_ca_system_score_gemma":0.00011163496,"threshold_uncertainty_score":0.98329043},"labels":[],"label_agreement":null},{"id":"W2145440239","doi":"10.1128/iai.01339-12","title":"Altered Immune Response Differentially Enhances Susceptibility to Cryptococcus neoformans and Cryptococcus gattii Infection in Mice Expressing the HIV-1 Transgene","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Université de Montréal; University of British Columbia; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Biology; Cryptococcosis; Cryptococcus; Cryptococcus gattii; Immune system; Virology; Transgene; Microbiology; Immunology; Gene; Genetics","score_opus":0.020508139606175705,"score_gpt":0.2843066561106841,"score_spread":0.2637985165045084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145440239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948973,0.00024089006,0.0015011042,0.00096118916,0.00037285447,0.0014120239,0.0000063007187,0.00008936048,0.00051894656],"genre_scores_gemma":[0.998476,0.0006136741,0.00008936949,0.00018553743,0.00008579117,0.000319679,0.000009689967,0.000015526344,0.00020470696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984004,0.00045434033,0.0004411228,0.00027305871,0.00012821265,0.00030284698],"domain_scores_gemma":[0.9990644,0.00025572814,0.000089866975,0.00030673682,0.00016590065,0.00011737161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007071099,0.00023862527,0.00035091984,0.00023633962,0.0007158191,0.00014183088,0.000046934092,0.00011746027,0.00023739303],"category_scores_gemma":[0.0002501071,0.00017134212,0.000090019916,0.00035811262,0.00021480797,0.00035332513,0.000096728996,0.00048026314,0.00004482706],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094527117,0.00037686387,0.21019292,0.00012830993,0.00007379962,9.56465e-7,0.003629953,0.00002271644,0.7710461,0.000017550334,0.00023148752,0.013334079],"study_design_scores_gemma":[0.0012433922,0.00065252045,0.9710408,0.00014674023,0.000045495293,0.000032282376,0.0003344438,0.00020308295,0.024347028,0.00008992032,0.0016836915,0.00018062438],"about_ca_topic_score_codex":0.009055274,"about_ca_topic_score_gemma":0.0018702227,"teacher_disagreement_score":0.76084787,"about_ca_system_score_codex":0.00009775209,"about_ca_system_score_gemma":0.000039191913,"threshold_uncertainty_score":0.9975435},"labels":[],"label_agreement":null},{"id":"W2145658355","doi":"10.1128/iai.00212-10","title":"A Decade of <i>Burkholderia cenocepacia</i> Virulence Determinant Research","year":2010,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Burkholderia cenocepacia; Burkholderia cepacia complex; Virulence; Biology; Microbiology; Antibiotics; Pneumonia; Burkholderia; Immunology; Antibiotic resistance; Virology; Bacteria; Medicine; Genetics; Gene","score_opus":0.12563283268764788,"score_gpt":0.47228625644510946,"score_spread":0.34665342375746155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145658355","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005820023,0.99109954,0.00002939897,0.0000136164235,0.00022724496,0.000954867,0.00003277143,0.000037027305,0.0017854928],"genre_scores_gemma":[0.0013647825,0.9977608,0.000288149,0.0000076262236,0.0001029223,0.00009026633,0.000036213438,0.00003412828,0.00031516442],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977438,0.0005502339,0.00052867393,0.00030000988,0.00049088884,0.0003863827],"domain_scores_gemma":[0.9977687,0.000739814,0.00020296703,0.00065841665,0.00041872563,0.0002113565],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015120117,0.0002468159,0.0011692363,0.000549571,0.00023718072,0.000040932016,0.0001549732,0.00039769802,0.0001392056],"category_scores_gemma":[0.0022098038,0.00018703677,0.0002284991,0.0007223953,0.00065199943,0.00012048171,0.00025778566,0.0024767313,0.000047548987],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003838472,0.00014080005,0.00009137023,0.01478858,0.000037834172,0.0000085271595,0.000046843455,9.337327e-9,0.0019150305,0.000028111299,0.00013910234,0.98276544],"study_design_scores_gemma":[0.00028074958,0.0005245329,0.0008899031,0.011425153,0.00014342117,0.00041708036,0.0000151261065,0.0000035758142,0.0007591497,0.00006307026,0.9853305,0.00014769917],"about_ca_topic_score_codex":0.0008702273,"about_ca_topic_score_gemma":0.00009222201,"teacher_disagreement_score":0.98519146,"about_ca_system_score_codex":0.00010144207,"about_ca_system_score_gemma":0.0005100732,"threshold_uncertainty_score":0.9998246},"labels":[],"label_agreement":null},{"id":"W2145663614","doi":"10.1128/iai.73.2.695-702.2005","title":"Bioluminescence Imaging of <i>Toxoplasma gondii</i> Infection in Living Mice Reveals Dramatic Differences between Strains","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Toxoplasma gondii; Luciferase; Bioluminescence imaging; Biology; Bioluminescence; Toxoplasmosis; Virulence; In vivo; clone (Java method); Microbiology; Virology; Molecular biology; Immunology; Antibody; Cell culture; Biochemistry; Transfection; Gene; Genetics","score_opus":0.021467721423405372,"score_gpt":0.2803619880139456,"score_spread":0.2588942665905402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145663614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776584,0.0005696745,0.00014419352,0.000134965,0.00017793474,0.00022883638,0.000018375022,0.00006884862,0.0008913054],"genre_scores_gemma":[0.99867594,0.00091712683,0.000041657,0.000026614383,0.00003139554,0.000021005992,0.000014677304,0.000009261287,0.0002623281],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99845856,0.0005353917,0.00042588916,0.00020752127,0.000047897,0.00032472645],"domain_scores_gemma":[0.99897015,0.00055257336,0.00018288489,0.00017905846,0.000089521054,0.000025821846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006733354,0.00017974907,0.00035742743,0.00034198447,0.00028699407,0.000027674621,0.00010040031,0.0001395228,0.00009134797],"category_scores_gemma":[0.00063822174,0.00016661765,0.000059126807,0.00034605112,0.0003990764,0.00032303762,0.00016564422,0.00053305284,0.000036936934],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000097067805,0.00012343777,0.8754546,0.000082175844,0.000049594793,2.781746e-7,0.0009956645,0.0000025139166,0.11039057,0.00004659501,0.000058568217,0.012786316],"study_design_scores_gemma":[0.00046400688,0.00010698479,0.9780071,0.00024220522,0.000020745654,0.000022203818,0.00018853936,0.000030292666,0.02026345,0.000063883024,0.0004358912,0.00015469626],"about_ca_topic_score_codex":0.0036729716,"about_ca_topic_score_gemma":0.001709157,"teacher_disagreement_score":0.10255251,"about_ca_system_score_codex":0.00007298805,"about_ca_system_score_gemma":0.00003418992,"threshold_uncertainty_score":0.67944705},"labels":[],"label_agreement":null},{"id":"W2145704005","doi":"10.1128/iai.00417-12","title":"Susceptibility to Progressive Cryptococcus neoformans Pulmonary Infection Is Regulated by Loci on Mouse Chromosomes 1 and 9","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Cryptococcus neoformans; Immunology; Cryptococcosis; Allele; Phenotype; Genotype; Immune system; Microbiology; Genetics; Gene","score_opus":0.018704572408157757,"score_gpt":0.29222959667003406,"score_spread":0.2735250242618763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145704005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99572164,0.0004382506,0.00004522282,0.0003561299,0.0002084795,0.0006790885,0.00001713318,0.00015439685,0.0023796621],"genre_scores_gemma":[0.9979906,0.0005295591,0.000021564392,0.00048239346,0.000109590736,0.00008125186,0.000038220653,0.000015461641,0.0007313688],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910563,0.00009093026,0.00021090158,0.00019633882,0.000118151,0.00027803145],"domain_scores_gemma":[0.9993145,0.00004468361,0.00006785889,0.00022777909,0.00013934127,0.00020585177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026675905,0.00019506655,0.00024837544,0.00014679082,0.0005559319,0.000037856487,0.000016510952,0.00013370792,0.00019329446],"category_scores_gemma":[0.00010808213,0.00016116882,0.000059265327,0.00027865096,0.00013929675,0.00028856748,0.000073903844,0.00032600437,0.0000418413],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002654289,0.0011325064,0.9222118,0.00015494501,0.00013555234,0.0000013500662,0.0014153378,0.0000023720083,0.047144957,0.000057992034,0.008255504,0.019222215],"study_design_scores_gemma":[0.0005823185,0.0012229346,0.9478248,0.000060511647,0.000063256,0.00010308486,0.00011515361,0.000058599497,0.027271517,0.000027539967,0.022477482,0.00019284805],"about_ca_topic_score_codex":0.0015270676,"about_ca_topic_score_gemma":0.000061841056,"teacher_disagreement_score":0.025612911,"about_ca_system_score_codex":0.000116013296,"about_ca_system_score_gemma":0.000014652062,"threshold_uncertainty_score":0.65722734},"labels":[],"label_agreement":null},{"id":"W2145985597","doi":"10.1128/iai.00222-07","title":"Neisserial Outer Membrane Vesicles Bind the Coinhibitory Receptor Carcinoembryonic Antigen-Related Cellular Adhesion Molecule 1 and Suppress CD4 <sup>+</sup> T Lymphocyte Function","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Sanofi Pasteur; Sanofi","keywords":"Biology; Bacterial outer membrane; Bacterial adhesin; Neisseria meningitidis; Neisseria; Microbiology; Antigen; Vesicle; Membrane protein; Cell biology; Bacteria; Immunology; Biochemistry; Membrane; Gene; Escherichia coli","score_opus":0.009952049038308446,"score_gpt":0.21632585651475433,"score_spread":0.20637380747644588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145985597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946753,0.0020631019,0.00010061975,0.00008769937,0.0023194258,0.00031138206,0.000012925351,0.00012802392,0.00030153734],"genre_scores_gemma":[0.998122,0.0009358196,0.0000049257355,0.00006791984,0.0001880004,0.000011459545,0.00013781126,0.000023868739,0.0005082231],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985481,0.0004346494,0.00038083384,0.00028253783,0.000028518782,0.00032539357],"domain_scores_gemma":[0.99926054,0.00014467178,0.00014087222,0.00030357268,0.00010540513,0.00004493729],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000658193,0.00024843134,0.00025504755,0.0001652052,0.0010127658,0.00007814321,0.000076076285,0.00039747864,0.0005949484],"category_scores_gemma":[0.000051890835,0.00019084163,0.00009155624,0.00022216409,0.00023193676,0.00026442253,0.0001100215,0.00041746048,0.00011034694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052439474,0.00009739895,0.0058969855,0.000021921776,0.00012647822,7.7334033e-7,0.00047828694,0.000010385195,0.9875371,0.00011237272,0.00040338113,0.0047905254],"study_design_scores_gemma":[0.002919432,0.0005089887,0.16102096,0.000042745243,0.00010717975,0.00015263417,0.00042193936,0.000047571924,0.775635,0.000046552774,0.05878619,0.00031079882],"about_ca_topic_score_codex":0.0021617773,"about_ca_topic_score_gemma":0.00009077056,"teacher_disagreement_score":0.2119021,"about_ca_system_score_codex":0.000052900436,"about_ca_system_score_gemma":0.000039995964,"threshold_uncertainty_score":0.7789478},"labels":[],"label_agreement":null},{"id":"W2146387814","doi":"10.1128/iai.01374-09","title":"<i>Chlamydia muridarum</i>T-Cell Antigens Formulated with the Adjuvant DDA/TDB Induce Immunity against Infection That Correlates with a High Frequency of Gamma Interferon (IFN-γ)/Tumor Necrosis Factor Alpha and IFN-γ/Interleukin-17 Double-Positive CD4<sup>+</sup>T Cells","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Adjuvant; Chlamydia; Antigen; CpG Oligodeoxynucleotide; Immunity; Major histocompatibility complex; Immunology; Interferon gamma; Immune system; Virology; T cell; Antibody; Microbiology; Gene","score_opus":0.012992339884714176,"score_gpt":0.23591754223945358,"score_spread":0.2229252023547394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146387814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956266,0.00021566915,0.00023349527,0.00010825553,0.0005103406,0.0013618505,0.00010785805,0.00016476185,0.0016711174],"genre_scores_gemma":[0.9986302,0.00040232515,0.000038841394,0.00006957811,0.000038582275,0.0000941739,0.00015335312,0.00006250313,0.0005104217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99732286,0.00074715656,0.00051970594,0.0006316907,0.0001514344,0.00062713766],"domain_scores_gemma":[0.9972767,0.00046290236,0.0005076398,0.00093084434,0.000725292,0.0000965973],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007724638,0.00058968976,0.00065008755,0.00047533787,0.0012635702,0.00016610904,0.00025854152,0.00048028998,0.00032269288],"category_scores_gemma":[0.000085159874,0.00040228822,0.00013696015,0.0006163195,0.0014816285,0.00083708554,0.0002613333,0.0031398688,0.000044620607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018109602,0.0008184864,0.2086877,0.00008272461,0.00054524414,0.0000053380677,0.0036225284,0.00007685172,0.78089947,0.000047206107,0.000091775495,0.0033117176],"study_design_scores_gemma":[0.0031115692,0.001808643,0.42149746,0.00012463676,0.00012977055,0.00037699827,0.00041696455,0.00002777752,0.5716441,0.000022922059,0.0004492011,0.00038995926],"about_ca_topic_score_codex":0.03019133,"about_ca_topic_score_gemma":0.0036950167,"teacher_disagreement_score":0.21280977,"about_ca_system_score_codex":0.00016846368,"about_ca_system_score_gemma":0.0002535378,"threshold_uncertainty_score":0.9998429},"labels":[],"label_agreement":null},{"id":"W2146681103","doi":"10.1128/iai.01029-07","title":"The Extracellular Signal-Regulated Kinase/Mitogen-Activated Protein Kinase Pathway Induces the Inflammatory Factor Interleukin-8 following<i>Chlamydia trachomatis</i>Infection","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive Physiology in Livestock","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"MAPK/ERK pathway; Biology; Chlamydia trachomatis; Signal transduction; Protein kinase A; Chemokine; Kinase; p38 mitogen-activated protein kinases; Proinflammatory cytokine; Mitogen-activated protein kinase; Inflammation; Immunology; Cell biology","score_opus":0.01860877900232586,"score_gpt":0.22890957181506186,"score_spread":0.210300792812736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146681103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99738127,0.00040728637,0.000027506223,0.0001911519,0.0007359434,0.00089274626,0.000006721915,0.00019151633,0.00016588221],"genre_scores_gemma":[0.9992481,0.000040764546,0.0000053453755,0.0000349225,0.0002932749,0.00007657704,0.000025348192,0.0000042586357,0.00027143626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979056,0.00072063826,0.00041508794,0.00036454154,0.00021275501,0.0003813383],"domain_scores_gemma":[0.9987541,0.00049298094,0.0002891569,0.00022183072,0.00014778633,0.000094174764],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0011771409,0.00028150863,0.00020747937,0.000032605116,0.0018269812,0.0001768758,0.00021398396,0.00022629971,0.00010613827],"category_scores_gemma":[0.00026948322,0.00010102582,0.00017888092,0.00047333312,0.00034109945,0.00040812005,0.000110702495,0.0006786437,0.000023206194],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000082779916,0.00009756537,0.011032007,0.0000056219155,0.000066826586,0.0000021645803,0.0003126633,0.000003341614,0.9155152,0.00012295284,0.000023647779,0.072735265],"study_design_scores_gemma":[0.00013458217,0.00025527106,0.6237835,0.000022910892,0.000011399562,0.000008857342,0.0001581402,0.000007772279,0.3705796,0.00046502924,0.004413613,0.00015927898],"about_ca_topic_score_codex":0.0019527765,"about_ca_topic_score_gemma":0.0005431616,"teacher_disagreement_score":0.61275154,"about_ca_system_score_codex":0.00008163678,"about_ca_system_score_gemma":0.000018865336,"threshold_uncertainty_score":0.9994725},"labels":[],"label_agreement":null},{"id":"W2146951948","doi":"10.1128/iai.06394-11","title":"YghG (GspS <sub>β</sub> ) Is a Novel Pilot Protein Required for Localization of the GspS <sub>β</sub> Type II Secretion System Secretin of Enterotoxigenic Escherichia coli","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Enterotoxigenic Escherichia coli; Biology; Secretin; Secretion; Bacterial outer membrane; Microbiology; Operon; Enterotoxin; Escherichia coli; Pathogenicity island; Genetics; Biochemistry; Gene","score_opus":0.023065306952102006,"score_gpt":0.2621676885622674,"score_spread":0.2391023816101654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146951948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98177034,0.00042697412,0.01595854,0.000035137575,0.00021932319,0.0014153097,0.00004623545,0.000022014554,0.00010609979],"genre_scores_gemma":[0.9990758,0.00027017336,0.00006543747,0.000060456303,0.00010766568,0.00030320106,0.00006290463,0.0000270016,0.000027403194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986382,0.00029534104,0.00037772587,0.0002047092,0.00019935261,0.00028465668],"domain_scores_gemma":[0.9986886,0.000028665865,0.000324749,0.0003799982,0.0005027343,0.00007529213],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073244446,0.00019410696,0.0002462406,0.0000604418,0.00038471897,0.000016360116,0.00012578108,0.0001748506,0.0000034962104],"category_scores_gemma":[0.00045944026,0.00016404028,0.00011781833,0.000325204,0.000208339,0.000024338176,0.00029388568,0.00016633334,0.0000013717043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040910186,0.00029253121,0.006559601,0.00045508618,0.00012821365,2.0972893e-8,0.00020638747,0.000013616969,0.99129635,0.00012847228,0.00010968002,0.00040092057],"study_design_scores_gemma":[0.00090944767,0.0012870779,0.019269759,0.00014741355,0.000047647543,0.0000036272627,0.00012266885,0.00084364915,0.9757711,0.000013268902,0.0014288899,0.00015542343],"about_ca_topic_score_codex":0.00016260851,"about_ca_topic_score_gemma":0.00008835479,"teacher_disagreement_score":0.017305393,"about_ca_system_score_codex":0.00006065241,"about_ca_system_score_gemma":0.000106096995,"threshold_uncertainty_score":0.66893685},"labels":[],"label_agreement":null},{"id":"W2146955021","doi":"10.1128/iai.00277-07","title":"<i>Leishmania major</i>Abrogates Gamma Interferon-Induced Gene Expression in Human Macrophages from a Global Perspective","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Coastal Health Research Institute; University of British Columbia; Vancouver Coastal Health","funders":"","keywords":"Biology; Interferon gamma; Leishmania; Gene expression; Virology; Gene; Interferon; Perspective (graphical); Leishmania major; Kinetoplastida; Microbiology; Protozoal disease; Immunology; Cytokine; Genetics; Parasite hosting; Malaria","score_opus":0.030997549444321256,"score_gpt":0.3486656636749335,"score_spread":0.31766811423061225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146955021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99102074,0.00046652238,0.000092726565,0.00019694977,0.00020791503,0.00037635703,0.0000118746875,0.000090162386,0.0075367475],"genre_scores_gemma":[0.9992687,0.00014750456,0.00017685944,0.00010282755,0.000114912094,0.00001389734,0.000011611855,0.000015844764,0.0001478591],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862504,0.00017074565,0.00029346082,0.00031728734,0.00025482537,0.00033865354],"domain_scores_gemma":[0.99917996,0.00006385399,0.000084748615,0.00032187253,0.00020706379,0.00014250189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037157003,0.00020128525,0.00032099843,0.00016594793,0.00029107407,0.00004632391,0.00008559146,0.00014729235,0.00012494443],"category_scores_gemma":[0.00028762227,0.00018069234,0.000089340516,0.00036139123,0.00013358933,0.0001944319,0.00030252978,0.0005308039,0.000016963504],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028006724,0.0002995326,0.42554882,0.00002210011,0.00005144818,0.000030587085,0.0008256344,2.3305591e-7,0.5715019,0.00005122603,0.00011487111,0.0012735431],"study_design_scores_gemma":[0.0016371965,0.00031048726,0.6707218,0.00015357495,0.000017096381,0.000026487038,0.00096961285,0.0000034028012,0.3255593,0.000382479,0.00011308981,0.000105464824],"about_ca_topic_score_codex":0.01924914,"about_ca_topic_score_gemma":0.00473592,"teacher_disagreement_score":0.24594265,"about_ca_system_score_codex":0.00074859307,"about_ca_system_score_gemma":0.00004060451,"threshold_uncertainty_score":0.98728174},"labels":[],"label_agreement":null},{"id":"W2147016467","doi":"10.1128/iai.70.4.1783-1790.2002","title":"<i>Pseudomonas aeruginosa</i> Quorum-Sensing Systems May Control Virulence Factor Expression in the Lungs of Patients with Cystic Fibrosis","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":295,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; University of Calgary; Foothills Medical Centre","funders":"University of Calgary; Cystic Fibrosis Foundation","keywords":"Quorum sensing; Pseudomonas aeruginosa; Autoinducer; Virulence; Cystic fibrosis; Biology; Homoserine; Microbiology; Virulence factor; Sputum; Lung; Immunology; Gene; Bacteria; Internal medicine; Pathology; Medicine; Genetics","score_opus":0.007397297435297047,"score_gpt":0.20039750180549235,"score_spread":0.1930002043701953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147016467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990092,0.00020330437,0.00023380766,0.000024600606,0.00014392898,0.00020475735,0.000027322025,0.0000064287215,0.00014664445],"genre_scores_gemma":[0.9996926,0.00009729057,0.000051964667,0.000074740856,0.000035700483,0.0000023134824,0.000023536732,0.0000075549724,0.000014307374],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992536,0.00021620055,0.00017496989,0.00013399834,0.000088446344,0.00013281737],"domain_scores_gemma":[0.99955416,0.000035978446,0.000112183334,0.00020151238,0.000069511196,0.000026660759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118133554,0.000112263646,0.0001317714,0.00003345231,0.00012212843,0.000036891997,0.000048372338,0.00009518712,0.000006731984],"category_scores_gemma":[0.000044129672,0.000074589625,0.00003050287,0.00007806499,0.00007747802,0.000012014428,0.000027597986,0.000107066946,0.0000012091435],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121217774,0.00008117655,0.059587944,0.000029300389,0.000011297356,3.9953053e-7,0.00014123491,0.000017268298,0.9386137,0.0000039672823,0.0000655254,0.001326982],"study_design_scores_gemma":[0.0028212613,0.0009390537,0.6841113,0.000263139,0.000035844052,0.000025390711,0.0001807322,0.00040028576,0.30473122,0.0000020117666,0.006148213,0.00034155356],"about_ca_topic_score_codex":0.0004754861,"about_ca_topic_score_gemma":0.000033933135,"teacher_disagreement_score":0.63388246,"about_ca_system_score_codex":0.00000814373,"about_ca_system_score_gemma":0.0000061043656,"threshold_uncertainty_score":0.30416766},"labels":[],"label_agreement":null},{"id":"W2147095260","doi":"10.1128/iai.71.5.2911-2915.2003","title":"<i>fhuA</i>of<i>Actinobacillus pleuropneumoniae</i>Encodes a Ferrichrome Receptor but Is Not Regulated by Iron","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"","keywords":"Ferrichrome; Actinobacillus pleuropneumoniae; Biology; Microbiology; Actinobacillus; Bacterial outer membrane; Biochemistry; Bacteria; Gene; Genetics; Escherichia coli; Serotype","score_opus":0.01634664956934703,"score_gpt":0.25415928844083735,"score_spread":0.23781263887149032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147095260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99449366,0.0012809255,0.00010252832,0.00008861296,0.00044859553,0.00022421716,0.00016914034,0.00009291025,0.003099403],"genre_scores_gemma":[0.99429667,0.0013955522,0.000014873397,0.0001644073,0.000009319822,0.000015032487,0.000095138275,0.000018607827,0.0039904173],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983605,0.00064213056,0.00033784664,0.0002721493,0.00005038166,0.0003370005],"domain_scores_gemma":[0.9991675,0.00011818485,0.00013639605,0.0003434043,0.00017243587,0.00006205583],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00036992002,0.00020723262,0.00030172738,0.00016761293,0.00050576753,0.00003731332,0.00008432368,0.00025066777,0.0026611395],"category_scores_gemma":[0.00019973904,0.00019489939,0.00011519849,0.00035533844,0.00033442109,0.00016645223,0.00006973709,0.00045771545,0.00030480474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001069288,0.0003597176,0.0046843723,0.000046755864,0.00008892437,5.539764e-7,0.0001548672,0.0000017235541,0.98386115,0.00021038986,0.00850986,0.0019747731],"study_design_scores_gemma":[0.0013587549,0.00033989982,0.008203388,0.000032491494,0.000043580483,0.0001362407,0.00011297004,0.0000032528026,0.83317846,0.000049924634,0.15628056,0.00026048848],"about_ca_topic_score_codex":0.0030246929,"about_ca_topic_score_gemma":0.00003364143,"teacher_disagreement_score":0.15068269,"about_ca_system_score_codex":0.000056952154,"about_ca_system_score_gemma":0.000077671866,"threshold_uncertainty_score":0.99825054},"labels":[],"label_agreement":null},{"id":"W2147269348","doi":"10.1128/iai.73.5.3172-3177.2005","title":"Interleukin-15 Enhances Innate and Adaptive Immune Responses to Blood-Stage Malaria Infection in Mice","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Biology; Plasmodium chabaudi; Immunology; Malaria; Acquired immune system; Innate immune system; Immune system; Immunity; Parasitemia; Cytokine; Antibody; Plasmodium falciparum","score_opus":0.014426441955641958,"score_gpt":0.25850844063994827,"score_spread":0.2440819986843063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147269348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99401224,0.0011734805,0.0003118585,0.0002937357,0.0015980044,0.0002944914,0.0000036273466,0.00010872257,0.0022038454],"genre_scores_gemma":[0.98716027,0.0014404935,0.000039865,0.00035260996,0.00003803179,0.00004381123,0.000029292964,0.000015691088,0.010879939],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984184,0.000571876,0.00042019557,0.00029086598,0.00003327045,0.00026540668],"domain_scores_gemma":[0.99936515,0.00016174154,0.00014356118,0.0001902065,0.000106338426,0.000032972923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000564627,0.0002254599,0.0002671157,0.00050837797,0.00033296618,0.000059127065,0.00006142807,0.00024385766,0.00079064944],"category_scores_gemma":[0.0002088622,0.0002243679,0.00005846417,0.00029695913,0.00013625831,0.000552399,0.00012972127,0.00068143447,0.000292763],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00158353,0.00035306913,0.021399999,0.000022906714,0.00012934186,0.0000014302763,0.002126908,0.000021241534,0.9598299,0.00042445198,0.00039934902,0.013707844],"study_design_scores_gemma":[0.0015948553,0.0008267294,0.51045716,0.000094785835,0.000037524525,0.00012852027,0.0003815573,0.000044836564,0.38562083,0.00002042862,0.1005072,0.00028560322],"about_ca_topic_score_codex":0.008036576,"about_ca_topic_score_gemma":0.002158343,"teacher_disagreement_score":0.5742091,"about_ca_system_score_codex":0.00009007637,"about_ca_system_score_gemma":0.000028970207,"threshold_uncertainty_score":0.998569},"labels":[],"label_agreement":null},{"id":"W2147421609","doi":"10.1128/iai.00067-06","title":"Adherent and Invasive<i>Escherichia coli</i>Is Associated with Granulomatous Colitis in Boxer Dogs","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":278,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Microbiology; Escherichia coli; Virulence; Serotype; Inflammatory bowel disease; Intestinal mucosa; Genotype; Gene; Genetics; Disease; Pathology","score_opus":0.013754219120098828,"score_gpt":0.25249053942547434,"score_spread":0.2387363203053755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147421609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951629,0.00018961795,0.0000054980105,0.00025097097,0.000032775137,0.00034620168,0.0000152231005,0.000044831413,0.003951954],"genre_scores_gemma":[0.9983914,0.00075553876,0.000017164088,0.00044639996,0.000023827602,0.000054286764,0.000050793147,0.000010964736,0.00024964573],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992221,0.00012907007,0.000155921,0.00013900956,0.0001385481,0.00021536298],"domain_scores_gemma":[0.99947804,0.00013919057,0.000048006077,0.00011906377,0.000098354874,0.00011733696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019021575,0.00011439077,0.00021941931,0.00011208643,0.00011919048,0.000050862687,0.00001918743,0.00008738364,0.00016937908],"category_scores_gemma":[0.000165691,0.00009461858,0.000024971907,0.00026202606,0.00010001336,0.00010878709,0.000031901996,0.0002609965,0.000007559978],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022587192,0.0003625033,0.9918452,0.00007002647,0.000032325166,0.000028152532,0.00013941465,2.0638655e-7,0.0049173296,0.000032888634,0.001582678,0.000763415],"study_design_scores_gemma":[0.002706878,0.0005756023,0.99063575,0.0001828962,0.000027508799,0.000038349746,0.000037913913,0.00001785648,0.004074,0.00010443775,0.0014936983,0.00010509025],"about_ca_topic_score_codex":0.027944654,"about_ca_topic_score_gemma":0.009872905,"teacher_disagreement_score":0.018071748,"about_ca_system_score_codex":0.000070602706,"about_ca_system_score_gemma":0.000073512965,"threshold_uncertainty_score":0.9785283},"labels":[],"label_agreement":null},{"id":"W2147446217","doi":"10.1128/iai.69.7.4580-4589.2001","title":"Decreased Apoptosis in the Ileum and Ileal Peyer's Patches: a Feature after Infection with Rabbit Enteropathogenic <i>Escherichia coli</i> O103","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"","keywords":"Biology; Enteropathogenic Escherichia coli; Microbiology; Ileum; Escherichia coli; Enterobacteriaceae; Peyer's patch; Immune system; Immunology","score_opus":0.007963605072844455,"score_gpt":0.23956785847552658,"score_spread":0.23160425340268212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147446217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805444,0.00060648227,0.00019775637,0.0002228888,0.00004785995,0.00030797653,0.000005728584,0.000016271817,0.0005405904],"genre_scores_gemma":[0.99439126,0.0045563485,0.00005582981,0.00057786325,0.000070753675,0.00019611916,0.000024912939,0.000013907466,0.00011300945],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99897,0.0003375404,0.00011651917,0.00023085109,0.00011749546,0.00022765111],"domain_scores_gemma":[0.9995396,0.000032432265,0.00005007019,0.00023563429,0.0000776563,0.00006458774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040655743,0.00017597443,0.00014046615,0.000056929828,0.00023195552,0.000069735856,0.000059722723,0.00012831009,0.000010611257],"category_scores_gemma":[0.000093685165,0.00012442403,0.000045563855,0.00024189777,0.0001600971,0.000016968308,0.00010024017,0.00033588777,0.0000016091193],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000762186,0.00024045366,0.80636734,0.000047566835,0.00008273334,0.000004707022,0.0005065988,0.0000043898717,0.1898916,0.0000066893776,0.0002678568,0.0018178484],"study_design_scores_gemma":[0.0011470775,0.00077058404,0.9675961,0.000036361747,0.000033946108,0.00006315358,0.0002596652,0.000037212205,0.005198614,0.00001898915,0.02464159,0.00019671839],"about_ca_topic_score_codex":0.001565371,"about_ca_topic_score_gemma":0.0036729018,"teacher_disagreement_score":0.184693,"about_ca_system_score_codex":0.000021884529,"about_ca_system_score_gemma":0.000039619175,"threshold_uncertainty_score":0.50738645},"labels":[],"label_agreement":null},{"id":"W2147446676","doi":"10.1128/iai.01546-08","title":"Restriction of <i>L</i> <i>egionella pneumophila</i> Replication in Macrophages Requires Concerted Action of the Transcriptional Regulators Irf1 and Irf8 and Nod-Like Receptors Naip5 and Nlrc4","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McGill University","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Legionella pneumophila; Biology; NLRC4; Microbiology; IRF1; Permissiveness; Cell biology; Inflammasome; Virology; Receptor; Viral replication; Gene; Genetics; Transcription factor; Virus; Caspase 1; Bacteria","score_opus":0.019378915454679454,"score_gpt":0.2797223527596952,"score_spread":0.26034343730501575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147446676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99814785,0.00095788273,0.000036726728,0.00041453695,0.00010227751,0.00017819877,0.00000540033,0.000006048182,0.00015108286],"genre_scores_gemma":[0.9902995,0.009467542,0.000014445035,0.000084983614,0.00002951478,0.00000503008,0.000019972267,0.000005321766,0.00007367436],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992302,0.00015831472,0.00021119398,0.00021122265,0.00009549325,0.00009355121],"domain_scores_gemma":[0.99954516,0.000022013328,0.000111639056,0.00020633829,0.00007676571,0.000038057133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025802528,0.00009445777,0.00011925543,0.00007361307,0.00014051917,0.000015316167,0.000039557803,0.00013035319,0.0000016396485],"category_scores_gemma":[0.00006541726,0.00007854108,0.000028133978,0.00017624922,0.00026767212,0.000023374774,0.000036203677,0.0001341318,5.1360665e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001525312,0.000057971643,0.040018752,0.00003919536,0.000011538907,1.0644733e-7,0.00012471814,0.0000051855,0.9501177,0.00014066763,0.00011947084,0.009212143],"study_design_scores_gemma":[0.00077092304,0.00033585966,0.73504156,0.00004336847,0.00001476928,0.000035465375,0.000116618845,0.00007469827,0.26035583,0.00034515085,0.0027717568,0.000093993054],"about_ca_topic_score_codex":0.000537939,"about_ca_topic_score_gemma":0.000075704455,"teacher_disagreement_score":0.6950228,"about_ca_system_score_codex":0.000011993545,"about_ca_system_score_gemma":0.0000256105,"threshold_uncertainty_score":0.32028124},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W2147549735","doi":"10.1128/iai.00359-15","title":"Evolution of the Immune Response to Chronic Airway Colonization with Aspergillus fumigatus Hyphae","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Christie (Canada); McGill University Health Centre; McGill University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Aspergillus fumigatus; Biology; Immune system; Microbiology; Immunology; Proinflammatory cytokine; Chemokine; Lung; Cytokine; Inflammation; Medicine","score_opus":0.014746727876513717,"score_gpt":0.26264492948956564,"score_spread":0.24789820161305193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147549735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966502,0.0004697263,0.00094723975,0.00041613143,0.00014056954,0.00033556117,0.0000027694612,0.000029504292,0.0010082556],"genre_scores_gemma":[0.9990983,0.000029715233,0.000031247622,0.000051479365,0.000028242786,0.0000075138546,0.0000036478207,0.0000070930982,0.00074274593],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99922425,0.00022408232,0.00016086921,0.00010450057,0.00018107673,0.00010522492],"domain_scores_gemma":[0.99922097,0.000041705684,0.00006805652,0.00031495493,0.00027295123,0.00008138757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063199474,0.00007840753,0.00014901017,0.00005906846,0.00014123647,0.000008849021,0.00003922496,0.00006296265,0.000026793468],"category_scores_gemma":[0.00048183525,0.000050739854,0.00003774911,0.00034928232,0.000138571,0.00008560868,0.000045376655,0.00016397315,0.000010103851],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009899412,0.00031569292,0.79402244,0.000105616,0.00005423729,0.0000018385523,0.0011542854,0.00023040983,0.19016093,0.00038193553,0.00025652465,0.0034167084],"study_design_scores_gemma":[0.0011134937,0.0013861802,0.9764808,0.00008908558,0.000035333745,0.000022950024,0.00020851396,0.00010589109,0.017929206,0.00003076344,0.0025384813,0.00005929784],"about_ca_topic_score_codex":0.0010323543,"about_ca_topic_score_gemma":0.00057935365,"teacher_disagreement_score":0.18245839,"about_ca_system_score_codex":0.0003989676,"about_ca_system_score_gemma":0.00036818194,"threshold_uncertainty_score":0.20691113},"labels":[],"label_agreement":null},{"id":"W2147582257","doi":"10.1128/iai.72.3.1402-1408.2004","title":"Survival of <i>Aspergillus fumigatus</i> in Serum Involves Removal of Iron from Transferrin: the Role of Siderophores","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Chromium effects and bioremediation","field":"Environmental Science","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Aspergillus fumigatus; Siderophore; Transferrin; Ferrichrome; Microbiology; Biology; Transferrin receptor; Ferritin; Biochemistry; Bacterial outer membrane","score_opus":0.005933043109639015,"score_gpt":0.19571010632772007,"score_spread":0.18977706321808105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147582257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986695,0.00014983813,0.00001890368,0.000041824296,0.00007266566,0.00010353487,0.0000146921875,0.0000050083036,0.0009240097],"genre_scores_gemma":[0.99966973,0.00026457992,0.000030140176,0.000011589201,0.000010337315,0.0000013932469,0.0000060167627,0.0000033209972,0.00000288579],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994423,0.00009919725,0.00018926403,0.00007709728,0.00012409946,0.00006804478],"domain_scores_gemma":[0.9997203,0.000060201804,0.000069432615,0.00012536085,0.0000071891636,0.00001752598],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002200187,0.0000637098,0.00012619587,0.000023962672,0.00003910595,0.0000035755825,0.00005677121,0.00005094659,0.000090083704],"category_scores_gemma":[0.000024925954,0.000045076624,0.00003757791,0.00015123906,0.00022336959,0.000087863875,0.00004260961,0.00009648115,0.0000013931867],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004548135,0.00013067121,0.24577987,0.000013851864,0.000005824171,3.1534123e-7,0.0013695196,0.0006416799,0.7437444,0.000078298384,9.820247e-7,0.008189133],"study_design_scores_gemma":[0.00040566895,0.00010315213,0.689616,0.000017049513,0.0000066596626,0.0000011371734,0.00022146103,0.000058449485,0.30861712,0.0007919137,0.00012468148,0.00003665997],"about_ca_topic_score_codex":0.056952026,"about_ca_topic_score_gemma":0.010800414,"teacher_disagreement_score":0.44383618,"about_ca_system_score_codex":0.00003582253,"about_ca_system_score_gemma":0.00000955978,"threshold_uncertainty_score":0.9493278},"labels":[],"label_agreement":null},{"id":"W2147867481","doi":"10.1128/iai.74.1.108-117.2006","title":"The <i>Brucella suis</i> Type IV Secretion System Assembles in the Cell Envelope of the Heterologous Host <i>Agrobacterium tumefaciens</i> and Increases IncQ Plasmid pLS1 Recipient Competence","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Deutscher Akademischer Austauschdienst; Canadian Institutes of Health Research; European Commission; Ontario Innovation Trust","keywords":"Biology; Heterologous; Agrobacterium tumefaciens; Plasmid; Agrobacterium; Microbiology; Secretion; Brucella; Ti plasmid; Rhizobiaceae; Virology; Bacteria; Transformation (genetics); Genetics; Brucellosis; Symbiosis; Gene","score_opus":0.030455446175151,"score_gpt":0.2743204429378197,"score_spread":0.2438649967626687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147867481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963941,0.0009812722,0.000007263712,0.0006557818,0.00041594356,0.00055995677,0.000025899004,0.000049253817,0.00091054937],"genre_scores_gemma":[0.9971827,0.0021425858,0.000037722202,0.00046144082,0.000053197346,0.0000647668,0.000017297794,0.00001454536,0.000025733207],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9965497,0.0022088871,0.0005132869,0.00026893552,0.00016058516,0.00029859509],"domain_scores_gemma":[0.997329,0.0016230919,0.00033394172,0.00055878994,0.00010018619,0.0000549738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016708852,0.00024711716,0.00031138462,0.00006292265,0.00065404474,0.0000674776,0.00026186128,0.00016341075,0.0000104729315],"category_scores_gemma":[0.00024783032,0.00013594417,0.00007803027,0.00025762036,0.00039308594,0.00012604182,0.00026504477,0.0004254058,0.000016184293],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007050956,0.0007834767,0.9348435,0.00020292672,0.00008623208,0.00001129517,0.0020270906,0.00012644875,0.05765495,0.00038040394,0.0012025781,0.0019760062],"study_design_scores_gemma":[0.0007394644,0.00079434575,0.9822116,0.00012690634,0.000053544012,0.00042267822,0.0007394049,0.00065298995,0.0046035717,0.000026546379,0.009449676,0.00017930637],"about_ca_topic_score_codex":0.0070320303,"about_ca_topic_score_gemma":0.0018889613,"teacher_disagreement_score":0.05305138,"about_ca_system_score_codex":0.00015138874,"about_ca_system_score_gemma":0.000041110772,"threshold_uncertainty_score":0.9995802},"labels":[],"label_agreement":null},{"id":"W2148125682","doi":"10.1128/iai.00196-06","title":"Constitutive Differences in Gene Expression Profiles Parallel Genetic Patterns of Susceptibility to Tuberculosis in Mice","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McGill University Health Centre","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health; McGill University","keywords":"Biology; Mycobacterium tuberculosis; Tuberculosis; Gene expression; Gene; Pathogenesis; In vitro; Immunology; Genetics; Pathology; Medicine","score_opus":0.02744179357489499,"score_gpt":0.30831784063076295,"score_spread":0.28087604705586794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148125682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983429,0.00017183393,0.00034772887,0.00027983557,0.000036395315,0.0004146974,0.000010205315,0.000012517763,0.00038391617],"genre_scores_gemma":[0.9989935,0.0004682667,0.00033762364,0.00008814414,0.000021704991,0.00004722718,0.000019433655,0.0000037634018,0.000020312244],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99881095,0.000382516,0.00033189586,0.00018497603,0.00009008922,0.00019958452],"domain_scores_gemma":[0.99950695,0.00016348384,0.0000456738,0.00015038087,0.00006238684,0.000071113354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035727504,0.00009828638,0.0003102501,0.00022385614,0.00004167245,0.0000052332857,0.000036835834,0.00009636354,0.00006611006],"category_scores_gemma":[0.0003355242,0.00007888867,0.000037895396,0.00018379907,0.00011045698,0.00005243189,0.000060961356,0.00023881382,0.0000041674048],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015669747,0.00030766547,0.88786215,0.00007004513,0.000006818299,0.000003096115,0.00014912694,0.000037838483,0.11043082,0.000022014447,0.000033104512,0.0009206557],"study_design_scores_gemma":[0.0007419254,0.0002723782,0.96608955,0.0001281084,0.000006163246,0.000010307372,0.00009764372,0.00012749067,0.03229601,0.00013359578,0.000028555365,0.00006828674],"about_ca_topic_score_codex":0.049996924,"about_ca_topic_score_gemma":0.007537231,"teacher_disagreement_score":0.078227416,"about_ca_system_score_codex":0.00006473907,"about_ca_system_score_gemma":0.000038713566,"threshold_uncertainty_score":0.9563292},"labels":[],"label_agreement":null},{"id":"W2148403797","doi":"10.1128/iai.71.5.2525-2533.2003","title":"Identification of a<i>Treponema pallidum</i>Laminin-Binding Protein","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; University of Washington","keywords":"Laminin; Biology; Bacterial adhesin; Extracellular matrix; Treponema; Basement membrane; Microbiology; Cell biology; Molecular biology; Virulence; Biochemistry; Virology; Gene; Syphilis","score_opus":0.028528978565193302,"score_gpt":0.2927094707889662,"score_spread":0.2641804922237729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148403797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965636,0.00011433397,0.000059910868,0.00006928195,0.00007917955,0.00029616393,0.0000024103808,0.000026025986,0.0027891016],"genre_scores_gemma":[0.9992424,0.000142524,0.00004885381,0.00001767464,0.000009775407,0.000043366326,0.000009148144,0.0000060270713,0.0004801816],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994695,0.00007565701,0.00021005634,0.00009201256,0.00008248896,0.0000702734],"domain_scores_gemma":[0.9995847,0.000031685966,0.00010266541,0.00017151376,0.00007162171,0.00003785542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000258754,0.000066674926,0.00012940286,0.00007814273,0.000087598855,0.000012080201,0.000011062355,0.000046643454,0.000093649025],"category_scores_gemma":[0.00021263934,0.000057076628,0.0000432728,0.00012843814,0.000038375707,0.00005761153,0.000007712281,0.00007684452,0.000013695398],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003327013,0.0010260143,0.6213319,0.00012199468,0.0001087361,0.000003522646,0.00035693782,9.509287e-7,0.36561826,0.0024127448,0.000065089334,0.008920617],"study_design_scores_gemma":[0.0008187152,0.00022207484,0.5073409,0.000073102674,0.0000555209,0.00003760639,0.00008690129,0.000008144112,0.48947474,0.00013558201,0.0016926096,0.000054091965],"about_ca_topic_score_codex":0.00013181893,"about_ca_topic_score_gemma":0.000016678148,"teacher_disagreement_score":0.123856485,"about_ca_system_score_codex":0.0000327333,"about_ca_system_score_gemma":0.000022157541,"threshold_uncertainty_score":0.23275174},"labels":[],"label_agreement":null},{"id":"W2148435973","doi":"10.1128/iai.72.8.4351-4356.2004","title":"Cleavage of Human Transferrin by <i>Porphyromonas gingivalis</i> Gingipains Promotes Growth and Formation of Hydroxyl Radicals","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Porphyromonas gingivalis; Radical; Microbiology; Biology; Hydroxyl radical; Cleavage (geology); Transferrin; Proteolysis; Biochemistry; Bacteria; Enzyme","score_opus":0.017535867151177324,"score_gpt":0.2848661174188884,"score_spread":0.26733025026771107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148435973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976815,0.00025533326,0.0006124017,0.000058106056,0.00004786935,0.00015344047,0.00006105602,0.000026220338,0.001104047],"genre_scores_gemma":[0.99955946,0.00026970258,0.000021895088,0.00002187592,0.0000100739535,0.000003938211,0.00006007353,0.000006742285,0.000046243054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992964,0.00017107016,0.0002489416,0.000095617856,0.000068218804,0.00011973732],"domain_scores_gemma":[0.9997045,0.000033694905,0.00007258833,0.00010661426,0.000041198633,0.000041446652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031144,0.00008635415,0.00018465155,0.00009162514,0.00018912416,0.000019608115,0.000054114236,0.00011590362,0.000044759992],"category_scores_gemma":[0.000045004548,0.00008276558,0.000045490866,0.00010936033,0.00029050928,0.0002427008,0.000034523047,0.00021644718,0.0000029560183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026541229,0.00015529565,0.027743623,0.00021605936,0.000024761204,0.0000013545755,0.0005134453,5.676989e-7,0.9697396,0.0007934309,0.00013149073,0.0006538357],"study_design_scores_gemma":[0.00094794395,0.00035397764,0.10218695,0.00006550288,0.000015265448,0.000051338604,0.000045469067,0.0000058646574,0.8949693,0.0010822673,0.00018938714,0.0000867496],"about_ca_topic_score_codex":0.0038658008,"about_ca_topic_score_gemma":0.00021011657,"teacher_disagreement_score":0.07477031,"about_ca_system_score_codex":0.000013793742,"about_ca_system_score_gemma":0.000012259215,"threshold_uncertainty_score":0.584396},"labels":[],"label_agreement":null},{"id":"W2148596215","doi":"10.1128/iai.01320-07","title":"Comparison of the Effects of<i>Leishmania major</i>or<i>Leishmania donovani</i>Infection on Macrophage Gene Expression","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Leishmania donovani; Biology; Leishmania; Leishmania major; Gene expression; Macrophage; Gene; Microbiology; Leishmaniasis; Immunology; Molecular biology; Visceral leishmaniasis; Parasite hosting; Genetics","score_opus":0.028255422906364045,"score_gpt":0.34088357685006226,"score_spread":0.3126281539436982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148596215","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938498,0.00045586328,0.0004958088,0.00007959793,0.00070328265,0.0008416201,0.0000041697294,0.00007210544,0.0034977302],"genre_scores_gemma":[0.99835074,0.0007962037,0.00014219586,0.00011793928,0.00010828622,0.000019007817,0.000007879293,0.000028036873,0.00042968697],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980181,0.00029966218,0.00058440625,0.00025983594,0.0005104588,0.00032757162],"domain_scores_gemma":[0.998046,0.0005673792,0.00035361794,0.0006017081,0.0003112219,0.00012008799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085157604,0.00024845632,0.0005705186,0.0002665708,0.00042594335,0.00002154009,0.00011113431,0.00018099634,0.000049272465],"category_scores_gemma":[0.0009988135,0.00016186608,0.00018358609,0.0005980139,0.00031936084,0.00014512478,0.00023015444,0.00069736596,0.000009255716],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009718864,0.0009042392,0.40750965,0.0007156423,0.00011633065,0.0000073372726,0.000521327,0.0000044323497,0.5784453,0.00007224601,0.0009497237,0.00978188],"study_design_scores_gemma":[0.0011703684,0.0010527021,0.49789223,0.0002857838,0.000057047528,0.00002816044,0.00004680687,0.000012156538,0.49764174,0.00001942948,0.0017146199,0.00007895927],"about_ca_topic_score_codex":0.0014322842,"about_ca_topic_score_gemma":0.00032180754,"teacher_disagreement_score":0.09038257,"about_ca_system_score_codex":0.00012434849,"about_ca_system_score_gemma":0.000053934986,"threshold_uncertainty_score":0.66007066},"labels":[],"label_agreement":null},{"id":"W2148703390","doi":"10.1128/iai.72.3.1537-1547.2004","title":"The<i>Burkholderia cepacia</i>Epidemic Strain Marker Is Part of a Novel Genomic Island Encoding Both Virulence and Metabolism-Associated Genes in<i>Burkholderia cenocepacia</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":140,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Trust","keywords":"Biology; Burkholderia cenocepacia; Virulence; Genomic island; Burkholderia cepacia complex; Pathogenicity island; Genetics; Gene; Burkholderia; Microbiology; Bacteria","score_opus":0.02605092476837402,"score_gpt":0.29435305875826856,"score_spread":0.26830213398989455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148703390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941843,0.0039312183,0.00025270856,0.0003111818,0.00018331879,0.00044901788,0.000108665736,0.000036662463,0.0005429284],"genre_scores_gemma":[0.98915887,0.010205333,0.00025005857,0.00017328648,0.000050485738,0.00002730457,0.00001753157,0.00002153734,0.00009562104],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984307,0.00017145123,0.00049474335,0.0002480383,0.00024790337,0.00040712793],"domain_scores_gemma":[0.99892706,0.0003126759,0.00020877778,0.00029601878,0.000117636475,0.00013782814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011414114,0.00022062556,0.0004520257,0.00015952271,0.00032662248,0.00006602638,0.00008647986,0.00012479917,0.000050798873],"category_scores_gemma":[0.000790091,0.00017717805,0.000072909,0.00037241788,0.00040698447,0.00025394827,0.00011261388,0.00042276495,0.0000023834712],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030020185,0.0002913829,0.044383395,0.000120003846,0.00012407186,0.0000032101202,0.0011674216,0.00003282979,0.9455638,0.00018668655,0.000089933375,0.00773707],"study_design_scores_gemma":[0.0061078058,0.0003103447,0.94763,0.0004810639,0.000095244635,0.0001075169,0.0007290519,0.00036374122,0.03156343,0.0009253549,0.011380908,0.00030555576],"about_ca_topic_score_codex":0.0026701223,"about_ca_topic_score_gemma":0.00130995,"teacher_disagreement_score":0.91400033,"about_ca_system_score_codex":0.00012760847,"about_ca_system_score_gemma":0.00014770108,"threshold_uncertainty_score":0.7225112},"labels":[],"label_agreement":null},{"id":"W2148778216","doi":"10.1128/iai.71.3.1548-1550.2003","title":"The Zinc-Dependent Major Histocompatibility Complex Class II Binding Site of Streptococcal Pyrogenic Exotoxin C Is Critical for Maximal Superantigen Function and Toxic Activity","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"National Heart, Lung, and Blood Institute; U.S. Public Health Service","keywords":"Superantigen; Exotoxin; Biology; Microbiology; Major histocompatibility complex; Zinc; MHC class II; Immunology; Chemistry; Immune system; T cell; Toxin","score_opus":0.04614438697573595,"score_gpt":0.3222167511219559,"score_spread":0.27607236414621994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148778216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622965,0.000118845026,0.001366399,0.0001608525,0.00017598494,0.0013762536,0.00006383402,0.000046919446,0.00046123346],"genre_scores_gemma":[0.9994173,0.000056388493,0.00010143807,0.000044363176,0.000026747506,0.00017914512,0.000022751765,0.000014069536,0.00013778369],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887115,0.0001892378,0.00029917702,0.00026994187,0.00013332897,0.00023715112],"domain_scores_gemma":[0.9989988,0.00032117014,0.000084023115,0.0003019859,0.00017020457,0.00012381896],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00043113017,0.00018492925,0.00029731652,0.00009219838,0.001342685,0.00005211393,0.000023670089,0.00012460125,0.00021356581],"category_scores_gemma":[0.00024785887,0.0001414305,0.00014505371,0.00015091682,0.00036047067,0.00015257788,0.000050884264,0.00024378122,0.0000050898875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006998479,0.001317429,0.8342378,0.00014831095,0.00025312474,8.8907353e-7,0.00015363972,8.954033e-7,0.15159139,0.0012263994,0.0001235187,0.010246763],"study_design_scores_gemma":[0.0031162095,0.0017151737,0.958698,0.000033903667,0.0002526501,0.00007366823,0.00010145259,0.00043858992,0.030699354,0.00048111522,0.0042422325,0.0001476735],"about_ca_topic_score_codex":0.0007557072,"about_ca_topic_score_gemma":0.00029655278,"teacher_disagreement_score":0.12446018,"about_ca_system_score_codex":0.00013830172,"about_ca_system_score_gemma":0.00006344881,"threshold_uncertainty_score":0.99995744},"labels":[],"label_agreement":null},{"id":"W2148831502","doi":"10.1128/iai.72.7.4010-4022.2004","title":"Identification of <i>Burkholderia cenocepacia</i> Genes Required for Bacterial Survival In Vivo","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Health Sciences Centre; University of Calgary","funders":"","keywords":"Burkholderia cenocepacia; Biology; Mutant; Transposon mutagenesis; Microbiology; Burkholderia; Transposable element; Burkholderia cepacia complex; Mutagenesis; Gene; Genetics; Bacteria","score_opus":0.02881065655190384,"score_gpt":0.3247662356851227,"score_spread":0.29595557913321885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148831502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701583,0.00010724005,0.0018598255,0.00011088171,0.00030825078,0.00037714225,0.000025305395,0.000021059797,0.0001744317],"genre_scores_gemma":[0.99927145,0.00025932022,0.00027223898,0.000009042299,0.000062269406,0.000028630791,0.000025324509,0.0000075498097,0.00006417644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993803,0.00004784382,0.00025096032,0.00010278461,0.00010284003,0.00011528698],"domain_scores_gemma":[0.9995467,0.000067399065,0.00007483846,0.00014637478,0.00012281882,0.0000418733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003669521,0.00006350317,0.0001648204,0.00010868306,0.00006229388,0.000016704918,0.000026431388,0.000048697537,0.000037698763],"category_scores_gemma":[0.0004309297,0.000060869486,0.00003736739,0.00015933542,0.000087856744,0.00015279128,0.00002097275,0.00007225148,0.0000016502705],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047874957,0.00014752291,0.006202276,0.00014006154,0.000011608908,3.354793e-7,0.00012926353,0.000013919508,0.9896662,0.00016597702,0.000016368876,0.0030276666],"study_design_scores_gemma":[0.0033735144,0.0004280666,0.20739776,0.00008242961,0.000016366579,0.0000118466105,0.000100283316,0.000050578186,0.78390265,0.0008798852,0.00368278,0.00007384833],"about_ca_topic_score_codex":0.000972638,"about_ca_topic_score_gemma":0.00030879822,"teacher_disagreement_score":0.20576361,"about_ca_system_score_codex":0.000063886306,"about_ca_system_score_gemma":0.00006532397,"threshold_uncertainty_score":0.24821857},"labels":[],"label_agreement":null},{"id":"W2148851969","doi":"10.1128/iai.69.5.3082-3091.2001","title":"<i>Chlamydia pneumoniae</i>Major Outer Membrane Protein Is a Surface-Exposed Antigen That Elicits Antibodies Primarily Directed against Conformation-Dependent Determinants","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Manitoba Health","funders":"","keywords":"Epitope; Biology; Chlamydophila pneumoniae; Antigen; Chlamydia trachomatis; Monoclonal antibody; Antibody; Chlamydiaceae; Microbiology; Bacterial outer membrane; Chlamydiales; Immunoprecipitation; Chlamydia; Virology; Chlamydiae; Immunology; Escherichia coli; Gene; Biochemistry","score_opus":0.02714689984719424,"score_gpt":0.2805368608307787,"score_spread":0.25338996098358446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148851969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99216527,0.00056666887,0.0000840358,0.0001769541,0.00056730944,0.0010975939,0.00004201606,0.00034747558,0.004952683],"genre_scores_gemma":[0.99304044,0.0029402701,0.000028775374,0.00014593484,0.000031694213,0.00005822305,0.00010295461,0.00002982356,0.0036218707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978337,0.0006038906,0.0004746461,0.00042788865,0.00012501812,0.0005348378],"domain_scores_gemma":[0.998571,0.00013261408,0.00024002523,0.00059069035,0.0004077373,0.000057956375],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007390634,0.00034037296,0.0004327317,0.00030414388,0.0010033059,0.000109319546,0.00017552247,0.00034486756,0.0004676352],"category_scores_gemma":[0.00024331344,0.00030738,0.00011904377,0.0003772534,0.0003494871,0.0007865661,0.00017991237,0.0007908713,0.0005646966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015333446,0.000310732,0.30097622,0.000047194528,0.00018977885,0.000006548806,0.00084599026,0.000005406627,0.6895864,0.000007404995,0.00018641165,0.0076845572],"study_design_scores_gemma":[0.0012234334,0.00015640765,0.44724494,0.00005469515,0.00002210975,0.00026275747,0.00011670106,0.000031866322,0.53946114,0.000019529118,0.011121144,0.00028527857],"about_ca_topic_score_codex":0.0023572168,"about_ca_topic_score_gemma":0.0002867061,"teacher_disagreement_score":0.15012528,"about_ca_system_score_codex":0.0001071983,"about_ca_system_score_gemma":0.0001021962,"threshold_uncertainty_score":0.99993783},"labels":[],"label_agreement":null},{"id":"W2148920499","doi":"10.1128/iai.05114-11","title":"Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":318,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Klebsiella pneumoniae; Biology; Microbiology; Evasion (ethics); Respiratory tract infections; Respiratory tract; Enterobacteriaceae; Virology; Immunology; Respiratory system; Escherichia coli; Immune system; Gene","score_opus":0.03846758021291449,"score_gpt":0.2773730532492479,"score_spread":0.2389054730363334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148920499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99443525,0.00014169651,0.0006715169,0.000008412616,0.00026607633,0.00015087909,0.000004104705,0.000021568727,0.004300469],"genre_scores_gemma":[0.99915475,0.00044970727,0.00018182964,0.00004494357,0.000062678206,0.0000033177228,0.0000145387,0.000014167554,0.00007407629],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992122,0.00017239961,0.0002342903,0.00018441289,0.0000695505,0.00012711289],"domain_scores_gemma":[0.99941665,0.000014038305,0.00016135396,0.00027808192,0.00009397845,0.00003591537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027258886,0.00012618482,0.00013791613,0.000043381064,0.000116769814,0.000012826371,0.000051135514,0.00018942721,0.000057422036],"category_scores_gemma":[0.00013318642,0.000120790726,0.00006953741,0.000095553594,0.0001436077,0.000019991492,0.000054152366,0.00014490706,0.000007125287],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008510904,0.0002376001,0.3660294,0.00004421935,0.000026152486,4.3105035e-7,0.00018880835,7.913185e-7,0.6311896,0.000041229643,0.00007376675,0.0020828797],"study_design_scores_gemma":[0.00024717048,0.000505446,0.60546243,0.000030009693,0.00001577815,0.000013065066,0.000030880718,0.000003438778,0.38791057,0.00011648064,0.0055590025,0.00010569521],"about_ca_topic_score_codex":0.00081151264,"about_ca_topic_score_gemma":0.00011290658,"teacher_disagreement_score":0.243279,"about_ca_system_score_codex":0.00001397429,"about_ca_system_score_gemma":0.0000380002,"threshold_uncertainty_score":0.49257028},"labels":[],"label_agreement":null},{"id":"W2149070070","doi":"10.1128/iai.70.8.4312-4322.2002","title":"<i>Streptococcus suis</i>Interactions with the Murine Macrophage Cell Line J774: Adhesion and Cytotoxicity","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; University of Cambridge; University of Kansas","keywords":"Biology; Cytotoxicity; Streptococcus suis; Microbiology; Cell culture; Macrophage; Adhesion; Streptococcus; Virulence; Bacteria; In vitro; Genetics","score_opus":0.022422551061621738,"score_gpt":0.2636028353855002,"score_spread":0.24118028432387847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149070070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893626,0.00022894859,0.00012396385,0.000496591,0.000086271146,0.0005520163,0.000008554184,0.000096785945,0.009044285],"genre_scores_gemma":[0.9959628,0.000561578,0.0000386414,0.00019583877,0.00007259237,0.00008086638,0.000013079347,0.000014683826,0.0030599246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993303,0.00007787929,0.00015205672,0.0001872269,0.00009177865,0.00016077052],"domain_scores_gemma":[0.9993494,0.000097438024,0.00007456184,0.00027339367,0.00008579954,0.00011939152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008310146,0.00017066847,0.0001755892,0.000087173416,0.0005618103,0.0000533283,0.000023124481,0.000060688322,0.0008155498],"category_scores_gemma":[0.000025239671,0.000103520135,0.000056313485,0.00022468693,0.00014634183,0.0001387401,0.000047144975,0.0003766992,0.000046453875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032446889,0.0026489047,0.9247333,0.00013057663,0.0002526203,0.000045609813,0.0005334556,0.000018002513,0.048520427,0.000050751947,0.0021996645,0.02054223],"study_design_scores_gemma":[0.0030363305,0.0015021232,0.93367034,0.00007367703,0.00021120052,0.0004427022,0.00011927181,0.00064656703,0.04237053,0.000018508747,0.017731424,0.00017731216],"about_ca_topic_score_codex":0.0011150073,"about_ca_topic_score_gemma":0.00021731941,"teacher_disagreement_score":0.020364918,"about_ca_system_score_codex":0.000045827383,"about_ca_system_score_gemma":0.000008748344,"threshold_uncertainty_score":0.89296985},"labels":[],"label_agreement":null},{"id":"W2149143432","doi":"10.1128/iai.01392-07","title":"Cathelicidin LL-37 in Severe <i>Streptococcus pyogenes</i> Soft Tissue Infections in Humans","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"Lunds Universitet","keywords":"Streptococcus pyogenes; Cathelicidin; Microbiology; Biology; Fasciitis; Cellulitis; Streptococcus; Colocalization; Bacteria; Immunology; Antimicrobial peptides; Antimicrobial; Molecular biology; Medicine; Staphylococcus aureus","score_opus":0.017419464873429706,"score_gpt":0.24656773116322192,"score_spread":0.2291482662897922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149143432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622154,0.0003802558,0.000055865643,0.000111130736,0.00026295142,0.00021764482,0.000016394095,0.000079746744,0.0026544726],"genre_scores_gemma":[0.99707574,0.00063484604,0.0000050440713,0.00015021153,0.000023841565,0.0000327353,0.000047913374,0.000013549159,0.002016111],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990392,0.00020826199,0.00026506497,0.00019746296,0.000018677576,0.00027134406],"domain_scores_gemma":[0.99965835,0.00006244259,0.00007174108,0.00015975557,0.000032771193,0.000014966013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001580325,0.00017165743,0.000251125,0.00020656592,0.0005053582,0.000014734218,0.00006378334,0.00023234592,0.00031980572],"category_scores_gemma":[0.000037477526,0.00017420582,0.00005294675,0.0002596506,0.0002637229,0.00021152195,0.00007800212,0.0005185078,0.0001215306],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055287896,0.0007560121,0.5154696,0.000032032316,0.000040546423,0.00001170091,0.0027264059,0.0000791171,0.47216713,0.00022438708,0.0023697382,0.0060680457],"study_design_scores_gemma":[0.0020834454,0.00029720477,0.8354213,0.00006117787,0.000015453135,0.0005096997,0.00043791873,0.0000034013608,0.10214048,0.0001480965,0.058454547,0.00042723017],"about_ca_topic_score_codex":0.012708048,"about_ca_topic_score_gemma":0.004785534,"teacher_disagreement_score":0.37002665,"about_ca_system_score_codex":0.000059493243,"about_ca_system_score_gemma":0.0000392671,"threshold_uncertainty_score":0.9938664},"labels":[],"label_agreement":null},{"id":"W2149578294","doi":"10.1128/iai.68.4.1884-1892.2000","title":"Identification of a <i>Treponema denticola</i> OppA Homologue That Binds Host Proteins Present in the Subgingival Environment","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council","keywords":"Treponema denticola; Biology; Microbiology; Treponema; Peptide sequence; Biochemistry; Plasmid; Molecular biology; Gene; Bacteria; Genetics; Virology","score_opus":0.023585302945709805,"score_gpt":0.2784867670196376,"score_spread":0.2549014640739278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149578294","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982141,0.00027961202,0.000050468967,0.0001243613,0.0001227478,0.00041522898,0.000033082735,0.000014068505,0.00074630196],"genre_scores_gemma":[0.99819165,0.0006032873,0.000004958529,0.00002284584,0.000023974775,0.00006496435,0.00003147578,0.000005768768,0.0010510808],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987349,0.0005853203,0.00024878408,0.00015102509,0.00012125643,0.00015869734],"domain_scores_gemma":[0.99948686,0.00007938706,0.00007767955,0.00031392302,0.000018655355,0.000023507924],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007055489,0.00009070725,0.00012840168,0.000091607944,0.00021456098,0.0000655148,0.0001412386,0.00011029374,0.0009924378],"category_scores_gemma":[0.00003654459,0.00007198006,0.000054085514,0.00014525304,0.00022163364,0.0001545478,0.000055964327,0.00031739418,0.00014107735],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021363316,0.0009553249,0.7352406,0.00011641623,0.00005298262,0.000039414594,0.0012221627,0.00004536275,0.25157502,0.0000697696,0.00039069148,0.010078601],"study_design_scores_gemma":[0.00041976103,0.00011484064,0.9637388,0.000016883629,0.0000101553505,0.00013927733,0.000100189405,0.00005359806,0.028183023,0.000050224106,0.0070957392,0.0000775072],"about_ca_topic_score_codex":0.0031664104,"about_ca_topic_score_gemma":0.00067487295,"teacher_disagreement_score":0.22849819,"about_ca_system_score_codex":0.000031428288,"about_ca_system_score_gemma":0.00001531622,"threshold_uncertainty_score":0.9999208},"labels":[],"label_agreement":null},{"id":"W2149649252","doi":"10.1128/iai.00046-10","title":"<i>Leishmania donovani</i>Amastigotes Impair Gamma Interferon-Induced STAT1α Nuclear Translocation by Blocking the Interaction between STAT1α and Importin-α5","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Fonds Québécois de la Recherche sur la Nature et les Technologies; Canada Research Chairs","keywords":"Leishmania donovani; Biology; Amastigote; STAT1; Interferon gamma; STAT protein; Cell biology; Signal transduction; Nucleoplasm; Interferon regulatory factors; IRF1; Transcription factor; Immune system; Immunology; Leishmania; Visceral leishmaniasis; STAT3; Leishmaniasis; Innate immune system; Biochemistry; Cytoplasm; Nucleolus; Gene","score_opus":0.028348421343763794,"score_gpt":0.31065080537784767,"score_spread":0.28230238403408386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149649252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674696,0.00008679864,0.0001240238,0.001511166,0.0003484082,0.00051246386,0.000012090785,0.00012449769,0.0005335648],"genre_scores_gemma":[0.99907583,0.0004082334,0.000052804364,0.00017112336,0.00013611086,0.000018136554,0.000020090556,0.000032750075,0.00008494735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99862504,0.00019326726,0.00038902505,0.00027071987,0.00023882168,0.00028314302],"domain_scores_gemma":[0.9989544,0.00017584188,0.00018228398,0.00034933197,0.00019397931,0.00014415158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006616468,0.00021690223,0.00029595575,0.00013263845,0.0006364245,0.00014989318,0.00008672631,0.00013432241,0.00007531555],"category_scores_gemma":[0.00033464536,0.00016511718,0.00007653055,0.00023402875,0.00021851635,0.00041025248,0.00014368613,0.0013030432,0.000009141633],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019573604,0.0001797112,0.26920196,0.00011678046,0.00018290458,0.0000017521076,0.0021481097,5.495039e-7,0.6477988,0.00004897189,0.0009989773,0.079125784],"study_design_scores_gemma":[0.0016739763,0.00082585576,0.9079138,0.00015696828,0.000107267224,0.00011694916,0.0010649365,0.0002694488,0.07312537,0.00008733874,0.0144098345,0.00024825835],"about_ca_topic_score_codex":0.0023735468,"about_ca_topic_score_gemma":0.0005957058,"teacher_disagreement_score":0.6387118,"about_ca_system_score_codex":0.00007641118,"about_ca_system_score_gemma":0.00004688985,"threshold_uncertainty_score":0.67332834},"labels":[],"label_agreement":null},{"id":"W2149790515","doi":"10.1128/iai.69.7.4458-4464.2001","title":"Analysis of the Capsule Biosynthetic Locus of <i>Mannheimia</i> ( <i>Pasteurella</i> ) <i>haemolytica</i> A1 and Proposal of a Nomenclature System","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Gene; Complementation; Escherichia coli; Mutant; Biosynthesis; Gene cluster; Structural gene; Microbiology; Bacterial outer membrane; Biochemistry; Molecular biology; Genetics","score_opus":0.004765267215090495,"score_gpt":0.20188935711669218,"score_spread":0.19712408990160168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149790515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956649,0.00007702605,0.0000818695,0.00007336957,0.000100173114,0.00014034755,0.000022437429,0.0000092575165,0.003830625],"genre_scores_gemma":[0.99964094,0.0001359631,0.0000292975,0.00002710128,0.000004899742,0.000002248269,0.0000024117253,0.000004866106,0.0001522824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993518,0.00010005958,0.00025266715,0.000116117415,0.00008583149,0.0000935291],"domain_scores_gemma":[0.9994582,0.000026869759,0.00021056156,0.0002450522,0.000025425343,0.000033905708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015555574,0.00009097706,0.00022626494,0.00006528699,0.00010967708,0.000011552263,0.00007906579,0.000065006105,0.0001487606],"category_scores_gemma":[0.000013928056,0.00006476361,0.00010279222,0.00061640056,0.0003217313,0.00009818158,0.00013914391,0.00013773145,0.0000024504884],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027243079,0.00016613596,0.044787727,0.000057716858,0.0001630853,4.330959e-7,0.00045127535,0.00012164291,0.9517651,0.000087752516,0.000044324814,0.0023275362],"study_design_scores_gemma":[0.00057478336,0.00025978073,0.7694562,0.00016123267,0.0012006153,0.00015333055,0.00048515087,0.00080859975,0.22223616,0.000030115705,0.0044116327,0.00022239704],"about_ca_topic_score_codex":0.004735732,"about_ca_topic_score_gemma":0.0006614391,"teacher_disagreement_score":0.72952896,"about_ca_system_score_codex":0.00003057722,"about_ca_system_score_gemma":0.000008458935,"threshold_uncertainty_score":0.7159042},"labels":[],"label_agreement":null},{"id":"W2149928655","doi":"10.1128/iai.70.8.4547-4555.2002","title":"Patterns of Epithelial Cell Invasion by Different Species of the <i>Burkholderia cepacia</i> Complex in Well-Differentiated Human Airway Epithelia","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Cystic Fibrosis Foundation","keywords":"Microbiology; Biology; Burkholderia; Respiratory epithelium; Epithelium; Burkholderia cepacia complex; Virulence; Pathogen; Bacteria; Genetics","score_opus":0.031687528127489914,"score_gpt":0.26695518029401016,"score_spread":0.23526765216652024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149928655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99806124,0.00013085955,0.00005778974,0.00010269595,0.00010043118,0.0003534826,0.00007530196,0.000017395445,0.0011008235],"genre_scores_gemma":[0.9984662,0.00057827804,0.00000913255,0.000028805853,0.000018895857,0.000007924965,0.00004273174,0.000011772501,0.0008362635],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987873,0.00024924253,0.00037371746,0.00014134344,0.0002653531,0.0001830704],"domain_scores_gemma":[0.9992732,0.00009641654,0.00016467838,0.0003185371,0.000083809,0.0000633901],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013157437,0.00014715483,0.00034032398,0.00012070107,0.00013073004,0.000013042084,0.0000949807,0.000068679314,0.0014627887],"category_scores_gemma":[0.000081128244,0.00009876215,0.00009176452,0.00018751474,0.00017747584,0.00006764919,0.00012275562,0.00031824486,0.000006056767],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054177668,0.00058168557,0.27697313,0.00017786057,0.000012582232,3.1657086e-7,0.0002571009,0.0000010625791,0.72118884,0.000010356991,0.00031991987,0.00042298896],"study_design_scores_gemma":[0.0013317899,0.00029283355,0.5920894,0.0001468911,0.000014610241,0.0000026150599,0.00008397023,0.0000927306,0.4049794,0.000027154443,0.0008815768,0.000056996894],"about_ca_topic_score_codex":0.0023029784,"about_ca_topic_score_gemma":0.0004254547,"teacher_disagreement_score":0.3162094,"about_ca_system_score_codex":0.00005145672,"about_ca_system_score_gemma":0.0000075960143,"threshold_uncertainty_score":0.99945},"labels":[],"label_agreement":null},{"id":"W2149947835","doi":"10.1128/iai.00455-08","title":"Specific Roles of the <i>iroBCDEN</i> Genes in Virulence of an Avian Pathogenic <i>Escherichia coli</i> O78 Strain and in Production of Salmochelins","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Virulence; Pathogenic Escherichia coli; Escherichia coli; Microbiology; Gene; Strain (injury); Enterobacteriaceae; Genetics","score_opus":0.016426816042819474,"score_gpt":0.25315872992336785,"score_spread":0.23673191388054837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149947835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978805,0.0017349883,0.000011431416,0.000025245366,0.00004657935,0.00019072303,0.000012315174,0.0000023177313,0.0000959008],"genre_scores_gemma":[0.9909127,0.008907378,0.00010908175,0.000012553131,0.000019150431,0.000010459182,0.0000055832684,0.0000055481496,0.00001755662],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991892,0.00025657326,0.00022685234,0.00014272187,0.000086929635,0.00009773591],"domain_scores_gemma":[0.9995594,0.000012735837,0.000102940525,0.00021844714,0.00008551637,0.000020974081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034807943,0.00008198282,0.00014760839,0.000052835716,0.00006246492,0.0000026914347,0.00007226692,0.00007000676,0.0000015746648],"category_scores_gemma":[0.00011309077,0.00006880684,0.00003060314,0.00022750362,0.0003553523,0.000011340891,0.00010124024,0.00013004006,5.9554075e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007263762,0.00015970542,0.17770274,0.00004265264,0.000008564438,2.3336845e-7,0.0002944139,0.000039935156,0.8196508,0.000005733781,0.0000027706212,0.002019788],"study_design_scores_gemma":[0.00022793208,0.00014130356,0.6064729,0.000022297576,0.0000023869648,0.0000056456556,0.00014665323,0.00001681265,0.39274055,0.000018920357,0.00016085661,0.00004375947],"about_ca_topic_score_codex":0.0004737134,"about_ca_topic_score_gemma":0.0016982147,"teacher_disagreement_score":0.42877015,"about_ca_system_score_codex":0.000008228513,"about_ca_system_score_gemma":0.00005062534,"threshold_uncertainty_score":0.28058612},"labels":[],"label_agreement":null},{"id":"W2149963259","doi":"10.1128/iai.73.9.5514-5523.2005","title":"Host Immune Status Influences the Development of Attaching and Effacing Lesions in Weaned Pigs","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Université de Montréal","funders":"","keywords":"Cecum; Biology; Immune system; Ileum; Intimin; Downregulation and upregulation; Microbiology; Dexamethasone; Jejunum; Cytokine; In vivo; Lesion; Escherichia coli; Immunology; Enterobacteriaceae; Pathology; Endocrinology; Medicine","score_opus":0.020469733694532435,"score_gpt":0.3129407757919193,"score_spread":0.2924710420973869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149963259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780643,0.0014664917,0.00008499741,0.00007900063,0.000017294411,0.000091898546,0.0000011675306,0.0000039681104,0.00044878057],"genre_scores_gemma":[0.9981469,0.0014620788,0.0003044657,0.00002559353,0.000012092502,0.000011270549,0.000003948417,0.0000031461207,0.0000305099],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994867,0.00010782049,0.00015210437,0.00008026821,0.000054315395,0.000118822136],"domain_scores_gemma":[0.9997627,0.00003843115,0.00004283167,0.00009618295,0.000036922727,0.000022929255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038705664,0.0000621127,0.0000755765,0.00003615744,0.00025828654,0.000015077793,0.00003798852,0.000036004414,0.0000030932497],"category_scores_gemma":[0.00019839397,0.000045621862,0.00001378262,0.00007542197,0.00010432808,0.0000075955227,0.00017458256,0.00012979931,4.707709e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028256727,0.00004721017,0.2708997,0.00002392298,0.000033162207,7.727715e-8,0.0016309506,0.000031267966,0.6994038,0.000013877736,0.0000053653957,0.027882384],"study_design_scores_gemma":[0.00024808987,0.000055869983,0.94704056,0.00002232223,0.0000026069406,0.0000016420031,0.0004549342,0.000043496293,0.047361,0.0000043043083,0.0047094477,0.000055702505],"about_ca_topic_score_codex":0.00062494975,"about_ca_topic_score_gemma":0.0018367145,"teacher_disagreement_score":0.6761409,"about_ca_system_score_codex":0.000012394783,"about_ca_system_score_gemma":0.000046802685,"threshold_uncertainty_score":0.19865574},"labels":[],"label_agreement":null},{"id":"W2149974465","doi":"10.1128/iai.68.12.6554-6560.2000","title":"Identification of a Siderophore Receptor Required for Ferric Ornibactin Uptake in <i>Burkholderia cepacia</i>","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Cystic Fibrosis Foundation","keywords":"Biology; Siderophore; Bacterial outer membrane; Mutant; Microbiology; Burkholderia; Virulence; Membrane protein; Burkholderia cepacia complex; Gene; Molecular biology; Biochemistry; Bacteria; Escherichia coli; Membrane; Genetics","score_opus":0.020563098237341863,"score_gpt":0.23851595361302724,"score_spread":0.21795285537568537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149974465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990418,0.00006295743,0.0000012949595,0.00017691105,0.00009236558,0.00024125681,0.000028291739,0.000036145666,0.00031900287],"genre_scores_gemma":[0.9994216,0.0000999273,0.000023605988,0.000046048044,0.000039239618,0.00003286101,0.000045725916,0.0000010342824,0.00028997636],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992887,0.00009714804,0.00027933423,0.0001431234,0.00006615445,0.00012559115],"domain_scores_gemma":[0.9996494,0.00010814297,0.00009760763,0.00005797143,0.000055729615,0.000031139425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031772905,0.000082220206,0.00012880175,0.00002008436,0.0001394038,0.00003160979,0.00006187073,0.00008779605,0.0004928292],"category_scores_gemma":[0.00011712197,0.000041397834,0.00005815969,0.00032167032,0.000043538912,0.00015489789,0.000012970525,0.00008202577,0.000017893075],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005543865,0.00010117102,0.0063035227,0.000010850738,0.0000060654174,7.161799e-8,0.00016297039,3.9428824e-7,0.9462971,0.000016019452,0.00010240443,0.046944],"study_design_scores_gemma":[0.00036583218,0.00024213699,0.6705722,0.000029634082,0.000011898597,0.0000044252347,0.00014988791,0.000029274568,0.32177266,0.00039274534,0.006283121,0.00014613957],"about_ca_topic_score_codex":0.0013944814,"about_ca_topic_score_gemma":0.0007240623,"teacher_disagreement_score":0.66426873,"about_ca_system_score_codex":0.000034391884,"about_ca_system_score_gemma":0.000008801701,"threshold_uncertainty_score":0.5396134},"labels":[],"label_agreement":null},{"id":"W2149990806","doi":"10.1128/iai.72.8.4486-4493.2004","title":"Characterization of an I-E-Restricted, gp63-Specific, CD4-T-Cell Clone from<i>Leishmania major</i>-Resistant C3H Mice That Secretes Type 2 Cytokines and Exacerbates Infection with<i>L. major</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Epitope; clone (Java method); Leishmania major; Immune system; Immunology; Context (archaeology); Proinflammatory cytokine; Leishmania; T cell; Cutaneous leishmaniasis; Virology; Molecular biology; Antigen; Inflammation; Parasite hosting; Leishmaniasis; Gene; Genetics","score_opus":0.019878905659113405,"score_gpt":0.2507334980563327,"score_spread":0.2308545923972193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149990806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724984,0.0007370964,0.00019342921,0.0002589619,0.0001684657,0.0006114032,0.000041684587,0.00014594095,0.0005931547],"genre_scores_gemma":[0.9905226,0.0085117,0.0002475913,0.000083153434,0.00013044124,0.000029256553,0.00031977988,0.000042689906,0.00011279289],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984017,0.0002115813,0.00036364506,0.00038277893,0.00034920895,0.00029108065],"domain_scores_gemma":[0.9986281,0.000097487195,0.00025863055,0.00037990557,0.00046162223,0.00017429517],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025968347,0.00030612465,0.0004755318,0.0002929073,0.00038868148,0.000110592715,0.000064392974,0.00017096094,0.00006552524],"category_scores_gemma":[0.0000986105,0.00025818663,0.000052472387,0.00056332425,0.0002602893,0.00063783367,0.000104646824,0.00041760612,0.000010076503],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010750317,0.00040407636,0.1895296,0.0001908323,0.00011985361,0.000009648625,0.00046638868,0.0000032516575,0.8071716,0.000049159255,0.000024476672,0.0009561101],"study_design_scores_gemma":[0.0028088926,0.0014771695,0.7221897,0.00017373325,0.000114879826,0.000051461055,0.00015348339,0.000018193903,0.27087572,0.00009681753,0.0018317563,0.00020817922],"about_ca_topic_score_codex":0.012778847,"about_ca_topic_score_gemma":0.0010033073,"teacher_disagreement_score":0.53629583,"about_ca_system_score_codex":0.000120615216,"about_ca_system_score_gemma":0.00008092036,"threshold_uncertainty_score":0.999987},"labels":[],"label_agreement":null},{"id":"W2150515181","doi":"10.1128/iai.70.5.2622-2629.2002","title":"Construction and Characterization of an Acapsular Mutant of <i>Mannheimia haemolytica</i> A1","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Biology; Mutant; Microbiology; Molecular biology; Lipopolysaccharide; Gene; Biochemistry","score_opus":0.01590543512271912,"score_gpt":0.19902282753744158,"score_spread":0.18311739241472247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150515181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995331,0.000028665405,0.000003316735,0.00006420836,0.000048811602,0.00007418161,0.0000153226,0.000022300757,0.00021006653],"genre_scores_gemma":[0.999744,0.00013516669,0.00003450608,0.000027695862,0.000022011154,0.0000016086585,0.000024074903,5.17701e-7,0.0000104364535],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99956185,0.000079394944,0.00014852596,0.00008592753,0.000060789538,0.00006354347],"domain_scores_gemma":[0.9997319,0.00002910239,0.000106051884,0.000038994483,0.000059983762,0.000033944056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010121971,0.000059633127,0.0001064608,0.000014480847,0.000098457574,0.000017176624,0.000029880151,0.00006460525,0.00013751061],"category_scores_gemma":[0.00002845388,0.000029004035,0.000021953067,0.00014370937,0.000118575015,0.00019956872,0.000023493882,0.00006423252,0.0000013139116],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000006631164,0.000061156315,0.01661189,0.000008588544,0.0000072454504,1.493468e-7,0.000081597915,2.1735683e-8,0.9375604,0.000106216474,0.0000010467074,0.04555505],"study_design_scores_gemma":[0.00013133424,0.00025135314,0.5075345,0.000017004533,0.00001615655,0.000033937114,0.000051348157,0.000119569064,0.49144736,0.00010986924,0.00022074474,0.0000668082],"about_ca_topic_score_codex":0.00039148002,"about_ca_topic_score_gemma":0.00003146231,"teacher_disagreement_score":0.49092263,"about_ca_system_score_codex":0.000005240538,"about_ca_system_score_gemma":0.0000012836061,"threshold_uncertainty_score":0.15056446},"labels":[],"label_agreement":null},{"id":"W2150788540","doi":"10.1128/iai.72.5.2477-2483.2004","title":"Differential Regulation of DAP12 and Molecules Associated with DAP12 during Host Responses to Mycobacterial Infection","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammation biomarkers and pathways","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Government of Ontario","keywords":"Biology; Host (biology); Differential (mechanical device); Virology; Ecology","score_opus":0.009637798701956609,"score_gpt":0.21217923674880637,"score_spread":0.20254143804684976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150788540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985597,0.000026589874,0.0006191095,0.00003566524,0.00030487496,0.00018844518,0.000023142282,0.000056104658,0.00018633151],"genre_scores_gemma":[0.9996859,0.000048120062,0.000017599707,0.000012439068,0.000019138532,0.000009003499,0.00009665492,0.000007854549,0.00010328688],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992934,0.00022635868,0.00019769087,0.00012873531,0.000030040013,0.00012375982],"domain_scores_gemma":[0.9995871,0.000049090406,0.0001335534,0.00011158397,0.00009805305,0.00002062822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015278283,0.00011618622,0.00015621411,0.0001603181,0.0003389325,0.000026130801,0.000022539502,0.0001595297,0.0000862322],"category_scores_gemma":[0.00013135132,0.000102347905,0.000026984088,0.00013696011,0.00011899994,0.00014519955,0.000043319236,0.00012924407,0.0000063916846],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009873518,0.00007640931,0.053532563,0.000018590035,0.00008375687,3.531229e-7,0.00056309265,0.00001100458,0.9439098,0.00027049778,0.0000052615173,0.00054130965],"study_design_scores_gemma":[0.0014935781,0.00028828628,0.7263565,0.000062247185,0.000023548162,0.00002726693,0.000021337695,0.0000013717083,0.2714663,0.000047105186,0.0001223602,0.00009008029],"about_ca_topic_score_codex":0.000961547,"about_ca_topic_score_gemma":0.00034433597,"teacher_disagreement_score":0.67282397,"about_ca_system_score_codex":0.000042103256,"about_ca_system_score_gemma":0.000025298179,"threshold_uncertainty_score":0.41736266},"labels":[],"label_agreement":null},{"id":"W2150887383","doi":"10.1128/iai.00707-08","title":"<i>Campylobacter jejuni</i> Drives MyD88-Independent Interleukin-6 Secretion via Toll-Like Receptor 2","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Canadian Association of Gastroenterology","keywords":"Campylobacter jejuni; Biology; Microbiology; Innate immune system; Signal transduction; Secretion; Flagellin; Immune system; Toll-like receptor; Receptor; Immunology; Cell biology; Bacteria","score_opus":0.013324523593114826,"score_gpt":0.22838976947280096,"score_spread":0.21506524587968612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150887383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953667,0.000106962594,0.00008300622,0.0010148028,0.0005803585,0.00015200766,0.000008131519,0.00014490538,0.0025431358],"genre_scores_gemma":[0.9970548,0.00044748627,0.000024682782,0.0017863648,0.00023574756,0.0000073666993,0.00012174612,0.0000010725785,0.00032073553],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987296,0.00034598543,0.0002766594,0.00027019726,0.00010386448,0.00027373194],"domain_scores_gemma":[0.99947137,0.0001251945,0.00011991224,0.00009444917,0.00006703905,0.0001220351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003691293,0.00018710626,0.00023015484,0.000025063067,0.0003693557,0.000070095804,0.0001213445,0.00019993818,0.00083924213],"category_scores_gemma":[0.000047083515,0.00008517106,0.00011037919,0.0001880021,0.00007266999,0.00023238816,0.000060346898,0.00029670182,0.000098291704],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012056973,0.00030439635,0.09249146,0.0000053290937,0.00002755814,0.0000019556462,0.00024038918,0.0000017578388,0.62313426,0.00025249753,0.0016746193,0.2817452],"study_design_scores_gemma":[0.00020719918,0.00075025606,0.92073447,0.000017635888,0.000012789366,0.000058511916,0.00010886736,0.00003425687,0.002672414,0.0013247221,0.073856495,0.00022236553],"about_ca_topic_score_codex":0.00083110406,"about_ca_topic_score_gemma":0.00041933323,"teacher_disagreement_score":0.828243,"about_ca_system_score_codex":0.00004440428,"about_ca_system_score_gemma":0.000004571639,"threshold_uncertainty_score":0.91891134},"labels":[],"label_agreement":null},{"id":"W2150961044","doi":"10.1128/iai.02827-14","title":"Dendritic Cell-Based Immunization Ameliorates Pulmonary Infection with Highly Virulent Cryptococcus gattii","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Virulence; Biology; Cryptococcus gattii; Cryptococcus neoformans; Immunization; Virology; Microbiology; Cryptococcosis; Cryptococcus; Vaccination; Immunology; Immune system","score_opus":0.02674023954317113,"score_gpt":0.26729935295947255,"score_spread":0.24055911341630143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150961044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878855,0.00043273624,0.0033111288,0.00024247066,0.00038664608,0.00045411,0.0000038045955,0.00024256723,0.007041066],"genre_scores_gemma":[0.99866015,0.00037454625,0.00018372336,0.00021779862,0.00008997896,0.00008524457,0.00006428348,0.00002490055,0.00029939477],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900174,0.00017792854,0.00024191239,0.0001970198,0.00018156406,0.00019982082],"domain_scores_gemma":[0.9989114,0.000062153114,0.00010085838,0.00026863618,0.0005001807,0.00015680984],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029843047,0.00020970628,0.00025925072,0.00027335322,0.00046031259,0.00006700627,0.000024671665,0.00011262453,0.000048507885],"category_scores_gemma":[0.000099756064,0.00017005364,0.000059431924,0.00045656186,0.00015165706,0.0002520342,0.000040608516,0.00035228743,0.000053139407],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057083776,0.0015194959,0.96979094,0.00028284464,0.00012258954,0.000019447927,0.0004291274,0.0011271198,0.021510333,0.00015369225,0.00072898355,0.0037445948],"study_design_scores_gemma":[0.003152886,0.0028307815,0.9530889,0.00022982013,0.00025468456,0.00023008898,0.00028359576,0.002696165,0.021789221,0.00015226268,0.014899328,0.00039226754],"about_ca_topic_score_codex":0.0039267694,"about_ca_topic_score_gemma":0.00022387953,"teacher_disagreement_score":0.016702034,"about_ca_system_score_codex":0.00015967856,"about_ca_system_score_gemma":0.00011747213,"threshold_uncertainty_score":0.6934586},"labels":[],"label_agreement":null},{"id":"W2151026417","doi":"10.1128/iai.73.11.7161-7169.2005","title":"Analysis of the Contribution of <i>Salmonella</i> Pathogenicity Islands 1 and 2 to Enteric Disease Progression Using a Novel Bovine Ileal Loop Model and a Murine Model of Infectious Enterocolitis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":172,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of British Columbia","funders":"","keywords":"Biology; Salmonella; Microbiology; Enterocolitis; Enterobacteriaceae; Pathogenicity; Virology; Enteric virus; Pathogenicity island; Animal model; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.024140413216587782,"score_gpt":0.2651061691007537,"score_spread":0.2409657558841659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151026417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983195,0.00014058099,0.0010857035,0.00007530147,0.000017276141,0.00021092738,0.00012378256,0.000009624876,0.000017286966],"genre_scores_gemma":[0.9996452,0.00017413613,0.000049268234,0.00008136186,0.000014402825,0.000007794227,0.000021167893,7.840933e-7,0.000005929313],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992391,0.000120342454,0.00029560702,0.00014893498,0.000079211255,0.000116827105],"domain_scores_gemma":[0.99945927,0.00006691408,0.00021268254,0.00006897941,0.00011488786,0.00007725531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025739666,0.0001011308,0.00029683617,0.000042885837,0.000114510076,0.000008113303,0.000046792826,0.00006352079,0.000006861368],"category_scores_gemma":[0.00008610269,0.000044650318,0.00009233594,0.00033886146,0.00011197911,0.00007578337,0.00014144217,0.0000758891,3.9152816e-8],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001555136,0.00018038928,0.5906594,0.000013182899,0.000055758108,3.3402646e-8,0.000098265824,0.0029768595,0.40203065,0.000027013748,0.0000010972248,0.0038018462],"study_design_scores_gemma":[0.00028584746,0.00018599772,0.7727429,0.000030107813,0.00021320606,0.000004474109,0.00001482677,0.2240824,0.0022946156,0.00006938219,0.000011983198,0.00006424047],"about_ca_topic_score_codex":0.00087545725,"about_ca_topic_score_gemma":0.00063428446,"teacher_disagreement_score":0.39973605,"about_ca_system_score_codex":0.00001663321,"about_ca_system_score_gemma":0.00000810661,"threshold_uncertainty_score":0.18207872},"labels":[],"label_agreement":null},{"id":"W2151201851","doi":"10.1128/iai.01167-07","title":"<i>Burkholderia cenocepacia</i> Requires the RpoN Sigma Factor for Biofilm Formation and Intracellular Trafficking within Macrophages","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"rpoN; Burkholderia cenocepacia; Biology; Microbiology; Biofilm; Regulon; Flagellin; Sigma factor; Virulence; Mutant; Bacteria; Gene expression; Gene; Biochemistry","score_opus":0.03859521333551467,"score_gpt":0.2982060189200838,"score_spread":0.2596108055845691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151201851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930134,0.0010123624,0.004695254,0.0003588187,0.00013414811,0.00056549977,0.00001741702,0.00006860376,0.00013454384],"genre_scores_gemma":[0.99813926,0.0010024258,0.000517842,0.00008893085,0.00007089365,0.000030414933,0.000031766253,0.00001196474,0.00010648612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927723,0.00008729679,0.00020057162,0.000121867895,0.00013969913,0.00017334151],"domain_scores_gemma":[0.99938446,0.00020385117,0.00008402457,0.00015709661,0.00009590145,0.00007466114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026916486,0.00011259465,0.00015658641,0.00007762919,0.00061698863,0.000052282354,0.00003400901,0.00006278693,0.000028944283],"category_scores_gemma":[0.00044308006,0.00007741385,0.0000399127,0.00010074819,0.00023586515,0.00032929122,0.000033710054,0.00021807336,0.000001991343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052529934,0.00011671847,0.0058003506,0.00037429886,0.000053294465,0.0000057272646,0.004237057,0.00002435804,0.94039655,0.00017091769,0.00024657577,0.048048884],"study_design_scores_gemma":[0.004069228,0.0020299973,0.31360123,0.00026637068,0.00008492067,0.0011447332,0.001365433,0.009615181,0.6262173,0.0003371245,0.040900353,0.0003681176],"about_ca_topic_score_codex":0.00016436754,"about_ca_topic_score_gemma":0.000044421417,"teacher_disagreement_score":0.3141792,"about_ca_system_score_codex":0.00004071596,"about_ca_system_score_gemma":0.00003171338,"threshold_uncertainty_score":0.474544},"labels":[],"label_agreement":null},{"id":"W2151289800","doi":"10.1128/iai.73.12.8402-8406.2005","title":"Intrapulmonary, Adenovirus-Mediated Overexpression of KARAP/DAP12 Enhances Fungal Clearance during Invasive Aspergillosis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pleural and Pulmonary Diseases","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Aspergillosis; Adenoviridae; Signal transducing adaptor protein; Peripheral blood mononuclear cell; Vector (molecular biology); Mycosis; Aspergillus fumigatus; Viral vector; Immunology; Virology; Microbiology; Genetic enhancement; In vitro; Signal transduction; Cell biology; Recombinant DNA; Gene","score_opus":0.013664798649057246,"score_gpt":0.25197087756263664,"score_spread":0.23830607891357938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151289800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963137,0.0010113713,0.000003074049,0.00021110084,0.000071645445,0.00015540623,0.000025549089,0.000066381894,0.0021417853],"genre_scores_gemma":[0.9967281,0.002640337,0.000021639022,0.00017095421,0.00013239242,0.000009817901,0.000034497814,0.000009848574,0.00025240495],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992256,0.00008628771,0.00023696291,0.00014831367,0.00015169727,0.00015110959],"domain_scores_gemma":[0.9994562,0.00008266169,0.00010570547,0.00015855618,0.000078339915,0.00011851734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007365124,0.000132686,0.00022216812,0.00010646258,0.00017952984,0.0000101491005,0.00004231509,0.00008408057,0.0003611472],"category_scores_gemma":[0.00012911392,0.000110149886,0.000079540165,0.00018827376,0.00011449895,0.00029575077,0.000051038904,0.00022818665,0.000028726869],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010140893,0.00042759604,0.22783865,0.00022011448,0.000048814603,0.000007142379,0.00017112785,0.0000115521025,0.76393473,0.000012837302,0.00013005939,0.0061832583],"study_design_scores_gemma":[0.00060978625,0.00019330396,0.7340633,0.00026211631,0.000029836001,0.00006861299,0.000054145265,0.000045307952,0.2635972,0.000022270246,0.00096212904,0.00009198199],"about_ca_topic_score_codex":0.0003388788,"about_ca_topic_score_gemma":0.000041041283,"teacher_disagreement_score":0.5062247,"about_ca_system_score_codex":0.000032382926,"about_ca_system_score_gemma":0.000037509693,"threshold_uncertainty_score":0.4491782},"labels":[],"label_agreement":null},{"id":"W2151364373","doi":"10.1128/iai.01034-06","title":"Peritoneal Lavage Cells of Indonesian Thin-Tail Sheep Mediate Antibody-Dependent Superoxide Radical Cytotoxicity In Vitro against Newly Excysted Juvenile <i>Fasciola gigantica</i> but Not Juvenile <i>Fasciola hepatica</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helminth infection and control","field":"Veterinary","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University; Australian Centre for International Agricultural Research; Canada Research Chairs; Monash University","keywords":"Biology; Fasciola gigantica; Fasciola hepatica; Immunology; Hepatica; Cytotoxic T cell; Microbiology; Molecular biology; In vitro; Helminths; Biochemistry","score_opus":0.01900569897094845,"score_gpt":0.2813142938455677,"score_spread":0.26230859487461927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151364373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99251556,0.00009487993,0.0023521865,0.00012823557,0.0009608283,0.00078169844,0.00012058141,0.0002743555,0.0027716735],"genre_scores_gemma":[0.9981424,0.00022636846,0.00015037786,0.0009822067,0.00021608279,0.00004062298,0.00008341681,0.0000673447,0.00009114372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9952039,0.0010170118,0.0016641939,0.000615141,0.0006254696,0.00087426865],"domain_scores_gemma":[0.99762094,0.0005549794,0.00043400432,0.00071777933,0.00021941245,0.000452911],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0029574588,0.00055252033,0.0010594701,0.0005607186,0.0004804629,0.00012216672,0.0003107326,0.00057528145,0.0001980014],"category_scores_gemma":[0.00038913047,0.0005556144,0.00033178792,0.0006437011,0.00049851334,0.0005808334,0.00025955986,0.0014728208,0.000104623694],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016438359,0.0009784215,0.03369913,0.0001623184,0.000075499054,0.00017621474,0.0010714428,0.000013322476,0.9590922,0.00006882202,0.000042888307,0.002975907],"study_design_scores_gemma":[0.0066518676,0.0011646915,0.20750006,0.00015617373,0.00008784019,0.00030415162,0.0007050408,0.0025228222,0.7775631,0.000048040332,0.0024372241,0.0008590188],"about_ca_topic_score_codex":0.006137785,"about_ca_topic_score_gemma":0.00095554953,"teacher_disagreement_score":0.18152913,"about_ca_system_score_codex":0.0002370016,"about_ca_system_score_gemma":0.00018834168,"threshold_uncertainty_score":0.9996895},"labels":[],"label_agreement":null},{"id":"W2151757385","doi":"10.1128/iai.72.2.774-781.2004","title":"Investigation of a Novel DNase of <i>Streptococcus suis</i> Serotype 2","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Institut National de la Recherche Agronomique; University of Leeds","keywords":"Biology; Streptococcus suis; Molecular biology; Nuclease; DNA; Virulence; Recombinant DNA; Blot; Mutant; Biochemistry; Gene","score_opus":0.04331131353568205,"score_gpt":0.29498801055004564,"score_spread":0.25167669701436357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151757385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768364,0.000038068276,0.0003270715,0.0000562288,0.00007303733,0.00031701926,0.0000085512465,0.0000305617,0.0014657927],"genre_scores_gemma":[0.99958056,0.000049446626,0.00022426476,0.000038198446,0.000015165282,0.00002088376,0.000022256083,0.0000060113275,0.00004321266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995505,0.000018432153,0.00020641592,0.00008413956,0.00007075093,0.00006975034],"domain_scores_gemma":[0.9994998,0.000023982355,0.00010807713,0.00016548748,0.00014109645,0.00006155904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007977013,0.000079560574,0.00016747457,0.00010613818,0.000060286664,0.0000041321823,0.000013162152,0.00006413251,0.000044168253],"category_scores_gemma":[0.000062865176,0.00006862614,0.000060062644,0.0002457416,0.00012353287,0.00007939686,0.000018506234,0.00010417721,0.0000032245232],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047246496,0.0003817605,0.86297095,0.000076681645,0.00007025275,6.0122176e-7,0.00015267562,0.000020622443,0.13434096,0.00042907195,0.000008518879,0.0015006823],"study_design_scores_gemma":[0.0023890322,0.0005023893,0.7163679,0.00010036161,0.000060602542,0.000023904764,0.000024820216,0.000010167122,0.28014043,0.00022930118,0.00010939109,0.000041694573],"about_ca_topic_score_codex":0.004220626,"about_ca_topic_score_gemma":0.0000743226,"teacher_disagreement_score":0.14660302,"about_ca_system_score_codex":0.000036587127,"about_ca_system_score_gemma":0.00006338985,"threshold_uncertainty_score":0.6380352},"labels":[],"label_agreement":null},{"id":"W2151791651","doi":"10.1128/iai.01275-08","title":"<i>Salmonella</i> -Containing Vacuoles Display Centrifugal Movement Associated with Cell-to-Cell Transfer in Epithelial Cells","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University; Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation of Canada; University of Washington; Purdue University; Crohn's and Colitis Foundation; Burroughs Wellcome Fund","keywords":"Biology; Effector; Salmonella enterica; Type three secretion system; Vacuole; Secretion; Microbiology; Salmonella; Cell biology; Virulence; Cytoplasm; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.016607095352010486,"score_gpt":0.20136324615356538,"score_spread":0.18475615080155489,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151791651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796736,0.00005718506,0.000042516152,0.0001280043,0.00012610476,0.00022841328,0.000025563542,0.00005217136,0.0013726563],"genre_scores_gemma":[0.99873793,0.00029517067,0.00000780565,0.00068676,0.00005281617,0.000016049713,0.000041271753,0.0000019049932,0.00016030463],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987419,0.00031284156,0.0002557879,0.0002451034,0.00010891332,0.00033543276],"domain_scores_gemma":[0.99948734,0.00024465218,0.000050531104,0.00005598101,0.000042341737,0.00011915861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003435943,0.00017850673,0.0002564107,0.000027450335,0.0002953239,0.000021761103,0.00008817162,0.00013106626,0.00008559344],"category_scores_gemma":[0.000017990553,0.000079077596,0.00005985432,0.0002974808,0.000064544765,0.00009009495,0.00003625907,0.00025732454,0.000018770592],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015536553,0.00035241648,0.40828168,0.000004061229,0.000010073681,0.0000095951145,0.00045033635,0.00006457373,0.58939564,0.000013921525,0.00005901271,0.0012033448],"study_design_scores_gemma":[0.0007115574,0.00080543105,0.88189393,0.000018886043,0.000011000029,0.0000071551526,0.00019458387,0.00003324534,0.11456216,0.000028476046,0.0015081449,0.00022542675],"about_ca_topic_score_codex":0.0040225,"about_ca_topic_score_gemma":0.0020520447,"teacher_disagreement_score":0.47483346,"about_ca_system_score_codex":0.000045829704,"about_ca_system_score_gemma":0.000010409162,"threshold_uncertainty_score":0.6080844},"labels":[],"label_agreement":null},{"id":"W2152042796","doi":"10.1128/iai.69.2.650-656.2001","title":"Virulence Plasmid of<i>Rhodococcus equi</i>Contains Inducible Gene Family Encoding Secreted Proteins","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada","keywords":"Rhodococcus equi; Virulence; Biology; Plasmid; Gene; Microbiology; Virology; Pathogen; Genetics","score_opus":0.035964482174029644,"score_gpt":0.29261224372358163,"score_spread":0.256647761549552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152042796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816812,0.00027443908,0.0006710856,0.00002230318,0.00017770813,0.00054053025,0.00000999928,0.00010504374,0.01651769],"genre_scores_gemma":[0.99856347,0.0008721238,0.000068173846,0.00017341255,0.00005405583,0.00004728503,0.0000359822,0.000015748146,0.00016973619],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990767,0.000072353156,0.00029230068,0.0001970469,0.00015647819,0.00020508308],"domain_scores_gemma":[0.99919665,0.000034062265,0.00015433665,0.0002931643,0.0001762068,0.00014556074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022053077,0.00016274616,0.00027172634,0.00017211915,0.00024549855,0.000023030947,0.000023183446,0.00010452558,0.000111160036],"category_scores_gemma":[0.00011123186,0.0001411665,0.000099936486,0.00028435775,0.00008759545,0.00016287177,0.00004502715,0.00021881006,0.000011889719],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030875686,0.0008920308,0.72006273,0.00014546629,0.00029616622,0.0002690972,0.00031150097,0.000012936194,0.26575768,0.00016725177,0.000039843224,0.011736549],"study_design_scores_gemma":[0.0029748594,0.0011731299,0.87047404,0.00023126429,0.00026271262,0.0013082093,0.000119902,0.00015421411,0.116736464,0.00018809985,0.006125493,0.0002516335],"about_ca_topic_score_codex":0.003772383,"about_ca_topic_score_gemma":0.00004621934,"teacher_disagreement_score":0.1504113,"about_ca_system_score_codex":0.00010570657,"about_ca_system_score_gemma":0.00013372098,"threshold_uncertainty_score":0.5756602},"labels":[],"label_agreement":null},{"id":"W2152277109","doi":"10.1128/iai.01510-07","title":"<i>Aspergillus fumigatus</i> Stimulates Leukocyte Adhesion Molecules and Cytokine Production by Endothelial Cells In Vitro and during Invasive Pulmonary Disease","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Institutes of Health; American Heart Association","keywords":"Aspergillus fumigatus; Biology; Endothelial stem cell; Cell adhesion molecule; Immunology; Cytokine; Tumor necrosis factor alpha; Microbiology; Cell biology; In vitro; Biochemistry","score_opus":0.010750056761416986,"score_gpt":0.22737073947107084,"score_spread":0.21662068270965384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152277109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980325,0.001293341,0.000009730798,0.00010272833,0.000072769704,0.00030860933,0.00002608061,0.000041733107,0.00011250394],"genre_scores_gemma":[0.9921717,0.0073515573,0.000024356583,0.000067968234,0.000046721318,0.000009412755,0.00003794169,0.000011938326,0.00027837305],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99916804,0.00009935144,0.00019033327,0.00027243674,0.0001118658,0.00015795192],"domain_scores_gemma":[0.99953926,0.000049601487,0.000049876457,0.00016311702,0.00005527283,0.00014288454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012577667,0.00014824556,0.0002104328,0.00009075688,0.00028996475,0.0000144145515,0.00001693017,0.00006870769,0.000009745914],"category_scores_gemma":[0.00018207259,0.0001335597,0.000032284457,0.00011857426,0.00022868377,0.0002060962,0.000051377956,0.00024756338,0.0000019978925],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001600741,0.0001640315,0.21195959,0.0001835671,0.000008251438,0.000039436483,0.00016360832,0.0000040643413,0.7850635,0.0000012538187,0.000020180589,0.000791783],"study_design_scores_gemma":[0.00069046015,0.00007454693,0.5563213,0.000058801303,0.000020349325,0.00007224213,0.000052576168,0.000064752516,0.44240877,0.000023384096,0.00012532195,0.00008748966],"about_ca_topic_score_codex":0.00070690096,"about_ca_topic_score_gemma":0.000057337205,"teacher_disagreement_score":0.34436172,"about_ca_system_score_codex":0.00005763777,"about_ca_system_score_gemma":0.000045017503,"threshold_uncertainty_score":0.5446407},"labels":[],"label_agreement":null},{"id":"W2152335508","doi":"10.1128/iai.01618-06","title":"Survival of<i>Chlamydia muridarum</i>within Dendritic Cells","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Chlamydia; Biology; Chlamydia trachomatis; Immunology; Chlamydiaceae; Antigen; Immune system; Immunity; Chlamydiales; Virology; Immunopathology; Microbiology","score_opus":0.023511494524682874,"score_gpt":0.29866191014994975,"score_spread":0.2751504156252669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152335508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.984989,0.00047610828,0.001104808,0.000024563584,0.001845509,0.00018642921,0.000007511589,0.00007456633,0.01129153],"genre_scores_gemma":[0.9985815,0.00015444914,0.00004006686,0.000014140818,0.00003763332,0.0000053696103,0.000012181689,0.000011845075,0.0011428124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987918,0.00035783328,0.00033051762,0.00020081441,0.00004811804,0.00027087756],"domain_scores_gemma":[0.9989497,0.0003581577,0.00010284688,0.00033601373,0.00022381905,0.000029480814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001767872,0.00012618501,0.00020961437,0.00027244014,0.00029941957,0.000015223042,0.000081350925,0.00019469726,0.000537955],"category_scores_gemma":[0.00035285996,0.00011973147,0.00007225184,0.0003197842,0.00042009802,0.00015302663,0.000081420316,0.00063866214,0.00023858565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010233702,0.00031201544,0.06516498,0.000033132757,0.00010541297,0.0000016367128,0.0003580718,0.000007583521,0.92459095,0.0010793776,0.0001453474,0.008099185],"study_design_scores_gemma":[0.00045782805,0.00014568897,0.37612817,0.00001127979,0.000015807405,0.0000757065,0.00016280118,9.096494e-7,0.61597997,0.0001468134,0.006775776,0.00009925472],"about_ca_topic_score_codex":0.0017825447,"about_ca_topic_score_gemma":0.0002243168,"teacher_disagreement_score":0.31096318,"about_ca_system_score_codex":0.00004421599,"about_ca_system_score_gemma":0.000049252074,"threshold_uncertainty_score":0.58902305},"labels":[],"label_agreement":null},{"id":"W2152355246","doi":"10.1128/iai.73.6.3773-3777.2005","title":"Involvement of Sortase Anchoring of Cell Wall Proteins in Biofilm Formation by <i>Streptococcus</i> <i>mutans</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research","keywords":"Sortase; Streptococcus mutans; Biofilm; Biology; Microbiology; Cell wall; Bacterial protein; Streptococcus; Bacteria; Biochemistry; Genetics","score_opus":0.007019120241132973,"score_gpt":0.21358671329682966,"score_spread":0.2065675930556967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152355246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991547,0.00012362322,0.00029122835,0.000031603653,0.000019265495,0.00017090689,0.000024352625,0.000004196225,0.0001801089],"genre_scores_gemma":[0.9992033,0.0003042582,0.00007563461,0.000060320916,0.000022497958,0.000012465903,0.0002947404,0.0000036061797,0.000023171113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99955,0.00003109563,0.00021605515,0.0000833851,0.000047134352,0.00007235523],"domain_scores_gemma":[0.99971145,0.000002552709,0.00011121207,0.000098687444,0.000053448086,0.00002264184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007738721,0.00006884063,0.00008327522,0.000028725055,0.000025239182,0.000004754691,0.00003316404,0.0000812323,0.00000839225],"category_scores_gemma":[0.000012414028,0.0000638901,0.000024675757,0.00008529656,0.00003417873,0.000015802418,0.00003127161,0.000064612905,3.2297353e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025752266,0.00007561005,0.011482307,0.00006833716,0.0000036821327,1.8445986e-8,0.000064113505,0.0000066381485,0.9856338,0.000004148944,0.00007067641,0.0025649248],"study_design_scores_gemma":[0.000399748,0.00013690053,0.01239399,0.000016251339,0.0000037170555,5.844192e-7,0.000018134468,0.00007175008,0.9837524,0.000010094565,0.003130699,0.000065682536],"about_ca_topic_score_codex":0.00016163204,"about_ca_topic_score_gemma":0.000059068385,"teacher_disagreement_score":0.0030600226,"about_ca_system_score_codex":0.000010526853,"about_ca_system_score_gemma":0.0000096464655,"threshold_uncertainty_score":0.26053625},"labels":[],"label_agreement":null},{"id":"W2152415629","doi":"10.1128/iai.01888-14","title":"Host Defense Peptide Resistance Contributes to Colonization and Maximal Intestinal Pathology by Crohn's Disease-Associated Adherent-Invasive Escherichia coli","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Crohn's disease; Escherichia coli; Microbiology; Disease; Colonization; Immunology; Crohn disease; Pathology; Genetics; Medicine; Gene","score_opus":0.00843298606251094,"score_gpt":0.24533349586836953,"score_spread":0.23690050980585858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152415629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959573,0.0007233467,0.0021615098,0.00035247576,0.00006793608,0.00029303896,0.000039849867,0.000026671072,0.0003778749],"genre_scores_gemma":[0.9979422,0.0006765289,0.000121819045,0.00047837893,0.00002845586,0.0000762889,0.00011184196,0.000013699417,0.00055076636],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891025,0.00038634514,0.0001501639,0.00024877398,0.0000758943,0.00022856513],"domain_scores_gemma":[0.9992285,0.00010428305,0.0000793472,0.00015991881,0.00029491613,0.00013304103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031802952,0.00014474452,0.00016002265,0.000040163293,0.0003522093,0.000057442845,0.000058898466,0.000096400945,0.000005826242],"category_scores_gemma":[0.0038463993,0.00014745274,0.000028989874,0.0001569659,0.00020147723,0.00000869174,0.00019608428,0.00015498558,0.0000032094943],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006821298,0.00019264313,0.379156,0.000058634836,0.00009393574,0.0000060069206,0.00009682312,0.0000042074794,0.61211896,0.00018482836,0.007019387,0.0003864421],"study_design_scores_gemma":[0.0008519081,0.0004557522,0.9724213,0.00004348419,0.000029350176,0.000002696361,0.00005561468,0.00005288346,0.011764988,0.00011870478,0.01402327,0.00018005598],"about_ca_topic_score_codex":0.00015623462,"about_ca_topic_score_gemma":0.0013817981,"teacher_disagreement_score":0.60035396,"about_ca_system_score_codex":0.000035878158,"about_ca_system_score_gemma":0.000056859288,"threshold_uncertainty_score":0.6012948},"labels":[],"label_agreement":null},{"id":"W2152544440","doi":"10.1128/iai.00090-10","title":"<i>Salmonella enterica</i> Serovar Enteritidis <i>tatB</i> and <i>tatC</i> Mutants Are Impaired in Caco-2 Cell Invasion <i>In Vitro</i> and Show Reduced Systemic Spread in Chickens","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Wellcome Trust; Danmarks Tekniske Universitet; University of Saskatchewan","keywords":"Biology; Salmonella enteritidis; Microbiology; Salmonella enterica; Twin-arginine translocation pathway; Salmonella; Mutant; Biofilm; Serotype; Pathogen; Virology; Bacteria; Gene; Signal peptide; Genetics; Peptide sequence","score_opus":0.014395048206479329,"score_gpt":0.21835203697098401,"score_spread":0.2039569887645047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152544440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982431,0.0004953724,6.567942e-7,0.0002985474,0.00026980595,0.0003499285,0.00004043055,0.00004461422,0.00025754835],"genre_scores_gemma":[0.99677515,0.0026472774,0.000015648044,0.00040947198,0.000053444655,0.000031818923,0.000042826618,0.0000034800642,0.000020852242],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99808985,0.0004895006,0.00048009682,0.00045612268,0.000089261295,0.00039515045],"domain_scores_gemma":[0.9992639,0.00027996095,0.00016991972,0.00011434062,0.000031185344,0.00014068284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007114936,0.00026464922,0.00047691073,0.00007325646,0.0001418554,0.000066955035,0.00010951938,0.0002723917,0.000016611142],"category_scores_gemma":[0.000092989,0.00014817936,0.000049749455,0.0003717028,0.00015148659,0.0002270157,0.00016060125,0.00061503303,0.0000034575214],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009852321,0.00011759547,0.40394676,0.00002703083,0.00000193849,0.000009868053,0.00018441897,3.3605275e-7,0.591997,0.0000013176817,0.000017424209,0.0035977855],"study_design_scores_gemma":[0.0009318107,0.0001724749,0.95988864,0.0001277643,0.0000073608603,0.00026562583,0.0006166819,0.000079887395,0.03720175,0.00009472085,0.0003457498,0.0002675316],"about_ca_topic_score_codex":0.011047324,"about_ca_topic_score_gemma":0.012777154,"teacher_disagreement_score":0.5559419,"about_ca_system_score_codex":0.000033886125,"about_ca_system_score_gemma":0.0000091656575,"threshold_uncertainty_score":0.9955382},"labels":[],"label_agreement":null},{"id":"W2152624601","doi":"10.1128/iai.01442-06","title":"Induction of Monocyte Chemotactic Protein 1 in Colonic Epithelial Cells by <i>Entamoeba histolytica</i> Is Mediated via the Phosphatidylinositol 3-Kinase/p65 Pathway","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; McGill University","keywords":"Biology; Chemotaxis; Phosphatidylinositol; Entamoeba histolytica; Cell biology; Protein kinase A; Chemokine; Kinase; Monocyte; Signal transduction; Molecular biology; Protein kinase B; Mitogen-activated protein kinase; Inflammation; Biochemistry; Immunology; Receptor","score_opus":0.009771835486804523,"score_gpt":0.2464345016325111,"score_spread":0.23666266614570658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152624601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674946,0.00019553135,0.00042778644,0.00021628443,0.00027357484,0.00081966154,0.000015304242,0.00004094169,0.0012614633],"genre_scores_gemma":[0.9991273,0.00017252823,0.000043680706,0.00016760248,0.00003733019,0.00003786812,0.000031727333,0.000015568945,0.00036638422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989774,0.00009525571,0.0003748678,0.0001728386,0.00016321274,0.00021640693],"domain_scores_gemma":[0.9992618,0.00009756035,0.00019306144,0.00026304094,0.00010666056,0.00007789809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046459967,0.00016537932,0.00024854642,0.00013873901,0.00021147383,0.000011779083,0.00003904022,0.00016065649,0.00013263957],"category_scores_gemma":[0.00006707424,0.00012500478,0.00007460902,0.00042223735,0.00016194758,0.00013065469,0.0000322973,0.00041607136,0.000029043991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092524034,0.0031238005,0.060971774,0.00013758766,0.00024003338,0.000021689886,0.0014383319,0.0000021103785,0.9010802,0.00008095892,0.00047693154,0.031501323],"study_design_scores_gemma":[0.0028657499,0.0007588772,0.0990466,0.00006330098,0.000088768844,0.0000738429,0.00013429127,0.0001532921,0.88906187,0.00008064513,0.0075400993,0.00013264782],"about_ca_topic_score_codex":0.0066716853,"about_ca_topic_score_gemma":0.00021806528,"teacher_disagreement_score":0.038074825,"about_ca_system_score_codex":0.0002657931,"about_ca_system_score_gemma":0.000080836704,"threshold_uncertainty_score":0.99994296},"labels":[],"label_agreement":null},{"id":"W2152668112","doi":"10.1128/iai.00093-07","title":"Modulation of Intestinal Goblet Cell Function during Infection by an Attaching and Effacing Bacterial Pathogen","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital","funders":"University of British Columbia","keywords":"Citrobacter rodentium; Biology; Goblet cell; Microbiology; Mucin 2; Immunostaining; Pathogen; Intestinal mucosa; Enteropathogenic Escherichia coli; Immunology; Epithelium; Escherichia coli; Immunohistochemistry; Gene expression; Gene","score_opus":0.009890072433976035,"score_gpt":0.2668834948603048,"score_spread":0.2569934224263288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152668112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912466,0.00009863531,0.008136827,0.0000036528736,0.00010447385,0.00010517403,0.000004112202,0.000016160391,0.0002843767],"genre_scores_gemma":[0.99943954,0.00024781853,0.00010024199,0.000007580622,0.00008978497,0.0000043286573,0.0000741886,0.0000082571905,0.000028275836],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99939454,0.000117765194,0.00015343705,0.0001452087,0.000065515254,0.00012351532],"domain_scores_gemma":[0.99966663,0.000017157405,0.00008093151,0.000102910555,0.000084685606,0.00004767316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048912544,0.000090042806,0.000083441075,0.00005733901,0.00024294213,0.000025125846,0.000018655968,0.00008110345,0.0000051027027],"category_scores_gemma":[0.00011502861,0.000092911534,0.0000223065,0.00007430842,0.000056832585,0.00002617548,0.00008237224,0.0001305626,3.0491023e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014855027,0.000050926243,0.16585612,0.000053346022,0.0000122995325,1.0756632e-7,0.00006872958,0.000027559325,0.8300993,0.0000020094753,0.000005547543,0.0036755311],"study_design_scores_gemma":[0.00043658138,0.0004813118,0.7630873,0.000012020231,0.000011662191,0.000009131352,0.000035199875,0.00022713677,0.23517294,0.000011918913,0.0004308027,0.00008399634],"about_ca_topic_score_codex":0.0009770783,"about_ca_topic_score_gemma":0.00026316763,"teacher_disagreement_score":0.5972312,"about_ca_system_score_codex":0.000020063835,"about_ca_system_score_gemma":0.00001145292,"threshold_uncertainty_score":0.37888226},"labels":[],"label_agreement":null},{"id":"W2152760152","doi":"10.1128/iai.00212-07","title":"<i>Pasteurella multocida</i> Expresses Two Lipopolysaccharide Glycoforms Simultaneously, but Only a Single Form Is Required for Virulence: Identification of Two Acceptor-Specific Heptosyl I Transferases","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Australian Research Council","keywords":"Pasteurella multocida; Virulence; Biology; Identification (biology); Microbiology; Lipopolysaccharide; Virulence factor; Bacteria; Biochemistry; Genetics; Immunology; Gene","score_opus":0.02884922290752415,"score_gpt":0.31353831369427015,"score_spread":0.284689090786746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152760152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97724724,0.0012001653,0.01934992,0.000037587004,0.0005736433,0.0008377846,0.00027410762,0.00011264291,0.00036693245],"genre_scores_gemma":[0.9979642,0.0010575386,0.00005487606,0.00007088432,0.00007506031,0.000045532393,0.00017013735,0.000028005607,0.0005337797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824166,0.00013227196,0.0007203679,0.0003551511,0.00007842847,0.00047214303],"domain_scores_gemma":[0.99837834,0.0004886014,0.00022221656,0.00039856232,0.00043944427,0.000072855015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007355197,0.00025606592,0.00034171046,0.00030843905,0.00073104096,0.000086715525,0.00016451819,0.00022281759,0.0005503856],"category_scores_gemma":[0.00016668615,0.00023961795,0.00021852233,0.00027271017,0.00038856943,0.0004029909,0.00007230299,0.00031699255,0.000057612546],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070861465,0.00071343494,0.002317696,0.00009501532,0.000110323155,9.273858e-7,0.00055960746,0.0000152398925,0.96684206,0.00056428235,0.00040802368,0.02766477],"study_design_scores_gemma":[0.0027416213,0.0004650006,0.0014310234,0.00004842459,0.00004782523,0.00008326688,0.00048742062,0.000026024969,0.98043394,0.00036430132,0.013608648,0.00026250305],"about_ca_topic_score_codex":0.003423511,"about_ca_topic_score_gemma":0.0006683603,"teacher_disagreement_score":0.027402267,"about_ca_system_score_codex":0.00008938072,"about_ca_system_score_gemma":0.00008423566,"threshold_uncertainty_score":0.97713363},"labels":[],"label_agreement":null},{"id":"W2152794219","doi":"10.1128/iai.72.9.5322-5330.2004","title":"Encapsulated<i>Streptococcus suis</i>Inhibits Activation of Signaling Pathways Involved in Phagocytosis","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University Health Centre","funders":"","keywords":"Phosphorylation; Phagocytosis; Biology; Protein kinase B; Tyrosine phosphorylation; Streptococcus suis; Protein kinase C; Kinase; Phosphatase; Protein tyrosine phosphatase; Signal transduction; Cell biology; Biochemistry; Microbiology; Virulence","score_opus":0.035113887417119405,"score_gpt":0.28116129127514006,"score_spread":0.24604740385802065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152794219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99799585,0.000050252773,0.0002521135,0.000059287388,0.00007256301,0.0004714016,0.0000039361444,0.000062870546,0.0010317136],"genre_scores_gemma":[0.99963194,0.000098098506,0.00007693655,0.000058587477,0.00002318729,0.00004923537,0.000036048183,0.000010779532,0.000015197],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992328,0.0000531675,0.00029920824,0.00015557345,0.000102464306,0.00015676126],"domain_scores_gemma":[0.99946845,0.00004650844,0.00010820394,0.000169192,0.00011367296,0.0000939982],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015838,0.00013275909,0.00023115773,0.000254519,0.00010768529,0.000013547993,0.00001804219,0.00011551152,0.00007371063],"category_scores_gemma":[0.00015720751,0.00012066922,0.00007537646,0.00045759912,0.000061746905,0.00017837631,0.000024586498,0.00022514144,0.0000071775376],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007731988,0.0008553893,0.67722183,0.00005745896,0.00006385185,0.0000028390957,0.00036237558,0.00018918084,0.31691304,0.000210153,0.00000425731,0.0040422725],"study_design_scores_gemma":[0.0027742886,0.00035569054,0.45733842,0.00021710609,0.000032911717,0.000008463089,0.00009657819,0.000031334992,0.5385242,0.0004929076,0.0000524248,0.00007567552],"about_ca_topic_score_codex":0.00439348,"about_ca_topic_score_gemma":0.00012545327,"teacher_disagreement_score":0.22161116,"about_ca_system_score_codex":0.00017234818,"about_ca_system_score_gemma":0.00009838051,"threshold_uncertainty_score":0.6641657},"labels":[],"label_agreement":null},{"id":"W2152869773","doi":"10.1128/iai.69.5.3315-3322.2001","title":"Recruitment of Cytoskeletal and Signaling Proteins to Enteropathogenic and Enterohemorrhagic <i>Escherichia coli</i> Pedestals","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Intimin; Biology; Enteropathogenic Escherichia coli; Phosphorylation; Signal transducing adaptor protein; Tyrosine phosphorylation; Cell biology; Microbiology; Actin; Signal transduction; Virulence; Escherichia coli; Enterobacteriaceae; Biochemistry","score_opus":0.030900467274246696,"score_gpt":0.2994824786375971,"score_spread":0.26858201136335036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152869773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997514,0.00082339504,0.00068827317,0.000076814234,0.000034013232,0.00051239075,0.000006877718,0.000009243646,0.00033498046],"genre_scores_gemma":[0.9967808,0.0024900862,0.00034651312,0.00012915861,0.000033139568,0.00008802448,0.000007752479,0.000009042245,0.000115454735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993094,0.00013876264,0.00014628093,0.0001807114,0.00007382694,0.00015097136],"domain_scores_gemma":[0.9996402,0.00001449842,0.000049541624,0.00013488419,0.00007205855,0.000088818626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027022773,0.00011410122,0.00013862905,0.00004306898,0.00014179786,0.000026063206,0.000037603997,0.00005490407,0.0000061147352],"category_scores_gemma":[0.000107356245,0.00010679373,0.000028982091,0.0000891368,0.00010303621,0.00000764058,0.00022743105,0.00009899886,7.1670354e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099307785,0.00007278304,0.046917066,0.0000492106,0.000038576676,0.0000011493837,0.00014355291,0.0000016642432,0.9479238,0.000010120959,0.000014973966,0.0047278227],"study_design_scores_gemma":[0.0016166618,0.0034034722,0.3160842,0.00009576993,0.00004868912,0.000082815845,0.00042738553,0.00008140515,0.6574469,0.000058531958,0.020276668,0.00037750584],"about_ca_topic_score_codex":0.00020427916,"about_ca_topic_score_gemma":0.000103827275,"teacher_disagreement_score":0.2904769,"about_ca_system_score_codex":0.000009642063,"about_ca_system_score_gemma":0.000018272747,"threshold_uncertainty_score":0.43549216},"labels":[],"label_agreement":null},{"id":"W2152875909","doi":"10.1128/iai.01444-13","title":"Identification of a Crucial Residue Required for Staphylococcus aureus LukAB Cytotoxicity and Receptor Recognition","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"School of Medicine, New York University; National Institutes of Health; National Institute of Allergy and Infectious Diseases; National Health and Medical Research Council; NYU Langone Medical Center; York University; National Institute of General Medical Sciences; American Heart Association","keywords":"Staphylococcus aureus; Biology; Cytotoxicity; Microbiology; Residue (chemistry); Receptor; Computational biology; Bacteria; Biochemistry; In vitro; Genetics","score_opus":0.024067933253506476,"score_gpt":0.28240913859418526,"score_spread":0.2583412053406788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152875909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952875,0.00010550984,0.0025023997,0.00023645257,0.00015113708,0.0013115009,0.000062615174,0.000055530058,0.0002873797],"genre_scores_gemma":[0.99845433,0.0003765247,0.000577871,0.00009540113,0.00008993933,0.0001298217,0.000058591686,0.000016133312,0.0002014132],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901223,0.00009789886,0.000425025,0.00020188095,0.00010628011,0.00015668872],"domain_scores_gemma":[0.9988409,0.00012595502,0.00025034635,0.00021937315,0.00048087328,0.00008251919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039355972,0.00012902501,0.00026100472,0.00015382605,0.00021190023,0.000044008262,0.00003398863,0.0001533902,0.00009448059],"category_scores_gemma":[0.00070685905,0.00012607695,0.00007062276,0.00018011717,0.0002103421,0.0002643081,0.000032687556,0.00016835134,0.000014460173],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040140853,0.00014294054,0.011158545,0.0002696138,0.00004185126,1.6745747e-7,0.00025489298,3.428327e-7,0.97223127,0.0000512988,0.0014044809,0.014043177],"study_design_scores_gemma":[0.0017203888,0.00049027486,0.50636774,0.00017326722,0.000079827,0.0000063255125,0.00018440899,0.00011863376,0.48850995,0.0013507097,0.0008243099,0.00017417007],"about_ca_topic_score_codex":0.0010460886,"about_ca_topic_score_gemma":0.00010097663,"teacher_disagreement_score":0.4952092,"about_ca_system_score_codex":0.000057542806,"about_ca_system_score_gemma":0.000051958108,"threshold_uncertainty_score":0.5141269},"labels":[],"label_agreement":null},{"id":"W2153041745","doi":"10.1128/iai.00686-06","title":"Effect of Corticosteroids and Neuropeptides on the Expression of Defensins in Bovine Tracheal Epithelial Cells","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Beef Cattle Research Council","keywords":"Dexamethasone; Biology; Antimicrobial peptides; Lipopolysaccharide; Endocrinology; Internal medicine; Innate immune system; Defensin; Beta defensin; Immunology; Antimicrobial; Microbiology; Medicine; Immune system","score_opus":0.0073063087287098235,"score_gpt":0.21530795893232255,"score_spread":0.20800165020361272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153041745","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990922,0.00012532253,0.00001528139,0.00002574745,0.00011633472,0.00012851112,0.000015183358,0.000008988681,0.00047239315],"genre_scores_gemma":[0.99976504,0.000095456446,0.0000025622508,0.000026000922,0.000008653321,0.000001945839,0.000006577922,0.000005110204,0.0000886777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999213,0.00041933634,0.00018154184,0.000080103215,0.000014637531,0.000091387534],"domain_scores_gemma":[0.99943405,0.00034466237,0.00009854345,0.00010060452,0.000017152395,0.00000496375],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025004856,0.0000886405,0.00018096963,0.00005984062,0.00009592669,0.0000061523633,0.000029700936,0.00007421448,0.000028395078],"category_scores_gemma":[0.00003748709,0.00005646584,0.000035153756,0.000051966847,0.00027568775,0.00005114444,0.000039664817,0.00020055038,0.0000029158452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037264565,0.00009688204,0.012973078,0.00003489453,0.0000059123986,3.0533405e-7,0.00010483625,0.000007763664,0.98273396,0.000085314605,0.00008104861,0.003503363],"study_design_scores_gemma":[0.0006000192,0.00093967747,0.1409942,0.000046899797,0.0000108459235,0.000010809937,0.000029122815,0.0000033153499,0.85708815,0.000024469973,0.00020823556,0.00004426023],"about_ca_topic_score_codex":0.0023846962,"about_ca_topic_score_gemma":0.00010192713,"teacher_disagreement_score":0.12802114,"about_ca_system_score_codex":0.000005248958,"about_ca_system_score_gemma":0.0000046165933,"threshold_uncertainty_score":0.3604963},"labels":[],"label_agreement":null},{"id":"W2153083203","doi":"10.1128/iai.72.10.5565-5573.2004","title":"A Bicistronic DNA Vaccine Containing Apical Membrane Antigen 1 and Merozoite Surface Protein 4/5 Can Prime Humoral and Cellular Immune Responses and Partially Protect Mice against Virulent<i>Plasmodium chabaudi adami</i>DS Malaria","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Plasmodium chabaudi; Antigen; Immune system; Virulence; Virology; DNA vaccination; Microbiology; DNA; Merozoite surface protein; Malaria vaccine; Immunology; Gene; Genetics; Immunization; Plasmodium falciparum; Malaria","score_opus":0.013950528447751496,"score_gpt":0.2508982624908443,"score_spread":0.2369477340430928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153083203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921357,0.0022403153,0.00043024254,0.0030175946,0.00004631917,0.0019161836,0.000020102207,0.000092508366,0.00010102431],"genre_scores_gemma":[0.9983452,0.00092899037,0.00018656094,0.00014043736,0.000058868525,0.000079198275,0.00003416693,0.00003167257,0.00019491618],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99794024,0.00046594918,0.00041280637,0.00040913202,0.00026039305,0.00051145593],"domain_scores_gemma":[0.99896526,0.00009483996,0.00014968333,0.00030227922,0.0001447261,0.00034319714],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010948123,0.00031881325,0.00056663906,0.00015889764,0.000540022,0.00014614999,0.0000637978,0.00019283709,0.00003270165],"category_scores_gemma":[0.00038989828,0.00028372367,0.00005980242,0.000198564,0.00023440331,0.00020821123,0.00017854515,0.00076633703,0.0000025303534],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005009828,0.00020190416,0.013344388,0.00022866167,0.00019128498,0.00006016242,0.00045866784,0.000007610128,0.9778358,0.0003624572,0.0000016993647,0.0022975726],"study_design_scores_gemma":[0.015559175,0.0036815903,0.5355047,0.00046175078,0.00014190028,0.00032188374,0.0002453555,0.0008271587,0.44192097,0.0001262005,0.0007518577,0.00045746964],"about_ca_topic_score_codex":0.0044159233,"about_ca_topic_score_gemma":0.0006274787,"teacher_disagreement_score":0.5359148,"about_ca_system_score_codex":0.00008826503,"about_ca_system_score_gemma":0.00027740444,"threshold_uncertainty_score":0.9999615},"labels":[],"label_agreement":null},{"id":"W2153109174","doi":"10.1128/iai.00785-12","title":"Altered Toll-Like Receptor 9 Signaling in Mycobacterium avium subsp. paratuberculosis-Infected Bovine Monocytes Reveals Potential Therapeutic Targets","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Luonnontieteiden ja Tekniikan Tutkimuksen Toimikunta; Beef Cattle Research Council","keywords":"Paratuberculosis; Biology; TLR9; Microbiology; Mycobacterium; Immune system; Toll-Like Receptor 9; Innate immune system; Immunology; Bacteria; Gene; Genetics; Gene expression; DNA methylation","score_opus":0.025185243189802097,"score_gpt":0.29452222655503457,"score_spread":0.2693369833652325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153109174","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951167,0.0024309782,0.00009451007,0.0003112573,0.0008682119,0.00055765256,0.000019300825,0.00012149298,0.00047987374],"genre_scores_gemma":[0.9963487,0.002108452,0.0000979849,0.00047419526,0.0004692979,0.0000881559,0.0002132984,0.000031910302,0.00016804456],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979447,0.00049646926,0.00042353926,0.00024626878,0.00023812983,0.0006509025],"domain_scores_gemma":[0.998831,0.00017013638,0.00011085056,0.00033988472,0.00016344858,0.00038469254],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00074738415,0.0002688684,0.00043843617,0.00031227936,0.0002134142,0.000086396365,0.00006539271,0.00020593239,0.001285069],"category_scores_gemma":[0.00024264408,0.00023862797,0.0001292041,0.00040165463,0.000084936655,0.0005062157,0.0000881104,0.00059005735,0.00010939118],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005443183,0.0006200282,0.5929672,0.0001370601,0.000096869095,0.0000041932667,0.0003209348,0.0000016243449,0.40183392,0.000015789183,0.0008955786,0.0025624833],"study_design_scores_gemma":[0.0018316814,0.00058800756,0.95258427,0.00012465188,0.00009467482,0.00008159564,0.00007853574,0.00007951055,0.03811972,0.000038901944,0.0061140703,0.00026441235],"about_ca_topic_score_codex":0.0012708835,"about_ca_topic_score_gemma":0.00005454853,"teacher_disagreement_score":0.3637142,"about_ca_system_score_codex":0.00015163182,"about_ca_system_score_gemma":0.0000637109,"threshold_uncertainty_score":0.9996279},"labels":[],"label_agreement":null},{"id":"W2153315176","doi":"10.1128/iai.00328-12","title":"Impaired Innate Immunity in Mice Deficient in Interleukin-1 Receptor-Associated Kinase 4 Leads to Defective Type 1 T Cell Responses, B Cell Expansion, and Enhanced Susceptibility to Infection with Toxoplasma gondii","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Universidade Federal de Minas Gerais","keywords":"Biology; Innate immune system; Immunology; Toxoplasma gondii; Immunity; Receptor; Immune system; Antibody; Genetics","score_opus":0.015519298244080859,"score_gpt":0.2705749067880215,"score_spread":0.2550556085439406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153315176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733424,0.0004931279,0.000071268194,0.00006233076,0.00047095463,0.0010377808,0.000032540676,0.00010183098,0.00039589513],"genre_scores_gemma":[0.9988849,0.00032861275,0.000048153757,0.00009414684,0.000010229337,0.000128285,0.000057230784,0.000026534828,0.0004218986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99593985,0.0023263204,0.00045557047,0.0004385594,0.0000846375,0.00075507193],"domain_scores_gemma":[0.9985045,0.0005802399,0.00014842342,0.00035335316,0.00028383904,0.00012961811],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0021217833,0.00035922273,0.00047844573,0.0007804862,0.00045017013,0.000041098727,0.00011142578,0.00034297552,0.00007682933],"category_scores_gemma":[0.0012965495,0.00032971698,0.00005062357,0.0013059461,0.00024554017,0.00034133706,0.0004149192,0.0011130907,0.00013519375],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022981842,0.00090645615,0.3779344,0.000042114785,0.000026807911,8.8308565e-7,0.006609701,0.000026215159,0.6112216,0.0000057106113,0.00011299207,0.0008149218],"study_design_scores_gemma":[0.0016694898,0.0016650709,0.6201831,0.00008331394,0.000013761426,0.000009876609,0.00080778997,0.0000015996799,0.37453914,0.000007794617,0.00075855653,0.0002604859],"about_ca_topic_score_codex":0.013261008,"about_ca_topic_score_gemma":0.024588022,"teacher_disagreement_score":0.24224874,"about_ca_system_score_codex":0.0007362371,"about_ca_system_score_gemma":0.00011983508,"threshold_uncertainty_score":0.9999155},"labels":[],"label_agreement":null},{"id":"W2153348025","doi":"10.1128/iai.01364-09","title":"Modulation of the Local Neutrophil Response by a Novel Hyaluronic Acid-Binding Peptide Reduces Bacterial Burden during Staphylococcal Wound Infection","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"CXCL1; Staphylococcus aureus; Microbiology; TLR2; Chemokine; Antibiotics; Antimicrobial peptides; Biology; Immunology; Innate immune system; Immune system; Sepsis; Antimicrobial; Staphylococcal infections; Medicine; Bacteria","score_opus":0.007304106215447782,"score_gpt":0.22301250538337253,"score_spread":0.21570839916792475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153348025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764454,0.00005760914,0.00017088393,0.00015330083,0.0015260758,0.00028078246,0.000014095521,0.00006026499,0.000092460155],"genre_scores_gemma":[0.99927604,0.000050611336,0.000006178995,0.0000074598147,0.000058859227,0.000019801542,0.000060263512,0.000015254472,0.00050551665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985519,0.0005933223,0.00038385822,0.00018749917,0.000054308133,0.00022909444],"domain_scores_gemma":[0.9991681,0.0001197804,0.0002746248,0.0003077641,0.00011011744,0.000019608106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070315937,0.00017901351,0.00019938753,0.00017092215,0.0007033102,0.000044344746,0.000101435486,0.00033713452,0.00018026459],"category_scores_gemma":[0.00028020225,0.00014903644,0.00010720392,0.000222508,0.0003659384,0.0003654724,0.00011950054,0.0007376609,0.000026374008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017623438,0.00008174327,0.003312248,0.000016842967,0.000061309576,8.4835726e-8,0.00047137093,0.00004117627,0.9919488,0.000044989694,0.000044892284,0.0022142387],"study_design_scores_gemma":[0.0010787344,0.0001393313,0.39118844,0.000023656406,0.00002015106,0.0000546915,0.000055452507,0.000046769586,0.6032077,0.000015919286,0.0040614665,0.00010770215],"about_ca_topic_score_codex":0.0015984809,"about_ca_topic_score_gemma":0.0001292946,"teacher_disagreement_score":0.38874108,"about_ca_system_score_codex":0.00007846676,"about_ca_system_score_gemma":0.00008231918,"threshold_uncertainty_score":0.6077529},"labels":[],"label_agreement":null},{"id":"W2153362541","doi":"10.1128/iai.02167-14","title":"Distinct Regions of NLRP1B Are Required To Respond to Anthrax Lethal Toxin and Metabolic Inhibition","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Mutagenesis; Mutant; Toxin; Receptor; Cell biology; Genetics; Gene","score_opus":0.018989122542521955,"score_gpt":0.28394254802711566,"score_spread":0.2649534254845937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153362541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956807,0.000100913145,0.0028337021,0.00024456618,0.00008549959,0.00015199531,0.000021649754,0.000007352193,0.00087362365],"genre_scores_gemma":[0.9993135,0.00015865835,0.0000919878,0.00011457882,0.00009093474,0.000012797651,0.000024617804,0.000007933541,0.00018502916],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993387,0.00016713384,0.00013481134,0.00016360513,0.00006799707,0.00012775009],"domain_scores_gemma":[0.99951434,0.000019876818,0.000043938075,0.00020917902,0.00009644289,0.000116208896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038936987,0.00008343994,0.0001340634,0.000076909084,0.0001371358,0.000024603403,0.000034904595,0.00008594531,0.000014992292],"category_scores_gemma":[0.0003834607,0.00007812577,0.00003003861,0.00013408781,0.00007896769,0.000006520186,0.00012342188,0.00007377726,0.0000039360916],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002531173,0.000043057025,0.003984718,0.000018721033,0.000011000465,2.6134973e-7,0.00009697366,0.0000014670198,0.9834184,0.00023084498,0.0002661442,0.011675278],"study_design_scores_gemma":[0.00059945666,0.0008109932,0.5094263,0.000035899724,0.000012072659,0.000018048422,0.00005224417,0.000013989566,0.3926613,0.00016822385,0.096036226,0.00016525871],"about_ca_topic_score_codex":0.00043365252,"about_ca_topic_score_gemma":0.00031514792,"teacher_disagreement_score":0.59075713,"about_ca_system_score_codex":0.000005351538,"about_ca_system_score_gemma":0.0000146921575,"threshold_uncertainty_score":0.31858763},"labels":[],"label_agreement":null},{"id":"W2153371932","doi":"10.1128/iai.01698-07","title":"Epidermal Growth Factor Inhibits <i>Campylobacter jejuni</i> -Induced Claudin-4 Disruption, Loss of Epithelial Barrier Function, and <i>Escherichia coli</i> Translocation","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Calgary","funders":"","keywords":"Claudin; Biology; Campylobacter jejuni; Chromosomal translocation; Microbiology; Escherichia coli; Tight junction; Barrier function; Campylobacter; Epidermal growth factor; Function (biology); Cell biology; Bacteria; Genetics; Cell culture; Gene","score_opus":0.027428139659711585,"score_gpt":0.24386792957298328,"score_spread":0.2164397899132717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153371932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99573666,0.00009917282,0.0021157013,0.00019952672,0.00074446865,0.00023726237,0.000047898237,0.000096024836,0.0007233151],"genre_scores_gemma":[0.9975262,0.0012820944,0.000019142628,0.0009143786,0.00011468375,0.000019407695,0.000005951236,0.000017041144,0.0001010957],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985753,0.0002844511,0.00039605878,0.0003253409,0.0002009119,0.00021791483],"domain_scores_gemma":[0.9991431,0.00014911246,0.00018349939,0.00019519591,0.00020566287,0.00012341583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014925054,0.00023344212,0.00029498886,0.00013362763,0.0008684085,0.000033916695,0.00005746451,0.00014762467,0.000085388965],"category_scores_gemma":[0.00027765508,0.000208182,0.00007618576,0.00044333516,0.00040563266,0.00055957027,0.00005300404,0.0003412115,0.0000086969185],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023598426,0.000121948695,0.084252924,0.000052063875,0.000033431344,0.0000013542067,0.0016129685,0.0000018567965,0.9100459,0.0007876283,0.00015752703,0.0026963966],"study_design_scores_gemma":[0.0011933742,0.0003153132,0.63243496,0.00001744748,0.000035272882,0.000099761906,0.00007299312,0.000018779603,0.36155894,0.00061506213,0.0033904857,0.000247633],"about_ca_topic_score_codex":0.00030989404,"about_ca_topic_score_gemma":0.000044515768,"teacher_disagreement_score":0.548487,"about_ca_system_score_codex":0.000023496657,"about_ca_system_score_gemma":0.000047119513,"threshold_uncertainty_score":0.84894156},"labels":[],"label_agreement":null},{"id":"W2153531943","doi":"10.1128/iai.73.4.2135-2146.2005","title":"Regulation of Type III Secretion Hierarchy of Translocators and Effectors in Attaching and Effacing Bacterial Pathogens","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":190,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Secretion; Effector; Biology; Type three secretion system; Microbiology; Enteropathogenic Escherichia coli; Cell biology; Pathogenicity island; Citrobacter rodentium; Mutant; Pathogen; Virulence; Genetics; Biochemistry; Gene","score_opus":0.009518963146745971,"score_gpt":0.26964217629611176,"score_spread":0.26012321314936576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153531943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999206,0.00038553806,0.00016366801,0.000015640619,0.000031748274,0.000108186774,0.000002420579,0.0000030907552,0.00008371385],"genre_scores_gemma":[0.9989259,0.0009291221,0.00008576049,0.0000041739686,0.000025793068,0.0000029719174,0.000015587459,0.000003988456,0.000006690348],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99953806,0.00014325068,0.00012441998,0.000086546796,0.000041852603,0.00006588646],"domain_scores_gemma":[0.9998051,0.000024532172,0.000043323154,0.000064799555,0.00004085518,0.000021402824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030739984,0.000057970326,0.00010077955,0.000060233484,0.000056041536,0.0000058283676,0.000013626983,0.00006200268,0.0000032138769],"category_scores_gemma":[0.00009499002,0.000055915585,0.000014116465,0.000077414705,0.00008960915,0.000009464087,0.000039616592,0.000073057265,4.3588717e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012494894,0.00002120242,0.1086737,0.000059912116,0.000014688221,3.2779273e-8,0.00033828642,0.000022808415,0.8808388,0.000013123947,0.0000014170281,0.009891091],"study_design_scores_gemma":[0.0006925128,0.00030729262,0.8438192,0.00003335506,0.000008334176,0.0000030163092,0.000044681346,0.00045106854,0.154197,0.000014568565,0.00036813255,0.00006081452],"about_ca_topic_score_codex":0.00036818298,"about_ca_topic_score_gemma":0.000294837,"teacher_disagreement_score":0.7351455,"about_ca_system_score_codex":0.000008323455,"about_ca_system_score_gemma":0.000013782167,"threshold_uncertainty_score":0.22801714},"labels":[],"label_agreement":null},{"id":"W2153690977","doi":"10.1128/iai.71.3.1396-1404.2003","title":"Enterohemorrhagic<i>Escherichia coli</i>O157:H7 Disrupts Stat1-Mediated Gamma Interferon Signal Transduction in Epithelial Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Biology; Escherichia coli; Signal transduction; Interferon gamma; Microbiology; Interferon; Escherichia coli Proteins; Transduction (biophysics); Enterobacteriaceae; Cell biology; Cytokine; Virology; Immunology; Gene; Genetics; Biochemistry","score_opus":0.011603887964116669,"score_gpt":0.2564311103738132,"score_spread":0.24482722240969657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153690977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99635595,0.00027774554,0.0014807078,0.000047427755,0.0002861859,0.00027047412,0.000018961478,0.000023493849,0.0012390751],"genre_scores_gemma":[0.99808556,0.0012429488,0.00009245337,0.00011698223,0.00006295172,0.000049649072,0.00004750444,0.000018462562,0.00028351432],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859345,0.00048493515,0.0002363511,0.00026719653,0.00011827094,0.00029979428],"domain_scores_gemma":[0.9995423,0.00003434864,0.00006023982,0.00018655695,0.00008744641,0.00008913351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004190618,0.00018951327,0.00017796694,0.00008507859,0.00015827476,0.000040413266,0.000070713184,0.00013903191,0.00011812882],"category_scores_gemma":[0.00013351941,0.00018516411,0.00006443722,0.00021131222,0.00014235971,0.000017098399,0.000057698293,0.00034649452,0.0000112843545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024438507,0.00023121087,0.009519501,0.000035040237,0.000041836935,0.0000022525587,0.0003098514,0.000024610841,0.9882624,0.000013878374,0.00010322624,0.0012117642],"study_design_scores_gemma":[0.0020074786,0.0012704671,0.054623753,0.00002534224,0.000018384864,0.000015637572,0.00032015625,0.00018007554,0.90490466,0.000059275866,0.036231592,0.00034314208],"about_ca_topic_score_codex":0.00047713274,"about_ca_topic_score_gemma":0.00064218056,"teacher_disagreement_score":0.08335775,"about_ca_system_score_codex":0.000054999204,"about_ca_system_score_gemma":0.00008288135,"threshold_uncertainty_score":0.7550773},"labels":[],"label_agreement":null},{"id":"W2153724714","doi":"10.1128/iai.03056-14","title":"The Cpx System Regulates Virulence Gene Expression in Vibrio cholerae","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Vibrio cholerae; Response regulator; Cholera toxin; Signal transduction; Pilus; Microbiology; Mutant; Histidine kinase; Regulation of gene expression; Cell biology; Virulence factor; Regulator; Gene; Genetics; Bacteria","score_opus":0.019752124056065242,"score_gpt":0.2732433100959893,"score_spread":0.25349118603992404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153724714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976566,0.0011333801,0.00010433455,0.00006703691,0.0001544489,0.00011173252,0.00000226844,0.000013974603,0.0007562134],"genre_scores_gemma":[0.9986493,0.0010145012,0.000040244897,0.000017559314,0.000066425535,0.00002433379,0.000011132504,0.000005773877,0.00017072193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993534,0.00019417859,0.000113369584,0.0001213396,0.000077633,0.00014009648],"domain_scores_gemma":[0.99958736,0.000015628504,0.0000374166,0.00022813662,0.00008019362,0.000051237894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044208407,0.000075519834,0.00007293905,0.000025687563,0.00021831018,0.000052152634,0.00007255268,0.00006183544,0.0000011025508],"category_scores_gemma":[0.00018475657,0.00005291857,0.000020652165,0.000067123234,0.00009533673,0.000008290663,0.00020383553,0.000101741076,0.0000052296787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086164306,0.00002047413,0.014846169,0.00001280782,0.00001105063,6.239742e-7,0.000101539285,0.000014468409,0.9827242,0.000010199822,0.00038177668,0.0017905518],"study_design_scores_gemma":[0.0005901728,0.00017532142,0.2339576,0.00004167728,0.0000025787128,0.000020230842,0.00028182418,0.000073160845,0.7444954,0.000024730516,0.020234585,0.00010270087],"about_ca_topic_score_codex":0.0003751058,"about_ca_topic_score_gemma":0.00015681166,"teacher_disagreement_score":0.23822877,"about_ca_system_score_codex":0.00003142972,"about_ca_system_score_gemma":0.00003171827,"threshold_uncertainty_score":0.21579567},"labels":[],"label_agreement":null},{"id":"W2153785479","doi":"10.1128/iai.02510-14","title":"Monitoring F165 <sub>1</sub> P-Like Fimbria Expression at the Single-Cell Level Reveals a Highly Heterogeneous Phenotype","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Escherichia coli; Flow cytometry; Fimbria; Population; Phenotype; Fluorescence microscope; Pilus; Microbiology; Green fluorescent protein; Bacteria; Fluorescence; Epigenetics; Enterobacteriaceae; Molecular biology; Genetics; Gene","score_opus":0.05427785028278156,"score_gpt":0.28069405897303046,"score_spread":0.2264162086902489,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153785479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958776,0.0023960357,0.00014778966,0.000057387006,0.00036854387,0.00017295683,0.000006953516,0.000024055551,0.0009486412],"genre_scores_gemma":[0.99791175,0.00103962,0.00006064547,0.00007442467,0.00019628303,0.00003448579,0.00001504129,0.000017465023,0.00065028603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899954,0.00027597393,0.00014602178,0.00020317385,0.00015235778,0.00022294406],"domain_scores_gemma":[0.9992746,0.000037298756,0.00007488054,0.00034210779,0.00017027564,0.0001008178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036323577,0.00014568518,0.000116816496,0.000027184438,0.0004021905,0.000047914637,0.00009879938,0.00011027689,0.0000029645994],"category_scores_gemma":[0.00023381872,0.000110430476,0.000054334192,0.00008908055,0.000113878035,0.000008926293,0.00048243962,0.00017731154,0.000015551144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010082826,0.000082438346,0.009709335,0.00001644749,0.00002594785,0.0000010974333,0.00013225253,0.000031141222,0.9849894,5.4575077e-7,0.0014341435,0.0034763922],"study_design_scores_gemma":[0.00049591664,0.00034968107,0.021989036,0.000022651093,0.000011466289,0.000014356724,0.00006084635,0.000012680543,0.9638206,0.000025424863,0.013057889,0.00013945243],"about_ca_topic_score_codex":0.00015214474,"about_ca_topic_score_gemma":0.00009367856,"teacher_disagreement_score":0.021168834,"about_ca_system_score_codex":0.000056146982,"about_ca_system_score_gemma":0.000037811133,"threshold_uncertainty_score":0.45032242},"labels":[],"label_agreement":null},{"id":"W2153789651","doi":"10.1128/iai.00199-07","title":"Purine Salvage Pathways among <i>Borrelia</i> Species","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Borrelia burgdorferi; Ribonucleotide reductase; Spirochaetaceae; Molecular biology; relapsing fever; Virology; Microbiology; Gene; Biochemistry; Genetics; Protein subunit","score_opus":0.013370249022333825,"score_gpt":0.22535400057647925,"score_spread":0.21198375155414542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153789651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97643024,0.00115062,0.00056130975,0.000031973013,0.0012594559,0.00017754364,0.000020859032,0.00035092558,0.020017058],"genre_scores_gemma":[0.9976329,0.00035613985,0.0000070428964,0.00019723912,0.00007471665,0.000009707336,0.000069153044,0.000018025463,0.0016350632],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99898,0.00015821194,0.00027210865,0.00020864415,0.000034844736,0.0003461915],"domain_scores_gemma":[0.999302,0.0001473124,0.00011236787,0.00029573712,0.00009287982,0.00004968382],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044553066,0.00019496359,0.00020984595,0.00017628643,0.0004901059,0.00003731348,0.00008296569,0.00021040304,0.00094106665],"category_scores_gemma":[0.00019783621,0.00018497366,0.00009729784,0.00020652301,0.00046838965,0.00020938712,0.00010962243,0.00045267746,0.00034460265],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011780972,0.00046265146,0.69786173,0.00002891961,0.00017954351,0.000010783078,0.0003629337,0.00000321929,0.28651515,0.0020067145,0.0029825196,0.009468047],"study_design_scores_gemma":[0.0007237204,0.00018749296,0.87595576,0.000015437612,0.000039164024,0.00009157443,0.00011121836,8.215674e-7,0.069793805,0.00017580295,0.052708957,0.00019624122],"about_ca_topic_score_codex":0.0023016902,"about_ca_topic_score_gemma":0.0009872783,"teacher_disagreement_score":0.21672136,"about_ca_system_score_codex":0.00006027197,"about_ca_system_score_gemma":0.000027604405,"threshold_uncertainty_score":0.9999722},"labels":[],"label_agreement":null},{"id":"W2154013592","doi":"10.1128/iai.73.12.8393-8396.2005","title":"Impaired Kupffer Cells in Highly Susceptible Mice Infected with<i>Trypanosoma congolense</i>","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Trypanosoma; Macrophage; Apoptosis; Kupffer cell; Immunology; Virology; In vitro; Genetics","score_opus":0.015240777963673569,"score_gpt":0.2714778162282161,"score_spread":0.2562370382645425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154013592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899541,0.00010832957,0.00008629378,0.0012706185,0.000052259642,0.00046440694,0.000012858362,0.00014021312,0.007910881],"genre_scores_gemma":[0.9973664,0.00042737837,0.00021772031,0.00049730553,0.000090474765,0.00004608301,0.00004029322,0.000019796058,0.0012945059],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99893844,0.00010959485,0.0002452404,0.00020618261,0.00017249386,0.00032805323],"domain_scores_gemma":[0.99913037,0.00009159413,0.0000558391,0.00033912886,0.00018218612,0.00020090684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003414967,0.00016209725,0.00023582227,0.0002673644,0.00017991713,0.000052706477,0.000054005814,0.00011508606,0.00029861694],"category_scores_gemma":[0.00008486578,0.00013603391,0.000049383227,0.00057958,0.00016893816,0.00026291516,0.000052419797,0.00047331344,0.0001285019],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000267473,0.0005682109,0.07972543,0.00004846593,0.00004146305,0.0000059989816,0.00022759667,0.000008018671,0.9106843,0.0001330293,0.002199872,0.0060901507],"study_design_scores_gemma":[0.0024279782,0.0007482361,0.8677672,0.000054898785,0.0000197564,0.00015072816,0.000060010138,0.00012271681,0.07512849,0.000015736821,0.053360697,0.00014355016],"about_ca_topic_score_codex":0.0021237717,"about_ca_topic_score_gemma":0.001509785,"teacher_disagreement_score":0.8355558,"about_ca_system_score_codex":0.00013558792,"about_ca_system_score_gemma":0.00012130671,"threshold_uncertainty_score":0.5547302},"labels":[],"label_agreement":null},{"id":"W2154032532","doi":"10.1128/iai.71.1.126-131.2003","title":"Multigenic Control of Disease Severity after Virulent<i>Mycobacterium tuberculosis</i>Infection in Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital","funders":"Vetenskapsrådet; Karolinska Institutet; Svenska Sällskapet för Medicinsk Forskning; Howard Hughes Medical Institute","keywords":"Biology; Quantitative trait locus; Locus (genetics); Backcrossing; Genetics; Allele; Virulence; Genotyping; Chromosome 17 (human); Inbred strain; Mycobacterium tuberculosis; Chromosome; Tuberculosis; Genotype; Gene; Pathology","score_opus":0.013666672849799463,"score_gpt":0.2603075629687519,"score_spread":0.24664089011895243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154032532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784595,0.00067127694,0.000078477016,0.0002704499,0.00016903134,0.00042480286,0.000031827538,0.00004522559,0.00046293365],"genre_scores_gemma":[0.99317586,0.0062382906,0.000011610487,0.00030418523,0.00006279664,0.00009678403,0.000018961622,0.000012461074,0.000079029895],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988738,0.00024172502,0.00028747905,0.00018752707,0.00016889053,0.00024063764],"domain_scores_gemma":[0.9992123,0.00010429526,0.000065092136,0.00023915395,0.00012686475,0.00025226915],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002591396,0.00014787885,0.0002724421,0.00022496463,0.00007267452,0.000023723504,0.000026503827,0.000096705415,0.0011001823],"category_scores_gemma":[0.0003228778,0.00013821555,0.00012276108,0.00026404875,0.00009554271,0.00025178798,0.00004053831,0.00032730406,0.00005075301],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008372214,0.0008550754,0.97710407,0.00030602925,0.000047996793,0.000008963549,0.00013673208,0.0000019011811,0.017203966,0.0000032807566,0.00012597023,0.003368814],"study_design_scores_gemma":[0.0023544822,0.00025666022,0.9915323,0.00012413695,0.00007760772,0.000013805271,0.000006205305,0.00086939055,0.002800961,0.000014584628,0.00182947,0.00012037981],"about_ca_topic_score_codex":0.0051817815,"about_ca_topic_score_gemma":0.00050667033,"teacher_disagreement_score":0.014428266,"about_ca_system_score_codex":0.00008740282,"about_ca_system_score_gemma":0.000024774656,"threshold_uncertainty_score":0.99981296},"labels":[],"label_agreement":null},{"id":"W2154078738","doi":"10.1128/iai.74.1.528-536.2006","title":"CpG-Oligodeoxynucleotide Is a Potent Adjuvant with an<i>Entamoeba histolytica</i>Gal-Inhibitable Lectin Vaccine against Amoebic Liver Abscess in Gerbils","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; McGill University; University of Virginia","keywords":"Entamoeba histolytica; CpG Oligodeoxynucleotide; Lectin; Biology; Adjuvant; Microbiology; Immunology; Immunoadjuvant; Virology; Molecular biology; Biochemistry; DNA methylation","score_opus":0.01231824442178423,"score_gpt":0.25531160078955456,"score_spread":0.24299335636777034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154078738","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98961455,0.00037918863,0.00036184143,0.0003938969,0.0001380878,0.0005681225,0.0000067442015,0.0001437786,0.008393821],"genre_scores_gemma":[0.99582255,0.0006336589,0.0003711804,0.0012401952,0.000105927924,0.00007320259,0.00004063604,0.000039817594,0.0016728387],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984984,0.00011473826,0.00039058574,0.00037861857,0.00020757239,0.0004101056],"domain_scores_gemma":[0.99897814,0.000045212328,0.00013276692,0.00045745092,0.00016071608,0.00022569147],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027747484,0.0003087602,0.0004448007,0.0003558864,0.0003713062,0.000055299184,0.000051910305,0.00014114044,0.0004530941],"category_scores_gemma":[0.000039656898,0.00024813242,0.00009028979,0.00047153435,0.0000811046,0.00051269546,0.0000568221,0.000470485,0.000091856906],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016671857,0.00672596,0.8882675,0.0002133753,0.00042722642,0.00021582922,0.0020174244,0.00031893392,0.0043722284,0.00018504892,0.0024956497,0.093093604],"study_design_scores_gemma":[0.008616766,0.0017792524,0.96034974,0.0003184413,0.00027302795,0.000758602,0.00021595665,0.0032563822,0.0070214123,0.000048768583,0.016889082,0.00047257333],"about_ca_topic_score_codex":0.008573193,"about_ca_topic_score_gemma":0.0045637493,"teacher_disagreement_score":0.09262103,"about_ca_system_score_codex":0.0004930808,"about_ca_system_score_gemma":0.00010931964,"threshold_uncertainty_score":0.9999971},"labels":[],"label_agreement":null},{"id":"W2154096824","doi":"10.1128/iai.71.5.2430-2438.2003","title":"Modulation of Intestinal Muscle Contraction by Interleukin-9 (IL-9) or IL-9 Neutralization: Correlation with Worm Expulsion in Murine Nematode Infections","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasitic Diseases Research and Treatment","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Multidisciplinary University Research Initiative","keywords":"Biology; Trichinella spiralis; Immune system; Immunology; Cytokine; Nematode infection; Microbiology; Antigen; Nematode","score_opus":0.02023374104958211,"score_gpt":0.3149439339363809,"score_spread":0.29471019288679884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154096824","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872144,0.000049500435,0.010357138,0.000054247746,0.00007380105,0.0004688371,0.0000076198694,0.000042363336,0.0017320837],"genre_scores_gemma":[0.9992746,0.0001909049,0.00009883515,0.000023854545,0.000011675743,0.000052752544,0.00014895412,0.00001068328,0.00018772969],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991088,0.00015227341,0.00028962916,0.00014883677,0.00015795497,0.00014249461],"domain_scores_gemma":[0.9993469,0.000101436315,0.00012011809,0.0001542051,0.00016885459,0.00010850141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001772116,0.00012269052,0.0001881309,0.00022721259,0.0001150662,0.00002111368,0.000015258516,0.00006329784,0.0001884269],"category_scores_gemma":[0.0002922335,0.000095608215,0.000035320903,0.0004243242,0.000074766416,0.00030580655,0.000009554939,0.0001949972,0.0000055701835],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010004238,0.0026123303,0.97021186,0.00015098798,0.000076903205,0.000014776337,0.00027048687,0.0007886104,0.011613041,0.00053674245,0.00010570875,0.012618133],"study_design_scores_gemma":[0.0035570571,0.0013837283,0.98522836,0.00027759263,0.00006520797,0.00026695916,0.00015048441,0.0042109285,0.0038326737,0.00012157626,0.00079842506,0.000107029286],"about_ca_topic_score_codex":0.0014790638,"about_ca_topic_score_gemma":0.0005650324,"teacher_disagreement_score":0.015016481,"about_ca_system_score_codex":0.00014668344,"about_ca_system_score_gemma":0.00008415221,"threshold_uncertainty_score":0.389879},"labels":[],"label_agreement":null},{"id":"W2154098873","doi":"10.1128/iai.00533-13","title":"Requirement and Redundancy of the Src Family Kinases Fyn and Lyn in Perforin-Dependent Killing of Cryptococcus neoformans by NK Cells","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; University of Calgary","keywords":"LYN; Biology; Src family kinase; Perforin; FYN; Cryptococcus neoformans; Cell biology; Kinase; Proto-oncogene tyrosine-protein kinase Src; Tyrosine-protein kinase CSK; Immunology; SH3 domain; Microbiology; CD8; Immune system","score_opus":0.015871107555723744,"score_gpt":0.24755540022120595,"score_spread":0.2316842926654822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154098873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962051,0.001106622,0.000026156242,0.000081680315,0.00014548512,0.00036265358,0.000004355578,0.000008752051,0.002059193],"genre_scores_gemma":[0.9949513,0.0047971695,0.000020811345,0.000043199805,0.000012142009,0.000021645546,0.000001384655,0.0000047044473,0.00014762818],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994444,0.000050068244,0.00023430269,0.000087283974,0.000082722916,0.000101184894],"domain_scores_gemma":[0.9996201,0.00004783214,0.000082722756,0.00013025031,0.00008642562,0.0000327092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001863928,0.00008775559,0.00018814811,0.00007024555,0.00016558311,0.00001249909,0.000018288467,0.000045639532,0.000027401065],"category_scores_gemma":[0.00003481223,0.00006043512,0.000029286715,0.00010721784,0.00015097811,0.00010833967,0.00007658049,0.00016122112,7.057548e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004085276,0.0002841485,0.61510444,0.0003529541,0.000057170622,2.7971544e-7,0.0012698473,0.000008626352,0.3723552,0.0000984413,0.00037213767,0.010055927],"study_design_scores_gemma":[0.00094300107,0.0005117045,0.9359496,0.00023281721,0.000040474548,0.000010895998,0.0010967618,0.00018660679,0.05964754,0.00009674991,0.0012051566,0.000078691235],"about_ca_topic_score_codex":0.0075067542,"about_ca_topic_score_gemma":0.00013453866,"teacher_disagreement_score":0.3208452,"about_ca_system_score_codex":0.000026493235,"about_ca_system_score_gemma":0.000014665199,"threshold_uncertainty_score":0.99910235},"labels":[],"label_agreement":null},{"id":"W2154142324","doi":"10.1128/iai.03018-14","title":"Air Pollution Particulate Matter Alters Antimycobacterial Respiratory Epithelium Innate Immunity","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Environmental Health Sciences","keywords":"Mycobacterium tuberculosis; Biology; Immunology; Innate immune system; A549 cell; Antimycobacterial; Immune system; Microbiology; Immunity; Respiratory epithelium; Tuberculosis; Respiratory system; Cell culture; Medicine; Pathology","score_opus":0.021330495134384155,"score_gpt":0.24571231740332033,"score_spread":0.2243818222689362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154142324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956594,0.00022284938,0.00013012225,0.0003574077,0.0017010272,0.00014912708,0.000028434906,0.00011389154,0.0016377103],"genre_scores_gemma":[0.99769104,0.0000671161,0.000014155193,0.0014203388,0.000074374235,0.000007784085,0.00006133351,0.000016121938,0.0006477152],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986744,0.00054736994,0.00026858208,0.00017947562,0.000030448397,0.0002997389],"domain_scores_gemma":[0.9994301,0.00003163549,0.0001354544,0.00026679598,0.00008965,0.000046365232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004829988,0.00019415357,0.00024091196,0.00012065953,0.00043574712,0.00004435966,0.00008136245,0.00021482723,0.00030857505],"category_scores_gemma":[0.000057289668,0.00017632803,0.000078137215,0.00011964891,0.0003627508,0.0003998698,0.00014581232,0.0004195769,0.0006371497],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006300431,0.00030352327,0.06455649,0.000038279617,0.00020918706,0.0000030430926,0.0013526955,0.00006713705,0.9108367,0.00026185458,0.018698081,0.0030429903],"study_design_scores_gemma":[0.002579046,0.00042594504,0.6087898,0.000060528506,0.000068818525,0.00013645207,0.00042627007,0.0000053158524,0.26284954,0.00030676587,0.12388522,0.00046627782],"about_ca_topic_score_codex":0.0032145686,"about_ca_topic_score_gemma":0.000066870205,"teacher_disagreement_score":0.6479871,"about_ca_system_score_codex":0.000058955833,"about_ca_system_score_gemma":0.000052454427,"threshold_uncertainty_score":0.81894827},"labels":[],"label_agreement":null},{"id":"W2154163946","doi":"10.1128/iai.01165-07","title":"<i>Pseudomonas aeruginosa</i> Cystic Fibrosis Isolates from Individual Patients Demonstrate a Range of Levels of Lethality in Two <i>Drosophila melanogaster</i> Infection Models","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Foothills Medical Centre; University of Calgary","funders":"","keywords":"Biology; Pseudomonas aeruginosa; Lethality; Microbiology; Cystic fibrosis; Drosophila melanogaster; Sputum; Genetics; Bacteria; Gene; Pathology; Medicine","score_opus":0.03897780691817125,"score_gpt":0.23821629950819656,"score_spread":0.1992384925900253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154163946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990036,0.00006371008,0.000005293228,0.000023336393,0.00014952273,0.0001832817,0.00035684678,0.000022908067,0.00019149299],"genre_scores_gemma":[0.9996155,0.00018406901,0.0000318355,0.000049358827,0.000042414064,0.000008692975,0.00006464261,0.0000011832102,0.0000022916229],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987377,0.0003130893,0.00045342857,0.0001850809,0.00014518443,0.00016551024],"domain_scores_gemma":[0.99930376,0.00019775977,0.0002623013,0.00006577991,0.00012365534,0.000046733476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028062012,0.00015680179,0.00031152894,0.000036857436,0.00019323967,0.000025003348,0.00008715994,0.00010638128,0.00007243249],"category_scores_gemma":[0.000044177887,0.00008052374,0.000090004214,0.00030670507,0.00018816117,0.00042275444,0.00007563292,0.00016097681,0.0000017511303],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007033824,0.00025647724,0.68970376,0.000011844245,0.000016095626,2.535043e-7,0.00035108122,0.000017587905,0.30613703,0.000016471282,0.000003416427,0.00341564],"study_design_scores_gemma":[0.00056017836,0.00033633452,0.94765514,0.00006276757,0.00001782563,0.0000038248163,0.000023136514,0.000047043224,0.050283592,0.0008618586,0.00001739802,0.00013089867],"about_ca_topic_score_codex":0.049923435,"about_ca_topic_score_gemma":0.003078864,"teacher_disagreement_score":0.25795138,"about_ca_system_score_codex":0.000016586828,"about_ca_system_score_gemma":0.000011012257,"threshold_uncertainty_score":0.9564032},"labels":[],"label_agreement":null},{"id":"W2154203929","doi":"10.1128/iai.73.7.4138-4145.2005","title":"Inactivation of the Pst System Reduces the Virulence of an Avian Pathogenic <i>Escherichia coli</i> O78 Strain","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal","funders":"Université de Montréal; Université du Québec à Montréal","keywords":"Virulence; Biology; Microbiology; Escherichia coli; Mutant; Pathogenic Escherichia coli; Regulon; Enterobacteriaceae; Plasmid; Polymyxin; Strain (injury); Operon; Mutation; Gene; Genetics; Antibiotics","score_opus":0.011503564115890581,"score_gpt":0.2610888729046516,"score_spread":0.24958530878876103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154203929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847436,0.0002477097,0.000062589985,0.00010781234,0.000056229437,0.00018585153,0.0000171722,0.000006619205,0.0008416659],"genre_scores_gemma":[0.9994989,0.00026182496,0.000057328783,0.00004987837,0.000055110453,0.000018160254,0.0000064748033,0.0000054044194,0.000046901478],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992104,0.00034222205,0.00015533222,0.000097062344,0.00010315676,0.00009183025],"domain_scores_gemma":[0.9994347,0.000021559796,0.0001261284,0.0002707641,0.0001249777,0.00002187298],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004228575,0.00007422351,0.000088323744,0.00001600887,0.00021810763,0.000011428576,0.00012830563,0.000059602553,0.0000023060418],"category_scores_gemma":[0.00013163494,0.0000468154,0.00004549668,0.0001467765,0.00020993318,0.000011596877,0.000107165484,0.00013191972,3.5619547e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031711566,0.00006698462,0.002525316,0.000032087686,0.000028973558,2.4633154e-8,0.00018470874,0.0000232756,0.99243504,0.00009632687,0.00001370436,0.0045618485],"study_design_scores_gemma":[0.00019095314,0.00020668573,0.30788735,0.000027315502,0.000012601162,0.0000037413517,0.0005924657,0.0001780291,0.68908805,0.00001093317,0.0017428929,0.000058999696],"about_ca_topic_score_codex":0.00036507638,"about_ca_topic_score_gemma":0.00023473799,"teacher_disagreement_score":0.30536205,"about_ca_system_score_codex":0.000017436645,"about_ca_system_score_gemma":0.000053952837,"threshold_uncertainty_score":0.19090766},"labels":[],"label_agreement":null},{"id":"W2154392123","doi":"10.1128/iai.74.3.1555-1564.2006","title":"The Outer Core Lipopolysaccharide of <i>Salmonella enterica</i> Serovar Typhi Is Required for Bacterial Entry into Epithelial Cells","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Lipopolysaccharide; Internalization; Biology; Salmonella typhi; Microbiology; Serotype; Mutant; Bacterial outer membrane; Salmonella enterica; Antigen; Enterobacteriaceae; Salmonella; Typhoid fever; Bacteria; Escherichia coli; Gene; Cell; Biochemistry; Immunology; Genetics","score_opus":0.022267541554965877,"score_gpt":0.24489756632091786,"score_spread":0.22263002476595198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154392123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981024,0.000083827515,0.000038098457,0.00045098262,0.0007646082,0.00020003192,0.00005991957,0.00003265339,0.00026745457],"genre_scores_gemma":[0.998515,0.00034892166,0.00003655018,0.0002631341,0.00045435093,0.00001907315,0.000052477895,0.000001487813,0.00030896603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990982,0.00013556467,0.000322765,0.00017154725,0.00006508486,0.00020688152],"domain_scores_gemma":[0.99920464,0.00040551598,0.00017977985,0.00008863684,0.000080199425,0.00004123933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000357807,0.0001293007,0.00020269351,0.000009308805,0.00038060598,0.000040714287,0.00012615861,0.00012417353,0.000087864006],"category_scores_gemma":[0.00004505263,0.000050180206,0.00012408548,0.00008221262,0.00015268568,0.00007566407,0.00007410032,0.00009942375,0.000009795423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020423555,0.00006886911,0.013880183,0.000008094038,0.000016591024,1.9860576e-7,0.00006504709,4.2921152e-7,0.96678835,0.00018279564,0.0019721028,0.016813094],"study_design_scores_gemma":[0.00074950454,0.0008615823,0.25193435,0.000021230522,0.00005065657,0.000019842922,0.00016668923,0.0000854538,0.5093142,0.0070036612,0.22947577,0.00031705972],"about_ca_topic_score_codex":0.0058484892,"about_ca_topic_score_gemma":0.00059620984,"teacher_disagreement_score":0.45747417,"about_ca_system_score_codex":0.000015115997,"about_ca_system_score_gemma":0.000005871128,"threshold_uncertainty_score":0.8841205},"labels":[],"label_agreement":null},{"id":"W2154435279","doi":"10.1128/iai.73.3.1625-1634.2005","title":"Monocytes Are Highly Sensitive to<i>Clostridium difficile</i>Toxin A-Induced Apoptotic and Nonapoptotic Cell Death","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Guts UK; Fondation pour la Recherche Médicale","keywords":"Propidium iodide; Toxin; Biology; Apoptosis; Programmed cell death; Clostridium difficile toxin A; Microbiology; Flow cytometry; Extracellular; Monocyte; Molecular biology; Cytochrome c; Lactate dehydrogenase; Mitochondrial permeability transition pore; Biochemistry; Clostridium difficile; Immunology; Enzyme","score_opus":0.02965309380388416,"score_gpt":0.2888990405503855,"score_spread":0.25924594674650137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154435279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993414,0.00020674217,0.00008812872,0.0020952113,0.00014915474,0.00067686965,0.00002217276,0.00015537461,0.0031923393],"genre_scores_gemma":[0.9972992,0.00072658545,0.00018811152,0.00059564004,0.00032238913,0.000027349513,0.000027198223,0.00004207297,0.00077146717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981311,0.00016123102,0.00037653223,0.00046371602,0.00034327924,0.00052416266],"domain_scores_gemma":[0.9984775,0.00021354256,0.00010396114,0.0004232855,0.00026828225,0.00051341596],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00031812376,0.00035229002,0.0004917755,0.00035290388,0.00041682465,0.000108631495,0.000068484835,0.00021080667,0.00007095755],"category_scores_gemma":[0.0002732003,0.00032857762,0.00010997032,0.0004439937,0.000095222604,0.00015693493,0.00020154282,0.0007372308,0.0001588239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063032826,0.0011061891,0.014696517,0.00025480712,0.00010106839,0.00003934367,0.00072612026,0.00004535265,0.9625533,0.00009580988,0.0007598425,0.018991271],"study_design_scores_gemma":[0.002142942,0.0010162494,0.15489417,0.00014666091,0.00012948916,0.00019542668,0.00040790188,0.0010708045,0.83651006,0.0000074689415,0.0031066227,0.000372218],"about_ca_topic_score_codex":0.0011054332,"about_ca_topic_score_gemma":0.0000958627,"teacher_disagreement_score":0.14019765,"about_ca_system_score_codex":0.0002658103,"about_ca_system_score_gemma":0.0001108969,"threshold_uncertainty_score":0.9999166},"labels":[],"label_agreement":null},{"id":"W2154824060","doi":"10.1128/iai.00753-06","title":"Amino Acid Residues within Enterohemorrhagic<i>Escherichia coli</i>O157:H7 Tir Involved in Phosphorylation, α-Actinin Recruitment, and Nck-Independent Pedestal Formation","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Escherichia coli; Phosphorylation; Microbiology; Amino acid; Pedestal; Biochemistry; Cell biology; Gene","score_opus":0.0286785555150116,"score_gpt":0.28280219054639005,"score_spread":0.25412363503137847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154824060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968582,0.0007869453,0.00030408776,0.00008460359,0.00010062477,0.0004561406,0.000007820425,0.000026947906,0.0013746462],"genre_scores_gemma":[0.9979863,0.0010924205,0.00026686894,0.000096830896,0.00006417049,0.000114502385,0.00012542997,0.000013695402,0.00023976846],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99889576,0.00023433627,0.00028970948,0.00023131314,0.0001367325,0.00021215952],"domain_scores_gemma":[0.9995005,0.000022315646,0.00013097058,0.00018335634,0.000107972926,0.000054893706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046365324,0.000172456,0.00015671542,0.00008217858,0.00024942704,0.00007858106,0.000058427628,0.00013294932,0.000008602441],"category_scores_gemma":[0.00013286714,0.00017030312,0.00003316924,0.0001560824,0.000113558744,0.00004393231,0.00016190163,0.00024549768,0.000002580651],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020131258,0.00016223545,0.30367658,0.000056570785,0.000027659245,0.0000018935905,0.0003689585,0.000016253853,0.6936316,0.000044047123,0.00034872838,0.0014641635],"study_design_scores_gemma":[0.001120803,0.00035319495,0.6960534,0.000026982561,0.000011357352,0.0000105994395,0.00054088386,0.00026954003,0.29738995,0.0001284577,0.0038956,0.00019925216],"about_ca_topic_score_codex":0.0026427547,"about_ca_topic_score_gemma":0.014085613,"teacher_disagreement_score":0.39624166,"about_ca_system_score_codex":0.00005807238,"about_ca_system_score_gemma":0.000043076165,"threshold_uncertainty_score":0.7860103},"labels":[],"label_agreement":null},{"id":"W2154891001","doi":"10.1128/iai.73.6.3598-3608.2005","title":"Human Immune Response to a Plague Vaccine Comprising Recombinant F1 and V Antigens","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Immunogenicity; Biology; Antigen; Immune system; Immunity; Antibody; Immunoglobulin G; Immunology; Virology; Epitope; Titer; Antibody titer; Recombinant DNA; Vaccination","score_opus":0.014415292242023679,"score_gpt":0.30909502075353656,"score_spread":0.29467972851151286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154891001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854875,0.00027432296,0.00011574605,0.0004730263,0.000085180785,0.0001924265,0.000005452848,0.000021107344,0.00028400254],"genre_scores_gemma":[0.9987728,0.00022517673,0.00015793096,0.00014240378,0.00006459573,0.000007480624,0.00003710391,0.000015059234,0.0005774617],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990347,0.00026028018,0.00018991891,0.00022268211,0.00007015343,0.00022227515],"domain_scores_gemma":[0.9994383,0.000026715948,0.0000466753,0.00029205182,0.000080754944,0.00011549507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005715332,0.00013130975,0.00015032549,0.00012477636,0.00037020116,0.00006836255,0.00006828596,0.00011400819,0.00003463868],"category_scores_gemma":[0.00014786504,0.00013312278,0.00003584929,0.00012050685,0.00004625514,0.000012184598,0.00019847082,0.0001947582,0.000017033111],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004516934,0.00008596106,0.03278235,0.000010335796,0.000023262355,0.0000013132325,0.00013568348,0.000007406618,0.9624275,0.000004287997,0.0003190297,0.003751202],"study_design_scores_gemma":[0.0007815608,0.0006293641,0.77814317,0.000019928415,0.0000063669395,0.000082920196,0.000033124295,0.000034372904,0.1808977,0.0000051478664,0.0392128,0.00015352247],"about_ca_topic_score_codex":0.0006397407,"about_ca_topic_score_gemma":0.00034207423,"teacher_disagreement_score":0.7815298,"about_ca_system_score_codex":0.000028005075,"about_ca_system_score_gemma":0.000025854712,"threshold_uncertainty_score":0.54285896},"labels":[],"label_agreement":null},{"id":"W2155417514","doi":"10.1128/iai.00150-09","title":"The Purified and Recombinant <i>Legionella pneumophila</i> Chaperonin Alters Mitochondrial Trafficking and Microfilament Organization","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Dalhousie University; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Directorate for Biological Sciences; University of Michigan","keywords":"Chaperonin; Biology; Legionella pneumophila; Recombinant DNA; Microbiology; Legionella; Microfilament; Virology; Cell biology; Cytoskeleton; Bacteria; Protein folding; Genetics; Gene; Cell","score_opus":0.008493769350994784,"score_gpt":0.23810510664277557,"score_spread":0.2296113372917808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155417514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974753,0.0006723688,0.00012180532,0.0011999481,0.0002115828,0.00015725684,8.514348e-7,0.000011901109,0.00014893235],"genre_scores_gemma":[0.9911988,0.008261021,0.000019254854,0.00022396422,0.00009986706,0.0000031850034,0.000022874796,0.0000074877485,0.00016356113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999419,0.00008526641,0.00011490648,0.00017131408,0.00005998162,0.0001495625],"domain_scores_gemma":[0.99969596,0.000016424992,0.00004210721,0.00013158635,0.000055650715,0.0000582966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015412908,0.00009663371,0.000074350035,0.000028175646,0.0005758405,0.00011332559,0.000044643777,0.000082240986,0.0000010183326],"category_scores_gemma":[0.00005178575,0.00007352291,0.000016988186,0.000080358506,0.00011447726,0.000009065304,0.000058275582,0.00012495449,9.4549546e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000646153,0.00004656012,0.0028624083,0.0000072406415,0.00001604683,6.7510365e-7,0.00017762615,0.000002741777,0.9789612,0.00016410358,0.00057116745,0.017125605],"study_design_scores_gemma":[0.0033424613,0.001767738,0.21681865,0.000057333,0.00004368351,0.0003493003,0.00049773447,0.00022824049,0.6838429,0.00042588866,0.092048734,0.00057732774],"about_ca_topic_score_codex":0.00008122802,"about_ca_topic_score_gemma":0.000022662127,"teacher_disagreement_score":0.2951183,"about_ca_system_score_codex":0.000009923455,"about_ca_system_score_gemma":0.000021209096,"threshold_uncertainty_score":0.44289577},"labels":[],"label_agreement":null},{"id":"W2155627064","doi":"10.1128/iai.73.2.1106-1115.2005","title":"The Capsular Polysaccharide of<i>Burkholderia pseudomallei</i>Contributes to Survival in Serum by Reducing Complement Factor C3b Deposition","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Burkholderia pseudomallei; Microbiology; Biology; Polysaccharide; Complement system; Burkholderia; Complement (music); Alternative complement pathway; Bacterial capsule; Complement factor I; Antibody; Immunology; Bacteria; Biochemistry; Virulence","score_opus":0.017688641048842393,"score_gpt":0.2797941683490587,"score_spread":0.2621055273002163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155627064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947578,0.0004398341,0.0014190424,0.002104643,0.00039907615,0.00049935764,0.000026867598,0.00004513897,0.00030824714],"genre_scores_gemma":[0.9988312,0.00056933897,0.00012779569,0.0002357035,0.00007445181,0.000046668098,0.000015461532,0.000013344127,0.000086001055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99891734,0.0001408305,0.0004056051,0.00016511853,0.00013158107,0.00023953644],"domain_scores_gemma":[0.99932104,0.00009402053,0.0000952777,0.00026188974,0.0001330614,0.000094709154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004624427,0.00014404354,0.0002611042,0.00016306774,0.00034925152,0.000053629054,0.0000478485,0.00008283895,0.00007286676],"category_scores_gemma":[0.00012460451,0.00011572201,0.000072097675,0.00035013974,0.000057968,0.0001349848,0.000058770256,0.0002509406,0.0000064925302],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001500384,0.00038266857,0.081101425,0.00004302558,0.000107071595,8.253767e-7,0.00039339784,0.000048265687,0.8889847,0.00028595593,0.00094127544,0.027561398],"study_design_scores_gemma":[0.002070777,0.00037486394,0.6393398,0.00015253868,0.00006368559,0.000033459008,0.00030632457,0.00031235372,0.33468854,0.00002435282,0.022467,0.00016629756],"about_ca_topic_score_codex":0.008771765,"about_ca_topic_score_gemma":0.0012787784,"teacher_disagreement_score":0.5582384,"about_ca_system_score_codex":0.00014468313,"about_ca_system_score_gemma":0.000041247848,"threshold_uncertainty_score":0.9978289},"labels":[],"label_agreement":null},{"id":"W2155671374","doi":"10.1128/iai.02566-14","title":"Identification and Functional Characterization of the Novel Edwardsiella tarda Effector EseJ","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity Western University; Western University","funders":"","keywords":"Edwardsiella tarda; Biology; Effector; Mutant; Microbiology; Virulence; Type three secretion system; Wild type; Secretion; Pathogen; Enterobacteriaceae; Escherichia coli; Bacteria; Gene; Cell biology; Genetics; Biochemistry","score_opus":0.016219228164240415,"score_gpt":0.22082428017063824,"score_spread":0.20460505200639784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155671374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696463,0.00015009062,0.0014092495,0.00013229687,0.0007775299,0.00019231763,0.000028677183,0.0000236947,0.00032151063],"genre_scores_gemma":[0.99765337,0.000043805696,0.0000019312806,0.00007098578,0.000019065692,0.0000076252095,0.0002061122,0.00000412785,0.001992954],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995679,0.00011039881,0.00013152917,0.000098293545,0.00002280555,0.000069030924],"domain_scores_gemma":[0.99964494,0.000016919703,0.000104641374,0.00012863404,0.000091311435,0.000013581709],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021358825,0.000074971205,0.00008584026,0.000043362958,0.0001619983,0.000017567872,0.000036915615,0.00007895512,0.000051522115],"category_scores_gemma":[0.00006491748,0.000054146916,0.00003204804,0.00009814048,0.00013513087,0.000104177176,0.000080100384,0.00010724849,0.000028303502],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048599984,0.00007506215,0.011615332,0.000020157082,0.000051615858,1.939417e-8,0.00021260294,0.0000011010702,0.9854949,0.00036056442,0.0008251387,0.0012949207],"study_design_scores_gemma":[0.00096627284,0.000043661392,0.8351085,0.000017119486,0.000066224195,0.000014202381,0.00008102561,0.000011629895,0.1276013,0.000037129186,0.035969652,0.00008327601],"about_ca_topic_score_codex":0.00014152165,"about_ca_topic_score_gemma":0.000014455822,"teacher_disagreement_score":0.8578936,"about_ca_system_score_codex":0.000014722858,"about_ca_system_score_gemma":0.000016921163,"threshold_uncertainty_score":0.22080472},"labels":[],"label_agreement":null},{"id":"W2155807206","doi":"10.1128/iai.71.2.845-849.2003","title":"Induction by Sphingomyelinase of Shiga Toxin Receptor and Shiga Toxin 2 Sensitivity in Human Microvascular Endothelial Cells","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Sphingolipid Metabolism and Signaling","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Globotriaosylceramide; Shiga toxin; Sphingomyelin; Biology; Ceramide; Sphingomyelin phosphodiesterase; Microbiology; Endothelial stem cell; Lipopolysaccharide; Shiga-like toxin; Molecular biology; Biochemistry; Escherichia coli; Immunology; Apoptosis; Internal medicine; Medicine; Cholesterol; Fabry disease; In vitro","score_opus":0.007728907291224257,"score_gpt":0.2277487436466441,"score_spread":0.22001983635541986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155807206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847704,0.0005412475,0.00043086745,0.000011890178,0.00022243074,0.00013490015,0.000016718897,0.000009117364,0.00015580509],"genre_scores_gemma":[0.9988599,0.00072433194,0.0001316669,0.00006817955,0.00008485398,0.00000529018,0.000044765726,0.000012360437,0.000068684974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990451,0.00030520014,0.00021770746,0.00021691009,0.00006706854,0.00014802886],"domain_scores_gemma":[0.9996074,0.000014935691,0.00008606647,0.00018714661,0.00004926757,0.000055202177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007590358,0.00013491929,0.00018456452,0.000071208095,0.00013103176,0.000023275014,0.000028436521,0.00016757073,0.000020342186],"category_scores_gemma":[0.00010615467,0.00014215383,0.000055447177,0.00009937735,0.00009674829,0.00001530544,0.000042956275,0.00018519044,8.8471586e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030059682,0.000098500976,0.0064499686,0.000025498617,0.000020291402,4.0008928e-7,0.0001469559,0.000011511422,0.9919532,0.000055589273,0.00008908732,0.0011189658],"study_design_scores_gemma":[0.0009120951,0.00010281343,0.00815642,0.000017175224,0.00001437337,0.000015289022,0.00010915146,0.0000066817047,0.9765063,0.00003544328,0.013978524,0.00014573651],"about_ca_topic_score_codex":0.0014927075,"about_ca_topic_score_gemma":0.0001977939,"teacher_disagreement_score":0.015446874,"about_ca_system_score_codex":0.000011132794,"about_ca_system_score_gemma":0.000022029204,"threshold_uncertainty_score":0.5796865},"labels":[],"label_agreement":null},{"id":"W2155855273","doi":"10.1128/iai.01408-09","title":"Blood Transfusion Alters the Course and Outcome of <i>Plasmodium chabaudi</i> AS Infection in Mice","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital","funders":"","keywords":"Parasitemia; Plasmodium chabaudi; Biology; Anemia; Blood transfusion; Immunology; Gametocyte; Malaria; Hemoglobin; Immunity; Red blood cell; Physiology; Internal medicine; Medicine; Plasmodium falciparum; Immune system","score_opus":0.011939785917473822,"score_gpt":0.29001615526485697,"score_spread":0.27807636934738317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155855273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958228,0.00007737209,0.000044888842,0.0019771701,0.0001721242,0.00035786975,0.0000014705312,0.000018326979,0.0015280097],"genre_scores_gemma":[0.99844515,0.0011857406,0.000007000605,0.00019168353,0.000038007587,0.000017622977,0.0000036137192,0.000005698032,0.00010549835],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99938565,0.000105382205,0.00017405718,0.000097121236,0.00011394011,0.00012385067],"domain_scores_gemma":[0.99957794,0.00009263205,0.000045786182,0.0001442336,0.000067959,0.000071447495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055046135,0.00007999803,0.00015522778,0.00007740417,0.00011954444,0.000016318145,0.00002494328,0.000087446075,0.00007215086],"category_scores_gemma":[0.00017402406,0.000056027377,0.0000402309,0.0001420666,0.00013148144,0.000089051246,0.000022596629,0.00060353184,0.0000027282695],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029451345,0.00034910275,0.78933346,0.0000780886,0.00004081525,0.0000030341691,0.00029868504,0.0000011068287,0.20227434,0.00043838788,0.00001777412,0.0068707187],"study_design_scores_gemma":[0.0028213593,0.00045416283,0.98288244,0.00002436346,0.00006881243,0.00014543932,0.000042577944,0.00021963284,0.012330756,0.00009804037,0.0008571577,0.0000552429],"about_ca_topic_score_codex":0.0120910015,"about_ca_topic_score_gemma":0.004527728,"teacher_disagreement_score":0.19354902,"about_ca_system_score_codex":0.000006970466,"about_ca_system_score_gemma":0.000036770125,"threshold_uncertainty_score":0.9944876},"labels":[],"label_agreement":null},{"id":"W2155864303","doi":"10.1128/iai.02572-14","title":"Nonbinding Site-Directed Mutants of Transferrin Binding Protein B Exhibit Enhanced Immunogenicity and Protective Capabilities","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Toronto","funders":"","keywords":"Biology; Immunogenicity; Transferrin; Antigen; Immune system; Transferrin receptor; Mutant; Microbiology; Immunology; Biochemistry; Gene","score_opus":0.011443398427894541,"score_gpt":0.23069627612391166,"score_spread":0.21925287769601712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155864303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979867,0.00011097834,0.0004464333,0.000017139102,0.00029937946,0.0005380171,0.000027351884,0.00014158702,0.00043241214],"genre_scores_gemma":[0.99958986,0.00006209755,0.000031820167,0.000004304845,0.000018711953,0.000067566485,0.000023345481,0.000013024445,0.00018925828],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876326,0.00047997994,0.00031248876,0.0002161023,0.00001720781,0.00021095866],"domain_scores_gemma":[0.9994235,0.0001236432,0.00012432523,0.00018369863,0.0001227701,0.000022035829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043545314,0.0001845444,0.00032664897,0.00018483955,0.0004953225,0.000027714856,0.00004542287,0.00022151433,0.0002086262],"category_scores_gemma":[0.000222453,0.00016882157,0.000064078995,0.00020456655,0.00023399793,0.00020370776,0.000056078214,0.0003342367,0.000013701909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017578488,0.00010310885,0.005108833,0.000069080044,0.00008540822,3.5985952e-8,0.00097307557,5.621221e-7,0.9842299,0.00017788756,0.0000023182631,0.009073969],"study_design_scores_gemma":[0.0012557886,0.0005052932,0.0839826,0.00010078066,0.000033553668,0.000034487304,0.00018625379,0.000010881347,0.9129027,0.00015618019,0.00064565614,0.00018583382],"about_ca_topic_score_codex":0.0048542996,"about_ca_topic_score_gemma":0.00053633895,"teacher_disagreement_score":0.07887377,"about_ca_system_score_codex":0.00003384513,"about_ca_system_score_gemma":0.00002069305,"threshold_uncertainty_score":0.7338281},"labels":[],"label_agreement":null},{"id":"W2155876409","doi":"10.1128/iai.01704-07","title":"<i>Vibrio parahaemolyticus</i>Inhibition of Rho Family GTPase Activation Requires a Functional Chromosome I Type III Secretion System","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Virulence; Vibrio parahaemolyticus; GTPase; Secretion; Effector; Vibrio cholerae; CDC42; Cell biology; Type three secretion system; Microbiology; Small GTPase; Intracellular; Virulence factor; Gene; Genetics; Biochemistry; Signal transduction; Bacteria","score_opus":0.0291377116034202,"score_gpt":0.2543214230855843,"score_spread":0.2251837114821641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155876409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975715,0.00015229477,0.0009606053,0.000031895233,0.000179495,0.00018940233,0.000013130555,0.000031435004,0.00087024143],"genre_scores_gemma":[0.9985859,0.0007048351,0.000031777217,0.000039306484,0.00014543242,0.000021114838,0.00027905064,0.000010507031,0.00018211712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991875,0.0001384343,0.00021227094,0.000177507,0.0001472337,0.00013703584],"domain_scores_gemma":[0.9993491,0.000018302055,0.000119564604,0.00019022338,0.00027490398,0.000047889265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018108473,0.000120410885,0.00014757297,0.00007772651,0.00029939035,0.00001368788,0.000028999684,0.00011600918,0.000014817611],"category_scores_gemma":[0.00011839232,0.000115533585,0.00005459055,0.00015664996,0.0001656225,0.000027634878,0.00008416498,0.000109235196,0.0000058997744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003164127,0.00007023758,0.003589811,0.000078609875,0.000053952772,0.0000010387174,0.00007348807,0.000021318134,0.994787,0.000057597856,0.00065140065,0.00029917355],"study_design_scores_gemma":[0.0012979072,0.0008199616,0.3360843,0.0000926932,0.000018355955,0.00009524635,0.0001785881,0.00015318565,0.6567642,0.000018510049,0.0042834473,0.00019358592],"about_ca_topic_score_codex":0.0005680914,"about_ca_topic_score_gemma":0.000021502801,"teacher_disagreement_score":0.33802274,"about_ca_system_score_codex":0.000049304977,"about_ca_system_score_gemma":0.00007977808,"threshold_uncertainty_score":0.4711323},"labels":[],"label_agreement":null},{"id":"W2156047913","doi":"10.1128/iai.73.9.6026-6038.2005","title":"Identification of Group A <i>Streptococcus</i> Antigenic Determinants Upregulated In Vivo","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; In vivo; Gene; Antigen; Microbiology; Streptococcus; Streptococcus pyogenes; Immunology; Genetics; Bacteria; Staphylococcus aureus","score_opus":0.013979990665815192,"score_gpt":0.29532666363614135,"score_spread":0.2813466729703262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156047913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984597,0.00007415104,0.00007179905,0.000026377957,0.00007241043,0.00039775344,0.0000051127563,0.00004095997,0.00085171673],"genre_scores_gemma":[0.9994735,0.00018687491,0.000026233367,0.000024685614,0.000021512853,0.000041666426,0.000007579266,0.000007511963,0.0002104521],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99930584,0.000049878505,0.00033451422,0.00013334033,0.000067678884,0.0001087562],"domain_scores_gemma":[0.9995489,0.000024496974,0.00010904531,0.00021126441,0.000059618138,0.000046681704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014181732,0.000093966046,0.00017966233,0.00018063928,0.000074427866,0.000011634773,0.000019095382,0.00008020608,0.00015226637],"category_scores_gemma":[0.00003857086,0.0000854171,0.000059850634,0.00029333238,0.00006368,0.00015336886,0.00002039066,0.00011408333,0.000012389474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038936803,0.00057114137,0.8288487,0.00003020348,0.000027973594,0.0000012238918,0.00008977092,0.0000054998595,0.14485915,0.000019861935,0.000021631586,0.02548588],"study_design_scores_gemma":[0.0012842462,0.0001655585,0.82630885,0.00006129356,0.00003573984,0.000033244938,0.000015314612,0.00053435686,0.1707834,0.00003059646,0.0006891129,0.00005825761],"about_ca_topic_score_codex":0.0008426273,"about_ca_topic_score_gemma":0.00031984498,"teacher_disagreement_score":0.025924256,"about_ca_system_score_codex":0.000057456633,"about_ca_system_score_gemma":0.000016453589,"threshold_uncertainty_score":0.34832084},"labels":[],"label_agreement":null},{"id":"W2156294659","doi":"10.1128/iai.00812-09","title":"Comparative Study of the Ability of<i>Leishmania mexicana</i>Promastigotes and Amastigotes To Alter Macrophage Signaling and Functions","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Amastigote; Biology; Leishmania; Leishmania major; Protein subunit; Cell biology; Signal transduction; Biochemistry; Parasite hosting; Gene","score_opus":0.030402546536635683,"score_gpt":0.3186566573866132,"score_spread":0.28825411084997754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156294659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984802,0.00008724682,0.000035913916,0.00022573654,0.000093371185,0.0006907067,0.000008774492,0.000015659598,0.00036239362],"genre_scores_gemma":[0.9997693,0.00002333394,0.00009227911,0.000029508874,0.000024109051,0.000023034101,8.6869676e-7,0.000005466513,0.000032132426],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991349,0.00018719067,0.00023103721,0.00016681058,0.00016461361,0.00011544477],"domain_scores_gemma":[0.9990331,0.00029076482,0.00008085855,0.00025298187,0.00024900996,0.00009326966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042118548,0.00011094172,0.00031756554,0.000092003545,0.00032650007,0.000019640953,0.00004004999,0.000039022623,0.000031531512],"category_scores_gemma":[0.00046229712,0.0000748966,0.000031696127,0.00023567704,0.00042973677,0.00008008034,0.00019837539,0.00038508457,8.044501e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009102328,0.00035699148,0.5778171,0.00006845463,0.00010007938,3.2704338e-7,0.0030666883,0.0000032197881,0.4173701,0.000024927967,0.000038828246,0.0010622717],"study_design_scores_gemma":[0.00074091536,0.00094521214,0.95323294,0.000034851786,0.00006833478,0.00001458409,0.0023628767,0.000057810532,0.04229616,0.000053686934,0.00013329944,0.000059296843],"about_ca_topic_score_codex":0.0033142136,"about_ca_topic_score_gemma":0.0013518429,"teacher_disagreement_score":0.3754159,"about_ca_system_score_codex":0.000011200892,"about_ca_system_score_gemma":0.000024913827,"threshold_uncertainty_score":0.5010122},"labels":[],"label_agreement":null},{"id":"W2156305611","doi":"10.1128/iai.74.1.225-238.2006","title":"Comparison of Gamma Interferon-Mediated Antichlamydial Defense Mechanisms in Human and Mouse Cells","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Interferon gamma; Immunology; Interferon; Virology; Immune system","score_opus":0.031065251702080573,"score_gpt":0.3335722628470581,"score_spread":0.3025070111449775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156305611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982731,0.0002631821,0.00029659786,0.000044044256,0.00016429264,0.00021968626,0.000007592531,0.0000427479,0.0006888111],"genre_scores_gemma":[0.99943614,0.00016187949,0.00003690853,0.000012367961,0.000013286292,0.000011096739,0.000027576796,0.000009553086,0.0002911904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887043,0.00040129182,0.00031395894,0.00019183048,0.000030164629,0.00019235011],"domain_scores_gemma":[0.9994385,0.00014410843,0.000093452334,0.0002125558,0.00009032109,0.000021038428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004883542,0.00011950123,0.0002592628,0.00031772262,0.00018467936,0.00001613027,0.000055051794,0.00017437244,0.00022861289],"category_scores_gemma":[0.00013918424,0.00011681782,0.00003229726,0.00017519707,0.00028686304,0.00015931495,0.0000941015,0.00054966914,0.000054878063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010668769,0.0005417449,0.058556233,0.000019572437,0.000040070587,2.4904972e-7,0.0007089403,0.000018431861,0.9361259,0.00034481558,0.000068221656,0.0034691477],"study_design_scores_gemma":[0.001089859,0.0005521992,0.1543764,0.000016477115,0.0000111723175,0.000022829337,0.00020460457,0.000033590157,0.84196126,0.00009927134,0.0015194971,0.0001128443],"about_ca_topic_score_codex":0.0018139748,"about_ca_topic_score_gemma":0.00064291025,"teacher_disagreement_score":0.09582017,"about_ca_system_score_codex":0.00004521643,"about_ca_system_score_gemma":0.000018878543,"threshold_uncertainty_score":0.47636923},"labels":[],"label_agreement":null},{"id":"W2156503894","doi":"10.1128/iai.00287-09","title":"Viral Booster Vaccines Improve <i>Mycobacterium bovis</i> BCG-Induced Protection against Bovine Tuberculosis","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":243,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Wellcome Trust; World Health Organization","keywords":"Vaccination; Mycobacterium bovis; Virology; Tuberculosis; Biology; Mycobacterium tuberculosis; Tuberculosis vaccines; Modified vaccinia Ankara; BCG vaccine; Heterologous; Immunology; Vaccinia; Booster dose; Virus; Recombinant DNA; Titer; Medicine","score_opus":0.023327212645085176,"score_gpt":0.29767762848488594,"score_spread":0.27435041583980074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156503894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987982,0.000117161995,0.00011339933,0.006655207,0.00035180582,0.0006652767,0.0000060782913,0.00019035852,0.003918743],"genre_scores_gemma":[0.9939993,0.00085728604,0.000039929495,0.0042045936,0.0003730757,0.000047907623,0.00005625261,0.000017422817,0.00040420276],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984392,0.00030863436,0.00037361565,0.00030497185,0.00015178586,0.00042180164],"domain_scores_gemma":[0.99904925,0.00005124348,0.000095948264,0.000373267,0.00018892133,0.00024137965],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054178335,0.00023504434,0.00039966035,0.00022302546,0.00029534745,0.000052761192,0.00005148775,0.00023901027,0.00007439811],"category_scores_gemma":[0.00052864343,0.00017324278,0.00014454548,0.00023821103,0.00004533848,0.0003271675,0.000058895435,0.0007222671,0.00006152665],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008279026,0.0003551068,0.020690357,0.000082424034,0.00009485777,0.000006939063,0.00010270625,8.5910744e-7,0.7856274,0.000021655356,0.0017668388,0.19042295],"study_design_scores_gemma":[0.0025101453,0.0049577584,0.8976718,0.00007839192,0.000086894404,0.0002365646,0.000038175982,0.00064719433,0.064271584,0.00019783856,0.028988468,0.00031516177],"about_ca_topic_score_codex":0.0016407016,"about_ca_topic_score_gemma":0.00010596077,"teacher_disagreement_score":0.87698144,"about_ca_system_score_codex":0.000117332405,"about_ca_system_score_gemma":0.000049288097,"threshold_uncertainty_score":0.7064636},"labels":[],"label_agreement":null},{"id":"W2156506096","doi":"10.1128/iai.01083-10","title":"Bifunctional Role of the<i>Treponema pallidum</i>Extracellular Matrix Binding Adhesin Tp0751","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canada Research Chairs; Michael Smith Health Research BC","keywords":"Bacterial adhesin; Biology; Treponema; Metalloproteinase; Recombinant DNA; Proteases; Microbiology; Escherichia coli; Biochemistry; Molecular biology; Matrix metalloproteinase; Enzyme; Virology; Gene","score_opus":0.012644724965146134,"score_gpt":0.26368764332433003,"score_spread":0.2510429183591839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156506096","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974255,0.0004613652,0.0000075979538,0.00025495802,0.00041605326,0.0001874666,0.0000069679595,0.000030814066,0.0012092756],"genre_scores_gemma":[0.9991874,0.000116492076,0.000057274847,0.000026101388,0.00007396141,0.000016654883,0.000012562855,0.000008765216,0.00050078175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994321,0.000049376933,0.00017977093,0.00010530153,0.00013502307,0.00009846165],"domain_scores_gemma":[0.9994738,0.00007565178,0.000068320725,0.00025237948,0.00007403307,0.00005581476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020125258,0.000094096366,0.00014583253,0.000075169715,0.00019090521,0.000015277856,0.000029312105,0.00008747822,0.00042634265],"category_scores_gemma":[0.000112228154,0.000064107575,0.000106342944,0.00015765757,0.00008481598,0.000058461606,0.00003659833,0.00027033695,0.000021230955],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026613427,0.00039293565,0.73168004,0.000018202618,0.00005423491,8.303165e-7,0.00008903395,8.8564195e-7,0.2634304,0.0010609033,0.00006836374,0.0031775788],"study_design_scores_gemma":[0.0007215686,0.00013630927,0.8830494,0.000038917253,0.000090442445,0.00010523532,0.000059341663,0.000036619116,0.1005967,0.00019938449,0.01490715,0.00005891426],"about_ca_topic_score_codex":0.00075247604,"about_ca_topic_score_gemma":0.00016045851,"teacher_disagreement_score":0.16283368,"about_ca_system_score_codex":0.000021954578,"about_ca_system_score_gemma":0.000039396535,"threshold_uncertainty_score":0.46681532},"labels":[],"label_agreement":null},{"id":"W2156606945","doi":"10.1128/iai.01246-13","title":"Functional Roles for C5a and C5aR but Not C5L2 in the Pathogenesis of Human and Experimental Cerebral Malaria","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research","keywords":"Plasmodium berghei; C5a receptor; Pathogenesis; Immunology; Biology; Cerebral Malaria; Chemokine; Tumor necrosis factor alpha; Immune system; Proinflammatory cytokine; Inflammation; Anaphylatoxin; Complement system; Malaria; Plasmodium falciparum","score_opus":0.02683235964328514,"score_gpt":0.2883297971225975,"score_spread":0.26149743747931237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156606945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99802315,0.0002387934,0.000058635454,0.0008592525,0.00002537836,0.00046053668,0.00001034339,0.000007112332,0.00031681964],"genre_scores_gemma":[0.9994405,0.000031537842,0.000024637016,0.00017325391,0.000044441564,0.00011326226,0.000013978101,0.0000043130995,0.0001540692],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995186,0.00009338624,0.0001159691,0.00008543403,0.0000869751,0.00009968455],"domain_scores_gemma":[0.9997027,0.00007617964,0.00002878763,0.000091355665,0.00005458324,0.000046388097],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026857128,0.00006248035,0.00011979776,0.00006644957,0.00012432334,0.000024498875,0.000018492925,0.0000490146,0.0001331719],"category_scores_gemma":[0.000050069633,0.00004481357,0.000026745896,0.00004161576,0.00009085613,0.00009121465,0.000028756715,0.000113802365,0.000001108573],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005217505,0.00034108316,0.12430222,0.000094917785,0.000055044435,9.0197096e-7,0.0005589783,4.5427046e-7,0.8629695,0.003401353,0.0003175282,0.007436244],"study_design_scores_gemma":[0.002474093,0.0005803413,0.9852947,0.000013087796,0.000016177595,0.000029930423,0.00085293874,0.0002353492,0.010121621,0.0001935495,0.0001440131,0.000044217995],"about_ca_topic_score_codex":0.0023014117,"about_ca_topic_score_gemma":0.000116485484,"teacher_disagreement_score":0.86099243,"about_ca_system_score_codex":0.000010023628,"about_ca_system_score_gemma":0.000015413709,"threshold_uncertainty_score":0.34790614},"labels":[],"label_agreement":null},{"id":"W2156652440","doi":"10.1128/iai.00985-10","title":"Joint Effects of Host Genetic Background and Mycobacterial Pathogen on Susceptibility to Infection","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Heart, Lung, and Blood Institute; National Institute for Health and Care Research; Howard Hughes Medical Institute","keywords":"Biology; Pathogen; Phenotype; Immune system; Mycobacterium tuberculosis; Chemokine; Host (biology); Immunology; Microbiology; Mycobacterium bovis; Gene; Tuberculosis; Virology; Genetics; Medicine","score_opus":0.06488638287819169,"score_gpt":0.31958016606806705,"score_spread":0.25469378318987534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156652440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99807066,0.00004874228,0.00015464252,0.000067795336,0.0002677648,0.00044242345,0.000004075218,0.000030537594,0.00091334584],"genre_scores_gemma":[0.9989202,0.0005642517,0.00012809169,0.00024901575,0.000081435835,0.000020605032,0.000007867814,0.000008401147,0.000020114141],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989557,0.00037675808,0.00022471802,0.00018419471,0.00007963551,0.00017896849],"domain_scores_gemma":[0.9993055,0.00012497211,0.000053678094,0.00024008578,0.00009127466,0.00018448565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046183344,0.00011261335,0.00027656613,0.00014735504,0.00009732453,0.0000084415815,0.000017441034,0.00011365147,0.00011259305],"category_scores_gemma":[0.00070774945,0.000093076975,0.000053411775,0.000121964826,0.00011525234,0.000057363413,0.00006578411,0.00022244353,0.000022035762],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005686658,0.00032589643,0.6024436,0.0002620867,0.00005307678,0.0000030928284,0.00035066236,2.9809667e-7,0.38395455,0.00005726678,0.000107771215,0.011873067],"study_design_scores_gemma":[0.0008148633,0.003553481,0.97103715,0.00006396945,0.00003327,0.00004185237,0.000013547077,0.000011801227,0.023642322,0.00009556937,0.000616775,0.00007537745],"about_ca_topic_score_codex":0.0074369973,"about_ca_topic_score_gemma":0.00038883626,"teacher_disagreement_score":0.3685936,"about_ca_system_score_codex":0.0000479813,"about_ca_system_score_gemma":0.000024176868,"threshold_uncertainty_score":0.99917257},"labels":[],"label_agreement":null},{"id":"W2156908798","doi":"10.1128/iai.00194-15","title":"The CpxRA Two-Component System Is Essential for Citrobacter rodentium Virulence","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"University of British Columbia","keywords":"Citrobacter rodentium; Biology; Virulence; Microbiology; Type three secretion system; Pathogen; Enteropathogenic Escherichia coli; Complementation; Escherichia coli; Citrobacter; Enterobacteriaceae; Gene; Phenotype; Genetics","score_opus":0.020841894740525245,"score_gpt":0.3044584777124994,"score_spread":0.2836165829719742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156908798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99491423,0.0006789968,0.0025818485,0.00016924278,0.00038294183,0.00022109298,0.000007630849,0.000015646823,0.0010283472],"genre_scores_gemma":[0.9986962,0.00046419477,0.00005101446,0.000067863446,0.00017153927,0.00007058132,0.000012541844,0.000007149859,0.00045893193],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994114,0.00011452405,0.00010391857,0.00012588043,0.00008805599,0.00015621274],"domain_scores_gemma":[0.9994725,0.000023109802,0.000043087493,0.00020807786,0.00019594186,0.00005730063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042301018,0.00007976683,0.000072412426,0.000015359357,0.00038561635,0.00007127205,0.00008137797,0.00004349934,0.0000013013677],"category_scores_gemma":[0.00011614399,0.000058124402,0.000048899372,0.00004469172,0.00009912515,0.0000058581904,0.00016510024,0.000086183885,0.000004728848],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060313835,0.00016112094,0.021333808,0.00013477687,0.00033525532,7.866118e-7,0.00041130715,0.000023491555,0.95979595,0.0007040108,0.010424871,0.0060715005],"study_design_scores_gemma":[0.0035584222,0.0009394583,0.06519818,0.000052729658,0.000069697926,0.000035634148,0.0011285171,0.002377152,0.384574,0.00021518952,0.5413827,0.00046836285],"about_ca_topic_score_codex":0.00043386343,"about_ca_topic_score_gemma":0.00012683663,"teacher_disagreement_score":0.57522196,"about_ca_system_score_codex":0.00002308662,"about_ca_system_score_gemma":0.000038834543,"threshold_uncertainty_score":0.2965888},"labels":[],"label_agreement":null},{"id":"W2157281104","doi":"10.1128/iai.74.2.1416-1418.2006","title":"Immune Responses Induced in Cattle by Vaccination with a Recombinant Adenovirus Expressing Mycobacterial Antigen 85A and <i>Mycobacterium bovis</i> BCG","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"Vlaamse regering","keywords":"Mycobacterium bovis; Virology; Heterologous; Vaccination; Biology; Antigen; Immune system; BCG vaccine; Mycobacterium tuberculosis; Microbiology; Mycobacterium; Interferon gamma; Immunology; Tuberculosis; Medicine; Bacteria","score_opus":0.009968823771937058,"score_gpt":0.2359696939957137,"score_spread":0.22600087022377663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157281104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99626535,0.0020159,0.000040609993,0.000116289324,0.0007205041,0.00026355436,0.000020191415,0.000079854115,0.00047775742],"genre_scores_gemma":[0.9978125,0.0006960487,0.000012551176,0.00005408005,0.000022492253,0.000028095736,0.00013751024,0.000023052398,0.0012136798],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981988,0.0007597734,0.0003984401,0.00027650013,0.000037844235,0.0003286619],"domain_scores_gemma":[0.9993243,0.00016020467,0.0001786703,0.00023885489,0.00007723058,0.000020704649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004373534,0.0002509502,0.00033413485,0.00026478036,0.00039178994,0.0001067529,0.000080494305,0.00027128714,0.00015733921],"category_scores_gemma":[0.000089936686,0.0001998987,0.00003895793,0.00018898172,0.00012780436,0.0003897414,0.00010267641,0.00045082188,0.000024657118],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002661646,0.00024615147,0.028257105,0.000021878626,0.000035886027,0.0000023031262,0.0003575009,2.579815e-7,0.9618922,0.000028736737,0.00045982603,0.0060365284],"study_design_scores_gemma":[0.0023699931,0.00056657445,0.56486887,0.000078460354,0.000015115219,0.00018695998,0.00012491895,0.0000014097174,0.41632187,0.00002217082,0.015221676,0.00022199603],"about_ca_topic_score_codex":0.0093263555,"about_ca_topic_score_gemma":0.00038487688,"teacher_disagreement_score":0.5455703,"about_ca_system_score_codex":0.00007461983,"about_ca_system_score_gemma":0.000060609902,"threshold_uncertainty_score":0.99727064},"labels":[],"label_agreement":null},{"id":"W2157335840","doi":"10.1128/iai.00258-06","title":"The <i>yjeQ</i> Gene Is Required for Virulence of <i>Staphylococcus aureus</i>","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McMaster University","funders":"","keywords":"Virulence; Staphylococcus aureus; Biology; Microbiology; In vivo; Antimicrobial; Strain (injury); Staphylococcal infections; Gene; Antibiotics; Staphylococcus; Bacteria; Genetics","score_opus":0.014463979696577246,"score_gpt":0.27088192209082057,"score_spread":0.2564179423942433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157335840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99205685,0.000948142,0.0025246947,0.00050952786,0.00021011646,0.00058027793,0.00004741182,0.00004731291,0.0030756812],"genre_scores_gemma":[0.99746674,0.00072408083,0.00032589037,0.0004491268,0.00010602174,0.000034988225,0.000014797563,0.000015762864,0.00086256117],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991556,0.000047214224,0.0003190697,0.0001482383,0.00012410004,0.0002057829],"domain_scores_gemma":[0.9989908,0.00019453978,0.00016316178,0.00035547843,0.00025261287,0.00004346211],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032596342,0.00012725427,0.00021311107,0.00005169847,0.00039376962,0.000026817206,0.00007034564,0.00009107757,0.000014300333],"category_scores_gemma":[0.00012844159,0.00009462212,0.00012570746,0.00020004797,0.00031461543,0.000079916645,0.000039134487,0.00015500047,0.0000038121245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053866324,0.00018543395,0.022181574,0.00013988985,0.00005252817,0.0000013708054,0.000101015474,0.0000046565888,0.95362604,0.00073169963,0.017025294,0.0054118163],"study_design_scores_gemma":[0.0016902059,0.0003734661,0.0884666,0.000092646675,0.000092279806,0.000015862606,0.000056886984,0.000089503985,0.71570224,0.001452981,0.1917934,0.00017394712],"about_ca_topic_score_codex":0.0011107688,"about_ca_topic_score_gemma":0.00014662929,"teacher_disagreement_score":0.23792385,"about_ca_system_score_codex":0.00003791244,"about_ca_system_score_gemma":0.00006103993,"threshold_uncertainty_score":0.38585782},"labels":[],"label_agreement":null},{"id":"W2157516595","doi":"10.1128/iai.01070-08","title":"Involvement of SOCS3 in Regulation of CD11c <sup>+</sup> Dendritic Cell-Derived Osteoclastogenesis and Severe Alveolar Bone Loss","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health","keywords":"RANKL; Bone resorption; SOCS3; CD11c; Biology; Inflammation; Cell biology; Nod; Immunology; Cancer research; Dendritic cell; Osteoclast; Cytokine; Signal transduction; Immune system; In vivo; Endocrinology; Receptor; STAT3; Activator (genetics)","score_opus":0.007378111567422724,"score_gpt":0.22004367932621352,"score_spread":0.2126655677587908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157516595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99772185,0.001815691,0.00010487187,0.0000263876,0.000020900143,0.00011002956,0.000014121935,0.0000040233504,0.00018209839],"genre_scores_gemma":[0.9987992,0.00093567185,0.000076928685,0.000058746118,0.000018404391,0.0000034455484,0.000057242352,0.000004614285,0.000045722394],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993658,0.00012069651,0.00023077504,0.00012830146,0.00006788187,0.000086552056],"domain_scores_gemma":[0.9996155,0.000010644337,0.00009077629,0.00016947766,0.00007400936,0.000039629773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016226165,0.000090266774,0.00015870213,0.00006490428,0.000048684404,0.000007608783,0.000028153781,0.000086469256,0.000014740812],"category_scores_gemma":[0.000044752218,0.00009063641,0.00004606726,0.00008141425,0.00007547065,0.000011025292,0.000039803424,0.000047205747,3.75007e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012617266,0.00023104795,0.09272935,0.00008116263,0.000013080146,3.7149712e-7,0.00019587766,0.00018272059,0.9021891,0.000035608115,0.0000411505,0.004174399],"study_design_scores_gemma":[0.00093077647,0.00020125453,0.6238665,0.00001933432,0.000025134677,0.000006238429,0.00014579129,0.00007282764,0.3741399,0.00016345219,0.00034364348,0.000085133346],"about_ca_topic_score_codex":0.000295196,"about_ca_topic_score_gemma":0.000046162437,"teacher_disagreement_score":0.53113717,"about_ca_system_score_codex":0.000005387472,"about_ca_system_score_gemma":0.000026432926,"threshold_uncertainty_score":0.36960456},"labels":[],"label_agreement":null},{"id":"W2157596901","doi":"10.1128/iai.73.6.3453-3461.2005","title":"Gamma Interferon Positively Modulates<i>Actinobacillus actinomycetemcomitans</i>-Specific RANKL<sup>+</sup>CD4<sup>+</sup>Th-Cell-Mediated Alveolar Bone Destruction In Vivo","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bone Metabolism and Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; National Institutes of Health; University of Rochester","keywords":"RANKL; Nod; Interferon gamma; Biology; Immunology; Cancer research; Periodontitis; In vivo; Medicine; Cytokine; Activator (genetics); Receptor; Internal medicine","score_opus":0.008524760274749152,"score_gpt":0.21657848796077842,"score_spread":0.20805372768602926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157596901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946288,0.0025675802,0.00051069335,0.00010260565,0.00016466559,0.00036626818,0.000086692286,0.000078284276,0.0014944193],"genre_scores_gemma":[0.995435,0.0031918485,0.00018326337,0.00024222367,0.00033638958,0.00004108673,0.00026189393,0.000045643625,0.00026265686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978439,0.00044056732,0.000527213,0.00054576964,0.00018366938,0.00045887253],"domain_scores_gemma":[0.9988914,0.000065197804,0.0001773641,0.00049316714,0.00015845569,0.0002144048],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038208129,0.0004101176,0.00038724102,0.0002390468,0.0003205821,0.00011191819,0.00014312338,0.00036673932,0.00018224714],"category_scores_gemma":[0.0001330679,0.00042813175,0.00018993256,0.00030367635,0.0001730517,0.000090984155,0.00016223335,0.00045674428,0.00004131037],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002219854,0.0011934903,0.050053168,0.00010942195,0.00015427414,0.00001389317,0.0009420955,0.004317245,0.9122294,0.00003656336,0.0016393006,0.02709127],"study_design_scores_gemma":[0.010229434,0.0011528535,0.13969298,0.00014120404,0.00019844946,0.00037832523,0.0013441057,0.006593908,0.68187094,0.00007291149,0.15665191,0.0016729862],"about_ca_topic_score_codex":0.0007243498,"about_ca_topic_score_gemma":0.00008151666,"teacher_disagreement_score":0.2303585,"about_ca_system_score_codex":0.00009092142,"about_ca_system_score_gemma":0.00007016021,"threshold_uncertainty_score":0.9998171},"labels":[],"label_agreement":null},{"id":"W2157823159","doi":"10.1128/iai.73.5.2974-2985.2005","title":"Induction of Strain-Transcending Immunity against<i>Plasmodium chabaudi adami</i>Malaria with a Multiepitope DNA Vaccine","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université du Québec à Montréal","funders":"Fonds Québécois de la Recherche sur la Nature et les Technologies; Monash University; McGill University","keywords":"Plasmodium chabaudi; Biology; ORFS; Virology; DNA vaccination; Plasmid; Malaria vaccine; Immunity; Malaria; Plasmodium falciparum; Heterologous; Immunogenicity; Antigen; Microbiology; Genetics; Immune system; Open reading frame; Peptide sequence; Immunology; DNA; Gene; Parasitemia","score_opus":0.015934452075392277,"score_gpt":0.26655894507242966,"score_spread":0.2506244929970374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157823159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933018,0.00016510056,0.0010434007,0.0018657898,0.00010326331,0.00054672593,0.000016018828,0.00008273015,0.002875182],"genre_scores_gemma":[0.99864525,0.00047687808,0.00025641377,0.00016281534,0.00015387381,0.00002582039,0.000052539337,0.000019578476,0.00020682444],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99874526,0.00021060396,0.00031579603,0.00018078135,0.00025405633,0.00029351958],"domain_scores_gemma":[0.99903643,0.00006937739,0.00013103463,0.00033725263,0.0002520822,0.00017384179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005796366,0.0001894388,0.00035246552,0.0002441915,0.00027189442,0.000029987785,0.00006534731,0.00014532355,0.00021427897],"category_scores_gemma":[0.00015441951,0.00015368413,0.00008290238,0.0003076002,0.00009129804,0.00031219234,0.00003774892,0.0007684321,0.0000084465055],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039921743,0.0015425014,0.050785277,0.0003796826,0.00056575856,0.000012077427,0.0013571049,0.00012044366,0.75779986,0.0010775515,0.00015055362,0.18221703],"study_design_scores_gemma":[0.008661957,0.0015263067,0.94162154,0.00020678177,0.0001265505,0.00014427204,0.00037622463,0.0015664026,0.041319445,0.000027501823,0.00419214,0.00023085665],"about_ca_topic_score_codex":0.0013902831,"about_ca_topic_score_gemma":0.00042051208,"teacher_disagreement_score":0.8908363,"about_ca_system_score_codex":0.0000841326,"about_ca_system_score_gemma":0.00011919542,"threshold_uncertainty_score":0.62670565},"labels":[],"label_agreement":null},{"id":"W2157947948","doi":"10.1128/iai.72.6.3310-3314.2004","title":"Cystathionine β-Lyase Is Important for Virulence of<i>Salmonella enterica</i>Serovar Typhimurium","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cancer Research and Treatments","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McMaster University","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Cystathionine beta synthase; Virulence; Biology; Methionine; Lyase; Biochemistry; Cystathionine gamma-lyase; Salmonella enterica; Microbiology; Schizosaccharomyces pombe; Salmonella; Cysteine; Enterobacteriaceae; Enzyme; Bacteria; Yeast; Amino acid; Gene; Escherichia coli; Saccharomyces cerevisiae; Genetics","score_opus":0.01253245371854892,"score_gpt":0.2952478085962345,"score_spread":0.28271535487768557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157947948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972257,0.0005922559,0.0015921876,0.0000742291,0.0000648899,0.0001799694,0.00006977544,0.0000067295364,0.00019425116],"genre_scores_gemma":[0.99754083,0.0019092815,0.0002003363,0.00010780873,0.000032726897,0.000029238221,0.00007284834,0.000007372967,0.00009957065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995566,0.00001887641,0.0001267173,0.00012597257,0.000053475087,0.00011833959],"domain_scores_gemma":[0.99964035,0.0000055107275,0.000057416502,0.0001659317,0.00007659996,0.000054214437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009546381,0.000075686345,0.00008353917,0.000028547078,0.000089384805,0.000010785646,0.000038956037,0.000047597005,0.00001447997],"category_scores_gemma":[0.000037466976,0.00006848761,0.000058112815,0.000056317785,0.000061884995,0.000005014998,0.00004521304,0.000049290225,0.0000022007584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005851442,0.00041420435,0.02375078,0.00007675761,0.00013938175,0.0000025713407,0.000121534504,0.00001349664,0.97021484,0.00009636821,0.0004731584,0.0041117696],"study_design_scores_gemma":[0.0023622664,0.0016058632,0.026549324,0.00002331609,0.000021913842,0.00003338672,0.000026482141,0.000014308487,0.9487165,0.00051469094,0.020004138,0.00012780927],"about_ca_topic_score_codex":0.0016745997,"about_ca_topic_score_gemma":0.00012753134,"teacher_disagreement_score":0.021498334,"about_ca_system_score_codex":0.000015818685,"about_ca_system_score_gemma":0.000051908166,"threshold_uncertainty_score":0.27928436},"labels":[],"label_agreement":null},{"id":"W2158005571","doi":"10.1128/iai.01829-06","title":"The <i>Escherichia coli</i> Enterotoxin STb Permeabilizes Piglet Jejunal Brush Border Membrane Vesicles","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Valinomycin; Vesicle; Ionophore; Biology; Brush border; Membrane potential; Membrane; Biophysics; Biochemistry; Escherichia coli; Depolarization; Apical membrane","score_opus":0.00938791946471167,"score_gpt":0.24835700508907466,"score_spread":0.23896908562436298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158005571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945295,0.00067949825,0.00024826333,0.0003149442,0.0006934098,0.00020829152,0.000011047898,0.000089465015,0.0032256122],"genre_scores_gemma":[0.996431,0.0008904505,0.000020280444,0.0004713655,0.000062490835,0.00000887142,0.000021630001,0.000013461214,0.0020804764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990333,0.00020969365,0.00024399022,0.00015560309,0.00002927261,0.00032817488],"domain_scores_gemma":[0.99932396,0.0002781629,0.00009746905,0.00020697131,0.00006904653,0.000024382007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060143066,0.00016583684,0.00017706983,0.000049109924,0.0011477906,0.00007935202,0.00010382615,0.00015678149,0.0003158911],"category_scores_gemma":[0.00007837928,0.00012131435,0.000085126296,0.00010958904,0.00056369347,0.00017902692,0.00009063127,0.00044704205,0.000079347854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021064357,0.00010784055,0.0059172735,0.000014939236,0.00009199452,6.384284e-7,0.0003959405,0.0000013657294,0.9788371,0.0005249812,0.0016439782,0.012253328],"study_design_scores_gemma":[0.0010166306,0.00023212262,0.18526265,0.00002901867,0.00003169465,0.000053275282,0.0009272285,0.0000028589752,0.47137034,0.00012079936,0.3407236,0.0002297803],"about_ca_topic_score_codex":0.0016881475,"about_ca_topic_score_gemma":0.00065307645,"teacher_disagreement_score":0.50746673,"about_ca_system_score_codex":0.000025563872,"about_ca_system_score_gemma":0.000025223342,"threshold_uncertainty_score":0.88279927},"labels":[],"label_agreement":null},{"id":"W2158105817","doi":"10.1128/iai.01004-08","title":"Immune Response and Alveolar Bone Resorption in a Mouse Model of<i>Treponema denticola</i>Infection","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"National Institutes of Health","keywords":"Treponema denticola; Immune system; Biology; Antibody; Splenocyte; Pathogenesis; Microbiology; Immunology; Periodontal pathogen; Bacteria; Porphyromonas gingivalis","score_opus":0.03537877447866587,"score_gpt":0.2953459491920063,"score_spread":0.2599671747133404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158105817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986329,0.00039008033,0.00044237153,0.000022551301,0.00014963033,0.0001768209,0.000026413138,0.00004264329,0.00011656876],"genre_scores_gemma":[0.996692,0.0017052495,0.000060225728,0.000015513484,0.000012523554,0.0000147300725,0.00001699641,0.000010845461,0.0014719318],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99859524,0.00064063194,0.00032814025,0.00017867751,0.000083346065,0.00017396455],"domain_scores_gemma":[0.9994241,0.00011569618,0.00009900576,0.00022228123,0.00009231112,0.000046634203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008857553,0.000116682575,0.00023052072,0.0003229201,0.00030014798,0.000026913032,0.000037590973,0.00020529675,0.000070180715],"category_scores_gemma":[0.0003359077,0.00012283413,0.00005970679,0.00022355455,0.00026151145,0.00030481204,0.0001028479,0.00042029363,0.000022708251],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008673161,0.00014354046,0.35088366,0.000035148634,0.000014164206,0.000008989988,0.00026295238,0.000036106485,0.6471936,0.000019033962,0.000029411378,0.0005060727],"study_design_scores_gemma":[0.0010989067,0.00016962225,0.91527236,0.000029054123,0.000007795732,0.00040304268,0.000017809367,0.0008692557,0.081670925,0.00006243564,0.00028311048,0.00011569018],"about_ca_topic_score_codex":0.008082425,"about_ca_topic_score_gemma":0.0021168059,"teacher_disagreement_score":0.5655227,"about_ca_system_score_codex":0.000049493414,"about_ca_system_score_gemma":0.00004208415,"threshold_uncertainty_score":0.9985228},"labels":[],"label_agreement":null},{"id":"W2158118590","doi":"10.1128/iai.00224-12","title":"Modulation of Toxin Production by the Flagellar Regulon in Clostridium difficile","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; Institute for Biological Sciences","funders":"National Research Council Canada","keywords":"Biology; Regulon; Virulence; Microbiology; Toxin; Clostridium difficile toxin A; Mutant; Clostridium difficile; Clostridium difficile toxin B; Gene; Clostridium; Flagellum; Molecular biology; Genetics; Bacteria; Antibiotics","score_opus":0.025634948829634234,"score_gpt":0.2932598748488942,"score_spread":0.26762492601925997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158118590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964145,0.0007103263,0.000030166737,0.00075202936,0.00022719026,0.00041633158,0.0000052106743,0.000027989101,0.001416254],"genre_scores_gemma":[0.99848974,0.00068939093,0.000009698574,0.000028246539,0.00015777869,0.00001770886,0.000039121413,0.0000117733025,0.00055654405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896574,0.00017046536,0.00027318762,0.0001283231,0.0002279694,0.00023433722],"domain_scores_gemma":[0.9993764,0.000067604116,0.00008074363,0.0002993771,0.00010230115,0.00007356576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006998729,0.00011182819,0.00018320116,0.0001364353,0.00013157644,0.000012370686,0.00003933029,0.00010362796,0.00008710707],"category_scores_gemma":[0.00031585377,0.00008376763,0.000053465254,0.00044286,0.000116288946,0.00014249573,0.000049851118,0.00036681772,0.000010456734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021796417,0.0007118476,0.058927976,0.00009993174,0.000024435712,3.5328068e-7,0.0005158666,0.000021081969,0.9234667,0.000042164345,0.00213406,0.01383761],"study_design_scores_gemma":[0.0006160902,0.00018687644,0.24823642,0.00004838993,0.000025354168,0.000042513,0.00020849111,0.00024564847,0.74522245,0.000014868123,0.0050700293,0.000082864746],"about_ca_topic_score_codex":0.001440606,"about_ca_topic_score_gemma":0.00005256222,"teacher_disagreement_score":0.18930843,"about_ca_system_score_codex":0.00010999962,"about_ca_system_score_gemma":0.000036704885,"threshold_uncertainty_score":0.3415945},"labels":[],"label_agreement":null},{"id":"W2158401596","doi":"10.1128/iai.69.5.3476-3482.2001","title":"<i>Escherichia coli</i>Heat-Labile Enterotoxin B Subunit Is a More Potent Mucosal Adjuvant than Its Closely Related Homologue, the B Subunit of Cholera Toxin","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cholera toxin; Heat-labile enterotoxin; Enterotoxin; Adjuvant; Biology; Microbiology; Escherichia coli; Recombinant DNA; Immunogenicity; Antibody; Immunology; Biochemistry","score_opus":0.01578910699725701,"score_gpt":0.27246116360273764,"score_spread":0.25667205660548065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158401596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946652,0.0015547528,0.00005115746,0.0009825118,0.00014567788,0.0005650684,0.000036981262,0.000031776606,0.0019668657],"genre_scores_gemma":[0.9927118,0.0051997337,0.000023560428,0.0005874044,0.000060158145,0.00010146468,0.00006397975,0.000024548444,0.00122736],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984323,0.00041235107,0.00033389384,0.00027676977,0.00020391039,0.00034081138],"domain_scores_gemma":[0.99895453,0.00004561321,0.00011462557,0.0004851222,0.00029919023,0.000100922596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050198694,0.0002375872,0.00025664683,0.00007411223,0.00040077322,0.00003923114,0.00022267665,0.00020220762,0.000079480065],"category_scores_gemma":[0.00021868125,0.0001838656,0.00013221723,0.00038401943,0.00033936492,0.000017661725,0.00033470528,0.00048566758,0.000011778088],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041709255,0.00060235773,0.06676355,0.00006893765,0.00035589086,0.00000875758,0.0013089575,0.000033328426,0.92668366,0.000043144613,0.0012650747,0.0024492492],"study_design_scores_gemma":[0.002210283,0.0016070025,0.6601406,0.00006267518,0.00007733316,0.00009673251,0.000605538,0.0005355671,0.2358201,0.000050715327,0.09836735,0.00042610575],"about_ca_topic_score_codex":0.0014840864,"about_ca_topic_score_gemma":0.00027094004,"teacher_disagreement_score":0.69086355,"about_ca_system_score_codex":0.000029010054,"about_ca_system_score_gemma":0.000081096754,"threshold_uncertainty_score":0.74978215},"labels":[],"label_agreement":null},{"id":"W2158438350","doi":"10.1128/iai.00850-10","title":"Full Virulence of <i>Pseudomonas aeruginosa</i> Requires OprF","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Centre National de la Recherche Scientifique","keywords":"Virulence; Pseudomonas aeruginosa; Microbiology; Biology; Pyocyanin; Porin; Quorum sensing; Type three secretion system; Virulence factor; Bacterial outer membrane; Pseudomonadaceae; Mutant; Pseudomonadales; Bacteria; Gene; Escherichia coli; Genetics","score_opus":0.0081006335356951,"score_gpt":0.23775358884858852,"score_spread":0.22965295531289343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158438350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755013,0.0000644541,0.000057351233,0.000042950596,0.00044208436,0.000050824594,0.00000635772,0.000010422146,0.0017753997],"genre_scores_gemma":[0.9992421,0.00025725446,0.00020976215,0.00008493965,0.00011328098,0.0000013234871,0.00002113559,0.0000060506272,0.00006412405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995902,0.000038084097,0.00012408661,0.000112535105,0.000038582264,0.00009650645],"domain_scores_gemma":[0.999622,0.000007811653,0.000064530985,0.0002059607,0.00006125632,0.000038444123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001436582,0.0000767572,0.000083391555,0.000023619355,0.0000967612,0.000016614109,0.00004274197,0.000119062206,0.00002702219],"category_scores_gemma":[0.000069358895,0.0000714373,0.000039480583,0.000046186273,0.00012769007,0.0000066780385,0.000071369424,0.00012975992,0.0000029834475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006343596,0.000032139706,0.0038530636,0.000009159188,0.000009380518,1.8495557e-7,0.000018744524,4.5998857e-7,0.990325,0.000105861654,0.000095496434,0.005487082],"study_design_scores_gemma":[0.0002247928,0.00024454502,0.033261437,0.000007798782,0.0000069640446,0.00003911101,0.000011437975,0.0000073760452,0.9409782,0.000027859604,0.025096081,0.00009438955],"about_ca_topic_score_codex":0.0005332632,"about_ca_topic_score_gemma":0.00024796053,"teacher_disagreement_score":0.049346782,"about_ca_system_score_codex":0.0000015831658,"about_ca_system_score_gemma":0.00001940637,"threshold_uncertainty_score":0.29131287},"labels":[],"label_agreement":null},{"id":"W2158493536","doi":"10.1128/iai.00961-13","title":"<i>In Vitro</i>Infection of Bovine Monocytes with Mycoplasma bovis Delays Apoptosis and Suppresses Production of Gamma Interferon and Tumor Necrosis Factor Alpha but Not Interleukin-10","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Tumor necrosis factor alpha; Bovine respiratory disease; Immune system; Interferon gamma; Microbiology; Immunology; Mycobacterium bovis; Interleukin; Cytokine; Medicine","score_opus":0.01413240631978242,"score_gpt":0.24570062447917293,"score_spread":0.23156821815939052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158493536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860054,0.00037586165,0.00007575032,0.00009030757,0.00022429465,0.00045138164,0.000047449645,0.00003427451,0.00010012984],"genre_scores_gemma":[0.9984621,0.00092379027,0.00003112414,0.00002273441,0.000014967473,0.000059271842,0.000036840283,0.000015274563,0.00043394175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882156,0.00024740316,0.0003631441,0.00028209365,0.000039255974,0.0002465283],"domain_scores_gemma":[0.99920076,0.000119082615,0.00017926455,0.00021195454,0.00024335143,0.00004560796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020129872,0.00020738832,0.00035842365,0.00036703792,0.00019790205,0.000046408684,0.00004466899,0.00013939502,0.00048346186],"category_scores_gemma":[0.0001272146,0.00017492713,0.000050562645,0.00022673683,0.00044307538,0.00051954965,0.00013467052,0.00030453407,0.0000131811685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012677549,0.00033471713,0.027389383,0.0002478991,0.000115710835,2.167437e-7,0.00036807993,0.0000024076369,0.96484905,0.000013404398,0.00026762355,0.005143764],"study_design_scores_gemma":[0.0011266831,0.0011481586,0.071284235,0.000099839046,0.00004772361,0.0001243364,0.00011502925,0.000022779346,0.9251445,0.000023417353,0.00070095883,0.00016234932],"about_ca_topic_score_codex":0.032480378,"about_ca_topic_score_gemma":0.0004923541,"teacher_disagreement_score":0.043894853,"about_ca_system_score_codex":0.00005538598,"about_ca_system_score_gemma":0.000050864466,"threshold_uncertainty_score":0.9739624},"labels":[],"label_agreement":null},{"id":"W2158496239","doi":"10.1128/iai.70.1.62-68.2002","title":"Reduced Infectivity of a<i>Leishmania donovani</i>Biopterin Transporter Genetic Mutant and Its Use as an Attenuated Strain for Vaccination","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Vlaamse regering","keywords":"Biology; Leishmania donovani; Infectivity; Kinetoplastida; Microbiology; Leishmania; Mutant; Virology; Temperature-sensitive mutant; Attenuated vaccine; Leishmaniasis; Parasite hosting; Genetics; Virulence; Immunology; Gene; Visceral leishmaniasis; Virus","score_opus":0.06299489935104509,"score_gpt":0.31873161295487884,"score_spread":0.25573671360383377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158496239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998268,0.0001302958,0.00015744171,0.00023921087,0.00006217146,0.00083214,0.000039723567,0.000057872036,0.00021314913],"genre_scores_gemma":[0.99838096,0.0012454322,0.0000999068,0.00006603772,0.000032920118,0.000045242014,0.000024312481,0.00001818858,0.000087010645],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990235,0.00013373689,0.0002796451,0.00022452562,0.00014408048,0.00019451886],"domain_scores_gemma":[0.9991293,0.00009852152,0.000099542594,0.00019975918,0.0003619662,0.0001109084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032122934,0.00015453072,0.00029442823,0.00018065562,0.00018762561,0.0000400534,0.000031206895,0.00009822491,0.00012390842],"category_scores_gemma":[0.00032871283,0.00014246047,0.000054559692,0.00019183697,0.000061561055,0.00042405847,0.000026108477,0.0002021859,0.0000028378217],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053653517,0.0011852382,0.16396703,0.00055389904,0.00026471747,0.000010833635,0.0017372549,0.000005505121,0.74258906,0.0001670606,0.000065588516,0.08891727],"study_design_scores_gemma":[0.002167353,0.0017206348,0.9639428,0.000048114343,0.000077426164,0.00010044693,0.000056184806,0.0014563497,0.029617557,0.00007438508,0.00060696097,0.00013177513],"about_ca_topic_score_codex":0.0008668133,"about_ca_topic_score_gemma":0.00028304732,"teacher_disagreement_score":0.7999758,"about_ca_system_score_codex":0.000046911886,"about_ca_system_score_gemma":0.000018177157,"threshold_uncertainty_score":0.5809369},"labels":[],"label_agreement":null},{"id":"W2158776261","doi":"10.1128/iai.69.6.3891-3896.2001","title":"Effect of Purified Lipopolysaccharides from Strains of <i>Helicobacter pylori</i> and <i>Helicobacter felis</i> on Acid Secretion in Mouse Gastric Glands In Vitro","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Histamine; Secretion; Helicobacter pylori; Biology; Microbiology; Helicobacter; Lipopolysaccharide; Lipoteichoic acid; Gastric acid; Carbachol; In vitro; Somatostatin; Bacteria; Biochemistry; Endocrinology; Stimulation","score_opus":0.012257986381409553,"score_gpt":0.2529847434916203,"score_spread":0.24072675711021077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158776261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99867153,0.00023000648,0.000029771933,0.00021180746,0.00015172143,0.00041766572,0.000056249883,0.000039263126,0.00019200772],"genre_scores_gemma":[0.99720377,0.002316025,0.000023882903,0.00023636558,0.00005462196,0.000030329435,0.000091166796,0.000020867456,0.0000229561],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982622,0.00040421216,0.00057898747,0.00029045015,0.00016636396,0.00029777377],"domain_scores_gemma":[0.9991217,0.00019238323,0.00020288871,0.0002944083,0.000091395144,0.00009721487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055946043,0.00027963103,0.00068798574,0.00053458364,0.00005750061,0.0000139376925,0.000055989698,0.00023982539,0.000022482627],"category_scores_gemma":[0.0002480347,0.0002401545,0.00007800376,0.0004270992,0.00020486843,0.00018710401,0.00007717031,0.00066876365,0.0000030323456],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002391681,0.00022075353,0.5550737,0.00006634336,0.00008483765,0.0000071328554,0.00042266233,0.0000017952451,0.4338176,0.0000012953647,0.0000065724857,0.007905631],"study_design_scores_gemma":[0.005296115,0.0020094186,0.7409582,0.0001823421,0.000081300874,0.000033664724,0.00007041878,0.000038394646,0.25112495,0.000009002046,0.00008883889,0.0001073633],"about_ca_topic_score_codex":0.0036338202,"about_ca_topic_score_gemma":0.0005899717,"teacher_disagreement_score":0.1858845,"about_ca_system_score_codex":0.00008038091,"about_ca_system_score_gemma":0.00002206257,"threshold_uncertainty_score":0.97932166},"labels":[],"label_agreement":null},{"id":"W2158815960","doi":"10.1128/iai.71.5.2534-2541.2003","title":"Development of an Interleukin-12-Deficient Mouse Model That Is Permissive for Colonization by a Motile KE26695 Strain of <i>Helicobacter pylori</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Microbiology; Colonization; Helicobacter pylori; Mutant; Knockout mouse; Gene; Genetics","score_opus":0.032196274780256336,"score_gpt":0.27594346345481563,"score_spread":0.2437471886745593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158815960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99015415,0.00003951677,0.008779528,0.000087673296,0.0000930901,0.00045555184,0.000114391485,0.000031384512,0.00024471324],"genre_scores_gemma":[0.9972498,0.00007023171,0.0018841852,0.00036732104,0.0000063895313,0.0000427793,0.000109472225,0.000018224016,0.00025160165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990324,0.0000850477,0.00038383124,0.0001847275,0.00012505849,0.00018892802],"domain_scores_gemma":[0.99916667,0.00003159419,0.00020568787,0.0001981986,0.00031530598,0.00008252691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029594122,0.00016281394,0.0003175578,0.00011737786,0.00014447772,0.000008996711,0.000042218217,0.00012884688,0.000024149633],"category_scores_gemma":[0.000117194395,0.00014995811,0.0000567234,0.00009536715,0.00012454741,0.00012691887,0.000034442175,0.00018256975,9.846542e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010738262,0.0030888862,0.1734173,0.00055684085,0.0010735749,9.709794e-7,0.040420026,0.0001904706,0.768676,0.00012768872,0.0012199943,0.010154454],"study_design_scores_gemma":[0.007941134,0.0028587494,0.0834622,0.0002086726,0.00040492773,0.00005364292,0.0031776344,0.005281186,0.8873861,0.000074133924,0.008781873,0.00036973896],"about_ca_topic_score_codex":0.000054401502,"about_ca_topic_score_gemma":0.000051199044,"teacher_disagreement_score":0.11871014,"about_ca_system_score_codex":0.00008571912,"about_ca_system_score_gemma":0.000090586465,"threshold_uncertainty_score":0.6115114},"labels":[],"label_agreement":null},{"id":"W2159049224","doi":"10.1128/iai.01743-07","title":"Comparison of the Contributions of Heat-Labile Enterotoxin and Heat-Stable Enterotoxin b to the Virulence of Enterotoxigenic<i>Escherichia coli</i>in F4ac Receptor-Positive Young Pigs","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"U.S. Department of Agriculture","keywords":"Enterotoxigenic Escherichia coli; Enterotoxin; Virulence; Biology; Microbiology; Heat-stable enterotoxin; Heat-labile enterotoxin; Fimbria; Escherichia coli; Toxin; Mutant; Diarrhea; Gene; Internal medicine; Biochemistry","score_opus":0.015511884799561742,"score_gpt":0.3003007419375772,"score_spread":0.2847888571380155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159049224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971903,0.0009490678,0.00033358842,0.0001472434,0.00008294865,0.0009990482,0.00011415778,0.0000039322654,0.00017971321],"genre_scores_gemma":[0.9985392,0.0011318526,0.000041404655,0.00006133277,0.00001596076,0.00014332306,0.000011892959,0.000007121427,0.000047873335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871945,0.00044224656,0.00034619783,0.00016454856,0.00014525784,0.00018231201],"domain_scores_gemma":[0.9992632,0.00006219956,0.00009544007,0.00030204887,0.00022988385,0.00004720669],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033909697,0.00012730913,0.000267607,0.00004445551,0.00024094978,0.000008207013,0.00015032888,0.00007719412,0.000009832631],"category_scores_gemma":[0.00027357118,0.00009210125,0.000072667826,0.0002464866,0.00042308637,0.0000117068275,0.0003287266,0.0002133314,5.25278e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015124066,0.00021791845,0.2860071,0.000027750384,0.000045765442,5.809277e-8,0.000905701,0.000037323367,0.7124283,0.000010041999,0.00012648579,0.00004232832],"study_design_scores_gemma":[0.00045674163,0.00047597763,0.37047765,0.000059396163,0.000008042914,0.0000031823267,0.0003221561,0.00007238625,0.627126,0.0000033147587,0.00093733927,0.00005787492],"about_ca_topic_score_codex":0.0028330015,"about_ca_topic_score_gemma":0.00086094905,"teacher_disagreement_score":0.08530233,"about_ca_system_score_codex":0.000029669927,"about_ca_system_score_gemma":0.000057369896,"threshold_uncertainty_score":0.42826697},"labels":[],"label_agreement":null},{"id":"W2159402869","doi":"10.1128/iai.71.2.904-909.2003","title":"Colonial Morphology of <i>Burkholderia cepacia</i> Complex Genomovar III: Implications in Exopolysaccharide Production, Pilus Expression, and Persistence in the Mouse","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Institute for Biological Sciences; University of British Columbia","funders":"University of California, San Francisco; Cystic Fibrosis Canada; Cystic Fibrosis Foundation","keywords":"Biology; Pilus; Burkholderia cepacia complex; Microbiology; Virulence; Phenotype; Strain (injury); Morphology (biology); Persistence (discontinuity); Bacteria; Gene; Genetics; Burkholderia","score_opus":0.04779219216950318,"score_gpt":0.3143002499900715,"score_spread":0.2665080578205683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159402869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980922,0.00021461902,0.00010894012,0.0006922075,0.000040348375,0.00046156373,0.0000055013506,0.00001209366,0.00037256093],"genre_scores_gemma":[0.9988695,0.0004983095,0.00041204656,0.000088646455,0.000013791565,0.0000601278,0.000008638571,0.0000053876006,0.00004358833],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990745,0.00027755243,0.0002336894,0.00016461278,0.00009834273,0.00015125953],"domain_scores_gemma":[0.99941206,0.000109908055,0.0000689456,0.0002632,0.00010202994,0.000043859254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050186063,0.00008253807,0.00018088536,0.00016360311,0.00014695407,0.000012753425,0.00004947393,0.000048980215,0.00004721425],"category_scores_gemma":[0.0006719623,0.00006448562,0.000020889887,0.00037209713,0.00031688,0.000107833024,0.000033662585,0.0002535677,0.0000010586909],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115309325,0.00023837337,0.098945916,0.00004170531,0.0000057846282,0.0000013916745,0.0016079623,0.000010506215,0.89835095,0.00026534722,0.0001619175,0.00025484757],"study_design_scores_gemma":[0.0012782741,0.0002753252,0.9016977,0.00003599802,0.000011775533,0.00033560788,0.0008995241,0.000020212367,0.092025824,0.00038867953,0.002953657,0.000077413046],"about_ca_topic_score_codex":0.0020145571,"about_ca_topic_score_gemma":0.00056067196,"teacher_disagreement_score":0.80632514,"about_ca_system_score_codex":0.000045492212,"about_ca_system_score_gemma":0.000051919527,"threshold_uncertainty_score":0.30454212},"labels":[],"label_agreement":null},{"id":"W2159547452","doi":"10.1128/iai.73.5.3007-3017.2005","title":"Extracellular Carbohydrate-Containing Polymers of a Model Biofilm-Producing Strain, <i>Staphylococcus epidermidis</i> RP62A","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Institut National de la Santé et de la Recherche Médicale; Brigham and Women's Hospital","keywords":"Staphylococcus epidermidis; Biofilm; Microbiology; Bacterial adhesin; Teichoic acid; Polysaccharide; Extracellular; Biology; Staphylococcus aureus; Cell wall; Bacteria; Staphylococcus; Staphylococcal infections; Biochemistry; Virulence","score_opus":0.01581365302595022,"score_gpt":0.24326436950152658,"score_spread":0.22745071647557635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159547452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971027,0.001341103,0.00052862905,0.00011072235,0.00012309605,0.000112909234,0.000023802033,0.000020309233,0.00063675025],"genre_scores_gemma":[0.99867207,0.0002899116,0.000516089,0.0001278402,0.00016181238,0.000003255235,0.00006713742,0.000017473481,0.00014441456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991236,0.00008369149,0.00027308255,0.00024018624,0.000062629326,0.00021685909],"domain_scores_gemma":[0.9994329,0.000009104242,0.0001324254,0.00028334698,0.00007058398,0.000071637915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028347707,0.00015859216,0.00017560601,0.00006451005,0.00016759952,0.000026572472,0.00005343414,0.00015404008,0.00001831396],"category_scores_gemma":[0.000056350775,0.00016001448,0.00008553174,0.000089087,0.000106241205,0.000015911293,0.00007020972,0.00014187438,0.000001420054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000623858,0.000049036353,0.001191137,0.000015058027,0.000033516106,3.9749114e-7,0.00017276844,0.00047197306,0.9801387,0.00006048701,0.000029033452,0.017775493],"study_design_scores_gemma":[0.00050155394,0.00021718377,0.003915673,0.00002833266,0.0000282614,0.0000132459745,0.00013828208,0.0020969242,0.9895648,0.000012936707,0.0032381949,0.00024463385],"about_ca_topic_score_codex":0.0007396389,"about_ca_topic_score_gemma":0.00014253089,"teacher_disagreement_score":0.017530859,"about_ca_system_score_codex":0.000012778191,"about_ca_system_score_gemma":0.000051631458,"threshold_uncertainty_score":0.6525201},"labels":[],"label_agreement":null},{"id":"W2159585370","doi":"10.1128/iai.01199-06","title":"Contribution of Phagocytosis and Intracellular Sensing for Cytokine Production by <i>Staphylococcus aureus</i> -Activated Macrophages","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Biology; TLR2; NOD1; Phagocytosis; Muramyl dipeptide; TLR4; Peptidoglycan; Microbiology; Cytokine; Lipoteichoic acid; NOD2; Tumor necrosis factor alpha; Cell biology; Staphylococcus aureus; Receptor; Bacteria; Innate immune system; Immunology; Immune system; Signal transduction; Biochemistry","score_opus":0.005565924159064068,"score_gpt":0.21738374743403135,"score_spread":0.2118178232749673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159585370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933512,0.0024464158,0.0031792829,0.00019583783,0.00029146395,0.00040037767,0.000023696903,0.000059455,0.000052273594],"genre_scores_gemma":[0.99879295,0.00038072714,0.0000325425,0.000016272867,0.000031613607,0.000011603175,0.00041029177,0.000009522647,0.00031445554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991565,0.00021944434,0.00028573725,0.0001540939,0.000022488139,0.00016173623],"domain_scores_gemma":[0.9993653,0.000093168,0.00019374078,0.00012653838,0.00021214869,0.0000090478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003695327,0.00013007037,0.00020856982,0.000107381864,0.00033996624,0.000018077715,0.000023357137,0.0001786093,0.000014050561],"category_scores_gemma":[0.0001644226,0.00012515704,0.000043387823,0.00012457438,0.00016890689,0.00019427478,0.000024015237,0.00012675155,0.0000025994907],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004461768,0.00008113058,0.0008299832,0.00003646812,0.000060800296,1.2587623e-7,0.00007063222,0.0000056751555,0.98987424,0.00010412006,0.0013159596,0.007174711],"study_design_scores_gemma":[0.0012327478,0.00020270061,0.009046073,0.00002835929,0.000050153318,0.000022966233,0.00004162882,0.000025130774,0.9621568,0.00014828367,0.026926376,0.000118780255],"about_ca_topic_score_codex":0.0009203987,"about_ca_topic_score_gemma":0.000022777029,"teacher_disagreement_score":0.027717415,"about_ca_system_score_codex":0.000032081534,"about_ca_system_score_gemma":0.000014881164,"threshold_uncertainty_score":0.5103756},"labels":[],"label_agreement":null},{"id":"W2159843517","doi":"10.1128/iai.71.8.4657-4663.2003","title":"Binding of <i>Actinobacillus pleuropneumoniae</i> to Phosphatidylethanolamine","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"H2020 European Research Council; Université de Montréal","keywords":"Actinobacillus pleuropneumoniae; Microbiology; Serotype; Biology; Pleuropneumonia; Phosphatidylethanolamine; Phosphatidylserine; Phosphatidic acid; Phosphatidylcholine; Phosphatidylinositol; Phospholipid; Biochemistry","score_opus":0.018962394961518594,"score_gpt":0.2697263617791294,"score_spread":0.2507639668176108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159843517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99178547,0.0004301949,0.00027600973,0.00003425865,0.0003815128,0.00017611375,0.000020576363,0.00004434563,0.006851534],"genre_scores_gemma":[0.99839866,0.0002456212,0.000024052595,0.00006184338,0.0000056552726,0.000010408496,0.00001583703,0.00000888622,0.0012290392],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991531,0.00027138912,0.00019491753,0.00014515858,0.000025133035,0.00021031243],"domain_scores_gemma":[0.9995135,0.00008507583,0.000057389658,0.0001970231,0.00010393572,0.000043067103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003246548,0.00010700398,0.00016752133,0.0001841795,0.00027350706,0.000016197719,0.000046024892,0.00009492098,0.00087344676],"category_scores_gemma":[0.00028909475,0.00010073702,0.00005659877,0.00034412072,0.00010398423,0.000082217965,0.00005432385,0.0002191678,0.00025251426],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034791432,0.0001727705,0.01866471,0.00002408544,0.000048586127,5.342057e-7,0.00012456512,0.0000041105136,0.9757695,0.0011850502,0.0004688524,0.0035024418],"study_design_scores_gemma":[0.0007602413,0.00028568623,0.02358406,0.000027265978,0.000020674377,0.00010099909,0.00009306884,7.3666376e-7,0.8725424,0.000045419463,0.1023872,0.00015228643],"about_ca_topic_score_codex":0.00086835405,"about_ca_topic_score_gemma":0.000039014565,"teacher_disagreement_score":0.10322713,"about_ca_system_score_codex":0.000026382822,"about_ca_system_score_gemma":0.000040936025,"threshold_uncertainty_score":0.95636296},"labels":[],"label_agreement":null},{"id":"W2159877077","doi":"10.1128/iai.01791-14","title":"Origins of a 350-Kilobase Genomic Duplication in Mycobacterium tuberculosis and Its Impact on Virulence","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Gene duplication; Biology; Virulence; Mycobacterium tuberculosis; Genetics; Genome; Lineage (genetic); Tuberculosis; Gene; Virology; Microbiology","score_opus":0.021071183296636,"score_gpt":0.3403595464765966,"score_spread":0.3192883631799606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159877077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985546,0.00013108988,0.000030806194,0.0005271154,0.000036959027,0.00019572103,0.0000073735014,0.000017190865,0.0004991312],"genre_scores_gemma":[0.9976721,0.0019551998,0.000014674073,0.0002782343,0.000033597455,0.000014680691,0.000016280497,0.000006086231,0.00000918455],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99917966,0.00025477455,0.0001990991,0.00014195508,0.000063741405,0.00016077867],"domain_scores_gemma":[0.99939615,0.0001882673,0.00005662321,0.00018150806,0.00006171398,0.00011571989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006131454,0.00009530872,0.00023890588,0.00018535281,0.00005390147,0.0000071830186,0.000025191857,0.00008429373,0.00004853066],"category_scores_gemma":[0.00057252846,0.000073567564,0.000042100088,0.00015204989,0.000059399175,0.00008142899,0.000032808155,0.00024678584,0.000017315617],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043788133,0.00023596127,0.7538836,0.00012716265,0.00003968133,6.601576e-7,0.000114971655,0.000020577458,0.2320466,0.001045593,0.00005337331,0.011993937],"study_design_scores_gemma":[0.000716806,0.0008462763,0.9890516,0.00005892417,0.000015338399,0.000032756623,0.000007886567,0.0024731688,0.0054842927,0.00008332663,0.0011688251,0.00006081273],"about_ca_topic_score_codex":0.0068707843,"about_ca_topic_score_gemma":0.00012888576,"teacher_disagreement_score":0.235168,"about_ca_system_score_codex":0.00018433374,"about_ca_system_score_gemma":0.000028639446,"threshold_uncertainty_score":0.99974257},"labels":[],"label_agreement":null},{"id":"W2159878588","doi":"10.1128/iai.01144-08","title":"Identification of Novel Glycosyltransferases Required for Assembly of the <i>Pasteurella multocida</i> A:1 Lipopolysaccharide and Their Involvement in Virulence","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Australian Research Council","keywords":"Pasteurella multocida; Glycosyltransferase; Heptose; Virulence; Biology; Mutant; Oligosaccharide; Microbiology; Lipopolysaccharide; Lipid A; Biochemistry; Bacteria; Enzyme; Genetics; Gene; Immunology","score_opus":0.027036520861608536,"score_gpt":0.28551274263703585,"score_spread":0.25847622177542734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159878588","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963209,0.00068064476,0.0022257848,0.000101628626,0.00012412686,0.00043227925,0.00006379615,0.000010121601,0.000040733474],"genre_scores_gemma":[0.99930567,0.0005588011,0.0000067169317,0.00005002558,0.000005233614,0.00001833229,0.0000114877785,0.0000036111292,0.00004009962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999301,0.00012735908,0.00030938818,0.0001227147,0.000020646581,0.00011889804],"domain_scores_gemma":[0.99946535,0.00012584377,0.00010562281,0.00018067211,0.000109656976,0.000012843572],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040741454,0.00008692515,0.00015659088,0.00010645565,0.00016819255,0.000011875359,0.00006659565,0.000091236754,0.000009943833],"category_scores_gemma":[0.00011414329,0.00006366152,0.00006297016,0.00014583445,0.00016926027,0.00009777236,0.000031680116,0.00013191935,5.9161863e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011183228,0.00040984587,0.0032083085,0.00005204986,0.000023676328,1.4206462e-8,0.00029706975,0.000012090868,0.98879737,0.0008785618,0.000025184252,0.006183987],"study_design_scores_gemma":[0.0011605914,0.00018121548,0.0624462,0.00006232091,0.000015020948,0.0000063384405,0.00016932568,0.0000761644,0.9353444,0.00020349126,0.0002712357,0.000063724],"about_ca_topic_score_codex":0.0015699633,"about_ca_topic_score_gemma":0.0002743356,"teacher_disagreement_score":0.05923789,"about_ca_system_score_codex":0.000017456352,"about_ca_system_score_gemma":0.00003687819,"threshold_uncertainty_score":0.25960416},"labels":[],"label_agreement":null},{"id":"W2160529598","doi":"10.1128/iai.00107-06","title":"Iha from an <i>Escherichia coli</i> Urinary Tract Infection Outbreak Clonal Group A Strain Is Expressed In Vivo in the Mouse Urinary Tract and Functions as a Catecholate Siderophore Receptor","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Biology; Escherichia coli; Urinary system; In vivo; Microbiology; Strain (injury); Enterobacteriaceae; Outbreak; Siderophore; Virology; Bacteria; Gene; Genetics","score_opus":0.014163892337390564,"score_gpt":0.27181725469053053,"score_spread":0.25765336235313996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160529598","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99786973,0.00048285883,0.000054766868,0.00024255543,0.00006603448,0.00040186246,0.00014325826,0.000029256771,0.0007096806],"genre_scores_gemma":[0.99726516,0.0017193143,0.000052313408,0.00030459667,0.00011661902,0.00015698852,0.0002073197,0.000021104963,0.00015661186],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983537,0.0005986707,0.0002703323,0.00036509844,0.00014531305,0.00026689548],"domain_scores_gemma":[0.9994201,0.00007031946,0.00008491466,0.00030250527,0.00005697143,0.00006520932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004911758,0.00023016433,0.00019008123,0.000113590235,0.00033172348,0.0001019504,0.00009075425,0.00022505781,0.00004438287],"category_scores_gemma":[0.0000898079,0.00020231812,0.00006271403,0.00026593413,0.00015888324,0.00006083928,0.00010808702,0.00058396097,0.0000030142755],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030959412,0.0026543317,0.14230527,0.000023982859,0.000030528558,0.000011381412,0.0006121712,0.000022253014,0.8529713,0.000009202953,0.00035914793,0.0006908178],"study_design_scores_gemma":[0.0013862608,0.002078378,0.9596398,0.000021269056,0.00001918755,0.000068691304,0.000586953,0.0001085214,0.015720526,0.00019171924,0.019902056,0.00027666806],"about_ca_topic_score_codex":0.023407817,"about_ca_topic_score_gemma":0.002885959,"teacher_disagreement_score":0.83725077,"about_ca_system_score_codex":0.00004435795,"about_ca_system_score_gemma":0.00005281487,"threshold_uncertainty_score":0.9830954},"labels":[],"label_agreement":null},{"id":"W2160589870","doi":"10.1128/iai.05340-11","title":"The Iron-Responsive Fur/RyhB Regulatory Cascade Modulates the Shigella Outer Membrane Protease IcsP","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; Canadian Patient Safety Institute","keywords":"Biology; Shigella flexneri; Virulence; Cell biology; Bacterial outer membrane; Microbiology; Plasmid; Cytoplasm; Gene; Genetics; Escherichia coli","score_opus":0.02191253882441252,"score_gpt":0.2626039775549367,"score_spread":0.24069143873052418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160589870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995683,0.0010991306,0.0000364689,0.00027130547,0.00012855895,0.00034312013,0.0000036330368,0.00001623678,0.002418506],"genre_scores_gemma":[0.9962653,0.0016287918,0.000022671473,0.0002102271,0.00008904025,0.00008156873,0.0000049221494,0.000012012389,0.0016854494],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99901146,0.0003957719,0.00012468307,0.00015634099,0.00010362833,0.00020811758],"domain_scores_gemma":[0.99927694,0.00005758008,0.000056737215,0.0004374454,0.00012371434,0.000047573114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005770882,0.0001244597,0.0000825031,0.00002128697,0.0008084895,0.000040749168,0.00014252277,0.00009191969,0.000018753835],"category_scores_gemma":[0.00035934645,0.00007185594,0.000060899914,0.00007638086,0.0003990126,0.00000732523,0.0002652139,0.00025124024,0.000008109646],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008531239,0.00020590973,0.017585576,0.00005457167,0.0003910076,0.0000054374127,0.0021476177,0.000017764149,0.9638,0.00048209378,0.0022820672,0.012174842],"study_design_scores_gemma":[0.00061320583,0.00046987907,0.4794448,0.000014337844,0.00003607596,0.00004208358,0.00059023366,0.00012614566,0.42024827,0.00031284188,0.09783075,0.00027136394],"about_ca_topic_score_codex":0.00067371014,"about_ca_topic_score_gemma":0.00029706562,"teacher_disagreement_score":0.54355174,"about_ca_system_score_codex":0.000013576163,"about_ca_system_score_gemma":0.000051330837,"threshold_uncertainty_score":0.6218329},"labels":[],"label_agreement":null},{"id":"W2161018229","doi":"10.1128/iai.73.10.6372-6382.2005","title":"Live Nonpathogenic Parasitic Vector as a Candidate Vaccine against Visceral Leishmaniasis","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Biology; Leishmania; Immune system; Attenuated vaccine; Immunology; Leishmaniasis; Leishmania donovani; Vaccination; Vector (molecular biology); Virology; Leishmania major; Immunity; Antigen presentation; Antigen; T cell; Visceral leishmaniasis; Microbiology; Parasite hosting; Recombinant DNA","score_opus":0.016967305627433104,"score_gpt":0.3060795178097284,"score_spread":0.2891122121822953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161018229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881861,0.0006610616,0.000021682088,0.001929218,0.00011728618,0.00040051562,0.000007811904,0.0001374477,0.008538875],"genre_scores_gemma":[0.994352,0.0031532405,0.00007484686,0.00084335636,0.00027570484,0.000049866943,0.000027439686,0.00002474425,0.0011988274],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998763,0.00016868878,0.00026514253,0.00024411471,0.00020531584,0.00035372694],"domain_scores_gemma":[0.99908805,0.000092054535,0.00007165667,0.0003329663,0.00020559657,0.00020966085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033649357,0.00020242395,0.0003447786,0.00019645628,0.0004160549,0.00006283958,0.000059430695,0.00009162499,0.00051958027],"category_scores_gemma":[0.0003880267,0.00017618321,0.00011273821,0.00025397833,0.000080786696,0.00023319239,0.000083484294,0.0004811902,0.00048067607],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013588662,0.00182576,0.73424524,0.00034865199,0.0011127064,0.00014565482,0.004289919,0.00002902084,0.08641042,0.00030180023,0.007257982,0.16267397],"study_design_scores_gemma":[0.0023245832,0.00081983116,0.9724841,0.00008870229,0.000099500496,0.000262951,0.00020091425,0.00027518056,0.006143699,0.000033400593,0.017058449,0.00020868106],"about_ca_topic_score_codex":0.0027281442,"about_ca_topic_score_gemma":0.0013698528,"teacher_disagreement_score":0.23823884,"about_ca_system_score_codex":0.00021097239,"about_ca_system_score_gemma":0.00009392055,"threshold_uncertainty_score":0.7184543},"labels":[],"label_agreement":null},{"id":"W2161033195","doi":"10.1128/iai.68.10.5928-5932.2000","title":"Phase Variation in H Type I and Lewis a Epitopes of <i>Helicobacter pylori</i> Lipopolysaccharide","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Federal University of Technology Akure","keywords":"Phase variation; Epitope; Biology; Molecular biology; Gene; Wild type; Antigen; Mutant; Antigenic variation; Genetics; Virulence","score_opus":0.01750330015536666,"score_gpt":0.27994207907191265,"score_spread":0.262438778916546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161033195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998406,0.00022146055,0.000020716367,0.0004225461,0.00012628833,0.00015237411,0.0000041896424,0.000030782565,0.00061563],"genre_scores_gemma":[0.9974806,0.0018557351,0.0000447559,0.00046020004,0.000038014787,0.000007065451,0.000006264851,0.000007571688,0.000099802266],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99935424,0.000091162416,0.00024189848,0.0001248218,0.00005886864,0.00012898818],"domain_scores_gemma":[0.9996243,0.000038601764,0.000053828135,0.00013220096,0.00010198282,0.000049062426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019382709,0.0001010534,0.00022995211,0.00012773227,0.00006298066,0.000008550176,0.000018009678,0.0000893522,0.00013327676],"category_scores_gemma":[0.000110876346,0.00009171182,0.000019444138,0.00019315969,0.00009828829,0.00013829631,0.000024699862,0.00024876115,0.000009632852],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015059423,0.0011986436,0.7774688,0.0000868647,0.00025804562,0.0000073775896,0.0028711958,0.000002901754,0.09417572,0.000044352317,0.0001257321,0.1222544],"study_design_scores_gemma":[0.0043051993,0.0013597691,0.98653144,0.0000698372,0.00008617265,0.00007118488,0.000038976767,0.00008318962,0.0032585198,0.000040483876,0.004081128,0.0000740734],"about_ca_topic_score_codex":0.0021467418,"about_ca_topic_score_gemma":0.00014436124,"teacher_disagreement_score":0.20906264,"about_ca_system_score_codex":0.00002569662,"about_ca_system_score_gemma":0.000018666065,"threshold_uncertainty_score":0.37398994},"labels":[],"label_agreement":null},{"id":"W2161282582","doi":"10.1128/iai.72.5.2803-2809.2004","title":"Impact of Methoxymycolic Acid Production by <i>Mycobacterium bovis</i> BCG Vaccines","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McGill University","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Mycobacterium bovis; Mycolic acid; Virulence; Microbiology; BCG vaccine; Mycobacterium; Bacteria; In vitro; In vivo; Gene; Tuberculosis vaccines; Amino acid; Mycobacterium tuberculosis; Virology; Vaccination; Biochemistry; Genetics; Tuberculosis","score_opus":0.023753803944002526,"score_gpt":0.3568240843622976,"score_spread":0.3330702804182951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161282582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974436,0.00033139403,0.00018546898,0.0011338519,0.00013948718,0.00023010635,0.000010896751,0.000050900693,0.0004742611],"genre_scores_gemma":[0.99749726,0.0019923581,0.00009416762,0.000144817,0.00010157249,0.000014207531,0.0000494051,0.000009619712,0.00009658772],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999141,0.00019621161,0.0002283495,0.00014669591,0.00008487233,0.00020290437],"domain_scores_gemma":[0.9993634,0.00003966477,0.00007949721,0.00023322037,0.00015640183,0.00012776624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004984759,0.00011236249,0.0002873987,0.00013015789,0.00009961788,0.000008336128,0.00002861704,0.00009927151,0.000058552905],"category_scores_gemma":[0.000893971,0.00007528685,0.00011537164,0.00024484866,0.00007342507,0.00015395544,0.000034794408,0.00029101456,0.000010420276],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032088856,0.00033802973,0.27662694,0.00007537117,0.00013804223,7.157878e-7,0.00009980094,0.000009672655,0.7123085,0.00001603249,0.0037964697,0.0062695215],"study_design_scores_gemma":[0.0010000071,0.0012450583,0.9109424,0.000035628942,0.00004110612,0.00021107585,0.000016276736,0.0000073251576,0.08343493,0.00022363511,0.0027644516,0.00007813841],"about_ca_topic_score_codex":0.007107585,"about_ca_topic_score_gemma":0.00005975848,"teacher_disagreement_score":0.63431543,"about_ca_system_score_codex":0.00010345041,"about_ca_system_score_gemma":0.00007839994,"threshold_uncertainty_score":0.99950415},"labels":[],"label_agreement":null},{"id":"W2161319524","doi":"10.1128/iai.72.10.6142-6147.2004","title":"Persistence of <i>Burkholderia multivorans</i> within the Pulmonary Macrophage in the Murine Lung","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Burkholderia cenocepacia; Biology; Microbiology; Clearance; Phagocytosis; Lung; Immunofluorescence; Burkholderia; Macrophage; Bacteria; Immunology; Antibody; Medicine; In vitro","score_opus":0.02118930906772437,"score_gpt":0.2952921138823865,"score_spread":0.27410280481466215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161319524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966089,0.0008191413,0.00016862433,0.00072026864,0.0000616978,0.00034105458,0.000003328988,0.000013441739,0.0012635189],"genre_scores_gemma":[0.9993634,0.00023593531,0.00013423433,0.00015330868,0.000019221248,0.000018977453,0.0000046347877,0.000005077932,0.000065190055],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993149,0.00014667306,0.00016298583,0.000088234774,0.00017496863,0.000112247646],"domain_scores_gemma":[0.99948305,0.00013411611,0.000049709633,0.00024621328,0.000056745303,0.000030149096],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005502801,0.00007336902,0.000117566284,0.000055683788,0.00014704428,0.000015565407,0.00007855881,0.000031108677,0.00002498398],"category_scores_gemma":[0.00027569366,0.00004028414,0.00004138905,0.0002935257,0.00027074848,0.000098185854,0.000040867064,0.000359939,0.0000024450399],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009685238,0.0012545639,0.117765136,0.0006737173,0.00007106866,0.00007310021,0.008357333,0.0007223605,0.86124223,0.0005585975,0.000062976214,0.008250367],"study_design_scores_gemma":[0.0016015584,0.0003610036,0.96397346,0.00023207678,0.000027857588,0.00034986483,0.002114433,0.00069873437,0.029507995,0.00028068552,0.0007750269,0.000077307],"about_ca_topic_score_codex":0.0034371112,"about_ca_topic_score_gemma":0.0002526935,"teacher_disagreement_score":0.84620833,"about_ca_system_score_codex":0.000040791714,"about_ca_system_score_gemma":0.000043249256,"threshold_uncertainty_score":0.5195907},"labels":[],"label_agreement":null},{"id":"W2161323699","doi":"10.1128/iai.00485-09","title":"Antiapoptotic Proteins Bcl-2 and Bcl-X <sub>L</sub> Inhibit <i>Clostridium difficile</i> Toxin A-Induced Cell Death in Human Epithelial Cells","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Clostridium difficile toxin A; Apoptosis; Programmed cell death; Biology; Caspase 8; Cell; Cell culture; Cell biology; Caspase; Cancer research; Molecular biology; Microbiology; Clostridium difficile; Biochemistry","score_opus":0.021675413695485084,"score_gpt":0.2750950385410061,"score_spread":0.253419624845521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161323699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99536645,0.00024319737,0.000025160169,0.00045206715,0.00013735768,0.0011524439,0.00002093231,0.00012761739,0.0024747455],"genre_scores_gemma":[0.9978163,0.001480463,0.00002342794,0.00021815869,0.00020226827,0.000029763087,0.00004304313,0.000036303092,0.00015022777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976196,0.00024689693,0.00057841715,0.00051539997,0.00040537523,0.00063427933],"domain_scores_gemma":[0.9988179,0.00008675437,0.00013465692,0.00047246282,0.00015126831,0.0003369272],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00054888235,0.00040199305,0.00056844385,0.00047464314,0.00043256016,0.00012160808,0.000096059135,0.00032709827,0.00004762082],"category_scores_gemma":[0.000114595656,0.0003837637,0.00012984192,0.0005928742,0.00012332607,0.00019192211,0.00013052662,0.0011997536,0.000036520767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023089354,0.0013133672,0.002762596,0.000144352,0.000019437444,0.000042669013,0.00021666042,0.0000042482066,0.98571247,0.000046493897,0.00011263999,0.009394164],"study_design_scores_gemma":[0.0037876442,0.001922206,0.060513467,0.00016420709,0.00005988486,0.00008540366,0.00008655442,0.000118430275,0.9324215,0.00007266765,0.0004178773,0.0003501413],"about_ca_topic_score_codex":0.0012575384,"about_ca_topic_score_gemma":0.00014552081,"teacher_disagreement_score":0.057750873,"about_ca_system_score_codex":0.00020925897,"about_ca_system_score_gemma":0.0001530278,"threshold_uncertainty_score":0.9998614},"labels":[],"label_agreement":null},{"id":"W2161327297","doi":"10.1128/iai.00698-10","title":"<i>In Vitro</i>Characterization of the Microglial Inflammatory Response to<i>Streptococcus suis</i>, an Important Emerging Zoonotic Agent of Meningitis","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Streptococcus suis; Biology; Microbiology; Microglia; Proinflammatory cytokine; Inflammation; Immunology; Virulence; Biochemistry","score_opus":0.009376895464479675,"score_gpt":0.27163381468431896,"score_spread":0.2622569192198393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161327297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99874914,0.00000486793,0.000022156344,0.00010620815,0.00043742533,0.0005608348,0.00002194187,0.000017918697,0.00007949525],"genre_scores_gemma":[0.99969643,0.000014094274,0.00004364099,0.000048169524,0.000029945139,0.00004047784,0.000015911144,0.000009807808,0.00010152638],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99913573,0.00014071637,0.00038248024,0.00012738578,0.000095856725,0.00011782094],"domain_scores_gemma":[0.9992961,0.000042224867,0.00017695082,0.00031420586,0.000105766296,0.000064722546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034080338,0.000108896835,0.0001953388,0.00017735164,0.00010252065,0.000010658096,0.00003781991,0.00007806233,0.00011901431],"category_scores_gemma":[0.00014480452,0.00008520063,0.00007484997,0.0002606145,0.00008225586,0.00012866818,0.000046667577,0.00023128148,0.0000028134705],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030449298,0.0001906493,0.3971355,0.000015498463,0.000018198161,0.000001935674,0.0002537826,8.794251e-7,0.6009501,0.000010602575,0.0000015986986,0.001116746],"study_design_scores_gemma":[0.00058525935,0.00015826551,0.5510977,0.000026381906,0.000022337985,0.000020721713,0.000020947251,0.000024211271,0.4475892,0.000011675357,0.00040336532,0.00003993777],"about_ca_topic_score_codex":0.0008714667,"about_ca_topic_score_gemma":0.00015806215,"teacher_disagreement_score":0.1539622,"about_ca_system_score_codex":0.000036968442,"about_ca_system_score_gemma":0.000057037043,"threshold_uncertainty_score":0.34743807},"labels":[],"label_agreement":null},{"id":"W2161406944","doi":"10.1128/iai.01710-07","title":"Application of Capillary Electrophoresis Mass Spectrometry and Liquid Chromatography Multiple-Step Tandem Electrospray Mass Spectrometry To Profile Glycoform Expression during <i>Haemophilus influenzae</i> Pathogenesis in the Chinchilla Model of Experimental Otitis Media","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute on Deafness and Other Communication Disorders; National Institutes of Health; Medical Research Council; Vetenskapsrådet","keywords":"Haemophilus influenzae; Microbiology; Mass spectrometry; Chromatography; Electrospray; Biology; Haemophilus; Pasteurellaceae; Glycan; Tandem mass spectrometry; Glycosylation; Otitis; Bacteria; Chemistry; Molecular biology; Biochemistry; Glycoprotein; Antibiotics","score_opus":0.00936004119507799,"score_gpt":0.22501183489179416,"score_spread":0.21565179369671617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161406944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956642,0.0020060285,0.0014597516,0.000022014323,0.00011409833,0.0005293389,0.00004389349,0.000045377103,0.00011530441],"genre_scores_gemma":[0.99700403,0.0021823808,0.0005717172,0.000026864009,0.000035243538,0.00009743118,0.00005600364,0.000020462634,0.000005876358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986384,0.00023508002,0.00047575796,0.0002854814,0.000060045997,0.00030526033],"domain_scores_gemma":[0.99921465,0.00011554475,0.00022720646,0.0003311974,0.000073925985,0.000037463687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002604374,0.00024649483,0.00041017524,0.0005271759,0.0004134807,0.0000128999245,0.00013051362,0.00023503118,0.00003737528],"category_scores_gemma":[0.00006211812,0.00020143943,0.00010288466,0.00074530067,0.00016456816,0.0001713472,0.000079366444,0.00031516896,0.0000026905984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042282834,0.00023251952,0.08413066,0.000033682438,0.000048260546,5.547689e-7,0.0006292144,0.000014840404,0.91432625,0.00005322916,0.000017246115,0.00009074223],"study_design_scores_gemma":[0.0009613796,0.0005308479,0.29499164,0.00002470375,0.000017428267,0.00012672771,0.00013279282,0.00004302844,0.7029525,0.000027775632,0.00004277063,0.00014838846],"about_ca_topic_score_codex":0.0009917654,"about_ca_topic_score_gemma":0.00009082943,"teacher_disagreement_score":0.2113737,"about_ca_system_score_codex":0.00005896854,"about_ca_system_score_gemma":0.000031745283,"threshold_uncertainty_score":0.8214461},"labels":[],"label_agreement":null},{"id":"W2161725470","doi":"10.1128/iai.01425-08","title":"<i>Campylobacter jejuni</i> Glycosylation Island Important in Cell Charge, Legionaminic Acid Biosynthesis, and Colonization of Chickens","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Institute for Marine Biosciences","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Campylobacter jejuni; Flagellin; Biology; Complementation; Flagellum; Microbiology; Mutant; Glycosylation; Gene; Pathogen; Glycan; Locus (genetics); Strain (injury); Genetics; Bacteria; Glycoprotein","score_opus":0.012368443762908242,"score_gpt":0.21730495783245865,"score_spread":0.2049365140695504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161725470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983869,0.00039027212,0.000006695123,0.00039796674,0.00006547139,0.00012334075,0.000012808242,0.000021325886,0.0005952262],"genre_scores_gemma":[0.9974289,0.002209242,0.00000919871,0.00022518824,0.000036597918,0.0000025298614,0.00006426408,6.268643e-7,0.000023455928],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99920195,0.00017356589,0.0002844065,0.00015252289,0.00005215522,0.0001353855],"domain_scores_gemma":[0.99961007,0.00011002854,0.00015173701,0.000046827074,0.000039706643,0.00004161182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003346126,0.00010252442,0.00018628463,0.000030901872,0.00010178919,0.000016585009,0.000040438692,0.00012733124,0.00010925358],"category_scores_gemma":[0.000066379,0.00005021315,0.00003143356,0.00022414225,0.0000629341,0.00012677458,0.000020889145,0.000114275754,0.0000028680167],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005216815,0.00017461328,0.65781575,0.0000074587033,0.0000038980907,5.13495e-7,0.00011236018,5.4753093e-7,0.32863146,0.0001410924,0.000051255953,0.01300889],"study_design_scores_gemma":[0.0001988627,0.0003616499,0.98391175,0.000014589596,0.0000075288385,0.0000110686005,0.000028908367,0.00008456709,0.013017283,0.00071953435,0.0015475621,0.00009666467],"about_ca_topic_score_codex":0.000710018,"about_ca_topic_score_gemma":0.0010861157,"teacher_disagreement_score":0.32609606,"about_ca_system_score_codex":0.000012612634,"about_ca_system_score_gemma":0.000004902296,"threshold_uncertainty_score":0.2047633},"labels":[],"label_agreement":null},{"id":"W2161848999","doi":"10.1128/iai.70.11.6032-6042.2002","title":"Acquisition of Mn(II) in Addition to Fe(II) Is Required for Full Virulence of <i>Salmonella enterica</i> Serovar Typhimurium","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Trace Elements in Health","field":"Nursing","cited_by":244,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"Canadian Institutes of Health Research; U.S. Public Health Service","keywords":"Virulence; Mutant; Salmonella enterica; Biology; Transporter; Microbiology; Divalent; Ferrous; Salmonella; Enterobacteriaceae; Intracellular; Molecular biology; ATP-binding cassette transporter; Gene; Biochemistry; Escherichia coli; Chemistry; Genetics; Bacteria","score_opus":0.03258845856804094,"score_gpt":0.29881826838336156,"score_spread":0.26622980981532063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161848999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973229,0.00008298162,0.00047351912,0.0006413568,0.0005200666,0.0004874265,0.0001413412,0.000035752368,0.00029464308],"genre_scores_gemma":[0.9986538,0.000106363506,0.0006091735,0.00044698437,0.00004681628,0.000037889055,0.000033774733,0.000013152251,0.000052012507],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989882,0.00012687278,0.00041545328,0.00016327537,0.0001239761,0.00018221754],"domain_scores_gemma":[0.9993068,0.000083559265,0.0002027236,0.00023050324,0.00012726062,0.000049175116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003293085,0.00010872603,0.00019957196,0.00018888453,0.0002014911,0.000008209765,0.000064720385,0.000090722344,0.00022649877],"category_scores_gemma":[0.00008453305,0.00012349484,0.00004826414,0.00031756918,0.000053176027,0.00023251424,0.000055498615,0.00012983165,0.0000056997415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022161033,0.002629677,0.019801619,0.0009832445,0.000048870937,5.3067305e-7,0.011647219,0.00012464977,0.8609941,0.0001523316,0.017028244,0.08437341],"study_design_scores_gemma":[0.004916584,0.011087498,0.2555007,0.0009843485,0.00008478977,0.000027672997,0.0005864301,0.0038031812,0.68965584,0.0012333257,0.03152839,0.0005911985],"about_ca_topic_score_codex":0.0007829786,"about_ca_topic_score_gemma":0.00011018958,"teacher_disagreement_score":0.2356991,"about_ca_system_score_codex":0.00010185848,"about_ca_system_score_gemma":0.000006470134,"threshold_uncertainty_score":0.5035973},"labels":[],"label_agreement":null},{"id":"W2162202488","doi":"10.1128/iai.69.1.159-169.2001","title":"Description of Staphylococcus Serine Protease ( <i>ssp</i> ) Operon in <i>Staphylococcus aureus</i> and Nonpolar Inactivation of <i>sspA</i> -Encoded Serine Protease","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's College Hospital; University of Toronto; Mount Sinai Hospital; Sunnybrook Health Science Centre","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council","keywords":"Operon; Staphylococcus aureus; Protease; Biology; Serine protease; Cysteine protease; Microbiology; Cysteine; Virulence; Serine; Biochemistry; Escherichia coli; Gene; Molecular biology; Bacteria; Enzyme; Genetics","score_opus":0.01923484891249074,"score_gpt":0.26177034971586366,"score_spread":0.2425355008033729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162202488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948426,0.00046589368,0.0010913975,0.00023908769,0.000096265685,0.0021915692,0.000044467004,0.00007080137,0.0009579489],"genre_scores_gemma":[0.99769014,0.0012651401,0.00049215415,0.00016824316,0.000052837364,0.000089533394,0.000049688322,0.000038661598,0.00015361422],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979043,0.00022897495,0.00085409556,0.00039183017,0.00027397243,0.00034683582],"domain_scores_gemma":[0.9983752,0.0000626716,0.00047595965,0.0005032049,0.0004006619,0.0001823068],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00066676905,0.00034558694,0.00069883914,0.0004576606,0.000144097,0.000030661187,0.00009066465,0.0002295694,0.000049808044],"category_scores_gemma":[0.0003500034,0.00034030635,0.00010643193,0.0008880914,0.0003639306,0.00058265525,0.00012604472,0.0005796762,0.0000023715986],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016703411,0.0007118275,0.28387427,0.00073228165,0.000039997703,0.000012616653,0.00036751648,0.000026517995,0.7101894,0.00005640894,0.00007581276,0.0022429868],"study_design_scores_gemma":[0.0049949037,0.0012719674,0.5296861,0.00081275904,0.0000835191,0.000047331807,0.00038263126,0.00025635603,0.45853287,0.00022838361,0.0033226777,0.00038051401],"about_ca_topic_score_codex":0.0068284934,"about_ca_topic_score_gemma":0.0006484772,"teacher_disagreement_score":0.25165656,"about_ca_system_score_codex":0.00015681445,"about_ca_system_score_gemma":0.00015237211,"threshold_uncertainty_score":0.9999049},"labels":[],"label_agreement":null},{"id":"W2162257455","doi":"10.1128/iai.68.8.4399-4406.2000","title":"Central Role of Endogenous Gamma Interferon in Protective Immunity against Blood-Stage<i>Plasmodium chabaudi</i>AS Infection","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":255,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Plasmodium chabaudi; Biology; Immunity; Immunology; Interferon gamma; Endogeny; Plasmodium (life cycle); Malaria; Virology; Plasmodium falciparum; Parasitemia; Immune system; Parasite hosting","score_opus":0.01416805113775887,"score_gpt":0.2516956703548389,"score_spread":0.23752761921708004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162257455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98398966,0.0005572449,0.000019312785,0.000023259388,0.00035382877,0.00046094964,0.000034324607,0.000085285305,0.014476149],"genre_scores_gemma":[0.9974318,0.0014808651,0.0000045599922,0.000049968294,0.000022052507,0.00005973116,0.00009897857,0.00001584258,0.00083616585],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984628,0.0004932696,0.00041676065,0.00022735757,0.00003608009,0.00036374803],"domain_scores_gemma":[0.9993291,0.00009401229,0.00016923237,0.00028048723,0.00009120245,0.000035975965],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023857717,0.0002266024,0.00032793437,0.00021654305,0.00036811057,0.000025212586,0.00009138733,0.0002689292,0.0014136216],"category_scores_gemma":[0.00007711947,0.00023023433,0.00011943398,0.00027240315,0.0002015261,0.00029530242,0.000064635664,0.00090252387,0.0001363274],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009971556,0.0013761495,0.10059538,0.00003907649,0.0002536847,0.0000039618144,0.0029060105,0.00020280168,0.8625987,0.00016039879,0.000015310003,0.030851386],"study_design_scores_gemma":[0.0022710504,0.0018130504,0.50480396,0.000118819116,0.00006772345,0.00039649176,0.0004105866,0.000045140052,0.47089612,0.00018183033,0.018661857,0.00033333522],"about_ca_topic_score_codex":0.031471748,"about_ca_topic_score_gemma":0.002444891,"teacher_disagreement_score":0.4042086,"about_ca_system_score_codex":0.000095888434,"about_ca_system_score_gemma":0.000057496305,"threshold_uncertainty_score":0.9994992},"labels":[],"label_agreement":null},{"id":"W2162606414","doi":"10.1128/iai.01235-10","title":"Protective Role of Akt2 in Salmonella enterica Serovar Typhimurium-Induced Gastroenterocolitis","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Genome Prairie; Canadian Institutes of Health Research; Genome British Columbia","keywords":"Salmonella enterica; Biology; Proinflammatory cytokine; Microbiology; AKT2; Tumor necrosis factor alpha; Salmonella; Inflammation; Apoptosis; Immunology; PI3K/AKT/mTOR pathway; AKT1; Bacteria; Biochemistry","score_opus":0.04313987096922323,"score_gpt":0.29217071622722973,"score_spread":0.2490308452580065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162606414","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964949,0.000034733937,0.00016462152,0.00006252114,0.000043409596,0.00042403812,0.000004479913,0.000022684004,0.0027486156],"genre_scores_gemma":[0.9995117,0.00011073035,0.0001726934,0.00008107087,0.00002085548,0.0000579149,0.000006226115,0.000008433983,0.00003033157],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990215,0.0002675061,0.00025404038,0.00013553622,0.00007148602,0.0002499639],"domain_scores_gemma":[0.9995726,0.000008061071,0.00007295188,0.00015765712,0.00008290258,0.00010587872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026158465,0.000095968324,0.00027786984,0.00017281459,0.000040469065,0.0000036340625,0.00003953496,0.000066611865,0.00013815107],"category_scores_gemma":[0.00017854683,0.00008785795,0.000057374036,0.00012572881,0.00009410567,0.000083418934,0.00007018724,0.0003269749,0.000009254717],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016297745,0.0005352142,0.8140463,0.00008548557,0.00005230736,0.000012704726,0.0006714979,2.5450052e-7,0.17175077,0.00003844191,0.000037640984,0.0111396],"study_design_scores_gemma":[0.001260894,0.0022121072,0.98579645,0.00010096994,0.000007691884,0.00013198568,0.00022365655,0.000059038655,0.009640944,0.00034739272,0.00017561925,0.00004323745],"about_ca_topic_score_codex":0.009559293,"about_ca_topic_score_gemma":0.0003999494,"teacher_disagreement_score":0.17175016,"about_ca_system_score_codex":0.000050891707,"about_ca_system_score_gemma":0.000021489324,"threshold_uncertainty_score":0.99703616},"labels":[],"label_agreement":null},{"id":"W2162641825","doi":"10.1128/iai.01349-08","title":"Extracts of the Rat Tapeworm,<i>Hymenolepis diminuta</i>, Suppress Macrophage Activation<i>In Vitro</i>and Alleviate Chemically Induced Colitis in Mice","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Institute of Infection and Immunity","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; University of Calgary","keywords":"Hymenolepis diminuta; Biology; Tumor necrosis factor alpha; Lipopolysaccharide; Macrophage; Colitis; In vitro; Immunology; Interleukin; Cytokine; Molecular biology; Pharmacology; Microbiology; Biochemistry","score_opus":0.01234381322132532,"score_gpt":0.2620549831162787,"score_spread":0.24971116989495334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162641825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99756634,0.00033086207,0.000010284357,0.00031132175,0.00021307163,0.00020295194,0.000008494923,0.00001522152,0.0013414399],"genre_scores_gemma":[0.9991515,0.00025438436,0.00000862771,0.0002638331,0.000008060021,0.000011934888,0.000023416022,0.000005119138,0.00027307545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915296,0.0002170015,0.000274218,0.00014736009,0.000025782088,0.0001826536],"domain_scores_gemma":[0.9994987,0.0001536154,0.000114567236,0.00017224006,0.000043901964,0.000016970607],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017037512,0.0001221891,0.00021073851,0.000107722706,0.00014367125,0.000017490056,0.00008347625,0.00018386228,0.000095556556],"category_scores_gemma":[0.00011395893,0.00010240826,0.000051082,0.00018709866,0.00009323819,0.0001894912,0.000055400298,0.0005547103,0.0000068867785],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026337113,0.00023223534,0.0040138313,0.000010135053,0.000023760298,5.089271e-7,0.00057452475,0.000003785933,0.988576,0.00006875708,0.00005927031,0.006173801],"study_design_scores_gemma":[0.00072434125,0.00007115731,0.44527033,0.000044393026,0.000009385819,0.000022678312,0.000051297957,0.000006161525,0.551093,0.00009820121,0.0025359215,0.000073170646],"about_ca_topic_score_codex":0.0025163179,"about_ca_topic_score_gemma":0.00033416817,"teacher_disagreement_score":0.4412565,"about_ca_system_score_codex":0.000044084114,"about_ca_system_score_gemma":0.00002266031,"threshold_uncertainty_score":0.41760877},"labels":[],"label_agreement":null},{"id":"W2162834726","doi":"10.1128/iai.70.1.177-184.2002","title":"Central Role for Interleukin-4 in Regulating Nitric Oxide-Mediated Inhibition of T-Cell Proliferation and Gamma Interferon Production in Schistosomiasis","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Biology; Interferon gamma; Antigen; Immunology; Interleukin 2; Splenocyte; CD8; Nitric oxide; Interferon; T cell; Immune system; Endocrinology","score_opus":0.015009882971109622,"score_gpt":0.24229888232528338,"score_spread":0.22728899935417377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162834726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99847084,0.00050306245,0.000121137375,0.00007033283,0.00017530013,0.00036468022,0.0000077694085,0.00002258726,0.00026426843],"genre_scores_gemma":[0.9993453,0.0002576844,0.000039573188,0.00001857619,0.0000124612625,0.000046062305,0.00007354243,0.0000069032653,0.00019987952],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920154,0.00015330728,0.00032198709,0.00015598797,0.000015926023,0.00015128084],"domain_scores_gemma":[0.9996325,0.00007747286,0.000134931,0.000085847096,0.000057059326,0.000012229547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001833758,0.00009808567,0.00016079964,0.0003607052,0.00010840922,0.0000134863985,0.000019592884,0.00013141846,0.00004519922],"category_scores_gemma":[0.00017871731,0.000101916274,0.000029819064,0.00019527166,0.000065946675,0.0002660092,0.00002228524,0.00026154105,0.0000048168235],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003107544,0.0003538164,0.14097154,0.00005061429,0.0000133729945,1.4202375e-7,0.0014353603,0.00003384635,0.8477781,0.000030763018,0.000074706026,0.008947015],"study_design_scores_gemma":[0.0025653073,0.0004989038,0.6164954,0.00019125266,0.000022094353,0.000055242508,0.00067313726,0.0013440023,0.3768506,0.00014982521,0.0009702151,0.00018404197],"about_ca_topic_score_codex":0.0011058992,"about_ca_topic_score_gemma":0.00084921415,"teacher_disagreement_score":0.47552383,"about_ca_system_score_codex":0.00008339778,"about_ca_system_score_gemma":0.000008202942,"threshold_uncertainty_score":0.4156025},"labels":[],"label_agreement":null},{"id":"W2162859172","doi":"10.1128/iai.00993-06","title":"Identification of Potential Virulence Determinants by <i>Himar1</i> Transposition of Infectious <i>Borrelia burgdorferi</i> B31","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; McGill University","keywords":"Borrelia burgdorferi; Biology; Virulence; Borrelia; Transposition (logic); Microbiology; Virology; Identification (biology); Lyme disease; Genetics; Ecology; Gene; Antibody","score_opus":0.003758898187639083,"score_gpt":0.21504410367945118,"score_spread":0.2112852054918121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162859172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951227,0.0011829545,0.002214021,0.000014558503,0.00066236476,0.00023098601,0.0001900691,0.00009898303,0.00028339832],"genre_scores_gemma":[0.9991515,0.00046506256,0.000003021391,0.000031240495,0.000019705727,0.000023151915,0.00016392571,0.000015581469,0.00012676856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986337,0.00028523846,0.00060863886,0.00021852975,0.00005729218,0.00019663257],"domain_scores_gemma":[0.999028,0.000067511784,0.00041025173,0.000267096,0.00020700747,0.000020088724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024074492,0.00018413915,0.00029786976,0.00016459257,0.00023982688,0.0000166819,0.00008750079,0.0002256414,0.00010351131],"category_scores_gemma":[0.000046362104,0.00019442182,0.00012678414,0.00024995522,0.00036417882,0.0002685425,0.000031473723,0.00021525128,0.000025274365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011180544,0.00057804043,0.11159019,0.000075269905,0.00005191769,5.2158026e-7,0.00005760794,0.000040480718,0.8839689,0.000073824864,0.0004663888,0.0029850667],"study_design_scores_gemma":[0.00091787626,0.00026007148,0.3937526,0.000032650307,0.00010915117,0.00006773376,0.000015455333,0.000020441308,0.6039495,0.0002322015,0.00049688545,0.00014543465],"about_ca_topic_score_codex":0.007281317,"about_ca_topic_score_gemma":0.0001946535,"teacher_disagreement_score":0.28216243,"about_ca_system_score_codex":0.000039033996,"about_ca_system_score_gemma":0.000036268673,"threshold_uncertainty_score":0.99932927},"labels":[],"label_agreement":null},{"id":"W2162918165","doi":"10.1128/iai.74.2.1171-1180.2006","title":"Mn <sup>2+</sup> -Dependent Regulation of Multiple Genes in <i>Streptococcus pneumoniae</i> through PsaR and the Resultant Impact on Virulence","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Virulence; Biology; Microbiology; Streptococcus pneumoniae; Mutant; Response regulator; Wild type; Gene; Genetics; Antibiotics","score_opus":0.013998609249130248,"score_gpt":0.2740989652498409,"score_spread":0.26010035600071063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162918165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970104,0.00022097875,0.000044838347,0.00034659953,0.00006963402,0.000491037,0.000022916483,0.000039492985,0.0017540856],"genre_scores_gemma":[0.99918425,0.0005076877,0.000005160973,0.00010723085,0.000047517326,0.000032340453,0.000013867396,0.000010157664,0.000091767106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892825,0.00024323084,0.00036154478,0.00016855131,0.00014961045,0.00014883275],"domain_scores_gemma":[0.99923974,0.0002302074,0.00013615566,0.0002753447,0.00008075686,0.00003779126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040531225,0.00015209822,0.000262308,0.00011455031,0.00022836507,0.000022781664,0.000034097633,0.00010711554,0.000018430592],"category_scores_gemma":[0.00013445196,0.00009516701,0.00008440677,0.0002593876,0.00026841293,0.00014569816,0.000035112385,0.00029963034,0.000003887992],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044916593,0.00053268456,0.81806874,0.00007323159,0.000058405723,0.000004202794,0.0008592392,0.0057418696,0.16788933,0.00066307175,0.00006578677,0.0055942987],"study_design_scores_gemma":[0.003953234,0.0004232789,0.97419655,0.000108951,0.000045556135,0.00008065735,0.00014707689,0.0031118903,0.015389694,0.000704021,0.0017254114,0.00011369127],"about_ca_topic_score_codex":0.0045178887,"about_ca_topic_score_gemma":0.00024090658,"teacher_disagreement_score":0.15612783,"about_ca_system_score_codex":0.000064179265,"about_ca_system_score_gemma":0.000040722585,"threshold_uncertainty_score":0.68297267},"labels":[],"label_agreement":null},{"id":"W2162943854","doi":"10.1128/iai.71.9.5178-5187.2003","title":"Vaccination with Novel Immunostimulatory Adjuvants against Blood-Stage Malaria in Mice","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Plasmodium chabaudi; Adjuvant; Antigen; Parasitemia; Immune system; Malaria vaccine; Biology; Immunology; Alum; Antibody; Vaccination; Immunization; Malaria; Virology; Immunity; Plasmodium falciparum; Chemistry","score_opus":0.015127241970307865,"score_gpt":0.27051443065641145,"score_spread":0.2553871886861036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162943854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98668194,0.00025001826,0.00064920646,0.00016777984,0.00006775165,0.00040803442,0.0000036984777,0.000036281166,0.011735293],"genre_scores_gemma":[0.99864554,0.00023107967,0.00008509106,0.00020068277,0.000016827746,0.0000215761,0.000017200504,0.000011405376,0.0007705695],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923295,0.0001278471,0.00016169243,0.00013798554,0.00014245792,0.0001970873],"domain_scores_gemma":[0.99949944,0.000062977204,0.00004889243,0.00017909166,0.00012006796,0.00008952496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044841223,0.00010875398,0.00017028698,0.00018628528,0.000116265895,0.00002822565,0.00002849058,0.0000852421,0.00023306417],"category_scores_gemma":[0.00032673238,0.00009154195,0.000028010421,0.00024000372,0.000027668757,0.00016449769,0.000016974736,0.00041347631,0.000008152737],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001878004,0.0027485914,0.632925,0.00030431955,0.00032772208,0.00007295226,0.0005414918,0.00021142194,0.33471566,0.010643626,0.000056265235,0.015574981],"study_design_scores_gemma":[0.008358898,0.00041552863,0.98245215,0.000061455634,0.00003310521,0.000048669724,0.00007541543,0.00078388077,0.005587868,0.000019092697,0.002054435,0.00010948716],"about_ca_topic_score_codex":0.0007897437,"about_ca_topic_score_gemma":0.00024678293,"teacher_disagreement_score":0.3495272,"about_ca_system_score_codex":0.000051657353,"about_ca_system_score_gemma":0.00010979147,"threshold_uncertainty_score":0.37329724},"labels":[],"label_agreement":null},{"id":"W2162997766","doi":"10.1128/iai.01567-08","title":"NIH Peer Review Reform—Change We Need, or Lipstick on a Pig?","year":2009,"lang":"en","type":"editorial","venue":"Infection and Immunity","topic":"Health and Medical Research Impacts","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipstick; Biology","score_opus":0.23352509396753526,"score_gpt":0.4844334111402881,"score_spread":0.25090831717275286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162997766","genre_codex":"editorial","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008442211,0.027243696,0.000021750224,0.15053362,0.77393633,0.0042367643,0.00020850688,0.00038216868,0.04259292],"genre_scores_gemma":[0.00021001311,0.5024085,0.000016709475,0.019578844,0.45568448,0.000105180035,0.00080208154,0.00003956254,0.021154596],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99641657,0.00033680216,0.00045159264,0.0002631011,0.00180518,0.0007267538],"domain_scores_gemma":[0.99460125,0.00068198034,0.00016753873,0.0005647924,0.001069382,0.002915047],"candidate_categories":["metaresearch","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0034917276,0.00030870512,0.0007726246,0.00026546486,0.0002332877,0.000038738654,0.00009060751,0.00083912007,0.00069910445],"category_scores_gemma":[0.13279885,0.00019578652,0.0001276424,0.0003730342,0.00009913741,0.00012180006,0.00006166411,0.0035872455,0.00030737306],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004886249,0.00021027873,0.0000074793024,0.0050881044,0.000024932071,0.000029603803,0.000067640074,2.2240971e-9,0.0000029197704,0.0000035998335,0.8314365,0.16264033],"study_design_scores_gemma":[0.0014790775,0.0043798694,0.0006816576,0.015430625,0.00011884473,0.00004236346,0.000018701772,0.000002722665,0.0000054548914,0.000017503235,0.97764826,0.00017490401],"about_ca_topic_score_codex":0.004670595,"about_ca_topic_score_gemma":0.00016962766,"teacher_disagreement_score":0.47516483,"about_ca_system_score_codex":0.00074161397,"about_ca_system_score_gemma":0.003268545,"threshold_uncertainty_score":0.9987115},"labels":[],"label_agreement":null},{"id":"W2163136327","doi":"10.1128/iai.01304-10","title":"Lcl of Legionella pneumophila Is an Immunogenic GAG Binding Adhesin That Promotes Interactions with Lung Epithelial Cells and Plays a Crucial Role in Biofilm Formation","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Legionella pneumophila; Microbiology; Bacterial adhesin; Legionella; Biofilm; Biology; Bacteria; Virulence; Biochemistry","score_opus":0.028695780799551263,"score_gpt":0.2642555876916201,"score_spread":0.23555980689206885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163136327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989205,0.00011539728,0.00016039764,0.000020367308,0.00005518121,0.0001941826,0.000018286795,0.0000079497995,0.0005077328],"genre_scores_gemma":[0.99919546,0.00057959976,0.000063482956,0.000017234732,0.00003383999,0.000013288527,0.000037688296,0.000010679961,0.000048758313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934846,0.00011283533,0.00016048724,0.00015747211,0.00007264467,0.00014807127],"domain_scores_gemma":[0.9996231,0.000010581015,0.00009230015,0.00016496603,0.00005921573,0.00004979955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019627603,0.00011169961,0.00011672014,0.0001472919,0.00016365932,0.000030359193,0.00005986661,0.00009551965,0.000012205854],"category_scores_gemma":[0.000011872853,0.000097298995,0.000032552172,0.000116003335,0.00011050372,0.00005554402,0.00007160639,0.00017009753,0.0000016918378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025949217,0.00014102236,0.025809806,0.000033512057,0.000025243484,8.335738e-7,0.001632941,0.0000013674752,0.9708329,0.000014480787,0.000011543981,0.0012368783],"study_design_scores_gemma":[0.00061460934,0.00049896404,0.04747551,0.000038358925,0.0000139601625,0.00005923449,0.000596644,0.00035886484,0.94992965,0.00004066775,0.00024836062,0.00012515804],"about_ca_topic_score_codex":0.0021722885,"about_ca_topic_score_gemma":0.0005370887,"teacher_disagreement_score":0.021665702,"about_ca_system_score_codex":0.000015759362,"about_ca_system_score_gemma":0.000039062877,"threshold_uncertainty_score":0.3967738},"labels":[],"label_agreement":null},{"id":"W2163352721","doi":"10.1128/iai.70.9.5312-5315.2002","title":"<i>Salmonella enterica</i> Serovar Typhimurium Periplasmic Superoxide Dismutases SodCI and SodCII Are Required for Protection against the Phagocyte Oxidative Burst","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vitamin C and Antioxidants Research","field":"Nursing","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Phagocyte; Respiratory burst; Salmonella enterica; Biology; Microbiology; Salmonella; Superoxide dismutase; Superoxide; Virulence; Oxidative phosphorylation; NADPH oxidase; Oxidative stress; Phagocytosis; Biochemistry; Enzyme; Bacteria","score_opus":0.04670137609655093,"score_gpt":0.2790687162705486,"score_spread":0.23236734017399766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163352721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99561256,0.0005195104,0.0006371097,0.0014117376,0.00037369225,0.0008250023,0.000052793213,0.00010591882,0.00046168987],"genre_scores_gemma":[0.9980053,0.0008862799,0.00003369655,0.00027054996,0.0001296482,0.00011955524,0.000020366562,0.000028118473,0.00050651794],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872494,0.0002966659,0.00022916141,0.00027622763,0.00015635596,0.00031663716],"domain_scores_gemma":[0.9992688,0.00015801858,0.00011747089,0.0002440411,0.00012901587,0.00008269239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000331164,0.00020567824,0.00021378198,0.000105144485,0.0012223332,0.00019333203,0.000091588125,0.0001054995,0.00003592809],"category_scores_gemma":[0.00022658684,0.00015680294,0.00007986921,0.00025468046,0.00033297692,0.00039551166,0.000080591744,0.000352242,0.000015965099],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011979312,0.0009795228,0.02027309,0.00061001955,0.00021712107,0.0000070682736,0.004525288,0.000029472292,0.82149184,0.000066727785,0.0042699333,0.14633201],"study_design_scores_gemma":[0.009287159,0.003905485,0.2290729,0.0008781604,0.000279403,0.00041782757,0.008664781,0.03181765,0.59089947,0.00078294915,0.12230498,0.0016892201],"about_ca_topic_score_codex":0.00041085164,"about_ca_topic_score_gemma":0.00010012333,"teacher_disagreement_score":0.23059233,"about_ca_system_score_codex":0.00006953908,"about_ca_system_score_gemma":0.0000071511013,"threshold_uncertainty_score":0.9401322},"labels":[],"label_agreement":null},{"id":"W2163481558","doi":"10.1128/iai.01373-10","title":"Impact of <i>Salmonella</i> Infection on Host Hormone Metabolism Revealed by Metabolomics","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Biology; Salmonella enterica; Metabolomics; Host (biology); Salmonella; Salmonella infection; Transcriptome; Proteomics; Pathogen; Metabolome; Metabolic pathway; Computational biology; Microbiology; Metabolism; Bioinformatics; Bacteria; Gene; Genetics; Gene expression; Biochemistry","score_opus":0.03551804742793559,"score_gpt":0.2541000456411553,"score_spread":0.21858199821321972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163481558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962582,0.00051365123,0.000011295459,0.000027152846,0.00017003078,0.00014313808,0.00004365545,0.000065278975,0.0027675943],"genre_scores_gemma":[0.99680084,0.0028803188,0.000012401515,0.00011586495,0.00006598872,0.000009656425,0.00004888322,0.0000016564663,0.00006441256],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988522,0.00035891152,0.00029843135,0.000200943,0.00007590179,0.00021362267],"domain_scores_gemma":[0.9993681,0.00014861941,0.00020736741,0.0000966057,0.000083601175,0.00009571466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043606022,0.00018077296,0.0003388732,0.000029722158,0.00017402916,0.000014081875,0.0000780713,0.0001758218,0.00021419128],"category_scores_gemma":[0.00011002591,0.000075813026,0.00018538536,0.0002868341,0.00010630866,0.00014129402,0.000049449427,0.0002344313,0.000019797535],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022098809,0.00035832147,0.44379446,0.000003327985,0.00008049146,3.1181472e-7,0.00010361874,8.511902e-7,0.5410659,0.0001208604,0.0010783654,0.013172556],"study_design_scores_gemma":[0.00023919344,0.0008877936,0.98640686,0.0000047749604,0.00003662512,0.000012996546,0.000013194078,0.0000071996747,0.009137659,0.000297235,0.0028097408,0.00014671378],"about_ca_topic_score_codex":0.021912063,"about_ca_topic_score_gemma":0.00016054387,"teacher_disagreement_score":0.54261243,"about_ca_system_score_codex":0.000022158561,"about_ca_system_score_gemma":0.0000058009655,"threshold_uncertainty_score":0.9846011},"labels":[],"label_agreement":null},{"id":"W2163543661","doi":"10.1128/iai.00850-08","title":"Role of RpoS in the Virulence of <i>Citrobacter rodentium</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Citrobacter rodentium; rpoS; Virulence; Biology; Microbiology; Citrobacter; Enterobacteriaceae; Mutant; Escherichia coli; Plasmid; Shigella flexneri; Shigella; Gene; Genetics; Pathogen; Gene expression; Promoter","score_opus":0.012119055136186625,"score_gpt":0.25483070841305766,"score_spread":0.24271165327687103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163543661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974733,0.0004711466,0.000027208507,0.000017043163,0.000013634967,0.00006875255,0.0000020845785,0.0000014235655,0.0019254354],"genre_scores_gemma":[0.99777037,0.0021097527,0.000021986112,0.000036348225,0.000011511144,0.000008036672,0.0000030234953,0.00000198776,0.00003699454],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99962044,0.00011610821,0.00008983893,0.000053518692,0.00005846193,0.00006162805],"domain_scores_gemma":[0.999752,0.000015457637,0.000035963058,0.00013405888,0.000053877262,0.000008667829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001753845,0.000039175375,0.00006192638,0.000022004291,0.000053004307,0.0000022347194,0.00005975696,0.000032138523,0.0000039610422],"category_scores_gemma":[0.00008509574,0.000028918153,0.000025497075,0.00008204901,0.00013748345,0.0000034240873,0.00006767237,0.000078736026,4.3473298e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024566056,0.00007828696,0.19893411,0.00001116241,0.0000112563785,1.4159315e-7,0.00025820077,0.0000032995238,0.80009556,0.000019816509,0.000046016732,0.00051756855],"study_design_scores_gemma":[0.00018349083,0.00014535138,0.8191598,0.000006149757,0.0000024760066,0.0000083253,0.00011275999,0.000011858959,0.17764641,0.000036379995,0.0026546784,0.000032295127],"about_ca_topic_score_codex":0.0006947799,"about_ca_topic_score_gemma":0.00018437176,"teacher_disagreement_score":0.62244916,"about_ca_system_score_codex":0.0000024401556,"about_ca_system_score_gemma":0.000017036064,"threshold_uncertainty_score":0.11792481},"labels":[],"label_agreement":null},{"id":"W2163770062","doi":"10.1128/iai.01505-13","title":"<i>ALOX12</i> in Human Toxoplasmosis","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"National Center for Advancing Translational Sciences; National Center for Research Resources; National Institute of Allergy and Infectious Diseases","keywords":"Biology; Toxoplasma gondii; Gene knockdown; Arachidonic acid; Immunology; Cell culture; Genetics; Biochemistry; Antibody","score_opus":0.01399599528091494,"score_gpt":0.2724513230128195,"score_spread":0.25845532773190455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163770062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9856358,0.00020866109,0.00005388746,0.0001419952,0.00021769869,0.00010128013,0.000002661061,0.00007007825,0.013567941],"genre_scores_gemma":[0.9984128,0.00017272288,0.000008710386,0.000098310506,0.0000110711635,0.000022875945,0.000016113245,0.0000064254846,0.0012509839],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990886,0.00038203874,0.0001515867,0.00013571992,0.000020308777,0.00022175086],"domain_scores_gemma":[0.99959797,0.00015166069,0.000035700275,0.00016598382,0.00003337084,0.000015322841],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045081088,0.00009918493,0.0001628591,0.00015018012,0.00034569192,0.000016620204,0.000060671893,0.00012287825,0.00019942607],"category_scores_gemma":[0.00021077227,0.000090405934,0.00003118738,0.00014239624,0.00020197158,0.0000925299,0.000118753225,0.00041548384,0.00014382493],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006317175,0.00029249836,0.43448326,0.000041676896,0.00008806551,0.0000010095957,0.00085065985,0.000005923695,0.53388447,0.0042660753,0.003435676,0.022587532],"study_design_scores_gemma":[0.0015068239,0.0003022933,0.7723151,0.000026556838,0.000008363282,0.00002974396,0.000095166244,0.000006727385,0.07633185,0.00069371786,0.1485115,0.00017219128],"about_ca_topic_score_codex":0.0022980089,"about_ca_topic_score_gemma":0.00123259,"teacher_disagreement_score":0.4575526,"about_ca_system_score_codex":0.000030204355,"about_ca_system_score_gemma":0.000008687459,"threshold_uncertainty_score":0.36866468},"labels":[],"label_agreement":null},{"id":"W2163807503","doi":"10.1128/iai.72.6.3315-3324.2004","title":"Clearance of<i>Citrobacter rodentium</i>Requires B Cells but Not Secretory Immunoglobulin A (IgA) or IgM Antibodies","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":200,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases","keywords":"Citrobacter rodentium; Biology; Antibody; Immunoglobulin A; Immunoglobulin M; Secretory IgA; Immunoglobulin G; Microbiology; Immunology; Citrobacter; Virology; Enterobacteriaceae; Immune system; Escherichia coli; Genetics","score_opus":0.017546480153398335,"score_gpt":0.27943318634034214,"score_spread":0.2618867061869438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163807503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997532,0.00091449014,0.0004249278,0.000066871144,0.00018668277,0.00015701377,0.000020097981,0.000021200833,0.000676715],"genre_scores_gemma":[0.99288666,0.006007789,0.00024768195,0.00013735406,0.00008006836,0.000014772979,0.00001511498,0.000013870235,0.0005966995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991316,0.00012092752,0.00020595848,0.00019742595,0.00012647432,0.0002175864],"domain_scores_gemma":[0.999395,0.000021384862,0.000092364164,0.0002874784,0.00015379011,0.00004995027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024018693,0.00015044285,0.00018929984,0.000050646282,0.00021960492,0.00003376352,0.00010678012,0.000110515924,0.000023517865],"category_scores_gemma":[0.00015731248,0.00012837315,0.00008550388,0.00011079196,0.00033609624,0.000016396241,0.00023967588,0.00019282065,0.000008402318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004326864,0.000117795134,0.005976413,0.000082011735,0.000110379464,0.000001820511,0.00014723584,0.000044433073,0.99207425,0.000027635624,0.00011770775,0.00086764304],"study_design_scores_gemma":[0.000896727,0.0004886139,0.23704666,0.000049399776,0.000017658595,0.00001411135,0.00010932287,0.0000075010053,0.7538121,0.00004290067,0.007338931,0.00017612992],"about_ca_topic_score_codex":0.0012179124,"about_ca_topic_score_gemma":0.00031846605,"teacher_disagreement_score":0.23826219,"about_ca_system_score_codex":0.00002232074,"about_ca_system_score_gemma":0.00009076356,"threshold_uncertainty_score":0.52349055},"labels":[],"label_agreement":null},{"id":"W2163837366","doi":"10.1128/iai.02542-14","title":"Role of BrnQ1 and BrnQ2 in Branched-Chain Amino Acid Transport and Virulence in Staphylococcus aureus","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; University of Virginia","keywords":"Virulence; Biology; Staphylococcus aureus; Mutant; Microbiology; Phenotype; Amino acid; Gene; Transporter; In vivo; Virulence factor; Bacteria; Biochemistry; Genetics","score_opus":0.007341329209860255,"score_gpt":0.24104983721058015,"score_spread":0.2337085080007199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163837366","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99749404,0.00079673645,0.00022948213,0.000068317146,0.00003578698,0.00028340885,0.000007727507,0.00002107638,0.0010634264],"genre_scores_gemma":[0.99872816,0.0009875181,0.00009676234,0.00011501074,0.000017145598,0.000009138699,0.0000052650626,0.000011133008,0.000029864406],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99910164,0.00010863563,0.00031615084,0.00019757003,0.000095866606,0.00018012192],"domain_scores_gemma":[0.9995125,0.000083555205,0.00008654356,0.0001912486,0.000050029674,0.00007611012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000481427,0.00014258304,0.00034109887,0.00022680644,0.00005598486,0.000009661591,0.000034336874,0.00013069865,0.000017413286],"category_scores_gemma":[0.00013796515,0.00014035092,0.000030323592,0.00024543022,0.00025724617,0.00012716446,0.000028595272,0.00034181058,9.4420136e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019776654,0.00011599563,0.6666982,0.00015055423,0.000007894494,0.0000023837024,0.00080470584,0.0000032408896,0.31552175,0.00011595813,0.000003777957,0.016377784],"study_design_scores_gemma":[0.0016435104,0.00023968436,0.9711993,0.00022440297,0.000016375523,0.000010557863,0.00019494169,0.00017926669,0.025043955,0.000328627,0.0007972683,0.00012214595],"about_ca_topic_score_codex":0.00330857,"about_ca_topic_score_gemma":0.0031712938,"teacher_disagreement_score":0.30450106,"about_ca_system_score_codex":0.000031425458,"about_ca_system_score_gemma":0.000030457366,"threshold_uncertainty_score":0.57233447},"labels":[],"label_agreement":null},{"id":"W2163844022","doi":"10.1128/iai.74.1.192-201.2006","title":"Enterocyte Cytoskeleton Changes Are Crucial for Enhanced Translocation of Nonpathogenic<i>Escherichia coli</i>across Metabolically Stressed Gut Epithelia","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; McMaster University","funders":"Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; McMaster University","keywords":"Biology; Internalization; Enterocyte; Paracellular transport; Cell biology; Transcellular; Endocytosis; Microbiology; Transcytosis; Dynamin; Biochemistry; Cell; Small intestine","score_opus":0.012573148771851114,"score_gpt":0.28899466237120114,"score_spread":0.27642151359935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163844022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899255,0.0005456976,0.008641194,0.00022540573,0.00012953533,0.00032699868,0.0001523744,0.000013656501,0.00003964684],"genre_scores_gemma":[0.99695116,0.0017189428,0.00045523726,0.00038053692,0.00019629695,0.00004503338,0.00012916228,0.000013472088,0.0001101822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928665,0.00009257988,0.0002100154,0.00017869471,0.000046734356,0.0001853524],"domain_scores_gemma":[0.99945575,0.000011700627,0.000149664,0.00017601924,0.00015233169,0.00005452665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023977381,0.00012384733,0.00018779184,0.00002860985,0.00017446047,0.000016309008,0.00006507468,0.00015147038,0.000011187408],"category_scores_gemma":[0.000041544026,0.00012386951,0.00007857323,0.00006564101,0.00006317436,0.000007658435,0.000027722774,0.000090977104,0.0000015926522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024150935,0.0001246126,0.000522919,0.000074426505,0.000032337823,2.4231134e-8,0.0002922448,0.000012166563,0.9847371,0.000011499962,0.000050940274,0.013900245],"study_design_scores_gemma":[0.0010777314,0.00029501077,0.10005907,0.000022787332,0.000019838288,0.000001957405,0.000060908158,0.000034117737,0.8756164,0.000005243711,0.022693269,0.00011369062],"about_ca_topic_score_codex":0.00031109195,"about_ca_topic_score_gemma":0.0037984664,"teacher_disagreement_score":0.1091207,"about_ca_system_score_codex":0.000012381941,"about_ca_system_score_gemma":0.000041395397,"threshold_uncertainty_score":0.5051252},"labels":[],"label_agreement":null},{"id":"W2163919171","doi":"10.1128/iai.00078-11","title":"Infection of Polarized Airway Epithelial Cells by Normal and Small-Colony Variant Strains of Staphylococcus aureus Is Increased in Cells with Abnormal Cystic Fibrosis Transmembrane Conductance Regulator Function and Is Influenced by NF-κB","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds Québécois de la Recherche sur la Nature et les Technologies; Cystic Fibrosis Canada","keywords":"Staphylococcus aureus; Cystic fibrosis; Biology; Proinflammatory cytokine; Cystic fibrosis transmembrane conductance regulator; Microbiology; Pathogen; Phenotype; Respiratory epithelium; Pseudomonas aeruginosa; Immunology; Epithelium; Inflammation; Bacteria; Gene; Genetics","score_opus":0.010694430665222259,"score_gpt":0.23095525355077187,"score_spread":0.2202608228855496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163919171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964542,0.0003455171,0.0018992767,0.00002660704,0.00006599988,0.00071404176,0.00036996754,0.000029318586,0.00009509177],"genre_scores_gemma":[0.9987166,0.00052579533,0.000558297,0.00006456621,0.000013159944,0.000026133128,0.000035219517,0.000019881723,0.00004033319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984411,0.00023546553,0.0004885488,0.00029797756,0.00025067825,0.00028623737],"domain_scores_gemma":[0.99895966,0.00014294738,0.00024937926,0.0002470175,0.00021347753,0.00018749523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046839428,0.00024875568,0.00049871753,0.00026147754,0.00013467875,0.000022998665,0.000046871883,0.00018731087,0.00016344029],"category_scores_gemma":[0.00008203662,0.00021703243,0.000049861377,0.00040515276,0.0005121802,0.00039939475,0.00003643706,0.00040618578,8.9559313e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00398514,0.000403569,0.045321498,0.0005921544,0.00010187116,0.0000023711814,0.0011809273,0.0000042768856,0.9472542,0.000010517785,0.000037560465,0.001105949],"study_design_scores_gemma":[0.005052041,0.0030155715,0.38499913,0.0001787702,0.00011556433,0.00002300316,0.00008468981,0.00022622367,0.60596776,0.000043428525,0.00012637985,0.00016748488],"about_ca_topic_score_codex":0.02623684,"about_ca_topic_score_gemma":0.00069764006,"teacher_disagreement_score":0.34128642,"about_ca_system_score_codex":0.000056389086,"about_ca_system_score_gemma":0.00012558841,"threshold_uncertainty_score":0.98024756},"labels":[],"label_agreement":null},{"id":"W2164035893","doi":"10.1128/iai.01254-10","title":"Burkholderia pseudomallei-Induced Expression of a Negative Regulator, Sterile-α and Armadillo Motif-Containing Protein, in Mouse Macrophages: a Possible Mechanism for Suppression of the MyD88-Independent Pathway","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Office of the Higher Education Commission; Thailand Research Fund; National Science and Technology Development Agency; University of Calgary","keywords":"Burkholderia pseudomallei; Biology; Armadillo; Melioidosis; Regulator; Microbiology; Burkholderia; Cell biology; Genetics; Bacteria; Gene","score_opus":0.038460475426056226,"score_gpt":0.25864324779558173,"score_spread":0.2201827723695255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164035893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975096,0.00003531325,0.00044557778,0.000023874005,0.00020485354,0.0014661136,0.00001534349,0.000028155135,0.00027115198],"genre_scores_gemma":[0.9989481,0.000047956804,0.00061868224,0.000027091475,0.000021243774,0.0001858674,0.0000033451656,0.000021474434,0.00012626994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988701,0.00018261309,0.00041544146,0.00021438465,0.00013946611,0.0001780394],"domain_scores_gemma":[0.99902505,0.000049469054,0.00029158674,0.0003385831,0.00021757855,0.00007773115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039528756,0.0001774997,0.00035878026,0.00019245115,0.0001927971,0.000014480864,0.000058000307,0.00018138575,0.00005044133],"category_scores_gemma":[0.0001900317,0.00012689362,0.000099545956,0.00019733579,0.00009304797,0.00018575917,0.00012809556,0.00025774352,2.4054665e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070191297,0.00036286388,0.011004793,0.00025711828,0.000032677297,9.287174e-7,0.0031055629,6.5965384e-7,0.9825608,0.00042068728,0.0000033205004,0.0015486638],"study_design_scores_gemma":[0.0032596975,0.0009839245,0.12285911,0.000612243,0.000037433325,0.000033405537,0.0010171428,0.00013887134,0.8703484,0.0005950806,0.000010472861,0.00010422888],"about_ca_topic_score_codex":0.002663683,"about_ca_topic_score_gemma":0.00011847598,"teacher_disagreement_score":0.11221243,"about_ca_system_score_codex":0.000041708794,"about_ca_system_score_gemma":0.00006726031,"threshold_uncertainty_score":0.5174572},"labels":[],"label_agreement":null},{"id":"W2164092246","doi":"10.1128/iai.71.3.1116-1124.2003","title":"Allelic Variation in<i>TLR4</i>Is Linked to Susceptibility to<i>Salmonella enterica</i>Serovar Typhimurium Infection in Chickens","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Salmonella enterica; Serotype; Salmonella; Allele; Microbiology; Virology; Enterobacteriaceae; Salmonella infection; Genetics; Gene; Bacteria; Escherichia coli","score_opus":0.02650150714060488,"score_gpt":0.25928360002023987,"score_spread":0.232782092879635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164092246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972329,0.0000250954,0.000064009844,0.0007869924,0.00034925886,0.0003884287,0.0000053638078,0.00005856398,0.0010893958],"genre_scores_gemma":[0.99777865,0.0002265627,0.000052751482,0.0017590562,0.000066697794,0.000037132722,0.000016828297,0.00000171486,0.00006061132],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981567,0.0006795042,0.00038671395,0.00037485056,0.000089542315,0.00031267354],"domain_scores_gemma":[0.9994077,0.00018585152,0.000078650046,0.00012005096,0.00007214115,0.00013558143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001041642,0.00017432467,0.00026561858,0.00008046376,0.00014879479,0.00004161696,0.00007616792,0.00018959322,0.0002535818],"category_scores_gemma":[0.00043801966,0.000096238844,0.00006366184,0.00084919605,0.000032210126,0.00014264298,0.00006655925,0.00028934903,0.00007938542],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000051960185,0.00022187852,0.8655488,0.0000060878506,0.000005279398,6.83146e-7,0.00049054023,0.000031747797,0.12899831,0.000070974434,0.0000893445,0.004484374],"study_design_scores_gemma":[0.000231501,0.0003788209,0.98785996,0.00001588213,0.0000042404326,0.000008597297,0.000041136045,0.000033800396,0.00055016787,0.00088900427,0.009806978,0.00017990703],"about_ca_topic_score_codex":0.020699983,"about_ca_topic_score_gemma":0.02036111,"teacher_disagreement_score":0.12844814,"about_ca_system_score_codex":0.000099738754,"about_ca_system_score_gemma":0.0000100215575,"threshold_uncertainty_score":0.9975147},"labels":[],"label_agreement":null},{"id":"W2164417556","doi":"10.1128/iai.00255-12","title":"Enterohemorrhagic Escherichia coli O157:H7 Shiga Toxins Inhibit Gamma Interferon-Mediated Cellular Activation","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Escherichia coli; Microbiology; Shiga toxin; Phosphorylation; Tyrosine; Tyrosine phosphorylation; Interferon gamma; Interferon; Pathogen; Immune system; Virology; Biochemistry; Immunology; Gene","score_opus":0.017030396958406635,"score_gpt":0.2626463031342608,"score_spread":0.24561590617585416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164417556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99536705,0.00045949337,0.0013475802,0.000108619846,0.00024748605,0.00021929941,0.000005716427,0.000039580424,0.0022051902],"genre_scores_gemma":[0.9982448,0.00058380223,0.00008803895,0.00026239813,0.00023115466,0.000032144955,0.00011903323,0.000019464029,0.0004191322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989656,0.00022409123,0.00018218238,0.00018070228,0.000120781166,0.0003266441],"domain_scores_gemma":[0.99939454,0.000033154523,0.00008074101,0.00024786984,0.00011336127,0.00013036339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035062098,0.00017531645,0.00014448582,0.00006533867,0.00024204564,0.000043033713,0.00007921035,0.00015481409,0.000062889],"category_scores_gemma":[0.0003250957,0.00016752938,0.00006006196,0.0001708876,0.00012123223,0.00003130713,0.0002590704,0.0002949525,0.000027834789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010057262,0.00020855827,0.03780974,0.00003201831,0.00006511321,2.55391e-7,0.00021666175,0.0000015834814,0.95990616,0.000020866857,0.0005949754,0.0010435225],"study_design_scores_gemma":[0.0008475895,0.00061351346,0.14750767,0.00002924217,0.000020621837,0.000005801916,0.00024806813,0.0001326099,0.7982225,0.000015446227,0.0520574,0.0002995469],"about_ca_topic_score_codex":0.00023984762,"about_ca_topic_score_gemma":0.00005068264,"teacher_disagreement_score":0.16168365,"about_ca_system_score_codex":0.000044044045,"about_ca_system_score_gemma":0.00003319088,"threshold_uncertainty_score":0.68316495},"labels":[],"label_agreement":null},{"id":"W2164692599","doi":"10.1128/iai.69.9.5294-5304.2001","title":"Pulmonary and Systemic Host Response to<i>Streptococcus pneumoniae</i>and<i>Klebsiella pneumoniae</i>Bacteremia in Normal and Immunosuppressed Mice","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Streptococcus pneumoniae; Bacteremia; Klebsiella pneumoniae; Immunology; Biology; Pneumonia; Sepsis; Leukopenia; Microbiology; Medicine; Antibiotics; Internal medicine; Chemotherapy","score_opus":0.024578138766485992,"score_gpt":0.28613583385091973,"score_spread":0.2615576950844337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164692599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99504155,0.0025183915,0.000003034913,0.00091259176,0.00011144648,0.0007118062,0.000009005472,0.000056633755,0.00063555146],"genre_scores_gemma":[0.99201983,0.007281013,0.000011625017,0.00034624754,0.000031347052,0.00010407889,0.000013022189,0.000021325155,0.00017153635],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99866444,0.0002750634,0.00033625567,0.00033518358,0.000117297015,0.00027174642],"domain_scores_gemma":[0.999029,0.00033128288,0.00008124163,0.00027849153,0.000062418745,0.00021755749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044413813,0.0002529331,0.00038646077,0.0002417434,0.00021571,0.000081756574,0.000036352183,0.00015034043,0.000026500235],"category_scores_gemma":[0.0001338982,0.00022634023,0.000040669605,0.00023903605,0.00010143748,0.00018175735,0.00012834286,0.00032019158,0.000009485286],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007283687,0.00027095617,0.7815321,0.000088036926,0.000044783166,0.00009292975,0.00065941503,0.0000010572451,0.21013662,0.000004304378,0.000020065507,0.006421377],"study_design_scores_gemma":[0.0020979666,0.00070920464,0.98710257,0.00043107345,0.00008213007,0.0025693246,0.00030389047,0.00006524371,0.003681674,0.000008364861,0.0027401284,0.00020845071],"about_ca_topic_score_codex":0.0018200182,"about_ca_topic_score_gemma":0.0001341925,"teacher_disagreement_score":0.20645495,"about_ca_system_score_codex":0.000088174536,"about_ca_system_score_gemma":0.00003602778,"threshold_uncertainty_score":0.92298865},"labels":[],"label_agreement":null},{"id":"W2164753077","doi":"10.1128/iai.01249-07","title":"Development of <i>Galleria mellonella</i> as an Alternative Infection Model for the <i>Burkholderia cepacia</i> Complex","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":154,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Galleria mellonella; Virulence; Biology; Burkholderia cepacia complex; Microbiology; Burkholderia; Bacteria; Genetics; Gene","score_opus":0.10251270536096731,"score_gpt":0.28028501335657735,"score_spread":0.17777230799561006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164753077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987891,0.00001732729,0.00017293631,0.00006827378,0.00018785898,0.0002556883,0.000014298699,0.000034246666,0.0004603262],"genre_scores_gemma":[0.9990892,0.00027943222,0.00022163652,0.00019236818,0.00009069192,0.00003362316,0.000042631622,0.000001063187,0.00004936597],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993262,0.000074822,0.00023400807,0.00013744539,0.000094610405,0.00013289663],"domain_scores_gemma":[0.9995469,0.00008563155,0.00013612879,0.000054040418,0.00013488508,0.000042406857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027926083,0.00011547796,0.00014495086,0.000011419946,0.0010115528,0.000040329527,0.000084865074,0.0000656344,0.000117019474],"category_scores_gemma":[0.000026524138,0.000044541845,0.000060856964,0.00011611293,0.00013028797,0.0002067961,0.00004430005,0.00006311455,0.0000033728663],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090514885,0.00017329823,0.0035527807,0.000007132722,0.00003153953,7.923421e-8,0.0016931057,0.00005682033,0.982106,0.00028633742,0.0000814636,0.011920945],"study_design_scores_gemma":[0.00049302564,0.0007074209,0.68714505,0.000023036999,0.000026136326,0.000028019684,0.00028269674,0.008177519,0.27744517,0.0012180399,0.024106013,0.0003478532],"about_ca_topic_score_codex":0.004390243,"about_ca_topic_score_gemma":0.0023246207,"teacher_disagreement_score":0.70466083,"about_ca_system_score_codex":0.000016089549,"about_ca_system_score_gemma":0.000017514492,"threshold_uncertainty_score":0.7780148},"labels":[],"label_agreement":null},{"id":"W2164838577","doi":"10.1128/iai.72.10.5638-5645.2004","title":"<i>Pseudomonas aeruginosa relA</i> Contributes to Virulence in <i>Drosophila melanogaster</i>","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; rpoS; Pseudomonas aeruginosa; Pyocyanin; Quorum sensing; Microbiology; Stringent response; Sigma factor; Regulon; Virulence; Homoserine; Mutant; Gene; Biochemistry; Bacteria; Genetics; Gene expression; Promoter","score_opus":0.008021846298525873,"score_gpt":0.23106057155883575,"score_spread":0.22303872526030988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164838577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99789965,0.00018986603,0.00020336057,0.0005389269,0.00027410444,0.0001396081,0.000007731301,0.000015587362,0.0007311441],"genre_scores_gemma":[0.9982579,0.0003377869,0.00014824158,0.0011073215,0.00006722391,0.000006183579,0.000027897366,0.000008558554,0.000038918424],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938077,0.00005596352,0.00015843112,0.00018653,0.000042013966,0.00017631626],"domain_scores_gemma":[0.9996713,0.000007879967,0.00003613035,0.00018274499,0.000041764215,0.000060185776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017073828,0.000113560905,0.00012002149,0.000055194538,0.00011240161,0.00003959359,0.000048029586,0.000121118996,0.0000036436697],"category_scores_gemma":[0.000069012334,0.00011297977,0.000034554072,0.00013123476,0.000054730823,0.000008753585,0.000097058626,0.0001235582,0.000013516602],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007161164,0.000051421295,0.008857077,0.00000571708,0.000008748718,0.000001742416,0.00004302547,0.000034662524,0.9894164,0.00021527396,0.00006222018,0.0012320555],"study_design_scores_gemma":[0.0013043275,0.00030915326,0.11571245,0.00005997446,0.000007713218,0.000044366807,0.000028580409,0.0000019426668,0.8525531,0.00020440208,0.029576056,0.00019790139],"about_ca_topic_score_codex":0.0010050418,"about_ca_topic_score_gemma":0.0005316702,"teacher_disagreement_score":0.1368633,"about_ca_system_score_codex":0.000022018523,"about_ca_system_score_gemma":0.000028209493,"threshold_uncertainty_score":0.46071813},"labels":[],"label_agreement":null},{"id":"W2164896346","doi":"10.1128/iai.71.7.4034-4039.2003","title":"Recombinant Soluble CD14 Reduces Severity of Intramammary Infection by<i>Escherichia coli</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Escherichia coli; Lipopolysaccharide; Biology; Microbiology; Bacteria; CD14; Tumor necrosis factor alpha; Saline; Recombinant DNA; Immune system; Cytokine; Immunology; Lactoferrin; Escherichia coli infection; Endocrinology; Biochemistry","score_opus":0.01879227836400975,"score_gpt":0.22813948595447325,"score_spread":0.2093472075904635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164896346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929437,0.00014778128,0.000030919073,0.000121521014,0.0008111559,0.00013136944,0.000008308297,0.000057636094,0.005747609],"genre_scores_gemma":[0.9979259,0.0012914896,0.00003478459,0.00014141272,0.000029899693,0.00001049895,0.000034497727,8.3750905e-7,0.00053070264],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99899226,0.0003829619,0.00022962526,0.00014949287,0.00009135881,0.00015430186],"domain_scores_gemma":[0.9995904,0.00010180017,0.00011418847,0.000058911686,0.00007130741,0.000063396554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005631165,0.00010981499,0.0001652433,0.000011989039,0.00033461893,0.00003728227,0.00005368323,0.000121069264,0.00044086014],"category_scores_gemma":[0.00016901345,0.000055733548,0.00005895675,0.00026193762,0.00010845979,0.00020750219,0.000039881405,0.00021289561,0.0000070973933],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009305262,0.000990894,0.08845141,0.00007751865,0.00005026242,7.2425865e-7,0.00028019916,0.0000040653,0.7782025,0.0026576335,0.0151193235,0.11407246],"study_design_scores_gemma":[0.00038854478,0.000679844,0.44081646,0.000047236954,0.000022639635,0.000018830626,0.00013255971,0.000021071648,0.11157976,0.0031129834,0.44286704,0.00031301027],"about_ca_topic_score_codex":0.0070336377,"about_ca_topic_score_gemma":0.0011369612,"teacher_disagreement_score":0.6666227,"about_ca_system_score_codex":0.0000205662,"about_ca_system_score_gemma":0.0000112601665,"threshold_uncertainty_score":0.9995786},"labels":[],"label_agreement":null},{"id":"W2164982854","doi":"10.1128/iai.01527-13","title":"Requirement of the Pseudomonas aeruginosa CbrA Sensor Kinase for Full Virulence in a Murine Acute Lung Infection Model","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Virulence; Biology; Mutant; Microbiology; Pseudomonas aeruginosa; Biofilm; Wild type; Bacteria; Pathogen; Gene; Genetics","score_opus":0.01255394037792892,"score_gpt":0.25210139301648354,"score_spread":0.23954745263855462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164982854","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813837,0.00003955189,0.0009985903,0.00012285622,0.00019081343,0.00038237788,0.000010841799,0.000007661512,0.000108920576],"genre_scores_gemma":[0.99914986,0.00027930402,0.00030084891,0.00009632426,0.000044049902,0.000026918135,0.00002119857,0.000007780672,0.00007372812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994379,0.00006392051,0.00018326704,0.00013831846,0.00004532092,0.00013125838],"domain_scores_gemma":[0.9995732,0.0000083889245,0.00009270517,0.00020770896,0.000090110916,0.000027894534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001413341,0.000100093384,0.000103001425,0.00003660554,0.000114458155,0.000021488298,0.000037761456,0.0000997097,0.000007923431],"category_scores_gemma":[0.000046328936,0.00007907618,0.000065541215,0.00007550687,0.000062354,0.000015479596,0.000088105044,0.00007020179,8.414117e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006914801,0.0000718149,0.006410011,0.000029282182,0.000020737723,6.47263e-8,0.000036488666,0.00012499931,0.9913335,0.000033791366,0.00009108836,0.0017791025],"study_design_scores_gemma":[0.0008743196,0.00030925954,0.08696455,0.000045763096,0.000029992056,0.000017044797,0.000016476033,0.007724022,0.90282387,0.00007399091,0.00096192886,0.00015879488],"about_ca_topic_score_codex":0.0013816691,"about_ca_topic_score_gemma":0.0002680885,"teacher_disagreement_score":0.08850961,"about_ca_system_score_codex":0.000017456048,"about_ca_system_score_gemma":0.000024360366,"threshold_uncertainty_score":0.32246327},"labels":[],"label_agreement":null},{"id":"W2165241408","doi":"10.1128/iai.00949-09","title":"CD44 Deficiency Is Associated with Enhanced<i>Escherichia coli</i>-Induced Proinflammatory Cytokine and Chemokine Release by Peritoneal Macrophages","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Proteoglycans and glycosaminoglycans research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Proinflammatory cytokine; Chemokine; Tumor necrosis factor alpha; Lipopolysaccharide; Cytokine; Immunology; Macrophage; Microbiology; Immune system; Inflammation; In vitro; Biochemistry","score_opus":0.007366453816786469,"score_gpt":0.24319274719179482,"score_spread":0.23582629337500835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165241408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785453,0.0004623405,0.00025085552,0.00021773641,0.000025998139,0.00029144195,0.00003052567,0.00002921034,0.0008373413],"genre_scores_gemma":[0.9982119,0.0007112941,0.000042489035,0.00034011487,0.00003923498,0.000025850239,0.000082527535,0.000014556208,0.00053200836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902636,0.000100249126,0.00016043507,0.00029257013,0.00014457181,0.0002758193],"domain_scores_gemma":[0.99942744,0.000009350896,0.00007768286,0.00022874045,0.00012993265,0.00012688508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002048371,0.00018775526,0.00016856215,0.00004492808,0.0003061445,0.000063978994,0.00007496596,0.00016400605,0.000021906955],"category_scores_gemma":[0.00009389864,0.00014997736,0.000032564392,0.00017146603,0.0001255662,0.000016404489,0.000056778652,0.000267871,0.0000015631691],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019033818,0.00017008903,0.0018832046,0.000017019203,0.000026038277,0.0000033046133,0.00007856743,7.414757e-7,0.98903775,0.0000052751598,0.00034258506,0.008245069],"study_design_scores_gemma":[0.0012125977,0.0016575515,0.06456397,0.00002509584,0.000016306874,0.00002558163,0.000035647994,0.000050704235,0.92894673,0.000017283806,0.0032068903,0.00024163212],"about_ca_topic_score_codex":0.00029905653,"about_ca_topic_score_gemma":0.000059769,"teacher_disagreement_score":0.06268076,"about_ca_system_score_codex":0.000026349664,"about_ca_system_score_gemma":0.000079983045,"threshold_uncertainty_score":0.61158997},"labels":[],"label_agreement":null},{"id":"W2165244873","doi":"10.1128/iai.70.10.5730-5739.2002","title":"Identification of a Streptolysin S-Associated Gene Cluster and Its Role in the Pathogenesis of<i>Streptococcus iniae</i>Disease","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Streptococcus iniae; Biology; Cytolysin; Microbiology; Streptolysin; Complementation; Pneumolysin; Virulence; Mutant; Virology; Gene; Genetics; Streptococcus pneumoniae","score_opus":0.022089274297152003,"score_gpt":0.27106596288824364,"score_spread":0.24897668859109162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165244873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984686,0.0005887073,0.000012877467,0.0000841602,0.000034998706,0.0004902959,0.000026636815,0.000015035309,0.00027868853],"genre_scores_gemma":[0.9992574,0.0005238366,0.0000043994023,0.00004050291,0.000009598461,0.00006661605,0.00002049547,0.0000059171794,0.000071268354],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992092,0.00018124603,0.0003058658,0.00011815014,0.000099051846,0.000086471875],"domain_scores_gemma":[0.9994154,0.00007935673,0.00015401235,0.00019857961,0.00010452269,0.00004810964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022555984,0.00009202326,0.00017420453,0.00013264344,0.00009003057,0.000012341745,0.000024540774,0.00006086565,0.00006335093],"category_scores_gemma":[0.00017055373,0.000069344154,0.00005935165,0.00032358157,0.000056634097,0.0000860734,0.000023858323,0.00010336093,0.0000036747213],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048011083,0.0012042352,0.9392335,0.000054264983,0.00007940954,0.0000021260544,0.00063826167,0.00000724078,0.050572835,0.000035058052,0.000014717557,0.008110346],"study_design_scores_gemma":[0.0012765828,0.0001645807,0.9878719,0.00004578433,0.00013642719,0.000010369397,0.0001139777,0.0012155746,0.008994677,0.00006961496,0.000046664012,0.000053862525],"about_ca_topic_score_codex":0.00039315506,"about_ca_topic_score_gemma":0.000059020756,"teacher_disagreement_score":0.04863839,"about_ca_system_score_codex":0.000025175825,"about_ca_system_score_gemma":0.000011758492,"threshold_uncertainty_score":0.28277725},"labels":[],"label_agreement":null},{"id":"W2165340588","doi":"10.1128/iai.70.6.2828-2836.2002","title":"Vaccination with Plasmid DNA Encoding TSA/LmSTI1 Leishmanial Fusion Proteins Confers Protection against<i>Leishmania major</i>Infection in Susceptible BALB/c Mice","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"DNA vaccination; Biology; Virology; Vaccination; Gene gun; Adjuvant; Antigen; Immune system; Leishmania major; Immunization; Cutaneous leishmaniasis; Tuberculosis vaccines; Plasmid; Immunology; Leishmania; Microbiology; Mycobacterium tuberculosis; Leishmaniasis; DNA; Tuberculosis; Genetics; Medicine","score_opus":0.03277677615547072,"score_gpt":0.26760160689029994,"score_spread":0.2348248307348292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165340588","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9822118,0.000109708504,0.0008112922,0.00079302944,0.0002472034,0.0023851197,0.0000031983557,0.00027522852,0.01316339],"genre_scores_gemma":[0.99624956,0.0023410767,0.00011722015,0.0001233849,0.00016938159,0.00035234995,0.000029448935,0.00004649285,0.00057107554],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99762374,0.00038175925,0.0004777417,0.00050069194,0.0005092943,0.000506753],"domain_scores_gemma":[0.9987825,0.00008149608,0.00022267667,0.00032380558,0.0004222786,0.0001671996],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00075383513,0.0003596525,0.000453282,0.00078395207,0.00075950194,0.00014985213,0.00007008187,0.00024273616,0.0003520772],"category_scores_gemma":[0.00045032855,0.0003257268,0.00009347687,0.0009569085,0.00012778713,0.000847438,0.0001133381,0.0010203945,0.00006923296],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018115725,0.0022413142,0.4842245,0.0011974347,0.0002961914,0.00007300965,0.0033827953,0.00019039665,0.43392122,0.00017528432,0.001320596,0.07116571],"study_design_scores_gemma":[0.0077532507,0.0035956407,0.91294074,0.00060023135,0.00009452394,0.00026805108,0.00040717988,0.00657705,0.061267734,0.000046466834,0.0058864653,0.00056264806],"about_ca_topic_score_codex":0.0072362456,"about_ca_topic_score_gemma":0.0070833745,"teacher_disagreement_score":0.42871627,"about_ca_system_score_codex":0.0006225499,"about_ca_system_score_gemma":0.00006771567,"threshold_uncertainty_score":0.9999195},"labels":[],"label_agreement":null},{"id":"W2165660929","doi":"10.1128/iai.72.9.5115-5125.2004","title":"SseK1 and SseK2 Are Novel Translocated Proteins of<i>Salmonella enterica</i>Serovar Typhimurium","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Salmonella enterica; Virulence; Microbiology; Secretion; Effector; Type three secretion system; Salmonella; Pathogenicity island; Chromosomal translocation; Intracellular parasite; Enterobacteriaceae; Pathogen; Mutant; Escherichia coli; Bacteria; Intracellular; Cell biology; Biochemistry; Gene; Genetics","score_opus":0.025062245304446402,"score_gpt":0.22181689628070347,"score_spread":0.19675465097625708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165660929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837387,0.00022844979,0.00012802926,0.00061338756,0.00009283739,0.0001749394,0.000016257776,0.000054518696,0.00031772666],"genre_scores_gemma":[0.9992209,0.00041731805,0.00006373316,0.00019375171,0.00004739008,0.000010294722,0.000019078421,0.0000010653042,0.00002646975],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993048,0.000089508416,0.00021141808,0.00017489886,0.00005736389,0.00016203291],"domain_scores_gemma":[0.9996272,0.00007151099,0.000113630165,0.000056537672,0.00006031409,0.00007082292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021614433,0.0001236253,0.00021744195,0.000016758606,0.00016290297,0.00001802635,0.00006277643,0.00011822696,0.000040330113],"category_scores_gemma":[0.000049979204,0.000055832315,0.000052532727,0.00020878074,0.00013569328,0.000088068904,0.00003964727,0.00015096371,0.000004731883],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006775479,0.00025950893,0.10843904,0.000024392979,0.00002478985,9.2595974e-7,0.00014572828,0.000007143927,0.8809413,0.00018725,0.000014483109,0.009887696],"study_design_scores_gemma":[0.00039925138,0.0003837328,0.975536,0.00003225653,0.000014542438,0.000047706122,0.00013405795,0.000010460292,0.020348093,0.00054959906,0.0024124067,0.00013191019],"about_ca_topic_score_codex":0.0037280447,"about_ca_topic_score_gemma":0.00048011087,"teacher_disagreement_score":0.86709696,"about_ca_system_score_codex":0.0000120045515,"about_ca_system_score_gemma":0.0000053551275,"threshold_uncertainty_score":0.56357133},"labels":[],"label_agreement":null},{"id":"W2165732041","doi":"10.1128/iai.01066-08","title":"Interleukin-15 and NK1.1<sup>+</sup>Cells Provide Innate Protection against Acute<i>Salmonella enterica</i>Serovar Typhimurium Infection in the Gut and in Systemic Tissues","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Ontario Ministry of Research and Innovation; Canadian Institutes of Health Research","keywords":"Innate immune system; Biology; Salmonella enterica; Microbiology; Immune system; Population; Immunology; Interleukin 22; Immunity; Salmonella; Interleukin; Cytokine; Bacteria; Medicine","score_opus":0.014857318921854322,"score_gpt":0.22972880184823347,"score_spread":0.21487148292637914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165732041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961128,0.0010358333,0.00017253151,0.00013916225,0.00095439603,0.00080047053,0.0000027849194,0.00009393556,0.00068807666],"genre_scores_gemma":[0.9922431,0.0062581385,0.000006349494,0.0002784149,0.00003525153,0.00012363217,0.000046153524,0.00001936366,0.0009895663],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997906,0.0009170502,0.0004990136,0.00034203107,0.00005351799,0.0002823538],"domain_scores_gemma":[0.9993484,0.00010071927,0.0001900528,0.0002509002,0.000085442356,0.000024490442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058409426,0.00027828463,0.0003262029,0.0004526771,0.00045364277,0.0000694336,0.00007658962,0.0003068305,0.000051387215],"category_scores_gemma":[0.00007505359,0.00022966157,0.000063904816,0.0003676012,0.00025857156,0.0005920744,0.00010229666,0.0009701127,0.00006960263],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014160629,0.0007004139,0.08881751,0.00027193062,0.00024664283,0.000022795002,0.014111185,0.0001668923,0.87812185,0.000039443472,0.0015606207,0.01452466],"study_design_scores_gemma":[0.01203939,0.003552161,0.6524668,0.001225805,0.00024307615,0.010682976,0.006037712,0.002838602,0.17019069,0.00016278692,0.13879201,0.0017680229],"about_ca_topic_score_codex":0.005668698,"about_ca_topic_score_gemma":0.00043131667,"teacher_disagreement_score":0.70793116,"about_ca_system_score_codex":0.00011968462,"about_ca_system_score_gemma":0.00002901887,"threshold_uncertainty_score":0.9365327},"labels":[],"label_agreement":null},{"id":"W2165763387","doi":"10.1128/iai.72.12.6764-6772.2004","title":"Enteropathogenic <i>Escherichia coli</i> Infection Triggers Host Phospholipid Metabolism Perturbations","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Lipid Membrane Structure and Behavior","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada; State University of New York","keywords":"Biology; Phospholipid; Apoptosis; Phosphatidylserine; Enteropathogenic Escherichia coli; Phosphocholine; Phosphatidylcholine; Phosphatidylethanolamine; Microbiology; Bacterial outer membrane; Cell biology; Escherichia coli; Biochemistry; Membrane","score_opus":0.008416041881226573,"score_gpt":0.2360089099375966,"score_spread":0.22759286805637002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165763387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690425,0.00022352544,0.00067089277,0.00007179981,0.00088250637,0.00019207872,0.000015681038,0.000044279495,0.0009950078],"genre_scores_gemma":[0.99746394,0.0012372787,0.0000840682,0.00046307838,0.0002804305,0.000031351774,0.00010919485,0.000017832752,0.0003128204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99927187,0.000079785554,0.00017782903,0.00021737604,0.000079010046,0.00017410862],"domain_scores_gemma":[0.99950206,0.0000051081556,0.00007506909,0.00024702688,0.00008572242,0.00008500884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012790938,0.00016849798,0.00014042371,0.0000590319,0.00030011116,0.000048804224,0.000052848663,0.0001594353,0.000048203467],"category_scores_gemma":[0.000054613476,0.0001567017,0.00011487595,0.00015738868,0.00008586322,0.00001951551,0.000054287062,0.0001963009,0.000012321919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045042987,0.00013364354,0.0045836437,0.000010985228,0.000033385073,3.8301002e-7,0.0000904532,0.000021273192,0.99359435,0.000078140976,0.000059134272,0.0013495795],"study_design_scores_gemma":[0.0014186715,0.00019918832,0.2542886,0.00000849007,0.00007999267,0.000042432966,0.000018674267,0.0000023476916,0.6754638,0.000024887167,0.06825036,0.00020256739],"about_ca_topic_score_codex":0.0013158055,"about_ca_topic_score_gemma":0.00023654559,"teacher_disagreement_score":0.31813055,"about_ca_system_score_codex":0.000025278643,"about_ca_system_score_gemma":0.000065010594,"threshold_uncertainty_score":0.639011},"labels":[],"label_agreement":null},{"id":"W2165800956","doi":"10.1128/iai.00441-13","title":"Reconstitution of an Active Arginine Deiminase Pathway in Mycoplasma pneumoniae M129","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Centre for Applied Research in Cancer Control","keywords":"Arginine deiminase; Biology; Mycoplasma pneumoniae; Mollicutes; Microbiology; Mycoplasmataceae; Mycoplasma; Arginine; Ornithine; Citrulline; Biochemistry; Amino acid; Pneumonia","score_opus":0.015560934423155324,"score_gpt":0.2639237463039171,"score_spread":0.24836281188076176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165800956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996555,0.00016923505,0.00004533252,0.00003746096,0.00022423358,0.00028792492,0.000026512338,0.000036368605,0.00261796],"genre_scores_gemma":[0.99945444,0.00016928882,0.000011296497,0.000021831953,0.000009116958,0.000043597247,0.00008423271,0.0000056496456,0.00020054543],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906415,0.0003465784,0.00022457037,0.00015320026,0.000019373187,0.0001921062],"domain_scores_gemma":[0.9994973,0.00007464075,0.000073960706,0.00019032876,0.00012607324,0.000037684043],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002262259,0.0001078886,0.00017601256,0.00026072797,0.00019356256,0.000019491114,0.000048265945,0.00016236077,0.0013514538],"category_scores_gemma":[0.00010489107,0.00010061533,0.000043908363,0.00021868717,0.00026019636,0.0003871307,0.00005258345,0.00033048258,0.00017793315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009275616,0.0006250319,0.016225029,0.00002889208,0.000036860125,0.0000012388027,0.00028776034,0.000013368567,0.9241779,0.0004270632,0.000087768785,0.057996348],"study_design_scores_gemma":[0.0025060421,0.00077813567,0.2759419,0.000087095235,0.000018477711,0.0003482959,0.00065853714,0.00008562491,0.7129944,0.00064121094,0.0056389403,0.0003013614],"about_ca_topic_score_codex":0.010191233,"about_ca_topic_score_gemma":0.0009882323,"teacher_disagreement_score":0.25971687,"about_ca_system_score_codex":0.00004662833,"about_ca_system_score_gemma":0.00007983561,"threshold_uncertainty_score":0.9995614},"labels":[],"label_agreement":null},{"id":"W2166015022","doi":"10.1128/iai.00494-07","title":"Construction and Characterization of Single-Chain Variable Fragment Antibodies Directed against the <i>Bordetella pertussis</i> Surface Adhesins Filamentous Hemagglutinin and Pertactin","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Filamentous haemagglutinin adhesin; Bordetella pertussis; Biology; Biopanning; Pertactin; Phage display; Hemagglutinin (influenza); Molecular biology; Antibody; Peptide library; Microbiology; Virology; Peptide sequence; Pertussis toxin; Biochemistry; Gene; Genetics; G protein; Bacteria; Receptor","score_opus":0.011762863389553888,"score_gpt":0.22421417618547165,"score_spread":0.21245131279591778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166015022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975854,0.00047061595,0.00039026252,0.00008686,0.0006238732,0.00021276672,0.000024221865,0.00007474956,0.0005312206],"genre_scores_gemma":[0.9978918,0.001638783,0.00009091446,0.00005433467,0.000027054524,0.0000029881637,0.00008089452,0.000009807575,0.00020342896],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99912214,0.0002198744,0.00029476517,0.0001682023,0.000018586617,0.00017642544],"domain_scores_gemma":[0.99932647,0.00020131441,0.00019453511,0.00014151412,0.00011408069,0.000022093212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045126447,0.00015636042,0.0002218365,0.000082787396,0.0005737388,0.000046637135,0.000029956558,0.00016744403,0.00006746695],"category_scores_gemma":[0.000090111535,0.0001194358,0.00002737872,0.00016993083,0.00026418173,0.0001501113,0.00006549944,0.00019890726,0.0000018179514],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010512877,0.00011768673,0.033507112,0.000029360113,0.00007128126,1.0723009e-7,0.0005324701,9.1729424e-7,0.9511193,0.00015530674,0.000018990304,0.014342343],"study_design_scores_gemma":[0.0009947349,0.00030872494,0.51454616,0.00007576654,0.00006881922,0.0001622758,0.0006226486,0.00002969672,0.46273997,0.000029558458,0.02021612,0.00020554745],"about_ca_topic_score_codex":0.001081958,"about_ca_topic_score_gemma":0.000120080615,"teacher_disagreement_score":0.48837933,"about_ca_system_score_codex":0.000021407766,"about_ca_system_score_gemma":0.000016242067,"threshold_uncertainty_score":0.48704505},"labels":[],"label_agreement":null},{"id":"W2166353600","doi":"10.1128/iai.00565-09","title":"The Trehalose Synthesis Pathway Is an Integral Part of the Virulence Composite for <i>Cryptococcus gattii</i>","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Virulence; Cryptococcus gattii; Biology; Trehalose; Microbiology; Cryptococcus neoformans; Mutant; Cryptococcosis; Biochemistry; Gene","score_opus":0.028601872173605825,"score_gpt":0.2872352863112488,"score_spread":0.25863341413764296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166353600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962454,0.0002408966,0.00009627188,0.0011700667,0.00024602725,0.00038241473,0.000016711092,0.000043043594,0.0015592059],"genre_scores_gemma":[0.99871945,0.00047317054,0.00004140643,0.0005203805,0.00005435998,0.00003274737,0.0000011793533,0.00000599969,0.00015132953],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99942744,0.00010129857,0.00018293141,0.000094515075,0.00007565105,0.00011817342],"domain_scores_gemma":[0.99923015,0.00022753989,0.00007755762,0.00028467967,0.00014145329,0.000038608872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027242408,0.00009785067,0.00016346732,0.000024624896,0.0007861891,0.000026560265,0.00005119355,0.000048422677,0.000012511408],"category_scores_gemma":[0.00015742252,0.00005122087,0.000119315075,0.00014525853,0.0001716667,0.000077015044,0.00002364741,0.00017969361,0.0000021484288],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001064292,0.0021926868,0.31299067,0.00018099717,0.00039523965,0.000001063057,0.0033206602,0.000016934002,0.21792491,0.0055639823,0.0064215404,0.44992703],"study_design_scores_gemma":[0.00076530664,0.001413545,0.8053446,0.00019981006,0.00014696171,0.000036115238,0.00039912705,0.0003144474,0.13192302,0.0010114389,0.058299087,0.00014654583],"about_ca_topic_score_codex":0.00046567182,"about_ca_topic_score_gemma":0.0001117965,"teacher_disagreement_score":0.49235395,"about_ca_system_score_codex":0.000022665581,"about_ca_system_score_gemma":0.000022505832,"threshold_uncertainty_score":0.604681},"labels":[],"label_agreement":null},{"id":"W2166649449","doi":"10.1128/iai.74.5.2787-2802.2006","title":"Influence of Slc11a1 on the Outcome of<i>Salmonella enterica</i>Serovar Enteritidis Infection in Mice Is Associated with Th Polarization","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; McGill University; Montreal General Hospital","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Salmonella enterica; Microbiology; Immunology; Salmonella enteritidis; Gene; Salmonella; Genetics; Escherichia coli; Bacteria","score_opus":0.02100505394640935,"score_gpt":0.2886890496974792,"score_spread":0.2676839957510699,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166649449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987861,0.000020389938,0.00016216663,0.00033789396,0.000024534309,0.00023451257,0.000014421988,0.000017777971,0.0004022],"genre_scores_gemma":[0.9993374,0.00018837399,0.000016073665,0.00032505058,0.000011679481,0.00001132819,0.000034981334,0.000007737454,0.00006740584],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99887115,0.00035328654,0.00036295297,0.00011506364,0.00013314089,0.00016438919],"domain_scores_gemma":[0.99942446,0.00007233687,0.00018536077,0.00014248525,0.00014202861,0.00003332571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047612312,0.00010155313,0.00027501132,0.00015389003,0.00006718738,0.000007014164,0.00003599141,0.00007265544,0.0000221776],"category_scores_gemma":[0.00047266064,0.00007095353,0.000049722054,0.00031077972,0.00016117259,0.00010058972,0.000032512067,0.00028746252,0.0000020839698],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028020708,0.00028955884,0.9385553,0.000041918433,0.00002817086,0.0000016729293,0.000051468676,0.000099918834,0.060405165,0.00004567275,0.000041351053,0.0001595719],"study_design_scores_gemma":[0.0009408154,0.0011707026,0.99111724,0.00020839337,0.000015748743,0.000024353641,0.000015347314,0.00014271749,0.006186074,0.000046343823,0.00008636109,0.000045924844],"about_ca_topic_score_codex":0.020164445,"about_ca_topic_score_gemma":0.00079219934,"teacher_disagreement_score":0.05421909,"about_ca_system_score_codex":0.000058655347,"about_ca_system_score_gemma":0.000016216882,"threshold_uncertainty_score":0.9863604},"labels":[],"label_agreement":null},{"id":"W2166666225","doi":"10.1128/iai.70.12.7073-7080.2002","title":"Interleukin-18 and Gamma Interferon Production by Oral Epithelial Cells in Response to Exposure to<i>Candida albicans</i>or Lipopolysaccharide Stimulation","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Conseil Régional de l'Environnement du Bas-Saint-Laurent","funders":"","keywords":"Candida albicans; Biology; Lipopolysaccharide; Corpus albicans; Microbiology; Stimulation; Immune system; Chemokine; Cytokine; Immunology; Interferon gamma; Endocrinology","score_opus":0.013024436769403992,"score_gpt":0.2501184898816697,"score_spread":0.2370940531122657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166666225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984026,0.00012670028,0.0003831215,0.00033226825,0.00030052091,0.00032613406,0.000011286867,0.000016304912,0.00010105387],"genre_scores_gemma":[0.99759954,0.00026745483,0.000042910742,0.00032676934,0.00005263271,0.000033091186,0.000023190276,0.000015147058,0.0016392558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990545,0.00021440123,0.00022308345,0.00026319426,0.00006408262,0.00018073995],"domain_scores_gemma":[0.99959666,0.000015475767,0.000047597903,0.0002142693,0.000055569348,0.00007041403],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003240979,0.00015093392,0.00013287445,0.00014107235,0.000114370734,0.00004704849,0.000057602247,0.00011266098,0.00010227025],"category_scores_gemma":[0.00019157698,0.00014338957,0.000028431172,0.00013474858,0.000046085795,0.00002363695,0.00009063489,0.00014513455,0.000013765934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023741422,0.000091188784,0.0034115983,0.000010583958,0.000014850515,5.60689e-7,0.00076726265,0.00009554155,0.971459,9.502386e-7,0.0016265425,0.02014782],"study_design_scores_gemma":[0.0014014626,0.0036178774,0.03617533,0.000045086646,0.000014764556,0.000021214608,0.00036320006,0.00010648758,0.89426666,0.00001024781,0.06363678,0.00034087218],"about_ca_topic_score_codex":0.0006874511,"about_ca_topic_score_gemma":0.00076200516,"teacher_disagreement_score":0.07719228,"about_ca_system_score_codex":0.000030345684,"about_ca_system_score_gemma":0.0000136012695,"threshold_uncertainty_score":0.5847257},"labels":[],"label_agreement":null},{"id":"W2166790123","doi":"10.1128/iai.01029-08","title":"Role of NADPH Phagocyte Oxidase in Host Defense against Acute Respiratory <i>Acinetobacter baumannii</i> Infection in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Phagocyte; Acinetobacter baumannii; Biology; Microbiology; NADPH oxidase; Respiratory burst; Immunology; Respiratory system; Respiratory infection; Host (biology); Macrophage; Phagocytosis; Bacteria; Reactive oxygen species; Pseudomonas aeruginosa; Biochemistry","score_opus":0.011687000563666835,"score_gpt":0.23210541395747802,"score_spread":0.22041841339381119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166790123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964187,0.0012975684,0.000012714495,0.00001914605,0.00023253892,0.00024321921,0.00000572789,0.000045842084,0.0017245429],"genre_scores_gemma":[0.99714464,0.0024128102,0.0000043778687,0.00015816453,0.000013842663,0.000024728279,0.00005873741,0.000012784478,0.00016990953],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983849,0.00064760057,0.0005025106,0.0001850933,0.00003567127,0.00024421004],"domain_scores_gemma":[0.99938565,0.000100116325,0.00018392321,0.00022248561,0.00008953645,0.00001828284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004902154,0.00018050625,0.00029677866,0.00050638017,0.00019347665,0.000008552893,0.00006122335,0.00029114546,0.000056586396],"category_scores_gemma":[0.000111182715,0.0001840523,0.000073925265,0.00037447232,0.00020175127,0.00040445695,0.0000627045,0.0005251857,0.0000719292],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005310675,0.00019650575,0.13358086,0.000017114964,0.000046273097,0.00000530019,0.0009974955,0.00001372765,0.86185706,0.00003142719,0.00007454119,0.0026486097],"study_design_scores_gemma":[0.0016998909,0.00017114347,0.60746837,0.00004744244,0.000011752096,0.00005804171,0.00004908899,0.000008701842,0.3804419,0.000015521944,0.009896048,0.00013207165],"about_ca_topic_score_codex":0.0038918823,"about_ca_topic_score_gemma":0.0009800406,"teacher_disagreement_score":0.48141518,"about_ca_system_score_codex":0.000091260175,"about_ca_system_score_gemma":0.00007156653,"threshold_uncertainty_score":0.75054353},"labels":[],"label_agreement":null},{"id":"W2166817179","doi":"10.1128/iai.71.8.4516-4525.2003","title":"Characterization of the Novel Factor Paa Involved in the Early Steps of the Adhesion Mechanism of Attaching and Effacing <i>Escherichia coli</i>","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Vibrio cholerae; Escherichia coli; Microbiology; Transposon mutagenesis; Complementation; Mutant; Campylobacter jejuni; Gene; Transposable element; Virulence; Open reading frame; Molecular biology; Bacteria; Peptide sequence; Genetics","score_opus":0.019508965287657942,"score_gpt":0.25432855767846846,"score_spread":0.23481959239081052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166817179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99909264,0.00006225234,0.0003735596,0.000034266555,0.00005849741,0.00024479916,0.000009070979,0.0000014453252,0.00012345563],"genre_scores_gemma":[0.9995892,0.0003120488,0.000021785263,0.000044091492,0.0000060669395,0.000008247437,0.0000019023342,0.0000043443288,0.000012306468],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992065,0.00039095024,0.00015687197,0.00007615475,0.00009647846,0.000073080184],"domain_scores_gemma":[0.9995589,0.000038760147,0.00013882987,0.00019158707,0.00006188979,0.0000100058705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004216738,0.000068039524,0.00009731892,0.000018109833,0.00012998594,0.00000832598,0.00008223809,0.00005944706,0.0000010661412],"category_scores_gemma":[0.00025760112,0.00003816567,0.000038902606,0.00015037609,0.00010455076,0.000008141841,0.000111475085,0.00014675093,2.5906644e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014425536,0.00005238601,0.10405331,0.000038193542,0.000014939378,5.9761147e-9,0.0005444134,0.00000124294,0.894922,0.00021104247,4.5040255e-7,0.00014757024],"study_design_scores_gemma":[0.00019062066,0.00007377436,0.52707005,0.000023219296,0.0000050089516,3.3379285e-7,0.0001142466,0.00001834256,0.47233602,0.00002621364,0.00011662088,0.000025566962],"about_ca_topic_score_codex":0.00045304358,"about_ca_topic_score_gemma":0.00025790703,"teacher_disagreement_score":0.42301673,"about_ca_system_score_codex":0.000005655026,"about_ca_system_score_gemma":0.000028728879,"threshold_uncertainty_score":0.15563509},"labels":[],"label_agreement":null},{"id":"W2166825525","doi":"10.1128/iai.68.7.4344-4348.2000","title":"Mechanical Fractionation Reveals Structural Requirements for Enteropathogenic <i>Escherichia coli</i> Tir Insertion into Host Membranes","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Enteropathogenic Escherichia coli; Intimin; Escherichia coli; Lysis; Secretion; HeLa; Transmembrane protein; Microbiology; Cell membrane; Membrane; Cell fractionation; Bacterial outer membrane; Cell; Molecular biology; Enterobacteriaceae; Biochemistry; Receptor","score_opus":0.018195703763811705,"score_gpt":0.30462257609649107,"score_spread":0.2864268723326794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166825525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805546,0.0002788828,0.0005988858,0.00014383918,0.00015958947,0.00036705556,0.000010943939,0.000025202091,0.00036015076],"genre_scores_gemma":[0.99690866,0.0015746258,0.00037620243,0.00030188396,0.00013078032,0.0001101893,0.00012340792,0.000013685284,0.0004605538],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99914753,0.00017029526,0.00019062618,0.00021212705,0.000114620736,0.00016477884],"domain_scores_gemma":[0.9995411,0.00002325169,0.00006162749,0.00016885501,0.0001486537,0.000056507568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030455468,0.00012642646,0.000117854834,0.000035653346,0.00041526294,0.00004081707,0.00006405652,0.00011518298,0.00007119198],"category_scores_gemma":[0.00019207301,0.00012220026,0.00006634261,0.00009765706,0.0000607216,0.000026223157,0.00005710225,0.00012446233,0.0000057894636],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029330057,0.000050489605,0.00401645,0.000048823305,0.00005833388,1.3175342e-7,0.000050548173,0.000006397872,0.9885763,0.0000334499,0.00017454116,0.006691258],"study_design_scores_gemma":[0.0029701584,0.0017245007,0.49108282,0.00004765326,0.00007167741,0.00002088395,0.00011452889,0.0011948558,0.3944517,0.001141929,0.106641285,0.0005379916],"about_ca_topic_score_codex":0.00023795897,"about_ca_topic_score_gemma":0.00015698778,"teacher_disagreement_score":0.59412456,"about_ca_system_score_codex":0.000037111888,"about_ca_system_score_gemma":0.000028372238,"threshold_uncertainty_score":0.4983182},"labels":[],"label_agreement":null},{"id":"W2166959863","doi":"10.1128/iai.72.3.1637-1644.2004","title":"Blockade of Endogenous Leukotrienes Exacerbates Pulmonary Histoplasmosis","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Merck Canada; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Histoplasmosis; Leukotriene; Immunology; Leukotriene B4; Leukotriene C4; Cytokine; Biology; Histoplasma; Inflammation; Immune system; Tumor necrosis factor alpha; Blockade; Asthma; Receptor","score_opus":0.036026025966045754,"score_gpt":0.25328361249173015,"score_spread":0.2172575865256844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166959863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98286754,0.0013845423,0.00006285623,0.00017138997,0.00016776728,0.000115154275,0.0000031168433,0.000059919897,0.015167696],"genre_scores_gemma":[0.99784154,0.0017486264,0.00007495071,0.000040176776,0.000035326673,0.000011391356,0.0000049153473,0.000007027747,0.00023604652],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99955547,0.000023410443,0.00016509775,0.00008932328,0.00006764997,0.00009905132],"domain_scores_gemma":[0.9996338,0.000038340026,0.000051818584,0.00013496944,0.000097011136,0.000044100565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000094557196,0.000089049,0.0001958576,0.00010568989,0.00023123513,0.0000061229907,0.000015095288,0.000056458237,0.000045648732],"category_scores_gemma":[0.00007533556,0.0000759303,0.00006524527,0.0001783931,0.000120562756,0.000060756287,0.00003250929,0.00014361732,0.0000069673742],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001967579,0.0013068917,0.37325317,0.00031063525,0.00023953723,0.000020502983,0.0014032236,0.000107701795,0.6091214,0.000852678,0.00009236007,0.013095161],"study_design_scores_gemma":[0.0017726031,0.0012184652,0.60245675,0.00015194026,0.00020520578,0.0013627575,0.0005141522,0.000030575033,0.37700328,0.00065551605,0.0144135365,0.00021523755],"about_ca_topic_score_codex":0.0034791594,"about_ca_topic_score_gemma":0.000059294303,"teacher_disagreement_score":0.2321181,"about_ca_system_score_codex":0.000067616485,"about_ca_system_score_gemma":0.000037012862,"threshold_uncertainty_score":0.52594715},"labels":[],"label_agreement":null},{"id":"W2167092302","doi":"10.1128/iai.00269-10","title":"Delineation of Regions of the<i>Yersinia</i>YopM Protein Required for Interaction with the RSK1 and PRK2 Host Kinases and Their Requirement for Interleukin-10 Production and Virulence","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; McMaster University","keywords":"Biology; Virulence; Kinase; Yersinia; Bacterial protein; Microbiology; Host (biology); Protein-Serine-Threonine Kinases; Phosphorylation; Yersinia pseudotuberculosis; Cell biology; Virology; Protein kinase A; Genetics; Bacteria; Gene","score_opus":0.02084912044800057,"score_gpt":0.2875026381355828,"score_spread":0.2666535176875822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167092302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968923,0.00009100315,0.0014201102,0.00052863336,0.000076540324,0.0009512857,0.000019409566,0.0000042510965,0.000016496213],"genre_scores_gemma":[0.999406,0.00014379252,0.0001626139,0.000017973154,0.000044915378,0.000094134615,0.000021822074,0.0000076030615,0.0001011625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994893,0.00007584687,0.00013976841,0.0001631112,0.000047491325,0.000084453175],"domain_scores_gemma":[0.9993311,0.000048059137,0.00014738562,0.00019952416,0.00025088713,0.000023027873],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034173636,0.00008903818,0.00009471357,0.0000394819,0.00021185704,0.000025938298,0.00004445054,0.00006580434,0.0000013865571],"category_scores_gemma":[0.00034613514,0.000055097273,0.000024091532,0.000062550884,0.00031185514,0.000029377592,0.00006475241,0.00009998159,3.2096878e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006131416,0.0000481401,0.004435498,0.00010379436,0.000027335263,9.556464e-9,0.00025643368,0.0000011994046,0.9911214,0.000028023569,0.000066897155,0.0032980975],"study_design_scores_gemma":[0.0004945878,0.0010473898,0.03911381,0.00008626156,0.000023066777,0.000032231972,0.0003366967,0.00017601441,0.9543574,0.000036918296,0.004218614,0.00007702724],"about_ca_topic_score_codex":0.00016494787,"about_ca_topic_score_gemma":0.0008045112,"teacher_disagreement_score":0.036764048,"about_ca_system_score_codex":0.000007667094,"about_ca_system_score_gemma":0.000031031865,"threshold_uncertainty_score":0.22468016},"labels":[],"label_agreement":null},{"id":"W2167211278","doi":"10.1128/iai.00294-09","title":"Use of <i>Moraxella catarrhalis</i> Lipooligosaccharide Mutants To Identify Specific Oligosaccharide Epitopes Recognized by Human Serum Antibodies","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Cancer Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; National Institute on Deafness and Other Communication Disorders; U.S. Department of Veterans Affairs","keywords":"Immunogen; Moraxella catarrhalis; Epitope; Moraxella (Branhamella) catarrhalis; Antibody; Biology; Immunology; Microbiology; Antigen; Immune system; Virology; Monoclonal antibody; Haemophilus influenzae; Antibiotics","score_opus":0.054045513905797885,"score_gpt":0.3402586833365535,"score_spread":0.28621316943075564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167211278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972558,0.00019617584,0.00010502384,0.0008408166,0.0003914309,0.000415062,0.000108494154,0.00013108282,0.0005561247],"genre_scores_gemma":[0.9964119,0.0016109776,0.000055958622,0.0014058015,0.00010670561,0.0000088505985,0.000052438692,0.000017847045,0.00032948892],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99859864,0.00014532093,0.00049767725,0.00028293027,0.00019101478,0.00028444506],"domain_scores_gemma":[0.9988839,0.000068842644,0.00016141463,0.00042845513,0.00022938351,0.0002279907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002858462,0.00024031512,0.00046083017,0.0003240915,0.00046275381,0.00009196281,0.000072946015,0.00015356853,0.00014106471],"category_scores_gemma":[0.00015943077,0.00021981297,0.00013327776,0.00045070078,0.00011634098,0.0003534226,0.000055784756,0.0003738899,0.00004603806],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059009963,0.00034025716,0.0611419,0.000041305364,0.00006038906,0.000008360441,0.00029402954,0.0000031923469,0.92440236,0.000039778643,0.0048176176,0.008791811],"study_design_scores_gemma":[0.0007749691,0.0006079952,0.6545324,0.00017122434,0.00008964929,0.00014647281,0.00006836761,0.0000052463492,0.28761956,0.0001276178,0.055612657,0.00024387395],"about_ca_topic_score_codex":0.0015638769,"about_ca_topic_score_gemma":0.00011742372,"teacher_disagreement_score":0.6367828,"about_ca_system_score_codex":0.000051377192,"about_ca_system_score_gemma":0.000038607515,"threshold_uncertainty_score":0.8963713},"labels":[],"label_agreement":null},{"id":"W2167333965","doi":"10.1128/iai.00789-13","title":"Arginine Cools the Inflamed Gut","year":2013,"lang":"en","type":"letter","venue":"Infection and Immunity","topic":"Drug Transport and Resistance Mechanisms","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Arginine; Microbiology; Amino acid; Genetics","score_opus":0.01649974135810163,"score_gpt":0.24117062676121728,"score_spread":0.22467088540311564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167333965","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2188452,0.000854522,0.00042133528,0.7417962,0.0024064241,0.001676858,0.000019044797,0.0003253911,0.033655014],"genre_scores_gemma":[0.19177496,0.0023898855,0.00006186278,0.73401654,0.0036227624,0.00018811681,0.0008349058,0.000089645015,0.06702132],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991006,0.00008820735,0.00023499462,0.00016163473,0.00019744944,0.00021706498],"domain_scores_gemma":[0.9992145,0.000067359775,0.00011182091,0.00043675632,0.000120686964,0.0000489309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019139794,0.00022248305,0.00033350702,0.000099328485,0.0002445,0.000052123476,0.000071487855,0.00048243708,0.0008251324],"category_scores_gemma":[0.00003448238,0.0001323892,0.00012625,0.00012903308,0.00015572489,0.00006400179,0.000025177636,0.0021770077,0.00013795245],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004352302,0.000051004183,0.0018975125,0.00035357213,0.00019439784,0.00005601473,0.00022075349,4.7084848e-7,0.0017201325,0.00006717942,0.9906686,0.0047268453],"study_design_scores_gemma":[0.00057608826,0.0001064362,0.050578993,0.00015918454,0.00016485977,0.000084648986,0.00002478525,0.000010670303,0.00040873178,0.00016502246,0.94756573,0.0001548656],"about_ca_topic_score_codex":0.00067429186,"about_ca_topic_score_gemma":0.000040493353,"teacher_disagreement_score":0.04868148,"about_ca_system_score_codex":0.000032289143,"about_ca_system_score_gemma":0.000060817114,"threshold_uncertainty_score":0.94581366},"labels":[],"label_agreement":null},{"id":"W2167348853","doi":"10.1128/iai.74.4.2338-2352.2006","title":"The Host Defense Peptide Beta-Defensin 1 Confers Protection against<i>Bordetella pertussis</i>in Newborn Piglets","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; Krembil Foundation; Saskatchewan Health Research Foundation; Bill and Melinda Gates Foundation","keywords":"Bordetella pertussis; Innate immune system; Biology; Defensin; Beta defensin; Immunology; Immunity; Microbiology; Antimicrobial peptides; Bordetella bronchiseptica; Immune system; Whooping cough; Antimicrobial; Vaccination; Bacteria","score_opus":0.01150806868515105,"score_gpt":0.20980482972698072,"score_spread":0.19829676104182967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167348853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881158,0.0007229566,0.0002362811,0.0005334967,0.00052390853,0.0003488153,0.000011031191,0.000098791534,0.009408942],"genre_scores_gemma":[0.9962156,0.00070074183,0.000019979023,0.00020163906,0.000047990372,0.000022645721,0.00003948179,0.00001779087,0.0027341421],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987059,0.00039085394,0.00030596505,0.00021566938,0.000031745116,0.00034987173],"domain_scores_gemma":[0.99938387,0.00015314117,0.00013502632,0.00023409456,0.00007699736,0.000016895843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003663976,0.00021104269,0.00022676353,0.00011298568,0.0010043894,0.00009541074,0.00007720901,0.00021645341,0.000051649524],"category_scores_gemma":[0.000065006505,0.00016125085,0.00010367884,0.00016226515,0.0004410952,0.00017414347,0.00006952334,0.00057432277,0.00009143949],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031391505,0.00025999726,0.017790042,0.000028248987,0.00009560776,0.000004316287,0.00037729013,0.000063905354,0.93298244,0.001108926,0.0034984772,0.043476835],"study_design_scores_gemma":[0.0021447556,0.00031312613,0.45184636,0.000100612546,0.00005082243,0.00017716792,0.000849918,0.000050141178,0.12507409,0.0004340617,0.41842273,0.00053623115],"about_ca_topic_score_codex":0.011714972,"about_ca_topic_score_gemma":0.0045186994,"teacher_disagreement_score":0.80790836,"about_ca_system_score_codex":0.000060374943,"about_ca_system_score_gemma":0.00004245169,"threshold_uncertainty_score":0.99486613},"labels":[],"label_agreement":null},{"id":"W2167352194","doi":"10.1128/iai.00853-05","title":"Role of Host Protein Tyrosine Phosphatase SHP-1 in<i>Leishmania donovani</i>-Induced Inhibition of Nitric Oxide Production","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université Laval; McGill University Health Centre; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Biology; Nitric oxide; Leishmania donovani; Protein tyrosine phosphatase; Nitric oxide synthase; Cell biology; STAT1; Kinase; Molecular biology; Biochemistry; Phosphorylation; Immunology; Visceral leishmaniasis; Leishmaniasis","score_opus":0.01593499349436536,"score_gpt":0.264497733980434,"score_spread":0.24856274048606866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167352194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693656,0.00079799903,0.000010352938,0.00014218374,0.00003463555,0.0008445602,0.00000931242,0.00003773867,0.0011866332],"genre_scores_gemma":[0.99938214,0.00026987548,0.00009099596,0.000012861638,0.00005238375,0.000055785367,0.000034794313,0.00001381538,0.000087331464],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99882627,0.00012542824,0.00044027346,0.00018715777,0.00024165437,0.00017919863],"domain_scores_gemma":[0.99912035,0.000030681,0.00019386638,0.00025767754,0.0003575739,0.000039841045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000516353,0.00013468886,0.00032175274,0.00038913233,0.0000965138,0.00001081044,0.000029155077,0.00008470627,0.000022811535],"category_scores_gemma":[0.0003977815,0.00012589055,0.00005427033,0.00075149967,0.00013168462,0.00025391995,0.00006521919,0.0003033182,0.0000038815915],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026251824,0.0007343947,0.09802624,0.0002261233,0.000021525602,0.0000019857307,0.00006113128,0.000003298082,0.8972745,0.00027519176,0.00008921406,0.0030238978],"study_design_scores_gemma":[0.00073157466,0.00018357227,0.5143217,0.00013815367,0.00001381911,0.000012185849,0.00007828697,0.000010100446,0.48411644,0.00014678677,0.00019431677,0.00005306934],"about_ca_topic_score_codex":0.0152366385,"about_ca_topic_score_gemma":0.00056630844,"teacher_disagreement_score":0.41629544,"about_ca_system_score_codex":0.000098606346,"about_ca_system_score_gemma":0.000056616605,"threshold_uncertainty_score":0.99132097},"labels":[],"label_agreement":null},{"id":"W2167739536","doi":"10.1128/iai.01607-14","title":"Defects in Phosphate Acquisition and Storage Influence Virulence of Cryptococcus neoformans","year":2014,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Virulence; Biology; Cryptococcosis; Microbiology; Mutant; Polyphosphate; Biochemistry; Phosphate; Gene","score_opus":0.009377202045121115,"score_gpt":0.25719542610886464,"score_spread":0.24781822406374354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167739536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731076,0.00021209574,0.00034982723,0.00003181391,0.000071408926,0.00015969305,0.0000012654629,0.000025954012,0.0018371647],"genre_scores_gemma":[0.9991078,0.0006753367,0.00003509109,0.0001252002,0.000013289035,0.000014007381,0.0000021170326,0.000003914236,0.000023245142],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99955314,0.000056927678,0.00015130939,0.0000869543,0.0000549883,0.00009667535],"domain_scores_gemma":[0.9996656,0.00006238269,0.000053287265,0.00010698121,0.000073333016,0.000038393257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025970652,0.00007652032,0.00016200748,0.00011234991,0.00012666998,0.000010569946,0.000012303094,0.000050069444,0.000017824766],"category_scores_gemma":[0.00011092723,0.0000672143,0.000022425107,0.00016661035,0.00010974656,0.00016664612,0.000036586378,0.00015432002,0.0000038011447],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008948831,0.00013709307,0.9643696,0.00020114453,0.000017560209,0.000001036861,0.00058241026,0.00008459994,0.026592081,0.0008488237,0.000020526826,0.0070556276],"study_design_scores_gemma":[0.00071888056,0.00045385238,0.9922404,0.00012444932,0.000017813576,0.000020635001,0.000043678763,0.0006216252,0.004774799,0.00020649724,0.00071414356,0.00006319961],"about_ca_topic_score_codex":0.0016493234,"about_ca_topic_score_gemma":0.000121872756,"teacher_disagreement_score":0.027870819,"about_ca_system_score_codex":0.000022879589,"about_ca_system_score_gemma":0.000009765471,"threshold_uncertainty_score":0.27409196},"labels":[],"label_agreement":null},{"id":"W2167771489","doi":"10.1128/iai.05249-11","title":"PPE38 Modulates the Innate Immune Response and Is Required for Mycobacterium marinum Virulence","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Mycobacterium marinum; Biology; Virulence; Innate immune system; Microbiology; Zebrafish; Immune system; Phagocytosis; Proinflammatory cytokine; Mycobacterium; Mutant; Immunology; Inflammation; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.047036573290803775,"score_gpt":0.29693605485315916,"score_spread":0.2498994815623554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167771489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997242,0.0003205234,0.00008533116,0.0011098841,0.00014532784,0.0004734078,0.000020067564,0.00004395857,0.000559547],"genre_scores_gemma":[0.9967097,0.0019362693,0.0001072521,0.0005062963,0.000044842738,0.00008740736,0.0000123581585,0.000013588794,0.0005822578],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999138,0.00019575653,0.00018589514,0.00016300532,0.00009391055,0.00022345618],"domain_scores_gemma":[0.9990996,0.00023563963,0.000059541762,0.00033847845,0.00014856065,0.00011818771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008577288,0.00012272884,0.00017111149,0.000093856615,0.0003189787,0.000051325576,0.000056083187,0.00008532917,0.00019628511],"category_scores_gemma":[0.00066020497,0.00008585284,0.000059214643,0.00013189444,0.00018724249,0.0001554176,0.00012874442,0.00020499605,0.000013034997],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016928144,0.000459763,0.3817774,0.00035739865,0.00023824388,0.000008955139,0.004055569,8.474625e-8,0.56879526,0.00023293142,0.0023420842,0.024804194],"study_design_scores_gemma":[0.0010072159,0.00089855574,0.9358075,0.00005591238,0.00003683611,0.00006169301,0.000093240385,0.00008767626,0.053036295,0.00042920327,0.008391197,0.00009461902],"about_ca_topic_score_codex":0.0019377951,"about_ca_topic_score_gemma":0.000019943905,"teacher_disagreement_score":0.5540302,"about_ca_system_score_codex":0.000022797713,"about_ca_system_score_gemma":0.000041849165,"threshold_uncertainty_score":0.35009772},"labels":[],"label_agreement":null},{"id":"W2167952434","doi":"10.1128/iai.00005-10","title":"Fine-Tuning Synthesis of<i>Yersinia pestis</i>LcrV from Runaway-Like Replication Balanced-Lethal Plasmid in a<i>Salmonella enterica</i>Serovar Typhimurium Vaccine Induces Protection against a Lethal<i>Y. pestis</i>Challenge in Mice","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Petroleum Technology Research Centre","keywords":"Biology; Plasmid; Yersinia pestis; Virology; Salmonella enterica; Microbiology; Salmonella; Virulence; Molecular biology; Gene; Genetics; Bacteria","score_opus":0.014081009555768685,"score_gpt":0.26228185161995515,"score_spread":0.24820084206418647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167952434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796355,0.00016931759,0.0001444235,0.0002198752,0.00029510193,0.00046618722,0.00003380404,0.000030735355,0.0006770182],"genre_scores_gemma":[0.99871635,0.0005016606,0.00028392294,0.00004292172,0.00011383385,0.00011246464,0.00017382941,0.00003105401,0.000023955086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99810165,0.00036795577,0.00047011385,0.0005706559,0.00016963428,0.0003199611],"domain_scores_gemma":[0.9987921,0.00013468681,0.00024050487,0.0005895262,0.00014687568,0.00009631641],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006595515,0.00025766192,0.0003341576,0.00028653708,0.00012801816,0.00004223069,0.00020211928,0.00039646987,0.000028820512],"category_scores_gemma":[0.000684474,0.0002837218,0.00007135906,0.00038755065,0.00010502638,0.000045098994,0.00017767602,0.0008279986,0.0000069298717],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028838,0.00027551234,0.102121904,0.00005623368,0.00002757959,0.000005201417,0.00017545577,0.00003975082,0.8910726,0.0000026232144,0.000036830093,0.0058979676],"study_design_scores_gemma":[0.0009251802,0.00022159105,0.52486175,0.0001031625,0.000013128646,0.00003511732,0.000060729235,0.0005170966,0.47156277,0.000020514986,0.0014281041,0.000250869],"about_ca_topic_score_codex":0.0046090833,"about_ca_topic_score_gemma":0.00391495,"teacher_disagreement_score":0.42273983,"about_ca_system_score_codex":0.00005432565,"about_ca_system_score_gemma":0.00008828754,"threshold_uncertainty_score":0.9999615},"labels":[],"label_agreement":null},{"id":"W2167996482","doi":"10.1128/iai.00895-08","title":"Pertussis Toxin Inhibits Early Chemokine Production To Delay Neutrophil Recruitment in Response to<i>Bordetella pertussis</i>Respiratory Tract Infection in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Simon Fraser University","keywords":"Bordetella pertussis; Pertussis toxin; Biology; Microbiology; Chemokine; Respiratory tract; Immunology; Whooping cough; Respiratory tract infections; Respiratory system; Virology; Bacteria; Inflammation; G protein; Vaccination; Receptor","score_opus":0.044344293017642554,"score_gpt":0.2822678428399351,"score_spread":0.23792354982229255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167996482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615353,0.00027756332,0.000026057558,0.0008350173,0.0014295226,0.0010175814,0.0000065897266,0.000116267176,0.00013786672],"genre_scores_gemma":[0.99808115,0.0006686233,0.000017048287,0.00036994796,0.000095720774,0.00027676162,0.000016873339,0.000026826187,0.0004470502],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99762106,0.0009401791,0.00054690737,0.0004660106,0.00003774277,0.00038811605],"domain_scores_gemma":[0.99923766,0.0001231818,0.000112518144,0.00031566602,0.00013663448,0.00007432464],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00089651055,0.00029581905,0.00037384976,0.0009538822,0.00044298457,0.00003494553,0.00007179505,0.00032647164,0.00015039188],"category_scores_gemma":[0.00050811673,0.00028715533,0.00008284304,0.0010692949,0.000074185315,0.00036677107,0.00009973272,0.0006168796,0.00014495495],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014580169,0.0007274044,0.18877043,0.000013177051,0.000023357286,0.0000026878458,0.0015753588,0.000099888166,0.7991766,0.000004066969,0.0002819608,0.007867075],"study_design_scores_gemma":[0.0013012887,0.00095761265,0.8168758,0.00006931981,0.000012403768,0.00018187858,0.00003095664,0.0000018329836,0.1252564,0.0000070420483,0.055034414,0.00027105815],"about_ca_topic_score_codex":0.010353915,"about_ca_topic_score_gemma":0.003145031,"teacher_disagreement_score":0.67392015,"about_ca_system_score_codex":0.0002774758,"about_ca_system_score_gemma":0.00007759897,"threshold_uncertainty_score":0.99995804},"labels":[],"label_agreement":null},{"id":"W2168219552","doi":"10.1128/iai.00645-08","title":"Prostaglandin E<sub>2</sub>Produced by<i>Entamoeba histolytica</i>Binds to EP4 Receptors and Stimulates Interleukin-8 Production in Human Colonic Cells","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Ono Pharmaceutical; Canadian Association of Gastroenterology; University of Calgary","keywords":"Entamoeba histolytica; Biology; Proinflammatory cytokine; Receptor; Prostaglandin E; Chemokine; Interleukin 8; Prostaglandin E2; Mucin; Prostaglandin E2 receptor; Microbiology; Inflammation; Immunology; Endocrinology; Biochemistry; Agonist","score_opus":0.014133163644504702,"score_gpt":0.2581786309421706,"score_spread":0.24404546729766588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168219552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977976,0.00010874925,0.000018432482,0.00045136316,0.0004633153,0.0008380065,0.0000045168517,0.000089012,0.00022898795],"genre_scores_gemma":[0.9986836,0.0003521952,0.000024390145,0.000092998765,0.00006158941,0.00007243715,0.00004110453,0.000022286282,0.0006494214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989584,0.00010227025,0.00024409244,0.00034537454,0.000115720315,0.00023411443],"domain_scores_gemma":[0.99941283,0.000028987415,0.00007965483,0.00024511598,0.00009514403,0.0001382742],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022245025,0.00020576183,0.0002852666,0.00030249174,0.00044754325,0.00002776971,0.000024932906,0.00011380389,0.00002613408],"category_scores_gemma":[0.00010530531,0.00018860507,0.0000436956,0.00037066644,0.0001518777,0.00018618026,0.000052457992,0.00033191917,0.000016947914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020662832,0.00086130894,0.39311296,0.0000653975,0.00007201019,0.000011352329,0.0011982333,0.0000076168017,0.59791064,0.000013165319,0.002902758,0.0036379416],"study_design_scores_gemma":[0.0024952446,0.0017050607,0.33488476,0.00012739783,0.00007683813,0.00027548897,0.000103302045,0.00003179852,0.65648764,0.000029225299,0.003524092,0.00025911615],"about_ca_topic_score_codex":0.00097151037,"about_ca_topic_score_gemma":0.000183479,"teacher_disagreement_score":0.058577046,"about_ca_system_score_codex":0.000334565,"about_ca_system_score_gemma":0.00004400422,"threshold_uncertainty_score":0.7691092},"labels":[],"label_agreement":null},{"id":"W2168593917","doi":"10.1128/iai.00117-11","title":"Staphylococcus aureus Transporters Hts, Sir, and Sst Capture Iron Liberated from Human Transferrin by Staphyloferrin A, Staphyloferrin B, and Catecholamine Stress Hormones, Respectively, and Contribute to Virulence","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Siderophore; Transferrin; Staphylococcus aureus; Biology; Virulence; Microbiology; Enterobactin; Transporter; Bacteria; Biochemistry; Gene","score_opus":0.017404520503039294,"score_gpt":0.24934474658026887,"score_spread":0.23194022607722958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168593917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928296,0.002739032,0.0009880555,0.00020147362,0.00009580184,0.0012084035,0.001352094,0.00017227093,0.00041324666],"genre_scores_gemma":[0.9967489,0.002221338,0.00018436107,0.0003065433,0.000041258998,0.000052748535,0.0001973798,0.00006209778,0.00018537512],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975976,0.00022233093,0.000589456,0.00078840303,0.0002668168,0.000535446],"domain_scores_gemma":[0.99852675,0.00010423215,0.00015205362,0.0004547433,0.00021701338,0.0005451892],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003508933,0.0005717814,0.00075360143,0.00031432157,0.0005543434,0.00012645473,0.000116206305,0.00036927525,0.00007791887],"category_scores_gemma":[0.00006386359,0.00054917304,0.00007513409,0.00038384597,0.00060462754,0.00036380917,0.00008611229,0.00089059235,0.0000021615965],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00221834,0.00052089145,0.21778487,0.00023991981,0.00024247123,0.00006846755,0.0066228975,0.0000011536908,0.76707464,0.00014716282,0.0004484261,0.0046307496],"study_design_scores_gemma":[0.0039809304,0.00113379,0.92496854,0.00029293503,0.00023096499,0.00001887193,0.0010952496,0.000015814245,0.065661885,0.00020113579,0.0017845096,0.00061538763],"about_ca_topic_score_codex":0.031867597,"about_ca_topic_score_gemma":0.006361456,"teacher_disagreement_score":0.70718366,"about_ca_system_score_codex":0.00012128539,"about_ca_system_score_gemma":0.000059506812,"threshold_uncertainty_score":0.99969596},"labels":[],"label_agreement":null},{"id":"W2168630440","doi":"10.1128/iai.69.4.1994-2000.2001","title":"<i>Streptococcus iniae</i>Virulence Is Associated with a Distinct Genetic Profile","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"Bộ Giáo dục và Ðào tạo","keywords":"Biology; Microbiology; Streptococcus iniae; Virulence; Pathogen; Pulsed-field gel electrophoresis; Bacteremia; Virology; clone (Java method); Immunology; Immune system; Gene; Genotype; Genetics","score_opus":0.02102761572018533,"score_gpt":0.278463276479161,"score_spread":0.25743566075897567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168630440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860638,0.00006220795,0.00016032887,0.000077900295,0.000067403875,0.00051625766,0.000012093608,0.00013852639,0.012901505],"genre_scores_gemma":[0.99819034,0.00014760818,0.00005127949,0.00017979796,0.000031564807,0.00013145513,0.000037137874,0.000014019376,0.001216783],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993051,0.000057104622,0.00016075328,0.00018736749,0.00010902292,0.00018062432],"domain_scores_gemma":[0.99940777,0.0000495034,0.00007772352,0.00023074073,0.00012162138,0.00011265149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006676386,0.00015114703,0.00019129583,0.00007934869,0.00027494077,0.00003396434,0.000021587517,0.00008240006,0.0008500467],"category_scores_gemma":[0.000084299376,0.00011336475,0.000052356438,0.00036454748,0.0001094667,0.00009299068,0.00002723032,0.00021200594,0.00006162878],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006652807,0.00051313895,0.9833163,0.000011278716,0.00012755893,0.000025120898,0.000082803446,6.44632e-7,0.00033077764,0.0000045346883,0.00018834489,0.015332952],"study_design_scores_gemma":[0.0017997393,0.0009076881,0.9917006,0.00010800918,0.00012376408,0.00025390415,0.000020928812,0.00011351809,0.0010902651,0.00004015079,0.003719163,0.00012225592],"about_ca_topic_score_codex":0.0012130402,"about_ca_topic_score_gemma":0.00016663563,"teacher_disagreement_score":0.0152106965,"about_ca_system_score_codex":0.00007679784,"about_ca_system_score_gemma":0.00004396623,"threshold_uncertainty_score":0.93074155},"labels":[],"label_agreement":null},{"id":"W2168747740","doi":"10.1128/iai.71.10.6104-6108.2003","title":"Identification of an Inducible Bacteriophage in a Virulent Strain of <i>Streptococcus suis</i> Serotype 2","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Virulence; Biology; Streptococcus suis; Microbiology; Siphoviridae; Virology; Serotype; Bacteriophage; Pathogen; Genetics; Escherichia coli; Gene","score_opus":0.02164640255832967,"score_gpt":0.3065435307193166,"score_spread":0.28489712816098695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168747740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979877,0.000037274996,0.000041684652,0.0000067573806,0.000083597166,0.00040166997,0.0000150104315,0.00001671177,0.001409582],"genre_scores_gemma":[0.9997504,0.00006150612,0.000033530745,0.000010289576,0.000006198292,0.00003516285,0.00002482387,0.0000065607587,0.000071566516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992701,0.00012183789,0.00033000854,0.00012148632,0.00006959491,0.00008700399],"domain_scores_gemma":[0.9994598,0.000022785693,0.0001327598,0.00024500024,0.0000889249,0.000050721123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027217905,0.000084327374,0.00018725687,0.00017546154,0.000044326363,0.000008336416,0.000017360755,0.00007463938,0.00015720798],"category_scores_gemma":[0.000087184926,0.000078083314,0.00004384925,0.00030276875,0.00006180598,0.00014151807,0.000009807681,0.0001267703,0.0000035596083],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003780643,0.0009822518,0.6843086,0.000058149617,0.00003121464,0.0000012918151,0.00015590964,0.0000057955517,0.30853134,0.00020031116,0.0000016160701,0.0056857024],"study_design_scores_gemma":[0.0009971923,0.0003668348,0.7330037,0.000037407604,0.000025054629,0.000013525286,0.0000722171,0.000019854786,0.2651943,0.00011583066,0.000113344955,0.00004075542],"about_ca_topic_score_codex":0.001338966,"about_ca_topic_score_gemma":0.00016329401,"teacher_disagreement_score":0.048695087,"about_ca_system_score_codex":0.00003832722,"about_ca_system_score_gemma":0.000043762822,"threshold_uncertainty_score":0.3184145},"labels":[],"label_agreement":null},{"id":"W2168843636","doi":"10.1128/iai.74.3.1809-1818.2006","title":"Conditioned Medium from Enterohemorrhagic<i>Escherichia coli</i>-Infected T84 Cells Inhibits Signal Transducer and Activator of Transcription 1 Activation by Gamma Interferon","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University; SickKids Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; University of Toronto","keywords":"Biology; STAT protein; Tyrosine phosphorylation; STAT1; Signal transduction; Microbiology; Phosphorylation; Protein tyrosine phosphatase; Flagellin; Tyrosine; Interferon; Molecular biology; Cell biology; Receptor; Biochemistry; STAT3; Virology","score_opus":0.007669151584980651,"score_gpt":0.22717088060124527,"score_spread":0.2195017290162646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168843636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948883,0.00022113758,0.004068343,0.00011022774,0.00009111427,0.0002632267,0.00009451787,0.000024283883,0.00023885163],"genre_scores_gemma":[0.99871963,0.0004411866,0.00007111747,0.000079796555,0.00008223263,0.000035628214,0.0004660384,0.000016157612,0.00008819971],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900484,0.00022122823,0.00024387053,0.00023599374,0.00012930323,0.0001647652],"domain_scores_gemma":[0.9995221,0.00004130831,0.000110753026,0.00012897897,0.00013946879,0.00005740046],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001430522,0.00017637279,0.00019066711,0.000056604622,0.00015695207,0.00003283683,0.00004750804,0.0001630594,0.00006261655],"category_scores_gemma":[0.0000285853,0.00017493797,0.000053109437,0.00012048108,0.00017929383,0.000034664714,0.00004032197,0.00020696507,9.706418e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003467446,0.00022074222,0.0038562673,0.00004474627,0.000072655035,1.364727e-7,0.00013515643,0.0000036354468,0.9939642,0.0000049857313,0.0007506778,0.0006000727],"study_design_scores_gemma":[0.0011854419,0.0004871214,0.0841963,0.000030515685,0.000026393494,0.0000012100049,0.0000674409,0.00005783495,0.9114424,0.000044677414,0.0023136323,0.00014702539],"about_ca_topic_score_codex":0.002020484,"about_ca_topic_score_gemma":0.0002205876,"teacher_disagreement_score":0.082521774,"about_ca_system_score_codex":0.000024914834,"about_ca_system_score_gemma":0.000032858436,"threshold_uncertainty_score":0.71337634},"labels":[],"label_agreement":null},{"id":"W2168968739","doi":"10.1128/iai.01317-12","title":"Exacerbated Type II Interferon Response Drives Hypervirulence and Toxic Shock by an Emergent Epidemic Strain of Streptococcus suis","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Biology; Virulence; Proinflammatory cytokine; Microbiology; Streptococcus suis; Pathogen; Virology; Strain (injury); Interferon; Outbreak; Immunology; Gene; Inflammation; Genetics","score_opus":0.026419060476678552,"score_gpt":0.3058965747155108,"score_spread":0.27947751423883227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168968739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985591,0.0002711989,0.000045679008,0.00012091934,0.000112101094,0.0005364817,0.000020130754,0.000059961832,0.0002744238],"genre_scores_gemma":[0.99881434,0.0005569883,0.000040296803,0.000050795614,0.000013872851,0.000047942525,0.000043219276,0.000011590267,0.00042093743],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99908924,0.0002370646,0.00026553337,0.00018911524,0.00007112344,0.0001479374],"domain_scores_gemma":[0.9992891,0.00008089928,0.00008894092,0.00025292725,0.00013943751,0.00014871103],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020766474,0.00014976435,0.00023205839,0.000114052855,0.00018967006,0.0000170519,0.000028734703,0.00010074278,0.0011344543],"category_scores_gemma":[0.0001630097,0.00012467681,0.000040078456,0.00018999269,0.0001298085,0.00021513447,0.00006154276,0.00018776195,0.000013446098],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037823658,0.00062195054,0.5178193,0.00003473532,0.00010697735,8.255912e-7,0.00038638504,0.0000026326059,0.4510313,0.000011364623,0.0003267759,0.029279554],"study_design_scores_gemma":[0.0010613478,0.0039613196,0.97129667,0.000074525815,0.000060209757,0.000025058634,0.00024562684,0.00036039558,0.022003347,0.0000654539,0.00073107064,0.000114960305],"about_ca_topic_score_codex":0.0034896426,"about_ca_topic_score_gemma":0.00006645297,"teacher_disagreement_score":0.4534774,"about_ca_system_score_codex":0.0000471271,"about_ca_system_score_gemma":0.000027955706,"threshold_uncertainty_score":0.9997786},"labels":[],"label_agreement":null},{"id":"W2169104034","doi":"10.1128/iai.00718-12","title":"Involvement of Signal Regulatory Protein α, a Negative Regulator of Toll-Like Receptor Signaling, in Impairing the MyD88-Independent Pathway and Intracellular Killing of Burkholderia pseudomallei-Infected Mouse Macrophages","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Thailand Research Fund; University of Calgary","keywords":"Burkholderia pseudomallei; Biology; Downregulation and upregulation; Signal transduction; Intracellular parasite; Intracellular; Innate immune system; Microbiology; Cell biology; Toll-like receptor; Melioidosis; Immune system; Immunology; Gene; Bacteria; Biochemistry","score_opus":0.01642196573073921,"score_gpt":0.23716462360881027,"score_spread":0.22074265787807107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169104034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751025,0.000923071,0.00030637276,0.00003264847,0.00015490098,0.0009797973,0.0000106690995,0.000031090127,0.000051168394],"genre_scores_gemma":[0.9991383,0.00024868897,0.00036536518,0.000016926484,0.00006218643,0.00006746558,0.000008727996,0.000023675098,0.000068644345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982838,0.00034591556,0.0006843245,0.00018457093,0.00024811042,0.00025329518],"domain_scores_gemma":[0.9987461,0.000118870645,0.00044723772,0.00032899142,0.00024083449,0.00011794975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013250421,0.00021854493,0.0004954592,0.0002971156,0.00014067593,0.000013280478,0.000054854838,0.00017500528,0.00014572732],"category_scores_gemma":[0.00009797784,0.00017112146,0.00011530298,0.00037536392,0.00029713128,0.00020890422,0.0001048598,0.00037254285,6.7218986e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002200891,0.00063697965,0.08517118,0.00041684433,0.0001630441,6.3618154e-7,0.0023833108,0.00003406105,0.9088267,0.00016741252,0.000008320264,0.0019714052],"study_design_scores_gemma":[0.0017927911,0.0005708393,0.15413463,0.000428377,0.00008889693,0.000021008342,0.0010310437,0.00015228607,0.84150475,0.00003300037,0.000108895016,0.0001334916],"about_ca_topic_score_codex":0.0023684124,"about_ca_topic_score_gemma":0.00006875493,"teacher_disagreement_score":0.06896345,"about_ca_system_score_codex":0.00008363819,"about_ca_system_score_gemma":0.00008404097,"threshold_uncertainty_score":0.69781303},"labels":[],"label_agreement":null},{"id":"W2169129136","doi":"10.1128/iai.70.9.4897-4901.2002","title":"Protection from Group B Streptococcal Infection in Neonatal Mice by Maternal Immunization with Recombinant Sip Protein","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Recombinant DNA; Group B; Immunization; Group A; Streptococcus agalactiae; Streptococcus; Immunology; Neonatal infection; Microbiology; Streptococcus pyogenes; Virology; Antibody; Pregnancy; Bacteria; Internal medicine; Medicine; Genetics; Gene","score_opus":0.013599918851220664,"score_gpt":0.22043899723915353,"score_spread":0.20683907838793286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169129136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946696,0.00012526027,0.00315968,0.00016730327,0.00024325313,0.0010026336,0.000013493511,0.00016846997,0.00045031047],"genre_scores_gemma":[0.9983577,0.0003218145,0.000079964404,0.000049721693,0.00006096222,0.00021785458,0.0001049265,0.000025026695,0.000782001],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99895734,0.0001476804,0.0002932544,0.0002491689,0.00015186914,0.00020070813],"domain_scores_gemma":[0.99950176,0.00001847263,0.00012703703,0.00017504774,0.0000868615,0.00009079258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001428315,0.00020235698,0.00021954684,0.00020455482,0.00024407642,0.00007040338,0.000031487303,0.00015046963,0.00046753],"category_scores_gemma":[0.000036379093,0.00017237282,0.000046379537,0.00035440296,0.000081007034,0.0004894157,0.000043669945,0.00054585707,0.000046477177],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009706699,0.0013735703,0.58869964,0.00023744977,0.00014620654,0.000028704437,0.00064499537,0.00002879233,0.2959726,0.00016567274,0.00017356407,0.111558184],"study_design_scores_gemma":[0.0040302,0.0018231315,0.9121352,0.00051850366,0.00005869228,0.00045739303,0.000048009955,0.00197701,0.06788312,0.0003013451,0.010408184,0.0003592062],"about_ca_topic_score_codex":0.06345158,"about_ca_topic_score_gemma":0.0023570927,"teacher_disagreement_score":0.32343557,"about_ca_system_score_codex":0.00015631286,"about_ca_system_score_gemma":0.000011398328,"threshold_uncertainty_score":0.94278497},"labels":[],"label_agreement":null},{"id":"W2169138904","doi":"10.1128/iai.68.2.564-569.2000","title":"Isolation, Affinity Purification, and Identification of Piglet Small Intestine Mucosa Receptor for Enterotoxigenic <i>Escherichia coli</i> K88ac+ Fimbriae","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Fimbria; Enterotoxigenic Escherichia coli; Biology; Escherichia coli; Affinity chromatography; Receptor; Mucus; Gel electrophoresis; Microbiology; Sepharose; Chromatography; Biochemistry; Molecular biology; Agarose; Intestinal mucosa; Enterotoxin; Chemistry; Enzyme","score_opus":0.016213938311996485,"score_gpt":0.26546937313512853,"score_spread":0.24925543482313203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169138904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99479157,0.00038452537,0.0038048793,0.0001587455,0.000066154906,0.00052246475,0.000038184175,0.000018743005,0.00021474205],"genre_scores_gemma":[0.9958171,0.0021728026,0.0009608718,0.000080243604,0.000059892027,0.00015538975,0.0001496568,0.000012127829,0.0005918783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999157,0.00014974682,0.00029101738,0.00020907061,0.00006129168,0.0001318639],"domain_scores_gemma":[0.9992408,0.00005115101,0.00012440664,0.0002360828,0.000295635,0.00005190573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004730861,0.0001151131,0.00013020389,0.000041137242,0.00024150059,0.00003608295,0.00007095552,0.00009028173,0.00003421437],"category_scores_gemma":[0.0005025457,0.000118375334,0.00004492449,0.00013223644,0.00015077589,0.000013501321,0.000053963337,0.00010323831,0.0000029389862],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017580729,0.00013015699,0.02113927,0.00006822364,0.000049995295,1.721275e-8,0.000121424746,0.0000059780054,0.9733633,0.00003801732,0.00047857632,0.0044292747],"study_design_scores_gemma":[0.0012384721,0.00069873733,0.47324747,0.000027599628,0.000037509322,0.000004977375,0.00009278237,0.0004750574,0.4765371,0.00017481357,0.04722196,0.00024350054],"about_ca_topic_score_codex":0.00017880314,"about_ca_topic_score_gemma":0.0001323283,"teacher_disagreement_score":0.49682614,"about_ca_system_score_codex":0.00001247332,"about_ca_system_score_gemma":0.0000390072,"threshold_uncertainty_score":0.4827206},"labels":[],"label_agreement":null},{"id":"W2169386966","doi":"10.1128/iai.01073-08","title":"The Cytoplasmic Domain of Anthrax Toxin Receptor 1 Affects Binding of the Protective Antigen","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Anthrax toxin; Biology; Cell biology; Cytoplasm; Cytoskeleton; Cell; Biochemistry; Gene","score_opus":0.012914554078816429,"score_gpt":0.24599977545914917,"score_spread":0.23308522138033275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169386966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986009,0.00015843098,0.00011680162,0.000042523687,0.00017503527,0.00024826196,0.0000114164795,0.0000028163015,0.00064380496],"genre_scores_gemma":[0.99847317,0.0013390356,0.000015872332,0.0000064480073,0.00003572053,0.000010113409,0.0000040173427,0.000005245214,0.00011035322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994177,0.00020896168,0.000104270934,0.00008368055,0.00007881948,0.000106525426],"domain_scores_gemma":[0.99958646,0.000031335112,0.000083468374,0.00020921444,0.00006848255,0.000021025618],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003323883,0.000062535284,0.00008480359,0.0000194566,0.00039330224,0.000007081504,0.000088096625,0.00007567445,0.000010405868],"category_scores_gemma":[0.00015695121,0.00003736425,0.000057727593,0.000118073556,0.00033280955,0.0000036604429,0.00010380928,0.00011537303,0.0000011936231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010516003,0.000031966476,0.01629055,0.000012750027,0.000024681653,6.132894e-8,0.000114974864,0.0000011029274,0.98112196,0.000032721247,0.0001024508,0.0021616507],"study_design_scores_gemma":[0.00027135902,0.00023933941,0.13733989,0.000014182059,0.0000020110529,0.000010021939,0.000047798178,0.0000034597049,0.85433245,0.000035408433,0.007658814,0.000045246885],"about_ca_topic_score_codex":0.00023144153,"about_ca_topic_score_gemma":0.0000789526,"teacher_disagreement_score":0.12678947,"about_ca_system_score_codex":0.000008764846,"about_ca_system_score_gemma":0.000051519066,"threshold_uncertainty_score":0.30250025},"labels":[],"label_agreement":null},{"id":"W2169571611","doi":"10.1128/iai.00770-08","title":"RegA, an AraC-Like Protein, Is a Global Transcriptional Regulator That Controls Virulence Gene Expression in <i>Citrobacter rodentium</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Foundation for Climate and Atmospheric Sciences","keywords":"Citrobacter rodentium; Biology; Virulence; Microbiology; Gene; Open reading frame; Mutant; Pathogen; Enteropathogenic Escherichia coli; Genetics; Peptide sequence","score_opus":0.022389299497192833,"score_gpt":0.2700956721045023,"score_spread":0.24770637260730946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169571611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99758273,0.0007680921,0.0008759119,0.00009659791,0.00007775265,0.00031444017,0.000026263613,0.000017691342,0.00024051339],"genre_scores_gemma":[0.99783844,0.0009910484,0.00034982702,0.00030402062,0.000066905675,0.000090047666,0.000037565605,0.000008324346,0.0003138162],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998975,0.00022745185,0.0001534238,0.00026639382,0.00016477115,0.00021298822],"domain_scores_gemma":[0.99949336,0.0000057578814,0.000053534863,0.00026499547,0.00010026612,0.00008211272],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020517425,0.0001422638,0.00014173705,0.0000339155,0.0002594667,0.000028345292,0.00009115092,0.00013136888,0.000023994138],"category_scores_gemma":[0.000046805035,0.00013187595,0.000059044654,0.0001054489,0.0001676187,0.000035403307,0.00008378285,0.00017261704,0.0000030623523],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024397999,0.00016652385,0.092780046,0.000012967636,0.000019861378,0.000002560123,0.00009012553,0.0000045654883,0.90613055,0.000012408302,0.0001834462,0.0003529821],"study_design_scores_gemma":[0.0011361378,0.0002629899,0.6908257,0.000026971591,0.0000049726004,0.00004586092,0.000027501814,0.000047371097,0.30153972,0.0000702559,0.0058504147,0.00016213188],"about_ca_topic_score_codex":0.00046747213,"about_ca_topic_score_gemma":0.00026349074,"teacher_disagreement_score":0.60459083,"about_ca_system_score_codex":0.000034831937,"about_ca_system_score_gemma":0.00005944377,"threshold_uncertainty_score":0.5377745},"labels":[],"label_agreement":null},{"id":"W2169695699","doi":"10.1128/iai.68.10.5610-5618.2000","title":"Identification of Group B Streptococcal Sip Protein, Which Elicits Cross-Protective Immunity","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Biology; Immunity; Group A; Identification (biology); Streptococcus agalactiae; Streptococcus; Streptococcus pyogenes; Bacterial protein; Microbiology; STREPTOCOCCAL INFECTIONS; Immunology; Immune system; Genetics; Bacteria; Medicine; Staphylococcus aureus","score_opus":0.013656541286749308,"score_gpt":0.2953274222588957,"score_spread":0.2816708809721464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169695699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99472046,0.000055030192,0.0004905561,0.00006389156,0.0000994031,0.00076607295,0.000017456356,0.00010602223,0.0036810925],"genre_scores_gemma":[0.99816734,0.00010431924,0.000020098412,0.000033498218,0.000052353553,0.00011360342,0.000030090554,0.000012449857,0.0014662754],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99907047,0.0001335001,0.00035995396,0.00015989847,0.00013455466,0.00014163923],"domain_scores_gemma":[0.9991534,0.00002942606,0.00012225835,0.0002956354,0.00031990773,0.00007940193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034216413,0.00013237805,0.00020316978,0.000112503636,0.00031906634,0.00004177128,0.00004560276,0.000118126016,0.0006991631],"category_scores_gemma":[0.00013460015,0.00011957429,0.000074131436,0.0003455088,0.00014898615,0.00028514003,0.000038424514,0.0004131601,0.0000628052],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063618255,0.0010813086,0.057243515,0.00032999046,0.00013705186,0.000002093724,0.0004254408,0.000028952029,0.87295413,0.00076188764,0.00002342578,0.06637602],"study_design_scores_gemma":[0.0009300062,0.00050969044,0.83666986,0.00009569437,0.000036736834,0.00008574897,0.00003373301,0.0001247499,0.15878914,0.00086938625,0.0017396912,0.00011556399],"about_ca_topic_score_codex":0.0064522605,"about_ca_topic_score_gemma":0.000231962,"teacher_disagreement_score":0.77942634,"about_ca_system_score_codex":0.00005173718,"about_ca_system_score_gemma":0.000031655643,"threshold_uncertainty_score":0.97539306},"labels":[],"label_agreement":null},{"id":"W2169908590","doi":"10.1128/iai.69.11.6942-6950.2001","title":"Dual Role of Lipopolysaccharide (LPS)-Binding Protein in Neutralization of LPS and Enhancement of LPS-Induced Activation of Mononuclear Cells","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Lipopolysaccharide; Lipopolysaccharide binding protein; Tumor necrosis factor alpha; Stimulation; Peripheral blood mononuclear cell; Acute-phase protein; Membrane; Lipid A; CD14; Biology; Bacterial outer membrane; Chemistry; Cell biology; Inflammation; Biochemistry; Immunology; In vitro; Receptor; Endocrinology","score_opus":0.011719562264393552,"score_gpt":0.2327624647379249,"score_spread":0.22104290247353134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169908590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991953,0.00011663639,0.00011775151,0.000015603364,0.0000661214,0.00029350608,0.0000024284407,0.0000078567045,0.00018484109],"genre_scores_gemma":[0.99947095,0.00039703626,0.000018876583,0.0000026092798,0.000003932158,0.000008547241,0.000021452817,0.000006108082,0.00007048347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901056,0.0002664959,0.0004926445,0.000092650655,0.0000355056,0.00010215099],"domain_scores_gemma":[0.9992662,0.00005632462,0.00043015621,0.00013161753,0.000108141845,0.0000075417447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039873042,0.0000919159,0.00024779208,0.00027261156,0.00005847651,0.0000033922645,0.000035963993,0.000156913,0.00007710212],"category_scores_gemma":[0.000069849564,0.00009345044,0.000035111505,0.00017821172,0.00008988847,0.0002233763,0.00004051189,0.0001350644,0.0000018524912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004695014,0.0001918965,0.004009833,0.00008122678,0.000042205884,6.106042e-8,0.0013958612,0.000011927113,0.98425615,0.0003245885,0.0000016206486,0.00921511],"study_design_scores_gemma":[0.0008720008,0.00044529702,0.030494967,0.00015087672,0.000015868987,0.000003761066,0.0005602608,0.00003718063,0.9671767,0.00007752349,0.00009703577,0.00006852766],"about_ca_topic_score_codex":0.0026867683,"about_ca_topic_score_gemma":0.000042373194,"teacher_disagreement_score":0.026485134,"about_ca_system_score_codex":0.000023210752,"about_ca_system_score_gemma":0.000030638734,"threshold_uncertainty_score":0.40616077},"labels":[],"label_agreement":null},{"id":"W2170021240","doi":"10.1128/iai.71.10.6075-6078.2003","title":"Serum Amyloid P Component Binding to Shiga Toxin 2 Requires Both A Subunit and B Pentamer","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Pentamer; Serum amyloid P component; Protein subunit; Biology; Binding site; Shiga toxin; Amyloid (mycology); Cytotoxicity; Plasma protein binding; Toxin; Neutralization; Biochemistry; Molecular biology; In vitro; Escherichia coli; Immunology; Antibody","score_opus":0.02042836558842032,"score_gpt":0.29101211428488605,"score_spread":0.27058374869646573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170021240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678975,0.00046922758,0.00012902723,0.00012911232,0.00007773387,0.00016159292,0.000005607675,0.0000133806825,0.0022245427],"genre_scores_gemma":[0.9977908,0.0012108708,0.00011836892,0.00023704751,0.000026607191,0.00002122482,0.000008834815,0.000009284546,0.0005769601],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993028,0.00018195075,0.00009975431,0.00016178319,0.00007288935,0.00018082619],"domain_scores_gemma":[0.99965835,0.00001860463,0.000027049013,0.00015563346,0.000045400626,0.000094948184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029385596,0.00010293026,0.00009914326,0.000056647892,0.0002916506,0.00004695494,0.00003947387,0.000055930963,0.000029177867],"category_scores_gemma":[0.000195349,0.00009717488,0.000024900684,0.00010763794,0.00008729184,0.0000073740766,0.00015438865,0.00012474878,0.0000057583998],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046133733,0.000075669675,0.121361785,0.000024843237,0.000058158013,9.127128e-7,0.00017328419,0.0000029767418,0.87559694,0.00013885162,0.0006308897,0.0018895376],"study_design_scores_gemma":[0.0008971668,0.000809082,0.6007309,0.000033143147,0.000018239722,0.00003997785,0.0005028858,0.000019855814,0.2053755,0.00005588354,0.19118983,0.00032756312],"about_ca_topic_score_codex":0.000396677,"about_ca_topic_score_gemma":0.00031661114,"teacher_disagreement_score":0.67022145,"about_ca_system_score_codex":0.000015476598,"about_ca_system_score_gemma":0.000022522661,"threshold_uncertainty_score":0.39626768},"labels":[],"label_agreement":null},{"id":"W2170231988","doi":"10.1128/iai.69.8.4790-4798.2001","title":"In Situ Activation of Helper T Cells in the Lung","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; U.S. Public Health Service; National Institutes of Health; School of Medicine, New York University; York University; Deutsches Krebsforschungszentrum","keywords":"Bronchoalveolar lavage; Biology; CD69; Immunology; Molecular biology; IL-2 receptor; Flow cytometry; Population; Interleukin 2; T lymphocyte; Mycobacterium tuberculosis; Lung; T cell; Tuberculosis; Immune system; Pathology; Internal medicine; Medicine","score_opus":0.012222353850217155,"score_gpt":0.24868358377010794,"score_spread":0.23646122991989077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170231988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99040186,0.00016545264,0.00012571897,0.00019460327,0.00085480115,0.0001274055,2.4980358e-7,0.000010685275,0.008119225],"genre_scores_gemma":[0.99757516,0.000381656,0.000001514492,0.00029229952,0.000009045102,0.000010020718,0.000015158165,0.0000032890587,0.0017118539],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992942,0.00031642016,0.00019629092,0.000076421915,0.000017803757,0.00009883923],"domain_scores_gemma":[0.99967235,0.00010275954,0.0000673579,0.00012293494,0.000031171665,0.000003421228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033378883,0.00006799702,0.00009930204,0.00017024731,0.00007832691,0.00000842853,0.00004415417,0.00010559955,0.00048160358],"category_scores_gemma":[0.000043585416,0.00005285616,0.000029400237,0.00022853156,0.00005264524,0.00023776668,0.000017816545,0.0003359956,0.000043565185],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016437982,0.00024881194,0.022339314,0.000010594447,0.000012472805,4.6747803e-7,0.0014075567,0.000015909174,0.97127455,0.00018888005,0.0025944277,0.0017426439],"study_design_scores_gemma":[0.0013578205,0.00015713755,0.4585747,0.00004470442,0.0000087307935,0.000061002815,0.0012341619,0.000032214182,0.4421708,0.00007269343,0.09617515,0.00011088996],"about_ca_topic_score_codex":0.002736318,"about_ca_topic_score_gemma":0.00020292029,"teacher_disagreement_score":0.52910376,"about_ca_system_score_codex":0.000033627293,"about_ca_system_score_gemma":0.000009606622,"threshold_uncertainty_score":0.5273222},"labels":[],"label_agreement":null},{"id":"W2170273377","doi":"10.1128/iai.68.7.4084-4091.2000","title":"High Intracellular Level of Guanosine Tetraphosphate in <i>Mycobacterium smegmatis</i> Changes the Morphology of the Bacterium","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Petroleum Technology Alliance Canada","keywords":"Mycobacterium smegmatis; Biology; Guanosine; Microbiology; Bacteria; Population; Stringent response; Escherichia coli; Staining; Intracellular; Mycobacterium tuberculosis; Biochemistry; Tuberculosis; Gene","score_opus":0.034906704828924655,"score_gpt":0.26914348687377554,"score_spread":0.23423678204485088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170273377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615306,0.00034839538,0.000007024399,0.002487613,0.00019394259,0.0003594629,0.00005673603,0.000012031861,0.0003817353],"genre_scores_gemma":[0.9958889,0.0034059503,0.0000280755,0.0003213606,0.000042862506,0.000027222806,0.00002042775,0.000009795976,0.0002554301],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99897766,0.0002616224,0.00028786756,0.000117840544,0.00015384916,0.0002011772],"domain_scores_gemma":[0.9991816,0.0001527356,0.0001069318,0.00040197893,0.000101817546,0.000054885048],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041777894,0.00012055237,0.00028860982,0.00009676258,0.000086385815,0.000011785496,0.00010498343,0.000100332305,0.0013010949],"category_scores_gemma":[0.00015630426,0.000071091374,0.00006746321,0.0003981886,0.00030974988,0.00007242669,0.000068223046,0.00034392858,0.0000064403202],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049925945,0.00047581902,0.41287902,0.00024904,0.000066904104,0.000004992295,0.0004885264,0.000004030375,0.5637867,0.00013597532,0.0005850012,0.020824753],"study_design_scores_gemma":[0.0008224391,0.00028354715,0.7648352,0.000093367475,0.000027754184,0.000046626592,0.000025279101,0.000009742279,0.23126204,0.000058294696,0.0024857826,0.000049920756],"about_ca_topic_score_codex":0.008696275,"about_ca_topic_score_gemma":0.00052699057,"teacher_disagreement_score":0.3519562,"about_ca_system_score_codex":0.00002466542,"about_ca_system_score_gemma":0.000046829296,"threshold_uncertainty_score":0.99961185},"labels":[],"label_agreement":null},{"id":"W2170323587","doi":"10.1128/iai.73.6.3531-3539.2005","title":"Impairment of Protective Immunity to Blood-Stage Malaria by Concurrent Nematode Infection","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; McGill University Health Centre; McGill University","keywords":"Biology; Immunity; Malaria; Immunology; Nematode; Virology; Immune system; Ecology","score_opus":0.01317115571181026,"score_gpt":0.3003521858324387,"score_spread":0.28718103012062846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170323587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547976,0.00039702345,0.0013656692,0.00019018986,0.0005191475,0.00056606944,0.000075759555,0.00008968621,0.0013166652],"genre_scores_gemma":[0.9983149,0.00020433789,0.000021041707,0.000105261795,0.000022567794,0.00008877702,0.00008645807,0.000011226264,0.0011454332],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988778,0.00033264628,0.00034291524,0.00018189846,0.000035166606,0.00022953218],"domain_scores_gemma":[0.9992968,0.0000819065,0.00017879484,0.00025137124,0.00014733628,0.000043834953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030006035,0.00018263492,0.00025884763,0.000169706,0.00041771997,0.000024682176,0.00006960064,0.00017747395,0.0009073322],"category_scores_gemma":[0.00009402919,0.00017493316,0.00009784603,0.00019473438,0.0001172437,0.00022717273,0.00010812665,0.00054655713,0.00019765826],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027534537,0.0021509936,0.05494387,0.00006457947,0.00048701398,3.9089582e-7,0.0019163908,0.00008107252,0.9229408,0.0011456116,0.0019757154,0.014018244],"study_design_scores_gemma":[0.0017482521,0.0016052807,0.4710942,0.00007780585,0.000111313784,0.00010941742,0.00013915323,0.000027638585,0.38524815,0.000034947596,0.13950469,0.00029917047],"about_ca_topic_score_codex":0.011285851,"about_ca_topic_score_gemma":0.0007359742,"teacher_disagreement_score":0.5376926,"about_ca_system_score_codex":0.00007920615,"about_ca_system_score_gemma":0.00003238223,"threshold_uncertainty_score":0.9952981},"labels":[],"label_agreement":null},{"id":"W2170516676","doi":"10.1128/iai.73.8.5217-5221.2005","title":"Selective Capture of<i>Salmonella enterica</i>Serovar Typhi Genes Expressed in Macrophages That Are Absent from the<i>Salmonella enterica</i>Serovar Typhimurium Genome","year":2005,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Salmonella enterica; Biology; Serotype; Microbiology; Salmonella; Salmonella typhi; Enterobacteriaceae; Virology; Gene; Genome; Bacteria; Genetics; Escherichia coli","score_opus":0.023018602404687654,"score_gpt":0.2256296862103503,"score_spread":0.20261108380566265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170516676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99470216,0.0029382997,0.000021372343,0.0010614633,0.000251316,0.0003135039,0.00013032416,0.00007229794,0.0005092484],"genre_scores_gemma":[0.9950356,0.0035123746,0.000057741163,0.0008238125,0.00031220776,0.0000340985,0.00010158546,0.000004976531,0.00011762195],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978398,0.00068070623,0.00046573236,0.0004442799,0.00016828423,0.0004012104],"domain_scores_gemma":[0.99869394,0.0005282017,0.00035995583,0.00020873283,0.00010393649,0.000105241365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041251106,0.0003235241,0.00050493004,0.00003634085,0.00026708638,0.00005488308,0.00031092472,0.000241524,0.0002769379],"category_scores_gemma":[0.00007229534,0.0001467636,0.00016799234,0.0004022458,0.00020353611,0.00017174921,0.0002030497,0.0004309926,0.00003829635],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018476123,0.00028757297,0.44661865,0.000011934063,0.00006608361,0.00000430734,0.0006358223,0.000048462214,0.5428864,0.000008691621,0.0004000351,0.00884731],"study_design_scores_gemma":[0.00036618166,0.00015898145,0.95944834,0.000035856716,0.000026618074,0.000017360759,0.00067033764,0.000054637756,0.020206103,0.0001873562,0.018568963,0.0002592754],"about_ca_topic_score_codex":0.009716569,"about_ca_topic_score_gemma":0.0021103807,"teacher_disagreement_score":0.5226803,"about_ca_system_score_codex":0.00006367008,"about_ca_system_score_gemma":0.000010397585,"threshold_uncertainty_score":0.9968778},"labels":[],"label_agreement":null},{"id":"W2170601447","doi":"10.1128/iai.71.4.2022-2031.2003","title":"<i>Helicobacter pylori</i> Mutants Defective in RuvC Holliday Junction Resolvase Display Reduced Macrophage Survival and Spontaneous Clearance from the Murine Gastric Mucosa","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Holliday junction; Biology; Mutant; Homologous recombination; Microbiology; Helicobacter pylori; Infectivity; Virology; DNA; Genetics; Virus; Gene","score_opus":0.014043376271557214,"score_gpt":0.24483699538849674,"score_spread":0.23079361911693952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170601447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997062,0.0005003569,0.00008283323,0.0003621884,0.00073980034,0.0004523022,0.000025021865,0.000069364134,0.000706081],"genre_scores_gemma":[0.99784327,0.0014381872,0.000037747133,0.00040591738,0.000092447546,0.0000310405,0.000026377607,0.000025578025,0.000099455116],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9980619,0.0007165001,0.00034767887,0.00036301446,0.00015623226,0.00035465925],"domain_scores_gemma":[0.9990223,0.00027732714,0.00011792464,0.00034550639,0.00011571776,0.00012119366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005528642,0.0002747936,0.00038996,0.00013324815,0.00034568756,0.000041840645,0.00004849635,0.00016743876,0.000044566666],"category_scores_gemma":[0.0005985845,0.00020916968,0.00006258438,0.00041782056,0.00024839878,0.00016067098,0.00007456507,0.00092427456,0.000020088763],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022083104,0.00041317835,0.963002,0.000031095442,0.000316473,0.0003870318,0.0012681225,0.00000769917,0.026200484,0.000027775352,0.000093024304,0.006044809],"study_design_scores_gemma":[0.0034660166,0.00054143777,0.99011266,0.00009822592,0.00012984249,0.0015156309,0.00030651278,0.000032665357,0.0016183696,0.000034738354,0.0020008846,0.00014299185],"about_ca_topic_score_codex":0.0028759826,"about_ca_topic_score_gemma":0.0017882067,"teacher_disagreement_score":0.027110687,"about_ca_system_score_codex":0.00013432933,"about_ca_system_score_gemma":0.00003275086,"threshold_uncertainty_score":0.85296917},"labels":[],"label_agreement":null},{"id":"W2171162480","doi":"10.1128/iai.05702-11","title":"Defining the Roles of Human Carcinoembryonic Antigen-Related Cellular Adhesion Molecules during Neutrophil Responses to Neisseria gonorrhoeae","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Neisseria gonorrhoeae; Neisseria; Microbiology; Cell adhesion molecule; Immunology; Bacteria","score_opus":0.01730747942860192,"score_gpt":0.24222870528368884,"score_spread":0.22492122585508692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171162480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729824,0.0013961238,0.000010764315,0.000027188471,0.00046525535,0.00016206838,0.000007018898,0.00007204362,0.00056132296],"genre_scores_gemma":[0.99948007,0.00022681881,0.000006141989,0.000015714515,0.0000118950975,0.000012929815,0.000018225584,0.000013972384,0.0002142118],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989387,0.00040657632,0.000299341,0.00015873526,0.0000072039593,0.00018947705],"domain_scores_gemma":[0.99942046,0.000050334154,0.00012966347,0.00029496214,0.00008244309,0.00002213783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024982775,0.0001505701,0.00020305984,0.00017101751,0.0007662588,0.000018232065,0.00010027958,0.00015881236,0.00033216833],"category_scores_gemma":[0.000058010963,0.000115391704,0.00007922143,0.00021161514,0.00010631584,0.00010342979,0.00012583559,0.00026579,0.00005469251],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016689634,0.000086212385,0.07919658,0.0000124666785,0.000065058186,1.7111165e-7,0.0011376616,0.0000020184675,0.9175775,0.0012214583,0.000013270274,0.00052067806],"study_design_scores_gemma":[0.0003280971,0.00024580225,0.5918747,0.000024422345,0.000022831573,0.000025581989,0.00017764777,6.4434784e-7,0.40666628,0.000060717575,0.0004897423,0.00008349306],"about_ca_topic_score_codex":0.0033184092,"about_ca_topic_score_gemma":0.00029871985,"teacher_disagreement_score":0.51267815,"about_ca_system_score_codex":0.000016557542,"about_ca_system_score_gemma":0.000020593332,"threshold_uncertainty_score":0.5893521},"labels":[],"label_agreement":null},{"id":"W2171200979","doi":"10.1128/iai.00639-08","title":"Abelson Tyrosine Kinase Facilitates <i>Salmonella enterica</i> Serovar Typhimurium Entry into Epithelial Cells","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cell death mechanisms and regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Toronto; Yale University","keywords":"Salmonella enterica; Biology; Internalization; Tyrosine kinase; Signal transducing adaptor protein; Microbiology; Kinase; Effector; Secretion; Phosphorylation; Type three secretion system; Cell biology; ABL; Salmonella; Signal transduction; Biochemistry; Virulence; Cell; Bacteria","score_opus":0.008861132164062471,"score_gpt":0.2185359084942511,"score_spread":0.20967477633018863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171200979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961645,0.0005807886,0.0021819705,0.000049329064,0.00037454677,0.00011608685,0.00001197812,0.0000260411,0.00049477926],"genre_scores_gemma":[0.9930734,0.0049502985,0.00021049824,0.0001133139,0.00012679999,0.000007495199,0.00011751171,0.000012027911,0.0013886662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993762,0.000076024946,0.00014966741,0.00019050618,0.00006942397,0.00013821895],"domain_scores_gemma":[0.99960274,0.0000074924633,0.000054493503,0.00020376858,0.00006588451,0.0000656073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010438896,0.0001332684,0.00010780333,0.00003906528,0.0002751413,0.000016793532,0.00004561415,0.0001315559,0.00003750671],"category_scores_gemma":[0.0000163966,0.00012281998,0.000063314124,0.00007107721,0.000089558234,0.000008464292,0.00007777539,0.000099514546,0.000021586595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071674986,0.00010421976,0.0015868128,0.000020015923,0.00001783128,0.0000018164938,0.00015086908,0.000032127104,0.993355,0.000016534847,0.00048191776,0.004161176],"study_design_scores_gemma":[0.0005924635,0.00035935768,0.018687662,0.0000078121475,0.0000123358195,0.000045624834,0.00002956244,0.00011934335,0.8970759,0.000096439704,0.08279949,0.0001740067],"about_ca_topic_score_codex":0.00050165964,"about_ca_topic_score_gemma":0.000022164502,"teacher_disagreement_score":0.09627909,"about_ca_system_score_codex":0.000012756421,"about_ca_system_score_gemma":0.000018464656,"threshold_uncertainty_score":0.5008454},"labels":[],"label_agreement":null},{"id":"W2171250717","doi":"10.1128/iai.01266-10","title":"Vibrio cholerae Requires the Type VI Secretion System Virulence Factor VasX To Kill Dictyostelium discoideum","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":209,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Vibrio cholerae; Dictyostelium discoideum; Virulence; Type VI secretion system; Biology; Dictyostelium; Virulence factor; Microbiology; Secretion; Cell biology; Mutant; Cholera toxin; Gene; Genetics; Bacteria; Biochemistry","score_opus":0.034351910818637005,"score_gpt":0.27782735507107553,"score_spread":0.24347544425243853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171250717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99612045,0.0001756618,0.0005624155,0.00008611955,0.0004285404,0.00024245364,0.00001636799,0.000032078344,0.0023359214],"genre_scores_gemma":[0.99900556,0.00044496244,0.000026145623,0.00011094224,0.000118405784,0.000027987737,0.000022852057,0.0000116963065,0.00023146416],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991908,0.00018729402,0.0001446296,0.00018878958,0.00009777601,0.00019071571],"domain_scores_gemma":[0.99938595,0.0000142820945,0.00005241015,0.00034164477,0.00013042615,0.00007525827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021070053,0.00012595256,0.0001068628,0.000038777645,0.00033755528,0.00005119277,0.00011825735,0.000078128265,0.000031204767],"category_scores_gemma":[0.00018026459,0.00008844532,0.0000429891,0.000089963636,0.00011106205,0.000015800288,0.00028052897,0.00013291062,0.00003314342],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017843694,0.00004203942,0.018535204,0.000045514684,0.00006954844,7.5646267e-7,0.00068615953,0.0000016152164,0.9778646,0.00008677181,0.00030663787,0.00218272],"study_design_scores_gemma":[0.00028075775,0.0008726643,0.8202284,0.000056155783,0.000015619036,0.00002279665,0.0003771965,0.000023185425,0.15765844,0.000013519041,0.02024698,0.00020431716],"about_ca_topic_score_codex":0.0014520765,"about_ca_topic_score_gemma":0.00024949913,"teacher_disagreement_score":0.82020617,"about_ca_system_score_codex":0.000030437439,"about_ca_system_score_gemma":0.000028461853,"threshold_uncertainty_score":0.36066955},"labels":[],"label_agreement":null},{"id":"W2171355664","doi":"10.1128/iai.69.10.6217-6224.2001","title":"Enteropathogenic<i>Escherichia coli</i>Infection Induces Expression of the Early Growth Response Factor by Activating Mitogen-Activated Protein Kinase Cascades in Epithelial Cells","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada","keywords":"Biology; Signal transduction; Protein kinase A; Enteropathogenic Escherichia coli; Secretion; Type three secretion system; Cell biology; Microbiology; Kinase; Escherichia coli; Gene; Virulence","score_opus":0.013908696210773008,"score_gpt":0.25796903056820664,"score_spread":0.24406033435743363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171355664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99905384,0.00012796508,0.00008318618,0.00004493192,0.0001359542,0.00045840128,0.000025810865,0.000015702757,0.000054231976],"genre_scores_gemma":[0.9992644,0.00037179134,0.000024506799,0.000027747426,0.000038853854,0.000072854265,0.0000067679816,0.000016931484,0.00017611151],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981588,0.0010181533,0.00023522868,0.00022353537,0.00014788182,0.00021636861],"domain_scores_gemma":[0.9993797,0.000052551935,0.000166809,0.00022659276,0.0001226491,0.00005169835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039344883,0.00017080863,0.00015866799,0.00006940263,0.0002630355,0.000032091128,0.00010116872,0.00016658858,0.000009070603],"category_scores_gemma":[0.0005605439,0.0001338833,0.000072640476,0.0002892205,0.00013787438,0.000028483119,0.00021282422,0.00035059877,7.6912727e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010391042,0.00015717171,0.051169757,0.000025158935,0.000021711836,5.491688e-7,0.00031222665,0.0000022638797,0.9467449,6.995704e-7,0.000023654227,0.00050275825],"study_design_scores_gemma":[0.0004980118,0.00027588775,0.28972444,0.0000426321,0.0000028714267,0.0000018288998,0.000047376616,0.0000050628378,0.7082649,0.0000050228446,0.0010354231,0.00009654995],"about_ca_topic_score_codex":0.003548532,"about_ca_topic_score_gemma":0.00017479507,"teacher_disagreement_score":0.23855469,"about_ca_system_score_codex":0.000043950105,"about_ca_system_score_gemma":0.0000593379,"threshold_uncertainty_score":0.54596025},"labels":[],"label_agreement":null},{"id":"W2171629640","doi":"10.1128/iai.74.2.910-919.2006","title":"<i>N</i> -Acylhomoserine Lactones Antagonize Virulence Gene Expression and Quorum Sensing in <i>Staphylococcus aureus</i>","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council","keywords":"Quorum sensing; Staphylococcus aureus; Microbiology; Virulence; Pseudomonas aeruginosa; Biology; Homoserine; Bacteria; Biochemistry; Gene; Genetics","score_opus":0.00951416424319214,"score_gpt":0.24847026965120242,"score_spread":0.23895610540801027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171629640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965387,0.00073166913,0.00052230543,0.00022434072,0.00014513063,0.0002992746,0.000010087397,0.00009420213,0.0014343072],"genre_scores_gemma":[0.99732,0.0011536177,0.0009229353,0.00030543588,0.00009232411,0.000004573129,0.00002140976,0.000022270697,0.00015744129],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890137,0.00009743834,0.00032121662,0.00026918785,0.00012944052,0.00028134108],"domain_scores_gemma":[0.99939,0.000076045144,0.000106376734,0.00026611035,0.000082417675,0.00007906605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023868209,0.00020803529,0.0003281408,0.00015723787,0.00022212736,0.000050435523,0.00003451975,0.0001345505,0.000020981037],"category_scores_gemma":[0.00007091595,0.00019335312,0.000043987697,0.00028781214,0.00020474047,0.00020652232,0.00009758603,0.00036453153,0.000005020212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002021603,0.00011040059,0.17032282,0.00007823048,0.000005614181,0.000027131202,0.00007497316,0.000006258578,0.82656115,0.00001760092,0.00025236583,0.0023413145],"study_design_scores_gemma":[0.001463477,0.000107297674,0.4900393,0.00023762368,0.000019610192,0.000083729225,0.00006309718,0.00007111875,0.5022612,0.00012395502,0.0053283735,0.00020122665],"about_ca_topic_score_codex":0.003940806,"about_ca_topic_score_gemma":0.00073437835,"teacher_disagreement_score":0.32429993,"about_ca_system_score_codex":0.000060207687,"about_ca_system_score_gemma":0.000039283037,"threshold_uncertainty_score":0.78847116},"labels":[],"label_agreement":null},{"id":"W2171697552","doi":"10.1128/iai.00168-12","title":"Role of Mouse Peptidoglycan Recognition Protein PGLYRP2 in the Innate Immune Response to Salmonella enterica Serovar Typhimurium Infection <i>In Vivo</i>","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Peptidoglycan; Biology; NOD2; NOD1; Innate immune system; Microbiology; Salmonella enterica; Antimicrobial peptides; Pattern recognition receptor; Lipopolysaccharide; Immune system; Salmonella; Immunology; Bacteria; Biochemistry; Cell wall; Antimicrobial","score_opus":0.01284672947967317,"score_gpt":0.2324682992451311,"score_spread":0.21962156976545794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171697552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979202,0.0003371943,0.000057682806,0.000111233836,0.00030258505,0.0008254279,0.000018384277,0.000045859942,0.00038143326],"genre_scores_gemma":[0.99893713,0.00015441127,0.0000358883,0.00016103082,0.000017026023,0.00016357942,0.000033187946,0.000022467322,0.00047527396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959737,0.0028956614,0.00048235463,0.00018775568,0.00005841481,0.00040210344],"domain_scores_gemma":[0.9991739,0.00015236613,0.00018013989,0.00037846333,0.0000876991,0.000027430335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025771435,0.00021893243,0.0002913174,0.00053165975,0.00018626328,0.000021579914,0.00013122482,0.00025730344,0.00018209008],"category_scores_gemma":[0.00032329935,0.00019172054,0.00007627291,0.000622507,0.000112129936,0.00023770868,0.00012216315,0.0005654186,0.00017853937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031426935,0.0005139328,0.007129406,0.00002173304,0.000028343755,5.9152507e-7,0.0032047909,0.0000047317594,0.9835926,0.00004419414,0.000041731204,0.0022752262],"study_design_scores_gemma":[0.0012085013,0.00064091943,0.18222928,0.0000831956,0.000013538483,0.00008015513,0.0006473405,0.000007087226,0.8101944,0.000093167466,0.004606391,0.00019602414],"about_ca_topic_score_codex":0.0066255876,"about_ca_topic_score_gemma":0.00038647462,"teacher_disagreement_score":0.17509988,"about_ca_system_score_codex":0.000101813996,"about_ca_system_score_gemma":0.000042988308,"threshold_uncertainty_score":0.9999894},"labels":[],"label_agreement":null},{"id":"W2171976568","doi":"10.1128/iai.00151-12","title":"Cj1136 Is Required for Lipooligosaccharide Biosynthesis, Hyperinvasion, and Chick Colonization by Campylobacter jejuni","year":2012,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"University of Nottingham; Nottingham Trent University","keywords":"Biology; Campylobacter jejuni; Virulence; Transposon mutagenesis; Microbiology; Complementation; Mutant; Transposable element; Campylobacter; Mutagenesis; Gene; Genetics; Bacteria","score_opus":0.03056288963055461,"score_gpt":0.24477017975170817,"score_spread":0.21420729012115355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171976568","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770737,0.000573701,0.000038283288,0.0009716952,0.00023071237,0.00020181223,0.00005783395,0.00005595615,0.00016262547],"genre_scores_gemma":[0.9972632,0.0012359575,0.000032221265,0.0010236697,0.00017294205,0.000024974644,0.00010637346,0.0000015135785,0.00013914789],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99921143,0.00015020547,0.00018211408,0.00016252385,0.000046382618,0.00024733625],"domain_scores_gemma":[0.99938434,0.00030032254,0.000088842506,0.000055965167,0.000055494602,0.00011504064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039214315,0.00012662078,0.00017160088,0.000013834093,0.0003796157,0.000041609455,0.000051578063,0.00015764777,0.00017769559],"category_scores_gemma":[0.00018530726,0.00005856548,0.00004424767,0.00012509438,0.00007600568,0.00024288171,0.00005298098,0.000087114946,0.00001056091],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006068748,0.00016265419,0.55572224,0.000016247892,0.000026127396,5.2988252e-8,0.0002299079,7.4056324e-8,0.39106098,0.00017037464,0.0048547448,0.04769592],"study_design_scores_gemma":[0.00017155679,0.00022351104,0.82548153,0.000010650706,0.000023582375,0.000021536123,0.00008898155,0.00002487172,0.02033825,0.00027524034,0.1531653,0.0001749836],"about_ca_topic_score_codex":0.0011075627,"about_ca_topic_score_gemma":0.00012137837,"teacher_disagreement_score":0.3707227,"about_ca_system_score_codex":0.000016671347,"about_ca_system_score_gemma":0.0000031796976,"threshold_uncertainty_score":0.29197353},"labels":[],"label_agreement":null},{"id":"W2172036799","doi":"10.1128/iai.00398-09","title":"Identification of Specific and Universal Virulence Factors in <i>Burkholderia cenocepacia</i> Strains by Using Multiple Infection Hosts","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Burkholderia cenocepacia; Virulence; Biology; Burkholderia cepacia complex; Galleria mellonella; Microbiology; Burkholderia; Caenorhabditis elegans; Quorum sensing; Pseudomonas aeruginosa; Bacteria; Gene; Genetics","score_opus":0.02564538723814647,"score_gpt":0.30402556772255607,"score_spread":0.2783801804844096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172036799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776876,0.00020220102,0.0015798333,0.000027093256,0.000070631846,0.00022971052,0.000016640624,0.000026376383,0.00007874483],"genre_scores_gemma":[0.9987663,0.0011054059,0.000060845367,0.000009058047,0.000012151287,9.819507e-7,0.00002455812,0.000005275726,0.000015394735],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993013,0.00008339339,0.0002154216,0.0001434348,0.00012840625,0.00012805278],"domain_scores_gemma":[0.99957585,0.000057657322,0.00009410995,0.00012806182,0.00007813371,0.00006616271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002028308,0.00009273774,0.00015700654,0.00019074556,0.000103667306,0.000026868473,0.000020455953,0.00006336857,0.000016141734],"category_scores_gemma":[0.00020196011,0.00009249457,0.000023698163,0.00028837015,0.00012787296,0.0003422026,0.000018079718,0.0001985493,6.9857765e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006035983,0.00012886933,0.25658903,0.000032720392,0.0000052083865,5.397568e-7,0.00024592897,0.000014967396,0.73517966,0.000014140449,0.0000136866975,0.007714925],"study_design_scores_gemma":[0.0008014291,0.00025816544,0.8950294,0.000073023984,0.000008812422,0.000010097363,0.00016217465,0.0010751691,0.10210629,0.000048806935,0.00035437834,0.000072253824],"about_ca_topic_score_codex":0.0020771225,"about_ca_topic_score_gemma":0.00013865595,"teacher_disagreement_score":0.6384404,"about_ca_system_score_codex":0.00010297084,"about_ca_system_score_gemma":0.000025632226,"threshold_uncertainty_score":0.37718192},"labels":[],"label_agreement":null},{"id":"W2172133313","doi":"10.1128/iai.00287-07","title":"Interleukin 18 Participates in the Early Inflammatory Response and Bacterial Clearance during Pneumonia Caused by Nontypeable <i>Haemophilus influenzae</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Haemophilus influenzae; Immunology; Biology; Pneumonia; Innate immune system; Chemokine; Cytokine; Proinflammatory cytokine; Immune system; Microbiology; Bacterial pneumonia; Respiratory tract; Respiratory system; Inflammation; Medicine; Antibiotics; Internal medicine","score_opus":0.01243172315300853,"score_gpt":0.24766616337036063,"score_spread":0.2352344402173521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172133313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984823,0.0006355866,0.0000099676245,0.00012741315,0.0002883225,0.0002456279,0.0000037405973,0.00005303129,0.00015401797],"genre_scores_gemma":[0.99941057,0.00020323088,0.0000015674425,0.00010277565,0.000022064783,0.00002035297,0.000014756959,0.0000119433735,0.00021272775],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99815416,0.00092585164,0.00039100245,0.00016838788,0.000038779956,0.00032179637],"domain_scores_gemma":[0.99922633,0.00034696783,0.00012202188,0.00023915333,0.00004448461,0.00002101541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001898721,0.00016645371,0.00018975616,0.00015507509,0.00040173964,0.00006691775,0.0000966437,0.00021081041,0.00006580107],"category_scores_gemma":[0.00021826106,0.00013797788,0.000035030545,0.00016764239,0.00022568533,0.00034713128,0.00007283348,0.00048466993,0.000056288514],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005377308,0.000059388156,0.039052848,0.00001899123,0.00003078275,0.0000060574166,0.0033506283,0.0000015233444,0.95069796,0.000021616897,0.00009407126,0.0012888266],"study_design_scores_gemma":[0.0014612587,0.00020757303,0.7717989,0.000039849878,0.0000098293785,0.00006277396,0.00023269876,0.0000018351927,0.2164915,0.000023107086,0.0095394,0.00013124323],"about_ca_topic_score_codex":0.0010106869,"about_ca_topic_score_gemma":0.000286763,"teacher_disagreement_score":0.73420644,"about_ca_system_score_codex":0.000047514073,"about_ca_system_score_gemma":0.00002611342,"threshold_uncertainty_score":0.5626575},"labels":[],"label_agreement":null},{"id":"W2177788257","doi":"10.1128/iai.00697-15","title":"The<i>Cnes2</i>Locus on Mouse Chromosome 17 Regulates Host Defense against Cryptococcal Infection through Pleiotropic Effects on Host Immunity","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada); McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Cryptococcus neoformans; Congenic; Immune system; Immunity; Spleen; Immunology; Cryptococcosis; Microbiology; Interferon gamma; Phenotype; Flow cytometry; Gene; Genetics","score_opus":0.02676307493688884,"score_gpt":0.281203669807626,"score_spread":0.25444059487073717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2177788257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824521,0.0004509141,0.000051153922,0.00057078624,0.0011519707,0.00091012276,0.000009449042,0.00034155083,0.014061939],"genre_scores_gemma":[0.9950627,0.002565999,0.000019049416,0.00077320373,0.00036874294,0.00014438339,0.000035184563,0.00004310206,0.0009876307],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99801016,0.00050446746,0.00040383666,0.0003329527,0.00031632034,0.0004322459],"domain_scores_gemma":[0.99792695,0.0005841181,0.00017875343,0.0007348066,0.00036506698,0.000210289],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0005545222,0.00041981394,0.00048443078,0.00018754472,0.001857275,0.00015475322,0.00007607043,0.00025503125,0.000017739894],"category_scores_gemma":[0.0009949872,0.00030078035,0.00020129212,0.00048836466,0.00035367714,0.00027486362,0.00013495574,0.0011077083,0.00013193874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009452687,0.010517642,0.48370287,0.0014177219,0.0034725855,0.00014849313,0.010182965,0.0008053035,0.3652807,0.012167765,0.053005125,0.04984616],"study_design_scores_gemma":[0.0064776125,0.0090048835,0.79865056,0.0005239999,0.00023333084,0.00016956528,0.00034985982,0.00015854441,0.09117609,0.000582649,0.091931544,0.00074133434],"about_ca_topic_score_codex":0.0034751825,"about_ca_topic_score_gemma":0.00048611325,"teacher_disagreement_score":0.31494772,"about_ca_system_score_codex":0.0003621876,"about_ca_system_score_gemma":0.00008477908,"threshold_uncertainty_score":0.99994445},"labels":[],"label_agreement":null},{"id":"W2179526123","doi":"10.1128/iai.00970-15","title":"Campylobacter jejuni Increases Flagellar Expression and Adhesion of Noninvasive Escherichia coli: Effects on Enterocytic Toll-Like Receptor 4 and CXCL-8 Expression","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture Food and Rural Development; University of Calgary","funders":"","keywords":"Campylobacter jejuni; Microbiology; Biology; Bacterial adhesin; Virulence; Escherichia coli; Flagellum; Flagellin; Dysbiosis; Proinflammatory cytokine; Campylobacteriosis; Enteropathogenic Escherichia coli; Gut flora; Immunology; Gene; Bacteria; Inflammation; Genetics","score_opus":0.023866409366090188,"score_gpt":0.238443672516238,"score_spread":0.2145772631501478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179526123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99876577,0.00042974338,0.0000042542533,0.00006782029,0.00021257119,0.00022485432,0.000010291724,0.00004210402,0.00024257887],"genre_scores_gemma":[0.99859524,0.0009063373,0.00004817529,0.00025846853,0.000088291774,0.000014088276,0.00003834364,0.0000019970932,0.00004903607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985495,0.00066864374,0.00022670384,0.000261027,0.00011300949,0.00018108457],"domain_scores_gemma":[0.998864,0.00061849365,0.00015775718,0.000087188346,0.000074973206,0.00019759922],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035533344,0.00018869858,0.00030288682,0.000028316086,0.00021027609,0.000034978017,0.00006390785,0.00019021341,0.000046396926],"category_scores_gemma":[0.00030381896,0.00008419417,0.000042604563,0.00011178453,0.00011444282,0.00015880623,0.00015767828,0.00018309875,0.0000064820056],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027176007,0.00013491063,0.093072124,0.0000362124,0.000008969294,0.0000015989865,0.00018625987,3.8350902e-7,0.898113,0.000006754749,0.00051611685,0.0076519097],"study_design_scores_gemma":[0.000794751,0.0018934312,0.57190555,0.00027398832,0.000023416154,0.000023934132,0.00032546904,0.000013944142,0.41973218,0.00016287022,0.0046400386,0.00021044523],"about_ca_topic_score_codex":0.0010969798,"about_ca_topic_score_gemma":0.000085927066,"teacher_disagreement_score":0.4788334,"about_ca_system_score_codex":0.000025255838,"about_ca_system_score_gemma":0.000008350826,"threshold_uncertainty_score":0.34333387},"labels":[],"label_agreement":null},{"id":"W2192476739","doi":"10.1128/iai.01240-15","title":"Low-Dose Intestinal Trichuris muris Infection Alters the Lung Immune Microenvironment and Can Suppress Allergic Airway Inflammation","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Fonds National de la Recherche Luxembourg; European Commission; Michael Smith Health Research BC; Canada Foundation for Innovation; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Government of Canada; Crohn's and Colitis Foundation","keywords":"Immunology; Biology; Immune system; Inflammation; Lung; Innate immune system; Acquired immune system; Immunity; Medicine; Internal medicine","score_opus":0.013791625449949028,"score_gpt":0.22099290619340908,"score_spread":0.20720128074346006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2192476739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99610674,0.0011083316,0.00031425006,0.00023139612,0.00089120126,0.0003814247,0.000055424625,0.0000935717,0.0008176552],"genre_scores_gemma":[0.99737,0.0017067795,0.000014636592,0.00008762876,0.000068313006,0.000046972913,0.0001676464,0.000016803162,0.0005212042],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984581,0.0005982769,0.00035367918,0.00023936114,0.000055543707,0.00029503764],"domain_scores_gemma":[0.99923277,0.0001185515,0.00019239892,0.00030771553,0.000092679,0.000055861914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006285253,0.0002451399,0.00023932461,0.00014832882,0.0006794989,0.00006292056,0.00009115577,0.0002032462,0.000068271765],"category_scores_gemma":[0.00019603744,0.0001935184,0.00006394454,0.00017542967,0.00035816818,0.00025287186,0.00017105017,0.0005637622,0.000057223384],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00100541,0.000728904,0.117865086,0.00026915746,0.0005339976,0.00000866668,0.018556293,0.0002779977,0.80174065,0.00026325308,0.007858552,0.050892062],"study_design_scores_gemma":[0.0058088494,0.0011350312,0.6090919,0.00014290858,0.00020860758,0.0008275018,0.0011072741,0.00024952507,0.26242164,0.00022139611,0.11811058,0.000674817],"about_ca_topic_score_codex":0.005871154,"about_ca_topic_score_gemma":0.00036733254,"teacher_disagreement_score":0.539319,"about_ca_system_score_codex":0.00012748015,"about_ca_system_score_gemma":0.000057839974,"threshold_uncertainty_score":0.8875468},"labels":[],"label_agreement":null},{"id":"W2253947615","doi":"10.1128/iai.00843-15","title":"Uncovering an Important Role for YopJ in the Inhibition of Caspase-1 in Activated Macrophages and Promoting Yersinia pseudotuberculosis Virulence","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Yersinia pseudotuberculosis; Biology; Microbiology; Effector; Yersinia; Yersinia pestis; Mutant; Type three secretion system; Inflammasome; Innate immune system; Secretion; Virulence; Cell biology; Immune system; Inflammation; Bacteria; Immunology; Gene; Biochemistry","score_opus":0.01161883740269386,"score_gpt":0.28127172634997977,"score_spread":0.2696528889472859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2253947615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995128,0.00007592751,0.000035768695,0.00006624426,0.000017197444,0.0002380469,0.000018564808,0.0000039213933,0.000031538042],"genre_scores_gemma":[0.99956465,0.00031162726,0.000033291144,0.000020857537,0.0000149782545,0.000023802011,0.000019937328,0.000006435493,0.0000044235],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934864,0.00015662868,0.00016135363,0.00014762474,0.0000532881,0.00013245935],"domain_scores_gemma":[0.9996849,0.00004906823,0.000061181534,0.00013564141,0.000043912612,0.000025306512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000509155,0.000074879215,0.00008735339,0.0000722261,0.00006757399,0.000019722587,0.00004058867,0.00007674714,0.000004054502],"category_scores_gemma":[0.00016958725,0.00005311923,0.000018478657,0.00010629116,0.00006848556,0.000027092494,0.000045115943,0.000081803046,1.8093866e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103144375,0.000064245396,0.16925953,0.000027964898,0.0000051421293,6.679537e-7,0.00027938557,0.000001823561,0.8272556,0.00000249453,0.0000014379489,0.00299854],"study_design_scores_gemma":[0.00046627223,0.0002941182,0.37991774,0.000043022614,0.0000026665007,0.000015562344,0.00012848618,0.000042431206,0.61894476,0.000044750857,0.000046803136,0.00005335942],"about_ca_topic_score_codex":0.0010570498,"about_ca_topic_score_gemma":0.00085610437,"teacher_disagreement_score":0.21065822,"about_ca_system_score_codex":0.000019722413,"about_ca_system_score_gemma":0.000022855493,"threshold_uncertainty_score":0.21661393},"labels":[],"label_agreement":null},{"id":"W2263441127","doi":"10.1128/iai.00912-15","title":"Surface Polysaccharide Mutants Reveal that Absence of O Antigen Reduces Biofilm Formation of Actinobacillus pleuropneumoniae","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada","keywords":"Actinobacillus pleuropneumoniae; Biofilm; Microbiology; Mutant; Biology; Pasteurellaceae; Virulence; Antigen; Bacterial capsule; Polysaccharide; Bacteria; Lipopolysaccharide; Serotype; Gene; Biochemistry; Immunology; Antibiotics; Haemophilus influenzae; Genetics","score_opus":0.06555858659375073,"score_gpt":0.3058073059708938,"score_spread":0.24024871937714304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2263441127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763346,0.000763619,0.00011222942,0.000035269313,0.00031588154,0.00015942878,0.000060420665,0.000035271813,0.00088444416],"genre_scores_gemma":[0.9989384,0.0007717061,0.000017112183,0.000010316486,0.0000074651225,0.0000021094963,0.000028960942,0.0000064845112,0.00021747749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990714,0.0003072567,0.00027107028,0.00012154227,0.00004987706,0.0001788588],"domain_scores_gemma":[0.9992502,0.00006713882,0.00020309766,0.00020105949,0.00023524203,0.00004330508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046433453,0.00010881194,0.00021246495,0.00013868409,0.00016332397,0.000014334501,0.00007956756,0.00012791179,0.00010772989],"category_scores_gemma":[0.00015477375,0.000098153454,0.00006111353,0.00024210144,0.0002463002,0.000293461,0.000094483075,0.00021124788,0.000039759394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115496856,0.0001439158,0.025625013,0.000038903454,0.000039226223,4.5126848e-7,0.0004355987,0.000012920716,0.9707449,0.000040967036,0.00031411566,0.0024884841],"study_design_scores_gemma":[0.0006070102,0.00021187523,0.058225673,0.000043412198,0.000014000778,0.000085104424,0.0004236592,0.000015574211,0.9392004,0.00005276273,0.0010211834,0.00009936644],"about_ca_topic_score_codex":0.004152892,"about_ca_topic_score_gemma":0.00005388663,"teacher_disagreement_score":0.03260066,"about_ca_system_score_codex":0.000032322976,"about_ca_system_score_gemma":0.00009154933,"threshold_uncertainty_score":0.6277958},"labels":[],"label_agreement":null},{"id":"W2278881254","doi":"10.1128/iai.01377-15","title":"The Campylobacter jejuni Ferric Uptake Regulator Promotes Acid Survival and Cross-Protection against Oxidative Stress","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Campylobacter jejuni; Biology; Mutant; Oxidative stress; Virulence; Microbiology; Catalase; Biochemistry; Gene; Bacteria; Genetics","score_opus":0.03278470857360321,"score_gpt":0.25504860354999576,"score_spread":0.22226389497639254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2278881254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977375,0.00016792252,0.000020966465,0.00093415956,0.00032066592,0.00019933004,0.00002375255,0.000071656075,0.00052401406],"genre_scores_gemma":[0.9986624,0.00074547844,0.0000034566099,0.00006204844,0.00014436821,0.000022684613,0.000012635604,0.0000012806039,0.00034565167],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99883246,0.0004211545,0.00020814258,0.00022530554,0.000079078476,0.00023383844],"domain_scores_gemma":[0.9992947,0.00031814197,0.000119748474,0.00008932648,0.000097858414,0.00008019777],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005710368,0.00014649675,0.0001535664,0.000011531954,0.000872492,0.00011932938,0.000087415676,0.00013745765,0.0000647856],"category_scores_gemma":[0.00029977527,0.000043083073,0.000050447547,0.00014475251,0.00029537495,0.00021466569,0.00009686958,0.00015547287,0.000012060913],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007189569,0.000052269406,0.22191356,0.000004343247,0.000024448038,3.7918244e-7,0.000056291447,1.3977568e-7,0.43159062,0.00023739864,0.000030476493,0.34601817],"study_design_scores_gemma":[0.00019092356,0.0002395344,0.97176874,0.000019390376,0.0000059500326,0.000010968331,0.000107771826,0.00000951819,0.015215352,0.0007416992,0.011564513,0.00012562868],"about_ca_topic_score_codex":0.00081588695,"about_ca_topic_score_gemma":0.0017850318,"teacher_disagreement_score":0.7498552,"about_ca_system_score_codex":0.000027855307,"about_ca_system_score_gemma":0.0000053463827,"threshold_uncertainty_score":0.67105913},"labels":[],"label_agreement":null},{"id":"W2285490426","doi":"10.1128/iai.01378-15","title":"Tissue-Resident T Cells as the Central Paradigm of Chlamydia Immunity","year":2016,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Chlamydia; Pathogenesis; Biology; Immunology; Chlamydia trachomatis; Immunity; Trachoma; Immune system; Cytokine; Chlamydiae; Virology; Medicine; Pathology","score_opus":0.041187078694924634,"score_gpt":0.35741003900759494,"score_spread":0.3162229603126703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2285490426","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.007371997,0.98562723,0.000043355605,0.000058728114,0.0017928618,0.0012286676,0.000076006356,0.000076038115,0.003725107],"genre_scores_gemma":[0.009918058,0.9851996,0.0000015218699,0.000010973597,0.00009683681,0.00011668777,0.000080188234,0.000038841332,0.0045373165],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955266,0.0027531793,0.00073247397,0.00038952532,0.000085188694,0.0005130322],"domain_scores_gemma":[0.99701834,0.0010075534,0.00051149854,0.0012481423,0.00016828648,0.000046208253],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011594642,0.0004370297,0.0011160512,0.00034259318,0.000729183,0.000049409475,0.00041005466,0.0006302004,0.0023133927],"category_scores_gemma":[0.00047746213,0.000259616,0.0003900768,0.00042233543,0.0010383208,0.00017954246,0.00033682684,0.001703872,0.00153505],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000408889,0.00030812458,0.00013942586,0.0017375384,0.00087526056,0.0000017824689,0.00032083038,3.3434523e-7,0.0049656504,0.0010057727,0.0011513388,0.9894531],"study_design_scores_gemma":[0.00031754156,0.00022936777,0.003357338,0.0013691545,0.00026141418,0.00033073046,0.000027025857,2.2190898e-8,0.010427704,0.00022271556,0.98318803,0.00026895388],"about_ca_topic_score_codex":0.0076322206,"about_ca_topic_score_gemma":0.00007529458,"teacher_disagreement_score":0.9891841,"about_ca_system_score_codex":0.00017920719,"about_ca_system_score_gemma":0.00037325296,"threshold_uncertainty_score":0.99998564},"labels":[],"label_agreement":null},{"id":"W2288573439","doi":"10.1128/iai.01275-15","title":"Streptococcus pneumoniae Colonization Disrupts the Microbial Community within the Upper Respiratory Tract of Aging Mice","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Ontario Ministry of Research, Innovation and Science; Canada Research Chairs; Government of Canada","keywords":"Streptococcus pneumoniae; Biology; Colonization; Respiratory tract; Microbiology; Respiratory tract infections; Streptococcaceae; Respiratory system; Antibiotics","score_opus":0.025105440615591536,"score_gpt":0.2916336477213023,"score_spread":0.26652820710571073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288573439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99645114,0.00007410679,0.00019317349,0.0017445774,0.00032753218,0.00042625418,0.000010880822,0.000062597384,0.0007097264],"genre_scores_gemma":[0.99880147,0.00007998991,0.0000016958506,0.0008578366,0.000081079714,0.000026940128,0.000003481427,0.000014201159,0.0001333023],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984259,0.0008855453,0.00032089592,0.0001038516,0.00012091428,0.00014290615],"domain_scores_gemma":[0.99865043,0.0004243404,0.00021135798,0.00047340183,0.0001830861,0.000057389516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009331847,0.00013901705,0.00018032688,0.00009175928,0.0011167007,0.000029415407,0.00010093559,0.00010441,0.000045732857],"category_scores_gemma":[0.00034312945,0.00006570484,0.0000962834,0.00027648816,0.0004591781,0.00015542956,0.00007914035,0.0006059827,0.000011836632],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017515733,0.00026136555,0.4884025,0.000034310346,0.00004824338,6.2472725e-7,0.0010641566,0.0000069939206,0.5074103,0.0001428227,0.00010384955,0.0025073567],"study_design_scores_gemma":[0.00083304546,0.0003327354,0.957582,0.00013935102,0.00009117703,0.000059114464,0.00037335776,0.000014084932,0.029041186,0.00009056284,0.011348381,0.000094980125],"about_ca_topic_score_codex":0.00058606244,"about_ca_topic_score_gemma":0.00033607133,"teacher_disagreement_score":0.4783691,"about_ca_system_score_codex":0.00006292276,"about_ca_system_score_gemma":0.00010091545,"threshold_uncertainty_score":0.85888714},"labels":[],"label_agreement":null},{"id":"W2288620069","doi":"10.1128/iai.01504-15","title":"Cigarette Smoke Attenuates the Nasal Host Response to Streptococcus pneumoniae and Predisposes to Invasive Pneumococcal Disease in Mice","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University Medical Centre; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus pneumoniae; Immunology; Pneumococcal infections; Medicine; Context (archaeology); Respiratory tract; Disease; Biology; Microbiology; Respiratory system; Internal medicine; Antibiotics","score_opus":0.018117833410953892,"score_gpt":0.28128963024031467,"score_spread":0.26317179682936076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2288620069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821944,0.00006292225,0.000024720566,0.016399033,0.00020279932,0.000906955,0.00003732345,0.000074156866,0.00009767192],"genre_scores_gemma":[0.99719244,0.00013898332,0.000001203364,0.0021664128,0.00007675646,0.00018670733,0.0000026476916,0.0000175803,0.00021724765],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987084,0.00036718627,0.00025022624,0.00027775342,0.00013766438,0.0002587689],"domain_scores_gemma":[0.9985205,0.0006012488,0.000051185747,0.00032248214,0.00011312676,0.0003914819],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044618477,0.00019096409,0.00021212803,0.0002730328,0.00033398587,0.000051281808,0.00006548006,0.00008400749,0.000032062024],"category_scores_gemma":[0.0015298229,0.00011386552,0.000057223282,0.0003602092,0.00016925286,0.0001560703,0.0001459716,0.00026891107,0.000027930659],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046333918,0.000099143406,0.57212067,0.00001774686,0.000023635801,0.000013247066,0.0004456315,0.0000027838155,0.42486194,0.000009646497,0.000071596274,0.0018706362],"study_design_scores_gemma":[0.0009366175,0.0006744169,0.98057497,0.00026153162,0.00004988528,0.000028341907,0.0001263905,0.0000052956875,0.0076106973,0.000027610397,0.009542753,0.00016146705],"about_ca_topic_score_codex":0.00037531124,"about_ca_topic_score_gemma":0.0005907599,"teacher_disagreement_score":0.41725123,"about_ca_system_score_codex":0.00009619155,"about_ca_system_score_gemma":0.00013564137,"threshold_uncertainty_score":0.46433014},"labels":[],"label_agreement":null},{"id":"W2324410604","doi":"10.1128/iai.06052-11","title":"Acknowledgment of <i>Ad Hoc</i> Reviewers","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Diverse Scientific and Economic Studies","field":"Economics, Econometrics and Finance","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Post hoc; Medicine; Internal medicine","score_opus":0.09314297227924295,"score_gpt":0.21833380776382671,"score_spread":0.12519083548458376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2324410604","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3496332,0.0055327034,0.000114719274,0.00001469789,0.0016020419,0.000089261186,0.00003531257,0.000018357148,0.6429597],"genre_scores_gemma":[0.9654631,0.013953265,0.00020182408,0.00008965928,0.00001544432,0.000008244977,0.0000025289298,0.000005652115,0.020260261],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99953586,0.000009017042,0.0002475686,0.00011690616,0.0000084061185,0.00008224878],"domain_scores_gemma":[0.99963844,0.000008577624,0.00014619523,0.00015473139,0.000025199084,0.00002686653],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00040733203,0.000056701163,0.00018308846,0.00007849047,0.000086521286,0.000009846806,0.000048222544,0.00002720709,0.0039615165],"category_scores_gemma":[0.000048936407,0.000060741564,0.000053875247,0.000083561936,0.000096160074,0.000123095,0.00006092252,0.000053171792,0.0016742982],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012137107,0.001197406,0.5169754,0.0005245445,0.0006211559,0.0000013366224,0.022595149,0.0000037291309,0.00018151246,0.23683074,0.15739131,0.063556336],"study_design_scores_gemma":[0.00043264922,0.00010154695,0.13541478,0.000026623782,0.00001027347,0.0000016908486,0.00036582316,0.000027149541,0.0003936839,0.004567142,0.858493,0.00016566069],"about_ca_topic_score_codex":0.00028941836,"about_ca_topic_score_gemma":0.000016046779,"teacher_disagreement_score":0.70110166,"about_ca_system_score_codex":0.000020321966,"about_ca_system_score_gemma":0.0000034517386,"threshold_uncertainty_score":0.999103},"labels":[],"label_agreement":null},{"id":"W2338202961","doi":"10.1128/iai.01426-15","title":"CD47-SIRPα Interactions Regulate Macrophage Uptake of Plasmodium falciparum-Infected Erythrocytes and Clearance of Malaria <i>In Vivo</i>","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"CD47; Biology; Phagocytosis; Parasitemia; Macrophage; Plasmodium falciparum; Innate immune system; Plasmodium berghei; Immune system; Immunology; In vivo; Cell biology; In vitro; Malaria","score_opus":0.013355994767994083,"score_gpt":0.2469640311587192,"score_spread":0.2336080363907251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2338202961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974117,0.0009636676,0.0001711458,0.000101932776,0.0003741937,0.0001690764,0.00003684161,0.000032761556,0.0007386308],"genre_scores_gemma":[0.99813753,0.0011608108,0.00002458124,0.000014509949,0.000007978869,0.000009662357,0.000009904332,0.000010907013,0.0006241261],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989297,0.00022493428,0.00045840524,0.00017649516,0.000028930779,0.00018154217],"domain_scores_gemma":[0.9992423,0.00015152544,0.00025523768,0.00023592546,0.00009724887,0.000017742765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026502876,0.00014940352,0.00032965338,0.00019435,0.00012811791,0.000008755904,0.000060330774,0.00016685895,0.00028598364],"category_scores_gemma":[0.00010208347,0.00011736751,0.00006601962,0.00018117085,0.00033488605,0.0003054128,0.00008365418,0.00018694058,0.000010240685],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033005327,0.00016009291,0.021352941,0.000038701655,0.000074721036,2.574883e-7,0.00021328784,0.000004275408,0.96350205,0.0006760087,0.00009938543,0.013548221],"study_design_scores_gemma":[0.0013334419,0.00014799372,0.53428155,0.00013204552,0.000019901616,0.000037022743,0.000029617915,0.000015083328,0.45956904,0.000117094794,0.004232735,0.000084505045],"about_ca_topic_score_codex":0.0007885827,"about_ca_topic_score_gemma":0.00017724808,"teacher_disagreement_score":0.5129286,"about_ca_system_score_codex":0.00003163201,"about_ca_system_score_gemma":0.000023240207,"threshold_uncertainty_score":0.4786108},"labels":[],"label_agreement":null},{"id":"W2342984768","doi":"10.1128/iai.00139-16","title":"Protection against Streptococcus suis Serotype 2 Infection Using a Capsular Polysaccharide Glycoconjugate Vaccine","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Biology; Microbiology; Glycoconjugate; Serotype; Streptococcus suis; Polysaccharide; Bacterial capsule; Virology; Streptococcus; Streptococcaceae; Bacteria; Virulence; Antibiotics; Bioinformatics","score_opus":0.03891204384392866,"score_gpt":0.29746159185282167,"score_spread":0.258549548008893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342984768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936375,0.000057174922,0.0034467466,0.00018504608,0.0004205407,0.0012911581,0.000009420995,0.0002938307,0.00065855664],"genre_scores_gemma":[0.9987496,0.00040139508,0.00006093814,0.00008635145,0.00016415381,0.00016792731,0.0000115449475,0.0000319903,0.00032606063],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987538,0.0001370494,0.00034927053,0.00032778806,0.00014165032,0.0002904791],"domain_scores_gemma":[0.9990173,0.000035476507,0.00016568875,0.00037087407,0.00023155563,0.00017912473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020743889,0.00026831552,0.00030850508,0.0003240725,0.00048415211,0.00005291354,0.000025126708,0.0001930924,0.00029937056],"category_scores_gemma":[0.0001639155,0.00019066426,0.0001441716,0.00043799236,0.00006460293,0.00040297568,0.00005706194,0.00027125212,0.00007543144],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016631422,0.00032038268,0.68083614,0.00004386393,0.00018358974,0.0000071281625,0.000038896756,0.000009136208,0.27056766,0.000032537326,0.00003228652,0.047762107],"study_design_scores_gemma":[0.0042563723,0.0009317494,0.9031349,0.00030748124,0.00021172945,0.00023317529,0.000014358905,0.00046392,0.08580921,0.00017425299,0.004182096,0.00028076617],"about_ca_topic_score_codex":0.011403665,"about_ca_topic_score_gemma":0.00052423944,"teacher_disagreement_score":0.22229877,"about_ca_system_score_codex":0.0003168795,"about_ca_system_score_gemma":0.000072991636,"threshold_uncertainty_score":0.9951795},"labels":[],"label_agreement":null},{"id":"W2407259176","doi":"10.1128/iai.00324-16","title":"Distribution and Evolution of Yersinia Leucine-Rich Repeat Proteins","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Natural Science Foundation of China","keywords":"Biology; Leucine; Yersinia; Bacterial protein; Microbiology; Computational biology; Bacteria; Genetics; Amino acid","score_opus":0.009746071840530597,"score_gpt":0.2598600700294204,"score_spread":0.2501139981888898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2407259176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963078,0.00017298867,0.0028735423,0.00011293477,0.00005178293,0.00015066659,0.00003432901,0.000010309886,0.00028562866],"genre_scores_gemma":[0.99926573,0.00036272226,0.000032643962,0.0000066259454,0.000037277696,0.000008471689,0.00005727787,0.0000055220817,0.00022370426],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99943006,0.00011313573,0.00012202467,0.0001494058,0.00006659643,0.00011877492],"domain_scores_gemma":[0.99957204,0.000016378683,0.000055990822,0.0001905429,0.00011779978,0.000047271144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022089547,0.00007531914,0.000084836596,0.00004077319,0.00010250876,0.000011677723,0.000034762343,0.00010178554,0.000015384863],"category_scores_gemma":[0.0002273578,0.000058482758,0.000023951201,0.00008377376,0.00013779402,0.000012639053,0.000080412836,0.00006675667,0.0000035067612],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092902825,0.000036871847,0.19812492,0.000018895153,0.000013937307,1.5382648e-7,0.000014039283,2.3491387e-7,0.79829705,0.000039583352,0.00012524531,0.0032361685],"study_design_scores_gemma":[0.0004503887,0.00036487493,0.7010632,0.000021055877,0.000006671721,0.00002402348,0.00001251277,0.0000068428494,0.29466617,0.000034114182,0.0032820362,0.00006807438],"about_ca_topic_score_codex":0.000397559,"about_ca_topic_score_gemma":0.000074636555,"teacher_disagreement_score":0.5036309,"about_ca_system_score_codex":0.0000385904,"about_ca_system_score_gemma":0.00003615564,"threshold_uncertainty_score":0.23848577},"labels":[],"label_agreement":null},{"id":"W2495347620","doi":"10.1128/iai.00106-16","title":"EseE of Edwardsiella tarda Augments Secretion of Translocon Protein EseC and Expression of the <i>escC</i> - <i>eseE</i> Operon","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute","funders":"Fundamental Research Funds for the Central Universities; National Natural Science Foundation of China","keywords":"Translocon; Biology; Operon; Effector; Secretion; Chaperone (clinical); Edwardsiella tarda; Type three secretion system; Microbiology; Cell biology; Mutant; Gene; Genetics; Biochemistry; Chromosomal translocation","score_opus":0.008361090773568234,"score_gpt":0.23793194461716916,"score_spread":0.22957085384360093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2495347620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865943,0.00024635706,0.00034518816,0.0000877957,0.000046478715,0.00029977423,0.00003009914,0.0000029168514,0.0002819468],"genre_scores_gemma":[0.9990033,0.00078474294,0.000025348305,0.000009359665,0.000016104521,0.00001730976,0.0000061405467,0.0000059614094,0.00013173872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993062,0.00019508832,0.00018339025,0.00011381061,0.000109219836,0.00009226212],"domain_scores_gemma":[0.99951184,0.0000140187885,0.00011593748,0.00021817024,0.00011352368,0.000026490494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002446357,0.00008326674,0.00013474756,0.00002586063,0.00007229647,0.0000043402833,0.00006964584,0.00007798288,0.00001320607],"category_scores_gemma":[0.00011346567,0.00004885675,0.00004830654,0.000054905086,0.00026876875,0.000010517344,0.00016245506,0.000059389982,1.8326973e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016907282,0.000059222974,0.011013624,0.000117612675,0.000023252687,2.9514725e-8,0.000085507934,6.754183e-7,0.98457783,0.000005242145,0.000039611703,0.0039083],"study_design_scores_gemma":[0.0007486512,0.000372069,0.055193778,0.00014249183,0.000008442731,0.0000016472286,0.000033080214,0.0000018003135,0.9419666,0.0000345161,0.00144486,0.000052095053],"about_ca_topic_score_codex":0.00033681132,"about_ca_topic_score_gemma":0.000048923426,"teacher_disagreement_score":0.044180155,"about_ca_system_score_codex":0.0000068342706,"about_ca_system_score_gemma":0.00002858328,"threshold_uncertainty_score":0.19923204},"labels":[],"label_agreement":null},{"id":"W2502952051","doi":"10.1128/iai.00456-16","title":"Attachment of Actinobacillus suis H91-0380 and Its Isogenic Adhesin Mutants to Extracellular Matrix Components of the Tonsils of the Soft Palate of Swine","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Bacterial adhesin; Extracellular matrix; Streptococcus suis; Microbiology; Fibronectin; Pasteurellaceae; Cell biology; Haemophilus influenzae; Genetics; Gene","score_opus":0.025276775478235022,"score_gpt":0.28827315210295434,"score_spread":0.2629963766247193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2502952051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733096,0.0017188686,0.000051609313,0.0001393484,0.00021411412,0.00034619082,0.00013154994,0.0000067892843,0.000060554496],"genre_scores_gemma":[0.99896324,0.0004184189,0.0000031262093,0.0000074517097,0.000004607363,0.0000048745997,0.0000032731075,0.0000058611527,0.0005891618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998898,0.00040343025,0.00036769922,0.00012010576,0.000054110275,0.00015664795],"domain_scores_gemma":[0.9990667,0.00014787677,0.00023915495,0.00032585437,0.00019333727,0.000027086578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037704827,0.000109446264,0.0002578711,0.00010492697,0.00016924931,0.0000035928213,0.00011970717,0.00014251504,0.00028863203],"category_scores_gemma":[0.00016908871,0.000060419927,0.00012132816,0.0002405454,0.00030136082,0.000055669323,0.00025009233,0.00017170171,0.0000075528555],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015699407,0.0002445152,0.07826349,0.00008540171,0.00012387554,8.4762526e-8,0.00013810933,0.000003481456,0.918801,0.00012066075,0.000043288164,0.0020190806],"study_design_scores_gemma":[0.00070425513,0.00012180921,0.37235484,0.000114200106,0.000040868712,0.000017449609,0.000030206547,0.0000021899543,0.6256269,0.000024465471,0.0009118385,0.000050969968],"about_ca_topic_score_codex":0.0014605634,"about_ca_topic_score_gemma":0.000061364444,"teacher_disagreement_score":0.29409134,"about_ca_system_score_codex":0.000023836134,"about_ca_system_score_gemma":0.00005028009,"threshold_uncertainty_score":0.31603184},"labels":[],"label_agreement":null},{"id":"W2503201770","doi":"10.1128/iai.00233-16","title":"Chelation of Membrane-Bound Cations by Extracellular DNA Activates the Type VI Secretion System in Pseudomonas aeruginosa","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Athabasca University; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Livestock and Meat Agency; Canada Foundation for Innovation; Alberta Innovates - Health Solutions; Cystic Fibrosis Canada; Canada Research Chairs; Government of Canada","keywords":"Pseudomonas aeruginosa; Type VI secretion system; Biology; Cystic fibrosis; Secretion; Microbiology; Extracellular; DNA; Cell biology; Bacteria; Biochemistry; Genetics; Gene; Virulence","score_opus":0.011803363053168345,"score_gpt":0.2553470358755289,"score_spread":0.24354367282236059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2503201770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99843216,0.00037430026,0.0004601487,0.00014827392,0.000076786295,0.00015889207,0.0000104673145,0.000008873588,0.00033007245],"genre_scores_gemma":[0.9989215,0.000773908,0.00000678958,0.0000054004026,0.000027928594,0.0000175174,0.000043649674,0.000005501976,0.00019780165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943715,0.00017379367,0.00013171181,0.00010102082,0.00006400318,0.00009228826],"domain_scores_gemma":[0.999604,0.000039945164,0.00006781636,0.0001695524,0.00009940478,0.000019302262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027549872,0.00006888828,0.00007663494,0.000036881585,0.00013045009,0.000014164398,0.00004608216,0.000071746574,0.000011920943],"category_scores_gemma":[0.00015395336,0.000044228105,0.000022920285,0.00010163549,0.000109666405,0.000013058826,0.000051503805,0.00006263899,0.0000029504479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004734389,0.000029093644,0.014239209,0.000026413923,0.000024059013,6.7929065e-8,0.0000672572,0.0000018009301,0.98447084,0.00007868556,0.00007223269,0.0009429816],"study_design_scores_gemma":[0.00039964027,0.00013317731,0.14651898,0.00003964259,0.000008058526,0.000005696467,0.00013262042,0.000027042508,0.8484815,0.00001815094,0.004164664,0.000070836824],"about_ca_topic_score_codex":0.00054269494,"about_ca_topic_score_gemma":0.00013067391,"teacher_disagreement_score":0.13598935,"about_ca_system_score_codex":0.00003190983,"about_ca_system_score_gemma":0.00002783926,"threshold_uncertainty_score":0.18035698},"labels":[],"label_agreement":null},{"id":"W2522573164","doi":"10.1128/iai.00751-16","title":"The Helical Shape of Campylobacter jejuni Promotes <i>In Vivo</i> Pathogenesis by Aiding Transit through Intestinal Mucus and Colonization of Crypts","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Campylobacter jejuni; Mucus; Colonization; Biology; Microbiology; Pathogenesis; In vivo; Campylobacter; Intestinal mucosa; Bacteria; Immunology; Ecology; Medicine; Internal medicine","score_opus":0.019429241989984462,"score_gpt":0.23216243500823475,"score_spread":0.21273319301825028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2522573164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99882185,0.00024359387,0.00006516193,0.00058723654,0.000043321717,0.00010528478,0.000019423365,0.000012167006,0.00010195555],"genre_scores_gemma":[0.9987856,0.0010938195,0.000015527146,0.000058886988,0.000017608165,0.000006026472,0.0000043205055,6.986821e-7,0.00001749646],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992073,0.00027234468,0.00023317094,0.00011628977,0.00004992571,0.00012095446],"domain_scores_gemma":[0.9991305,0.0006358918,0.00010464553,0.000038989114,0.00006351689,0.000026470801],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035033465,0.00007965784,0.00015450576,0.000007495429,0.00013991307,0.000010189702,0.000054549942,0.000079261066,0.00005748127],"category_scores_gemma":[0.00020443898,0.000026125754,0.000031030497,0.00014866084,0.00019405736,0.00009707645,0.000033693046,0.00005981165,5.033459e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041878913,0.000054941327,0.23463927,0.0000064895044,0.000004723091,1.231209e-7,0.00007740761,9.986705e-8,0.72719336,0.00011780882,0.000026109114,0.037837815],"study_design_scores_gemma":[0.00024199243,0.00049322826,0.9027895,0.00005948623,0.000010393755,0.000018729566,0.000095576135,0.000034405966,0.09284642,0.0007978741,0.0025241424,0.000088249864],"about_ca_topic_score_codex":0.0011121404,"about_ca_topic_score_gemma":0.0005842022,"teacher_disagreement_score":0.66815025,"about_ca_system_score_codex":0.000009385162,"about_ca_system_score_gemma":0.0000042246124,"threshold_uncertainty_score":0.1681231},"labels":[],"label_agreement":null},{"id":"W2531443355","doi":"10.1128/iai.00692-16","title":"Dynamic Interactions of a Conserved Enterotoxigenic Escherichia coli Adhesin with Intestinal Mucins Govern Epithelium Engagement and Toxin Delivery","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; U.S. Department of Veterans Affairs; CH.I.L.D. Foundation; Government of Canada; National Institutes of Health; Tulane University","keywords":"Bacterial adhesin; Enterotoxigenic Escherichia coli; Mucin; Biology; Microbiology; Toxin; Escherichia coli; Epithelium; Intestinal epithelium; Mucin 2; Enterotoxin; Biochemistry; Genetics; Gene","score_opus":0.017549262808882582,"score_gpt":0.2709968805475176,"score_spread":0.253447617738635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2531443355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974656,0.00022279569,0.0015795991,0.00014614093,0.00004482219,0.0002226178,0.000016039834,0.0000128205465,0.00028954848],"genre_scores_gemma":[0.9978085,0.0013423867,0.00036376156,0.000061022187,0.000012006481,0.000046842903,0.000005856924,0.000009998424,0.00034958887],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99924344,0.00023131564,0.00014610849,0.00016568055,0.000076140794,0.00013729799],"domain_scores_gemma":[0.9994653,0.00007546156,0.00008703331,0.00017914436,0.0001383427,0.000054702345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023848249,0.000117777585,0.00012390593,0.000042211384,0.00015271915,0.000016410919,0.000051531613,0.00004057549,0.000025751386],"category_scores_gemma":[0.00022720714,0.00008312604,0.000033262506,0.00007369327,0.00023820727,0.000013203583,0.00020344838,0.00013280367,0.0000017702708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026169675,0.000118043696,0.08337267,0.000033700257,0.000119356475,6.46271e-7,0.000084742875,6.946175e-7,0.91343755,0.000011536197,0.00005071431,0.0025086827],"study_design_scores_gemma":[0.0016681247,0.001796089,0.7476914,0.0001621059,0.000044071767,0.000035370478,0.00034481817,0.00014577019,0.24134764,0.000021383512,0.0065296316,0.00021359777],"about_ca_topic_score_codex":0.0006074362,"about_ca_topic_score_gemma":0.0015905823,"teacher_disagreement_score":0.6720899,"about_ca_system_score_codex":0.000031909938,"about_ca_system_score_gemma":0.0000562602,"threshold_uncertainty_score":0.33897817},"labels":[],"label_agreement":null},{"id":"W2533577972","doi":"10.1128/iai.00700-16","title":"Tricellular Tight Junction Protein Tricellulin Is Targeted by the Enteropathogenic Escherichia coli Effector EspG1, Leading to Epithelial Barrier Disruption","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Barrier Structure and Function Studies","field":"Neuroscience","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Child and Family Research Institute; BC Children's Hospital","funders":"Crohn's and Colitis Canada; Michael Smith Health Research BC","keywords":"Tight junction; Biology; Enteropathogenic Escherichia coli; Effector; Paracellular transport; Cell biology; Barrier function; Microbiology; Escherichia coli; Gene; Biochemistry; Permeability (electromagnetism); Membrane","score_opus":0.015864071349416496,"score_gpt":0.24066282665314404,"score_spread":0.22479875530372753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2533577972","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98358315,0.00015378786,0.012869428,0.00072543195,0.001259592,0.0007306298,0.000056793408,0.00013478153,0.00048639192],"genre_scores_gemma":[0.9941213,0.00012453576,0.00001522749,0.0009984538,0.00016887493,0.00014451367,0.0000035937937,0.0000210931,0.004402378],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821603,0.0006167943,0.00028410033,0.00038312384,0.00022425647,0.00027568554],"domain_scores_gemma":[0.9991759,0.00019184499,0.00014026584,0.00029831415,0.00006952742,0.00012416851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004141203,0.00023686267,0.00021638464,0.00013461374,0.00097015826,0.000106016785,0.00011346845,0.000112027425,0.00026587542],"category_scores_gemma":[0.00055935193,0.00013763379,0.00010866323,0.00058123335,0.00014688738,0.00029885146,0.00009466489,0.000268024,0.00023137357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020614799,0.00003805972,0.0008534157,0.000011039204,0.000015974505,7.170417e-7,0.0003939991,4.5237033e-7,0.97962433,0.000048798724,0.0017274765,0.017079597],"study_design_scores_gemma":[0.0008934431,0.00033937185,0.006077171,0.000024216251,0.000036032456,0.000011455646,0.00004359601,0.000024485254,0.8561816,0.00009293799,0.13606404,0.00021164346],"about_ca_topic_score_codex":0.00018179913,"about_ca_topic_score_gemma":0.000014481076,"teacher_disagreement_score":0.13433656,"about_ca_system_score_codex":0.00008541744,"about_ca_system_score_gemma":0.000020445725,"threshold_uncertainty_score":0.74617714},"labels":[],"label_agreement":null},{"id":"W2549639548","doi":"10.1128/iai.00654-16","title":"Systematic Analysis of Two-Component Systems in Citrobacter rodentium Reveals Positive and Negative Roles in Virulence","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Université de Montréal; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"Citrobacter rodentium; Virulence; Biology; Microbiology; Pathogen; Enterobacteriaceae; Citrobacter; Human pathogen; Enteropathogenic Escherichia coli; Escherichia coli; Type three secretion system; Bacteria; Gene; Genetics","score_opus":0.009083572628956456,"score_gpt":0.2772023839704869,"score_spread":0.2681188113415304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2549639548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99833345,0.000977808,0.00027124767,0.000021865095,0.000025777203,0.00024542803,0.000012158782,0.0000025513643,0.00010973488],"genre_scores_gemma":[0.9985469,0.0013319107,0.000011472446,0.000009906653,0.0000068764302,0.00004300338,0.000004024919,0.0000032888547,0.000042598556],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99890774,0.0005206072,0.00025510197,0.00013828561,0.000071195434,0.000107051776],"domain_scores_gemma":[0.9995272,0.00011485525,0.00010533687,0.00013749523,0.000089600246,0.00002551433],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054540194,0.0000807146,0.00027282455,0.00019595414,0.000037715177,0.000014685671,0.00003980532,0.000044880173,0.0000016724539],"category_scores_gemma":[0.0003121876,0.000057067464,0.00003652882,0.0002551271,0.00009478425,0.000010511562,0.0001061052,0.000061562736,3.6482055e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004537422,0.000059445414,0.349542,0.0004037707,0.00032826638,6.666942e-7,0.00024124316,0.000031663727,0.6491873,0.000051590785,0.0000018243029,0.00010683001],"study_design_scores_gemma":[0.00052836956,0.000104884464,0.984696,0.0008581136,0.000069871625,0.0000023123691,0.00020381105,0.00031224053,0.013112046,0.000028819853,0.0000031708255,0.00008039653],"about_ca_topic_score_codex":0.0028399753,"about_ca_topic_score_gemma":0.0020226545,"teacher_disagreement_score":0.6360753,"about_ca_system_score_codex":0.000028839517,"about_ca_system_score_gemma":0.000010877479,"threshold_uncertainty_score":0.4293212},"labels":[],"label_agreement":null},{"id":"W2551551229","doi":"10.1128/iai.00681-16","title":"Treatment with Cestode Parasite Antigens Results in Recruitment of CCR2 <sup>+</sup> Myeloid Cells, the Adoptive Transfer of Which Ameliorates Colitis","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Innovates - Health Solutions; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology; Government of Canada","keywords":"Colitis; Adoptive cell transfer; Immunology; Biology; Antigen; Inflammatory bowel disease; Immune system; Tumor necrosis factor alpha; T cell; Medicine; Internal medicine; Disease","score_opus":0.03478436852718589,"score_gpt":0.2885514593778337,"score_spread":0.25376709085064786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2551551229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997512,0.00031136573,0.00011460148,0.00027114275,0.00008875861,0.00041168396,0.00023340293,0.000015052319,0.0010420006],"genre_scores_gemma":[0.99648887,0.0028662267,0.000012391587,0.000015796239,0.0000066335697,0.000054938577,0.000033718075,0.0000066719913,0.0005147622],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990275,0.00032628293,0.00030488218,0.00014904197,0.000025831321,0.00016645525],"domain_scores_gemma":[0.9992422,0.0002803283,0.00009494266,0.00022698009,0.00013994663,0.00001559267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015283115,0.00013999229,0.00024793163,0.00010801578,0.00014968624,0.000006304768,0.000054970373,0.00010672398,0.0000855553],"category_scores_gemma":[0.00002127509,0.00007412132,0.000051731928,0.00020143145,0.0002320921,0.00010259317,0.000015436975,0.00014290748,0.000020738562],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00583462,0.0019092234,0.18512487,0.000036584395,0.0007890294,0.0000033981332,0.012788281,0.00020102186,0.7604307,0.0006880154,0.00014395465,0.032050315],"study_design_scores_gemma":[0.0034071212,0.0029464394,0.53966486,0.00015168467,0.00007283533,0.000051608433,0.0007977485,0.000009989238,0.43616182,0.000023391887,0.016580287,0.0001322441],"about_ca_topic_score_codex":0.006684535,"about_ca_topic_score_gemma":0.0037413426,"teacher_disagreement_score":0.35453996,"about_ca_system_score_codex":0.000059637976,"about_ca_system_score_gemma":0.00005302626,"threshold_uncertainty_score":0.99993},"labels":[],"label_agreement":null},{"id":"W25605771","doi":"10.1128/iai.03123-14","title":"Etude de l'électrification d'un polymère en écoulement : application au procédé d'extrusion","year":2006,"lang":"en","type":"dissertation","venue":"Infection and Immunity","topic":"Rheology and Fluid Dynamics Studies","field":"Chemical Engineering","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Humanities; Physics; Philosophy","score_opus":0.0041344774819152864,"score_gpt":0.24041546714660272,"score_spread":0.23628098966468744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W25605771","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8594363,0.00081556063,0.12322583,0.000074871365,0.00036482853,0.000494749,0.000011226323,0.00028214272,0.015294525],"genre_scores_gemma":[0.9903675,0.0011987529,0.00035428972,0.000025218023,0.00016555548,0.00026168601,0.0018739651,0.000037556616,0.0057155117],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99898064,0.00009084393,0.00032385235,0.00025205335,0.00011526505,0.00023731879],"domain_scores_gemma":[0.99938434,0.00007553934,0.00016899257,0.00023348579,0.00009252793,0.00004509744],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030141522,0.00024633415,0.00023008537,0.00014900372,0.0004054523,0.000021552542,0.00009028419,0.00048781923,0.000027423583],"category_scores_gemma":[0.00007386109,0.00025972465,0.000074164804,0.00017039417,0.000030722676,0.00008385389,0.000030248195,0.0006094657,0.000017886528],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025068002,0.0006317902,0.03154087,0.00077280187,0.00034585313,0.0000013126725,0.0033248623,0.001147275,0.79793984,0.016913824,0.00032425812,0.14680664],"study_design_scores_gemma":[0.0010803883,0.00015461181,0.7650687,0.00018254019,0.00031440737,0.000021579137,0.00039093196,0.13537076,0.09009198,0.0017237661,0.004696771,0.00090355676],"about_ca_topic_score_codex":0.0035578567,"about_ca_topic_score_gemma":0.0010471462,"teacher_disagreement_score":0.73352784,"about_ca_system_score_codex":0.00033067632,"about_ca_system_score_gemma":0.000062704086,"threshold_uncertainty_score":0.9999855},"labels":[],"label_agreement":null},{"id":"W2564089462","doi":"10.1128/iai.00781-16","title":"The Lyme Disease Pathogen Borrelia burgdorferi Infects Murine Bone and Induces Trabecular Bone Loss","year":2016,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Borrelia burgdorferi; Osteoblast; Osteoclast; Biology; Lyme disease; Bone disease; Bone mineral; Osteoid; Borrelia Burgdorferi Infection; Immunology; Osteoporosis; Anatomy; Endocrinology; In vitro; Antibody; Genetics","score_opus":0.009995167382035354,"score_gpt":0.25687184320911133,"score_spread":0.24687667582707598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2564089462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99235594,0.0054088403,0.00008487957,0.00089251134,0.0006034815,0.000149904,0.000047214613,0.00007016992,0.0003870803],"genre_scores_gemma":[0.99334633,0.0049259854,0.0000021455216,0.000120455625,0.000036020243,0.000031072177,0.000028946364,0.000010277255,0.0014987749],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99913067,0.0002238563,0.00020984352,0.00017622595,0.000025995721,0.00023341784],"domain_scores_gemma":[0.99928564,0.00023358536,0.00009551821,0.0002603792,0.00006582269,0.000059083384],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023595567,0.00015489073,0.00016935452,0.00007411462,0.000843616,0.00004953691,0.000048403548,0.00011684066,0.00017939233],"category_scores_gemma":[0.00020724132,0.000091800575,0.00006751836,0.00008566946,0.00034312753,0.00020192405,0.000094873256,0.00023637358,0.00011629622],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004417227,0.0002885776,0.08647577,0.00002210128,0.00021258056,0.000015483802,0.0002818411,5.2463474e-7,0.853937,0.001805134,0.00090976263,0.055609517],"study_design_scores_gemma":[0.0012200907,0.00023315898,0.7935881,0.00006690927,0.000071184106,0.00026875478,0.00004856245,0.0000019133977,0.013368737,0.0005676873,0.19035888,0.00020599925],"about_ca_topic_score_codex":0.0007130778,"about_ca_topic_score_gemma":0.00013356468,"teacher_disagreement_score":0.84056824,"about_ca_system_score_codex":0.000024676001,"about_ca_system_score_gemma":0.000029319923,"threshold_uncertainty_score":0.6488498},"labels":[],"label_agreement":null},{"id":"W2568226435","doi":"10.1128/iai.00905-16","title":"MUC2 Mucin and Butyrate Contribute to the Synthesis of the Antimicrobial Peptide Cathelicidin in Response to Entamoeba histolytica- and Dextran Sodium Sulfate-Induced Colitis","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Cathelicidin; Mucin; Entamoeba histolytica; Mucin 2; Biology; Goblet cell; Mucus; Antimicrobial peptides; Colitis; Microbiology; Biochemistry; Immunology; Antimicrobial; Gene expression; Epithelium","score_opus":0.017974404036918572,"score_gpt":0.2782741439714305,"score_spread":0.26029973993451194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2568226435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949013,0.000021518772,0.000017767345,0.0037643872,0.00016673768,0.00064923684,0.00004577523,0.000013513297,0.00041978023],"genre_scores_gemma":[0.99914455,0.00009609008,0.000018322538,0.0002729798,0.000023011822,0.000040110903,0.0000014441268,0.000010291172,0.0003932026],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911535,0.00025566117,0.00020926546,0.00016331382,0.00007813182,0.00017829282],"domain_scores_gemma":[0.9990373,0.00021732374,0.000099745914,0.00045179593,0.00009116602,0.0001026366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062056084,0.00013288618,0.00025234986,0.00011376185,0.00074965373,0.000055963083,0.000066486486,0.000075272714,0.000012826285],"category_scores_gemma":[0.0010136763,0.000085827,0.000045896224,0.00009972477,0.00016208149,0.000079843856,0.0001329793,0.00018850858,0.0000051602715],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003966463,0.0005718746,0.64106035,0.00008548959,0.00019468756,0.000019333715,0.0043308167,0.0000029390478,0.3341511,0.00019339501,0.00033494658,0.0150886],"study_design_scores_gemma":[0.0013958308,0.00027263587,0.9162522,0.00013996797,0.00008859983,0.000119748634,0.00013802582,0.00001763306,0.079679266,0.000017071414,0.0017960009,0.00008300513],"about_ca_topic_score_codex":0.01779052,"about_ca_topic_score_gemma":0.004822937,"teacher_disagreement_score":0.27519187,"about_ca_system_score_codex":0.000100626305,"about_ca_system_score_gemma":0.00006272065,"threshold_uncertainty_score":0.9887501},"labels":[],"label_agreement":null},{"id":"W2587504266","doi":"10.1128/iai.01063-16","title":"Protective Role of Passively Transferred Maternal Cytokines against Bordetella pertussis Infection in Newborn Piglets","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"Canadian Institutes of Health Research; Krembil Foundation; Government of Canada; Bill and Melinda Gates Foundation","keywords":"Bordetella pertussis; Immunology; Antibody; Biology; Immune system; Cytokine; Vaccination; Colostrum; Tumor necrosis factor alpha; Immunity; Immunization; Interleukin 10; Proinflammatory cytokine; Inflammation; Bacteria","score_opus":0.014509565428889811,"score_gpt":0.2545134367923868,"score_spread":0.240003871363497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587504266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674976,0.000117569594,0.0001500652,0.00011838207,0.0007294319,0.0003195571,0.000023283437,0.000054159453,0.0017377698],"genre_scores_gemma":[0.9990548,0.00066110736,0.000008865524,0.000012214734,0.000043324922,0.00005251222,0.000018737557,0.000013273638,0.00013518048],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99903363,0.00023478498,0.00031418912,0.00019579408,0.000017757471,0.00020382227],"domain_scores_gemma":[0.9992935,0.00003348904,0.0002157676,0.00030481868,0.00013117201,0.00002123332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021618699,0.0001838012,0.00029994638,0.00021627551,0.00066357624,0.00006913477,0.000093939176,0.0002632929,0.00013992567],"category_scores_gemma":[0.00014175054,0.00014836168,0.000090766036,0.000094765885,0.00018391175,0.00036639356,0.00007166641,0.00035420104,0.000019087141],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020215973,0.0001742055,0.32408735,0.000024223882,0.000069505935,3.2548408e-7,0.00026122082,0.00000456981,0.59264743,0.00005599784,0.000012536369,0.082460456],"study_design_scores_gemma":[0.0011978552,0.00022502817,0.8174794,0.000065097505,0.0000200111,0.000030895397,0.000037658716,0.000012849502,0.17200907,0.00022969034,0.008556073,0.00013638787],"about_ca_topic_score_codex":0.035169348,"about_ca_topic_score_gemma":0.004647443,"teacher_disagreement_score":0.49339205,"about_ca_system_score_codex":0.000040439314,"about_ca_system_score_gemma":0.000033463348,"threshold_uncertainty_score":0.97125554},"labels":[],"label_agreement":null},{"id":"W2599078623","doi":"10.1128/iai.00942-16","title":"Bile Acid Administration Elicits an Intestinal Antimicrobial Program and Reduces the Bacterial Burden in Two Mouse Models of Enteric Infection","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Digestive system and related health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; Université de Sherbrooke","funders":"Crohn's and Colitis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Chenodeoxycholic acid; Biology; Bile acid; Farnesoid X receptor; Microbiology; Ileum; Antimicrobial; Paneth cell; Salmonella enterica; Immune system; Deoxycholic acid; Immunology; Salmonella; Biochemistry; Bacteria; Small intestine; Nuclear receptor","score_opus":0.02424930019683387,"score_gpt":0.3316927508518778,"score_spread":0.30744345065504397,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2599078623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989645,0.000029804518,0.000077342665,0.000057005014,0.00019026494,0.00028590622,0.000006364295,0.000011050674,0.00037777238],"genre_scores_gemma":[0.9992923,0.00043289678,0.000039515824,0.000009061953,0.000108653214,0.000017489816,0.000058511385,0.0000060468346,0.000035501493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999415,0.00015516941,0.00017057311,0.0001306804,0.000035769823,0.00009284126],"domain_scores_gemma":[0.9995452,0.0000048213396,0.00016187597,0.00018384677,0.00007010227,0.00003414896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026874122,0.000084476356,0.000096052936,0.00003770144,0.00027639364,0.00008309563,0.000053688633,0.00007958387,0.00000228183],"category_scores_gemma":[0.000057717232,0.000059087808,0.000021653292,0.000030745206,0.00015043259,0.000035073193,0.00006034806,0.00011177153,3.4799677e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017150224,0.00016038971,0.019335847,0.000035842764,0.000014283892,2.871472e-7,0.00019913605,0.0000315822,0.9620304,0.000023006232,0.000009756819,0.017987978],"study_design_scores_gemma":[0.0015864857,0.0023516032,0.29226002,0.00012951033,0.000024372845,0.00013300595,0.000089274814,0.0009105831,0.7011824,0.00006541182,0.001066445,0.00020087282],"about_ca_topic_score_codex":0.0036507952,"about_ca_topic_score_gemma":0.00081802846,"teacher_disagreement_score":0.27292415,"about_ca_system_score_codex":0.000008383501,"about_ca_system_score_gemma":0.000048834692,"threshold_uncertainty_score":0.5518935},"labels":[],"label_agreement":null},{"id":"W2605370362","doi":"10.1128/iai.00975-16","title":"The Agr-Like Quorum Sensing System Is Required for Pathogenesis of Necrotic Enteritis Caused by Clostridium perfringens in Poultry","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Agriculture and Agri-Food Canada","funders":"","keywords":"Clostridium perfringens; Enteritis; Biology; Quorum sensing; Microbiology; Pathogenesis; Clostridium Infections; Virulence; Immunology; Bacteria; Antibiotics; Clostridium difficile","score_opus":0.03182261706368375,"score_gpt":0.30774861050920843,"score_spread":0.2759259934455247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605370362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99655914,0.00062522496,0.000067509565,0.0009976886,0.0003377039,0.00075274456,0.00009891872,0.00003969079,0.00052135065],"genre_scores_gemma":[0.9981113,0.001106408,0.000021032016,0.000048524667,0.00009055885,0.000027628035,0.000028981396,0.000028165405,0.00053740444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848676,0.00014193644,0.00045911552,0.00026304304,0.00024392828,0.00040521604],"domain_scores_gemma":[0.99841976,0.00021163795,0.00022857629,0.0007377632,0.00027777738,0.00012447101],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00070635066,0.00019576395,0.0003941359,0.00012183012,0.001339419,0.00018609893,0.00013505529,0.000167039,0.000011663277],"category_scores_gemma":[0.00036476407,0.00016080287,0.00015884123,0.00013019216,0.00029461615,0.00011251751,0.00014660286,0.0003049522,0.0000048346756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006454834,0.00022223417,0.056203526,0.00071619893,0.00013914626,0.000014785662,0.00052466866,8.172504e-7,0.9112085,0.00003132021,0.0017546902,0.028538616],"study_design_scores_gemma":[0.0063885227,0.0011072338,0.22259481,0.0009864058,0.00021289101,0.00020864194,0.0032280043,0.0012818163,0.74346536,0.00001557529,0.020089302,0.00042143007],"about_ca_topic_score_codex":0.0051056915,"about_ca_topic_score_gemma":0.0002910628,"teacher_disagreement_score":0.16774315,"about_ca_system_score_codex":0.00019185188,"about_ca_system_score_gemma":0.00014230469,"threshold_uncertainty_score":0.9999607},"labels":[],"label_agreement":null},{"id":"W2646336719","doi":"10.1128/iai.00068-17","title":"Identification and Characterization of Two Klebsiella pneumoniae <i>lpxL</i> Lipid A Late Acyltransferases and Their Role in Virulence","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; National Health and Medical Research Council; Department for Employment and Learning, Northern Ireland; European Commission; Queen's University; Queen's University Belfast; Research Councils UK","keywords":"Lipid A; Virulence; Biology; Microbiology; Klebsiella pneumoniae; Pathogen; Escherichia coli; Serratia marcescens; Lipopolysaccharide; Biochemistry; Gene; Immunology","score_opus":0.007832628902313114,"score_gpt":0.24735979398711333,"score_spread":0.2395271650848002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2646336719","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99920267,0.00008641017,0.00037567533,0.000046081914,0.00006794694,0.00009786556,0.0000151110835,0.000004349337,0.00010389921],"genre_scores_gemma":[0.9962282,0.0036326188,0.000007509411,0.000020222944,0.000023475879,0.000002884633,0.00002728111,0.000005513308,0.000052302865],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99957794,0.000057421836,0.00013906781,0.00013413056,0.0000245482,0.00006688991],"domain_scores_gemma":[0.9996098,0.000008085439,0.000104702915,0.00022037783,0.000035543893,0.000021482194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015899035,0.00007581052,0.00009332679,0.000028769373,0.00015135162,0.000068337984,0.000049807135,0.000059517602,0.00000216244],"category_scores_gemma":[0.00004345316,0.000070917835,0.000013380007,0.000021269161,0.00014932679,0.000027193653,0.00005078605,0.000055986588,3.3104558e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023585837,0.000020332653,0.23465306,0.000020357416,0.0000054370435,6.436485e-8,0.000089503716,3.413447e-7,0.7603741,0.000016133094,4.269106e-7,0.004796631],"study_design_scores_gemma":[0.00019914248,0.00003788599,0.62546384,0.000024434756,0.0000032822247,0.0000039279153,0.000016711825,0.00005876332,0.37387678,0.000049617567,0.00021620949,0.000049397866],"about_ca_topic_score_codex":0.00026625514,"about_ca_topic_score_gemma":0.00019413208,"teacher_disagreement_score":0.3908108,"about_ca_system_score_codex":0.0000032868843,"about_ca_system_score_gemma":0.000009639966,"threshold_uncertainty_score":0.28919455},"labels":[],"label_agreement":null},{"id":"W2707994610","doi":"10.1128/iai.00322-17","title":"Regulation of Type III Secretion of Translocon and Effector Proteins by the EsaB/EsaL/EsaM Complex in Edwardsiella tarda","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Natural Science Foundation of China","keywords":"Edwardsiella tarda; Effector; Biology; Type three secretion system; Secretion; Microbiology; Translocon; Enteropathogenic Escherichia coli; Yersinia; Bacteria; Pathogenicity island; Mutant; Escherichia coli; Cell biology; Salmonella; Membrane protein; Genetics; Gene; Biochemistry","score_opus":0.02006354388378724,"score_gpt":0.2950370000294181,"score_spread":0.27497345614563085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2707994610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989485,0.00019078805,0.0001329435,0.0001325752,0.000037377296,0.00029849788,0.000012153279,0.000002531498,0.00024463597],"genre_scores_gemma":[0.9992634,0.00058044016,0.000020549152,0.000006393531,0.000017834649,0.000011182769,0.000046400466,0.0000041290878,0.00004964203],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999558,0.00013251684,0.00010345443,0.00008388409,0.000054220567,0.00006797111],"domain_scores_gemma":[0.99959683,0.000014602556,0.000092718,0.0002050302,0.000075293065,0.00001552646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000281959,0.000060647097,0.00010591271,0.000022291006,0.00015455086,0.00001599648,0.00005243058,0.000059561593,0.0000086710115],"category_scores_gemma":[0.0001368376,0.000046742585,0.000020685038,0.000029140354,0.00022901704,0.000008027993,0.000070779744,0.000069512374,2.105567e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016238276,0.000030299536,0.01904212,0.000054004442,0.000023105584,2.8886511e-8,0.00010760701,0.0000019831134,0.97665626,0.000006677744,0.000118185824,0.0037973279],"study_design_scores_gemma":[0.00060988276,0.00032802092,0.62647086,0.000021218997,0.000005966795,0.0000016298951,0.00002445094,0.0000749185,0.36998704,0.000023106517,0.002410162,0.00004273152],"about_ca_topic_score_codex":0.0019424262,"about_ca_topic_score_gemma":0.00047246247,"teacher_disagreement_score":0.6074287,"about_ca_system_score_codex":0.000005993301,"about_ca_system_score_gemma":0.000014634345,"threshold_uncertainty_score":0.29363805},"labels":[],"label_agreement":null},{"id":"W2723554628","doi":"10.1128/iai.00223-17","title":"Reply to Vicetti Miguel et al., “Setting Sights on Chlamydia Immunity's Central Paradigm: Can We Hit a Moving Target?”","year":2017,"lang":"en","type":"letter","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; NIH Office of the Director; National Institutes of Health","keywords":"Biology; Sight; Chlamydia; Epistemology; Philosophy; Immunology; Physics; Astronomy","score_opus":0.028191750935652585,"score_gpt":0.30673636320818803,"score_spread":0.27854461227253546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2723554628","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26590794,0.0011981769,0.00012220445,0.71438587,0.004526613,0.0016404743,0.00022386744,0.00044502082,0.01154981],"genre_scores_gemma":[0.42802286,0.0019295862,0.00010536076,0.543676,0.0014005336,0.0004483921,0.002362391,0.00026981765,0.021785025],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9941409,0.0026635893,0.0006688155,0.0010772962,0.00019069234,0.0012586974],"domain_scores_gemma":[0.9959357,0.00079242035,0.00054164126,0.0023086367,0.00031548255,0.00010616776],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015760658,0.0007700758,0.0008450696,0.0012140332,0.0027721948,0.00039718839,0.00062854093,0.0011197119,0.00067410176],"category_scores_gemma":[0.0015451844,0.00074254005,0.00031229373,0.00038637756,0.0005171828,0.0004184098,0.00046948314,0.009183083,0.00074533233],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023224062,0.00044284147,0.006237586,0.00018093835,0.00089324074,0.00008722001,0.001771638,0.000038283277,0.022422554,0.00016456425,0.9586305,0.008898389],"study_design_scores_gemma":[0.000777406,0.00049922493,0.06551091,0.00033264537,0.000062827814,0.00038374637,0.00004447296,0.0000026936402,0.008303951,0.00035144427,0.9230251,0.0007055917],"about_ca_topic_score_codex":0.022016164,"about_ca_topic_score_gemma":0.00030692425,"teacher_disagreement_score":0.17070986,"about_ca_system_score_codex":0.000511062,"about_ca_system_score_gemma":0.00038161932,"threshold_uncertainty_score":0.99950254},"labels":[],"label_agreement":null},{"id":"W2728511876","doi":"10.1128/iai.00371-17","title":"<i>S</i>-Nitrosoglutathione Reductase Deficiency Confers Improved Survival and Neurological Outcome in Experimental Cerebral Malaria","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute; Defense Advanced Research Projects Agency; Canadian Institutes of Health Research; National Institutes of Health; Government of Canada","keywords":"Biology; Cerebral Malaria; Malaria; S-Nitrosoglutathione; Immunology; Internal medicine; Plasmodium falciparum; Enzyme; Biochemistry; Medicine","score_opus":0.039463611118410805,"score_gpt":0.32954266178627606,"score_spread":0.29007905066786527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2728511876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941236,0.0001265004,0.000028030654,0.0022087968,0.00019830912,0.00033391442,0.00000475631,0.000030488252,0.0029456168],"genre_scores_gemma":[0.99953485,0.00005604878,0.000035160134,0.00017916439,0.00004384598,0.000022659839,0.000008147584,0.0000073519022,0.000112747235],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990854,0.00015503008,0.00019654665,0.00020080972,0.000116455165,0.00024575353],"domain_scores_gemma":[0.99938244,0.000041979016,0.00006774975,0.00029681312,0.000044458375,0.00016655539],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045657554,0.000121510326,0.00024132754,0.00008083045,0.00041604656,0.0001252298,0.000064266584,0.000101182486,0.00013010726],"category_scores_gemma":[0.0005250907,0.000100213765,0.00004277297,0.00003922491,0.00027727216,0.00018620442,0.00014359647,0.0005001865,0.000004548296],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012423611,0.0004943814,0.8251069,0.000036016994,0.000017852837,0.000041329276,0.00012340638,2.4620488e-7,0.1674723,0.0030420441,0.000014990814,0.002408147],"study_design_scores_gemma":[0.0045577404,0.0008590574,0.9913704,0.000007858433,0.000014398201,0.00010152126,0.00012310661,0.000864013,0.0017712604,0.000095719144,0.00013805019,0.00009687516],"about_ca_topic_score_codex":0.0027025328,"about_ca_topic_score_gemma":0.000081594975,"teacher_disagreement_score":0.16626348,"about_ca_system_score_codex":0.000022245238,"about_ca_system_score_gemma":0.000042183136,"threshold_uncertainty_score":0.40865988},"labels":[],"label_agreement":null},{"id":"W2735521500","doi":"10.1128/iai.00031-17","title":"<i>In Vivo</i>Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cancer Care Ontario; Public Health Ontario; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Stiftelsen för Strategisk Forskning; VINNOVA; Stiftelsen Assar Gabrielssons Fond; Knut och Alice Wallenbergs Stiftelse; Vetenskapsrådet","keywords":"Biology; Helicobacter pylori; Transcriptome; Helicobacter; Microbiology; Gastritis; Cancer; Stomach; Carcinogenesis; Gastric mucosa; Gene; Immunology; Gene expression; Genetics","score_opus":0.01584088325051463,"score_gpt":0.2572071993784615,"score_spread":0.24136631612794684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2735521500","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99896145,0.00024818358,0.000011193354,0.0003265155,0.0001268419,0.00021061281,0.000017726426,0.0000072660173,0.00009020496],"genre_scores_gemma":[0.9982387,0.0015973952,0.0000092485225,0.000065185086,0.000009977395,0.000008332904,0.0000014936622,0.0000071101367,0.000062575804],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99914134,0.00014603036,0.00032037043,0.00016344264,0.00007015685,0.00015863961],"domain_scores_gemma":[0.9993189,0.00004021087,0.00018728171,0.00031335908,0.00010106914,0.000039156705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032487532,0.00013133723,0.00044960214,0.00048430057,0.0001624056,0.000020638869,0.000044857326,0.00011072659,0.000013577752],"category_scores_gemma":[0.000101405814,0.00010318293,0.00007364906,0.0003960697,0.00032243662,0.00020316683,0.00008601172,0.00025618428,1.929433e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000927928,0.00009630571,0.81925166,0.00006902329,0.0003617994,7.8624436e-7,0.0007197852,0.0000030878132,0.17909022,0.0000025820787,0.0000053447566,0.00030659806],"study_design_scores_gemma":[0.0014410214,0.00025220317,0.98478127,0.000076081626,0.0005983288,0.000017550414,0.000040224488,0.000017558787,0.012562745,0.0000053703457,0.0001505395,0.000057133508],"about_ca_topic_score_codex":0.021208607,"about_ca_topic_score_gemma":0.004612609,"teacher_disagreement_score":0.16652746,"about_ca_system_score_codex":0.000035811823,"about_ca_system_score_gemma":0.00001446405,"threshold_uncertainty_score":0.98530924},"labels":[],"label_agreement":null},{"id":"W2735800753","doi":"10.1128/iai.00277-08","title":"Coinfection with <i>Heligmosomoides polygyrus</i> Fails To Establish CD8 <sup>+</sup> T-Cell Immunity against <i>Toxoplasma gondii</i>","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; Medical Research Council Canada; George Washington University","keywords":"Heligmosomoides polygyrus; Biology; Coinfection; Toxoplasma gondii; Immunity; Immunology; Virology; CD8; Microbiology; Immune system; Human immunodeficiency virus (HIV); Antibody","score_opus":0.013050651302492089,"score_gpt":0.2283199222089055,"score_spread":0.21526927090641343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2735800753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9833857,0.0008345653,0.0003177448,0.00025519385,0.00038470907,0.0007641613,0.00007785678,0.00044841142,0.013531663],"genre_scores_gemma":[0.99276006,0.0025447148,0.00011924649,0.00059671426,0.00005948793,0.00014718637,0.00017581639,0.00005320846,0.0035435674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970674,0.00088095653,0.0004898758,0.0005400328,0.00015311762,0.00086865266],"domain_scores_gemma":[0.9980832,0.00047766377,0.00018545674,0.0007067238,0.00038786765,0.00015909612],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00063794124,0.00053002225,0.0006050098,0.00049921067,0.00254452,0.00012850513,0.00026384662,0.00039485234,0.00020963435],"category_scores_gemma":[0.00041660405,0.00046427347,0.00014525127,0.0008821261,0.0008451767,0.00081113674,0.00042558004,0.001462944,0.0007026027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020060786,0.002297983,0.25074854,0.0002659836,0.0009104126,0.000063968684,0.010619369,0.001402755,0.6789695,0.00017471489,0.03618124,0.01635945],"study_design_scores_gemma":[0.0074161673,0.0036248094,0.15395421,0.000204025,0.0001420389,0.0015130717,0.0034727748,0.000061779916,0.48986474,0.000060031387,0.3380627,0.0016236667],"about_ca_topic_score_codex":0.006144926,"about_ca_topic_score_gemma":0.0008682183,"teacher_disagreement_score":0.30188146,"about_ca_system_score_codex":0.00019604381,"about_ca_system_score_gemma":0.00019249707,"threshold_uncertainty_score":0.9997809},"labels":[],"label_agreement":null},{"id":"W2739742752","doi":"10.1128/iai.00074-17","title":"Genetic Evidence for Erythrocyte Receptor Glycophorin B Expression Levels Defining a Dominant Plasmodium falciparum Invasion Pathway into Human Erythrocytes","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; Government of Canada; National Institutes of Health; Canadian Institutes of Health Research; Harvard Global Health Institute; Wellcome Trust","keywords":"Glycophorin; Biology; Plasmodium falciparum; Receptor; Sialic acid; Cell biology; Molecular biology; Genetics; Immunology; Malaria; Antigen","score_opus":0.08684191189211751,"score_gpt":0.35940018199209944,"score_spread":0.2725582700999819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2739742752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943274,0.000790153,0.002691302,0.0006746057,0.00030316674,0.0008538438,0.0000103928605,0.0000517932,0.0002973397],"genre_scores_gemma":[0.9974777,0.0005911008,0.001089024,0.00007572381,0.0001750951,0.00024098047,0.000016894694,0.000022455515,0.00031103342],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986211,0.00014879795,0.00031337384,0.0003237611,0.00023815662,0.00035477802],"domain_scores_gemma":[0.9984081,0.00025901353,0.00021763987,0.0006732303,0.00022098582,0.00022102482],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00066811393,0.00020358962,0.00035068928,0.00013278078,0.0020736333,0.00020981906,0.00016140631,0.00016695999,0.00015378461],"category_scores_gemma":[0.0017177663,0.00016738007,0.00012104145,0.000055691686,0.00019130437,0.0004076815,0.00025154586,0.00037533717,0.000030575087],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018199059,0.00015875566,0.026283452,0.00032930536,0.000044448934,0.0000062032423,0.00044027413,0.0000015458836,0.94602925,0.00023816711,0.00056131085,0.024087384],"study_design_scores_gemma":[0.0058605215,0.0021460552,0.5193783,0.0011831725,0.000058997168,0.000052391195,0.0001436828,0.0004343855,0.46344462,0.0006661402,0.006351014,0.00028074306],"about_ca_topic_score_codex":0.0021095728,"about_ca_topic_score_gemma":0.00031242712,"teacher_disagreement_score":0.49309483,"about_ca_system_score_codex":0.00011570005,"about_ca_system_score_gemma":0.00016441017,"threshold_uncertainty_score":0.99922556},"labels":[],"label_agreement":null},{"id":"W2741341678","doi":"10.1128/iai.00434-17","title":"Streptococcus pneumoniae Colonization Is Required To Alter the Nasal Microbiota in Cigarette Smoke-Exposed Mice","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University Medical Centre; Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Dysbiosis; Biology; Colonisation resistance; Microbiology; Streptococcus pneumoniae; Colonization; Fusobacterium; Immunology; Pathogen; Microbiome; Gut flora; Bacteria; Antibiotics; Bacteroides","score_opus":0.03463722114741968,"score_gpt":0.31409010788692787,"score_spread":0.2794528867395082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2741341678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990319,0.000022254193,0.000044601067,0.0066904407,0.0004659602,0.0006084483,0.000008581192,0.000051569037,0.0017891255],"genre_scores_gemma":[0.9961495,0.00008191936,0.0000026585792,0.0031677147,0.00009451705,0.000047560945,0.000009328224,0.000014761372,0.00043208292],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991522,0.00011980734,0.00023789764,0.00019724834,0.00009555869,0.00019728804],"domain_scores_gemma":[0.9990329,0.000044248565,0.00012415854,0.0005833782,0.00012026507,0.000095037016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029033,0.00014286139,0.00018643176,0.00014327286,0.00097456464,0.0001347183,0.000104531726,0.0001338159,0.0000743809],"category_scores_gemma":[0.00022884054,0.00010822691,0.00006330449,0.00017139528,0.00014734526,0.00018329606,0.00010607149,0.0003785196,0.000031947176],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038098537,0.00014966003,0.56071055,0.000022546965,0.000041333493,0.000005342615,0.0009416245,0.0000044903495,0.43440458,0.000022369883,0.0007700562,0.002889341],"study_design_scores_gemma":[0.00097039,0.00027066798,0.94674593,0.000081339815,0.00003765672,0.00003293145,0.000059481143,0.000073417825,0.023672335,0.000020505739,0.027913244,0.00012206909],"about_ca_topic_score_codex":0.0010581478,"about_ca_topic_score_gemma":0.0006630651,"teacher_disagreement_score":0.41073224,"about_ca_system_score_codex":0.00008983156,"about_ca_system_score_gemma":0.00006553565,"threshold_uncertainty_score":0.74956614},"labels":[],"label_agreement":null},{"id":"W2748411395","doi":"10.1128/iai.00338-17","title":"Listeria monocytogenes and Shigella flexneri Activate the NLRP1B Inflammasome","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Inflammasome; Shigella flexneri; Listeria monocytogenes; Biology; Microbiology; Shigella; Pyroptosis; Innate immune system; Listeriolysin O; Listeria; Intracellular parasite; Phagolysosome; Immune system; Inflammation; Immunology; Bacteria; Salmonella; Phagosome; Phagocytosis; Biochemistry","score_opus":0.018855373886667203,"score_gpt":0.2772145196545857,"score_spread":0.2583591457679185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748411395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948148,0.0005368991,0.000044430795,0.00027570451,0.00022624563,0.00012211355,0.0000029681853,0.000012100693,0.0039646956],"genre_scores_gemma":[0.9963132,0.002721196,0.000011540292,0.0001393315,0.000101521655,0.000014951794,0.000018363238,0.000011567175,0.00066831894],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99946016,0.00007723403,0.00011831772,0.00015412395,0.000043762713,0.00014638942],"domain_scores_gemma":[0.99927735,0.000009018552,0.00010501544,0.0005286531,0.000045035747,0.000034927172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020278346,0.00012813335,0.00009755171,0.000022598852,0.0010875586,0.00020654731,0.00013738581,0.00010673994,0.000016992197],"category_scores_gemma":[0.0000989013,0.0000971039,0.000044421027,0.00001964317,0.00026113843,0.000022123937,0.00028899024,0.0001204549,0.0000057453403],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020950622,0.000033612305,0.080994874,0.000024573905,0.00009037995,7.980868e-7,0.00027553286,0.000004355406,0.8788956,0.00017437851,0.00021622966,0.03908015],"study_design_scores_gemma":[0.0006133662,0.0002233687,0.60752684,0.000010899685,0.000018710894,0.000026138414,0.00014873888,0.000022513119,0.24815996,0.00017096056,0.14287966,0.000198851],"about_ca_topic_score_codex":0.0004979689,"about_ca_topic_score_gemma":0.00017292715,"teacher_disagreement_score":0.63073564,"about_ca_system_score_codex":0.000004602357,"about_ca_system_score_gemma":0.000018909343,"threshold_uncertainty_score":0.83647317},"labels":[],"label_agreement":null},{"id":"W2752468585","doi":"10.1128/iai.00557-17","title":"Characterization of Two Novel Lipopolysaccharide Phosphoethanolamine Transferases in Pasteurella multocida and Their Role in Resistance to Cathelicidin-2","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Australian Research Council; Monash University","keywords":"Pasteurella multocida; Biology; Cathelicidin; Lipopolysaccharide; Microbiology; Pasteurella; Bacteria; Immunology; Antimicrobial; Genetics; Antimicrobial peptides","score_opus":0.018186507439983537,"score_gpt":0.28002702228688797,"score_spread":0.26184051484690446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752468585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985848,0.00034761208,0.0002321837,0.000111330235,0.000103400234,0.00028259808,0.00006848749,0.000012919032,0.0002566842],"genre_scores_gemma":[0.99906194,0.00060978316,0.000005901656,0.000032994674,0.000008898556,0.000026908328,0.000027334769,0.000007847067,0.0002183705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993126,0.000111036905,0.00022145019,0.00016825287,0.000016448976,0.00017020892],"domain_scores_gemma":[0.99954075,0.00005559568,0.00007057091,0.00024854584,0.000058011723,0.000026504631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028666746,0.00011503512,0.0002092195,0.00020790154,0.0002589738,0.00003717443,0.00007723331,0.00009836515,0.000059563637],"category_scores_gemma":[0.00011075221,0.00010457397,0.000030054262,0.000095803756,0.00014380938,0.00015682676,0.000073012656,0.00022388565,0.0000057368156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016134078,0.00023318232,0.07062112,0.000027544447,0.000014325123,2.660666e-7,0.000784069,0.0000017293211,0.92386174,0.000229155,0.0000021283774,0.0040633897],"study_design_scores_gemma":[0.0011392392,0.00007149249,0.3711599,0.00007496837,0.000003713981,0.000005729805,0.00007517158,0.000007527961,0.62670356,0.000039188508,0.0006388268,0.000080681035],"about_ca_topic_score_codex":0.016040679,"about_ca_topic_score_gemma":0.013169194,"teacher_disagreement_score":0.3005388,"about_ca_system_score_codex":0.000026305688,"about_ca_system_score_gemma":0.00002873739,"threshold_uncertainty_score":0.9905116},"labels":[],"label_agreement":null},{"id":"W2756437412","doi":"10.1128/iai.00373-17","title":"Hyperbiofilm Formation by Bordetella pertussis Strains Correlates with Enhanced Virulence Traits","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Agencia Nacional de Promoción Científica y Tecnológica; Ministerio de Ciencia, Tecnología e Innovación Productiva; Consejo Nacional de Investigaciones Científicas y Técnicas; International Union of Biochemistry and Molecular Biology","keywords":"Biofilm; Bordetella pertussis; Microbiology; Biology; Colonization; Virulence; Pathogen; Obligate; Human pathogen; Whooping cough; Bacteria; Bordetella; Virology; Vaccination; Gene; Genetics","score_opus":0.012903745248483436,"score_gpt":0.24362347186899327,"score_spread":0.23071972662050982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2756437412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99468344,0.00021124855,0.0009242949,0.00011814634,0.0004554293,0.00013792608,0.000028875917,0.000078330864,0.0033623183],"genre_scores_gemma":[0.9984215,0.0006591218,0.000013190098,0.000036635043,0.00002008948,0.000017216396,0.00006033248,0.000008587275,0.00076331815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943894,0.000087481116,0.00015367917,0.00013845434,0.000011795115,0.0001696469],"domain_scores_gemma":[0.99948245,0.000030727457,0.00015811365,0.00022778813,0.00007971515,0.000021217766],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00011794245,0.00013934785,0.00015632508,0.000050226095,0.0014706689,0.0001201446,0.0000863756,0.00017049436,0.00036286988],"category_scores_gemma":[0.000064934655,0.00010810864,0.000035682566,0.00004261939,0.00017542318,0.00055940286,0.00004259327,0.0002486926,0.00006859537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006701611,0.00009235668,0.004069264,0.000012446555,0.000049514896,8.817842e-8,0.00026495548,7.3270974e-7,0.95349085,0.00008972562,0.00044791622,0.04141512],"study_design_scores_gemma":[0.0017092177,0.0006227046,0.47128138,0.000062731415,0.00005454728,0.00013645398,0.0001655624,0.000018101768,0.5013846,0.000054765573,0.024218962,0.00029093216],"about_ca_topic_score_codex":0.0012996118,"about_ca_topic_score_gemma":0.00034511613,"teacher_disagreement_score":0.46721214,"about_ca_system_score_codex":0.000018314846,"about_ca_system_score_gemma":0.000015967773,"threshold_uncertainty_score":0.9998293},"labels":[],"label_agreement":null},{"id":"W2760324544","doi":"10.1128/iai.00546-17","title":"Killing of Pseudomonas aeruginosa by Chicken Cathelicidin-2 Is Immunogenically Silent, Preventing Lung Inflammation <i>In Vivo</i>","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Cathelicidin; Biology; Pseudomonas aeruginosa; Microbiology; Inflammation; In vivo; Chemokine; TLR2; TLR4; Proinflammatory cytokine; Immunology; Cytokine; Antimicrobial; Antimicrobial peptides; Bacteria","score_opus":0.010693696587406145,"score_gpt":0.2500554312025993,"score_spread":0.23936173461519317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2760324544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654984,0.0007936041,0.00017388418,0.00013623228,0.00029206774,0.00017433934,0.000035335597,0.000028114566,0.0018165597],"genre_scores_gemma":[0.9974743,0.001437664,0.000027343127,0.000048153874,0.000022098877,0.000007420644,0.000027188895,0.000010718553,0.00094511197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910474,0.00014195859,0.0003517959,0.00016551468,0.000027224503,0.00020877073],"domain_scores_gemma":[0.9991362,0.00007637558,0.00038615384,0.00033031288,0.000057775494,0.00001317736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038279014,0.00014846984,0.00025992724,0.00007569169,0.0006961132,0.00005605573,0.00015209247,0.00018929482,0.00020007214],"category_scores_gemma":[0.000091262504,0.00014646628,0.00009571483,0.00004271962,0.00026905822,0.00037293675,0.00015699398,0.00033388502,0.00001324165],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052939075,0.00008498296,0.04901448,0.000047484406,0.00006831398,2.6646723e-7,0.0007077518,0.000002999186,0.944209,0.00009032811,0.0006120784,0.0051094145],"study_design_scores_gemma":[0.0009239231,0.00007044667,0.03869883,0.00016063303,0.00003308342,0.000020709664,0.00014140375,0.000034371344,0.95414466,0.00009657686,0.0054968246,0.00017855458],"about_ca_topic_score_codex":0.007138369,"about_ca_topic_score_gemma":0.00016970225,"teacher_disagreement_score":0.010315647,"about_ca_system_score_codex":0.000026685915,"about_ca_system_score_gemma":0.000024186422,"threshold_uncertainty_score":0.99947315},"labels":[],"label_agreement":null},{"id":"W2762065625","doi":"10.1128/iai.00556-17","title":"Acquired Protective Immunity in Atlantic Salmon Salmo salar against the Myxozoan Kudoa thyrsites Involves Induction of MHIIβ <sup>+</sup> CD83 <sup>+</sup> Antigen-Presenting Cells","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Myxozoan Parasites in Aquatic Species","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada; University of Prince Edward Island","funders":"Fisheries and Oceans Canada; Natural Sciences and Engineering Research Council of Canada; Elanco Animal Health","keywords":"Biology; Immune system; Salmo; Antigen; Parasite hosting; Immunity; Population; Cytotoxic T cell; Ichthyophthirius multifiliis; Acquired immune system; Immunology; Microbiology; CD8; Virology; Fishery; Fish <Actinopterygii>; In vitro","score_opus":0.020580729858448686,"score_gpt":0.27168878462182633,"score_spread":0.25110805476337766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2762065625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961213,0.00038714777,0.00022704882,0.00010472974,0.0001830384,0.00079685,0.000017800425,0.00003669882,0.002125407],"genre_scores_gemma":[0.997983,0.001258152,0.00014117241,0.000066662666,0.00020856535,0.00005122898,0.00010104425,0.000038389717,0.00015182266],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975021,0.0008122771,0.0005651593,0.00044042472,0.00026128226,0.00041876233],"domain_scores_gemma":[0.99758726,0.00014157954,0.00054623483,0.0014054956,0.00023832859,0.000081095175],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012083558,0.00036790315,0.00041536003,0.00020328179,0.0011785517,0.00020430396,0.00056563964,0.0003485671,0.0000382502],"category_scores_gemma":[0.0012173158,0.0003163801,0.00017551397,0.0002385853,0.00078304665,0.000088403416,0.00065923773,0.00051633036,0.00001334339],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001679073,0.00030255836,0.41160157,0.00011298663,0.00019058374,0.000003091016,0.0024336854,0.001633599,0.5802865,0.000061766914,0.00017880271,0.0030269113],"study_design_scores_gemma":[0.0011907514,0.00032783905,0.5860776,0.00016824562,0.000051482813,0.000030265119,0.0022499496,0.0045071477,0.4025655,0.0002836685,0.0020917142,0.0004558279],"about_ca_topic_score_codex":0.005477183,"about_ca_topic_score_gemma":0.00040268613,"teacher_disagreement_score":0.17772101,"about_ca_system_score_codex":0.000063823085,"about_ca_system_score_gemma":0.00008950412,"threshold_uncertainty_score":0.99992883},"labels":[],"label_agreement":null},{"id":"W2768811135","doi":"10.1128/iai.00614-17","title":"B Cell Presentation of Chlamydia Antigen Selects Out Protective CD4γ13 T Cells: Implications for Genital Tract Tissue-Resident Memory Lymphocyte Clusters","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Chlamydia; Genital tract; Antigen; Immunology; Antigen presentation; T lymphocyte; Lymphocyte; Virology; T cell; Immune system; Physiology","score_opus":0.03874073327527494,"score_gpt":0.3430584856499157,"score_spread":0.30431775237464076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2768811135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99021745,0.00051536685,0.0035109976,0.00014506505,0.0006583973,0.0019037806,0.00006734575,0.00006154348,0.0029200462],"genre_scores_gemma":[0.997028,0.00035891318,0.00006373145,0.000009047878,0.000054363096,0.0003261564,0.00006210283,0.000021892889,0.002075827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986916,0.00032026545,0.00031343044,0.0003402484,0.00004603014,0.00028840645],"domain_scores_gemma":[0.998185,0.00022361035,0.00037065474,0.0007004993,0.0004851818,0.000035089954],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0005441483,0.00018093822,0.00025396526,0.00022293253,0.0014383987,0.00008412813,0.00020315847,0.00022071294,0.0000866446],"category_scores_gemma":[0.00044159516,0.00017924348,0.00010391696,0.00009129011,0.00042763172,0.00049536163,0.00011844789,0.00034439893,0.00006724253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020312757,0.00042124046,0.015795454,0.000093866875,0.00013827246,2.3538695e-7,0.001251377,0.000040800303,0.96852225,0.000038728154,0.00046316357,0.013031487],"study_design_scores_gemma":[0.0010452961,0.00028605183,0.4160596,0.0000104155915,0.00003244085,0.000024331313,0.00012780075,0.000008877272,0.58054906,0.00017328611,0.0015697427,0.000113095906],"about_ca_topic_score_codex":0.0047441013,"about_ca_topic_score_gemma":0.00024000969,"teacher_disagreement_score":0.40026414,"about_ca_system_score_codex":0.00013173853,"about_ca_system_score_gemma":0.00015779442,"threshold_uncertainty_score":0.9998616},"labels":[],"label_agreement":null},{"id":"W2781511649","doi":"10.1128/iai.00921-17","title":"Mycoplasma bovis-Induced Inhibition of Bovine Peripheral Blood Mononuclear Cell Proliferation Is Ameliorated after Blocking the Immune-Inhibitory Programmed Death 1 Receptor","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Saskatchewan","funders":"Alberta Livestock and Meat Agency","keywords":"Biology; Peripheral blood mononuclear cell; Immune system; CD8; Immunology; Antigen; Flow cytometry; T cell; PD-L1; Immunotherapy; In vitro","score_opus":0.016010855117888627,"score_gpt":0.25716796713263385,"score_spread":0.2411571120147452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2781511649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997389,0.0006414961,0.000084635314,0.00011882633,0.00039790888,0.0006246448,0.00002884784,0.000098959725,0.0006156711],"genre_scores_gemma":[0.9989291,0.00015560244,0.00002241614,0.0001075045,0.00011258152,0.00008631968,0.00008218259,0.000023327544,0.00048101004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839157,0.00056539575,0.00040538935,0.00025495418,0.000062322564,0.0003203855],"domain_scores_gemma":[0.9989191,0.000049359376,0.000185073,0.00033559088,0.00046827353,0.000042554715],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004853541,0.00020940058,0.00023089148,0.0001845073,0.0008341293,0.00009008961,0.00007079105,0.0002707626,0.0015774809],"category_scores_gemma":[0.00007101374,0.00016500038,0.00011968688,0.00039204725,0.0003456981,0.00022824695,0.00012109527,0.00049823587,0.00012528538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064467156,0.00068050827,0.009074917,0.00005639862,0.00011569901,7.285293e-7,0.0012483974,9.289511e-7,0.9839769,0.000030506979,0.0005396433,0.0036307038],"study_design_scores_gemma":[0.0016863756,0.0014261007,0.011246682,0.00007296633,0.0000871552,0.00005385987,0.00023115521,0.000048693564,0.97946036,0.000031718766,0.0054469868,0.00020793655],"about_ca_topic_score_codex":0.0023658436,"about_ca_topic_score_gemma":0.00013459037,"teacher_disagreement_score":0.0049073435,"about_ca_system_score_codex":0.00005238865,"about_ca_system_score_gemma":0.00010980268,"threshold_uncertainty_score":0.9993352},"labels":[],"label_agreement":null},{"id":"W2787058498","doi":"10.1128/iai.00797-17","title":"Clinical Outcomes of Submicroscopic Infections and Correlates of Protection of VAR2CSA Antibodies in a Longitudinal Study of Pregnant Women in Colombia","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Blood Coagulation and Thrombosis Mechanisms","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Universidad de Antioquia; Canadian Institutes of Health Research; University of Alberta; Government of Canada; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Biology; Antibody; Immunology; Pregnancy; Virology; Genetics","score_opus":0.06228694364839383,"score_gpt":0.36426797672402894,"score_spread":0.3019810330756351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2787058498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990612,0.000036841182,0.000058015277,0.000007648117,0.0001363453,0.00061589916,0.0000023319635,0.000008151068,0.00007356754],"genre_scores_gemma":[0.99977875,0.00014627482,0.000027065014,0.0000031033328,0.000004959423,0.000018815914,0.0000011526924,0.000004702906,0.000015159865],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988594,0.00020973013,0.000636449,0.000113827504,0.000087775086,0.00009282075],"domain_scores_gemma":[0.9992492,0.00009991959,0.0002935588,0.0001480131,0.00017799233,0.000031325242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069886114,0.00008250983,0.0005339723,0.00030462007,0.000037759604,0.0000027180795,0.000020367943,0.00009545331,0.00002671242],"category_scores_gemma":[0.00027629072,0.00007217755,0.000036303587,0.00033250026,0.00024917303,0.00007499297,0.00004949042,0.0001764205,2.453049e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015694088,0.0033523946,0.98077834,0.00016884532,0.00009784115,2.0108715e-7,0.0026841823,0.0000014903333,0.011322593,0.000044954653,5.423191e-7,0.0013916845],"study_design_scores_gemma":[0.0032160284,0.006289187,0.980356,0.00028199767,0.00005521985,0.0000051750685,0.0009649977,0.00008304645,0.008548379,0.00015056011,0.0000020115335,0.000047394795],"about_ca_topic_score_codex":0.0044699605,"about_ca_topic_score_gemma":0.0022135924,"teacher_disagreement_score":0.0030590876,"about_ca_system_score_codex":0.000022611031,"about_ca_system_score_gemma":0.000038972987,"threshold_uncertainty_score":0.6757273},"labels":[],"label_agreement":null},{"id":"W2793557970","doi":"10.1128/iai.00717-17","title":"Nonspecific CD8 <sup>+</sup> T Cells and Dendritic Cells/Macrophages Participate in Formation of CD8 <sup>+</sup> T Cell-Mediated Clusters against Malaria Liver-Stage Infection","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Biology; Cytotoxic T cell; CD8; IL-2 receptor; Antigen-presenting cell; CD40; Interleukin 21; Cell biology; T cell; Antigen; Natural killer T cell; Immunology; Immune system; In vitro; Biochemistry","score_opus":0.02042753317204558,"score_gpt":0.2645990698926027,"score_spread":0.2441715367205571,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793557970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951931,0.00021376336,0.0012904805,0.00019299834,0.00014761768,0.00094710855,0.000044373748,0.000090256384,0.0018802679],"genre_scores_gemma":[0.9966557,0.0023850696,0.00006336376,0.0001898732,0.00012742377,0.00006283227,0.00008649025,0.000030317417,0.00039892987],"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.99759144,0.00059957645,0.00063067896,0.00032031877,0.00032456388,0.00053342705],"domain_scores_gemma":[0.9985359,0.00025849318,0.00019481193,0.0003886072,0.00033119874,0.0002909885],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00093820365,0.0002940636,0.00046983754,0.00056222494,0.00033988612,0.00010218326,0.00007635216,0.0002633401,0.00030392726],"category_scores_gemma":[0.0002279062,0.00028160115,0.00010253019,0.00054205686,0.00036711874,0.00055669656,0.00012070621,0.00068319275,0.00009103998],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0047157174,0.0033204847,0.08467248,0.004239785,0.00036361068,0.00017117114,0.017642574,0.0048101395,0.8554447,0.00031598718,0.0016003886,0.02270296],"study_design_scores_gemma":[0.014017117,0.003322463,0.1591789,0.00051621586,0.000249126,0.000074919364,0.0020016367,0.5438919,0.27138644,0.000042011994,0.0046522166,0.00066703523],"about_ca_topic_score_codex":0.0028973052,"about_ca_topic_score_gemma":0.00041283786,"teacher_disagreement_score":0.5840583,"about_ca_system_score_codex":0.00015366418,"about_ca_system_score_gemma":0.000101174184,"threshold_uncertainty_score":0.99996364},"labels":[],"label_agreement":null},{"id":"W2796484035","doi":"10.1128/iai.00285-18","title":"A Novel Sialylation Site on Neisseria gonorrhoeae Lipooligosaccharide Links Heptose II Lactose Expression with Pathogenicity","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Microbiology; Sialic acid; Neuraminidase; Epitope; Neisseria gonorrhoeae; Lactose; Biology; Heptose; Virulence factor; N-Acetylneuraminic acid; Virulence; Mucin; Mutant; Biochemistry; Antibody; Immunology; Enzyme","score_opus":0.01492038998072787,"score_gpt":0.24567542684721272,"score_spread":0.23075503686648485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796484035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663705,0.00006696159,0.00085821765,0.0000752299,0.0010177383,0.00023199191,0.000032543547,0.00016526395,0.00091498095],"genre_scores_gemma":[0.99892527,0.00009784875,0.000052748368,0.00013158284,0.00018744651,0.000023829169,0.00012758902,0.00001800677,0.0004356669],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999089,0.00016055681,0.00023808131,0.00026664807,0.000011399974,0.000234341],"domain_scores_gemma":[0.99925673,0.00006293406,0.00015476494,0.00031899856,0.00016910276,0.000037454138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002149326,0.00022027244,0.00021891975,0.00015363294,0.0011871322,0.000052439656,0.00006034204,0.0004081862,0.0006715453],"category_scores_gemma":[0.0000751518,0.00017178088,0.000058891233,0.00021969255,0.0001359577,0.000291526,0.00010555254,0.0005482314,0.00018657258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064832944,0.00036841893,0.015612982,0.000009238158,0.000046294317,6.153835e-8,0.00045414548,0.0000038147477,0.9770174,0.00009460174,0.00017276501,0.0055719595],"study_design_scores_gemma":[0.0025862474,0.003297963,0.41705546,0.0001207704,0.0000626634,0.00014650787,0.0000783478,0.000028395647,0.53184694,0.000042908458,0.044358894,0.00037487043],"about_ca_topic_score_codex":0.002374069,"about_ca_topic_score_gemma":0.0008276458,"teacher_disagreement_score":0.44517043,"about_ca_system_score_codex":0.000036309568,"about_ca_system_score_gemma":0.000033378783,"threshold_uncertainty_score":0.9130581},"labels":[],"label_agreement":null},{"id":"W2802533205","doi":"10.1128/iai.00208-18","title":"Entamoeba histolytica Alters Ileal Paneth Cell Functions in Intact and Muc2 Mucin Deficiency","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Cancer Institute; Government of Canada; National Institutes of Health; Alberta Livestock and Meat Agency; Crohn's and Colitis Canada; Center of Innovation Program; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Paneth cell; Entamoeba histolytica; Mucin 2; Mucin; Biology; Goblet cell; Secretion; Microbiology; Defensin; Mucus; Lysozyme; Ileum; Biochemistry; Gene expression; Small intestine; Epithelium; Antimicrobial; Gene","score_opus":0.013960055920581688,"score_gpt":0.264779965105281,"score_spread":0.2508199091846993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802533205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96132445,0.00011936675,0.00032220464,0.000089403,0.0003212609,0.00020519234,0.000003879248,0.000054463188,0.037559777],"genre_scores_gemma":[0.9986023,0.0001757121,0.00006552868,0.00016472851,0.000058019,0.000015625263,0.000018636307,0.00000986034,0.0008896063],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99933213,0.00007119526,0.00017704094,0.00017406787,0.000071953604,0.00017361593],"domain_scores_gemma":[0.9995713,0.00004686552,0.00004812563,0.00017848799,0.00006114243,0.000094028794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016259363,0.00012212044,0.00015876476,0.00022165646,0.00032565452,0.000020771728,0.000016014897,0.0000802928,0.00034127678],"category_scores_gemma":[0.000046878828,0.000106282256,0.000035287314,0.00023723984,0.00019782751,0.000119854674,0.000037599617,0.00023844262,0.00006649069],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014403301,0.0011039446,0.96822613,0.00006494386,0.000039091614,0.000010506835,0.0011781616,0.0000014143505,0.0029672296,0.00020874989,0.0006040532,0.02545176],"study_design_scores_gemma":[0.0020343775,0.0013639804,0.9818776,0.000041140644,0.0000913424,0.0002205226,0.00036240616,0.00022154655,0.0010572443,0.00010625786,0.012487795,0.00013574715],"about_ca_topic_score_codex":0.0060463524,"about_ca_topic_score_gemma":0.00065538747,"teacher_disagreement_score":0.03727783,"about_ca_system_score_codex":0.00013881119,"about_ca_system_score_gemma":0.000046383895,"threshold_uncertainty_score":0.9140317},"labels":[],"label_agreement":null},{"id":"W2805909579","doi":"10.1128/iai.00241-18","title":"The Periplasmic Trehalase Affects Type 1 Fimbria Production and Virulence of Extraintestinal Pathogenic Escherichia coli Strain MT78","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Government of Canada","keywords":"Periplasmic space; Biology; Virulence; Microbiology; Fimbria; Escherichia coli; Strain (injury); Enterobacteriaceae; Pilus; Gene; Genetics","score_opus":0.015532044124009907,"score_gpt":0.2807959958607443,"score_spread":0.2652639517367344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2805909579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827045,0.00072494295,0.00006354964,0.00007728804,0.00018023272,0.00017999107,0.0000058500686,0.000010836408,0.0004868427],"genre_scores_gemma":[0.99777055,0.001609087,0.00011871279,0.00002221901,0.00011985446,0.000015057333,0.0000054401185,0.0000074757804,0.00033162654],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999315,0.00020197412,0.00010118756,0.0001634763,0.00007361098,0.00014474796],"domain_scores_gemma":[0.999476,0.000040880645,0.000063863685,0.00019213841,0.00018432239,0.000042775187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042786013,0.00009643479,0.0000816292,0.000021919848,0.00043552628,0.000026920441,0.000055173678,0.0000545716,0.000009741463],"category_scores_gemma":[0.0011659187,0.00007457204,0.000024378907,0.00012271763,0.0005921972,0.000007862484,0.00011472085,0.00012939174,0.0000016183657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010862039,0.000041363972,0.011954225,0.000025685678,0.000030777694,2.3229137e-7,0.000103507264,9.3000466e-7,0.9815085,0.000036430174,0.00025704157,0.0059326706],"study_design_scores_gemma":[0.0004471965,0.0026988743,0.7927714,0.000053861295,0.000028848643,0.000052895124,0.0003013683,0.00027755174,0.19124988,0.00009573392,0.011819095,0.00020328774],"about_ca_topic_score_codex":0.00009896449,"about_ca_topic_score_gemma":0.00032089904,"teacher_disagreement_score":0.79025865,"about_ca_system_score_codex":0.000009281567,"about_ca_system_score_gemma":0.000059387763,"threshold_uncertainty_score":0.33497602},"labels":[],"label_agreement":null},{"id":"W2811406123","doi":"10.1128/iai.00244-18","title":"The Protozoan Parasite Toxoplasma gondii Selectively Reprograms the Host Cell Translatome","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Children's Hospital of Eastern Ontario; University of Ottawa; Jewish General Hospital; Institut National de la Recherche Scientifique","funders":"March of Dimes Foundation","keywords":"Biology; Toxoplasma gondii; Protozoan parasite; Parasite hosting; Host (biology); Protozoa; Toxoplasmosis; Microbiology; Virology; Immunology; Ecology; Antibody","score_opus":0.014098901637674365,"score_gpt":0.27757236954462655,"score_spread":0.2634734679069522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2811406123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889902,0.0013765717,0.000066163746,0.00082646933,0.00047671868,0.0010885963,0.000010596926,0.00014315196,0.007021549],"genre_scores_gemma":[0.9950713,0.0007096363,0.000009815448,0.000085357846,0.000054187367,0.00028748065,0.000008053912,0.000014141639,0.0037600258],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982733,0.00075259665,0.0002193045,0.00024381027,0.000054967466,0.00045598985],"domain_scores_gemma":[0.99881816,0.00043096763,0.00009736004,0.00042235214,0.00020463274,0.000026549122],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00095333584,0.000186884,0.00016990467,0.00006083879,0.0034175212,0.00010578483,0.00021367104,0.00016258015,0.00008672021],"category_scores_gemma":[0.00020150768,0.00010285426,0.00008301788,0.00034615293,0.0016150988,0.00012222606,0.00013766844,0.0007867784,0.00037276937],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015388229,0.00076910784,0.17551439,0.00007912938,0.0010862545,0.000003518903,0.012929706,8.8360116e-7,0.66458,0.0016526453,0.008275702,0.13356987],"study_design_scores_gemma":[0.0009437781,0.00093600387,0.3554515,0.000013289132,0.000030577463,0.000104861785,0.0004770143,0.000006257327,0.17252754,0.00022034864,0.4691139,0.00017495573],"about_ca_topic_score_codex":0.0011009322,"about_ca_topic_score_gemma":0.0013129279,"teacher_disagreement_score":0.49205244,"about_ca_system_score_codex":0.000038780276,"about_ca_system_score_gemma":0.00005676072,"threshold_uncertainty_score":0.9978799},"labels":[],"label_agreement":null},{"id":"W2811478915","doi":"10.1128/iai.00403-18","title":"Secreted Phosphatase and Deoxyribonuclease Are Required by Pseudomonas aeruginosa To Defend against Neutrophil Extracellular Traps","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Athabasca University; University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Neutrophil extracellular traps; Biology; Innate immune system; Microbiology; Extracellular; Pseudomonas aeruginosa; Chromatin; Deoxyribonuclease; Immune system; Antimicrobial; Cell biology; Immunity; Inflammation; Bacteria; Immunology; Enzyme; DNA; Biochemistry; Genetics","score_opus":0.013998291653598331,"score_gpt":0.23199794097356005,"score_spread":0.2179996493199617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2811478915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942695,0.003228363,0.00062479364,0.0002918696,0.00050975935,0.00037255007,0.00018632275,0.00014567163,0.00037116752],"genre_scores_gemma":[0.9972837,0.000627367,0.00006570506,0.001060123,0.000057615267,0.000027981509,0.00027950134,0.000030030053,0.000567957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998411,0.00038411116,0.00031059227,0.00043765063,0.000046492794,0.00041013106],"domain_scores_gemma":[0.9991287,0.000069461894,0.0001401889,0.00038396294,0.00014285794,0.0001348178],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029090006,0.00031726644,0.00034066587,0.0001624585,0.00082942535,0.00006361465,0.00011879185,0.00026275968,0.00034467597],"category_scores_gemma":[0.00009063545,0.00030083192,0.000067176676,0.00026381447,0.0004178949,0.00024890612,0.00015927745,0.0004037285,0.00030394117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032986733,0.00015528813,0.001227079,0.00001926449,0.00009429857,0.000012421307,0.00036252115,3.3126906e-7,0.98154706,0.0007056605,0.0033614375,0.012184777],"study_design_scores_gemma":[0.0020748207,0.0008467946,0.015955208,0.00006418074,0.00006580278,0.00010501003,0.00027993348,0.0000080872305,0.817187,0.00017774513,0.16279662,0.00043881792],"about_ca_topic_score_codex":0.00048206263,"about_ca_topic_score_gemma":0.00007810889,"teacher_disagreement_score":0.16436008,"about_ca_system_score_codex":0.000039275383,"about_ca_system_score_gemma":0.000024426,"threshold_uncertainty_score":0.9999444},"labels":[],"label_agreement":null},{"id":"W2862744966","doi":"10.1128/iai.00069-18","title":"<i>ATG</i>Genes Influence the Virulence of Cryptococcus neoformans through Contributions beyond Core Autophagy Functions","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Cryptococcus neoformans; Autophagy; Biology; Virulence; Microbiology; Yeast; Human pathogen; Pathogen; Cryptococcus; Opportunistic pathogen; Gene; Fungal pathogen; Mutant; Genetics","score_opus":0.02269838413860463,"score_gpt":0.31336396314569626,"score_spread":0.2906655790070916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2862744966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98326665,0.0005522561,0.0018614655,0.0003993615,0.0004882166,0.00035330444,0.00004438639,0.00008450789,0.012949873],"genre_scores_gemma":[0.9978089,0.0009775084,0.00004934891,0.00045682766,0.00013189668,0.000054161712,0.000012095146,0.0000067204896,0.0005025952],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992771,0.000057910154,0.00025548253,0.00012308962,0.00010927611,0.00017710417],"domain_scores_gemma":[0.99880147,0.0001285585,0.00010380212,0.00030711954,0.0006121493,0.00004688131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022469251,0.0001256039,0.00020318116,0.000063414416,0.0012328767,0.000021905482,0.0000462126,0.000079435675,0.00013541829],"category_scores_gemma":[0.00022969134,0.00008517916,0.00008270809,0.00041448968,0.00081180007,0.00022721801,0.000078261604,0.00027079857,0.00004330581],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008210735,0.0017531168,0.62166345,0.00034402258,0.0010870752,0.000005172274,0.008114313,0.00015126329,0.28876045,0.037550483,0.018677235,0.021072341],"study_design_scores_gemma":[0.0010728237,0.001402304,0.83023536,0.000091034235,0.00021406045,0.00018479118,0.00059796317,0.00023204519,0.024975574,0.0014683745,0.13935648,0.00016917184],"about_ca_topic_score_codex":0.0024319494,"about_ca_topic_score_gemma":0.00031345265,"teacher_disagreement_score":0.2637849,"about_ca_system_score_codex":0.000040955085,"about_ca_system_score_gemma":0.00006470192,"threshold_uncertainty_score":0.94824153},"labels":[],"label_agreement":null},{"id":"W2884148247","doi":"10.1128/iai.00366-18","title":"Correction for Gavina et al., “Clinical Outcomes of Submicroscopic Infections and Correlates of Protection of VAR2CSA Antibodies in a Longitudinal Study of Pregnant Women in Colombia”","year":2018,"lang":"en","type":"erratum","venue":"Infection and Immunity","topic":"Parvovirus B19 Infection Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Antibody; Immunology; Pregnancy; Virology; Genetics","score_opus":0.07366457261623144,"score_gpt":0.4014752368983043,"score_spread":0.32781066428207284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2884148247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911955,0.00038501478,0.000093783354,0.000027405757,0.0053427583,0.002410258,0.000040086365,0.000025313751,0.00047988992],"genre_scores_gemma":[0.9944179,0.004026712,0.000016723203,0.000015355145,0.000031449283,0.0003004141,0.000026143081,0.000026245345,0.0011390451],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9970509,0.00052962365,0.0015930673,0.00036165302,0.00021870667,0.00024607137],"domain_scores_gemma":[0.9969397,0.0006508589,0.001317903,0.00032567498,0.00070937665,0.000056456298],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0019000914,0.00031843365,0.0018130841,0.0010982648,0.000107677864,0.00000889905,0.000050100898,0.00040665842,0.000019019946],"category_scores_gemma":[0.0025225678,0.00029371268,0.00016371047,0.0006545153,0.0006288646,0.00016125705,0.00014328874,0.00095477345,6.3983856e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073972455,0.005061427,0.98314923,0.0011334684,0.0005742716,6.3724826e-7,0.0027460258,0.000006697505,0.0005678845,0.000003322787,0.0050774245,0.0009399063],"study_design_scores_gemma":[0.0045491266,0.007708146,0.98267347,0.0016839457,0.00026022532,0.000024220531,0.0010324279,0.00011785696,0.0004970528,0.000038121027,0.0012368131,0.00017858097],"about_ca_topic_score_codex":0.013362263,"about_ca_topic_score_gemma":0.009069906,"teacher_disagreement_score":0.005311309,"about_ca_system_score_codex":0.00017207097,"about_ca_system_score_gemma":0.00023439682,"threshold_uncertainty_score":0.9999515},"labels":[],"label_agreement":null},{"id":"W2885137196","doi":"10.1128/iai.00092-18","title":"Specific Binding to Differentially Expressed Human Carcinoembryonic Antigen-Related Cell Adhesion Molecules Determines the Outcome of Neisseria gonorrhoeae Infections along the Female Reproductive Tract","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Peptidase Inhibition and Analysis","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research; National Institutes of Health; Government of Canada; University of Toronto; National Institute of Allergy and Infectious Diseases; McMaster University","keywords":"Biology; Bacterial adhesin; Carcinoembryonic antigen; Immunology; Cell adhesion molecule; Neisseria gonorrhoeae; Antigen; Tumor necrosis factor alpha; Microbiology; Gene; Cancer; Escherichia coli; Genetics","score_opus":0.03525373361511247,"score_gpt":0.3017657654620075,"score_spread":0.26651203184689504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885137196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997573,0.000066991386,0.00021133343,0.0002682386,0.00015444418,0.00037691864,0.000007919358,0.00006442485,0.0012766955],"genre_scores_gemma":[0.9991409,0.00008402336,0.000015447542,0.00008138407,0.0001382686,0.000018641587,0.000027283746,0.000017499593,0.00047653136],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99876726,0.00025885116,0.00044385908,0.00026234367,0.00008938118,0.00017832236],"domain_scores_gemma":[0.99881893,0.00008557244,0.00020929365,0.0005817367,0.00022785041,0.000076612116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037347595,0.00017773735,0.00027554718,0.00023631069,0.00088902516,0.000058958787,0.000084844425,0.00008328294,0.0003053075],"category_scores_gemma":[0.0001276977,0.000111040565,0.00018376384,0.000557516,0.00024172649,0.00011984749,0.00007938051,0.0003158604,0.00003321984],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033850672,0.0002855197,0.23425464,0.000027402231,0.00004632892,6.801149e-7,0.0010611055,0.0000062141917,0.76370406,0.000028288718,0.00006570932,0.00048621165],"study_design_scores_gemma":[0.00047109675,0.00035432272,0.74617314,0.00010873528,0.00008796543,0.000030059186,0.00042998514,0.000045898665,0.2516859,0.000022588782,0.0004853953,0.00010494542],"about_ca_topic_score_codex":0.0015016472,"about_ca_topic_score_gemma":0.00031230203,"teacher_disagreement_score":0.51201814,"about_ca_system_score_codex":0.00004129557,"about_ca_system_score_gemma":0.000020312122,"threshold_uncertainty_score":0.68377525},"labels":[],"label_agreement":null},{"id":"W2890777023","doi":"10.1128/iai.00564-18","title":"Correction for Cobo et al., “Entamoeba histolytica Alters Ileal Paneth Cell Functions in Intact and Muc2 Mucin Deficiency”","year":2018,"lang":"en","type":"erratum","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Entamoeba histolytica; Biology; Mucin; Mucin 2; Entamoeba; Microbiology; Genetics; Biochemistry; Gene; Gene expression","score_opus":0.01827942230275718,"score_gpt":0.2923474741063175,"score_spread":0.2740680518035603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2890777023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57413304,0.002818347,0.006731891,0.0018776751,0.10280961,0.0050758226,0.00032672266,0.000599931,0.30562696],"genre_scores_gemma":[0.8606449,0.0046553607,0.00015336412,0.002245574,0.0005072101,0.00034312194,0.0023328674,0.00011078906,0.12900682],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984616,0.00017313537,0.00041669584,0.00045974084,0.0001607435,0.00032810387],"domain_scores_gemma":[0.9988929,0.00018844153,0.00022874212,0.00034471048,0.00019881099,0.0001463861],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045010584,0.00037345602,0.0005113742,0.00057700416,0.0005453482,0.00006273855,0.00003758513,0.0004155266,0.00018928811],"category_scores_gemma":[0.00020816758,0.00034739127,0.00013989946,0.00031740856,0.00023158718,0.00017563424,0.000065450055,0.0011285238,0.000031729705],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030217785,0.0011326765,0.025790645,0.00027146682,0.00011617563,0.000006382424,0.0004938736,0.0000040312207,0.00014567199,0.000028793991,0.9627976,0.008910546],"study_design_scores_gemma":[0.0030372406,0.0027082306,0.12708493,0.0003627913,0.00042865745,0.0003434248,0.00033350723,0.0012424281,0.000090068424,0.000056458186,0.86392564,0.00038663193],"about_ca_topic_score_codex":0.009227852,"about_ca_topic_score_gemma":0.002507347,"teacher_disagreement_score":0.28651187,"about_ca_system_score_codex":0.000509945,"about_ca_system_score_gemma":0.0002813145,"threshold_uncertainty_score":0.99989784},"labels":[],"label_agreement":null},{"id":"W2897764943","doi":"10.1128/iai.00661-18","title":"Characterization of Host Responses during Pseudomonas aeruginosa Acute Infection in the Lungs and Blood and after Treatment with the Synthetic Immunomodulatory Peptide IDR-1002","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inhalation and Respiratory Drug Delivery","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; University of British Columbia; Canada Research Chairs; Government of Canada","keywords":"Pseudomonas aeruginosa; Cystic fibrosis; Biology; Microbiology; Pneumonia; Antibiotics; Pathogen; Lung; Immunology; Pseudomonadaceae; Opportunistic pathogen; Antibiotic resistance; Bacteria; Pseudomonadales; Virology; Medicine; Internal medicine","score_opus":0.007818030771347842,"score_gpt":0.2334432254057292,"score_spread":0.22562519463438135,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897764943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904335,0.00012056833,0.000015995722,0.0002228037,0.000049547943,0.00037451097,0.0000049497703,0.000019692654,0.00014860353],"genre_scores_gemma":[0.99857426,0.0010229344,0.000004150339,0.00015903883,0.000049218477,0.000036240475,0.0000050133067,0.000008951077,0.00014019098],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99926907,0.00025311077,0.0001617294,0.00012651729,0.00009287801,0.00009668517],"domain_scores_gemma":[0.9995411,0.000059649818,0.00009155269,0.00019580187,0.000083590254,0.000028285647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002571577,0.0001237854,0.0001475868,0.0001408152,0.00027259794,0.00003432447,0.000016376489,0.00006183413,0.000019813362],"category_scores_gemma":[0.000017757116,0.00006755573,0.000026398011,0.00015465787,0.00031223672,0.00015195293,0.000023672284,0.00014075868,0.0000017685074],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012464754,0.00023611946,0.55339295,0.000064345004,0.00013617378,0.000009983654,0.0047513754,3.2289157e-7,0.4384324,0.000013647616,0.000001170748,0.0017150628],"study_design_scores_gemma":[0.0013489207,0.00087818195,0.94793326,0.000093614595,0.00017233021,0.0003742676,0.00014204829,0.00003295586,0.048569694,0.0000012489807,0.0003798868,0.000073575604],"about_ca_topic_score_codex":0.00049701985,"about_ca_topic_score_gemma":0.00018961124,"teacher_disagreement_score":0.39454034,"about_ca_system_score_codex":0.000028356904,"about_ca_system_score_gemma":0.00002814447,"threshold_uncertainty_score":0.27548426},"labels":[],"label_agreement":null},{"id":"W2900552673","doi":"10.1128/iai.00790-18","title":"Novel Assay To Characterize Neutrophil Responses to Oral Biofilms","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Biology; Biofilm; Neutrophil extracellular traps; Microbiology; Inflammation; Periodontal disease; Immunology; Neutrophile; Bacteria; Medicine","score_opus":0.05856493709043682,"score_gpt":0.3431948462357346,"score_spread":0.2846299091452978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900552673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660176,0.000011870009,0.00043175372,0.00049083785,0.000943092,0.00016996305,0.00010406278,0.00006843341,0.0011782526],"genre_scores_gemma":[0.99399227,0.000014135871,0.00020508606,0.000929237,0.00016845798,0.000014478534,0.000020524494,0.0000103271595,0.0046454947],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911356,0.00027660065,0.00014142886,0.00018125675,0.00005909446,0.00022808513],"domain_scores_gemma":[0.99938625,0.00006284077,0.000026216885,0.00024920556,0.0001464188,0.00012907403],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005170786,0.00010500335,0.00014167553,0.00017182648,0.00039904646,0.000106362895,0.000102565136,0.00012427403,0.0012681187],"category_scores_gemma":[0.00032702417,0.00009744265,0.000037312788,0.0002842025,0.00013126375,0.000130059,0.00018814094,0.00024581136,0.0021065124],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004343399,0.000079871475,0.06529798,0.0000063392954,0.000017472457,0.0000034340237,0.00014290014,8.881797e-8,0.92458975,0.000054448392,0.0028086235,0.0065647173],"study_design_scores_gemma":[0.00027714475,0.00045355802,0.8224644,0.00001272542,0.0000034971279,0.00011256184,0.000012863942,0.0000023708756,0.03487918,0.000006134484,0.14166644,0.000109138826],"about_ca_topic_score_codex":0.0037480965,"about_ca_topic_score_gemma":0.0011013323,"teacher_disagreement_score":0.8897106,"about_ca_system_score_codex":0.000030031877,"about_ca_system_score_gemma":0.000027562424,"threshold_uncertainty_score":0.9996449},"labels":[],"label_agreement":null},{"id":"W2912332676","doi":"10.1128/iai.00755-18","title":"Contribution of Active Iron Uptake to Acinetobacter baumannii Pathogenicity","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Ministero dell’Istruzione, dell’Università e della Ricerca; Deutsche Forschungsgemeinschaft","keywords":"Acinetobacter baumannii; Biology; Pathogenicity; Microbiology; Acinetobacter; Bacteria; Antibiotics; Genetics; Pseudomonas aeruginosa","score_opus":0.006139417697093056,"score_gpt":0.24236671889530137,"score_spread":0.2362273011982083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912332676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99831396,0.000030347217,0.0004467957,0.000025238738,0.00019008959,0.00020352937,0.00002003866,0.00000761652,0.0007624038],"genre_scores_gemma":[0.99936116,0.00008131668,0.000053696676,0.000078750134,0.00003680867,0.0000024076085,0.000076601835,0.000006483995,0.00030276206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995017,0.00006602092,0.00013853896,0.00014013586,0.000048882495,0.00010469229],"domain_scores_gemma":[0.99953413,0.000007647577,0.00007313967,0.0002222843,0.00012403516,0.00003875201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012999961,0.00008365626,0.00011582425,0.000029029254,0.000045087876,0.000010306411,0.000044912358,0.00010250426,0.000060843282],"category_scores_gemma":[0.000085957065,0.00007961443,0.000042733398,0.000057111316,0.0000354914,0.000007362624,0.000066936795,0.00007130558,0.000018003582],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020585937,0.000041104875,0.107867196,0.000011891769,0.00001818165,7.9403726e-8,0.000040993556,0.0000048294987,0.88910335,0.00004337624,0.00008627957,0.0025768534],"study_design_scores_gemma":[0.0003088758,0.00026449174,0.7323275,0.000011790565,0.000007132852,0.0000034639265,0.000026566866,0.000004356787,0.2577997,0.000014320804,0.0091599235,0.000071846436],"about_ca_topic_score_codex":0.00013532769,"about_ca_topic_score_gemma":0.00006159329,"teacher_disagreement_score":0.6313036,"about_ca_system_score_codex":0.000015627837,"about_ca_system_score_gemma":0.000016601669,"threshold_uncertainty_score":0.32465822},"labels":[],"label_agreement":null},{"id":"W2914016740","doi":"10.1128/iai.00066-19","title":"2-Hydroxylation of <i>Acinetobacter baumannii</i> Lipid A Contributes to Virulence","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; National Health and Medical Research Council; Department for Employment and Learning, Northern Ireland; European Commission; Queen's University; Universidad de Navarra; Queen's University Belfast; Research Councils UK","keywords":"Acinetobacter baumannii; Microbiology; Biology; Lipid A; Virulence; Polymyxin; Lipopolysaccharide; Biochemistry; Antibiotics; Immunology; Bacteria","score_opus":0.0053076438482077565,"score_gpt":0.2338592606621254,"score_spread":0.22855161681391764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914016740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967048,0.00006824135,0.0012681042,0.000044300265,0.0002152856,0.000162004,0.0000066670696,0.000007825092,0.0015227508],"genre_scores_gemma":[0.99909514,0.00012308848,0.000071831426,0.00017221546,0.000035101486,0.0000022171434,0.00002843107,0.000006095527,0.00046588917],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99956346,0.000049589456,0.00013920559,0.00012152206,0.000040372444,0.0000858716],"domain_scores_gemma":[0.99960536,0.000011486909,0.00006080904,0.00021485396,0.00008075203,0.000026763242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013638966,0.00007172204,0.00010334351,0.000036272886,0.000037999387,0.000014504675,0.000047350393,0.00007569556,0.000033494183],"category_scores_gemma":[0.000063861684,0.00006856914,0.000029855451,0.000073485266,0.000038218415,0.000006999732,0.000059683945,0.0000521842,0.000021555035],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068826455,0.000021954675,0.28068984,0.000017304363,0.00001461212,2.7188765e-8,0.000016837272,0.0000104084975,0.7182223,0.00006239782,0.00020160899,0.0006738583],"study_design_scores_gemma":[0.0003082533,0.00021544196,0.6850159,0.000031555217,0.000006490755,0.000002371052,0.000014925475,0.000019669385,0.28784406,0.000028906174,0.026433188,0.000079242534],"about_ca_topic_score_codex":0.00011186104,"about_ca_topic_score_gemma":0.000029455605,"teacher_disagreement_score":0.4303783,"about_ca_system_score_codex":0.000008007484,"about_ca_system_score_gemma":0.000014085528,"threshold_uncertainty_score":0.27961686},"labels":[],"label_agreement":null},{"id":"W2917448431","doi":"10.1128/iai.00064-19","title":"Leishmania donovani Lipophosphoglycan Increases Macrophage-Dependent Chemotaxis of CXCR6-Expressing Cells via CXCL16 Induction","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; McGill University; Institut National de la Recherche Scientifique","funders":"Fonds de Recherche du Québec - Santé","keywords":"Lipophosphoglycan; Leishmania donovani; Biology; Macrophage; Leishmania; Chemotaxis; Chemokine; CXCL16; Microbiology; Immunology; Virology; Parasite hosting; Receptor; Immune system; Leishmaniasis; Chemokine receptor; Visceral leishmaniasis; In vitro; Genetics","score_opus":0.015953614728059003,"score_gpt":0.27118897054266705,"score_spread":0.25523535581460804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917448431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99477506,0.0004949507,0.00010875115,0.0000918191,0.00035888198,0.0004924182,0.000006394455,0.00008597146,0.0035857453],"genre_scores_gemma":[0.9973069,0.0011967227,0.00014873761,0.00006515953,0.0000900406,0.000014460557,0.000012522681,0.000027174297,0.0011383226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859166,0.00016100814,0.00035833038,0.00026996474,0.00035091394,0.000268106],"domain_scores_gemma":[0.9988439,0.000094574716,0.00018620143,0.00044526384,0.00030140727,0.00012865597],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049040106,0.00020041889,0.00042291015,0.00021856205,0.00022683963,0.00004605486,0.00007388313,0.00013674794,0.0005592134],"category_scores_gemma":[0.00017723438,0.00018065555,0.000103195125,0.0002970823,0.00018172988,0.0002848236,0.00020176504,0.00051837985,0.00008748464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003354264,0.00048401763,0.118303604,0.00033712524,0.00016647363,0.0000059615927,0.00033653286,0.000008196188,0.8549498,0.000017060654,0.00029884957,0.024757005],"study_design_scores_gemma":[0.0014803208,0.0006296873,0.48280752,0.00015135357,0.000054979653,0.0000979866,0.00028798802,0.00008352713,0.51219547,0.00003985101,0.0020169413,0.00015433852],"about_ca_topic_score_codex":0.015109436,"about_ca_topic_score_gemma":0.00011908643,"teacher_disagreement_score":0.36450392,"about_ca_system_score_codex":0.0001501411,"about_ca_system_score_gemma":0.00006795858,"threshold_uncertainty_score":0.99144906},"labels":[],"label_agreement":null},{"id":"W2920313046","doi":"10.1128/iai.00035-19","title":"Metabolites Involved in Immune Evasion by <i>Batrachochytrium dendrobatidis</i> Include the Polyamine Spermidine","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Complementary and Integrative Health; Saskatchewan Health Research Foundation; National Institutes of Health; National Science Foundation","keywords":"Spermidine; Putrescine; Biology; Spermine; Polyamine; Cadaverine; Chytridiomycosis; Ornithine decarboxylase; Immune system; Biochemistry; Ornithine; Microbiology; Amphibian; Arginine; Immunology; Ecology; Enzyme","score_opus":0.008138959362634644,"score_gpt":0.21877702656764839,"score_spread":0.21063806720501374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920313046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914568,0.006029528,0.00002255066,0.00036150042,0.0006069146,0.00028543052,0.000025287984,0.00005184507,0.001160142],"genre_scores_gemma":[0.99499786,0.0018428904,0.000006467954,0.00028580558,0.00002244576,0.000010255083,0.00014235568,0.000013973626,0.0026779359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889994,0.0003145524,0.00029527146,0.00019023234,0.000030866962,0.0002691383],"domain_scores_gemma":[0.9993704,0.0001714906,0.00011989197,0.00028270602,0.00004067355,0.000014824297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004291788,0.00018800542,0.00029540126,0.00010212484,0.00029167364,0.000039338243,0.00012708879,0.00017490947,0.0004785425],"category_scores_gemma":[0.000059640457,0.00013524896,0.00008404608,0.00021200482,0.0002055135,0.0002765924,0.00016631254,0.00055552955,0.00018712692],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008726086,0.00015427695,0.050820332,0.00001945271,0.000046440557,2.9208172e-7,0.00024798213,0.0000032454232,0.945942,0.0002392994,0.00085543084,0.0015839769],"study_design_scores_gemma":[0.0018336007,0.000188761,0.27966315,0.000060706785,0.000036234032,0.000047552814,0.00054152805,0.000012073447,0.6709552,0.00015207828,0.04623449,0.00027463763],"about_ca_topic_score_codex":0.0057912953,"about_ca_topic_score_gemma":0.00032376236,"teacher_disagreement_score":0.27498683,"about_ca_system_score_codex":0.000034349898,"about_ca_system_score_gemma":0.000023320938,"threshold_uncertainty_score":0.8754745},"labels":[],"label_agreement":null},{"id":"W2938159905","doi":"10.1128/iai.00187-19","title":"The <i>Edwardsiella piscicida</i> Type III Effector EseJ Suppresses Expression of Type 1 Fimbriae, Leading to Decreased Bacterial Adherence to Host Cells","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"China Agricultural Research System; University of British Columbia; National Natural Science Foundation of China","keywords":"Fimbria; Biology; Microbiology; Effector; Enterobacteriaceae; Host (biology); Fimbriae Proteins; Pilus; Bacteria; Escherichia coli; Immunology; Gene; Ecology; Genetics","score_opus":0.00984427113983566,"score_gpt":0.24873914514673628,"score_spread":0.23889487400690063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2938159905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498314,0.00029448155,0.000039977414,0.00003631683,0.0021736848,0.00059073913,0.000022443557,0.0000433658,0.0018158248],"genre_scores_gemma":[0.99463654,0.00011249756,0.000015225748,0.00013632694,0.000029309154,0.000009986491,0.00007795309,0.000011581814,0.004970554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991016,0.00023756108,0.00020023945,0.00020095037,0.000033006374,0.00022666133],"domain_scores_gemma":[0.9992421,0.0001698006,0.00008818594,0.00032019534,0.00013325739,0.000046460715],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023098954,0.00016029121,0.00022034511,0.00007116929,0.00027691486,0.00004737184,0.00016960857,0.00012049097,0.00086012506],"category_scores_gemma":[0.00013694157,0.00011357128,0.000055227196,0.00022971326,0.000069769994,0.00008088165,0.00022244459,0.00016602002,0.0010772869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010110982,0.0000681636,0.002246027,0.000036542722,0.00004552125,2.3005907e-7,0.00029924797,0.0000038669264,0.9758386,0.000028061015,0.019542193,0.0008804507],"study_design_scores_gemma":[0.0008059469,0.0006741701,0.011981745,0.00009859419,0.000035987294,0.0000024169544,0.00012875146,5.7936967e-7,0.8280264,0.000003361479,0.15808842,0.00015362322],"about_ca_topic_score_codex":0.0006787834,"about_ca_topic_score_gemma":0.00009253488,"teacher_disagreement_score":0.1478122,"about_ca_system_score_codex":0.000018933304,"about_ca_system_score_gemma":0.000031673782,"threshold_uncertainty_score":0.9997005},"labels":[],"label_agreement":null},{"id":"W2946462140","doi":"10.1128/iai.00022-19","title":"Design and Characterization of Protein E-PilA, a Candidate Fusion Antigen for Nontypeable Haemophilus influenzae Vaccine","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Pilin; Biology; Actinobacillus pleuropneumoniae; Haemophilus influenzae; Antigen; Microbiology; Pilus; Virology; Serotype; Biochemistry; Immunology; Virulence; Gene","score_opus":0.008451218287711561,"score_gpt":0.22483712708395565,"score_spread":0.2163859087962441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946462140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99360156,0.000056855486,0.0056957244,0.000036125562,0.000058792994,0.0005092503,0.000014611421,0.000007618501,0.000019467054],"genre_scores_gemma":[0.9990209,0.00021599127,0.00017979738,0.000058425754,0.000032487314,0.000015902599,0.0003347615,0.00000717693,0.00013459339],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99959666,0.000039472445,0.00012860818,0.00012592785,0.00003209853,0.000077228295],"domain_scores_gemma":[0.9996933,0.000004756981,0.000087681685,0.000102642254,0.0000842747,0.000027346743],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010050833,0.00007984201,0.00010199539,0.00002804229,0.000066435365,0.000014330039,0.000026252546,0.00010190921,0.000012133083],"category_scores_gemma":[0.000021511747,0.000069572474,0.00001890693,0.000049879134,0.000017386892,0.000013293263,0.000041734675,0.00004412003,7.151134e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026088353,0.000014599762,0.010378487,0.000061728235,0.0000120641935,2.270311e-8,0.000029551988,0.0000023623613,0.9867732,0.00001142285,0.0000039757547,0.0024516801],"study_design_scores_gemma":[0.00057976466,0.0003365994,0.17897457,0.000020759058,0.0000062351323,0.0000047154463,0.0000030595477,0.00040600964,0.817572,0.000043167394,0.001967343,0.00008576348],"about_ca_topic_score_codex":0.00008238475,"about_ca_topic_score_gemma":0.0000040426585,"teacher_disagreement_score":0.16920121,"about_ca_system_score_codex":0.00000420954,"about_ca_system_score_gemma":0.0000134326365,"threshold_uncertainty_score":0.2837083},"labels":[],"label_agreement":null},{"id":"W2953380509","doi":"10.1128/iai.00573-18","title":"Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia","year":2018,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Escherichia coli; Enterobacteriaceae; Microbiology; Phylogenetic tree; Salmonella; Genetics; Horizontal gene transfer; Pathogenicity island; Phylogenetics; Peptide sequence; Serotype; Gene; Sequence analysis; Colicin; Bacteria","score_opus":0.013161030611069787,"score_gpt":0.2347297465195096,"score_spread":0.2215687159084398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953380509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99937564,0.00022791344,0.00010586953,0.00002617727,0.000059904254,0.00004462368,0.0000032184284,0.000003937746,0.00015272608],"genre_scores_gemma":[0.99892485,0.0009193803,0.00009147038,0.000019808824,0.000023490493,6.603648e-7,0.000004111325,0.0000020097261,0.0000142457875],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99972284,0.000036272748,0.000065273176,0.00009810589,0.00001806199,0.000059438556],"domain_scores_gemma":[0.999834,0.0000028005988,0.000031472206,0.00008043676,0.000033032502,0.00001827237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009943063,0.00004774609,0.000059839083,0.00003139304,0.000085442174,0.000005444816,0.000023270268,0.00012412283,0.000003029532],"category_scores_gemma":[0.000023978215,0.000047006582,0.000007476158,0.000054134263,0.00025043756,0.0000030289239,0.0002300018,0.000055927485,2.86802e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003049191,0.000015466816,0.1920487,0.0000073598517,0.0000044291387,8.019163e-8,0.000040200273,1.3038402e-7,0.80519056,0.00006060776,0.0000050132,0.0025969585],"study_design_scores_gemma":[0.00027187722,0.00041049573,0.8176741,0.0000065155755,0.000004976005,0.0000107133,0.000031328284,0.000043820015,0.18037903,0.00024720177,0.0008587144,0.0000611927],"about_ca_topic_score_codex":0.0012121302,"about_ca_topic_score_gemma":0.00042166119,"teacher_disagreement_score":0.62562543,"about_ca_system_score_codex":0.000004532744,"about_ca_system_score_gemma":0.000008464297,"threshold_uncertainty_score":0.19168729},"labels":[],"label_agreement":null},{"id":"W2955628332","doi":"10.1128/iai.00127-19","title":"Eosinophils and Macrophages within the Th2-Induced Granuloma: Balancing Killing and Healing in a Tight Space","year":2019,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Granuloma; Wound healing; Immunology; Space (punctuation); Macrophage; Microbiology; In vitro; Genetics; Computer science","score_opus":0.03960394517255906,"score_gpt":0.33246338677021153,"score_spread":0.2928594415976525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955628332","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2426393,0.7563768,0.000008345148,0.000050163064,0.00019523973,0.00055614766,0.0000048522634,0.000027186876,0.00014196824],"genre_scores_gemma":[0.13730139,0.8623628,0.000010089723,0.000102756734,0.000102267346,0.000019116134,0.000012874541,0.000024298624,0.000064388456],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988011,0.00033823636,0.00034244315,0.00024417942,0.0001063355,0.00016768466],"domain_scores_gemma":[0.99922407,0.00019806385,0.00019851173,0.0002410476,0.000035826964,0.00010249752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004697157,0.0002732902,0.000837319,0.0001863972,0.0002808389,0.000069558715,0.00003684241,0.00021157069,0.000007711577],"category_scores_gemma":[0.00010431521,0.00016452826,0.00009637186,0.0002165484,0.00010362773,0.00008404352,0.00007874432,0.00072753814,0.0000042403485],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005459011,0.00012972172,0.011938874,0.02471358,0.00014693406,0.00004199118,0.0008667754,0.0000015534292,0.0002099586,0.00008820173,0.00003332809,0.96177447],"study_design_scores_gemma":[0.0043951925,0.0012401389,0.116817415,0.07117681,0.002914839,0.002168399,0.0010363677,0.0003430467,0.00014563328,0.00013631863,0.7981583,0.0014675487],"about_ca_topic_score_codex":0.00057571527,"about_ca_topic_score_gemma":0.00005447459,"teacher_disagreement_score":0.96030694,"about_ca_system_score_codex":0.000046445417,"about_ca_system_score_gemma":0.00013323476,"threshold_uncertainty_score":0.6709268},"labels":[],"label_agreement":null},{"id":"W2962714471","doi":"10.1128/iai.00089-19","title":"Vaccination against <i>Clostridium difficile</i> by Use of an Attenuated <i>Salmonella enterica</i> Serovar Typhimurium Vector (YS1646) Protects Mice from Lethal Challenge","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Clostridium difficile; Salmonella enterica; Microbiology; Virology; Serotype; Biology; Vaccination; Salmonella; Antibody; Immunology; Bacteria; Antibiotics","score_opus":0.02468098046939279,"score_gpt":0.26864163997421525,"score_spread":0.24396065950482246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2962714471","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636984,0.00034625715,0.000031733252,0.00050390826,0.00031163177,0.0011912022,0.00020871717,0.00014329991,0.0008934212],"genre_scores_gemma":[0.99736893,0.0010801466,0.000045358473,0.00015431544,0.00013862648,0.000038403956,0.0007119807,0.0000551399,0.0004070868],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997777,0.0003348896,0.00051551755,0.00049793103,0.0004689087,0.0004057937],"domain_scores_gemma":[0.9982713,0.00019610982,0.0002389121,0.0006502051,0.00039378964,0.00024970068],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029488563,0.00034199093,0.00055094506,0.00020463516,0.00016605238,0.00007530896,0.00012960748,0.00026485394,0.00031990843],"category_scores_gemma":[0.00020070093,0.000327259,0.00014059302,0.0004713101,0.000079742094,0.00037449982,0.00014832147,0.00077819254,0.00008572861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010097553,0.0015736333,0.0043115243,0.00022008814,0.00013955381,0.000012813654,0.00023353976,0.000014582633,0.9840525,0.0000059216163,0.00080187555,0.007624215],"study_design_scores_gemma":[0.0038326732,0.0020384693,0.037907366,0.00017600728,0.00009156757,0.00003951902,0.00015746093,0.0017145564,0.94486094,0.0000070524693,0.008792745,0.00038164342],"about_ca_topic_score_codex":0.0046432805,"about_ca_topic_score_gemma":0.00006457623,"teacher_disagreement_score":0.039191555,"about_ca_system_score_codex":0.00017629936,"about_ca_system_score_gemma":0.00011092304,"threshold_uncertainty_score":0.9999179},"labels":[],"label_agreement":null},{"id":"W2964236653","doi":"10.1128/iai.00227-19","title":"Intradermal Synthetic DNA Vaccination Generates <i>Leishmania</i> -Specific T Cells in the Skin and Protection against Leishmania major","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; W. W. Smith Charitable Trust","keywords":"Vaccination; Smallpox; Biology; DNA vaccination; Virology; Leishmania; Immunology; Leishmania major; Leishmaniasis; Smallpox vaccine; Immune system; Immunization; Vaccinia; Genetics","score_opus":0.02025223914365057,"score_gpt":0.25490496222870535,"score_spread":0.23465272308505478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964236653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99290764,0.00057885697,0.000052965628,0.00136408,0.0001970352,0.0013184162,0.0000029297278,0.000054220127,0.003523832],"genre_scores_gemma":[0.99645525,0.002825953,0.000028397104,0.00027206575,0.00010800155,0.00010157277,0.000010265457,0.00001887018,0.0001796261],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985336,0.00040337766,0.00027207995,0.00027544377,0.0002559296,0.0002595568],"domain_scores_gemma":[0.99931395,0.00012199132,0.00008354166,0.00030405098,0.000119296354,0.000057187288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083574734,0.00018619685,0.00025629526,0.0002437623,0.0003116341,0.00014282082,0.0000694654,0.00011253115,0.00007407352],"category_scores_gemma":[0.00008534043,0.00013809113,0.000048839887,0.00035949674,0.00008311685,0.00029666207,0.00008032126,0.0005976164,0.000051821247],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005530823,0.001149834,0.102256075,0.0008253816,0.00018102741,0.00002913216,0.0057099983,0.000039241648,0.7352714,0.00067817344,0.002176019,0.15113066],"study_design_scores_gemma":[0.0019960718,0.0005450204,0.916012,0.00009866357,0.000027267175,0.00014836226,0.00095211156,0.0007383841,0.06427768,0.00009138394,0.014905798,0.00020724648],"about_ca_topic_score_codex":0.00061289803,"about_ca_topic_score_gemma":0.00028676147,"teacher_disagreement_score":0.8137559,"about_ca_system_score_codex":0.000106010455,"about_ca_system_score_gemma":0.00002701519,"threshold_uncertainty_score":0.5631193},"labels":[],"label_agreement":null},{"id":"W2967037785","doi":"10.1128/iai.00556-19","title":"Antimalarial Activity of Human Group IIA Secreted Phospholipase A<sub>2</sub>in Relation to Enzymatic Hydrolysis of Oxidized Lipoproteins","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"Fondation pour la Recherche Médicale; Agence Nationale de la Recherche","keywords":"Plasmodium falciparum; Biology; Enzyme; Biochemistry; Phospholipase A2; Parasite hosting; Phospholipase; Hydrolysis; Secretion; Phospholipase A; Human plasma; Malaria; Immunology; Chemistry; Chromatography","score_opus":0.010815226530704526,"score_gpt":0.26354635335669496,"score_spread":0.2527311268259904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2967037785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783915,0.00001613477,0.00025504635,0.000086479304,0.000058140868,0.0013598531,0.0000042624943,0.000023109482,0.0003578175],"genre_scores_gemma":[0.99983233,0.000016062717,0.000023963788,0.000016937942,0.000021794256,0.000037605398,0.000015525588,0.000010171239,0.000025581612],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987733,0.00033132883,0.0003251236,0.00015867992,0.000248809,0.0001627642],"domain_scores_gemma":[0.9992151,0.00008035682,0.00015255193,0.00033897176,0.00011439006,0.00009860513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081160746,0.00011327664,0.0004287825,0.00032659515,0.00006622911,0.000011330228,0.00004333844,0.00010887349,0.00014845528],"category_scores_gemma":[0.00034952484,0.00010594197,0.00009130575,0.00046003365,0.00003884999,0.00015121953,0.000055753626,0.00034229882,0.000010126307],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017661364,0.00072059984,0.05619627,0.00013907814,0.00008032071,0.0000017863017,0.00033280675,0.000011715921,0.93770343,0.00010017132,0.0000028408413,0.0029448692],"study_design_scores_gemma":[0.0049885036,0.0016603677,0.6909573,0.0000823888,0.000053274598,0.000003070472,0.000036175185,0.0013988293,0.30069312,0.000053532578,0.000005318516,0.00006809849],"about_ca_topic_score_codex":0.007798469,"about_ca_topic_score_gemma":0.0004831825,"teacher_disagreement_score":0.6370103,"about_ca_system_score_codex":0.000054163538,"about_ca_system_score_gemma":0.00004696206,"threshold_uncertainty_score":0.9988087},"labels":[],"label_agreement":null},{"id":"W2967349859","doi":"10.1128/iai.00540-19","title":"Functional Characterization of an Interferon Gamma Receptor-Like Protein on Entamoeba histolytica","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Consejo Nacional de Ciencia y Tecnología; Government of Canada; Universidad Autónoma de Aguascalientes","keywords":"Entamoeba histolytica; Biology; Interferon gamma; Microbiology; Protozoa; Receptor; Virology; Immunology; Cytokine; Biochemistry","score_opus":0.014086232768532849,"score_gpt":0.24201246170124208,"score_spread":0.22792622893270922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2967349859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99559784,0.000004315832,0.00019950271,0.00008362656,0.00043377702,0.00043413934,0.0000069891094,0.00005056498,0.0031892604],"genre_scores_gemma":[0.99573034,0.000014212986,0.000030551073,0.00008474992,0.000046578283,0.00002482034,0.00025276688,0.000011284973,0.0038046776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994285,0.00006876528,0.0001741319,0.00013596032,0.00010492388,0.000087733235],"domain_scores_gemma":[0.99953425,0.000012895284,0.00009210387,0.00020839715,0.00009621021,0.000056131936],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000108566805,0.000102498205,0.00016014121,0.00013775729,0.00009129805,0.00000986159,0.000015118044,0.00007895161,0.001280237],"category_scores_gemma":[0.00001768745,0.00008838323,0.00004706146,0.0001114734,0.000037567486,0.00016572347,0.000016918842,0.00016686738,0.00014632232],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016132147,0.0022511345,0.13109592,0.0001467307,0.00016551293,0.0000014313024,0.00026592007,0.000003202877,0.8258395,0.0009717358,0.00007952336,0.03756617],"study_design_scores_gemma":[0.0019704816,0.0037567199,0.93391067,0.0001395866,0.000044397286,0.000054007363,0.0000328068,0.00014129136,0.053492095,0.000028868488,0.0063188476,0.00011021567],"about_ca_topic_score_codex":0.00037741705,"about_ca_topic_score_gemma":0.000010397068,"teacher_disagreement_score":0.8028148,"about_ca_system_score_codex":0.00014287412,"about_ca_system_score_gemma":0.00003380812,"threshold_uncertainty_score":0.9996327},"labels":[],"label_agreement":null},{"id":"W2968866743","doi":"10.1128/iai.00591-19","title":"Potential Mechanisms of Mucin-Enhanced Acinetobacter baumannii Virulence in the Mouse Model of Intraperitoneal Infection","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; Dalhousie University; National Research Council Canada","funders":"National Research Council Canada; Government of Canada","keywords":"Mucin; Acinetobacter baumannii; Virulence; Microbiology; Infectivity; Biology; Intraperitoneal injection; Peritoneal cavity; Innate immune system; Deferoxamine; Immune system; Bacteria; Immunology; Virus; Biochemistry; Gene; Pseudomonas aeruginosa","score_opus":0.007438673383343789,"score_gpt":0.23410109438190763,"score_spread":0.22666242099856385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2968866743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9844908,0.000015051436,0.014853904,0.000010676322,0.00010982367,0.00017116837,0.0000077420555,0.000005396564,0.0003354283],"genre_scores_gemma":[0.99937654,0.0002895139,0.00014759286,0.000043387834,0.000017542652,0.0000034323286,0.000024693101,0.0000069394455,0.00009038601],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993753,0.000107931635,0.00021316524,0.00012990275,0.00007694303,0.0000967448],"domain_scores_gemma":[0.99952626,0.000007670341,0.00011901643,0.0002639972,0.00006901732,0.0000140186285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023582691,0.00009084382,0.00012886884,0.000046373178,0.00003750721,0.000010927961,0.00007677684,0.00011542044,0.000020370153],"category_scores_gemma":[0.000027374823,0.00007364893,0.000048398255,0.00007347829,0.00007511004,0.000014759029,0.00005222714,0.000117258525,0.0000017053212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011459144,0.00008811471,0.012364056,0.00004144536,0.000013480629,4.5273755e-8,0.000106304615,0.00053721294,0.9861537,0.00015053402,0.000007923686,0.00042259492],"study_design_scores_gemma":[0.0004081418,0.00028184417,0.15969297,0.000017394155,0.000009001064,0.0000036382592,0.00006480635,0.00094328844,0.838245,0.00022047729,0.000030966825,0.00008248228],"about_ca_topic_score_codex":0.0004420658,"about_ca_topic_score_gemma":0.000116510535,"teacher_disagreement_score":0.14790872,"about_ca_system_score_codex":0.000008014396,"about_ca_system_score_gemma":0.000021655847,"threshold_uncertainty_score":0.30033162},"labels":[],"label_agreement":null},{"id":"W2972722913","doi":"10.1128/iai.00532-19","title":"Resolution and Cooccurrence Patterns of Gardnerella leopoldii, G. swidsinskii, G. piotii, and G. vaginalis within the Vaginal Microbiome","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"B.C. Women's Hospital & Health Centre; Women's Health Research Institute; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Gardnerella vaginalis; Dysbiosis; Biology; Microbiome; Bacterial vaginosis; Microbiology; Virulence; Vaginitis; Immunology; Genetics; Gene","score_opus":0.016024541142928627,"score_gpt":0.27313706738502924,"score_spread":0.2571125262421006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972722913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960925,0.001879653,0.00014606702,0.00020775995,0.0005422657,0.00035143492,0.000031020525,0.0000344658,0.0007148503],"genre_scores_gemma":[0.99825895,0.0010254274,0.0000128014635,0.000032072665,0.00001656047,0.000010196169,0.000026991958,0.000008936221,0.0006080911],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987156,0.00049474183,0.00024954535,0.00028945494,0.00004534102,0.00020531786],"domain_scores_gemma":[0.99908084,0.0001952629,0.00014520795,0.00038031788,0.00017331088,0.000025091456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000837545,0.00015827516,0.00021873461,0.00019257095,0.00037847363,0.00004502123,0.00008610779,0.00014549645,0.00018607508],"category_scores_gemma":[0.00012751951,0.000119955504,0.000034642155,0.00020448885,0.00061512995,0.00019863575,0.00016334638,0.0005999286,0.00003715982],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014371106,0.00015909098,0.52611476,0.00010736208,0.00012268091,3.8275752e-7,0.0009526138,0.00000806756,0.46689013,0.00087275234,0.00019183209,0.004436621],"study_design_scores_gemma":[0.0011106818,0.0004863936,0.92134863,0.00008459602,0.000044864017,0.00051102205,0.00050316437,0.000024907704,0.065649986,0.00020421624,0.009836754,0.00019479725],"about_ca_topic_score_codex":0.0049848435,"about_ca_topic_score_gemma":0.00015949579,"teacher_disagreement_score":0.40124014,"about_ca_system_score_codex":0.00002991838,"about_ca_system_score_gemma":0.00004490652,"threshold_uncertainty_score":0.75356257},"labels":[],"label_agreement":null},{"id":"W2974282048","doi":"10.1128/iai.00279-19","title":"Entamoeba histolytica Interaction with Enteropathogenic Escherichia coli Increases Parasite Virulence and Inflammation in Amebiasis","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fundación Miguel Alemán, A.C.; Natural Sciences and Engineering Research Council of Canada; Consejo Nacional de Ciencia y Tecnología; Government of Canada; University of Calgary","keywords":"Entamoeba histolytica; Virulence; Biology; Microbiology; Proinflammatory cytokine; Enteropathogenic Escherichia coli; Inflammation; Immunology; Gene","score_opus":0.00860648568093205,"score_gpt":0.25216103395352857,"score_spread":0.2435545482725965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2974282048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970856,0.00006697219,0.00011191614,0.000045545083,0.00009135743,0.0003622745,0.0000021146986,0.0000433461,0.0021909182],"genre_scores_gemma":[0.9992102,0.00036887865,0.000083587314,0.00007031322,0.00001956013,0.00003060605,0.000023341661,0.000009656691,0.00018386733],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993954,0.00008960667,0.00016840627,0.00015792726,0.00007756827,0.00011109391],"domain_scores_gemma":[0.9995994,0.000051248957,0.000083633604,0.00015220711,0.000053100237,0.00006044235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000121218654,0.00012106387,0.00017747968,0.00017000537,0.000100634184,0.000028770146,0.000012906665,0.000060460337,0.0001412125],"category_scores_gemma":[0.00003908191,0.000100695426,0.000026046084,0.00017810041,0.000059120284,0.0003025554,0.000025605419,0.00020390273,0.00003623575],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032910015,0.00022702232,0.9790351,0.00005163531,0.000046440364,0.000005657278,0.00022103704,0.000005912078,0.011710765,0.000047083457,0.0000042318998,0.008316061],"study_design_scores_gemma":[0.0019036894,0.0006780055,0.99283516,0.00016770173,0.00007514812,0.00019922784,0.00014906438,0.0005147676,0.002514817,0.000020068343,0.00084318063,0.00009917253],"about_ca_topic_score_codex":0.004423035,"about_ca_topic_score_gemma":0.00058687635,"teacher_disagreement_score":0.013800103,"about_ca_system_score_codex":0.00014808653,"about_ca_system_score_gemma":0.000029332783,"threshold_uncertainty_score":0.6686335},"labels":[],"label_agreement":null},{"id":"W2980161083","doi":"10.1128/iai.00678-19","title":"Early Growth Response 1 Deficiency Protects the Host against Pseudomonas aeruginosa Lung Infection","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; CXCL2; CXCL1; Proinflammatory cytokine; Pseudomonas aeruginosa; Chemokine; Microbiology; Immune system; Immunology; Tumor necrosis factor alpha; Inflammation; Bacteria; Chemokine receptor","score_opus":0.006958337140128836,"score_gpt":0.2211975115258504,"score_spread":0.21423917438572157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980161083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99408996,0.00058602326,0.00018689522,0.0003278099,0.0009435054,0.00079647545,0.0000028213162,0.00016124982,0.002905286],"genre_scores_gemma":[0.9979303,0.00037994792,0.0000038402773,0.00015635973,0.000022632144,0.00006302746,0.000025495283,0.000015688356,0.001402693],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997677,0.0014311746,0.00030678295,0.0002225025,0.00005725594,0.0003052756],"domain_scores_gemma":[0.9989233,0.00032249282,0.00017793119,0.00039600005,0.00016099856,0.00001928718],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013408015,0.0002067178,0.00019682715,0.00022242336,0.000827922,0.000079392084,0.00011426644,0.00026949533,0.00018788394],"category_scores_gemma":[0.0004182235,0.00015521566,0.000101826365,0.00035095497,0.00018732267,0.00041924202,0.000110088506,0.00067183614,0.00081556867],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012002367,0.00010548717,0.055272486,0.000042768756,0.000065008746,8.7909655e-7,0.0012212427,0.00000505104,0.93815476,0.00070728763,0.00023470703,0.0029901012],"study_design_scores_gemma":[0.0010818132,0.00040823538,0.8470955,0.00004752968,0.000022773616,0.00007896728,0.00008034536,0.000022759164,0.13959429,0.000055549346,0.011307769,0.00020448792],"about_ca_topic_score_codex":0.0019380837,"about_ca_topic_score_gemma":0.00002726631,"teacher_disagreement_score":0.79856044,"about_ca_system_score_codex":0.00008184253,"about_ca_system_score_gemma":0.00007811394,"threshold_uncertainty_score":0.9999624},"labels":[],"label_agreement":null},{"id":"W2980494997","doi":"10.1128/iai.00656-19","title":"A Loss-of-Function Mutation in the Integrin Alpha L (<i>Itgal</i>) Gene Contributes to Susceptibility to Salmonella enterica Serovar Typhimurium Infection in Collaborative Cross Strain CC042","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"Canadian Institutes of Health Research; AgroParisTech; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Salmonella enterica; Biology; Salmonella; Serotype; Microbiology; Gene; Bacteria; Strain (injury); Enterobacteriaceae; Virology; Salmonella infection; Genetics; Escherichia coli","score_opus":0.01733391686996255,"score_gpt":0.27855276621527914,"score_spread":0.2612188493453166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980494997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785763,0.000041539326,0.00013097287,0.00056830386,0.0003288808,0.00079378,0.000039692895,0.000026748345,0.00021246988],"genre_scores_gemma":[0.99909085,0.00006792648,0.000015505002,0.0006313581,0.000042944837,0.000053155673,0.000072757604,0.0000013274293,0.000024181818],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99813056,0.0008481382,0.00041287675,0.00028492458,0.00010034925,0.00022314701],"domain_scores_gemma":[0.9990936,0.00043446635,0.00012337163,0.00010867855,0.00018940005,0.00005046437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014553593,0.00015356063,0.00027690985,0.00007447844,0.00010421044,0.00005599839,0.000101980884,0.0001515714,0.00008353447],"category_scores_gemma":[0.00033946676,0.00007227125,0.000054782504,0.0011863156,0.00007060533,0.00016817002,0.00006643303,0.00026137076,0.000032218657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003310121,0.00017859846,0.8298665,0.000009730753,0.000009753267,7.2758945e-7,0.000581524,0.00016336203,0.16279237,0.00008395509,0.000028041793,0.005954366],"study_design_scores_gemma":[0.0004004012,0.0010331982,0.99315417,0.000025779727,0.000006169999,0.000007260804,0.00048269992,0.00005628342,0.0029011117,0.00064267294,0.001170604,0.00011962751],"about_ca_topic_score_codex":0.01196256,"about_ca_topic_score_gemma":0.017211145,"teacher_disagreement_score":0.16328764,"about_ca_system_score_codex":0.000094780975,"about_ca_system_score_gemma":0.000015085281,"threshold_uncertainty_score":0.99461687},"labels":[],"label_agreement":null},{"id":"W2989671497","doi":"10.1128/iai.00845-19","title":"ZBTB7B (ThPOK) Is Required for Pathogenesis of Cerebral Malaria and Protection against Pulmonary Tuberculosis","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Plasmodium berghei; Cerebral Malaria; Biology; Malaria; Tuberculosis; Mutation; Pathogenesis; Virology; Chloroquine; Immunology; Genetics; Gene; Plasmodium falciparum; Pathology; Medicine","score_opus":0.015884410942201384,"score_gpt":0.23792003330569828,"score_spread":0.2220356223634969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2989671497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634445,0.0009320504,0.00015402217,0.00017620555,0.0005301443,0.000612379,0.00004150824,0.00004577904,0.0011634383],"genre_scores_gemma":[0.9973911,0.00042151296,0.000022848226,0.00012672464,0.000011986158,0.00005323835,0.000042683943,0.000014836552,0.0019150358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990669,0.0002624163,0.00026447134,0.00019932374,0.00002223916,0.00018463982],"domain_scores_gemma":[0.9994478,0.000082937404,0.00012158649,0.00022292632,0.00010857923,0.000016132464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030145093,0.00015236624,0.0002571272,0.00015290406,0.00021975892,0.000016532545,0.00005224093,0.00025349832,0.0002590317],"category_scores_gemma":[0.00007693431,0.00013976147,0.00009733122,0.000099826924,0.00013262643,0.00017560399,0.00007736537,0.00018577458,0.000044015393],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087560015,0.00012091871,0.012389189,0.00012036711,0.00013379967,1.4209724e-7,0.00030487098,5.7589955e-7,0.9586052,0.00017958393,0.00010636323,0.027163435],"study_design_scores_gemma":[0.0016938328,0.0010323897,0.40619364,0.00009496635,0.00006615737,0.00011568119,0.0003214384,0.000110151384,0.57160395,0.00013334802,0.018376982,0.00025744716],"about_ca_topic_score_codex":0.0006065081,"about_ca_topic_score_gemma":0.000014445998,"teacher_disagreement_score":0.39380446,"about_ca_system_score_codex":0.00002496956,"about_ca_system_score_gemma":0.000024458735,"threshold_uncertainty_score":0.56993073},"labels":[],"label_agreement":null},{"id":"W2994835831","doi":"10.1128/iai.00787-19","title":"Inflammatory Monocytes and Neutrophils Regulate Streptococcus suis-Induced Systemic Inflammation and Disease but Are Not Critical for the Development of Central Nervous System Disease in a Mouse Model of Infection","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal","funders":"Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Streptococcus suis; Inflammation; Biology; Immunology; Disease; Central nervous system; Systemic inflammation; Immune system; Microbiology; Medicine; Pathology; Virulence; Neuroscience","score_opus":0.03126233294751528,"score_gpt":0.27922376417822903,"score_spread":0.24796143123071374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2994835831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972619,0.00014135602,0.00055157114,0.00005160506,0.000095921016,0.0018130417,0.00003292645,0.000041639152,0.000010031232],"genre_scores_gemma":[0.99952346,0.00009840813,0.00003837307,0.000005449162,0.000023181645,0.00025826326,0.000013613302,0.000014185048,0.000025050367],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894077,0.00009169717,0.00048726192,0.00019729158,0.000114488175,0.0001684684],"domain_scores_gemma":[0.9990215,0.00017392254,0.00019687918,0.00023903183,0.00017483374,0.00019384555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021502656,0.00016997426,0.000310653,0.00018012941,0.00016653576,0.000026744458,0.000020493904,0.00008309049,0.0000023899277],"category_scores_gemma":[0.00020535951,0.00013140569,0.000067165834,0.00009835203,0.00008895521,0.00018715627,0.000048917474,0.00013486996,6.095884e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000694665,0.00017315871,0.9544269,0.0025129514,0.00009161271,0.0000010203593,0.00033899606,0.0011743482,0.03716305,0.00045788966,4.5900248e-7,0.002964939],"study_design_scores_gemma":[0.0018636867,0.00013652253,0.9409234,0.0006941752,0.0001617181,0.0000062767494,0.00016245908,0.044035167,0.011853837,0.00005185793,0.0000026155294,0.00010831234],"about_ca_topic_score_codex":0.00046770845,"about_ca_topic_score_gemma":0.0000833376,"teacher_disagreement_score":0.042860817,"about_ca_system_score_codex":0.00014056754,"about_ca_system_score_gemma":0.0001454695,"threshold_uncertainty_score":0.53585684},"labels":[],"label_agreement":null},{"id":"W3000248785","doi":"10.1128/iai.00950-19","title":"Streptococcus suis Serotype 2 Infection Causes Host Immunomodulation through Induction of Thymic Atrophy","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Biology; Immune system; Serotype; Virulence; Pathogen; Microbiology; Virology; Immunology; Gene","score_opus":0.05140176914627326,"score_gpt":0.3091120523815268,"score_spread":0.2577102832352535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3000248785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962629,0.000118446915,0.0008266864,0.00020375992,0.00031157737,0.00065920124,0.000010269963,0.00015678421,0.0014503557],"genre_scores_gemma":[0.9989304,0.0005552158,0.000084932275,0.00010568969,0.0001383798,0.000047235833,0.00007551096,0.000019302064,0.000043320804],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99906754,0.00010109624,0.00033244598,0.00022413606,0.00012947689,0.00014531557],"domain_scores_gemma":[0.9992468,0.0000355916,0.00018586729,0.00022661239,0.00021729784,0.00008785933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007487253,0.00018622875,0.0002869387,0.000114528535,0.00024348575,0.000028044224,0.0000213356,0.00015024461,0.0002835684],"category_scores_gemma":[0.00012347352,0.00016917252,0.00012783916,0.00052021595,0.00010488938,0.00038596994,0.000042882253,0.0002995115,0.000039363058],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017921299,0.00032229203,0.940261,0.00010133138,0.00020434706,0.0000014825987,0.0004159061,0.000039483202,0.052013986,0.00014669239,0.00006226939,0.0062519936],"study_design_scores_gemma":[0.0015204068,0.0014433988,0.95979,0.000060614482,0.00016881309,0.000034332366,0.0000565932,0.0001384994,0.034518708,0.000112043956,0.0020274362,0.00012918665],"about_ca_topic_score_codex":0.0075676874,"about_ca_topic_score_gemma":0.000085012936,"teacher_disagreement_score":0.019528965,"about_ca_system_score_codex":0.00009211759,"about_ca_system_score_gemma":0.000049677223,"threshold_uncertainty_score":0.999041},"labels":[],"label_agreement":null},{"id":"W3006876275","doi":"10.1128/iai.00104-20","title":"<i>De Novo</i> Purine Biosynthesis Is Required for Intracellular Growth of Staphylococcus aureus and for the Hypervirulence Phenotype of a <i>purR</i> Mutant","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Virulence; Derepression; Biology; Phenotype; Staphylococcus aureus; Mutant; Microbiology; Virulence factor; Repressor; Human pathogen; Purine; Pathogen; Gene; Genetics; Bacteria; Transcription factor; Psychological repression; Gene expression; Biochemistry; Enzyme","score_opus":0.029799697625731637,"score_gpt":0.26910774509200136,"score_spread":0.2393080474662697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006876275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9818978,0.0012017549,0.013297692,0.0022193033,0.00006262227,0.0010089929,0.00017964671,0.000027815338,0.00010438161],"genre_scores_gemma":[0.996766,0.0013338146,0.0009372502,0.0008144327,0.00006309869,0.000040286774,0.0000058382143,0.000019699348,0.00001959466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99916303,0.000045900033,0.0003324672,0.00017878252,0.000100429694,0.00017936807],"domain_scores_gemma":[0.99872977,0.00046871888,0.00019840129,0.0002225191,0.00029620324,0.00008440854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033862187,0.00014467664,0.00035122267,0.00004980103,0.00015179616,0.000015502275,0.00008372276,0.00009031068,0.000023906836],"category_scores_gemma":[0.0008153547,0.0001103147,0.00011524113,0.00022214856,0.00030139674,0.000071799404,0.00005597527,0.00013952845,5.0106473e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015043257,0.00013826361,0.0061836955,0.0010970416,0.00012894667,8.47636e-7,0.0008952297,0.0000019445358,0.9829542,0.00036767233,0.00037759676,0.0063502598],"study_design_scores_gemma":[0.002063098,0.0010859566,0.012438476,0.00016912166,0.0003413937,0.000008661087,0.00028015795,0.00096466386,0.971618,0.00035331945,0.010518765,0.00015839994],"about_ca_topic_score_codex":0.00031865767,"about_ca_topic_score_gemma":0.000015103989,"teacher_disagreement_score":0.014868194,"about_ca_system_score_codex":0.000020690351,"about_ca_system_score_gemma":0.00007300338,"threshold_uncertainty_score":0.4498503},"labels":[],"label_agreement":null},{"id":"W3013640721","doi":"10.1128/iai.00171-20","title":"Mice Lacking γδ T Cells Exhibit Impaired Clearance of Pseudomonas aeruginosa Lung Infection and Excessive Production of Inflammatory Cytokines","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Cell Function and Interaction","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Pseudomonas aeruginosa; Biology; Microbiology; Lung; Proinflammatory cytokine; Lung infection; Immunology; Inflammation; Pseudomonadales; Cytokine; Bacteria; Medicine; Internal medicine","score_opus":0.012760745455933687,"score_gpt":0.22897940732236421,"score_spread":0.21621866186643052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3013640721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580926,0.000840624,0.00032931185,0.0001439052,0.002134847,0.0002821153,0.000003005853,0.000089406705,0.000367553],"genre_scores_gemma":[0.99817264,0.0013036566,0.000014095383,0.000081176804,0.000060570415,0.000011212222,0.00002720628,0.000014411165,0.00031503968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998767,0.00033258897,0.00045629294,0.00024327863,0.00004504285,0.00015575963],"domain_scores_gemma":[0.99905217,0.00007474665,0.00043879327,0.00016086345,0.00024622565,0.000027211901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025743977,0.00018381215,0.000306702,0.0001588009,0.000248205,0.00001671925,0.000046253226,0.0002044672,0.00018914203],"category_scores_gemma":[0.00019454847,0.0001835406,0.000084044164,0.00023896314,0.00024964023,0.0004612868,0.00007612517,0.00041370525,0.000019666322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005644691,0.00009102835,0.039823994,0.0003029286,0.0001070761,3.1253802e-7,0.0013880541,0.00006676913,0.952999,0.000045561406,0.0009044196,0.0037063882],"study_design_scores_gemma":[0.0009402023,0.00034590732,0.17990938,0.00011917008,0.000061422455,0.000055906257,0.0002641694,0.00011688731,0.8104949,0.000013963342,0.007506062,0.00017200316],"about_ca_topic_score_codex":0.00093398616,"about_ca_topic_score_gemma":0.000043356722,"teacher_disagreement_score":0.14250408,"about_ca_system_score_codex":0.000032550357,"about_ca_system_score_gemma":0.000031066167,"threshold_uncertainty_score":0.74845684},"labels":[],"label_agreement":null},{"id":"W3015451581","doi":"10.1128/iai.00017-20","title":"Salmonella enterica Infection of Murine and Human Enteroid-Derived Monolayers Elicits Differential Activation of Epithelium-Intrinsic Inflammasomes","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; NIH Office of the Director; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; Crohn's and Colitis Canada; University of Washington","keywords":"Inflammasome; Salmonella enterica; Biology; Salmonella; Microbiology; Caspase 1; Signal transduction; Caspase; Intestinal epithelium; Cell biology; Apoptosis; Epithelium; Immunology; Programmed cell death; Inflammation; Bacteria; Genetics","score_opus":0.011214315295703603,"score_gpt":0.2347398322988438,"score_spread":0.2235255170031402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3015451581","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860466,0.0000908477,0.00081522943,0.00006819496,0.000062383704,0.0001619211,0.0000043722566,0.0000146932925,0.00017772565],"genre_scores_gemma":[0.9986936,0.0010887866,0.00001216952,0.000050288425,0.000047912825,0.0000074283607,0.00007181802,0.0000120408995,0.00001595244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992913,0.00009952323,0.0002743545,0.00016011269,0.00006827577,0.00010641803],"domain_scores_gemma":[0.999522,0.000009254347,0.0001905835,0.0001438005,0.0000919704,0.00004243944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065966546,0.00013753002,0.00019542815,0.00007522125,0.000103186496,0.000013705255,0.000043457178,0.00010326544,0.00002167303],"category_scores_gemma":[0.00006445485,0.00013859119,0.00006955475,0.00009533594,0.00010718557,0.000019520285,0.000118456825,0.000113848546,7.714039e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018170029,0.00007333004,0.087612435,0.00008200195,0.000081679966,8.071355e-8,0.0003128023,0.0000146268485,0.9069808,0.000016351822,0.000020305755,0.004623898],"study_design_scores_gemma":[0.0007671839,0.0005789701,0.37628308,0.000017369659,0.0000186178,0.0000019710014,0.00005042469,0.000030664018,0.6214186,0.000012801533,0.0007321868,0.00008813438],"about_ca_topic_score_codex":0.00084589265,"about_ca_topic_score_gemma":0.000033828186,"teacher_disagreement_score":0.28867063,"about_ca_system_score_codex":0.0000064475003,"about_ca_system_score_gemma":0.000012627399,"threshold_uncertainty_score":0.5651584},"labels":[],"label_agreement":null},{"id":"W3018720493","doi":"10.1128/iai.00230-20","title":"Cathelicidins Mitigate Staphylococcus aureus Mastitis and Reduce Bacterial Invasion in Murine Mammary Epithelium","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Staphylococcus aureus; Biology; Mastitis; Microbiology; Epithelium; Mammary gland; Staphylococcal infections; Immunology; Bacteria","score_opus":0.03481356375272293,"score_gpt":0.23147312052338898,"score_spread":0.19665955677066604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3018720493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961108,0.0001236375,0.000014053697,0.0026405181,0.00017010089,0.00014955673,0.000041928182,0.000058892896,0.0006905011],"genre_scores_gemma":[0.9976254,0.0014762135,0.00003237293,0.0005837412,0.00017807134,0.000009407264,0.000050748076,8.7730587e-7,0.00004316573],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991947,0.00020655457,0.0001830799,0.00019737858,0.0000696675,0.00014864583],"domain_scores_gemma":[0.99967915,0.00007888263,0.000052080566,0.000048606955,0.000026778504,0.000114507005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020781432,0.0001126082,0.00014663648,0.000015289517,0.00018781723,0.00006921365,0.00008002788,0.000078933685,0.0002197244],"category_scores_gemma":[0.00013115058,0.00005751512,0.00003061561,0.00018781287,0.00007353774,0.00021254807,0.00017090628,0.00020471193,0.000009368405],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101202786,0.00009693407,0.017503522,0.000041862484,0.000008922799,0.0000089659,0.0006607458,0.0000019432246,0.87746686,0.00053217175,0.0004155943,0.103161275],"study_design_scores_gemma":[0.00049031555,0.00051159854,0.93568534,0.000046211913,0.0000065562067,0.000013798999,0.00013871188,0.00006860726,0.024991453,0.00072408305,0.037100904,0.00022240156],"about_ca_topic_score_codex":0.004360434,"about_ca_topic_score_gemma":0.002131367,"teacher_disagreement_score":0.91818184,"about_ca_system_score_codex":0.00001256818,"about_ca_system_score_gemma":0.000007808521,"threshold_uncertainty_score":0.65917015},"labels":[],"label_agreement":null},{"id":"W3045476890","doi":"10.1128/iai.00303-20","title":"The <i>Salmonella</i> LysR Family Regulator RipR Activates the SPI-13-Encoded Itaconate Degradation Cluster","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Operon; Biology; Isocitrate lyase; Glyoxylate cycle; Escherichia coli; Phagosome; Bacteria; Salmonella; Microbiology; lac operon; Biochemistry; Metabolite; Enterobacteriaceae; Gene; Enzyme; Phagocytosis; Genetics","score_opus":0.011921384360604817,"score_gpt":0.21836023601617863,"score_spread":0.2064388516555738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045476890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99412835,0.00049681944,0.00031927816,0.0040726536,0.00026392238,0.00017763281,0.000006002451,0.00002608609,0.00050925306],"genre_scores_gemma":[0.99618846,0.0020249945,0.00002840888,0.0013538225,0.00016394311,0.000012773772,0.000035309557,0.000011393398,0.00018086594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993191,0.00013676743,0.00015733464,0.00017735563,0.000059940114,0.00014952531],"domain_scores_gemma":[0.99951094,0.000024711595,0.00008537322,0.00026784954,0.00006670035,0.00004443339],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019590417,0.00012229919,0.00008649073,0.000012689078,0.00046079315,0.00008525616,0.00014441772,0.00018402406,0.0000052707574],"category_scores_gemma":[0.000099538236,0.00007402029,0.000053205138,0.00010450596,0.00018209778,0.0000061905853,0.00018072172,0.0001955996,0.000007657207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101567886,0.000016239259,0.0009894092,0.000004799699,0.000037086804,1.0796934e-7,0.00003730017,0.000009821785,0.98691756,0.000074400195,0.0012849264,0.0105267605],"study_design_scores_gemma":[0.00043685813,0.00032417232,0.03142999,0.0000040247055,0.000020303583,0.000010770015,0.00011246359,0.00027584654,0.71299803,0.00015364005,0.25408766,0.00014623482],"about_ca_topic_score_codex":0.00015931763,"about_ca_topic_score_gemma":0.0000782834,"teacher_disagreement_score":0.27391955,"about_ca_system_score_codex":0.0000066104903,"about_ca_system_score_gemma":0.00002466146,"threshold_uncertainty_score":0.3544095},"labels":[],"label_agreement":null},{"id":"W3047263260","doi":"10.1128/iai.00377-20","title":"Comparative Study of Immunogenic Properties of Purified Capsular Polysaccharides from<i>Streptococcus suis</i>Serotypes 3, 7, 8, and 9: the Serotype 3 Polysaccharide Induces an Opsonizing IgG Response","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Agriculture and Agri-Food Canada; Alberta Glycomics Centre; Université de Montréal; University of Alberta","funders":"Canadian Glycomics Network; Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Serotype; Microbiology; Biology; Polysaccharide; Streptococcus pneumoniae; Streptococcus suis; Streptococcaceae; Bacterial capsule; Streptococcus; Immunoglobulin G; Virology; Antibody; Bacteria; Immunology; Virulence; Biochemistry; Antibiotics; Gene","score_opus":0.08162911751322077,"score_gpt":0.30564351949372875,"score_spread":0.22401440198050798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047263260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971845,0.0010989157,0.0000068587037,0.00016916993,0.00006244327,0.0013756135,0.000013519893,0.0000482139,0.000040744253],"genre_scores_gemma":[0.9996193,0.00015039838,0.000017606839,0.00005885376,0.000029974379,0.00009196361,0.000005550377,0.000012463451,0.000013896923],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99845433,0.00061318435,0.00041981228,0.00023088501,0.00015164218,0.00013015572],"domain_scores_gemma":[0.99898654,0.00015855717,0.00023307207,0.0003181347,0.00020313899,0.0001005688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003391478,0.00019722716,0.0005557852,0.000099812845,0.00028102027,0.000039436483,0.00006929114,0.000078613215,0.00004143994],"category_scores_gemma":[0.000227488,0.00012768307,0.00007447652,0.00030940032,0.00032402715,0.00021509785,0.00009915609,0.00028589502,0.000002436827],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058748242,0.00083083654,0.36541384,0.000036399935,0.0006526621,0.0000020318978,0.016175421,0.0000077518625,0.6103418,0.000017977636,0.0000029467262,0.00064351613],"study_design_scores_gemma":[0.004734744,0.00233818,0.6352875,0.000087537825,0.00032083492,0.000007445101,0.008165518,0.000120528304,0.3487922,0.000029991574,0.000012637218,0.00010287872],"about_ca_topic_score_codex":0.025036406,"about_ca_topic_score_gemma":0.00026060495,"teacher_disagreement_score":0.26987368,"about_ca_system_score_codex":0.000023114875,"about_ca_system_score_gemma":0.000070229195,"threshold_uncertainty_score":0.981456},"labels":[],"label_agreement":null},{"id":"W3095514887","doi":"10.1128/iai.00639-20","title":"(p)ppGpp-Dependent Regulation of the Nucleotide Hydrolase PpnN Confers Complement Resistance in Salmonella enterica Serovar Typhimurium","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; Canadian Institutes of Health Research; Novo Nordisk Foundation Center for Basic Metabolic Research; Novo Nordisk Fonden; Novo Nordisk; Consejo Nacional de Ciencia y Tecnología; Government of Canada","keywords":"Salmonella enterica; Biology; Salmonella; Microbiology; Serotype; Enterobacteriaceae; Virology; Nucleotide; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.020084359807749613,"score_gpt":0.2617539305530015,"score_spread":0.2416695707452519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3095514887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969673,0.00015838555,0.00014201972,0.00073103135,0.00004731383,0.00019309887,0.000009682558,0.0000064701653,0.0017446851],"genre_scores_gemma":[0.99924594,0.00033345775,0.00005993337,0.00020605535,0.000024573614,0.000009109854,0.000011548509,0.0000061100804,0.00010328129],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992996,0.00019861897,0.00016487758,0.00013220633,0.00010125646,0.00010345795],"domain_scores_gemma":[0.9996325,0.000014935139,0.00007543333,0.0001753929,0.000066864326,0.000034926295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001842976,0.000075598786,0.00009723403,0.000017989627,0.000097992546,0.000010879383,0.00007566419,0.000037054888,0.00001735891],"category_scores_gemma":[0.0001539181,0.00006317902,0.000036867426,0.000114840026,0.00009739179,0.0000046886494,0.00019711921,0.0001195284,0.0000013202313],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002621201,0.00008696209,0.09072397,0.000062315215,0.000045597902,4.0799236e-7,0.00038988044,0.00010501457,0.907405,0.000112454,0.0005700761,0.0002362088],"study_design_scores_gemma":[0.0010201905,0.00021587717,0.8615865,0.00003064265,0.000010548017,0.0000011936959,0.00019203394,0.00046446893,0.11745309,0.000079237936,0.018826423,0.00011976705],"about_ca_topic_score_codex":0.00032096377,"about_ca_topic_score_gemma":0.0007057319,"teacher_disagreement_score":0.7899519,"about_ca_system_score_codex":0.000018312694,"about_ca_system_score_gemma":0.00002871247,"threshold_uncertainty_score":0.25763655},"labels":[],"label_agreement":null},{"id":"W3100728266","doi":"10.1128/iai.00060-20","title":"Genetic Variation in Toll-Like Receptor 5 and Colonization with Flagellated Bacterial Vaginosis-Associated Bacteria","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Achievement Rewards for College Scientists Foundation; National Human Genome Research Institute; American Society for Microbiology","keywords":"Bacterial vaginosis; Biology; Bacteria; Microbiology; Colonization; Immunology; Genetics","score_opus":0.015530622373704206,"score_gpt":0.2400907393926733,"score_spread":0.2245601170189691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3100728266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984288,0.0000865275,0.00024030718,0.00027061542,0.00034710494,0.0003717121,0.000011398381,0.0000872303,0.0001562621],"genre_scores_gemma":[0.99934465,0.00026833944,0.0000430844,0.00006125999,0.000029276487,0.000024166698,0.00012857713,0.0000135737455,0.00008709638],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998671,0.0006424378,0.00021137111,0.00026362287,0.00003213316,0.00017944654],"domain_scores_gemma":[0.999523,0.00008390198,0.00009328906,0.00012986251,0.00013883453,0.000031153762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024885713,0.00013167987,0.00018728607,0.00013354945,0.00024435192,0.000056931458,0.000041190906,0.00019363924,0.00053397316],"category_scores_gemma":[0.00026687363,0.00012393515,0.000015630945,0.00041760816,0.0001264278,0.00021485936,0.000054446034,0.0003688196,0.000056946654],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043458215,0.00016911545,0.14908859,0.000019353343,0.00009597321,8.4992536e-7,0.0011612502,0.000019569614,0.84677047,0.000016302969,0.00012582402,0.002098102],"study_design_scores_gemma":[0.001795568,0.00060421025,0.9758149,0.000018919558,0.000022136375,0.000028051965,0.000039433526,0.000058035388,0.017864833,0.0000141375085,0.0035992744,0.00014052389],"about_ca_topic_score_codex":0.0014079957,"about_ca_topic_score_gemma":0.00024952134,"teacher_disagreement_score":0.82890564,"about_ca_system_score_codex":0.0000738644,"about_ca_system_score_gemma":0.000052261683,"threshold_uncertainty_score":0.58466315},"labels":[],"label_agreement":null},{"id":"W3106700137","doi":"10.1128/iai.00719-20","title":"Bile Salts Differentially Enhance Resistance of Enterohemorrhagic Escherichia coli O157:H7 to Host Defense Peptides","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Escherichia coli; Microbiology; Host (biology); Escherichia coli Proteins; Enterobacteriaceae; Resistance (ecology); Ecology; Biochemistry","score_opus":0.015049796180270199,"score_gpt":0.2723341858612078,"score_spread":0.2572843896809376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3106700137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622357,0.0004970612,0.0013770362,0.0003468522,0.000075339245,0.00021836982,0.000017628607,0.000020049345,0.001224122],"genre_scores_gemma":[0.9977654,0.0008360392,0.00045407654,0.00044071925,0.00007301984,0.00003078207,0.000014567834,0.000013216382,0.00037214384],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914014,0.00015186906,0.00018493515,0.00022864834,0.00011356024,0.00018082524],"domain_scores_gemma":[0.9993969,0.000025887126,0.00007495654,0.00021809328,0.00016141553,0.00012274401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012865059,0.0001347484,0.00017708015,0.000029478619,0.00014306777,0.000025583635,0.00010607434,0.00006801227,0.000021829324],"category_scores_gemma":[0.0004918751,0.00012907844,0.000061486324,0.0001889141,0.000109790984,0.000006864756,0.00026548415,0.00015229544,0.00000801164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028395705,0.00007810941,0.014422329,0.000098395045,0.000050718318,6.863676e-7,0.0002451447,0.0000033446172,0.98351324,0.000018122808,0.0009418987,0.00034402986],"study_design_scores_gemma":[0.0005014764,0.0008515756,0.2699248,0.000043317134,0.000018261098,0.0000012700017,0.000110894354,0.000029943441,0.70815945,0.000016248427,0.020125581,0.00021720851],"about_ca_topic_score_codex":0.00016966369,"about_ca_topic_score_gemma":0.00048195585,"teacher_disagreement_score":0.27535382,"about_ca_system_score_codex":0.000011740381,"about_ca_system_score_gemma":0.000041744843,"threshold_uncertainty_score":0.52636665},"labels":[],"label_agreement":null},{"id":"W3108680975","doi":"","title":"CpG-Oligodeoxynucleotide Is a Potent Adjuvant with an Gal-Inhibitable Lectin Vaccine against Amoebic Liver Abscess in Gerbils.","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Biology; Lectin; CpG Oligodeoxynucleotide; Adjuvant; Microbiology; Liver abscess; Immunology; Virology; Nonalcoholic steatohepatitis; Abscess; Pathology; Medicine","score_opus":0.009184558846379962,"score_gpt":0.24049299194690504,"score_spread":0.23130843310052507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3108680975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880912,0.00021599389,0.00032198927,0.00011617901,0.00011029773,0.00043267958,0.000005364301,0.000119193144,0.010587139],"genre_scores_gemma":[0.9978321,0.00025697192,0.00015743506,0.0003456827,0.00007847289,0.00005437643,0.000057026624,0.00002984618,0.0011880877],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99885243,0.00009717821,0.0002946323,0.00028989746,0.00015422635,0.00031163622],"domain_scores_gemma":[0.99927366,0.000029984503,0.00010250267,0.0003383128,0.0001413133,0.0001142171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020773255,0.00023852481,0.00033765024,0.00030284104,0.00032352426,0.000054099215,0.000033019805,0.000115556875,0.00023299005],"category_scores_gemma":[0.000018864099,0.00018636408,0.00006511757,0.00046207372,0.000055971836,0.00033549077,0.000036466427,0.00034135368,0.000036403486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000525735,0.0025017636,0.9810943,0.00009205698,0.00010845312,0.00012926385,0.00032759036,0.00015024214,0.0020225504,0.000117672884,0.0006898397,0.012240523],"study_design_scores_gemma":[0.004358076,0.001020733,0.98677665,0.00016107144,0.00010287272,0.00033112976,0.00009532075,0.000964201,0.0038536864,0.00011570094,0.0019940608,0.00022648755],"about_ca_topic_score_codex":0.03782119,"about_ca_topic_score_gemma":0.007596592,"teacher_disagreement_score":0.030224597,"about_ca_system_score_codex":0.0002023668,"about_ca_system_score_gemma":0.00007066709,"threshold_uncertainty_score":0.968586},"labels":[],"label_agreement":null},{"id":"W3113465351","doi":"10.1128/iai.00583-20","title":"Slipped-Strand Mispairing in the Gene Encoding Sialidase NanH3 in <i>Gardnerella</i> spp.","year":2020,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Sialidase; Microbiology; Gardnerella vaginalis; Biofilm; Gene; Haemophilus; Bacteria; Enzyme; Genetics; Biochemistry","score_opus":0.04564940010821976,"score_gpt":0.29084149458769887,"score_spread":0.2451920944794791,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3113465351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99393696,0.0006989635,0.00008012355,0.0009322132,0.00022270362,0.0003090986,0.000003666595,0.000044399105,0.003771888],"genre_scores_gemma":[0.9990696,0.0004800934,0.000007155311,0.00026937143,0.000044044304,0.000027334538,0.000015047564,0.0000086372465,0.00007872696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984346,0.0007759507,0.00024834895,0.0002437866,0.000041634477,0.0002556556],"domain_scores_gemma":[0.99943155,0.0002287513,0.000048208192,0.00022366237,0.000046366455,0.000021484013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008899878,0.00012853212,0.00017742222,0.00015389755,0.00025035988,0.000046090743,0.00011910283,0.00013380156,0.00019592007],"category_scores_gemma":[0.0005335433,0.0001026606,0.00005059506,0.00048169456,0.00014939037,0.00017786388,0.00006905239,0.0009557847,0.0001442524],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018059832,0.00033890994,0.21116538,0.000045928435,0.000038149097,0.000013913204,0.0034912638,0.00012940262,0.7764575,0.000114922484,0.0003960114,0.00762802],"study_design_scores_gemma":[0.0030009663,0.00043940928,0.6902841,0.000051531104,0.000018233193,0.00030106225,0.0011864342,0.000056587836,0.258311,0.00012902047,0.04591691,0.0003047741],"about_ca_topic_score_codex":0.0030761752,"about_ca_topic_score_gemma":0.00039804203,"teacher_disagreement_score":0.5181465,"about_ca_system_score_codex":0.000045343644,"about_ca_system_score_gemma":0.00003949833,"threshold_uncertainty_score":0.46502772},"labels":[],"label_agreement":null},{"id":"W3122391308","doi":"10.1128/iai.00810-20","title":"A SNP in the Cache 1 Signaling Domain of Diguanylate Cyclase STM1987 Leads to Increased <i>In Vivo</i> Fitness of Invasive <i>Salmonella</i> Strains","year":2021,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Salmonella; Single-nucleotide polymorphism; SNP; Microbiology; In vivo; Virology; Bloodstream infection; Genotype; Genetics; Bacteria; Gene","score_opus":0.03369630227701088,"score_gpt":0.25986597911134246,"score_spread":0.2261696768343316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122391308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99845713,0.0001363383,0.0000072591197,0.0003680994,0.000047517475,0.00015896455,0.00003395148,0.0000088459155,0.0007819144],"genre_scores_gemma":[0.9991744,0.00016508838,0.000019115658,0.00057087705,0.000024727033,0.000012753105,0.000020079313,8.759216e-7,0.00001209549],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982958,0.0009043669,0.00035817715,0.00016941948,0.00009176142,0.0001804875],"domain_scores_gemma":[0.9989087,0.00077106257,0.00011658341,0.00008908958,0.00006773787,0.000046850542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009009002,0.00011232886,0.00028158753,0.000029350043,0.0000749134,0.0000139887425,0.00011911859,0.0001034839,0.00009278428],"category_scores_gemma":[0.00029362977,0.00004935549,0.00007089535,0.00062117516,0.00009032744,0.00006591623,0.00006853939,0.00020170312,0.0000013792884],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037004123,0.00016383055,0.26872408,0.000014895567,0.0000056920267,0.000006569222,0.0005710248,0.000051504572,0.7289981,0.00008254918,0.000021844275,0.0013228845],"study_design_scores_gemma":[0.00032567143,0.00021947733,0.8596682,0.00006727688,0.0000084160765,0.000021787828,0.0017234337,0.000008671445,0.13675961,0.00074142456,0.00034324985,0.000112782494],"about_ca_topic_score_codex":0.008461026,"about_ca_topic_score_gemma":0.011867228,"teacher_disagreement_score":0.59223855,"about_ca_system_score_codex":0.000017135857,"about_ca_system_score_gemma":0.000021225089,"threshold_uncertainty_score":0.9981417},"labels":[],"label_agreement":null},{"id":"W3127939817","doi":"10.1128/iai.00035-21","title":"Evaluating the Role of STAT3 in CD4 <sup>+</sup> T Cells in Susceptibility to Invasive Aspergillosis","year":2021,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Public Health Ontario; University of Toronto; University Health Network","funders":"University Health Network","keywords":"Aspergillus fumigatus; Biology; Bronchoalveolar lavage; Aspergillosis; Immune system; Immunology; Immunosuppression; Cytokine; Interferon gamma; Tumor necrosis factor alpha; Context (archaeology); Lung; Microbiology; Internal medicine; Medicine","score_opus":0.03479875828311784,"score_gpt":0.33560445057828436,"score_spread":0.3008056922951665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127939817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972184,0.0002384872,0.000016541328,0.00016892952,0.000035814133,0.00034642158,0.000008407455,0.00001153217,0.0019555178],"genre_scores_gemma":[0.99924004,0.0002339404,0.00011876155,0.00022023532,0.000015415306,0.000014215764,0.000009394571,0.0000069010193,0.00014111884],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985293,0.0005070653,0.00036852717,0.00022529156,0.00019297571,0.000176798],"domain_scores_gemma":[0.9988849,0.0003524821,0.000057527694,0.00041073246,0.00023015843,0.00006415827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013089374,0.00010703462,0.00027805867,0.00009489895,0.000089071844,0.000014547285,0.000046110246,0.000078945915,0.00023456945],"category_scores_gemma":[0.001585335,0.000084661675,0.00006992169,0.0005550373,0.00009809446,0.00008930126,0.00009080781,0.00037368803,0.000009367194],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020724139,0.00029949017,0.80519754,0.00008361046,0.0000127568765,0.000002994659,0.002343248,0.00027144613,0.18212587,0.0000390984,0.000009183238,0.009407535],"study_design_scores_gemma":[0.00064462965,0.00035004833,0.89851344,0.00013549188,0.000018540963,0.0000039069705,0.0043438375,0.0007896198,0.09461273,0.00036061957,0.00015222278,0.00007490251],"about_ca_topic_score_codex":0.0053973724,"about_ca_topic_score_gemma":0.010660422,"teacher_disagreement_score":0.09331592,"about_ca_system_score_codex":0.00013647483,"about_ca_system_score_gemma":0.00022464496,"threshold_uncertainty_score":0.8159249},"labels":[],"label_agreement":null},{"id":"W3153744650","doi":"10.1128/iai.00009-21","title":"Leishmania donovani Metacyclic Promastigotes Impair Phagosome Properties in Inflammatory Monocytes","year":2021,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada","keywords":"Leishmania donovani; Biology; Microbiology; Phagosome; Lipophosphoglycan; Leishmania; NADPH oxidase; Leishmania major; Vacuole; Leishmania mexicana; Immunology; Phagocytosis; Leishmaniasis; Visceral leishmaniasis; Parasite hosting; Cell biology; Reactive oxygen species","score_opus":0.04379217729205587,"score_gpt":0.2952614510315734,"score_spread":0.25146927373951755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3153744650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99294174,0.0035090588,0.000008753069,0.0007221788,0.00010161664,0.00037514715,0.0000013592902,0.00012100542,0.0022191156],"genre_scores_gemma":[0.99684423,0.0020949796,0.00009168545,0.000114812225,0.000065391905,0.00008430695,0.000007951876,0.000019160298,0.0006775093],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99873966,0.0002337625,0.00030826847,0.00023344743,0.00020366146,0.00028117234],"domain_scores_gemma":[0.9992193,0.000078714205,0.000058478236,0.00029659533,0.0002467962,0.00010012186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037542672,0.00017423726,0.00034983206,0.0002235192,0.00021518747,0.000085875356,0.00004674463,0.00008165446,0.000097977274],"category_scores_gemma":[0.0008317784,0.00014366128,0.00007590033,0.00036114443,0.00017977247,0.00035149118,0.00019052926,0.00047817713,0.000031062376],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015565004,0.0007001328,0.8217658,0.0004490064,0.00021797144,0.00008503806,0.001094971,0.0000054681027,0.16552024,0.00019141867,0.00017945674,0.009634859],"study_design_scores_gemma":[0.0013145722,0.00031266152,0.91790473,0.00017105349,0.000032625863,0.00017161753,0.0004701872,0.00012723239,0.073910035,0.000120905584,0.0053159664,0.00014842463],"about_ca_topic_score_codex":0.0009081683,"about_ca_topic_score_gemma":0.00044512024,"teacher_disagreement_score":0.096138924,"about_ca_system_score_codex":0.00011975763,"about_ca_system_score_gemma":0.0001574562,"threshold_uncertainty_score":0.5858337},"labels":[],"label_agreement":null},{"id":"W3198888530","doi":"10.1128/iai.00225-21","title":"Small Intestinal Levels of the Branched Short-Chain Fatty Acid Isovalerate Are Elevated during Infection with Heligmosomoides polygyrus and Can Promote Helminth Fecundity","year":2021,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Victoria","funders":"Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Heligmosomoides polygyrus; Fecundity; Helminths; Isovalerate; Helminthiasis; Anthelmintic; Immunology; Microbiology; Zoology; Biochemistry; Environmental health","score_opus":0.029797855159458687,"score_gpt":0.2592922199281136,"score_spread":0.2294943647686549,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198888530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983087,0.0004019065,0.00030795444,0.00016124752,0.0003589291,0.00020004461,0.000056327033,0.000057518937,0.00014738287],"genre_scores_gemma":[0.9993312,0.0001999516,0.000034415512,0.00004794751,0.000018406623,0.000015690033,0.000028361947,0.000011796742,0.00031226507],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989188,0.00038687553,0.0002418876,0.00021845254,0.00003080692,0.0002031878],"domain_scores_gemma":[0.9992614,0.00007046367,0.00016629406,0.00024462934,0.00022867702,0.000028567549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001734817,0.00018331083,0.00024659856,0.00006939072,0.0006557828,0.000042032403,0.000049941875,0.00014135597,0.00011481365],"category_scores_gemma":[0.00018913587,0.0001389393,0.00006353154,0.00026468773,0.00024377211,0.00011593356,0.0001134018,0.00055190927,0.000004413856],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000105713276,0.0001146425,0.33505604,0.000047401125,0.0001218425,0.0000024754438,0.00030620585,0.000007666726,0.6627297,0.000025872258,0.0000033173594,0.0014791582],"study_design_scores_gemma":[0.00039257144,0.000117846925,0.54386467,0.00012587667,0.000039081955,0.0007377675,0.000089152985,0.0000072796947,0.45439273,0.000027745215,0.00011396556,0.00009131576],"about_ca_topic_score_codex":0.0030081868,"about_ca_topic_score_gemma":0.008139003,"teacher_disagreement_score":0.20880865,"about_ca_system_score_codex":0.000047965616,"about_ca_system_score_gemma":0.00006130057,"threshold_uncertainty_score":0.56657803},"labels":[],"label_agreement":null},{"id":"W4210888407","doi":"10.1128/iai.00183-21","title":"VAMP3 and VAMP8 Regulate the Development and Functionality of Parasitophorous Vacuoles Housing Leishmania amazonensis","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Government of Canada; Armand-Frappier Foundation","keywords":"Vacuole; Phagosome; Biogenesis; Endocytic cycle; Receptor; Leishmania; Amastigote","score_opus":0.04057799609617058,"score_gpt":0.29576824426151666,"score_spread":0.2551902481653461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210888407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99709123,0.0010331614,0.000039808554,0.0005771004,0.00008703449,0.00023168893,0.000003660728,0.000029440864,0.0009068466],"genre_scores_gemma":[0.9988258,0.0007107253,0.00013177603,0.0000981118,0.000024270057,0.000029449871,0.00000657586,0.000008385756,0.00016494039],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999027,0.00023401505,0.00021097925,0.00015204372,0.00024265675,0.00013330053],"domain_scores_gemma":[0.9994049,0.00018412026,0.00008196794,0.00017087552,0.000106293715,0.000051846037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007309139,0.00010157122,0.00020361999,0.00008824998,0.0010827092,0.000027675438,0.00002898805,0.000028041233,0.000046262616],"category_scores_gemma":[0.00014591335,0.000076918666,0.000027305656,0.00017215867,0.00023353631,0.00006779766,0.000300267,0.0002924972,5.13654e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031463633,0.0002148281,0.92869884,0.00020080342,0.0003051625,0.0000046357827,0.0032768191,0.0000122893325,0.005307582,0.00031183043,0.00046294506,0.060889624],"study_design_scores_gemma":[0.00059972354,0.00019717996,0.9798127,0.000022995193,0.000042868774,0.00009922232,0.0011680631,0.00003711416,0.0016041973,0.00015209503,0.016189575,0.000074283984],"about_ca_topic_score_codex":0.001209128,"about_ca_topic_score_gemma":0.0002824354,"teacher_disagreement_score":0.060815338,"about_ca_system_score_codex":0.000079837446,"about_ca_system_score_gemma":0.00007297333,"threshold_uncertainty_score":0.8327433},"labels":[],"label_agreement":null},{"id":"W4220976926","doi":"10.1128/iai.00565-21","title":"Characterization of the Phase-Variable Autotransporter Lav Reveals a Role in Host Cell Adherence and Biofilm Formation in Nontypeable Haemophilus influenzae","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Health and Medical Research Council; National Institute on Deafness and Other Communication Disorders; Australian Research Council; National Institutes of Health; Medical Research Council; Children's Health Foundation","keywords":"Haemophilus influenzae; Biology; Phase variation; Microbiology; Haemophilus; Pasteurellaceae; Gene; Biofilm; Locus (genetics); Phenotype; Bacteria; Genetics","score_opus":0.012792605705485537,"score_gpt":0.23452333661375144,"score_spread":0.2217307309082659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220976926","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988947,0.00013954191,0.000027163409,0.00003844557,0.00031373824,0.00026150222,0.000055191013,0.00001554288,0.0002541557],"genre_scores_gemma":[0.99950033,0.00013749705,0.0000040942346,0.00005008393,0.000005642235,0.00004630605,0.000090165006,0.0000047958442,0.0001611058],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992496,0.0002578949,0.00026929576,0.00009683248,0.000013480218,0.000112909554],"domain_scores_gemma":[0.9996767,0.000023117975,0.00013758031,0.00012632414,0.000028975393,0.000007282381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002743818,0.0000813574,0.00014769759,0.00013718828,0.0002450092,0.000012518746,0.00004881593,0.000081501224,0.00034559422],"category_scores_gemma":[0.000012777176,0.000070510876,0.000020650232,0.00029045765,0.000040481034,0.0002515269,0.00006686904,0.0002710802,0.000002849559],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008648667,0.00021182086,0.091910504,0.00003100582,0.000005532845,8.292067e-8,0.0006225203,0.000010588216,0.90648675,0.00008214594,0.000008280176,0.000544309],"study_design_scores_gemma":[0.002328018,0.0002758127,0.85258216,0.000037914444,0.000012985691,0.00004055454,0.00011634502,0.00007094573,0.1386899,0.0001169954,0.0056237304,0.000104647115],"about_ca_topic_score_codex":0.003877923,"about_ca_topic_score_gemma":0.00038187622,"teacher_disagreement_score":0.7677968,"about_ca_system_score_codex":0.000033440887,"about_ca_system_score_gemma":0.000019171943,"threshold_uncertainty_score":0.58622855},"labels":[],"label_agreement":null},{"id":"W4221026495","doi":"10.1128/iai.00522-21","title":"Surveying the Epigenetic Landscape of Tuberculosis in Alveolar Macrophages","year":2022,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Institute of Infection and Immunity; University of Ottawa","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; National Sanitarium Association; Canadian Institutes of Health Research; Government of Ontario; University of Ottawa","keywords":"Biology; Tuberculosis; Epigenetics; Immunology; Pathology; Genetics; Medicine","score_opus":0.042093489262097335,"score_gpt":0.31747362210211627,"score_spread":0.27538013284001894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221026495","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011280353,0.9873963,0.0000054326306,0.000014702128,0.0004523675,0.00034838554,0.00004497608,0.000018384197,0.00043908457],"genre_scores_gemma":[0.018712748,0.98049575,0.0000011576116,0.000010063696,0.0000071293084,0.00008665008,0.00018135978,0.000017238144,0.0004879098],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966721,0.0025029632,0.00045839045,0.00016041489,0.000027018827,0.00017910347],"domain_scores_gemma":[0.9984038,0.0009798026,0.0002364623,0.00034526642,0.000027301483,0.000007394503],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010567222,0.00019908726,0.0006648612,0.00029252627,0.00042363294,0.000016235499,0.0001742596,0.00022272483,0.0020660171],"category_scores_gemma":[0.00022779647,0.00014058367,0.0002414606,0.00034482704,0.000084442596,0.000042214047,0.00022621082,0.0008566306,0.000032121665],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001734167,0.00012942102,0.0013598405,0.0011334725,0.00026194705,9.090464e-7,0.00025912785,0.0000019226934,0.000057189405,0.000054070533,0.00011165925,0.9966131],"study_design_scores_gemma":[0.00028432492,0.00008933065,0.024664087,0.00040487625,0.00020677396,0.00010223442,0.00009767658,7.7486226e-7,0.000037044047,0.00001093474,0.9739548,0.00014712421],"about_ca_topic_score_codex":0.0024219428,"about_ca_topic_score_gemma":0.00017204985,"teacher_disagreement_score":0.996466,"about_ca_system_score_codex":0.000044152293,"about_ca_system_score_gemma":0.00009400515,"threshold_uncertainty_score":0.99884623},"labels":[],"label_agreement":null},{"id":"W4235598461","doi":"10.1128/iai.00623-09","title":"Mechanistic Science","year":2009,"lang":"en","type":"editorial","venue":"Infection and Immunity","topic":"Philosophy and History of Science","field":"Arts and Humanities","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Computational biology","score_opus":0.024605570533915874,"score_gpt":0.24932420690818113,"score_spread":0.22471863637426526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4235598461","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008628507,0.00013585162,0.000009405078,0.00003746094,0.7511672,0.0000635021,0.000025220032,0.00009133633,0.24760722],"genre_scores_gemma":[0.18551292,0.00035717385,0.000011643745,0.00014233708,0.8067561,0.0000074716504,0.000034572247,0.000012430456,0.0071653873],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99903095,0.000034264627,0.00014017004,0.00022732139,0.00039035478,0.00017695634],"domain_scores_gemma":[0.99925405,0.00007652236,0.000103679165,0.00020963067,0.00028081832,0.000075316435],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00054674054,0.00014619624,0.00016132052,0.00024481394,0.0023015249,0.00041040394,0.00020960269,0.000113771595,0.00040201595],"category_scores_gemma":[0.00033092053,0.00013567266,0.000042476062,0.00006847014,0.0016211309,0.00046387635,0.00006142541,0.00058493647,0.000085611115],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011007551,0.0000775645,6.887427e-7,0.00004008352,0.000006099995,0.0000013646876,0.003534402,2.4005297e-7,0.00022415092,0.13508669,0.8551217,0.0058960584],"study_design_scores_gemma":[0.0000845046,0.00020055962,0.000028939497,0.000037724712,0.000016405766,0.000001088055,0.000043766926,0.000007315102,0.000020536632,0.016768634,0.98262066,0.00016987282],"about_ca_topic_score_codex":0.0017507473,"about_ca_topic_score_gemma":0.00055771257,"teacher_disagreement_score":0.24044183,"about_ca_system_score_codex":0.00010561418,"about_ca_system_score_gemma":0.00023135632,"threshold_uncertainty_score":0.99899733},"labels":[],"label_agreement":null},{"id":"W4238855426","doi":"10.1128/iai.00519-09","title":"Role of Nod1 in Mucosal Dendritic Cells during <i>Salmonella</i> Pathogenicity Island 1-Independent <i>Salmonella enterica</i> Serovar Typhimurium Infection","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Bundesministerium für Bildung und Forschung","keywords":"NOD1; Biology; Microbiology; Lamina propria; Salmonella; Salmonella enterica; NOD2; Intracellular parasite; Pathogen; Innate immune system; Immune system; CD11c; Immunology; Virology; Bacteria; Phenotype; Epithelium","score_opus":0.004745938384297343,"score_gpt":0.2068838698105929,"score_spread":0.20213793142629555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238855426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967336,0.0009419095,0.00009082627,0.000036757683,0.00042496985,0.00028118986,0.000009588922,0.000077334334,0.001403819],"genre_scores_gemma":[0.99834037,0.0012777162,0.00001011492,0.00005374896,0.000028735109,0.000008233267,0.00005286072,0.00001432245,0.00021388708],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824023,0.00053414574,0.0005632276,0.0002598492,0.000064052925,0.0003385073],"domain_scores_gemma":[0.99926907,0.00007506514,0.00022690874,0.00029820332,0.000101272366,0.000029467472],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045380945,0.00024147794,0.00036452516,0.00031465205,0.00024434674,0.000027287004,0.000092390386,0.00032810264,0.000117384654],"category_scores_gemma":[0.00005378207,0.00024832573,0.00012214687,0.00029148054,0.00010165829,0.0002965115,0.000076440316,0.0005460916,0.0000845542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004791218,0.00036748013,0.029420592,0.00004380857,0.000041786978,0.0000030822666,0.00055675337,0.00005009402,0.9653914,0.00003528648,0.00002719957,0.003583422],"study_design_scores_gemma":[0.0013018851,0.00025083058,0.4090326,0.00004249907,0.000026433449,0.00011868128,0.00007661874,0.0000296648,0.5881299,0.0001110964,0.0007124913,0.00016726438],"about_ca_topic_score_codex":0.0017604422,"about_ca_topic_score_gemma":0.0003103915,"teacher_disagreement_score":0.37961203,"about_ca_system_score_codex":0.000082066974,"about_ca_system_score_gemma":0.00003481361,"threshold_uncertainty_score":0.9999969},"labels":[],"label_agreement":null},{"id":"W4242807065","doi":"10.1128/iai.05331-11","title":"Live Lactobacillus rhamnosus Is Essential for the Inhibitory Effect on Tumor Necrosis Factor Alpha-Induced Interleukin-8 Expression","year":2011,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Lactobacillus rhamnosus; Biology; Tumor necrosis factor alpha; Microbiology; Inhibitory postsynaptic potential; Alpha (finance); Interleukin; Lactobacillus; Interleukin 6; Necrosis; Immunology; Bacteria; Cytokine; Endocrinology; Medicine","score_opus":0.036791600159904604,"score_gpt":0.24307499335463922,"score_spread":0.20628339319473463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4242807065","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983757,0.0000332974,0.000011631102,0.000077910314,0.00055848353,0.0003790546,0.00003676545,0.00004857789,0.00047854392],"genre_scores_gemma":[0.99948233,0.00003386253,0.0000050315757,0.0002336487,0.00011970777,0.000034943285,0.000011712531,0.0000014425651,0.00007734057],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993439,0.000101909056,0.00013546499,0.00017136267,0.00007921555,0.00016818091],"domain_scores_gemma":[0.9995212,0.00021425677,0.00008282366,0.00007655831,0.000048575002,0.00005661504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017315069,0.00014101928,0.00012395589,0.000013342136,0.000537596,0.00006514331,0.00010392025,0.00008905536,0.00029330465],"category_scores_gemma":[0.000053014373,0.000047520134,0.00011070569,0.000081518694,0.000056455865,0.000095692885,0.000083241815,0.00020683257,0.000017853128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003735987,0.00021715762,0.0055357134,0.0000140356415,0.000036525253,5.819743e-7,0.0010795206,8.271078e-8,0.92542976,0.000034117336,0.00028820633,0.06699067],"study_design_scores_gemma":[0.00042834313,0.00308894,0.30802122,0.000052965566,0.000023618475,0.000005021216,0.00013798448,0.000038965907,0.68430847,0.000100054596,0.003623457,0.0001709903],"about_ca_topic_score_codex":0.0014976807,"about_ca_topic_score_gemma":0.00015460099,"teacher_disagreement_score":0.3024855,"about_ca_system_score_codex":0.000032594522,"about_ca_system_score_gemma":0.0000060272173,"threshold_uncertainty_score":0.41348082},"labels":[],"label_agreement":null},{"id":"W4248032168","doi":"10.1128/iai.70.3.1279-1286.2002","title":"Cloned Shiga Toxin 2 B Subunit Induces Apoptosis in Ramos Burkitt's Lymphoma B Cells","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"H2020 European Research Council","keywords":"Shiga toxin; Biology; Pentamer; Apoptosis; Protein subunit; Molecular biology; Shigella dysenteriae; Cell biology; Biochemistry; Escherichia coli","score_opus":0.021549449297047236,"score_gpt":0.2591180498221444,"score_spread":0.23756860052509718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4248032168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99517083,0.00063118024,0.00002547425,0.00012524267,0.00011103524,0.00014938544,0.0000034335255,0.00001846632,0.003764965],"genre_scores_gemma":[0.99496293,0.0040922775,0.000042023843,0.00016453807,0.00006086303,0.000038507475,0.000010865665,0.000011054549,0.00061695045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914837,0.00020569187,0.00014996062,0.0001830517,0.00009187688,0.00022102467],"domain_scores_gemma":[0.9995835,0.000027718137,0.000042094,0.00022051782,0.00006394861,0.00006226754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023385539,0.00012729081,0.0001298091,0.000081543025,0.00018190415,0.00004228204,0.00008478528,0.00013606559,0.00006845365],"category_scores_gemma":[0.00015402763,0.0001246569,0.000043564934,0.00021887773,0.00011274054,0.0000107591,0.00017204508,0.00014941396,0.000016326598],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004199831,0.00029035928,0.020100782,0.000024717445,0.000046926518,9.5178063e-7,0.00023719422,0.00000643568,0.9634692,0.000015867734,0.0009833062,0.014782267],"study_design_scores_gemma":[0.00150905,0.00048254736,0.19191441,0.000022985849,0.0000115597795,0.000007409836,0.00024430273,0.00016399485,0.762721,0.000041483396,0.04257082,0.00031044622],"about_ca_topic_score_codex":0.0011948252,"about_ca_topic_score_gemma":0.00033641452,"teacher_disagreement_score":0.2007482,"about_ca_system_score_codex":0.0000263533,"about_ca_system_score_gemma":0.000016581256,"threshold_uncertainty_score":0.50833607},"labels":[],"label_agreement":null},{"id":"W4284887384","doi":"10.1128/iai.00153-22","title":"Tauroursodeoxycholic Acid Inhibits Clostridioides difficile Toxin-Induced Apoptosis","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"National Institute of General Medical Sciences","keywords":"Tauroursodeoxycholic acid; Ursodeoxycholic acid; Biology; Deoxycholic acid; Bile acid; Microbiology; Apoptosis; Clostridium difficile toxin A; Taurine; Toxin; Clostridium difficile toxin B; Antibiotics; Clostridium difficile; Pharmacology; Amino acid; Biochemistry; Unfolded protein response","score_opus":0.03646052315131956,"score_gpt":0.3012683002969532,"score_spread":0.26480777714563364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4284887384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99085385,0.00033900555,0.000014362842,0.0011015494,0.0003574365,0.00047313867,0.00003116729,0.00018530438,0.0066441866],"genre_scores_gemma":[0.9979303,0.00040841597,0.00001574078,0.00041901233,0.00017032392,0.00012757788,0.0000836537,0.000036302175,0.00080869574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980938,0.00027450023,0.00033486393,0.0003480484,0.00051618373,0.00043264803],"domain_scores_gemma":[0.9989647,0.00008294043,0.000093454284,0.00047577283,0.00013648065,0.00024664274],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00048756532,0.00023543391,0.0003492201,0.000358743,0.0010613016,0.00006813433,0.00010672589,0.000103511964,0.0012337686],"category_scores_gemma":[0.00023754987,0.00023673962,0.00016639777,0.00079895207,0.00008924516,0.00011601035,0.00039764846,0.0012020464,0.000059774222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040129435,0.0009978506,0.0071600396,0.00006970384,0.00010177449,0.0000101689375,0.0004097541,0.00000999346,0.9582654,0.0001286746,0.002090438,0.030354872],"study_design_scores_gemma":[0.0023308326,0.0016721492,0.024548713,0.000031873416,0.00008630253,0.00032587184,0.0006464537,0.0001527903,0.9429584,0.000035638957,0.026903637,0.00030729853],"about_ca_topic_score_codex":0.0015497732,"about_ca_topic_score_gemma":0.000024006078,"teacher_disagreement_score":0.030047573,"about_ca_system_score_codex":0.00033546213,"about_ca_system_score_gemma":0.00016629219,"threshold_uncertainty_score":0.99967927},"labels":[],"label_agreement":null},{"id":"W4289844153","doi":"10.1128/iai.00242-22","title":"Chronic Leptin Deficiency Improves Tolerance of Physiological Damage and Host-Pathogen Cooperation during Yersinia pseudotuberculosis Infection","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Government of Canada; National Institutes of Health; NOMIS Stiftung; Pioneer Fund","keywords":"Yersinia pseudotuberculosis; Biology; Pathogen; Microbiology; Host (biology); Yersinia; Yersinia Infections; Immunology; Virology; Virulence; Enterobacteriaceae; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.011144016581011622,"score_gpt":0.26008831876086164,"score_spread":0.24894430217985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289844153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99906886,0.00036034704,0.000054206248,0.000037116875,0.00009203219,0.00019933068,0.000024713907,0.000015658006,0.00014772145],"genre_scores_gemma":[0.99901164,0.00067474745,0.000021609645,0.000028312592,0.00005956822,0.000033887183,0.00009011046,0.000009019764,0.00007113165],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909085,0.00025620268,0.00016566008,0.0002322757,0.00009209883,0.00016289891],"domain_scores_gemma":[0.9996039,0.000013212129,0.00007558277,0.00018624136,0.00007840324,0.0000426528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024320491,0.000110855435,0.00012815247,0.00007454062,0.00048441876,0.000028624278,0.00005543215,0.00007754762,0.000056952158],"category_scores_gemma":[0.00007476685,0.00011379149,0.000042457952,0.00016958432,0.00012382177,0.00001985476,0.0002423443,0.00022344691,0.0000014562777],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007792085,0.00008232391,0.05047435,0.00005214911,0.000012493907,4.0730387e-7,0.00007757566,0.00014469457,0.9483107,0.000007047263,0.00002031883,0.00074004894],"study_design_scores_gemma":[0.00044983413,0.0009217881,0.7705061,0.000005919143,0.000009142096,0.00003590811,0.00003080448,0.000351829,0.22700351,0.0000026928421,0.0005704112,0.00011205374],"about_ca_topic_score_codex":0.000465502,"about_ca_topic_score_gemma":0.00008110043,"teacher_disagreement_score":0.72130716,"about_ca_system_score_codex":0.00005247854,"about_ca_system_score_gemma":0.00004897787,"threshold_uncertainty_score":0.46402824},"labels":[],"label_agreement":null},{"id":"W4293212717","doi":"10.1128/iai.00314-22","title":"Simulated Colonic Fluid Replicates the <i>In Vivo</i> Growth Capabilities of Citrobacter rodentium <i>cpxRA</i> Mutants and Uncovers Additive Effects of Cpx-Regulated Genes on Fitness","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Alberta","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Citrobacter rodentium; Biology; Citrobacter; Microbiology; Pathogen; Escherichia coli; Colonization; Mutant; Gastrointestinal tract; Enteropathogenic Escherichia coli; In vivo; Enterobacteriaceae; Gene; Genetics; Biochemistry","score_opus":0.005382271118387728,"score_gpt":0.23374552979901694,"score_spread":0.2283632586806292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293212717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99850845,0.00078735535,0.0000034578998,0.000052506846,0.00007933786,0.0003498312,0.00006029107,0.000007255081,0.00015154033],"genre_scores_gemma":[0.99827266,0.00146774,0.0000020989962,0.00007443801,0.000010839491,0.000053652788,0.000022557388,0.000009329998,0.00008668945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989169,0.00044692314,0.00018121403,0.00018831264,0.00012300491,0.00014362688],"domain_scores_gemma":[0.99929345,0.00022042793,0.000099017285,0.00023209822,0.00013097175,0.000024026305],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031943622,0.000116540665,0.00018275678,0.000057845198,0.00021147275,0.000009688558,0.00008438245,0.00005358956,0.000014425423],"category_scores_gemma":[0.00030183475,0.000093946925,0.00004650471,0.0002166138,0.0003138898,0.0000073324554,0.00027917125,0.0001625199,1.141345e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004283361,0.00020323925,0.044793367,0.00012713754,0.0001390315,0.0000010187813,0.00038411413,0.00039782393,0.9530332,0.00002906398,0.00016139435,0.00030224648],"study_design_scores_gemma":[0.0010109136,0.0011265231,0.14258362,0.00002845352,0.000023967237,0.0000058468086,0.00030638746,0.00018192174,0.8532585,0.000081144375,0.0012783566,0.00011436712],"about_ca_topic_score_codex":0.0014978916,"about_ca_topic_score_gemma":0.00018579622,"teacher_disagreement_score":0.09977473,"about_ca_system_score_codex":0.000026633134,"about_ca_system_score_gemma":0.000040878233,"threshold_uncertainty_score":0.38310444},"labels":[],"label_agreement":null},{"id":"W4294754588","doi":"10.1128/iai.00223-22","title":"Iron Acquisition Mechanisms and Their Role in the Virulence of Acinetobacter baumannii","year":2022,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Acinetobacter baumannii; Siderophore; Biofilm; Biology; Virulence; Microbiology; Heme; Bacteria; Biochemistry; Pseudomonas aeruginosa; Enzyme; Genetics","score_opus":0.01826239951463082,"score_gpt":0.2756171183945851,"score_spread":0.25735471887995426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294754588","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17649484,0.8223661,0.00013344888,0.0000058794717,0.000119552424,0.00034183098,0.000037370988,0.000005156485,0.0004958316],"genre_scores_gemma":[0.07307223,0.9266031,0.000016654261,0.00003637887,0.000028820434,0.000019211273,0.0001825556,0.0000113025535,0.000029776436],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99903625,0.00041510395,0.00022827537,0.00017531021,0.00005121594,0.000093838986],"domain_scores_gemma":[0.9994719,0.000038173646,0.00016938767,0.00029158365,0.000014184296,0.000014747225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003918443,0.00016370021,0.00030634724,0.0000543308,0.000101500664,0.000022665781,0.00011495413,0.0001558391,0.00005403027],"category_scores_gemma":[0.00002829499,0.000110478766,0.000079604004,0.000089721354,0.00007512027,0.0000059391105,0.00014323305,0.0002181372,7.6919423e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006459849,0.00021156849,0.00083190296,0.004024209,0.000103078455,0.0000014588807,0.00043316235,0.0000010678657,0.019072458,0.00036097504,0.000095181545,0.97480035],"study_design_scores_gemma":[0.00019449543,0.00034889858,0.008606562,0.0006323403,0.00007565556,0.00008648356,0.00028003423,0.0000028832883,0.0006124602,0.0002188405,0.9887032,0.00023813837],"about_ca_topic_score_codex":0.00012235755,"about_ca_topic_score_gemma":0.000036436708,"teacher_disagreement_score":0.988608,"about_ca_system_score_codex":0.000014788489,"about_ca_system_score_gemma":0.000027592792,"threshold_uncertainty_score":0.45051932},"labels":[],"label_agreement":null},{"id":"W4294919498","doi":"10.1128/iai.00099-22","title":"Staphylococcus lugdunensis Uses the Agr Regulatory System to Resist Killing by Host Innate Immune Effectors","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Staphylococcus lugdunensis; Biology; Virulence; Microbiology; Innate immune system; Virulence factor; Effector; Staphylococcus aureus; Staphylococcal infections; Virology; Immune system; Staphylococcus; Immunology; Gene; Genetics; Bacteria","score_opus":0.009372683791362807,"score_gpt":0.24416995534502792,"score_spread":0.23479727155366512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294919498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99486524,0.0014212345,0.00015458089,0.0006194538,0.0007498734,0.000929236,0.000074640964,0.0002250187,0.00096071046],"genre_scores_gemma":[0.9982245,0.00013094558,0.000023846604,0.0006150634,0.0000775667,0.00013116102,0.00003673755,0.000043374897,0.0007167863],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99796605,0.00060031057,0.00042523837,0.00030977488,0.0003565859,0.00034203715],"domain_scores_gemma":[0.99855417,0.00026955223,0.00019080058,0.000682196,0.00016207862,0.00014120707],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0009412979,0.0002529787,0.00041767722,0.00022168459,0.0016634411,0.00007178459,0.00015321048,0.00008158858,0.00009317953],"category_scores_gemma":[0.0002016987,0.00020577046,0.00015997204,0.0007379256,0.00019758234,0.00009100667,0.0002982058,0.0007202219,0.000023059829],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018880683,0.0004532718,0.092341796,0.0006976191,0.00043812807,0.000036393685,0.0019557287,0.0001937123,0.86683506,0.0005213761,0.029936459,0.0047023967],"study_design_scores_gemma":[0.001746806,0.0010467441,0.76301134,0.00034445865,0.00024580385,0.00010998874,0.0028829554,0.0001184209,0.0455928,0.000011078431,0.18434744,0.00054220343],"about_ca_topic_score_codex":0.0028906774,"about_ca_topic_score_gemma":0.000074361866,"teacher_disagreement_score":0.8212423,"about_ca_system_score_codex":0.0004427517,"about_ca_system_score_gemma":0.00007822426,"threshold_uncertainty_score":0.99963623},"labels":[],"label_agreement":null},{"id":"W4311283728","doi":"10.1128/iai.00505-22","title":"Distinct Molecular Features of NleG Type 3 Secreted Effectors Allow for Different Roles during Citrobacter rodentium Infection in Mice","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University; University of Toronto; McMaster University; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Government of Canada","keywords":"Citrobacter rodentium; Effector; Biology; Enteropathogenic Escherichia coli; Escherichia coli; Microbiology; Citrobacter; Enterobacteriaceae; Ubiquitin ligase; Ubiquitin; Pathogen; Genetics; Cell biology; Gene","score_opus":0.007255088761149836,"score_gpt":0.25924866426137566,"score_spread":0.25199357550022583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311283728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988776,0.00039931035,0.00013684854,0.000018039185,0.00014731011,0.0003161473,0.000011008454,0.000012049079,0.000081674705],"genre_scores_gemma":[0.9993082,0.00034691,0.000010505491,0.00001526096,0.00002701877,0.00012043611,0.000099775585,0.000012838035,0.000059037833],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99919504,0.00025609287,0.00013369168,0.00016712137,0.00009370399,0.00015436354],"domain_scores_gemma":[0.9996668,0.000027770164,0.000065578955,0.00013237895,0.000078097415,0.000029346964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018993494,0.000114627335,0.00014049985,0.000090541085,0.00020727995,0.000014859136,0.000053459567,0.000054358163,0.000008654723],"category_scores_gemma":[0.00020181702,0.00011158946,0.00007094338,0.00014663851,0.000047305668,0.0000057935104,0.00025206726,0.00019852263,1.4902507e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027466324,0.00009800725,0.19958769,0.00008283898,0.00006503062,4.530528e-7,0.00004841339,0.00008103429,0.79946387,0.0000059791805,0.000024562205,0.00026747998],"study_design_scores_gemma":[0.00053304684,0.00036158058,0.65246224,0.000008540878,0.000011552577,0.0000035717312,0.00001596141,0.00005066216,0.34615728,0.000014130778,0.00030276502,0.00007866572],"about_ca_topic_score_codex":0.00061496074,"about_ca_topic_score_gemma":0.0008714324,"teacher_disagreement_score":0.45330656,"about_ca_system_score_codex":0.000042249576,"about_ca_system_score_gemma":0.000019040603,"threshold_uncertainty_score":0.45504862},"labels":[],"label_agreement":null},{"id":"W4311935032","doi":"10.1128/iai.00518-22","title":"Omptin Proteases of Enterobacterales Show Conserved Regulation by the PhoPQ Two-Component System but Exhibit Divergent Protection from Antimicrobial Host Peptides and Complement","year":2022,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Francis Xavier University; Toronto Metropolitan University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; Proteases; Complement (music); Host (biology); Component (thermodynamics); Computational biology; Antimicrobial peptides; Antimicrobial; Bacterial protein; Microbiology; Genetics; Bacteria; Biochemistry; Gene; Enzyme; Mutant","score_opus":0.024915404868765013,"score_gpt":0.20368661424126355,"score_spread":0.17877120937249855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4311935032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983692,0.0000945682,0.000027596201,0.00032952594,0.00012482153,0.0006539346,0.0003429444,0.000033425764,0.000023958575],"genre_scores_gemma":[0.9995889,0.000036174355,0.000008869221,0.000041404914,0.000029561113,0.000050419756,0.00022334955,8.999899e-7,0.000020412584],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99910873,0.00033573149,0.00020549554,0.00014443565,0.00010663113,0.00009894545],"domain_scores_gemma":[0.9996728,0.000040713163,0.00016400742,0.00005288696,0.000040275685,0.000029337343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024237181,0.00009764508,0.00012133868,0.000012418052,0.0008118199,0.000058186124,0.00006352293,0.000023523138,0.00010279241],"category_scores_gemma":[0.0000069288803,0.00004432076,0.000042672535,0.00008457933,0.00007661308,0.000065806395,0.00018917996,0.00013112159,6.6463e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103803046,0.00016463376,0.024306566,0.000019513542,0.00002952143,1.2166873e-7,0.00011923769,0.000009254121,0.9719475,0.00004105876,0.000107828244,0.0031509693],"study_design_scores_gemma":[0.0006425368,0.0006054934,0.86310536,0.0000711976,0.00003273609,0.000015259388,0.00090879074,0.0008129222,0.1306015,0.00003123444,0.0030157804,0.00015722742],"about_ca_topic_score_codex":0.013944113,"about_ca_topic_score_gemma":0.0004619482,"teacher_disagreement_score":0.841346,"about_ca_system_score_codex":0.000048460053,"about_ca_system_score_gemma":0.0000035122498,"threshold_uncertainty_score":0.99262214},"labels":[],"label_agreement":null},{"id":"W4313546100","doi":"10.1128/iai.00423-22","title":"MRSA Isolates from Patients with Persistent Bacteremia Generate Nonstable Small Colony Variants <i>In Vitro</i> within Macrophages and Endothelial Cells during Prolonged Vancomycin Exposure","year":2023,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Congressionally Directed Medical Research Programs; Clinical and Translational Science Institute, University of California, Los Angeles; National Institutes of Health; Allergan; Genentech; Canadian Institutes of Health Research; Regeneron Pharmaceuticals; National Center for Advancing Translational Sciences; Infectious Diseases Society of America; National Institute of Allergy and Infectious Diseases; Pfizer; Government of Canada; U.S. Department of Defense","keywords":"Bacteremia; Biology; Microbiology; In vitro; Vancomycin; Bacteria; Antibiotics; Immunology; Virology; Staphylococcus aureus; Genetics","score_opus":0.008811365720432411,"score_gpt":0.20310060631878904,"score_spread":0.19428924059835662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313546100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99870527,0.00009705445,0.000019547684,0.00004160026,0.00022717688,0.0005640105,0.00012941635,0.000085592634,0.00013030854],"genre_scores_gemma":[0.998813,0.0002600479,0.00032606596,0.00007433432,0.0000430806,0.00002421743,0.00006950174,0.000027800117,0.00036198812],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989457,0.00013375953,0.0002594408,0.00028495715,0.00010052501,0.00027560303],"domain_scores_gemma":[0.9994024,0.00007010262,0.000122055535,0.00020729455,0.00009898875,0.00009916262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017436358,0.00020438067,0.00031539635,0.0001442668,0.00025306942,0.00006448653,0.000043027692,0.000117867916,0.000027460856],"category_scores_gemma":[0.000043291027,0.00017424951,0.000044476765,0.00027520314,0.00010695477,0.00013127527,0.0000747902,0.00035716614,0.000010840703],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001786111,0.00012429307,0.32309887,0.000085056665,0.000071659335,0.000021938156,0.0007375568,0.000039975188,0.67370963,5.44003e-7,0.000018960567,0.00030540928],"study_design_scores_gemma":[0.004534894,0.00035889898,0.7655579,0.0001740124,0.00006979805,0.0000065887702,0.00014870678,0.00016358505,0.228683,0.0000042845663,0.00011976249,0.00017857242],"about_ca_topic_score_codex":0.0016126712,"about_ca_topic_score_gemma":0.00067427143,"teacher_disagreement_score":0.44502664,"about_ca_system_score_codex":0.000083346145,"about_ca_system_score_gemma":0.000052988944,"threshold_uncertainty_score":0.7105689},"labels":[],"label_agreement":null},{"id":"W4366235958","doi":"10.1128/iai.00390-22","title":"<i>Gardnerella</i> Revisited: Species Heterogeneity, Virulence Factors, Mucosal Immune Responses, and Contributions to Bacterial Vaginosis","year":2023,"lang":"en","type":"review","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Manitoba; Public Health Agency of Canada","funders":"Max Rady College of Medicine, University of Manitoba; Canadian HIV Trials Network, Canadian Institutes of Health Research","keywords":"Bacterial vaginosis; Biology; Virulence; Microbiology; Gardnerella vaginalis; Immune system; Commensalism; Immunology; Bacteria","score_opus":0.08865370924144347,"score_gpt":0.3908078445441993,"score_spread":0.3021541353027558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366235958","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.110279016,0.88359237,0.0000647642,0.00007894902,0.0018152322,0.0015982947,0.0019770483,0.00034918336,0.00024516633],"genre_scores_gemma":[0.009268247,0.98725885,0.000006037966,0.000014509714,0.00015662261,0.000186033,0.0011410703,0.000065749104,0.0019028822],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9950774,0.0026146849,0.0008358481,0.00078595086,0.00009391565,0.00059225195],"domain_scores_gemma":[0.99715877,0.0011438265,0.00030625783,0.0009199825,0.00035796087,0.00011323497],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014329421,0.00061256724,0.0015788404,0.00090808247,0.00117567,0.00022028547,0.00026037006,0.0007390096,0.00033577858],"category_scores_gemma":[0.00244834,0.0005297608,0.00036218672,0.0009337934,0.00052542443,0.00022139246,0.000764328,0.0016057452,0.000895948],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096538535,0.0017695104,0.0136474855,0.0139204785,0.007570727,0.000044974127,0.0008581939,0.0000011264642,0.12694155,0.0016125608,0.011424986,0.82124305],"study_design_scores_gemma":[0.00039460263,0.00035210335,0.017701417,0.0014967918,0.0004054519,0.00038675088,0.000027165477,6.741433e-8,0.0029177996,0.000028496905,0.97577804,0.0005112906],"about_ca_topic_score_codex":0.0019821008,"about_ca_topic_score_gemma":0.00011594976,"teacher_disagreement_score":0.9643531,"about_ca_system_score_codex":0.00029156622,"about_ca_system_score_gemma":0.00024571898,"threshold_uncertainty_score":0.999882},"labels":[],"label_agreement":null},{"id":"W4378781647","doi":"10.1128/iai.00096-23","title":"TargeTron Inactivation of Chlamydia trachomatis <i>gseA</i> Results in a Lipopolysaccharide 3-Deoxy- <scp>d</scp> -Manno-Oct-2-Ulosonic Acid-Deficient Strain That Is Cytotoxic for Cells","year":2023,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Chlamydia trachomatis; Biology; Strain (injury); Microbiology; Chlamydiaceae; Cytotoxic T cell; Lipopolysaccharide; Molecular biology; In vitro; Immunology; Biochemistry","score_opus":0.03643634099800422,"score_gpt":0.2979678586140803,"score_spread":0.26153151761607607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378781647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960299,0.00030575547,0.00039948002,0.00015063086,0.0006765516,0.001074056,0.00039206134,0.00015829325,0.0008132812],"genre_scores_gemma":[0.9974301,0.0005785781,0.000034381832,0.00003664021,0.000033847617,0.00021079733,0.0002840596,0.000025773039,0.0013658253],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99780923,0.0004988831,0.00056817714,0.00048385162,0.0001070755,0.0005327946],"domain_scores_gemma":[0.9980235,0.0008921823,0.00030393948,0.0005178436,0.0002237081,0.000038801616],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001770429,0.00025314777,0.0003957304,0.00092845893,0.00040631124,0.000044118897,0.00016048455,0.00037036114,0.000055238153],"category_scores_gemma":[0.0013513962,0.00025349826,0.00014869554,0.000925613,0.0002702684,0.00041138055,0.00011143935,0.0007738719,0.00015141258],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013342964,0.0005007787,0.008654392,0.00011371017,0.0001176452,9.709944e-7,0.0023373857,0.00008985511,0.9790053,0.00019623751,0.002008401,0.0068418956],"study_design_scores_gemma":[0.0016366979,0.00037504444,0.2733492,0.00004809109,0.00002207259,0.000018146879,0.00088684174,0.00006930345,0.71776634,0.0003704768,0.0053621707,0.00009559873],"about_ca_topic_score_codex":0.002487862,"about_ca_topic_score_gemma":0.00025148247,"teacher_disagreement_score":0.2646948,"about_ca_system_score_codex":0.00020156083,"about_ca_system_score_gemma":0.000131237,"threshold_uncertainty_score":0.9999917},"labels":[],"label_agreement":null},{"id":"W4387077428","doi":"10.1128/iai.00201-23","title":"<i>Mycobacterium tuberculosis</i> infection drives differential responses in the bone marrow hematopoietic stem and progenitor cells","year":2023,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune responses and vaccinations","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada)","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; European Social Fund; National Heart, Lung, and Blood Institute; Georgia Clinical and Translational Science Alliance; Agencia Estatal de Investigación; National Cancer Institute; National Institutes of Health; Ministerio de Ciencia e Innovación; National Center for Research Resources; Alvin J. Siteman Cancer Center","keywords":"Biology; Haematopoiesis; Lymphopoiesis; Progenitor cell; Immunology; Stem cell; Mycobacterium tuberculosis; Bone marrow; Immune system; Myeloid; Hematopoietic stem cell; Cell biology; Tuberculosis; Medicine","score_opus":0.014044640594430082,"score_gpt":0.2516701574290983,"score_spread":0.23762551683466823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387077428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975825,0.0006602191,0.000023223633,0.0003893124,0.00076035544,0.00034282604,0.000015746482,0.00012117672,0.000104616636],"genre_scores_gemma":[0.9966309,0.002062336,0.0000014553832,0.00005379063,0.000025745796,0.00008119467,0.000044582986,0.000012030956,0.0010879338],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982412,0.0010404947,0.00025654916,0.00018055663,0.00003680456,0.00024438245],"domain_scores_gemma":[0.9992671,0.0003681826,0.00007783453,0.00022596569,0.00004487411,0.000016065258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005070284,0.00016270093,0.00019683692,0.00028440778,0.0005621887,0.00007744948,0.000057656714,0.00018168741,0.00007745213],"category_scores_gemma":[0.000061194856,0.00012409885,0.000067464265,0.00032183636,0.00012786104,0.00016048439,0.00010749159,0.00038752207,0.0000888713],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044222487,0.0002843021,0.08161147,0.000110376335,0.0000974116,0.0000047805124,0.0036654249,0.0000016826974,0.9034304,0.00031178733,0.0008956777,0.009144453],"study_design_scores_gemma":[0.001119795,0.00022972548,0.9253324,0.00004328571,0.00005038881,0.00027475477,0.00062076835,0.000015148632,0.057493124,0.00008003759,0.014560121,0.00018044916],"about_ca_topic_score_codex":0.0007166895,"about_ca_topic_score_gemma":0.00017752455,"teacher_disagreement_score":0.8459373,"about_ca_system_score_codex":0.000024736515,"about_ca_system_score_gemma":0.00002482575,"threshold_uncertainty_score":0.5060604},"labels":[],"label_agreement":null},{"id":"W4387392336","doi":"10.1128/iai.00322-23","title":"Turicibacterales protect mice from severe <i>Citrobacter rodentium</i> infection","year":2023,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; U.S. Department of Veterans Affairs; National Cancer Institute; National Science Foundation; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Vanderbilt University Medical Center; Vanderbilt University","keywords":"Citrobacter rodentium; Biology; Citrobacter; Microbiology; Enterobacteriaceae; Pathogen; Escherichia coli; Genetics","score_opus":0.012173615280039537,"score_gpt":0.2529702395741273,"score_spread":0.24079662429408774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387392336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99849623,0.0000890425,0.00020921635,0.000122006175,0.000352434,0.00019650585,0.000027567268,0.00008168732,0.0004252885],"genre_scores_gemma":[0.99698955,0.0012924653,0.00003366378,0.00028022227,0.00019049163,0.00002094083,0.00047950057,0.0000150097585,0.000698167],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99925786,0.00016130197,0.00014330298,0.00021084618,0.00004600572,0.000180708],"domain_scores_gemma":[0.9996182,0.000012938996,0.000061315564,0.00019757311,0.000055478795,0.000054519845],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019184283,0.0001242866,0.00010508905,0.00006927509,0.00024258494,0.000052743133,0.00004183929,0.00015994225,0.000047345264],"category_scores_gemma":[0.00004340778,0.000121144294,0.000060142418,0.00015768358,0.000038950686,0.000013022547,0.0000957169,0.00018518015,0.00008898845],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000416624,0.000041648807,0.08687722,0.00003261083,0.00003396453,5.4451533e-7,0.00007785217,0.000008880938,0.9077806,0.0000046577165,0.002437366,0.0026629798],"study_design_scores_gemma":[0.00042017302,0.00013543156,0.87235624,0.000021495844,0.000014665977,0.000023755201,0.000012694112,0.000021580034,0.057964444,0.00007764026,0.06878651,0.00016536594],"about_ca_topic_score_codex":0.004716931,"about_ca_topic_score_gemma":0.0010253683,"teacher_disagreement_score":0.84981614,"about_ca_system_score_codex":0.000017191347,"about_ca_system_score_gemma":0.00003121093,"threshold_uncertainty_score":0.713062},"labels":[],"label_agreement":null},{"id":"W4390673068","doi":"10.1128/iai.00342-23","title":"Proinflammatory CD14 <sup>high</sup> CD16 <sup>low</sup> monocytes/macrophages prevail in <i>Treponema phagedenis-</i> associated bovine digital dermatitis","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Cumming School of Medicine, University of Calgary; Faculty of Veterinary Medicine, University of Calgary; Government of Canada; Alberta Agriculture and Forestry; Ministry of Advanced Education, Government of Alberta; Ministry of Advanced Education; Natural Sciences and Engineering Research Council of Canada; Government of Alberta","keywords":"Proinflammatory cytokine; CD14; Microbiology; Immunology; Inflammation; Biology; CD16; Macrophage; Inflammasome; Treponema; Monocyte; Immune system","score_opus":0.00783148700301571,"score_gpt":0.24565877440923048,"score_spread":0.23782728740621478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390673068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98954445,0.0039301068,0.000054912445,0.0004945323,0.00022403285,0.0006079869,0.00009844228,0.00056495337,0.0044805566],"genre_scores_gemma":[0.9964966,0.00077231077,0.000014611615,0.00043257547,0.000115816336,0.00009424811,0.00028186344,0.00004914602,0.0017428054],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99796975,0.00032763503,0.0006205895,0.0003923138,0.00026037576,0.00042933522],"domain_scores_gemma":[0.998862,0.00031826633,0.00010959079,0.00037452148,0.00012235087,0.00021324414],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003433425,0.0003604312,0.00054802065,0.0003744166,0.00030524458,0.00026861017,0.000098772194,0.00030455136,0.00039101348],"category_scores_gemma":[0.00072938384,0.00033604342,0.00018481324,0.00051260856,0.00025119746,0.0008569723,0.00012956547,0.0008009774,0.00025285757],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000649838,0.003118881,0.89348775,0.0032946663,0.0011785444,0.003500328,0.004646647,0.00028614828,0.0011612279,0.00024250062,0.049559675,0.0388738],"study_design_scores_gemma":[0.0056868074,0.0005429139,0.94448507,0.0018997069,0.00043363357,0.0025197626,0.000556904,0.0168658,0.0039856215,0.0007811265,0.021430058,0.0008125884],"about_ca_topic_score_codex":0.00033053747,"about_ca_topic_score_gemma":0.00006342554,"teacher_disagreement_score":0.05099733,"about_ca_system_score_codex":0.00016846963,"about_ca_system_score_gemma":0.00020794508,"threshold_uncertainty_score":0.99990916},"labels":[],"label_agreement":null},{"id":"W4391403245","doi":"10.1128/iai.00395-23","title":"IL-33-binding HpARI family homologues with divergent effects in suppressing or enhancing type 2 immune responses","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"IL-33, ST2, and ILC Pathways","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Wellcome Trust; UK Research and Innovation; University of Dundee","keywords":"Heligmosomoides polygyrus; Biology; Immune system; In vivo; In vitro; Cell biology; Cytokine; Immunology; Genetics","score_opus":0.021650135732507507,"score_gpt":0.2644661816796552,"score_spread":0.24281604594714767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391403245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926519,0.0034241113,0.00030151702,0.000017848084,0.0020125946,0.00022742592,0.00012760072,0.00020688528,0.0010301461],"genre_scores_gemma":[0.99676377,0.0011556098,0.00004262144,0.00004631704,0.00003398788,0.000021169233,0.00010312414,0.00002231302,0.0018110619],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998462,0.0005856652,0.00027586485,0.00027870663,0.00003924489,0.00035848332],"domain_scores_gemma":[0.9991338,0.0004946935,0.000062284336,0.00022287546,0.000061283055,0.000025052012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051665475,0.0002289437,0.0003099355,0.00033151128,0.0005107392,0.00008301107,0.00008668342,0.00024262247,0.00007623761],"category_scores_gemma":[0.0002871377,0.0001710048,0.000050165563,0.00045782144,0.0001979171,0.00028300323,0.00012676067,0.0006591266,0.00017870474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010751968,0.00013471761,0.010412076,0.00027202247,0.00017332348,0.00006896157,0.003017534,0.0000059032845,0.977622,0.00014566226,0.00026856278,0.006804087],"study_design_scores_gemma":[0.0019581981,0.0019351327,0.27813148,0.0013804309,0.00012927687,0.00053487037,0.001081494,0.000028342703,0.6350205,0.0001275559,0.07908081,0.0005918685],"about_ca_topic_score_codex":0.0016859493,"about_ca_topic_score_gemma":0.0005753316,"teacher_disagreement_score":0.34260145,"about_ca_system_score_codex":0.00008923893,"about_ca_system_score_gemma":0.0001577741,"threshold_uncertainty_score":0.6973373},"labels":[],"label_agreement":null},{"id":"W4391965264","doi":"10.1128/iai.00344-23","title":"A pleiotropic role of sialidase in the pathogenicity of <i>Porphyromonas gingivalis</i>","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"NHLBI Division of Intramural Research; National Institute of Dental and Craniofacial Research; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Porphyromonas gingivalis; Biology; Virulence; Microbiology; Bacteroidaceae; Biofilm; Sialidase; Complementation; Inflammation; Phenotype; Immunology; Bacteria; Gene; Genetics; Neuraminidase","score_opus":0.015183523711697686,"score_gpt":0.2948130687111533,"score_spread":0.27962954499945564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391965264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969324,0.0014029229,0.000023902663,0.000035590114,0.00015133449,0.0000896185,0.000049375813,0.000013404908,0.0013014413],"genre_scores_gemma":[0.9996502,0.00018631946,0.000007232825,0.000023082253,0.000020698499,0.0000048330617,0.0000130129765,0.000003570777,0.00009106696],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99927074,0.00034573444,0.00016402082,0.000077727775,0.00005662929,0.000085155414],"domain_scores_gemma":[0.99968123,0.000101601545,0.000028874661,0.00014422125,0.00003220254,0.000011875386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040304894,0.00005376177,0.00011182844,0.000085090236,0.000055825178,0.00002509494,0.000074459604,0.00007193974,0.00020647506],"category_scores_gemma":[0.00005680014,0.00003896564,0.00005752115,0.00023104495,0.0001326971,0.00007628181,0.00004930003,0.00027492826,0.000015304313],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039139,0.00012749371,0.24629071,0.00013898347,0.000032889424,0.000015092288,0.0009941495,0.000002660336,0.743919,0.0021477733,0.00019616155,0.0060959165],"study_design_scores_gemma":[0.00025251447,0.00013653103,0.9346281,0.00006739227,0.000015179111,0.00009044929,0.00021451138,0.0000719418,0.053933475,0.0012229048,0.009302316,0.00006462587],"about_ca_topic_score_codex":0.005773363,"about_ca_topic_score_gemma":0.0006206461,"teacher_disagreement_score":0.6899856,"about_ca_system_score_codex":0.000009533421,"about_ca_system_score_gemma":0.000024463603,"threshold_uncertainty_score":0.87276363},"labels":[],"label_agreement":null},{"id":"W4392895544","doi":"10.1128/iai.00071-24","title":"Special Collection on the 28th Annual Midwest Microbial Pathogenesis Conference","year":2024,"lang":"en","type":"editorial","venue":"Infection and Immunity","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; York University","keywords":"Biology; Pathogenesis; Microbiology; Immunology","score_opus":0.03163743258785442,"score_gpt":0.29227819473130756,"score_spread":0.26064076214345316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392895544","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15869917,0.00021385569,0.000042174826,0.0001407856,0.83345985,0.00037260953,0.0009518888,0.000043768705,0.0060759056],"genre_scores_gemma":[0.0588719,0.0021967653,0.000013698424,0.00014807752,0.9323152,0.00007224962,0.0012710094,0.00006808437,0.0050430186],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99849504,0.00036891206,0.00027307429,0.00045092532,0.0002013934,0.00021062332],"domain_scores_gemma":[0.9989466,0.00010088029,0.00013720835,0.00049551384,0.0002651362,0.0000546329],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004275296,0.00033492257,0.0002322031,0.000081693615,0.0004394384,0.00016831035,0.00020048895,0.0008934408,0.000098416764],"category_scores_gemma":[0.00042033757,0.00026887303,0.0001510293,0.00014869221,0.00020075205,0.0000064088504,0.00036682218,0.00067967945,0.00005525438],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003407497,0.00006452375,0.000030562238,0.0000534856,0.00012329676,0.0000020400187,0.000116315816,0.000002940847,0.027163556,0.000038819653,0.9705495,0.0015141615],"study_design_scores_gemma":[0.00029777957,0.00060214486,0.00051888224,0.00005910892,0.00007527323,0.00001614636,0.000047136527,0.0000032311996,0.016310671,0.0000387353,0.9817316,0.00029932443],"about_ca_topic_score_codex":0.00038369515,"about_ca_topic_score_gemma":0.00070368854,"teacher_disagreement_score":0.099827275,"about_ca_system_score_codex":0.000084468316,"about_ca_system_score_gemma":0.00031987522,"threshold_uncertainty_score":0.99997634},"labels":[],"label_agreement":null},{"id":"W4399573014","doi":"10.1128/iai.00211-24","title":"Investigating the importance of selected surface-exposed loops in HpuB for hemoglobin binding and utilization by <i>Neisseria gonorrhoeae</i>","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Neisseria gonorrhoeae; Biology; Mutant; Microbiology; Hemoglobin; Neisseria; Immunity; Phenotype; Bacterial outer membrane; Genetics; Computational biology; Gene; Immune system; Bacteria; Escherichia coli; Biochemistry","score_opus":0.04054137611788027,"score_gpt":0.31411398057716505,"score_spread":0.2735726044592848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399573014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949634,0.003601694,0.0002648047,0.00018050824,0.00025255504,0.00048212084,0.000027762128,0.000065717686,0.00016142953],"genre_scores_gemma":[0.99897504,0.0005563647,0.000027652724,0.000017933131,0.000009162408,0.000035219895,0.00011227823,0.000012797521,0.00025352585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900043,0.00031206323,0.00026812358,0.00022221066,0.000015237529,0.00018192513],"domain_scores_gemma":[0.9992181,0.00039557385,0.00007299653,0.000165963,0.00013336875,0.00001397187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000878166,0.00011171221,0.00015388394,0.00013022037,0.0002888338,0.00004989342,0.000052674906,0.00012576873,0.00004033881],"category_scores_gemma":[0.0006343669,0.00009025539,0.000026677257,0.000776645,0.00026200878,0.00022226198,0.000046393478,0.00039198628,0.0000053105236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023559815,0.00005350141,0.21714698,0.0000896363,0.000048809125,4.1928928e-8,0.00046747774,0.000010519475,0.7777696,0.00021982341,0.00044008472,0.0037299357],"study_design_scores_gemma":[0.001151592,0.000391278,0.35510394,0.00014281736,0.000037847425,0.0001057398,0.00047750355,0.0006956727,0.6267301,0.00062576187,0.014306683,0.00023110707],"about_ca_topic_score_codex":0.0007233067,"about_ca_topic_score_gemma":0.00020883224,"teacher_disagreement_score":0.15103957,"about_ca_system_score_codex":0.00005282309,"about_ca_system_score_gemma":0.000073410825,"threshold_uncertainty_score":0.36805078},"labels":[],"label_agreement":null},{"id":"W4400060382","doi":"10.1128/iai.00011-24","title":"Role of cold shock proteins B and D in <i>Aeromonas salmonicida</i> subsp. <i>salmonicida</i> physiology and virulence in lumpfish ( <i>Cyclopterus lumpus</i> )","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Canada First Research Excellence Fund; Ocean Frontier Institute","keywords":"Virulence; Aeromonas salmonicida; Biology; Microbiology; Pathogen; Mutant; Gene; Bacteria; Genetics","score_opus":0.004758865491643295,"score_gpt":0.21184127892784954,"score_spread":0.20708241343620626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400060382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9830772,0.014924667,0.0000066401635,0.00008068941,0.00017199424,0.00047599385,0.000028948314,0.00006526121,0.0011685757],"genre_scores_gemma":[0.9963495,0.0030776875,0.000010638949,0.00014231428,0.000011493213,0.00004583355,0.000047543916,0.000015682474,0.00029929538],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99874157,0.00023934586,0.00034003146,0.0003668966,0.00002609886,0.00028603844],"domain_scores_gemma":[0.99959993,0.00007986049,0.000073602394,0.0001904783,0.000028175466,0.000027955335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028531262,0.00022713399,0.0003451448,0.00022059292,0.00011040034,0.000034513716,0.00008747774,0.0002509134,0.000045821653],"category_scores_gemma":[0.000025543957,0.00021311559,0.0000486593,0.00028566908,0.00033713505,0.00022367037,0.00021655676,0.0004916266,0.00001586864],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015204036,0.0002025181,0.03640789,0.00022195494,0.000068492365,0.000006646869,0.0008981741,0.000002916367,0.95768064,0.00063901383,0.00016877236,0.0035509367],"study_design_scores_gemma":[0.0026267064,0.000394076,0.6742078,0.0005108856,0.00010952969,0.00013249628,0.0006360659,0.00007943638,0.2717388,0.0007606134,0.048219636,0.0005839784],"about_ca_topic_score_codex":0.0027321747,"about_ca_topic_score_gemma":0.0016043206,"teacher_disagreement_score":0.6859419,"about_ca_system_score_codex":0.00004216196,"about_ca_system_score_gemma":0.000030127632,"threshold_uncertainty_score":0.8690602},"labels":[],"label_agreement":null},{"id":"W4400119852","doi":"10.1128/iai.00117-24","title":"Adherence and metal-ion acquisition gene expression increases during infection with <i>Treponema phagedenis</i> strains from bovine digital dermatitis","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Treponema; Biology; Virulence; Microbiology; Pathogenesis; Gene; Bacterial adhesin; Gene expression; Immunology; Genetics; Syphilis","score_opus":0.012694397536250408,"score_gpt":0.25728491832526423,"score_spread":0.24459052078901383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400119852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961106,0.0006739334,0.0013935369,0.000037882626,0.00019628719,0.00028201018,0.00009215759,0.00029852276,0.00091503974],"genre_scores_gemma":[0.9982397,0.0010078584,0.000120063356,0.000043633197,0.00012691235,0.000044808225,0.00024833373,0.000022939728,0.00014577703],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99914247,0.000085903834,0.00021140726,0.0002699803,0.00014361592,0.00014664115],"domain_scores_gemma":[0.99951166,0.000055038174,0.0000603115,0.00018360553,0.000063754575,0.00012565422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008922228,0.00020116633,0.00021231333,0.00017581227,0.00040019565,0.00024335476,0.000013604925,0.00010194916,0.00020660598],"category_scores_gemma":[0.000034700304,0.0001581869,0.00005671608,0.00022709041,0.00008988333,0.0008766962,0.000047336343,0.00024291579,0.000024078567],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004114951,0.0015029906,0.62118924,0.0005742686,0.0007887762,0.0002785374,0.00075659185,0.000012029652,0.26923335,0.000048262624,0.00014848277,0.105055965],"study_design_scores_gemma":[0.001815639,0.0008010758,0.8773267,0.00068041886,0.0002801415,0.00128723,0.000044838544,0.00015504427,0.1151959,0.00012369634,0.0020778745,0.00021140747],"about_ca_topic_score_codex":0.004983766,"about_ca_topic_score_gemma":0.00028588466,"teacher_disagreement_score":0.2561375,"about_ca_system_score_codex":0.000085768996,"about_ca_system_score_gemma":0.000038605565,"threshold_uncertainty_score":0.75339967},"labels":[],"label_agreement":null},{"id":"W4402364971","doi":"10.1128/iai.00325-24","title":"Eosinophils respond to, but are not essential for control of an acute <i>Salmonella enterica</i> serovar Typhimurium infection in mice","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Eosinophilic Esophagitis","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; University of Victoria","keywords":"Salmonella enterica; Salmonella; Biology; Salmonella infection; Microbiology; Eosinophil; Immunology; Pathogen; Bacteria","score_opus":0.0134315765219815,"score_gpt":0.2994096074367129,"score_spread":0.2859780309147314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402364971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99475527,0.00025446218,0.0023990364,0.00072294223,0.0006888118,0.0007724585,0.00008508329,0.00011607291,0.00020588202],"genre_scores_gemma":[0.9985167,0.0002495153,0.000115415336,0.0005483578,0.0002085114,0.000066003195,0.000043984015,0.000030365463,0.0002211968],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988637,0.00015528167,0.00036400245,0.0002736124,0.00013936583,0.0002040565],"domain_scores_gemma":[0.9992229,0.00015000807,0.00008741017,0.00024371914,0.00017567232,0.00012030624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004263653,0.00017291139,0.00035727574,0.00041482406,0.00008773983,0.000048122674,0.000044382825,0.00015290335,0.000033545828],"category_scores_gemma":[0.00015413204,0.00017230466,0.00011962343,0.00042285875,0.000075675205,0.00025205157,0.00003811269,0.00031026237,0.000012381424],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00280926,0.00063091464,0.029900672,0.0006253404,0.00026283375,0.000048305985,0.00071010395,0.000034035605,0.9575355,0.000117929725,0.00027213487,0.0070529794],"study_design_scores_gemma":[0.004619734,0.0030833245,0.70223534,0.0005820782,0.00043433558,0.0003781312,0.00006242851,0.0028618856,0.28195694,0.00022477587,0.0032623888,0.0002986355],"about_ca_topic_score_codex":0.002150509,"about_ca_topic_score_gemma":0.00024030558,"teacher_disagreement_score":0.67557853,"about_ca_system_score_codex":0.00009421664,"about_ca_system_score_gemma":0.000063224215,"threshold_uncertainty_score":0.70263803},"labels":[],"label_agreement":null},{"id":"W4402412060","doi":"10.1128/iai.00314-24","title":"Pathogenic diversification of the gut commensal <i>Providencia alcalifaciens</i> via acquisition of a second type III secretion system","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of General Medical Sciences; Genentech; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Washington State University","keywords":"Biology; Microbiology; Shigella flexneri; Type three secretion system; Shigella; Virulence; Secretion; Salmonella enterica; Vacuole; Effector; Cell biology; Salmonella; Gene; Genetics; Bacteria; Escherichia coli; Cytoplasm","score_opus":0.012497216221844009,"score_gpt":0.25495705242905187,"score_spread":0.24245983620720785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402412060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99825895,0.00043936164,0.000588964,0.000041801184,0.0002350268,0.00014618761,0.00003987054,0.000011220458,0.00023860864],"genre_scores_gemma":[0.9996231,0.0001874312,0.000009736387,0.0000176056,0.000031393534,0.000005621445,0.000060323335,0.000004319931,0.00006044955],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947345,0.00014894793,0.00013315088,0.00009945356,0.000077261124,0.00006773405],"domain_scores_gemma":[0.99959147,0.000014386062,0.00006086632,0.00017179621,0.00014467185,0.000016823145],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025319366,0.00005884733,0.00007767479,0.000033420027,0.00011073717,0.000013815999,0.00005062437,0.00006263262,0.000014916585],"category_scores_gemma":[0.000035540023,0.000045416222,0.000051836978,0.00013184482,0.00010088512,0.000009169829,0.00012500334,0.00007068123,0.00000188418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004945302,0.000017177064,0.0033272398,0.00018649,0.000046403096,1.1109022e-7,0.0001298521,0.0000013793206,0.99509495,0.000061790495,0.000188232,0.0008968929],"study_design_scores_gemma":[0.00043526327,0.0005233321,0.3385524,0.00014465945,0.000060955987,0.000032350476,0.00032254393,0.00059639453,0.65488064,0.000050281174,0.004279295,0.000121903446],"about_ca_topic_score_codex":0.0002058718,"about_ca_topic_score_gemma":0.000048862512,"teacher_disagreement_score":0.34021437,"about_ca_system_score_codex":0.0000243944,"about_ca_system_score_gemma":0.000034107023,"threshold_uncertainty_score":0.18520197},"labels":[],"label_agreement":null},{"id":"W4403646158","doi":"10.1128/iai.00309-24","title":"<i>Toxoplasma gondii</i> infection induces the expression of the chemokine CXCL16 in macrophages to promote chemoattraction of CXCR6 <sup>+</sup> cells","year":2024,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Institut National de la Recherche Scientifique","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Armand-Frappier Foundation","keywords":"CXCL16; Biology; Chemokine; Toxoplasma gondii; Immunology; Macrophage; Intracellular parasite; Immune system; Cytokine; CXCL10; Virology; Antibody; In vitro; Genetics","score_opus":0.014284500695905361,"score_gpt":0.2708547484045939,"score_spread":0.2565702477086885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403646158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969704,0.0007141396,0.000044139957,0.0004579726,0.00061894406,0.0005584387,0.000025693078,0.00005537642,0.0005548747],"genre_scores_gemma":[0.99836236,0.00077801105,0.000012341913,0.00003546527,0.000027952467,0.000058465543,0.000011804553,0.000014302124,0.00069927494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986083,0.00046873363,0.00037101342,0.0002257897,0.00008594661,0.00024021222],"domain_scores_gemma":[0.9991302,0.00029145463,0.00012513946,0.00032446516,0.00011002445,0.000018709212],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007458678,0.00018341112,0.00025978367,0.00024198776,0.00031191288,0.000029525767,0.00014633691,0.00021985118,0.00010397739],"category_scores_gemma":[0.0002832971,0.00011060105,0.00010594026,0.00070128957,0.00033575192,0.00020082119,0.00029669594,0.00083725137,0.000034602974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009819314,0.00016685927,0.0059850505,0.00017536749,0.000068375215,5.390332e-7,0.0023676632,0.00014019376,0.9819107,0.000032151846,0.0007536404,0.00830129],"study_design_scores_gemma":[0.0003935445,0.00019101832,0.07890469,0.00025387766,0.000024891846,0.0000308193,0.00025839487,0.00002645953,0.90454704,0.000064331274,0.01520804,0.000096916665],"about_ca_topic_score_codex":0.0018210043,"about_ca_topic_score_gemma":0.00018498718,"teacher_disagreement_score":0.07736366,"about_ca_system_score_codex":0.000073219075,"about_ca_system_score_gemma":0.00006308023,"threshold_uncertainty_score":0.451018},"labels":[],"label_agreement":null},{"id":"W4406688253","doi":"10.1128/iai.00439-24","title":"TSST-1 promotes colonization of <i>Staphylococcus aureus</i> within the vaginal tract by activation of CD8 <sup>+</sup> T cells","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"American Urological Association; Canadian Institutes of Health Research; Weston Family Foundation","keywords":"Toxic shock syndrome; Staphylococcus aureus; Superantigen; Biology; Microbiology; Staphylococcal infections; Vagina; Immunology; Bacteria; Genetics","score_opus":0.011694419926408661,"score_gpt":0.27237765611225484,"score_spread":0.26068323618584616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406688253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951897,0.00032464412,0.0019013629,0.00028879096,0.00021664664,0.00053736084,0.000025234745,0.000039479233,0.0014767572],"genre_scores_gemma":[0.99892485,0.00012538621,0.000014773916,0.000036018504,0.0000106690895,0.000034827182,0.00006132469,0.000007904962,0.0007842452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860704,0.0006449969,0.0003537258,0.00019322039,0.00005456391,0.00014648004],"domain_scores_gemma":[0.9986555,0.00034956314,0.00022812761,0.00035727504,0.00039885365,0.000010689553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079711044,0.00013192129,0.0002127478,0.00022243524,0.00036471823,0.000019036426,0.000117476404,0.00018263499,0.000105673134],"category_scores_gemma":[0.00044572513,0.00010245092,0.00005965523,0.00061571115,0.00048568266,0.00021509718,0.00006421625,0.00053566723,0.0000098361215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013118888,0.00065606233,0.028271312,0.00008022774,0.00015166118,5.2142703e-8,0.00072796835,0.00038202773,0.9650264,0.0006400345,0.0012502229,0.002682839],"study_design_scores_gemma":[0.00060098694,0.00031937234,0.055904005,0.000046031135,0.0000383088,0.0000049959235,0.0002645466,0.00007889321,0.9369918,0.00033247878,0.005338546,0.00007999852],"about_ca_topic_score_codex":0.0021052265,"about_ca_topic_score_gemma":0.000016760758,"teacher_disagreement_score":0.028034566,"about_ca_system_score_codex":0.000051340678,"about_ca_system_score_gemma":0.000121088684,"threshold_uncertainty_score":0.41778272},"labels":[],"label_agreement":null},{"id":"W4406927874","doi":"10.1128/iai.00405-24","title":"Proinflammatory synergy between protease and superantigen streptococcal pyogenic exotoxins","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Institute of Allergy and Infectious Diseases; Fondation Leducq; Children's Healthcare of Atlanta; Emory University; Burroughs Wellcome Fund","keywords":"Superantigen; Streptococcus pyogenes; Microbiology; Proteases; Toxic shock syndrome; Exotoxin; Biology; Protease; Virulence; Streptococcus; Immunology; Staphylococcus aureus; Immune system; Toxin; Bacteria; T cell; Enzyme; Biochemistry; Genetics","score_opus":0.017195463885856924,"score_gpt":0.297846540709908,"score_spread":0.2806510768240511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406927874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99403805,0.00019340283,0.00018243163,0.00014149012,0.000087944296,0.0010467794,0.0000071956047,0.00013424005,0.0041684816],"genre_scores_gemma":[0.9984776,0.00017215655,0.000046222067,0.00006881129,0.000050755938,0.00019914377,0.00002600102,0.0000102336935,0.0009490956],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99927205,0.000081247636,0.00021316901,0.00020444435,0.00006670386,0.00016240698],"domain_scores_gemma":[0.9994849,0.000051293016,0.000037810325,0.00023073531,0.00007397163,0.00012130633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012438817,0.00015483025,0.0002352849,0.00018926729,0.00033616868,0.000041252497,0.000020248328,0.000117665106,0.00009832509],"category_scores_gemma":[0.000076960525,0.00013253932,0.00006997312,0.00021728064,0.0001250366,0.00011400132,0.000061786806,0.00024429805,0.000012417684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004386346,0.00019424419,0.9658119,0.00009493413,0.00021515792,0.0000051583384,0.00004978803,3.8509188e-7,0.0048671192,0.0002708636,0.000060950333,0.028385649],"study_design_scores_gemma":[0.0016902973,0.000281777,0.98045886,0.0001123733,0.00016274663,0.00004152858,0.000037202328,0.00003632373,0.009824332,0.00020429124,0.007044249,0.00010599985],"about_ca_topic_score_codex":0.0011470994,"about_ca_topic_score_gemma":0.00005367798,"teacher_disagreement_score":0.02827965,"about_ca_system_score_codex":0.000060496885,"about_ca_system_score_gemma":0.00008735192,"threshold_uncertainty_score":0.5404797},"labels":[],"label_agreement":null},{"id":"W4406927901","doi":"10.1128/iai.00407-24","title":"Evidence that staphylococcal superantigens promote within-patient bacterial persistence following post-operative surgical site infection","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; University of Victoria; Western University","funders":"Canadian Institutes of Health Research","keywords":"Superantigen; Staphylococcus aureus; Microbiology; Bacteremia; Biology; Exotoxin; Plasmid; Enterotoxin; Staphylococcal infections; Virulence; Immunology; Antibiotics; Virology; Gene; Toxin; Bacteria; Genetics; Escherichia coli","score_opus":0.03159610358369877,"score_gpt":0.30090327117742927,"score_spread":0.2693071675937305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406927901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959267,0.0003069429,0.00046865223,0.00036342887,0.0009930779,0.00080971455,0.00001270789,0.00013271123,0.0009861123],"genre_scores_gemma":[0.9987288,0.00040696765,0.00017283503,0.00023439854,0.000065116896,0.000029596447,0.00003234288,0.000016074839,0.0003138405],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99843675,0.00030073646,0.00036801456,0.0003740697,0.00022928702,0.0002911535],"domain_scores_gemma":[0.9989542,0.00016027452,0.00013144867,0.00030978044,0.00032236363,0.000121969344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042138004,0.00026457035,0.0004124038,0.00022900882,0.00062276475,0.00013795911,0.00005097157,0.00018745933,0.00014598801],"category_scores_gemma":[0.00046082688,0.00023440745,0.00024771146,0.00044979877,0.00021452244,0.0004851135,0.00011687527,0.0005674635,0.000020442754],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020735855,0.00045590108,0.37215254,0.0002872355,0.00029500667,0.00010499464,0.0050361003,0.000016978223,0.609031,0.000082719314,0.0001393787,0.010324551],"study_design_scores_gemma":[0.002550803,0.0015616477,0.8398313,0.0023280112,0.0003015722,0.00019786348,0.000560913,0.0002095622,0.14099337,0.000021733253,0.010972142,0.00047110068],"about_ca_topic_score_codex":0.002308903,"about_ca_topic_score_gemma":0.00060745265,"teacher_disagreement_score":0.46803766,"about_ca_system_score_codex":0.00021013457,"about_ca_system_score_gemma":0.00022488048,"threshold_uncertainty_score":0.9558858},"labels":[],"label_agreement":null},{"id":"W4407239752","doi":"10.1128/iai.00002-25","title":"<i>Candida albicans</i> enhances iron uptake to maintain fluconazole resistance","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health; Concordia University","keywords":"Fluconazole; Ergosterol; Candida albicans; Microbiology; Strain (injury); Corpus albicans; Biology; Minimum inhibitory concentration; Pharmacology; Biochemistry; Antifungal; Antimicrobial","score_opus":0.008128572126103075,"score_gpt":0.28826788250698354,"score_spread":0.28013931038088047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407239752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95014226,0.00042337825,0.0020892075,0.0012753377,0.00019696285,0.00027258432,0.0000061914193,0.00007287608,0.045521174],"genre_scores_gemma":[0.9827052,0.0003420664,0.0001732522,0.0019273325,0.00003565203,0.000020392541,0.000009977484,0.0000060284306,0.01478015],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999193,0.00007441185,0.00021798367,0.00021359857,0.00011197747,0.00018901286],"domain_scores_gemma":[0.9993878,0.00006450897,0.000034833796,0.00031285302,0.00009837204,0.00010163602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034855088,0.00011944378,0.00021758628,0.00009798436,0.0002611747,0.000031239764,0.000045056066,0.00007614911,0.00020636304],"category_scores_gemma":[0.00023432741,0.00010783919,0.00006076676,0.0003285154,0.00010190963,0.0000846263,0.000043687895,0.00023726338,0.000028784209],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034452535,0.00081419473,0.62130576,0.0010271077,0.00017036659,0.000018573854,0.0009446661,0.0000056678246,0.2628813,0.015767075,0.020401921,0.07321811],"study_design_scores_gemma":[0.0005654549,0.00012239718,0.82745314,0.00017087617,0.000034525197,0.0000025110432,0.00024745584,0.0000067740225,0.013006132,0.00065214693,0.15763715,0.00010145341],"about_ca_topic_score_codex":0.00067474775,"about_ca_topic_score_gemma":0.0027913286,"teacher_disagreement_score":0.24987517,"about_ca_system_score_codex":0.00010054476,"about_ca_system_score_gemma":0.00009753533,"threshold_uncertainty_score":0.43975544},"labels":[],"label_agreement":null},{"id":"W4408343920","doi":"10.1128/iai.00072-25","title":"Polyphosphatases have a polyphosphate-independent influence on the virulence of <i>Cryptococcus neoformans</i>","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Cryptococcus neoformans; Virulence; Biology; Cryptococcosis; Microbiology; Immune system; Virulence factor; Cryptococcus; Pathogen; Immunology; Gene; Genetics","score_opus":0.012490023017136458,"score_gpt":0.28039251237292234,"score_spread":0.26790248935578587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408343920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9846546,0.0007908252,0.00012490049,0.00056502287,0.00020635372,0.00036547508,0.000012604816,0.000043265256,0.013236954],"genre_scores_gemma":[0.99688506,0.0011212671,0.000010593262,0.0013100541,0.000012761065,0.000045879362,0.0000034000393,0.0000044126127,0.0006065689],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993399,0.00005580738,0.00022565392,0.00011911212,0.00011787834,0.00014169764],"domain_scores_gemma":[0.9992715,0.00018971373,0.00007516082,0.0002892376,0.00013720675,0.00003716585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024331169,0.0001235235,0.00019371966,0.00010866766,0.00041876052,0.000022761771,0.00004928406,0.00005944596,0.0000670932],"category_scores_gemma":[0.00022654618,0.00008039821,0.00007146051,0.0002631214,0.00020183325,0.000096331416,0.00008106365,0.00029797055,0.0000124185035],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008576425,0.0011154898,0.90587693,0.00035605513,0.00045810576,0.000007076631,0.0008911346,0.00012114708,0.022072569,0.039981842,0.003308541,0.024953462],"study_design_scores_gemma":[0.0007038168,0.000520383,0.9139325,0.00029670764,0.000072536,0.000016693983,0.00030016602,0.00008475886,0.07082926,0.00036698146,0.012784579,0.00009159429],"about_ca_topic_score_codex":0.0046869023,"about_ca_topic_score_gemma":0.00012964183,"teacher_disagreement_score":0.04875669,"about_ca_system_score_codex":0.00004104863,"about_ca_system_score_gemma":0.000052057538,"threshold_uncertainty_score":0.70852256},"labels":[],"label_agreement":null},{"id":"W4409870398","doi":"10.1128/iai.00081-25","title":"Evidence for a model of conformational change by the <i>Plasmodium falciparum</i> circumsporozoite protein during sporozoite development in the mosquito host through the use of camelid single-domain antibodies","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Invertebrate Immune Response Mechanisms","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Universiteit Antwerpen; Fonds Wetenschappelijk Onderzoek; Agence Nationale de la Recherche","keywords":"Circumsporozoite protein; Epitope; Biology; Antibody; Midgut; Molecular biology; Algorithm; Immunology; Computer science","score_opus":0.11690653796778959,"score_gpt":0.28956255205638926,"score_spread":0.17265601408859965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409870398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929441,0.0015277528,0.0031895211,0.0006367985,0.00015691677,0.0014221249,0.00005246923,0.000016329719,0.000053955482],"genre_scores_gemma":[0.9985933,0.00022428462,0.00014274659,0.0004135428,0.0000043554573,0.00034030745,0.000039683677,0.0000072860025,0.00023455048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985802,0.0005011337,0.0004906232,0.00013332367,0.000066782435,0.00022790596],"domain_scores_gemma":[0.9986859,0.0005414531,0.00027362132,0.00033515354,0.0001588563,0.000005042901],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010127048,0.00016666375,0.00023928919,0.000094932264,0.0005818574,0.00003440369,0.0002519849,0.00013618781,0.000009121465],"category_scores_gemma":[0.00024982236,0.00009813485,0.000070767455,0.00023883929,0.000368274,0.00040908725,0.00014015348,0.00029453437,0.000002459242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006730616,0.00017593545,0.0010597907,0.00017632937,0.00010965134,1.396455e-7,0.015661856,0.00006327431,0.97677,0.004064855,0.00018684311,0.0010582549],"study_design_scores_gemma":[0.0014392589,0.00016300294,0.017800735,0.00058293843,0.00004314602,0.000028945427,0.0023249742,0.00040006475,0.9692697,0.00069051015,0.007076193,0.0001805304],"about_ca_topic_score_codex":0.0016495256,"about_ca_topic_score_gemma":0.00032921118,"teacher_disagreement_score":0.016740944,"about_ca_system_score_codex":0.000059324786,"about_ca_system_score_gemma":0.00011358579,"threshold_uncertainty_score":0.44752353},"labels":[],"label_agreement":null},{"id":"W4410779250","doi":"10.1128/iai.00194-25","title":"Ficolin-1 in pediatric <i>Plasmodium falciparum</i> malaria and its possible role in parasite clearance and anemia","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Malaria Research and Control","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Ficolin; Biology; Lectin pathway; Immunology; Malaria; Plasmodium falciparum; Complement system; Context (archaeology); Immune system; Alternative complement pathway; Internal medicine; Medicine","score_opus":0.009652296099148078,"score_gpt":0.28150614968867355,"score_spread":0.27185385358952546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410779250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909814,0.0031826133,0.000013191525,0.001168664,0.00005344555,0.0003755465,0.0000031360014,0.000021477083,0.004200519],"genre_scores_gemma":[0.99478513,0.00429997,0.000010886841,0.00022685311,0.000025830985,0.00003061414,0.000004267735,0.0000049929736,0.0006114432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99922884,0.00013221549,0.00017935071,0.00016946727,0.00007840374,0.00021174936],"domain_scores_gemma":[0.9996488,0.000082042854,0.000028249611,0.000108899294,0.000044562927,0.000087417284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039673565,0.00009932179,0.00020574259,0.00031603116,0.00009468924,0.000045795212,0.000027796219,0.00011713525,0.000024423323],"category_scores_gemma":[0.00018617025,0.00009491335,0.000017275781,0.00039513886,0.000035670106,0.00013307149,0.000060490176,0.00047635872,0.0000043459754],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008113683,0.00015728272,0.98800296,0.00025182043,0.000009895918,0.000011696782,0.00015503014,0.000007077309,0.00350504,0.0008925553,0.00006201578,0.0061332635],"study_design_scores_gemma":[0.003491166,0.00016789946,0.9927529,0.00006113804,0.000020115229,0.000021175094,0.00004252932,0.002092855,0.0005356131,0.00025060057,0.000488721,0.0000752992],"about_ca_topic_score_codex":0.0014153441,"about_ca_topic_score_gemma":0.0008347141,"teacher_disagreement_score":0.006057964,"about_ca_system_score_codex":0.00003176396,"about_ca_system_score_gemma":0.000077388526,"threshold_uncertainty_score":0.38704538},"labels":[],"label_agreement":null},{"id":"W4415309045","doi":"10.1128/iai.00268-25","title":"Bacteriophage Mu contamination impacts interbacterial competition","year":2025,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Bacteriophage; Contamination; Competition (biology); Mutant; Strain (injury); Bacteria","score_opus":0.005034290085226553,"score_gpt":0.24186965984270442,"score_spread":0.23683536975747788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415309045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97918797,0.000008341527,0.0012227271,0.00016408459,0.00084115064,0.000127316,0.0000067615792,0.000057561258,0.018384099],"genre_scores_gemma":[0.998347,0.00008522323,0.000044452747,0.00031730183,0.000027710888,0.00000909782,0.000035161134,0.000004563346,0.0011295085],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99948347,0.00008553841,0.00015424269,0.00012564218,0.00003686626,0.0001142703],"domain_scores_gemma":[0.9997404,0.000027242178,0.000056835048,0.00012330823,0.0000139402555,0.000038233924],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012013031,0.00009430809,0.00009449439,0.00005673816,0.00025037857,0.000099333825,0.000045400895,0.000062324274,0.002956677],"category_scores_gemma":[0.000034439978,0.00009306523,0.000039281236,0.00014138916,0.00009367251,0.0004417462,0.000116596464,0.00015393611,0.00015099917],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044010703,0.00010746,0.011674799,0.000012805092,0.000014007618,6.343933e-7,0.00017605751,0.0000017682185,0.9659994,0.00020552686,0.0005606218,0.021202888],"study_design_scores_gemma":[0.00036039273,0.00006288976,0.9337261,0.000036247482,0.000013373502,0.000014621142,0.000030173587,0.00005304728,0.020059034,0.000065717286,0.04549508,0.00008332827],"about_ca_topic_score_codex":0.0029678708,"about_ca_topic_score_gemma":0.00097435457,"teacher_disagreement_score":0.9459404,"about_ca_system_score_codex":0.00014211271,"about_ca_system_score_gemma":0.00000644367,"threshold_uncertainty_score":0.9979547},"labels":[],"label_agreement":null}]}