{"meta":{"query_hash":"27597dca8add","filters":{"venue":"JMM Case Reports"},"cohort_total":14,"direct_labels_cover":0,"predictions_cover":14,"exported":14,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/27597dca8add","api":"https://metacan.xera.ac/api/v1/cohort?venue=JMM+Case+Reports"},"results":[{"id":"W2209850382","doi":"10.1099/jmmcr.0.005010","title":"Cerebral toxoplasmosis after rituximab therapy for splenic marginal zone lymphoma: a case report and review of the literature","year":2015,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Rituximab; Medicine; Toxoplasmosis; Brain biopsy; Pancytopenia; Population; Toxoplasma gondii; Opportunistic infection; Chemoprophylaxis; Lymphoma; Immunology; Pediatrics; Surgery; Pathology; Bone marrow; Biopsy; Viral disease; Human immunodeficiency virus (HIV); Antibody","score_opus":0.018007534554470503,"score_gpt":0.284032089407325,"score_spread":0.2660245548528545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2209850382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8106295,0.18648455,0.000007150889,0.0008752406,0.0005258471,0.0011682124,0.00013308409,0.000030259765,0.00014617677],"genre_scores_gemma":[0.9910536,0.0039569363,0.0002458661,0.00028768784,0.0000591337,0.0005209994,0.000057758432,0.000028491724,0.0037895506],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99800515,0.00023746463,0.0007164564,0.00051240454,0.00011269579,0.00041583218],"domain_scores_gemma":[0.9979606,0.00017325721,0.00048215393,0.00082867965,0.00048400415,0.000071278366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012315668,0.00027167317,0.00060745375,0.000083090985,0.0001993571,0.000025360234,0.000065733904,0.00022109084,0.000072632894],"category_scores_gemma":[0.0008532866,0.00016965315,0.0002469571,0.0002534147,0.0003437882,0.00012607597,0.0002224401,0.00022147386,0.000004807328],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061732606,0.00038940174,0.0059934296,0.0018137844,0.00049116055,0.94514465,0.0009976391,1.1548789e-7,0.00066666375,0.00002585367,0.038419403,0.0054405434],"study_design_scores_gemma":[0.0018802952,0.00019791475,0.00063652056,0.001041228,0.00009800164,0.88901013,0.00015674497,7.301266e-7,0.0037337786,0.000066015746,0.10300598,0.00017265692],"about_ca_topic_score_codex":0.00021000287,"about_ca_topic_score_gemma":0.00018326157,"teacher_disagreement_score":0.1825276,"about_ca_system_score_codex":0.00008393018,"about_ca_system_score_gemma":0.00031421805,"threshold_uncertainty_score":0.6918255},"labels":[],"label_agreement":null},{"id":"W2284132137","doi":"10.1099/jmmcr.0.005024","title":"Enteroccocus pallens as a potential novel human pathogen: three cases of spontaneous bacterial peritonitis","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal; Cégep de Rimouski; Jewish General Hospital; Institut National de Santé Publique du Québec","funders":"","keywords":"Spontaneous bacterial peritonitis; Microbiology; Biology; Pathogen; Human pathogen; Enterococcus; Virulence factor; Virulence; Antimicrobial; Antibiotics; Cirrhosis; Bacteria; Gene; Medicine; Genetics; Internal medicine","score_opus":0.01775381441321259,"score_gpt":0.2623612881910017,"score_spread":0.2446074737777891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2284132137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983041,0.00004399267,0.0003166472,0.00006726321,0.00060772727,0.00021684343,0.00018770815,0.000026071657,0.00022962266],"genre_scores_gemma":[0.99858207,0.000011132316,0.00023752371,0.000024767785,0.00044148625,0.000017879087,0.00018901052,0.000026532392,0.00046957916],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9985239,0.000044806908,0.00056856574,0.00049035664,0.00014781198,0.00022455161],"domain_scores_gemma":[0.99871933,0.000017269167,0.00032702443,0.0006268173,0.00019610552,0.00011343277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021194654,0.00017289807,0.00020827162,0.00004101213,0.000121219266,0.000040522893,0.00006236616,0.0001552996,0.00035787962],"category_scores_gemma":[0.000367612,0.00014231043,0.00016291515,0.000036819692,0.00010401221,0.00000797781,0.00011540341,0.00004332164,0.00000625558],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007987923,0.00012603968,0.0014415832,0.000017211221,0.00003303538,0.070684455,0.000028653127,3.047617e-7,0.9255874,0.000012088655,0.000085124026,0.0019042104],"study_design_scores_gemma":[0.00069950864,0.00053518376,0.0057039275,0.00006302724,0.000058031488,0.7368501,0.000081308965,0.000002210382,0.24684432,0.000061246676,0.008753121,0.00034802052],"about_ca_topic_score_codex":0.00035199462,"about_ca_topic_score_gemma":0.0010976221,"teacher_disagreement_score":0.67874306,"about_ca_system_score_codex":0.000023114617,"about_ca_system_score_gemma":0.000092297734,"threshold_uncertainty_score":0.58032507},"labels":[],"label_agreement":null},{"id":"W2294908205","doi":"10.1099/jmmcr.0.005017","title":"Paediatric meningococcaemia in northwestern Ontario, Canada: a case for publicly funded meningococcal B vaccination","year":2015,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Lakehead University; NOSM University","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Ceftriaxone; Vaccination; Neisseria meningitidis; Pediatrics; Emergency department; Streptococcus pneumoniae; Meningitis; Meningococcal disease; Rash; Vomiting; Pneumonia; Immunology; Antibiotics; Internal medicine; Microbiology","score_opus":0.026559448360883885,"score_gpt":0.25596926005665765,"score_spread":0.22940981169577376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2294908205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962132,0.00024493184,0.0000661902,0.00012888387,0.002144545,0.00067870447,0.000023541654,0.000060434435,0.00043954243],"genre_scores_gemma":[0.9979795,0.0000010819978,0.00007135611,0.000037935162,0.00013005626,0.00026032832,0.0001714556,0.000021587848,0.0013266478],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9984154,0.000085667314,0.00064148416,0.00041909568,0.00002886229,0.00040946918],"domain_scores_gemma":[0.99889475,0.00010208989,0.00031992164,0.00032633706,0.00026810955,0.00008876691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057553576,0.00021219975,0.0003265649,0.00021294011,0.00017800451,0.000048059846,0.000038469425,0.00024394806,0.0002397865],"category_scores_gemma":[0.00013077943,0.00019975277,0.000075914475,0.00025641732,0.000009759167,0.0002281929,0.00006357551,0.00023652556,0.0000052340147],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005245093,0.0006064865,0.67185503,0.00009186903,0.0003711252,0.24577871,0.004613248,0.00010941218,0.0066919755,0.000290046,0.057952173,0.011115413],"study_design_scores_gemma":[0.0030389049,0.00028724046,0.01518645,0.000010392845,0.00010899431,0.8146828,0.001156003,0.000023270472,0.0021345902,0.00010668134,0.16278829,0.00047640203],"about_ca_topic_score_codex":0.98541164,"about_ca_topic_score_gemma":0.9991401,"teacher_disagreement_score":0.6566686,"about_ca_system_score_codex":0.0008675659,"about_ca_system_score_gemma":0.0012142456,"threshold_uncertainty_score":0.81456816},"labels":[],"label_agreement":null},{"id":"W2340811756","doi":"10.1099/jmmcr.0.005034","title":"Recurrent sepsis and neuroinvasive disease in a neonate culture-positive for a Group B Streptococcus CPS III serotype, hvgA+ strain","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Pfizer","keywords":"Serotype; Group B; Sepsis; Meningitis; Streptococcus; Disease; Medicine; Streptococcus agalactiae; Neonatal sepsis; Group A; Microbiology; Immunology; Pediatrics; Biology; Bacteria; Internal medicine; Genetics","score_opus":0.014745498776757454,"score_gpt":0.28324785647920253,"score_spread":0.26850235770244507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2340811756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957279,0.00034590295,0.0003773215,0.000840481,0.00026560202,0.0016885714,0.0003444539,0.000062999905,0.00034679574],"genre_scores_gemma":[0.99777484,0.000106092375,0.00012881226,0.00021422387,0.00012053819,0.00037620956,0.000057991103,0.000022385853,0.0011988932],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9987947,0.000031199612,0.00035194063,0.0004348175,0.00013695052,0.00025040223],"domain_scores_gemma":[0.9990853,0.000079473786,0.00015631273,0.00023124601,0.0001114458,0.0003361946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012908192,0.00018449505,0.0002555376,0.00010150304,0.00007852845,0.000020288871,0.00001413339,0.00005832264,0.00004148376],"category_scores_gemma":[0.00016299574,0.000119763296,0.00011393489,0.00010960717,0.00006456093,0.00013746443,0.000046940506,0.00010599637,0.0000031619],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021744205,0.0011012559,0.059658736,0.0007251618,0.00027958592,0.7739389,0.001325824,0.0000056265108,0.031041414,0.0015289639,0.0027220808,0.12549803],"study_design_scores_gemma":[0.020061212,0.006182248,0.42302725,0.007089011,0.0017388135,0.39694375,0.0009062573,0.0003388213,0.01489829,0.017395966,0.10906263,0.0023557586],"about_ca_topic_score_codex":0.00033007842,"about_ca_topic_score_gemma":0.00033095648,"teacher_disagreement_score":0.37699515,"about_ca_system_score_codex":0.0000818075,"about_ca_system_score_gemma":0.0000768815,"threshold_uncertainty_score":0.48838055},"labels":[],"label_agreement":null},{"id":"W2399096442","doi":"10.1099/jmmcr.0.005045","title":"First reported case of Campylobacter lanienae enteritis in a human","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke; Institut National de Santé Publique du Québec","funders":"","keywords":"Enteritis; Campylobacter; Microbiology; Biology; Bacteria; Genetics","score_opus":0.03002921148517338,"score_gpt":0.2638738412166379,"score_spread":0.23384462973146455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2399096442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982721,0.00007689709,0.0000021570372,0.00045526933,0.00017722038,0.00019765638,0.000031988806,0.00004870499,0.0007380048],"genre_scores_gemma":[0.9993923,0.000026237674,0.0000200272,0.00008237233,0.00013734908,0.00002789645,0.000020076342,0.000001782895,0.00029200988],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.998055,0.0001156993,0.0009051385,0.00047304027,0.000102246166,0.0003488995],"domain_scores_gemma":[0.99888945,0.00023209208,0.000480024,0.00019657436,0.00007394478,0.0001279128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005817428,0.0001668614,0.00038076125,0.000028238228,0.00009490145,0.000012043607,0.00005178869,0.00015661669,0.0007028951],"category_scores_gemma":[0.00024054872,0.00005752529,0.00014022827,0.0002131856,0.000094907824,0.00010077574,0.00007777138,0.0000771827,0.0000059227978],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000012161703,0.000092060145,0.24467112,0.000009219595,0.000014675618,0.661691,0.000060919494,2.3619128e-7,0.08685442,0.000027620643,0.00040086434,0.0061657066],"study_design_scores_gemma":[0.00018815875,0.00018013798,0.2151037,0.000090301095,0.000016062571,0.77238387,0.00013353306,0.0000017441773,0.0023928408,0.00050826214,0.008791351,0.00021005672],"about_ca_topic_score_codex":0.007071036,"about_ca_topic_score_gemma":0.025332185,"teacher_disagreement_score":0.110692866,"about_ca_system_score_codex":0.000049018927,"about_ca_system_score_gemma":0.000008657956,"threshold_uncertainty_score":0.999541},"labels":[],"label_agreement":null},{"id":"W2414301442","doi":"10.1099/jmmcr.0.005048","title":"Angioinvasive mucormycosis and paradoxical stroke: a case report","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; McGill University","funders":"","keywords":"Deferiprone; Medicine; Deferasirox; Malignancy; Transesophageal echocardiogram; Deferoxamine; Zygomycosis; Stroke (engine); Immunosuppression; Amphotericin B; Surgery; Thalassemia; Pediatrics; Dermatology; Internal medicine; Antifungal","score_opus":0.018265679119126643,"score_gpt":0.2881628882438661,"score_spread":0.26989720912473947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2414301442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950883,0.00046382705,0.00035164415,0.0007841798,0.0001473706,0.00038058468,0.000018903735,0.00008553925,0.0026796802],"genre_scores_gemma":[0.9937919,0.00006657044,0.00051702576,0.0001477809,0.0001603456,0.000026018643,0.00000632438,0.00002177317,0.005262268],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9980885,0.000036898662,0.00061825325,0.0006312423,0.000302533,0.0003226021],"domain_scores_gemma":[0.9982023,0.00016126655,0.0002342335,0.00081673946,0.00017082224,0.00041459253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005368074,0.00019091764,0.00040730508,0.00007192588,0.00012699103,0.000018526434,0.00001209119,0.0001452803,0.00020230186],"category_scores_gemma":[0.0011669269,0.00011862647,0.00018060228,0.000104353065,0.0001857608,0.00012575177,0.000050899725,0.0001300236,0.0000122927395],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009146187,0.000091871,0.14108784,0.000051270683,0.00005596987,0.8466996,0.00006523257,1.793521e-8,0.0040042764,0.000022766568,0.0016924929,0.0061372034],"study_design_scores_gemma":[0.00044192115,0.00016643592,0.01639366,0.00010085612,0.00015835118,0.97536623,0.00028600084,0.0000041959347,0.0033763298,0.0000964491,0.0034495452,0.0001600319],"about_ca_topic_score_codex":0.00018735029,"about_ca_topic_score_gemma":0.00027471554,"teacher_disagreement_score":0.12866664,"about_ca_system_score_codex":0.000095902455,"about_ca_system_score_gemma":0.00019462577,"threshold_uncertainty_score":0.4837447},"labels":[],"label_agreement":null},{"id":"W2512028827","doi":"10.1099/jmmcr.0.005064","title":"Haemophilus influenzae type a as a cause of paediatric septic arthritis","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University","funders":"","keywords":"Septic arthritis; Haemophilus influenzae; Medicine; Microbiology; Arthritis; Intensive care medicine; Immunology; Antibiotics; Biology","score_opus":0.015416768177879561,"score_gpt":0.26139925511231754,"score_spread":0.24598248693443797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2512028827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99546176,0.0020457814,0.0000058451838,0.00009930573,0.0015611441,0.00015099689,0.000014781189,0.000063547166,0.00059683726],"genre_scores_gemma":[0.99786353,0.00027424627,0.000012484481,0.00003201107,0.00009349795,0.000014334479,0.000008849,0.00001406174,0.0016870081],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99908954,0.00006064202,0.00042064307,0.0002165228,0.000014225512,0.00019843916],"domain_scores_gemma":[0.99914294,0.0000785128,0.0002442007,0.00035851682,0.0001477276,0.000028076935],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015107563,0.00011999851,0.00024563036,0.000121714475,0.00008053191,0.0000067908422,0.00002274702,0.00018193507,0.0015472142],"category_scores_gemma":[0.0002676623,0.00008202769,0.00008661301,0.00018454029,0.00006545825,0.000090933296,0.00005090316,0.00007489687,0.00030878957],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014988286,0.00025668927,0.02949454,0.000037174992,0.00036514687,0.032538358,0.00019386671,0.0000010355918,0.8946679,0.00031589862,0.009561012,0.032418445],"study_design_scores_gemma":[0.001554601,0.0006804633,0.011024373,0.000108749584,0.00015880149,0.72150856,0.000046000074,1.4077168e-7,0.09017806,0.00071365014,0.17366187,0.000364729],"about_ca_topic_score_codex":0.00053614395,"about_ca_topic_score_gemma":0.00012165688,"teacher_disagreement_score":0.8044899,"about_ca_system_score_codex":0.000022337976,"about_ca_system_score_gemma":0.0000949452,"threshold_uncertainty_score":0.9993655},"labels":[],"label_agreement":null},{"id":"W2522426954","doi":"10.1099/jmmcr.0.005066","title":"Streptococcus suis serotype 2 strains isolated in Argentina (South America) are different from those recovered in North America and present a higher risk for humans","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Serotype; Virulence; Streptococcus suis; Multilocus sequence typing; Biology; GenBank; Virology; Microbiology; Genotype; Typing; Meningitis; Human pathogen; Strain (injury); Pathogen; Bacteria; Genetics; Medicine; Gene","score_opus":0.03053061402157696,"score_gpt":0.29398906945952713,"score_spread":0.26345845543795016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2522426954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964388,0.00013352062,0.00015074978,0.00012683484,0.00017445015,0.0021278474,0.00068971934,0.000063405314,0.00009464708],"genre_scores_gemma":[0.998125,0.00016260399,0.00012217042,0.000026693402,0.00011104704,0.0006885967,0.00017604226,0.000037561804,0.00055026007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.998084,0.00007305115,0.0006279962,0.0006787509,0.00015662357,0.00037957865],"domain_scores_gemma":[0.99854624,0.000119846176,0.0005090577,0.0005307582,0.0000783314,0.00021577516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000050261508,0.0002931439,0.0005567354,0.00018793797,0.000079185826,0.000024713652,0.000022264783,0.000108850036,0.00037059907],"category_scores_gemma":[0.00010232058,0.00019348202,0.00014445095,0.0002743174,0.00006624075,0.000079405196,0.000050103466,0.00015935514,0.0000063736475],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017319956,0.00072937284,0.9694715,0.000027822603,0.00018953331,0.019339342,0.0003153934,0.000006700135,0.0002292432,5.0383784e-7,0.00017587085,0.009341532],"study_design_scores_gemma":[0.002765213,0.00051388866,0.99343586,0.00017756598,0.00023131231,0.00034612577,0.00015980455,0.000088457404,0.0001031905,0.000078156816,0.0018770667,0.00022336483],"about_ca_topic_score_codex":0.0033043225,"about_ca_topic_score_gemma":0.002948708,"teacher_disagreement_score":0.023964368,"about_ca_system_score_codex":0.00019189989,"about_ca_system_score_gemma":0.000047978105,"threshold_uncertainty_score":0.78899676},"labels":[],"label_agreement":null},{"id":"W2587090187","doi":"10.1099/jmmcr.0.005073","title":"Mandibular Actinomyces osteomyelitis mimicking osteosarcoma","year":2016,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Medicine; Actinomyces; Actinomycosis; Osteomyelitis; Presentation (obstetrics); Mandible (arthropod mouthpart); Surgery; Case presentation","score_opus":0.013570244781847618,"score_gpt":0.2700172285381025,"score_spread":0.2564469837562549,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587090187","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9602189,0.00031829302,0.0003097655,0.0007930004,0.0003450329,0.00042925103,0.0000069096673,0.00017131255,0.037407544],"genre_scores_gemma":[0.99521536,0.00004346716,0.0007595964,0.00005865348,0.0004247693,0.00006464417,0.000010256306,0.0000319662,0.0033913031],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99867904,0.000026185806,0.00039671868,0.00039609216,0.00019844896,0.00030351424],"domain_scores_gemma":[0.9989003,0.00008578458,0.00021805133,0.0005015823,0.000091743634,0.00020254703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001557135,0.00019497181,0.00028886058,0.00011764249,0.00017281306,0.000023325,0.000015213934,0.00009327459,0.0006585122],"category_scores_gemma":[0.000090922054,0.00012079804,0.00017854857,0.00011318007,0.00007145967,0.00014820363,0.000049752118,0.00009004038,0.000087856606],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003137017,0.0001006089,0.08564784,0.000038674167,0.00016480891,0.7721846,0.000069621005,1.9405405e-7,0.0030464083,0.000045478642,0.00017825364,0.13849215],"study_design_scores_gemma":[0.00077263213,0.00022580381,0.007749028,0.00015081531,0.00020091959,0.9187001,0.00008547454,0.0000017044849,0.012503624,0.00008871174,0.0593664,0.00015476592],"about_ca_topic_score_codex":0.00015984176,"about_ca_topic_score_gemma":0.000012805614,"teacher_disagreement_score":0.14651552,"about_ca_system_score_codex":0.00021345915,"about_ca_system_score_gemma":0.000089873975,"threshold_uncertainty_score":0.7210247},"labels":[],"label_agreement":null},{"id":"W2725148301","doi":"10.1099/jmmcr.0.005103","title":"Sinister seafood: bacteraemia secondary to non-O1/O139 Vibrio cholerae infection","year":2017,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McGill University","funders":"","keywords":"Medicine; Ciprofloxacin; Vibrio cholerae; Pathogen; Doxycycline; Bacteremia; Microbiology; Cefazolin; Medical history; Ceftriaxone; Internal medicine; Antibiotics; Immunology; Biology; Bacteria","score_opus":0.01622943771597894,"score_gpt":0.31706476154728,"score_spread":0.30083532383130107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2725148301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98564,0.000059926926,0.00013305318,0.00060577755,0.0007426951,0.00047961136,0.000029079198,0.000025111383,0.012284757],"genre_scores_gemma":[0.9953141,0.000050414495,0.00022443221,0.00039582688,0.0007306379,0.00010979547,0.000094729075,0.000040939696,0.0030391053],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99828166,0.00004336772,0.00036376313,0.0006662232,0.00020626759,0.00043872627],"domain_scores_gemma":[0.9977753,0.000008529852,0.00026645046,0.0014884034,0.0001981213,0.00026318998],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003542729,0.0002502999,0.00025913696,0.00007086602,0.00060622854,0.00032155804,0.00010455486,0.00018147044,0.00009332976],"category_scores_gemma":[0.0004029875,0.00023818437,0.0001514551,0.000044346296,0.00011144132,0.000026614782,0.00063512434,0.00019116497,0.000047371686],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015834777,0.00012423772,0.04436084,0.000116923766,0.00026412975,0.03822985,0.00020289543,0.000012376057,0.87001246,0.0000016513081,0.034072697,0.012443594],"study_design_scores_gemma":[0.000521578,0.00048332004,0.21602552,0.00004988953,0.00002933132,0.030310733,0.000020806281,0.000008449391,0.23939979,0.000014474167,0.51265913,0.00047698227],"about_ca_topic_score_codex":0.00045188295,"about_ca_topic_score_gemma":0.0007251152,"teacher_disagreement_score":0.6306127,"about_ca_system_score_codex":0.000055252884,"about_ca_system_score_gemma":0.00018220319,"threshold_uncertainty_score":0.9712876},"labels":[],"label_agreement":null},{"id":"W2733112879","doi":"10.1099/jmmcr.0.005100","title":"Marked peripheral eosinophilia due to prolonged administration of posaconazole","year":2017,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Manitoba","funders":"","keywords":"Posaconazole; Medicine; Eosinophilia; Abdominal pain; Eosinophil; Voriconazole; Mucormycosis; Surgery; Internal medicine; Dermatology; Gastroenterology; Antifungal","score_opus":0.021824676479742643,"score_gpt":0.32670322356525294,"score_spread":0.3048785470855103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2733112879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98983157,0.00004372789,0.000056009878,0.000928055,0.00018855378,0.0005623397,0.000008369396,0.000025883402,0.008355478],"genre_scores_gemma":[0.99654293,0.0000025393017,0.00049437827,0.000103744074,0.00011864413,0.00002095885,0.00001371105,0.000012358393,0.0026907644],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.99880564,0.000022882597,0.00042802075,0.00031169027,0.0002552163,0.00017653627],"domain_scores_gemma":[0.9983054,0.000015596883,0.0003077794,0.00100858,0.00018014201,0.00018254502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041342765,0.00011545613,0.00032092934,0.00003311864,0.00017994938,0.000035750207,0.000035009503,0.00008866012,0.00019455983],"category_scores_gemma":[0.00065327546,0.00009980163,0.00010920477,0.000038043127,0.00009440054,0.00012192214,0.000035680587,0.00010448406,0.000005518617],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002175978,0.00043329954,0.39942095,0.00035934578,0.000078704456,0.5341716,0.00038607346,9.020836e-7,0.052641623,0.000071980474,0.0018930895,0.008366499],"study_design_scores_gemma":[0.00037564314,0.000521695,0.90779424,0.0001030811,0.00007592696,0.07127059,0.00009674808,0.000031827843,0.018005382,0.00011606374,0.0014768426,0.00013196311],"about_ca_topic_score_codex":0.00013385467,"about_ca_topic_score_gemma":0.0004841092,"teacher_disagreement_score":0.50837326,"about_ca_system_score_codex":0.000054259133,"about_ca_system_score_gemma":0.00023097725,"threshold_uncertainty_score":0.40697926},"labels":[],"label_agreement":null},{"id":"W2785186902","doi":"10.1099/jmmcr.0.005140","title":"Mandibular osteomyelitis due to Raoultella species","year":2018,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"","keywords":"Osteomyelitis; Medicine; Odontogenic; Amoxicillin; Trismus; Abscess; Dentistry; Biology; Surgery; Microbiology; Pathology; Antibiotics","score_opus":0.02243764451428312,"score_gpt":0.3071045271186309,"score_spread":0.2846668826043478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2785186902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.926334,0.000057373705,0.00017468388,0.0005651913,0.00051933125,0.00059111085,0.000006813929,0.000097232514,0.07165426],"genre_scores_gemma":[0.98449916,0.0000051496977,0.00071089505,0.0002182698,0.0010927698,0.00006467306,0.000018430805,0.000019994874,0.013370641],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99899477,0.000013456871,0.00028909516,0.00031646783,0.00016165336,0.00022455276],"domain_scores_gemma":[0.99896705,0.000022272203,0.000072273106,0.0004988834,0.00017975934,0.00025977186],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00009689602,0.00013605657,0.00024252456,0.00010926961,0.00014328652,0.00003011017,0.000010067593,0.00006603365,0.0020118963],"category_scores_gemma":[0.00011462926,0.000108714135,0.0001004733,0.00021702207,0.00006877239,0.000043971537,0.000037226127,0.00006686424,0.00039562504],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049473827,0.00013569099,0.064750805,0.000026350055,0.00014936287,0.9060922,0.00020936293,7.300897e-7,0.0014178077,0.00009193964,0.010179955,0.016896302],"study_design_scores_gemma":[0.00047847792,0.00062466646,0.049659565,0.00006735285,0.00012065695,0.5872818,0.00007632879,0.000004663566,0.015675366,0.0001066047,0.34577474,0.00012978264],"about_ca_topic_score_codex":0.0003860216,"about_ca_topic_score_gemma":0.000096969285,"teacher_disagreement_score":0.33559477,"about_ca_system_score_codex":0.00009452075,"about_ca_system_score_gemma":0.00005170905,"threshold_uncertainty_score":0.9989004},"labels":[],"label_agreement":null},{"id":"W2810837846","doi":"10.1099/jmmcr.0.005158","title":"Mycobacterium xenopi systemic infection in a domestic fiery-shouldered conure bird (Pyrrhura egregia)","year":2018,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Ste. Anne's Hospital; Université de Montréal","funders":"McGill University","keywords":"Disease; Pathogen; Human disease; Biology; Pathology; Bacilli; Medicine; Immunology; Bacteria","score_opus":0.024902345670632996,"score_gpt":0.33243690219729216,"score_spread":0.3075345565266592,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810837846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99502355,0.0003656001,0.00005459515,0.00045067232,0.0010330179,0.0010717871,0.000009277171,0.00028635186,0.0017051471],"genre_scores_gemma":[0.9975364,0.00026713996,0.00008739013,0.00024213037,0.0009164557,0.0002145089,0.000038621856,0.00006601985,0.0006313006],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99736315,0.0001280044,0.0007828092,0.0006135012,0.00047614492,0.00063639897],"domain_scores_gemma":[0.9978322,0.00017406384,0.00028941195,0.00083374046,0.00039331542,0.00047730474],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006254725,0.00028470147,0.00058413926,0.0004628562,0.00011888264,0.00008437462,0.000035780828,0.00028794247,0.0005429759],"category_scores_gemma":[0.0014076596,0.00024588115,0.00014912926,0.00065413286,0.00014997754,0.00020778291,0.000078404526,0.00040496074,0.00018547186],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000257194,0.0002541872,0.53215116,0.00074704783,0.00007688193,0.44466212,0.0002989729,0.0000012414079,0.013561662,0.000011803725,0.005758196,0.0022195298],"study_design_scores_gemma":[0.0015640932,0.0010409469,0.26317814,0.0011734783,0.00014567284,0.7201061,0.00010006059,0.00012374629,0.003441719,0.00007532678,0.0086779995,0.00037270386],"about_ca_topic_score_codex":0.0037722923,"about_ca_topic_score_gemma":0.0013713839,"teacher_disagreement_score":0.27544397,"about_ca_system_score_codex":0.0003412342,"about_ca_system_score_gemma":0.00042802247,"threshold_uncertainty_score":0.99999934},"labels":[],"label_agreement":null},{"id":"W2897416556","doi":"10.1099/jmmcr.0.005168","title":"Case report: A fatal case of cryptococcosis in an immunocompetent patient due to Cryptococcus deuterogattii (AFLP6/VGII)","year":2018,"lang":"en","type":"article","venue":"JMM Case Reports","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Cryptococcus gattii; Cryptococcosis; Cryptococcus; Medicine; Pathology; Biology","score_opus":0.025006894445004858,"score_gpt":0.3150546918609735,"score_spread":0.29004779741596864,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897416556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952992,0.0001544752,0.00016061412,0.000117278905,0.00075060595,0.0021661513,0.000035438352,0.0000916812,0.0012245445],"genre_scores_gemma":[0.996772,0.0000041128887,0.0021174012,0.0001535614,0.00025810598,0.0005508349,0.000023685167,0.00004584002,0.0000744439],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9967987,0.000093235154,0.0015784339,0.00075076905,0.00029064258,0.00048821353],"domain_scores_gemma":[0.99695265,0.000076180295,0.000538302,0.0013187896,0.00070684357,0.00040721142],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005539853,0.000354815,0.0007985325,0.00044699523,0.00030667582,0.000038323797,0.000029422432,0.0001474499,0.00020345241],"category_scores_gemma":[0.00035822677,0.0003073936,0.00023972364,0.00061222824,0.00018113472,0.00018497955,0.00019772114,0.00026826345,0.000017037552],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013759152,0.0008672861,0.01147547,0.00010109838,0.00013353326,0.97503847,0.0029912817,0.000013817553,0.003021426,0.000024049248,0.00052273454,0.005673236],"study_design_scores_gemma":[0.000618296,0.002437157,0.0032390635,0.00019131905,0.00014495228,0.9810532,0.002367806,0.000083943916,0.0072408086,0.00003717153,0.00228618,0.00030011547],"about_ca_topic_score_codex":0.008055801,"about_ca_topic_score_gemma":0.0086569,"teacher_disagreement_score":0.008236406,"about_ca_system_score_codex":0.00025680248,"about_ca_system_score_gemma":0.00016455137,"threshold_uncertainty_score":0.99993783},"labels":[],"label_agreement":null}]}