{"meta":{"query_hash":"61813120159e","filters":{"venue":"Journal of Clinical Microbiology"},"cohort_total":1116,"direct_labels_cover":1,"predictions_cover":1116,"exported":1116,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/61813120159e","api":"https://metacan.xera.ac/api/v1/cohort?venue=Journal+of+Clinical+Microbiology"},"results":[{"id":"W1504286842","doi":"10.1128/jcm.38.2.941-942.2000","title":"Molecular Basis for Distinction of the ET-15 Clone within the ET-37 Complex of <b> <i>Neisseria meningitidis</i> </b>","year":2000,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Neisseria meningitidis; clone (Java method); Neisseriaceae; Biology; Microbiology; Virology; Genetics; Bacteria; Gene","score_opus":0.04799818259028567,"score_gpt":0.34102261352090735,"score_spread":0.2930244309306217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1504286842","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99420565,0.00067572936,0.0025862772,0.0000874086,0.0000231515,0.000043954988,0.00046054792,0.000022303619,0.0018950285],"genre_scores_gemma":[0.99333537,0.0003759061,0.0041874773,0.00008272711,0.000016486889,0.000014801757,0.0011314073,0.000011987584,0.00084396894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999861,0.000014497164,0.000015881951,0.000042439122,0.00003500505,0.000031125262],"domain_scores_gemma":[0.9997261,0.00006404716,0.00008829191,0.00002044427,0.00005527333,0.00004578869],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011273372,0.00018504639,0.00014482744,0.00034517652,0.00016576212,0.00035421358,0.0002492071,0.00039563535,0.00095361663],"category_scores_gemma":[0.0003717051,0.00009580357,0.0002005497,0.00020813856,0.00035117753,0.00017416246,0.00018758338,0.00026431293,0.0005186526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020996504,0.000048862094,0.009807295,0.000052177773,0.0000069049443,0.00035402775,0.00008880938,0.000095171024,0.9868628,0.00035535658,0.00007020028,0.002048469],"study_design_scores_gemma":[0.00004560478,0.00046961833,0.27931133,0.00005972306,0.00008497455,0.005245335,0.00032118396,0.0031581107,0.7015127,0.0004460129,0.009318244,0.000027210024],"about_ca_topic_score_codex":0.006679133,"about_ca_topic_score_gemma":0.0032811938,"teacher_disagreement_score":0.006679133,"about_ca_system_score_codex":0.00049409363,"about_ca_system_score_gemma":0.00029572443,"threshold_uncertainty_score":0.0132805705},"labels":[],"label_agreement":null},{"id":"W1508806353","doi":"10.1128/jcm.38.11.4288-4291.2000","title":"White Grain Mycetoma Caused by a <i>Cylindrocarpon</i> sp. in India","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Chlamydospore; Hypha; Hyaline; Conidium; Fungus; Biology; Mycetoma; Septate; Botany; Pathology; Medicine","score_opus":0.018614242533334435,"score_gpt":0.34038483880120085,"score_spread":0.3217705962678664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1508806353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99145716,0.00058213255,0.0007985772,0.00025473058,0.00003395973,0.000043800548,0.00006894001,0.000051195188,0.0067095733],"genre_scores_gemma":[0.998992,0.00023531237,0.00019701813,0.0001241629,0.00002394338,0.0000031591685,0.000022450953,0.0000049603104,0.0003969312],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99972194,0.000023559247,0.000021303867,0.000068380476,0.00004188722,0.00012299402],"domain_scores_gemma":[0.9995757,0.000077715726,0.00013959005,0.000033549215,0.000029501412,0.000143992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000076718985,0.00060310005,0.00031521413,0.00087096595,0.0014371414,0.0007927219,0.00044651944,0.0009868066,0.0010782845],"category_scores_gemma":[0.0005385192,0.00042343547,0.00032089793,0.00065878377,0.0007632835,0.00037079377,0.0006141385,0.00079272344,0.00036120505],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001657896,0.00010903494,0.07270829,0.00011358792,0.000023906636,0.9018461,0.0010579383,0.0001633842,0.016786028,0.00029301125,0.00045235464,0.0062805144],"study_design_scores_gemma":[0.000017892922,0.00039022637,0.06522704,0.000022621925,0.000041330346,0.9284451,0.00090790936,0.00019946166,0.003349481,0.00009562648,0.0012787796,0.000024520763],"about_ca_topic_score_codex":0.006034749,"about_ca_topic_score_gemma":0.008049642,"teacher_disagreement_score":0.006034749,"about_ca_system_score_codex":0.00042492631,"about_ca_system_score_gemma":0.0002926468,"threshold_uncertainty_score":0.011999249},"labels":[],"label_agreement":null},{"id":"W1515704896","doi":"10.1128/jcm.38.3.1023-1031.2000","title":"Prevalence and Characterization of Shiga Toxin-Producing <i>Escherichia coli</i> Isolated from Cattle, Food, and Children during a One-Year Prospective Study in France","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":311,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"","keywords":"Serotype; Feces; Biology; Escherichia coli; Microbiology; Shiga-like toxin; Diarrhea; Shiga toxin; Toxin; Strain (injury); Virology; Veterinary medicine; Gene; Medicine; Genetics","score_opus":0.01300088754339241,"score_gpt":0.293455022360483,"score_spread":0.2804541348170906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1515704896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997002,0.00006669212,0.000023248364,0.000014034597,0.0000013817505,0.0000030957965,0.00010230227,0.0000018124216,0.00008714658],"genre_scores_gemma":[0.99941623,0.00008541222,0.0000595358,0.000039600927,0.0000042847214,0.0000069955136,0.00027234157,0.0000015311427,0.00011403114],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992842,0.00015069655,0.000059589336,0.00015763851,0.00014707334,0.0002008068],"domain_scores_gemma":[0.99900204,0.00011907499,0.00035071454,0.000035704103,0.00019180568,0.00030064222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006177256,0.00051148434,0.00042286268,0.0010627153,0.0005827522,0.00093164406,0.00038314148,0.0008772852,0.00068553054],"category_scores_gemma":[0.0011484092,0.00047857087,0.00044224673,0.0007684303,0.0005191752,0.00048606814,0.00028492673,0.0005008164,0.00030076542],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031823693,0.0000290772,0.9987863,0.000005265288,0.000015466852,0.00011504556,0.0001478147,0.000020617721,0.0003930522,0.0000034402412,0.000039241702,0.00041292227],"study_design_scores_gemma":[0.0000025190436,0.00012704293,0.9990821,0.0000035384467,0.0000051290763,0.00034466173,0.00021820623,0.000047376187,0.000057587877,0.0000018381448,0.000107586886,0.0000024251715],"about_ca_topic_score_codex":0.04515912,"about_ca_topic_score_gemma":0.036120255,"teacher_disagreement_score":0.04515912,"about_ca_system_score_codex":0.0011543663,"about_ca_system_score_gemma":0.00048948114,"threshold_uncertainty_score":0.08979255},"labels":[],"label_agreement":null},{"id":"W1518464227","doi":"10.1128/jcm.38.11.4298-4299.2000","title":"Macrolide and Fluoroquinolone (Levofloxacin) Resistances among <b> <i>Streptococcus pneumoniae</i> Strains: Significant Trends from the SENTRY Antimicrobial Surveillance Program (North America, 1997–1999) </b>","year":2000,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Broth microdilution; Levofloxacin; Microbiology; Trovafloxacin; Ciprofloxacin; Antimicrobial; Medicine; Clinical microbiology; Antibacterial agent; Biology; Antibiotics; Minimum inhibitory concentration","score_opus":0.024776405311268585,"score_gpt":0.317210092800388,"score_spread":0.2924336874891194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1518464227","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99346876,0.0015467614,0.00012574751,0.00027886996,0.0000128027805,0.0000421481,0.0035527686,0.000015517122,0.0009566571],"genre_scores_gemma":[0.9928508,0.0015616693,0.00033048278,0.00029291134,0.000038924143,0.000023695799,0.004511094,0.000004858505,0.0003854819],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990871,0.00006613109,0.000081213264,0.00016076776,0.0004210274,0.0001837949],"domain_scores_gemma":[0.9971475,0.00019104982,0.001026176,0.00007428609,0.001202729,0.00035819554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048765604,0.0003152021,0.00029834136,0.0017592208,0.0005167668,0.00074190885,0.0006351322,0.0005666062,0.00054531766],"category_scores_gemma":[0.0013919431,0.00024377798,0.00025777775,0.0025843398,0.00038538093,0.00037499148,0.00042460038,0.0005502169,0.00012949629],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011420275,0.000042736152,0.9895517,0.00005356696,0.000045534496,0.0000803368,0.00025968428,0.000040314215,0.00087340025,0.000015160032,0.0010048812,0.00791842],"study_design_scores_gemma":[0.00000354645,0.000043689426,0.9987668,0.000010512435,0.000017628974,0.00013937417,0.00013760914,0.000067857494,0.0002274994,0.0000024689245,0.00058006315,0.0000029318364],"about_ca_topic_score_codex":0.48441696,"about_ca_topic_score_gemma":0.5712559,"teacher_disagreement_score":0.48441696,"about_ca_system_score_codex":0.0022937942,"about_ca_system_score_gemma":0.0026570482,"threshold_uncertainty_score":0.96319467},"labels":[],"label_agreement":null},{"id":"W1529948504","doi":"10.1128/jcm.03267-14","title":"Characterization of an Enterococcus gallinarum Isolate Carrying a Dual <i>vanA</i> and <i>vanB</i> Cassette","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Teicoplanin; Microbiology; Biology; Plasmid; Enterococcus; Vancomycin; Enterococcus faecalis; Enterococcus faecium; Gene; Bacteria; Genetics; Staphylococcus aureus; Antibiotics","score_opus":0.05720675735348054,"score_gpt":0.36828787473806607,"score_spread":0.31108111738458555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1529948504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958001,0.00029085347,0.0017438382,0.00024255711,0.00003122294,0.00008090963,0.00062509003,0.000025126696,0.0011603059],"genre_scores_gemma":[0.98946476,0.0004400433,0.0062213647,0.0001338319,0.000016665876,0.00003690296,0.0021090317,0.00002940438,0.0015481247],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997826,0.00002824613,0.00003460894,0.000050721963,0.000064460866,0.000039403913],"domain_scores_gemma":[0.99973625,0.0000665635,0.000054774904,0.000037506983,0.000054260494,0.00005067363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010624483,0.00040155207,0.0003030254,0.00031615014,0.00023803234,0.00047995424,0.00020565277,0.00047820155,0.00038072566],"category_scores_gemma":[0.00044929702,0.00010975781,0.00033579033,0.00031414913,0.00016123957,0.00018745768,0.00042840993,0.0005061197,0.00032212527],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004515654,0.00006485287,0.0022588274,0.000048322323,0.0000069498424,0.0013101398,0.00010676943,0.000050036622,0.9945821,0.00005435191,0.00004908039,0.001423291],"study_design_scores_gemma":[0.00003230239,0.001006227,0.08762113,0.000045669203,0.00010985196,0.024072064,0.0011718397,0.0012144907,0.87848395,0.00016076617,0.0060454253,0.000036344332],"about_ca_topic_score_codex":0.0022496607,"about_ca_topic_score_gemma":0.001666023,"teacher_disagreement_score":0.0022496607,"about_ca_system_score_codex":0.00014381157,"about_ca_system_score_gemma":0.00030257736,"threshold_uncertainty_score":0.00447315},"labels":[],"label_agreement":null},{"id":"W1575003330","doi":"10.1128/jcm.38.1.99-104.2000","title":"Performance of Indirect Immunoglobulin M (IgM) Serology Tests and IgM Capture Assays for Laboratory Diagnosis of Measles","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care; Montreal General Hospital; Ste. Anne's Hospital; St. John’s Health Sciences Centre","funders":"","keywords":"Measles; Serology; Measles virus; Immunoglobulin M; Antibody; Virology; Immunoglobulin G; Biology; Medicine; Immunology; Vaccination","score_opus":0.033014487405565444,"score_gpt":0.348836007887798,"score_spread":0.31582152048223255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1575003330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980601,0.0059800786,0.009361252,0.0000845642,0.00006785638,0.00015094042,0.0003171519,0.00008009012,0.0033572016],"genre_scores_gemma":[0.9881395,0.0009977337,0.009822831,0.00007814068,0.00003673034,0.000058499718,0.00045525338,0.000011373624,0.00039979664],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9868982,0.005751458,0.0010367889,0.0014748042,0.004377559,0.0004611676],"domain_scores_gemma":[0.9872464,0.007640341,0.0017057394,0.00069498125,0.0022537478,0.00045878778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011966239,0.0011508178,0.00068869826,0.0025291978,0.0003009774,0.0008556548,0.000922076,0.0008329965,0.0005373844],"category_scores_gemma":[0.019411232,0.0005770975,0.0007695393,0.0012488639,0.00069004577,0.0007316599,0.0006589379,0.0005473546,0.00041995823],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041030087,0.00067241903,0.8261326,0.0005434802,0.00041650332,0.00026210555,0.0006646697,0.0023522621,0.07138414,0.00023350999,0.00035346526,0.09288192],"study_design_scores_gemma":[0.00027726125,0.011889095,0.8304722,0.00018359857,0.0007537943,0.0028693066,0.0004603146,0.022293128,0.12716936,0.00034550572,0.003162797,0.00012364029],"about_ca_topic_score_codex":0.0019395967,"about_ca_topic_score_gemma":0.0021350463,"teacher_disagreement_score":0.011966239,"about_ca_system_score_codex":0.00063486176,"about_ca_system_score_gemma":0.0006885874,"threshold_uncertainty_score":0.06328428},"labels":[],"label_agreement":null},{"id":"W1602490076","doi":"10.1128/jcm.38.10.3652-3655.2000","title":"Evaluation of <scp>d</scp> -Xylose and 1% Methyl-α- <scp>d</scp> -Glucopyranoside Fermentation Tests for Distinguishing <i>Enterococcus gallinarum</i> from <i>Enterococcus faecium</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Enterococcus faecium; Xylose; Fermentation; Microbiology; Enterococcus faecalis; Enterococcus; Biology; Bacteria; Incubation; Food science; Staphylococcus aureus; Antibiotics; Biochemistry","score_opus":0.07083802836296677,"score_gpt":0.396455427934707,"score_spread":0.32561739957174024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1602490076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992591,0.0008838634,0.0053227795,0.000060840885,0.000022099883,0.000096870834,0.00023914332,0.000029628412,0.0007536779],"genre_scores_gemma":[0.9819489,0.00068546267,0.016181286,0.00008016557,0.000014100086,0.00008343288,0.0006439534,0.00001386463,0.00034886456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99761826,0.0007770543,0.00032178115,0.0005038316,0.0006383924,0.0001406604],"domain_scores_gemma":[0.99764544,0.0010767978,0.00044648699,0.00015027533,0.00048456714,0.00019651891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020371238,0.0008107847,0.00041749087,0.00067816756,0.0001671391,0.00045516097,0.00036308958,0.00062390865,0.00038968294],"category_scores_gemma":[0.0037737135,0.00036836273,0.00033356898,0.0005355832,0.00057573995,0.000358875,0.00037718835,0.00030897104,0.00028608387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097217,0.00015933265,0.026350284,0.00021436381,0.000054682398,0.00016708496,0.00015197061,0.0001980115,0.96490234,0.00002574362,0.000043465836,0.00676051],"study_design_scores_gemma":[0.00007346912,0.0052749487,0.14669998,0.000053639735,0.00021485727,0.0020384623,0.0002768236,0.002504147,0.84137726,0.000050898245,0.0014001931,0.00003539137],"about_ca_topic_score_codex":0.0012606765,"about_ca_topic_score_gemma":0.001574116,"teacher_disagreement_score":0.0020371238,"about_ca_system_score_codex":0.00023058233,"about_ca_system_score_gemma":0.00033363354,"threshold_uncertainty_score":0.01077348},"labels":[],"label_agreement":null},{"id":"W1609672590","doi":"10.1128/jcm.38.7.2763-2765.2000","title":"Evaluation of the Binax and Biotest Urinary Antigen Kits for Detection of Legionnaires' Disease Due to Multiple Serogroups and Species of <i>Legionella</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Legionella; Legionnaires' disease; Legionella pneumophila; Microbiology; Antigen; Virology; Biology; Urine; Urinary system; Immunoassay; Bacteria; Antibody; Immunology","score_opus":0.05012683201345554,"score_gpt":0.34706168845910396,"score_spread":0.29693485644564843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1609672590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764913,0.0006954793,0.00094399264,0.00003591656,0.000028846447,0.000037386653,0.00009163379,0.000015582742,0.00050194777],"genre_scores_gemma":[0.99557,0.00026576698,0.0035586145,0.000039972114,0.000008826911,0.00002573288,0.00025606915,0.000005010211,0.00027011443],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9947948,0.001747964,0.00050965574,0.00074069377,0.0019525003,0.0002543718],"domain_scores_gemma":[0.9935648,0.0031173183,0.0010876749,0.00027450916,0.0013842075,0.000571468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035845188,0.0006785855,0.0004673955,0.00093342457,0.00026415798,0.0005702937,0.0003002772,0.00051645294,0.0006406982],"category_scores_gemma":[0.007154946,0.00038674174,0.00026941698,0.00042384962,0.00050559966,0.0005560838,0.00041035982,0.00034737977,0.0002576819],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008789188,0.0011481626,0.7366235,0.00032429423,0.00032989628,0.00044270235,0.00077869184,0.0009302193,0.2139341,0.00016551233,0.00025393,0.0362798],"study_design_scores_gemma":[0.0004769748,0.034042556,0.76791984,0.00009081822,0.0004718238,0.007170993,0.00054376107,0.0066166692,0.17936379,0.00016619747,0.0030435356,0.000093073046],"about_ca_topic_score_codex":0.00089302525,"about_ca_topic_score_gemma":0.0020373333,"teacher_disagreement_score":0.0035845188,"about_ca_system_score_codex":0.0004341665,"about_ca_system_score_gemma":0.00032576986,"threshold_uncertainty_score":0.01895696},"labels":[],"label_agreement":null},{"id":"W1657621937","doi":"10.1128/jcm.01128-15","title":"Emergence of Serotype IV Group B Streptococcus Adult Invasive Disease in Manitoba and Saskatchewan, Canada, Is Driven by Clonal Sequence Type 459 Strains","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Mount Sinai Hospital; Saskatchewan Disease Control Laboratory; Manitoba Health; University of Toronto; Public Health Ontario","funders":"Wellcome Trust","keywords":"Serotype; Biology; Multilocus sequence typing; Tetracycline; Lincosamides; Erythromycin; Virology; Typing; Microbiology; Antibiotic resistance; Streptococcus; Clindamycin; Streptococcus agalactiae; Population; Genotype; Genetics; Antibiotics; Gene; Medicine; Bacteria","score_opus":0.05607710142555946,"score_gpt":0.34078602230687133,"score_spread":0.2847089208813119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1657621937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947901,0.0007231996,0.00022774962,0.0003661546,0.000011506164,0.000047565314,0.0014073717,0.0000139608055,0.0024123983],"genre_scores_gemma":[0.9948408,0.0013933254,0.0005423278,0.0003237566,0.0000062523786,0.000029526273,0.001259771,0.000008037383,0.0015962484],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99938476,0.000042715783,0.00003566516,0.000110311645,0.00019007265,0.00023660518],"domain_scores_gemma":[0.99870026,0.000055132685,0.00026815804,0.00003942602,0.0005867106,0.0003503292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042303946,0.00047126602,0.000254386,0.0011566431,0.001658819,0.0011552476,0.000756363,0.00025748275,0.0015228449],"category_scores_gemma":[0.000996227,0.0003299501,0.00031296173,0.0025827521,0.00078714476,0.00026449066,0.0009342164,0.0007471068,0.00015898314],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009816357,0.00003680786,0.9792516,0.000051844134,0.000058643767,0.0004585234,0.0012103978,0.00025983696,0.004586642,0.0002143288,0.0009996102,0.012773577],"study_design_scores_gemma":[0.000006143853,0.000025396008,0.99569184,0.000039641323,0.000020480957,0.00014113852,0.0022863895,0.0002605889,0.00032103455,0.00003338666,0.001162275,0.000011615303],"about_ca_topic_score_codex":0.9877193,"about_ca_topic_score_gemma":0.99486804,"teacher_disagreement_score":0.020280242,"about_ca_system_score_codex":0.020280242,"about_ca_system_score_gemma":0.04329255,"threshold_uncertainty_score":0.14714414},"labels":[],"label_agreement":null},{"id":"W1670090035","doi":"10.1128/jcm.38.7.2796-2797.2000","title":"Evaluation of Stability of Cefotaxime (30-μg) and Ceftazidime (30-μg) Disks Impregnated with Clavulanic Acid (10 μg) for Detection of Extended-Spectrum β-Lactamases","year":2000,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Systems, Applications & Products in Data Processing (Canada); Women's College Hospital; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Cefotaxime; Ceftazidime; Clavulanic acid; Aztreonam; Cefpodoxime; Klebsiella oxytoca; Microbiology; Ceftriaxone; Klebsiella pneumoniae; Amoxicillin; Chemistry; Biology; Antibiotics; Bacteria; Escherichia coli; Biochemistry","score_opus":0.03724525911105778,"score_gpt":0.33742110347721643,"score_spread":0.30017584436615863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1670090035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886358,0.004279925,0.004599431,0.000107236905,0.00007913,0.00014819283,0.000946984,0.00007086791,0.0011324629],"genre_scores_gemma":[0.99023825,0.0012530795,0.0055848793,0.00006538511,0.000033150223,0.000079229845,0.0014163126,0.000033166703,0.0012965725],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983352,0.00032950004,0.00018399878,0.00030543774,0.0007057795,0.0001402282],"domain_scores_gemma":[0.9972959,0.0006349771,0.00062467915,0.000148797,0.0010493661,0.00024620956],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016297378,0.0008844833,0.0006355079,0.0010909614,0.00037804944,0.00072046544,0.00064786273,0.0009928624,0.0011124468],"category_scores_gemma":[0.0030507473,0.00039764275,0.00055472786,0.00085987383,0.00042768568,0.0005497002,0.0003786226,0.0005002481,0.00055538886],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009824194,0.0002828029,0.004571065,0.00010502429,0.00005229323,0.00008338443,0.00012128546,0.00019906592,0.988988,0.000023547354,0.00006217678,0.0045288946],"study_design_scores_gemma":[0.000049320384,0.0055413465,0.06717839,0.000033644486,0.00014293977,0.00052860816,0.000118510725,0.0021988552,0.92257637,0.000032436594,0.0015612611,0.000038347505],"about_ca_topic_score_codex":0.002681289,"about_ca_topic_score_gemma":0.0018753937,"teacher_disagreement_score":0.002681289,"about_ca_system_score_codex":0.00055570685,"about_ca_system_score_gemma":0.00040784382,"threshold_uncertainty_score":0.00861901},"labels":[],"label_agreement":null},{"id":"W1678272492","doi":"10.1128/jcm.38.6.2162-2169.2000","title":"Enterohemorrhagic<i>Escherichia coli</i>(EHEC) Strains of Serogroup O118 Display Three Distinctive Clonal Groups of EHEC Pathogens","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Intimin; Serotype; Microbiology; Biology; Virulence; Escherichia coli; Shiga toxin; Virology; Hemolysin; Typing; Enterobacteriaceae; Genetics; Gene","score_opus":0.026825572165648216,"score_gpt":0.3333816333293094,"score_spread":0.3065560611636612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1678272492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994543,0.00013230316,0.00006261532,0.00001818493,0.0000010991049,0.0000034099423,0.00004099804,0.000002529826,0.00028452306],"genre_scores_gemma":[0.99920124,0.00018291078,0.00022736125,0.000023183593,0.0000065867002,0.0000024904919,0.00022599395,0.0000018742435,0.00012838219],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998369,0.00002073731,0.000012423053,0.000034152763,0.000031547428,0.00006418426],"domain_scores_gemma":[0.9997893,0.000040195453,0.0000720286,0.000014003226,0.000029430405,0.00005506977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008797144,0.0003193628,0.00014735405,0.00048207206,0.00029437503,0.00041320306,0.00016081608,0.00030817467,0.00097095466],"category_scores_gemma":[0.00049698394,0.0001363869,0.00010945909,0.00038643825,0.00035391012,0.00017758658,0.00028008944,0.0002316599,0.000215493],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030379093,0.000074582764,0.92180914,0.000056365934,0.00003103035,0.0076971715,0.0005987218,0.000056376837,0.06034922,0.000061232735,0.00022611291,0.00873624],"study_design_scores_gemma":[0.000018143803,0.00025479318,0.95468044,0.000017226504,0.00003941761,0.03596135,0.0009045146,0.00008802478,0.006508026,0.00003679792,0.0014831896,0.000008011901],"about_ca_topic_score_codex":0.0062461407,"about_ca_topic_score_gemma":0.00941649,"teacher_disagreement_score":0.0062461407,"about_ca_system_score_codex":0.00023999557,"about_ca_system_score_gemma":0.000121810954,"threshold_uncertainty_score":0.012419581},"labels":[],"label_agreement":null},{"id":"W1684140867","doi":"10.1128/jcm.01237-15","title":"Rapid Detection of KPC, NDM, and OXA-48-Like Carbapenemases by Real-Time PCR from Rectal Swab Surveillance Samples","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fraser Health; University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Microbiology; Real-time polymerase chain reaction; Medicine; Virology; Biology; Genetics; Gene","score_opus":0.029071727375258215,"score_gpt":0.30389201444205516,"score_spread":0.27482028706679695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1684140867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.51995915,0.003984684,0.4558768,0.0008740594,0.00039555022,0.0021255072,0.0073617743,0.004729933,0.004692596],"genre_scores_gemma":[0.4360641,0.0020632835,0.54396045,0.00070366287,0.00017633545,0.002712465,0.006370261,0.00026133462,0.0076881503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809295,0.0003092562,0.0001765436,0.00059251953,0.0006446578,0.00018411157],"domain_scores_gemma":[0.99899906,0.00035189366,0.00024073727,0.00009925223,0.00022835362,0.00008081041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010133239,0.0009196413,0.00079788483,0.0011420731,0.00030340554,0.00090334174,0.00087582186,0.0007627367,0.001685643],"category_scores_gemma":[0.0021125125,0.0007575394,0.0005123118,0.0004935476,0.00037555012,0.0005685347,0.00052919594,0.00094724126,0.0014525121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016922249,0.00014199632,0.0076101446,0.00017428576,0.000019457475,0.00014192349,0.000111323636,0.00031060254,0.964451,0.00015872622,0.00039021816,0.026321009],"study_design_scores_gemma":[0.000054924796,0.00086722674,0.015958082,0.00009465117,0.00008461012,0.0022629425,0.00012569869,0.009260141,0.956499,0.00029287767,0.014433807,0.000066037865],"about_ca_topic_score_codex":0.00057469145,"about_ca_topic_score_gemma":0.0011418223,"teacher_disagreement_score":0.001685643,"about_ca_system_score_codex":0.00030913722,"about_ca_system_score_gemma":0.00047071537,"threshold_uncertainty_score":0.0056390762},"labels":[],"label_agreement":null},{"id":"W1700611818","doi":"10.1128/jcm.38.7.2649-2654.2000","title":"Major Change in the Predominant Type of “Norwalk-Like Viruses” in Outbreaks of Acute Nonbacterial Gastroenteritis in Osaka City, Japan, between April 1996 and March 1999","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Outbreak; Feces; Virology; Typing; Biology; Genotype; Microbiology; Molecular epidemiology; Caliciviridae; Virus; Veterinary medicine; Norovirus; Medicine; Gene; Genetics","score_opus":0.10303820244040059,"score_gpt":0.425315122299072,"score_spread":0.3222769198586714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1700611818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99958855,0.00012649942,0.00003855837,0.00002328544,0.000006676699,0.000004718153,0.00007117642,0.0000025475842,0.0001379286],"genre_scores_gemma":[0.999297,0.00013593961,0.000103410996,0.000037817492,0.000013536425,0.00000749657,0.00028737634,0.0000029349683,0.00011446324],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993456,0.00007529856,0.00010987517,0.0001786291,0.00011510691,0.00017551037],"domain_scores_gemma":[0.99877006,0.00007865915,0.00060955575,0.000050216753,0.00023327305,0.00025815162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005310453,0.00048630152,0.00045663983,0.00085918466,0.00065306417,0.00095290464,0.00045392284,0.0006090907,0.0005656282],"category_scores_gemma":[0.0010821713,0.00052011036,0.00039301862,0.00071632286,0.0007496146,0.00055016123,0.0006443605,0.00045980376,0.00017679874],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036653405,0.000032111613,0.9894643,0.000029963363,0.000051821247,0.0010041286,0.0005572683,0.00005904214,0.0064684707,0.000010943677,0.00012084751,0.0018345834],"study_design_scores_gemma":[0.000005111201,0.000029158498,0.9989594,0.000005120774,0.000014494551,0.00032584966,0.00033343415,0.000035556808,0.00018184759,0.000003594835,0.00010298541,0.000003405398],"about_ca_topic_score_codex":0.015180206,"about_ca_topic_score_gemma":0.02166317,"teacher_disagreement_score":0.015180206,"about_ca_system_score_codex":0.00115868,"about_ca_system_score_gemma":0.00040080244,"threshold_uncertainty_score":0.030183673},"labels":[],"label_agreement":null},{"id":"W1702452676","doi":"10.1128/jcm.01447-15","title":"Comparison of Phenotypic and Genotypic Approaches to Capsule Typing of Neisseria meningitidis by Use of Invasive and Carriage Isolate Collections","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Carriage; Neisseria meningitidis; Genotyping; Biology; Multilocus sequence typing; Genotype; Microbiology; Typing; Serotype; Virology; Genetics; Medicine; Gene; Bacteria","score_opus":0.2583366282563189,"score_gpt":0.3647682154788934,"score_spread":0.10643158722257445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1702452676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9542536,0.0013751311,0.039200682,0.00013569818,0.000097184646,0.0006041593,0.0015197207,0.00019156869,0.0026223483],"genre_scores_gemma":[0.84292036,0.0025173759,0.14550763,0.00029029456,0.000094128394,0.0007062586,0.005873974,0.00015415039,0.0019357789],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9903071,0.0033731498,0.0009053657,0.0017305115,0.0032793053,0.00040456976],"domain_scores_gemma":[0.99133635,0.0037432658,0.0012902799,0.0011007811,0.002079966,0.0004493412],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005278068,0.0013750775,0.0013311539,0.002944065,0.000404656,0.0018609742,0.0014066858,0.0009080098,0.00047633512],"category_scores_gemma":[0.012610988,0.00071335334,0.0011372577,0.001960577,0.00077384233,0.00068264076,0.0014564658,0.0010868898,0.00050400867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018554654,0.0012807229,0.052308615,0.00084112346,0.0004989824,0.00017593056,0.0012658378,0.002358248,0.87373143,0.00031550508,0.00023314948,0.065135024],"study_design_scores_gemma":[0.00015266205,0.009274609,0.27325293,0.00015405996,0.0016462151,0.002578624,0.0013759003,0.020431971,0.68518656,0.00045004996,0.0051261205,0.00037029208],"about_ca_topic_score_codex":0.0024465933,"about_ca_topic_score_gemma":0.004357799,"teacher_disagreement_score":0.005278068,"about_ca_system_score_codex":0.0004424734,"about_ca_system_score_gemma":0.00050062995,"threshold_uncertainty_score":0.027913392},"labels":[],"label_agreement":null},{"id":"W1726846812","doi":"10.1128/jcm.05069-11","title":"Detection of an Influenza B Virus Strain with Reduced Susceptibility to Neuraminidase Inhibitor Drugs","year":2011,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; William Osler Health System; Toronto Public Health; Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; Public Health Agency; Public Health Agency of Canada","keywords":"Neuraminidase inhibitor; Neuraminidase; Virology; Strain (injury); Influenzavirus B; Microbiology; Orthomyxoviridae; Zanamivir; Virus; Influenza A virus; Biology; Medicine; Coronavirus disease 2019 (COVID-19); Internal medicine","score_opus":0.12912463916268685,"score_gpt":0.43270982240550043,"score_spread":0.3035851832428136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1726846812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.754159,0.0026765966,0.007841461,0.10464016,0.007844864,0.0009266352,0.00079170195,0.0006471369,0.120472446],"genre_scores_gemma":[0.9459561,0.0014905027,0.0026848929,0.030902479,0.0052657686,0.0001234277,0.00022754063,0.000074102216,0.013275221],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9992824,0.00017400175,0.00006263877,0.0001273818,0.00017245197,0.00018103984],"domain_scores_gemma":[0.99881727,0.000508933,0.00011808357,0.00011455339,0.00025177086,0.00018926617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043440767,0.0011171785,0.0009047424,0.00082318485,0.0009273907,0.00082167395,0.00085958384,0.0067555364,0.003599595],"category_scores_gemma":[0.0038639987,0.00026899297,0.0005017598,0.0004487594,0.00094032864,0.0008140109,0.00040217245,0.0031130088,0.0023027698],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070808665,0.0004353842,0.023988182,0.00015755673,0.000019485657,0.91073877,0.0007630453,0.00015790029,0.019642686,0.0019306767,0.025438068,0.016020205],"study_design_scores_gemma":[0.00015958212,0.0019057407,0.024403041,0.00014231983,0.000046861653,0.9359386,0.00065202214,0.0017961647,0.0054697795,0.0014898229,0.027941808,0.00005416104],"about_ca_topic_score_codex":0.0019346919,"about_ca_topic_score_gemma":0.0015895994,"teacher_disagreement_score":0.0067555364,"about_ca_system_score_codex":0.00069770025,"about_ca_system_score_gemma":0.0004226966,"threshold_uncertainty_score":0.012041807},"labels":[],"label_agreement":null},{"id":"W1755086295","doi":"10.1128/jcm.00591-15","title":"Molecular Types of Methicillin-Resistant Staphylococcus aureus and Methicillin-Sensitive S. aureus Strains Causing Skin and Soft Tissue Infections and Nasal Colonization, Identified in Community Health Centers in New York City","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Center for Advancing Translational Sciences; Agency for Healthcare Research and Quality; Canadian Centre for Applied Research in Cancer Control; Great Lakes Protection Fund","keywords":"Staphylococcus aureus; Colonization; Microbiology; Methicillin-resistant Staphylococcus aureus; Staphylococcal Skin Infections; Micrococcaceae; Staphylococcal infections; Medicine; Biology; Antibiotics; Antibacterial agent; Bacteria","score_opus":0.0769434254987643,"score_gpt":0.39439641491850524,"score_spread":0.3174529894197409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1755086295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993229,0.00017113825,0.000025011412,0.000023667506,0.0000041945214,0.000014438544,0.00028637206,0.0000017104394,0.00015061129],"genre_scores_gemma":[0.9987055,0.0002324889,0.00016138014,0.000036055542,0.000014367065,0.000022299648,0.00067083386,0.0000015373524,0.00015547434],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994072,0.0000659104,0.000096342184,0.0001329531,0.00018967944,0.000107972344],"domain_scores_gemma":[0.9986816,0.00021090834,0.000514352,0.000045971225,0.00022575,0.00032150236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040910777,0.00039968052,0.0002937025,0.0017672864,0.00063419226,0.00059227063,0.0003911615,0.00045414272,0.0014738454],"category_scores_gemma":[0.0014370811,0.00049342035,0.00020388096,0.0013699484,0.00057797297,0.00054465747,0.00054406386,0.00038154607,0.00018744661],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115628696,0.00005282822,0.9923969,0.000030344365,0.00002822241,0.0003115684,0.0004660712,0.000046944784,0.0047143474,0.000018699007,0.00020403246,0.001614279],"study_design_scores_gemma":[0.000010866384,0.000055804096,0.9985513,0.000007447922,0.000009024535,0.00037254373,0.00055664283,0.000078803336,0.0002256943,0.0000046712476,0.00012327779,0.000003899469],"about_ca_topic_score_codex":0.043548144,"about_ca_topic_score_gemma":0.07579728,"teacher_disagreement_score":0.043548144,"about_ca_system_score_codex":0.0008067037,"about_ca_system_score_gemma":0.0009336647,"threshold_uncertainty_score":0.08658934},"labels":[],"label_agreement":null},{"id":"W1761874602","doi":"10.1128/jcm.38.12.4580-4585.2000","title":"Fluorescent Amplified-Fragment Length Polymorphism Genotyping of <i>Neisseria meningitidis</i> Identifies Clones Associated with Invasive Disease","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Neisseria meningitidis; Genotyping; Multilocus sequence typing; Biology; Pulsed-field gel electrophoresis; Outbreak; Typing; Amplified fragment length polymorphism; Molecular epidemiology; Meningococcal disease; Genotype; Microbiology; Neisseriaceae; Genetics; Virology; Population; Genetic diversity; Gene; Bacteria; Medicine","score_opus":0.02738730732153986,"score_gpt":0.2921845108741617,"score_spread":0.2647972035526218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1761874602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715024,0.00010557304,0.0018186029,0.000021621863,0.0000030139017,0.000029553892,0.0002896935,0.0000122606925,0.0005694853],"genre_scores_gemma":[0.9902048,0.00017703016,0.008320724,0.00003577187,0.0000045042448,0.000025918878,0.0007240127,0.0000067629617,0.00050046906],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997267,0.00004059341,0.00002576286,0.000071715374,0.00007583602,0.0000594496],"domain_scores_gemma":[0.99952793,0.000147106,0.00013482015,0.000033678534,0.000108128115,0.00004841058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023117274,0.0002116693,0.00021136216,0.0005536365,0.00024703355,0.00031553858,0.00015156362,0.00034834695,0.0003557435],"category_scores_gemma":[0.0010272787,0.00009332455,0.00013375413,0.00042509325,0.00021561819,0.00011683955,0.00011561764,0.00018997355,0.000115440715],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031255226,0.00010582984,0.10015921,0.000059338337,0.000020589358,0.00039654903,0.00040132774,0.00017826211,0.88522375,0.00006086949,0.00013160265,0.012950034],"study_design_scores_gemma":[0.000025651521,0.0007967202,0.72540444,0.00003390288,0.000094290066,0.0032046302,0.0008120762,0.0021235156,0.26456547,0.0000935306,0.0028242087,0.000021637712],"about_ca_topic_score_codex":0.008079804,"about_ca_topic_score_gemma":0.017676204,"teacher_disagreement_score":0.008079804,"about_ca_system_score_codex":0.00028179513,"about_ca_system_score_gemma":0.00016968802,"threshold_uncertainty_score":0.016065538},"labels":[],"label_agreement":null},{"id":"W1769491266","doi":"10.1128/jcm.00650-15","title":"Development and Validation of Two Screening Assays for the Hepatitis C Virus NS3 Q80K Polymorphism Associated with Reduced Response to Combination Treatment Regimens Containing Simeprevir","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"Canadian Institutes of Health Research","keywords":"Simeprevir; Genotyping; Virology; Sanger sequencing; Hepatitis C virus; Biology; NS3; Genotype; Single-nucleotide polymorphism; Concordance; Ribavirin; Genetics; DNA sequencing; Virus; Gene","score_opus":0.18240066284097664,"score_gpt":0.4377139194360804,"score_spread":0.25531325659510373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1769491266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9413731,0.0009579914,0.05192517,0.00018634333,0.000094322415,0.00122404,0.0017116672,0.0005002095,0.0020270923],"genre_scores_gemma":[0.8987751,0.00029767695,0.0938178,0.00034953034,0.000036297446,0.001366659,0.003662589,0.00010552724,0.001588766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98804295,0.0038050907,0.00081350445,0.0024999843,0.0043564257,0.0004820121],"domain_scores_gemma":[0.99526775,0.0017209881,0.00074884784,0.0006586714,0.0012704083,0.00033324718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006156895,0.0012183872,0.0010567226,0.002174905,0.0003951932,0.0011386886,0.0011503565,0.001713806,0.0006367821],"category_scores_gemma":[0.008714218,0.0007775156,0.000946354,0.0008321214,0.00091720594,0.00038497886,0.00094868045,0.00090156746,0.0006928447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003140458,0.0015506644,0.113997534,0.00029440137,0.00033802362,0.00015192883,0.0005380738,0.0029311439,0.8263349,0.00022655512,0.00043962986,0.050056707],"study_design_scores_gemma":[0.0007948946,0.007754127,0.21407893,0.00010779326,0.00054599025,0.001791239,0.00019321908,0.036950227,0.73304427,0.00021892587,0.004364385,0.00015608565],"about_ca_topic_score_codex":0.0016097565,"about_ca_topic_score_gemma":0.0017383645,"teacher_disagreement_score":0.006156895,"about_ca_system_score_codex":0.0007002335,"about_ca_system_score_gemma":0.000843936,"threshold_uncertainty_score":0.032561123},"labels":[],"label_agreement":null},{"id":"W1791412297","doi":"10.1128/jcm.38.2.513-520.2000","title":"Rapid Identification of Bacteria from Positive Blood Cultures by Fluorescence-Based PCR–Single-Strand Conformation Polymorphism Analysis of the 16S rRNA Gene","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba","funders":"","keywords":"Bacteremia; Single-strand conformation polymorphism; Biology; Blood culture; 16S ribosomal RNA; Microbiology; Bacteria; Pathogen; Polymerase chain reaction; Genetics; Gene; Antibiotics","score_opus":0.020325405069483563,"score_gpt":0.2892113467152765,"score_spread":0.26888594164579294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1791412297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9450382,0.0021060836,0.048384953,0.00018948416,0.000071991715,0.0003824828,0.0010516692,0.00020279537,0.0025722934],"genre_scores_gemma":[0.9060256,0.0024794894,0.086908795,0.00023027448,0.000054088145,0.00036897277,0.0020619498,0.00004327947,0.0018275616],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895096,0.0003505308,0.00017923707,0.0001796423,0.00028569164,0.0000539736],"domain_scores_gemma":[0.9990551,0.00043433814,0.00018065445,0.00009061863,0.00020334587,0.000036009253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012940605,0.00048326,0.000358505,0.0011731723,0.00018231758,0.00047809578,0.00027470232,0.00033841262,0.0008183873],"category_scores_gemma":[0.0022937765,0.00024927483,0.00024058232,0.00057798985,0.00033086893,0.00036210593,0.00027017272,0.00034811342,0.00072939903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038046218,0.00011366852,0.032526903,0.0001912951,0.000026208889,0.0006419023,0.00027782223,0.00023711802,0.9279834,0.00013294152,0.00033596042,0.037152372],"study_design_scores_gemma":[0.000059951584,0.0021197668,0.19298472,0.0002103001,0.00011675576,0.009183276,0.0007057112,0.0074458886,0.7777226,0.0004242347,0.008954899,0.000071865376],"about_ca_topic_score_codex":0.00038330714,"about_ca_topic_score_gemma":0.00076547865,"teacher_disagreement_score":0.0012940605,"about_ca_system_score_codex":0.00011488538,"about_ca_system_score_gemma":0.00020688375,"threshold_uncertainty_score":0.0068437457},"labels":[],"label_agreement":null},{"id":"W1796681918","doi":"10.1128/jcm.02201-15","title":"High Incidence of Invasive Group A Streptococcus Disease Caused by Strains of Uncommon <i>emm</i> Types in Thunder Bay, Ontario, Canada","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; Public Health Ontario; Hospital for Sick Children; Lakehead University; Mount Sinai Hospital; Thunder Bay Regional Health Sciences Centre; University of Toronto","funders":"Public Health Ontario","keywords":"Bay; Population; Outbreak; Incidence (geometry); Disease; Epidemiology; Medicine; Biology; Demography; Virology; Environmental health; Geography; Pathology; Archaeology","score_opus":0.046292770750482076,"score_gpt":0.33559850613061126,"score_spread":0.28930573538012916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1796681918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99286795,0.0007744037,0.0001336186,0.00036181454,0.000018919705,0.000050840303,0.0023178598,0.000029412917,0.003445249],"genre_scores_gemma":[0.99775666,0.00047443036,0.00016264588,0.00011234833,0.00000794372,0.000008290182,0.000801484,0.000007572841,0.0006685578],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99893564,0.000045821955,0.000062350606,0.00019370594,0.00041271278,0.00034973287],"domain_scores_gemma":[0.9974425,0.00009283593,0.0006218891,0.00007371742,0.001039604,0.0007294674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033765333,0.0005091706,0.0004724595,0.0019702625,0.0029552758,0.0015837506,0.0012874581,0.00046455674,0.002419492],"category_scores_gemma":[0.0014981548,0.0004882121,0.00047701216,0.0031523576,0.0011227374,0.00043783998,0.000923456,0.00070269825,0.00020778977],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059008195,0.000015933434,0.99376416,0.00003712656,0.000050470215,0.0003428134,0.0008213285,0.00008880187,0.0014404074,0.00004974801,0.0008185479,0.0025116107],"study_design_scores_gemma":[0.000005066188,0.00001639863,0.99764985,0.000019685733,0.000013394285,0.00016078193,0.0012047674,0.00014959024,0.00009212226,0.000010543416,0.00066894066,0.000008804139],"about_ca_topic_score_codex":0.99211484,"about_ca_topic_score_gemma":0.99643636,"teacher_disagreement_score":0.024879975,"about_ca_system_score_codex":0.024879975,"about_ca_system_score_gemma":0.022710724,"threshold_uncertainty_score":0.18051773},"labels":[],"label_agreement":null},{"id":"W1836636493","doi":"10.1128/jcm.01816-15","title":"Diagnostic Accuracy of Rapid Antigen Detection Tests for Respiratory Syncytial Virus Infection: Systematic Review and Meta-analysis","year":2015,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":248,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Confidence interval; Medicine; Meta-analysis; Internal medicine; Population; Study heterogeneity; Publication bias; Immunology","score_opus":0.44431053921097746,"score_gpt":0.5691069103056816,"score_spread":0.12479637109470415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1836636493","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0037926643,0.9942878,0.00052162167,0.00016264466,0.00012208376,0.0002634915,0.0006112169,0.000027426795,0.00021098909],"genre_scores_gemma":[0.1508431,0.8420339,0.0027554182,0.0008985103,0.00029942804,0.0014577212,0.0013220491,0.000042865035,0.00034700887],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.98757553,0.0055290656,0.0039508627,0.001271149,0.0012872766,0.00038614174],"domain_scores_gemma":[0.9660166,0.026365465,0.0041651833,0.0007880607,0.0023727226,0.00029203595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018449204,0.0029176706,0.021619003,0.008231324,0.00062952994,0.0035483153,0.0024893128,0.0022324189,0.0029343155],"category_scores_gemma":[0.051415004,0.0017156147,0.0367355,0.008922699,0.00078673504,0.0019126075,0.0015580477,0.0016992205,0.00033778424],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011899291,0.000014298561,0.004103126,0.48552054,0.49800676,0.00012331121,0.00008136387,0.00054317975,0.00019098194,0.000101275196,0.00063242996,0.009492766],"study_design_scores_gemma":[0.00032447494,0.000107179,0.0029523403,0.027339,0.9675175,0.00009511502,0.000032283886,0.00017269504,0.00012091845,0.00013642437,0.0011819794,0.000020131405],"about_ca_topic_score_codex":0.007901604,"about_ca_topic_score_gemma":0.015684653,"teacher_disagreement_score":0.021619003,"about_ca_system_score_codex":0.0033017506,"about_ca_system_score_gemma":0.0037483238,"threshold_uncertainty_score":0.09756988},"labels":[],"label_agreement":null},{"id":"W1841837881","doi":"10.1128/jcm.38.7.2622-2627.2000","title":"Analytical Sensitivity, Reproducibility of Results, and Clinical Performance of Five PCR Assays for Detecting <i>Chlamydia pneumoniae</i> DNA in Peripheral Blood Mononuclear Cells","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Biology; Molecular biology; Nested polymerase chain reaction; Peripheral blood mononuclear cell; Chlamydia; Chlamydophila pneumoniae; Reproducibility; Polymerase chain reaction; Amplicon; Microbiology; Chlamydiaceae; Immunology; Gene; Chemistry; In vitro","score_opus":0.04409862307073234,"score_gpt":0.3629721891366673,"score_spread":0.318873566065935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1841837881","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9676077,0.0017802136,0.028251495,0.00008128762,0.00011553519,0.00022132666,0.000274734,0.00022584587,0.001441889],"genre_scores_gemma":[0.96877307,0.00028064282,0.029693889,0.00008844363,0.000043708387,0.00020952591,0.00057413685,0.000039931936,0.00029673552],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9496468,0.02209801,0.006876511,0.0074125156,0.012665982,0.0013001347],"domain_scores_gemma":[0.9411781,0.039571863,0.006136604,0.0045013437,0.007854804,0.0007572576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.027951276,0.0011447791,0.0010422886,0.0015396256,0.00046284462,0.0016352237,0.0013538162,0.0021478953,0.0005013881],"category_scores_gemma":[0.051842924,0.0008160484,0.0010765868,0.0009217299,0.0013895114,0.0006686294,0.00088059244,0.000888686,0.00053525297],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007323192,0.0016343406,0.5137336,0.0010521347,0.0015427748,0.00032300546,0.002555733,0.006389512,0.4076817,0.00034281172,0.0004781842,0.056942917],"study_design_scores_gemma":[0.00034234676,0.019918447,0.4402157,0.00018137011,0.0014588815,0.0021675015,0.0006968964,0.028238192,0.50405467,0.00025541845,0.0022152527,0.00025534243],"about_ca_topic_score_codex":0.00069691474,"about_ca_topic_score_gemma":0.00079558167,"teacher_disagreement_score":0.027951276,"about_ca_system_score_codex":0.0006379788,"about_ca_system_score_gemma":0.00039144614,"threshold_uncertainty_score":0.1478222},"labels":[],"label_agreement":null},{"id":"W1857456414","doi":"10.1128/jcm.38.9.3280-3284.2000","title":"Development of a Rapid PCR Assay Specific forStaphylococcus saprophyticus and Application to Direct Detection from Urine Samples","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Staphylococcus saprophyticus; Urine; Biology; Microbiology; Bacteria; Staphylococcus; Staphylococcus aureus; Genetics","score_opus":0.03856659216622621,"score_gpt":0.32566375629134386,"score_spread":0.28709716412511765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1857456414","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35296154,0.008326607,0.62796247,0.000536618,0.00049107213,0.002685046,0.001099847,0.0017554987,0.0041812686],"genre_scores_gemma":[0.26348975,0.0036873405,0.7240628,0.00048486932,0.00015102653,0.002053958,0.0026999244,0.00010624413,0.0032640514],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99738497,0.0006977708,0.00023522528,0.00069016,0.00075947796,0.00023243272],"domain_scores_gemma":[0.9977798,0.0010335414,0.00029296376,0.00013413896,0.0005912897,0.00016827136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00191884,0.0015186643,0.0012350355,0.0018348887,0.0002515849,0.0005562397,0.00078279217,0.0013009716,0.0014632834],"category_scores_gemma":[0.0034354958,0.0010511831,0.000776016,0.0007211819,0.00068494084,0.000629443,0.00064934784,0.0012376362,0.0016341093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009876223,0.00012566865,0.0012801733,0.00022691162,0.000013846436,0.00007039342,0.00005548953,0.00028226277,0.97915024,0.00020660557,0.0001544594,0.018335234],"study_design_scores_gemma":[0.00011632528,0.0023300573,0.0101514915,0.00014023294,0.000100186706,0.0018702506,0.00009905378,0.00889421,0.9673136,0.00048036675,0.008446924,0.000057281643],"about_ca_topic_score_codex":0.0004471334,"about_ca_topic_score_gemma":0.00065400905,"teacher_disagreement_score":0.00191884,"about_ca_system_score_codex":0.00029740276,"about_ca_system_score_gemma":0.00082020514,"threshold_uncertainty_score":0.010147929},"labels":[],"label_agreement":null},{"id":"W1873705790","doi":"10.1128/jcm.38.8.3096-3097.2000","title":"Use of 5-Bromo-4-Chloro-3-Indolyl-α- <scp>d</scp> - <i>N</i> -Acetylneuraminic Acid in a Novel Spot Test To Identify Sialidase Activity in Vaginal Swabs from Women with Bacterial Vaginosis","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"","keywords":"Sialidase; N-Acetylneuraminic acid; Microbiology; Chemistry; Vaginal secretion; Medicine; Biochemistry; Biology; Sialic acid; Enzyme; Gynecology; Neuraminidase","score_opus":0.06158736683284862,"score_gpt":0.36121548995411684,"score_spread":0.29962812312126824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1873705790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898683,0.0015458041,0.0063300105,0.00014357461,0.00006451774,0.00009440975,0.000086540946,0.00009600547,0.0017707974],"genre_scores_gemma":[0.9884001,0.00062460516,0.0100792525,0.000119167176,0.000030725616,0.000051342104,0.0001624226,0.0000068390814,0.0005255223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994387,0.00021377853,0.00004174425,0.00011469103,0.00013642908,0.00005464352],"domain_scores_gemma":[0.9987864,0.00059935433,0.00018194616,0.00009900349,0.0001831584,0.00015018458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006296413,0.00049628544,0.0003644304,0.00047322418,0.00016837429,0.00025093186,0.00042816866,0.0008846043,0.0006514035],"category_scores_gemma":[0.0019657249,0.00024746353,0.00032530524,0.0002523866,0.00042829357,0.00027380258,0.00022290804,0.0005103158,0.0003952704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034219876,0.00052210613,0.11450422,0.00020243585,0.00011158512,0.0010499341,0.00020442382,0.0002675828,0.8457661,0.000049027618,0.00018401486,0.033716604],"study_design_scores_gemma":[0.00040229424,0.016679943,0.39478666,0.00010793694,0.0003300499,0.026777947,0.00033569266,0.007864841,0.54962134,0.00017864916,0.0028401997,0.00007437821],"about_ca_topic_score_codex":0.0009024196,"about_ca_topic_score_gemma":0.0010661905,"teacher_disagreement_score":0.0009024196,"about_ca_system_score_codex":0.0001646076,"about_ca_system_score_gemma":0.0001713608,"threshold_uncertainty_score":0.0033299327},"labels":[],"label_agreement":null},{"id":"W1882058356","doi":"10.1128/jcm.38.1.110-119.2000","title":"In Vitro and In Vivo Evaluations of Sodium Lauryl Sulfate and Dextran Sulfate as Microbicides against Herpes Simplex and Human Immunodeficiency Viruses","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"In vivo; In vitro; Virology; Sulfate; Human immunodeficiency virus (HIV); Sodium; Microbiology; Chemistry; Biology; Biochemistry; Biotechnology","score_opus":0.04504961271039544,"score_gpt":0.4082009482044728,"score_spread":0.36315133549407735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1882058356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99196726,0.005522218,0.0013975857,0.00006162601,0.000066530614,0.00006838116,0.00011509389,0.000052629843,0.00074864714],"genre_scores_gemma":[0.9926312,0.0037929483,0.001804398,0.00004511208,0.00005758972,0.0000602808,0.00022138972,0.000013382855,0.0013736377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997485,0.00010191896,0.000019511415,0.000028823355,0.000042224274,0.000059005233],"domain_scores_gemma":[0.9997328,0.000085528955,0.000051910967,0.00001657139,0.00003602818,0.00007714585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056354376,0.0006055096,0.00040998252,0.0003042447,0.00013258235,0.00023533298,0.00022126907,0.00033884763,0.00074682356],"category_scores_gemma":[0.00030663193,0.00016987322,0.00028878398,0.00015411571,0.00027675225,0.00021185141,0.00010597194,0.00037246384,0.00015236755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018335407,0.00056234206,0.00045775564,0.00013254426,0.000030199746,0.00007092188,0.000045996134,0.00024060454,0.9891726,0.00008572796,0.000056873585,0.0073109744],"study_design_scores_gemma":[0.0001152944,0.025749894,0.0041612047,0.000011966887,0.000082019316,0.00017689075,0.00003311078,0.00082780106,0.96723896,0.000029487303,0.0015657842,0.0000076285187],"about_ca_topic_score_codex":0.0005534479,"about_ca_topic_score_gemma":0.0007000463,"teacher_disagreement_score":0.00074682356,"about_ca_system_score_codex":0.00014576734,"about_ca_system_score_gemma":0.00023229135,"threshold_uncertainty_score":0.0029803514},"labels":[],"label_agreement":null},{"id":"W1914804345","doi":"10.1128/jcm.02303-15","title":"Quality Assurance for Antimicrobial Susceptibility Testing of Neisseria gonorrhoeae in Canada, 2003 to 2012","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saskatchewan Disease Control Laboratory; Provincial Laboratory of Public Health; Ste. Anne's Hospital; Public Health Ontario; Public Health Agency of Canada; Toronto Public Health; University of Saskatchewan","funders":"","keywords":"Neisseria gonorrhoeae; Quality assurance; Microbiology; Antimicrobial; Medicine; Biology; External quality assessment; Pathology","score_opus":0.1596135755872978,"score_gpt":0.43700017936999747,"score_spread":0.27738660378269964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1914804345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9341652,0.010326713,0.0040021813,0.0021454436,0.00014258068,0.00096588203,0.032323483,0.0003484239,0.015580134],"genre_scores_gemma":[0.98347235,0.0020262103,0.0037413982,0.00050772395,0.00002173085,0.00012983366,0.007879262,0.000037097147,0.0021844592],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9883818,0.0007424306,0.00068478147,0.0007700736,0.008467951,0.0009529503],"domain_scores_gemma":[0.96305394,0.0013711624,0.0033668177,0.00058495224,0.030089052,0.0015342362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006490369,0.00038480147,0.00042865833,0.0029674752,0.0021934803,0.0015276356,0.0016247513,0.00029314135,0.0005680873],"category_scores_gemma":[0.019485401,0.00037473862,0.00045503821,0.0054347166,0.0008024724,0.00038257483,0.0008319748,0.00070258573,0.00011648279],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003366941,0.00008524668,0.93263096,0.00041925322,0.00013393443,0.00018956717,0.0015710029,0.00097403047,0.0022297737,0.00030853268,0.008065368,0.05305568],"study_design_scores_gemma":[0.000007130422,0.00003824687,0.99501425,0.00005240096,0.000021289863,0.00006590944,0.00022808986,0.00040718145,0.00055308273,0.000013407617,0.0035898052,0.000009332662],"about_ca_topic_score_codex":0.99077445,"about_ca_topic_score_gemma":0.9924825,"teacher_disagreement_score":0.053670682,"about_ca_system_score_codex":0.053670682,"about_ca_system_score_gemma":0.06376788,"threshold_uncertainty_score":0.3894099},"labels":[],"label_agreement":null},{"id":"W1921725164","doi":"10.1128/jcm.00906-15","title":"Analytical Comparison of <i>In Vitro</i> -Spiked Human Serum and Plasma for PCR-Based Detection of Aspergillus fumigatus DNA: a Study by the European Aspergillus PCR Initiative","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Instituto de Salud Carlos III; Pan American Health Organization; Grupo Ferrer Internacional, S.A; Debreceni Egyetem; Pfizer; Hospital for Sick Children; Astellas Pharma; Università degli Studi di Milano; Centre Hospitalier Universitaire Vaudois; Gilead Sciences; Emory University; European Commission; Fundación Mutua Madrileña","keywords":"Galactomannan; Aspergillus fumigatus; Whole blood; Aspergillus; Immunoassay; Chromatography; Blood plasma; Polymerase chain reaction; Centrifugation; Biology; Aspergillosis; Chemistry; Microbiology; Immunology; Biochemistry; Antibody","score_opus":0.1271621171085575,"score_gpt":0.41176141910966113,"score_spread":0.2845993020011036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1921725164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900912,0.0017020381,0.0073276563,0.000066763365,0.000014990365,0.00014536585,0.00015130898,0.000030415402,0.00047027817],"genre_scores_gemma":[0.9906735,0.00081017916,0.007367889,0.00021682479,0.000015947797,0.000061435036,0.0005974433,0.000024436935,0.00023241392],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9884367,0.0059382683,0.00086716993,0.0012842785,0.0032730584,0.00020054293],"domain_scores_gemma":[0.9923626,0.004353086,0.00094750646,0.0005417929,0.0015709498,0.00022398109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010494462,0.0006694385,0.0005547395,0.0006691011,0.00027910632,0.0010990341,0.00056423625,0.00088356936,0.0003404576],"category_scores_gemma":[0.01105767,0.0003944549,0.00078719924,0.00080252165,0.00091340055,0.00037206887,0.0003407893,0.00037453737,0.00021818171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012693832,0.005532933,0.26589677,0.0013937644,0.0010393357,0.0006894997,0.0023256438,0.0028285757,0.6147719,0.0004073406,0.0005997823,0.091820695],"study_design_scores_gemma":[0.0005277999,0.048463546,0.47810644,0.00016518099,0.0013434637,0.0057610883,0.0008662314,0.013450054,0.44552752,0.00028686054,0.0053875446,0.0001143342],"about_ca_topic_score_codex":0.0018139145,"about_ca_topic_score_gemma":0.0009596595,"teacher_disagreement_score":0.010494462,"about_ca_system_score_codex":0.0007078012,"about_ca_system_score_gemma":0.0005193323,"threshold_uncertainty_score":0.055500627},"labels":[],"label_agreement":null},{"id":"W1963642555","doi":"10.1128/jcm.44.3.1141-1144.2006","title":"Novel Multiplex PCR Assay for Detection of the Staphylococcal Virulence Marker Panton-Valentine Leukocidin Genes and Simultaneous Discrimination of Methicillin-Susceptible from -Resistant Staphylococci","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":405,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Panton–Valentine leukocidin; Leukocidin; Virulence; Multiplex; Microbiology; Staphylococcus aureus; Multiplex polymerase chain reaction; Biology; Virology; Staphylococcal infections; Micrococcaceae; Gene; Methicillin-resistant Staphylococcus aureus; Polymerase chain reaction; Bacteria; Genetics","score_opus":0.04014701238457586,"score_gpt":0.33448019355568465,"score_spread":0.2943331811711088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963642555","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49256948,0.009884947,0.48755717,0.0007299534,0.0012185995,0.0009855654,0.0011984537,0.0020648558,0.0037909665],"genre_scores_gemma":[0.50864494,0.0027754225,0.47802913,0.00045974742,0.00026857448,0.00058311556,0.0015340605,0.00006617367,0.0076388796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834216,0.00022936006,0.00013836358,0.00054241106,0.0006033956,0.00014426006],"domain_scores_gemma":[0.99894375,0.00034015992,0.00020565501,0.0000673736,0.00027878248,0.00016430198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012483217,0.0011157183,0.0008577045,0.0013005505,0.00021921245,0.000730925,0.0008229202,0.0010743779,0.0010601014],"category_scores_gemma":[0.0013772564,0.00067609956,0.00043021078,0.0003810786,0.0003581673,0.0007553135,0.00055887987,0.0012465846,0.0006475269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026441074,0.00018670181,0.0016555414,0.00012135681,0.000031979074,0.00019479345,0.00006843928,0.0004099703,0.97055763,0.00029292147,0.00033351177,0.025882902],"study_design_scores_gemma":[0.000145665,0.0021722422,0.005082938,0.00005493585,0.000186978,0.0052568587,0.00006648252,0.029285654,0.9449542,0.00040469063,0.012280106,0.000109173714],"about_ca_topic_score_codex":0.00037455917,"about_ca_topic_score_gemma":0.00073767884,"teacher_disagreement_score":0.0013005505,"about_ca_system_score_codex":0.0005820905,"about_ca_system_score_gemma":0.0003918983,"threshold_uncertainty_score":0.0066018105},"labels":[],"label_agreement":null},{"id":"W1963979170","doi":"10.1128/jcm.43.10.5026-5033.2005","title":"Novel Multiplex PCR Assay for Characterization and Concomitant Subtyping of Staphylococcal Cassette Chromosome<i>mec</i>Types I to V in Methicillin-Resistant<i>Staphylococcus aureus</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1038,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Ministerio de Economía y Competitividad","keywords":"Subtyping; Multiplex; Multiplex polymerase chain reaction; Staphylococcus aureus; Microbiology; Biology; Staphylococcal infections; Methicillin-resistant Staphylococcus aureus; Polymerase chain reaction; Genetics; Bacteria; Gene; Programming language","score_opus":0.0515623613397304,"score_gpt":0.3606561527503346,"score_spread":0.30909379141060417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963979170","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.45541453,0.007500362,0.52794623,0.00025932424,0.00059252727,0.0010292943,0.0016819163,0.0023155592,0.003260321],"genre_scores_gemma":[0.4791833,0.0025422673,0.509878,0.00034169466,0.00016408782,0.000956032,0.002346716,0.000072226496,0.004515614],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99787056,0.00030883955,0.00016426045,0.0009744754,0.00051192136,0.00017000493],"domain_scores_gemma":[0.9990947,0.00026501546,0.00023094745,0.000078589175,0.0002220246,0.000108779765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00104832,0.0014786349,0.0009081154,0.0011610349,0.00027236904,0.00067177636,0.0008277885,0.0010896723,0.0006835991],"category_scores_gemma":[0.0014198296,0.0005816932,0.0005334912,0.00058299,0.00042295398,0.00069462217,0.00058964477,0.0009485372,0.0006072466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015060426,0.00015566764,0.002030137,0.00013396068,0.000028888837,0.0000939229,0.000081643666,0.00036641362,0.9714864,0.00030173824,0.00029578642,0.024874957],"study_design_scores_gemma":[0.000040076487,0.0010262193,0.004993926,0.00003740976,0.00014697431,0.0014766676,0.000068415015,0.017261855,0.9682428,0.0002827954,0.006344866,0.00007799638],"about_ca_topic_score_codex":0.00035766812,"about_ca_topic_score_gemma":0.00065188704,"teacher_disagreement_score":0.0014786349,"about_ca_system_score_codex":0.00044367075,"about_ca_system_score_gemma":0.00044555363,"threshold_uncertainty_score":0.005544126},"labels":[],"label_agreement":null},{"id":"W1964843122","doi":"10.1128/jcm.05395-11","title":"First Comprehensive Evaluation of the M.I.C. Evaluator Device Compared to Etest and CLSI Broth Microdilution for MIC Testing of Aerobic Gram-Positive and Gram-Negative Bacterial Species","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Etest; Broth microdilution; Microbiology; Acinetobacter; Biology; Staphylococcus aureus; Antimicrobial; Bacteria; Minimum inhibitory concentration; Antibiotics","score_opus":0.1415015006005301,"score_gpt":0.39085240584180647,"score_spread":0.24935090524127637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964843122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89205134,0.026609547,0.052400783,0.00087069866,0.0004482077,0.0056504896,0.008673144,0.0018887722,0.011406925],"genre_scores_gemma":[0.88831985,0.006747821,0.08138689,0.0012441189,0.00035297446,0.002094513,0.010891288,0.00050661404,0.008455939],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9762897,0.014038333,0.001826925,0.0017028975,0.005760408,0.00038172753],"domain_scores_gemma":[0.96724117,0.012262303,0.004296654,0.002594374,0.012266409,0.0013390401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.034511216,0.0020414589,0.0036067187,0.002616923,0.0007737852,0.0017807896,0.0015429262,0.0018742095,0.001509052],"category_scores_gemma":[0.027425187,0.0009939503,0.0012698615,0.0019826868,0.000634172,0.0011809297,0.0014820576,0.0011508897,0.0007287991],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.103805706,0.007434715,0.13931748,0.0069124014,0.0026163172,0.00044838348,0.0036032058,0.003666822,0.2823153,0.0011502856,0.015618925,0.43311054],"study_design_scores_gemma":[0.0023706278,0.19339864,0.6047916,0.0007560979,0.0021711634,0.0019057543,0.00047329298,0.011065297,0.1483385,0.00020670654,0.033862285,0.0006600856],"about_ca_topic_score_codex":0.0022151638,"about_ca_topic_score_gemma":0.002988376,"teacher_disagreement_score":0.034511216,"about_ca_system_score_codex":0.0014095306,"about_ca_system_score_gemma":0.0012395917,"threshold_uncertainty_score":0.18251497},"labels":[],"label_agreement":null},{"id":"W1965068704","doi":"10.1128/jcm.43.12.6147-6149.2005","title":"Development of a Triplex Real-Time PCR Assay for Detection of Panton-Valentine Leukocidin Toxin Genes in Clinical Isolates of Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Saskatchewan Health","funders":"","keywords":"Leukocidin; Panton–Valentine leukocidin; Staphylococcus aureus; Microbiology; Biology; Methicillin-resistant Staphylococcus aureus; Toxin; Pathogen; Polymerase chain reaction; Virology; Staphylococcal infections; Gene; Bacteria; Genetics","score_opus":0.05940964240074442,"score_gpt":0.3782864035649813,"score_spread":0.31887676116423685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965068704","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7368077,0.0017031227,0.25568727,0.00039210863,0.000276772,0.0009191682,0.0008143487,0.0010428092,0.0023566603],"genre_scores_gemma":[0.5948709,0.00094225066,0.3967825,0.00036621487,0.000063707455,0.0010666902,0.0019234034,0.00007591654,0.003908416],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981427,0.00047969565,0.0001434395,0.00048952847,0.00060137175,0.00014325957],"domain_scores_gemma":[0.9983974,0.00069867435,0.00028369902,0.000108708926,0.00036864594,0.00014280909],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013936098,0.00074335106,0.00075309334,0.00081949815,0.0001919718,0.00073716126,0.00062994676,0.00088729797,0.0008773742],"category_scores_gemma":[0.002141402,0.00050213735,0.00038615247,0.0003019762,0.00047801994,0.00059467065,0.00039913415,0.0009553109,0.00056002976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013462952,0.000097450036,0.0012496798,0.000053692293,0.0000069771268,0.00005649293,0.00006583356,0.00015452669,0.98770046,0.00009502172,0.000079563324,0.010305839],"study_design_scores_gemma":[0.000057449255,0.0016991178,0.0058622384,0.00003165091,0.00004591743,0.000888698,0.000089636145,0.009525076,0.97905,0.00012328922,0.002590098,0.00003686597],"about_ca_topic_score_codex":0.0003830901,"about_ca_topic_score_gemma":0.00067229517,"teacher_disagreement_score":0.0013936098,"about_ca_system_score_codex":0.00038986653,"about_ca_system_score_gemma":0.00053127896,"threshold_uncertainty_score":0.0073702335},"labels":[],"label_agreement":null},{"id":"W1965780591","doi":"10.1128/jcm.00640-06","title":"Comparison of Dalbavancin MIC Values Determined by Etest (AB BIODISK) and Reference Dilution Methods Using Gram-Positive Organisms","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotics Pharmacokinetics and Efficacy","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"Pfizer Pharmaceuticals; Pfizer","keywords":"Etest; Dalbavancin; Broth microdilution; Microbiology; Minimum inhibitory concentration; Biology; Antimicrobial; Bacteria; Vancomycin","score_opus":0.10712285362025566,"score_gpt":0.5104107928342899,"score_spread":0.4032879392140343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965780591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9633703,0.002903851,0.028369704,0.00013879225,0.00013242841,0.0002108412,0.0009422935,0.00020895181,0.0037228342],"genre_scores_gemma":[0.9541526,0.0012074105,0.0415433,0.00013468646,0.000026296933,0.00019847818,0.0013112192,0.000042692685,0.0013833612],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9922178,0.0035062372,0.0010291968,0.0006799138,0.0023345463,0.0002323823],"domain_scores_gemma":[0.9903503,0.0055623986,0.00142103,0.00079805206,0.0016671455,0.00020101531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003180424,0.0005530276,0.0006079221,0.0012544779,0.0001566404,0.00062416715,0.0005483637,0.00091391196,0.0009417515],"category_scores_gemma":[0.012792192,0.00029357738,0.00031545587,0.0011195963,0.0004236349,0.00062884396,0.0005294093,0.00067325984,0.0005700619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0066170213,0.0007660967,0.07715926,0.0007059316,0.0003018027,0.00020594195,0.0006911497,0.0015433986,0.84419423,0.00049577374,0.00046945518,0.0668499],"study_design_scores_gemma":[0.000173639,0.009528203,0.17208754,0.000075420125,0.00023331858,0.0018521678,0.0003702518,0.010920217,0.8005755,0.0003400656,0.0037643465,0.00007943641],"about_ca_topic_score_codex":0.0007117823,"about_ca_topic_score_gemma":0.0009785444,"teacher_disagreement_score":0.003180424,"about_ca_system_score_codex":0.0002711577,"about_ca_system_score_gemma":0.00024979084,"threshold_uncertainty_score":0.016819894},"labels":[],"label_agreement":null},{"id":"W1966690773","doi":"10.1128/jcm.00863-06","title":"<i>Candida rugosa</i> , an Emerging Fungal Pathogen with Resistance to Azoles: Geographic and Temporal Trends from the ARTEMIS DISK Antifungal Surveillance Program","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Peking Union Medical College; Peking Union Medical College Hospital; Universidad de Buenos Aires; University of Alberta; Pfizer","keywords":"Voriconazole; Candida rugosa; Fluconazole; Candida krusei; Rugosa; Candida glabrata; Biology; Microbiology; Azole; Antifungal; Botany","score_opus":0.022044259125334874,"score_gpt":0.3416325259626754,"score_spread":0.31958826683734054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1966690773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905069,0.0016220328,0.0004295038,0.00035501292,0.000010806048,0.00004057587,0.0053936956,0.000031902837,0.0016095729],"genre_scores_gemma":[0.9920636,0.001029234,0.0011472747,0.00013919601,0.000028585431,0.000018576717,0.005346707,0.0000077848745,0.00021896581],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99955136,0.000073668685,0.000095363284,0.00009173113,0.00013064682,0.000057302965],"domain_scores_gemma":[0.9980095,0.00020240135,0.0011255876,0.000082303384,0.00045645266,0.00012375214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056870974,0.0001639999,0.00017716714,0.0020247812,0.0002143046,0.0007065537,0.00035964424,0.0002515132,0.000683503],"category_scores_gemma":[0.0020214366,0.00007483245,0.00024897244,0.0024624914,0.00018085504,0.0004260111,0.00030916018,0.00020051852,0.00021364704],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004139257,0.000017290966,0.9911068,0.00003620554,0.000024542513,0.00017768452,0.000089634115,0.00010133606,0.0006575225,0.00002169404,0.00046982497,0.0072559537],"study_design_scores_gemma":[0.0000016783874,0.000033323777,0.99694437,0.000020134092,0.000017214556,0.00068619446,0.0002152962,0.00030721544,0.00040447884,0.000013219076,0.001352716,0.0000041120597],"about_ca_topic_score_codex":0.03166328,"about_ca_topic_score_gemma":0.039767273,"teacher_disagreement_score":0.03166328,"about_ca_system_score_codex":0.000472471,"about_ca_system_score_gemma":0.0005025106,"threshold_uncertainty_score":0.06295794},"labels":[],"label_agreement":null},{"id":"W1967193095","doi":"10.1128/jcm.39.1.408-409.2001","title":"Detection of Group B Streptococcal Colonization in Pregnant Women Using Direct Latex Agglutination Testing of Selective Broth","year":2001,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Subculture (biology); Microbiology; Latex fixation test; Group B; Streptococcus; Agar; Agar plate; Streptococcus agalactiae; Medicine; Incubation; Biology; Bacteria; Immunology; Internal medicine; Antibody","score_opus":0.05213160958236276,"score_gpt":0.350602861152582,"score_spread":0.29847125157021925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967193095","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99355,0.0013893547,0.002527484,0.000079280035,0.000052806197,0.00034205496,0.0001822628,0.000058486483,0.0018182321],"genre_scores_gemma":[0.98466206,0.0012429464,0.012925589,0.00019928292,0.00003864617,0.00019529727,0.00029667225,0.000013154303,0.00042635252],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961144,0.0017111434,0.00031416322,0.0006280972,0.0010173628,0.00021477195],"domain_scores_gemma":[0.9983442,0.0007584245,0.00029396237,0.0001623151,0.0002682018,0.00017280527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019716658,0.00086647493,0.00068215176,0.0011687713,0.0002959966,0.00047412966,0.0005660286,0.0007098622,0.00064174354],"category_scores_gemma":[0.0053460645,0.00040589174,0.0003660139,0.00074779993,0.00072695396,0.0003090715,0.0005236042,0.00062147307,0.0004227758],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057431273,0.0018925102,0.5724646,0.00058936956,0.00016695444,0.0030723617,0.002345957,0.0001829976,0.37004706,0.00011478332,0.00031481404,0.043065492],"study_design_scores_gemma":[0.00028897604,0.038766008,0.69826454,0.00019141196,0.00041858843,0.016879208,0.001483978,0.0032322262,0.23752312,0.000118439435,0.002734967,0.00009844608],"about_ca_topic_score_codex":0.001952165,"about_ca_topic_score_gemma":0.0025307587,"teacher_disagreement_score":0.0019716658,"about_ca_system_score_codex":0.0002987062,"about_ca_system_score_gemma":0.0002700419,"threshold_uncertainty_score":0.010427296},"labels":[],"label_agreement":null},{"id":"W1967917710","doi":"10.1128/jcm.00042-08","title":"Multilocus Sequence Typing of <i>Campylobacter jejuni</i> Isolates from Humans, Chickens, Raw Milk, and Environmental Water in Quebec, Canada","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke","funders":"University of Oxford","keywords":"Multilocus sequence typing; Typing; Biology; Campylobacter jejuni; Pulsed-field gel electrophoresis; Molecular epidemiology; Microbiology; Raw milk; Campylobacter; Genotype; Veterinary medicine; Genetics; Bacteria; Gene; Food science; Medicine","score_opus":0.038613230046039664,"score_gpt":0.261483109579373,"score_spread":0.22286987953333331,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967917710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968912,0.00068200764,0.00025083523,0.00012896497,0.00000722791,0.00003530046,0.0010273642,0.000009961996,0.00096708554],"genre_scores_gemma":[0.9971826,0.00031193215,0.0005459377,0.00008684857,0.000005443883,0.000010132678,0.0012711341,0.0000049382543,0.0005810194],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995485,0.000038460643,0.00002562063,0.00009743864,0.00018867476,0.00010137853],"domain_scores_gemma":[0.9990896,0.00007672318,0.00012555312,0.000022084014,0.0004875462,0.00019843587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004492752,0.00029304269,0.00025646866,0.000916078,0.0013691769,0.00064271246,0.0005168693,0.0002633086,0.0006025695],"category_scores_gemma":[0.0009074507,0.00019456123,0.00018777468,0.0012803387,0.0005488139,0.00016584575,0.00029245517,0.0002745057,0.00010329047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021296347,0.00005093581,0.9584217,0.00011469337,0.0000767897,0.000499082,0.0014807392,0.0005599841,0.0149822375,0.00007418931,0.0016360297,0.021890825],"study_design_scores_gemma":[0.0000071246654,0.00004763506,0.99641114,0.000022298631,0.00001886568,0.00016485072,0.00057755184,0.00044954117,0.00069415197,0.0000067408027,0.0015921264,0.000008015244],"about_ca_topic_score_codex":0.97133,"about_ca_topic_score_gemma":0.9825801,"teacher_disagreement_score":0.028670013,"about_ca_system_score_codex":0.010284568,"about_ca_system_score_gemma":0.0058499193,"threshold_uncertainty_score":0.07462013},"labels":[],"label_agreement":null},{"id":"W1968177952","doi":"10.1128/jcm.42.8.3686-3695.2004","title":"Use of <i>tuf</i> Sequences for Genus-Specific PCR Detection and Phylogenetic Analysis of 28 Streptococcal Species","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Canada Research Chairs","keywords":"Phylogenetic tree; Biology; Phylogenetics; Polymerase chain reaction; Genus; Evolutionary biology; Genetics; Zoology; Gene","score_opus":0.1194420113675583,"score_gpt":0.3766835671361425,"score_spread":0.2572415557685842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968177952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89619523,0.0021219957,0.094163984,0.0002395213,0.00015980488,0.00038631185,0.0026917665,0.00066120335,0.0033801815],"genre_scores_gemma":[0.7847637,0.001441843,0.198809,0.00025199133,0.00008053682,0.00056610955,0.011293323,0.00021517178,0.0025783174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989635,0.000271694,0.00011261699,0.000268677,0.00020599965,0.00017742738],"domain_scores_gemma":[0.9989202,0.00031393213,0.00030256013,0.00012029802,0.00023739864,0.00010560503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073273026,0.0007921046,0.0008583995,0.001293355,0.0003914913,0.0004821812,0.00039530074,0.00055901625,0.0013285942],"category_scores_gemma":[0.002513171,0.00034448007,0.000731265,0.0007634541,0.00033738033,0.00034856985,0.00035512683,0.00063828105,0.0009704993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011774921,0.000024985018,0.001808,0.00010431534,0.0000093166955,0.000094958916,0.00007370974,0.00018648079,0.9886812,0.00009448881,0.000106292566,0.008698518],"study_design_scores_gemma":[0.000020165331,0.0005659489,0.023232624,0.00012443677,0.00008677622,0.0017589488,0.00020621473,0.004735023,0.96147305,0.00019891009,0.0075627426,0.000035188656],"about_ca_topic_score_codex":0.0010175315,"about_ca_topic_score_gemma":0.0012830354,"teacher_disagreement_score":0.0013285942,"about_ca_system_score_codex":0.00034425405,"about_ca_system_score_gemma":0.0004923386,"threshold_uncertainty_score":0.0044445395},"labels":[],"label_agreement":null},{"id":"W1968398401","doi":"10.1128/jcm.40.6.2141-2146.2002","title":"Comparison of Human Immunodeficiency Virus (HIV)-Specific Infection-Enhancing and -Inhibiting Antibodies in AIDS Patients","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Antibody-dependent cell-mediated cytotoxicity; Antibody; Immunology; Virology; Immune system; Biology; Virus; Humoral immunity; Monoclonal antibody","score_opus":0.07114264417630052,"score_gpt":0.3899025984163539,"score_spread":0.3187599542400534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968398401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99909997,0.00027415398,0.000022632292,0.000017148224,0.0000033316792,0.000006422188,0.000040062154,0.000002733715,0.00053355744],"genre_scores_gemma":[0.9996897,0.00007787364,0.000029761437,0.000032958655,0.0000072583202,0.0000048613506,0.000080201164,9.162221e-7,0.000076565564],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99954635,0.00013176104,0.00006482521,0.00006349698,0.00006310266,0.00013035233],"domain_scores_gemma":[0.99873465,0.00047736758,0.0002551433,0.000041420146,0.00016582805,0.0003255791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047795274,0.00034458502,0.00048754702,0.0012772689,0.00063967623,0.00080259965,0.00020395503,0.00074957253,0.0016680427],"category_scores_gemma":[0.0033884435,0.00026885245,0.00028047024,0.0007534723,0.0003266624,0.0006143917,0.00032715235,0.0005144655,0.0002792442],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010947703,0.00012904326,0.99160635,0.000026383495,0.000046683403,0.0007118444,0.00024794092,0.000056611178,0.0011985159,0.000052109408,0.000107670785,0.0047220862],"study_design_scores_gemma":[0.000070885144,0.001207693,0.99335927,0.0000137675015,0.00006554235,0.003512657,0.00049298943,0.00021014796,0.0005836102,0.0000665512,0.00040827936,0.000008657009],"about_ca_topic_score_codex":0.001035841,"about_ca_topic_score_gemma":0.0010828663,"teacher_disagreement_score":0.0016680427,"about_ca_system_score_codex":0.00028916996,"about_ca_system_score_gemma":0.00019553369,"threshold_uncertainty_score":0.0055801272},"labels":[],"label_agreement":null},{"id":"W1968602861","doi":"10.1128/jcm.40.11.4172-4179.2002","title":"Single and Combination Antibiotic Susceptibilities of Planktonic, Adherent, and Biofilm-Grown <i>Pseudomonas aeruginosa</i> Isolates Cultured from Sputa of Adults with Cystic Fibrosis","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Pseudomonas aeruginosa; Microbiology; Cystic fibrosis; Biofilm; Antibiotics; Pseudomonadaceae; Biology; Pseudomonadales; Bacteria","score_opus":0.015567862602647461,"score_gpt":0.24591833968126878,"score_spread":0.23035047707862133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968602861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99941134,0.00031074687,0.00008939249,0.000011966547,0.0000026351952,0.000005676858,0.00007113308,0.0000021896847,0.00009492142],"genre_scores_gemma":[0.9986455,0.00027067433,0.0005514575,0.000023720086,0.000007291095,0.000016000893,0.0003141773,0.0000028012105,0.00016842059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994728,0.0001243432,0.0000818175,0.00010331108,0.00016795997,0.00004969084],"domain_scores_gemma":[0.9995925,0.000113505026,0.00008658624,0.00004490322,0.000093408715,0.00006908671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002578714,0.00022922285,0.0003727304,0.00024953092,0.00015907307,0.00023312963,0.00011248235,0.00032224442,0.00063686946],"category_scores_gemma":[0.001194615,0.00015731515,0.00022010611,0.00018138593,0.00015170156,0.00018799324,0.0002412013,0.00028095493,0.0001550035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006919505,0.00014397762,0.05547116,0.00010346038,0.00006597839,0.00025693822,0.00033800316,0.00016368178,0.93432856,0.000023170112,0.00007613892,0.00833707],"study_design_scores_gemma":[0.00008226116,0.008738791,0.68790805,0.00003403417,0.00030009728,0.0044219033,0.0008314317,0.0010946973,0.2951194,0.00006378815,0.0013734966,0.000031988857],"about_ca_topic_score_codex":0.0006357597,"about_ca_topic_score_gemma":0.0006818287,"teacher_disagreement_score":0.00063686946,"about_ca_system_score_codex":0.00010138136,"about_ca_system_score_gemma":0.00010739933,"threshold_uncertainty_score":0.002130568},"labels":[],"label_agreement":null},{"id":"W1970491055","doi":"10.1128/jcm.42.3.1129-1135.2004","title":"Population-Based Case Control Study of Seroprevalence of<i>Mycobacterium paratuberculosis</i>in Patients with Crohn's Disease and Ulcerative Colitis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":119,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Paratuberculosis; Medicine; Inflammatory bowel disease; Population; Ulcerative colitis; Serology; Crohn's disease; Immunology; Internal medicine; Disease; Seroprevalence; Gastroenterology; Tuberculosis; Antibody; Mycobacterium; Pathology; Environmental health","score_opus":0.019504243593014507,"score_gpt":0.335792378074537,"score_spread":0.3162881344815225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970491055","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99929154,0.00021643873,0.00007932163,0.000024762565,0.000006320433,0.000014350593,0.00009512135,0.000004112698,0.00026801325],"genre_scores_gemma":[0.9994622,0.00009010892,0.00013594095,0.00003841249,0.000011411095,0.000017366983,0.00015036475,0.0000017559029,0.00009249411],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989982,0.0003424485,0.000111679496,0.0002614168,0.00017297722,0.00011329786],"domain_scores_gemma":[0.99831736,0.00046159208,0.0005270974,0.00017132971,0.00020123986,0.00032138661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010531096,0.00036692573,0.0005950596,0.0012117542,0.0006743836,0.0007758555,0.00050378725,0.000743605,0.0012019211],"category_scores_gemma":[0.003464021,0.000646183,0.00037064106,0.0013671299,0.0005806753,0.00039595625,0.0003869001,0.0007180869,0.0002273839],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016031088,0.000079701174,0.9983992,0.000009761918,0.00006656463,0.00026931695,0.00010695068,0.000013991479,0.00029041452,0.000012196767,0.00006309591,0.00052849564],"study_design_scores_gemma":[0.000025368987,0.00018189324,0.9983625,0.0000054781826,0.00004687783,0.0009556171,0.00012348767,0.000093500064,0.000041657244,0.000010711889,0.00014906726,0.0000037561517],"about_ca_topic_score_codex":0.010761477,"about_ca_topic_score_gemma":0.008507039,"teacher_disagreement_score":0.010761477,"about_ca_system_score_codex":0.00051842624,"about_ca_system_score_gemma":0.00036847757,"threshold_uncertainty_score":0.02139765},"labels":[],"label_agreement":null},{"id":"W1970962873","doi":"10.1128/jcm.00483-15","title":"Characterization of Hepatitis C Virus Recombination in Cameroon by Use of Nonspecific Next-Generation Sequencing","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Biology; Sanger sequencing; Viral quasispecies; Genetics; Genotype; Recombination; Deep sequencing; DNA sequencing; Virology; Breakpoint; Genome; Gene","score_opus":0.3743977685992229,"score_gpt":0.4168586350939987,"score_spread":0.04246086649477576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970962873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98324466,0.0008285448,0.014368794,0.000050384664,0.000014682098,0.00006806722,0.0008533839,0.0000641793,0.0005073209],"genre_scores_gemma":[0.9658052,0.00041238245,0.031268157,0.00009144511,0.0000065004315,0.00007224224,0.0019633423,0.0000346118,0.00034617627],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996214,0.000105923435,0.000024374705,0.0001158933,0.000062574625,0.00006972799],"domain_scores_gemma":[0.99963164,0.00010420983,0.00011872729,0.00003934787,0.0000797797,0.000026354177],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089090434,0.00044515473,0.00028194103,0.00086427096,0.00044985008,0.00044593326,0.00023109316,0.0003584582,0.000500719],"category_scores_gemma":[0.0009805448,0.00020726916,0.0002561341,0.0007965538,0.00031164422,0.0002698347,0.00026831037,0.0003432794,0.0001546073],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002275852,0.000029160454,0.051357932,0.00011105293,0.000037285336,0.0004448336,0.00046708345,0.0013723011,0.93328506,0.00027879805,0.00013148403,0.01225728],"study_design_scores_gemma":[0.000058543337,0.00056514924,0.502935,0.00009365384,0.00021645293,0.003711801,0.0012695635,0.045054685,0.43087694,0.0006925684,0.014430019,0.00009558501],"about_ca_topic_score_codex":0.004076986,"about_ca_topic_score_gemma":0.005667927,"teacher_disagreement_score":0.004076986,"about_ca_system_score_codex":0.0003195903,"about_ca_system_score_gemma":0.0002996572,"threshold_uncertainty_score":0.00810653},"labels":[],"label_agreement":null},{"id":"W1971322784","doi":"10.1128/jcm.02473-08","title":"Utility of the Pneumoslide Test in Identification of <i>Streptococcus pneumoniae</i> in Blood Cultures and Its Relation to Capsular Serotype","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Streptococcus pneumoniae; Serotype; Microbiology; Blood culture; Streptococcaceae; Identification (biology); Biology; Pneumococcal infections; Virology; Medicine; Antibiotics","score_opus":0.02696831663618283,"score_gpt":0.3597595413834189,"score_spread":0.3327912247472361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971322784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927094,0.0025588176,0.0016186072,0.00018635925,0.00003328846,0.000017358843,0.00012453311,0.000026873982,0.0027247432],"genre_scores_gemma":[0.99868435,0.0003105152,0.0007504882,0.00003336446,0.000018003017,0.0000026556227,0.000069673064,0.0000034700715,0.00012746082],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99700075,0.0013577561,0.00025818212,0.0002774831,0.00089565,0.00021017238],"domain_scores_gemma":[0.99037,0.0069487314,0.00090859213,0.00030448334,0.001171388,0.00029675907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034513038,0.0004012136,0.0002721432,0.0010184175,0.00014918389,0.0007402188,0.00032530836,0.00054664107,0.0004832715],"category_scores_gemma":[0.014994424,0.00021569795,0.000279984,0.0005455974,0.0006552085,0.0006542469,0.00030036396,0.00055592804,0.00041975031],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034328462,0.00023180828,0.9328606,0.0001070048,0.00011390885,0.00064931996,0.00021945492,0.0015183965,0.022499247,0.00011807359,0.00041764145,0.037831634],"study_design_scores_gemma":[0.00009121245,0.007051056,0.87844753,0.00011673284,0.0002821089,0.009241474,0.0003440028,0.021016687,0.08134771,0.0002951844,0.0016982495,0.000068128895],"about_ca_topic_score_codex":0.0019731685,"about_ca_topic_score_gemma":0.0019778467,"teacher_disagreement_score":0.0034513038,"about_ca_system_score_codex":0.00033411547,"about_ca_system_score_gemma":0.00027230152,"threshold_uncertainty_score":0.018252432},"labels":[],"label_agreement":null},{"id":"W1971539569","doi":"10.1128/jcm.00667-14","title":"Paravertebral Mushroom: Identification of a Novel Species of Phellinus as a Human Pathogen in Chronic Granulomatous Disease","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"NIH Clinical Center; National Institutes of Health; University of Alberta","keywords":"Mushroom; Chronic granulomatous disease; Pathogen; Biology; Disease; Identification (biology); Microbiology; Human pathogen; Granulomatous disease; Pathology; Medicine; Bacteria; Immunology; Botany; Genetics","score_opus":0.04825410819122672,"score_gpt":0.38045467446235987,"score_spread":0.33220056627113315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971539569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99510574,0.0013695555,0.0013925472,0.0004277466,0.000053412798,0.000028314886,0.000118086085,0.000024640129,0.0014800943],"genre_scores_gemma":[0.99813807,0.0005223837,0.000876156,0.00008456339,0.000083307394,0.0000047268427,0.000060398143,0.0000042214247,0.00022623756],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997973,0.000025861844,0.000022605747,0.00004842358,0.000033091022,0.00007262928],"domain_scores_gemma":[0.9995065,0.00014356301,0.0001328241,0.000048283026,0.000040320898,0.00012853218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013993558,0.0005476051,0.00033128052,0.0006031015,0.00081004226,0.00075450446,0.0003467369,0.0013528082,0.0012448302],"category_scores_gemma":[0.0006248632,0.00020220559,0.00027155434,0.00036839326,0.00071657274,0.00070619996,0.00052871066,0.0007057058,0.0005805978],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004475459,0.00018235821,0.064928435,0.00023339412,0.0000146114435,0.846398,0.000876429,0.00015412748,0.07517335,0.00026670567,0.0004144845,0.010910629],"study_design_scores_gemma":[0.000025312984,0.0004182462,0.066514015,0.000053599444,0.000058433212,0.8969973,0.0011207776,0.0007071059,0.030989328,0.000245146,0.0028532797,0.000017505854],"about_ca_topic_score_codex":0.0011847465,"about_ca_topic_score_gemma":0.0009978551,"teacher_disagreement_score":0.0013528082,"about_ca_system_score_codex":0.00023866477,"about_ca_system_score_gemma":0.00020955295,"threshold_uncertainty_score":0.0041643977},"labels":[],"label_agreement":null},{"id":"W1972395484","doi":"10.1128/jcm.01255-07","title":"<i>Salmonella enterica</i> Serovar Senftenberg Human Clinical Isolates Lacking SPI-1","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Natural Science Foundation of China; Howard Hughes Medical Institute","keywords":"Salmonella enterica; Biology; Serotype; Microbiology; Virulence; Salmonella; Multilocus sequence typing; Pathogenicity island; Virology; Enteritis; Bacteria; Gene; Genotype; Genetics","score_opus":0.1422259704701392,"score_gpt":0.3776415344227955,"score_spread":0.2354155639526563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972395484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983342,0.00020169439,0.00021770483,0.000042376905,0.0000068766763,0.000021514807,0.00032119747,0.000009556848,0.00084483594],"genre_scores_gemma":[0.99677604,0.00020900521,0.0007672933,0.000081750266,0.00000968351,0.00001562928,0.0012584089,0.000005175919,0.00087707245],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999853,0.000021064976,0.00002088913,0.00004302512,0.000029008768,0.000033038184],"domain_scores_gemma":[0.9998529,0.000021718814,0.000041553572,0.000019048122,0.00004066491,0.00002401968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015389117,0.00038623568,0.00023659534,0.00027242771,0.0003311681,0.00020850025,0.0001239577,0.0001875993,0.0012897361],"category_scores_gemma":[0.00037278922,0.00014039763,0.00015230566,0.00019106387,0.00023776967,0.00009518908,0.00017349566,0.0001796434,0.0002551341],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013204829,0.00022369807,0.53355265,0.00034088388,0.000053770855,0.0045604664,0.0008143945,0.00023943621,0.4419207,0.0001832842,0.0017577329,0.015032501],"study_design_scores_gemma":[0.000056265468,0.000913964,0.9167092,0.0000629266,0.00007934242,0.013482579,0.001019428,0.00035430497,0.05909937,0.0000720138,0.0081346575,0.000016005575],"about_ca_topic_score_codex":0.004751737,"about_ca_topic_score_gemma":0.004672417,"teacher_disagreement_score":0.004751737,"about_ca_system_score_codex":0.00019858635,"about_ca_system_score_gemma":0.0002725036,"threshold_uncertainty_score":0.009448171},"labels":[],"label_agreement":null},{"id":"W1973334623","doi":"10.1128/jcm.42.10.4897-4900.2004","title":"<i>Gemella bergeriae</i> Endocarditis Diagnosed by Sequencing of rRNA Genes in Heart Valve Tissue","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infective Endocarditis Diagnosis and Management","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Endocarditis; Heart valve; Bicuspid aortic valve; 16S ribosomal RNA; Gene; Biology; Aortic valve; Pathology; Microbiology; Medicine; Genetics; Cardiology","score_opus":0.03233291653944523,"score_gpt":0.3627771384036037,"score_spread":0.33044422186415845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973334623","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99337995,0.0010321009,0.0014781996,0.00064354064,0.00008015251,0.000026765843,0.000046141937,0.00008152412,0.0032316947],"genre_scores_gemma":[0.99866486,0.00024438614,0.0006622786,0.000154583,0.000073333955,0.0000021557314,0.000027294785,0.0000070117935,0.00016419629],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996197,0.000057205976,0.000055007844,0.00007456613,0.000057747922,0.00013560924],"domain_scores_gemma":[0.99918836,0.0002541889,0.00023120358,0.000048762155,0.000056192814,0.0002212445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023814538,0.00092690927,0.00036071363,0.00074664276,0.00091596105,0.0007938282,0.00029237266,0.001400693,0.00076864153],"category_scores_gemma":[0.001925083,0.00040957038,0.00033643152,0.0002991451,0.0008467573,0.000513365,0.0007048401,0.0010125185,0.00039202478],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033236013,0.00006818504,0.09507306,0.00016145057,0.000017025544,0.8574192,0.0010603374,0.00019029749,0.03888856,0.00022447298,0.000659072,0.0059060156],"study_design_scores_gemma":[0.000018082585,0.00026575814,0.046250798,0.00004719885,0.000045411165,0.93378997,0.000638474,0.00047206975,0.016897755,0.00017266333,0.0013783138,0.000023398192],"about_ca_topic_score_codex":0.0017703562,"about_ca_topic_score_gemma":0.0010756663,"teacher_disagreement_score":0.0017703562,"about_ca_system_score_codex":0.0002879902,"about_ca_system_score_gemma":0.00021957727,"threshold_uncertainty_score":0.003520131},"labels":[],"label_agreement":null},{"id":"W1973527783","doi":"10.1128/jcm.01884-10","title":"Multilocus Sequence Typing Subtypes of Poultry Clostridium perfringens Isolates Demonstrate Disease Niche Partitioning","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Guelph","keywords":"Biology; Clostridium perfringens; Multilocus sequence typing; Microbiology; Genotype; Genetics; Population; Typing; Virology; Gene; Bacteria","score_opus":0.15502832654600013,"score_gpt":0.3952598572839606,"score_spread":0.2402315307379605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973527783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997148,0.00004949116,0.000085093605,0.0000037504224,7.000944e-7,0.0000034739103,0.000042704793,0.0000012200155,0.00009876728],"genre_scores_gemma":[0.9994935,0.000032080912,0.00023958905,0.000010040287,0.0000018638635,0.00000279798,0.00016229536,0.0000013890929,0.00005632588],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996364,0.000048900285,0.000043778076,0.00008237869,0.00009372166,0.000094920244],"domain_scores_gemma":[0.9993686,0.00015094013,0.00021513134,0.000034294826,0.00012038071,0.00011067318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027868673,0.0002030336,0.0001763968,0.000796281,0.00021951551,0.00028841966,0.0001453551,0.00025736395,0.00037667327],"category_scores_gemma":[0.00093114877,0.00010658497,0.00014288047,0.00042884512,0.00021044216,0.00015748851,0.00019532873,0.00016999863,0.00010461478],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045017683,0.000077861245,0.77225506,0.000041989813,0.00006789087,0.00047298498,0.00074912177,0.00025758723,0.21769397,0.00005368357,0.00007679299,0.0078029092],"study_design_scores_gemma":[0.000007771849,0.00019913878,0.9908154,0.000008322722,0.000025391793,0.0012953791,0.00043085826,0.00036673507,0.0065475274,0.000030163194,0.00026702002,0.0000061910837],"about_ca_topic_score_codex":0.0039966814,"about_ca_topic_score_gemma":0.005244421,"teacher_disagreement_score":0.0039966814,"about_ca_system_score_codex":0.00022591444,"about_ca_system_score_gemma":0.00013312836,"threshold_uncertainty_score":0.007946789},"labels":[],"label_agreement":null},{"id":"W1973831430","doi":"10.1128/jcm.05733-11","title":"Comparison of Molecular Typing Methods Useful for Detecting Clusters of Campylobacter jejuni and C. coli Isolates through Routine Surveillance","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care; University of Manitoba; Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Multilocus sequence typing; Typing; Campylobacter jejuni; Campylobacter; Biology; Population; Campylobacter coli; Molecular epidemiology; Genetics; Outbreak; Microbiology; Genotype; Computational biology; Virology; Gene; Medicine; Bacteria","score_opus":0.18033746682481058,"score_gpt":0.4285769939218248,"score_spread":0.24823952709701422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973831430","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913585,0.0035623645,0.0035434088,0.00008436544,0.00007014809,0.000097006654,0.0003041737,0.000057483638,0.00092253176],"genre_scores_gemma":[0.9767154,0.0019966676,0.019561868,0.00007062321,0.00004388701,0.00009776863,0.001114136,0.000022030386,0.0003776154],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9910294,0.0038603838,0.0010735132,0.0010624463,0.0025413826,0.00043280018],"domain_scores_gemma":[0.9842801,0.008543218,0.0023017253,0.001000247,0.0032623704,0.0006122591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00784736,0.0007944351,0.00086334825,0.0050633335,0.000316868,0.0014533452,0.00069809036,0.0009668791,0.00038632663],"category_scores_gemma":[0.017614974,0.00046284223,0.0006915184,0.0021553873,0.00046754527,0.0007671988,0.0005715474,0.0005615387,0.00031220418],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076378305,0.0014860161,0.51050574,0.0016169326,0.0014519553,0.00023820582,0.0013805773,0.0015532258,0.26782766,0.0002341398,0.0005826928,0.20548497],"study_design_scores_gemma":[0.00014023682,0.008845272,0.8850939,0.0002490801,0.000984696,0.0015245642,0.0006353696,0.005574984,0.093704894,0.00024115713,0.0029031474,0.00010255934],"about_ca_topic_score_codex":0.0007702917,"about_ca_topic_score_gemma":0.0013068838,"teacher_disagreement_score":0.00784736,"about_ca_system_score_codex":0.0004265802,"about_ca_system_score_gemma":0.0002983226,"threshold_uncertainty_score":0.041501284},"labels":[],"label_agreement":null},{"id":"W1974043297","doi":"10.1128/jcm.01601-14","title":"Multilocus Sequence Typing of Mycobacterium xenopi","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital; Public Health Ontario; Institut National de Santé Publique du Québec; Ministry of Health; Saskatchewan Disease Control Laboratory; Toronto Public Health","funders":"","keywords":"Multilocus sequence typing; Genotyping; Typing; Biology; Molecular epidemiology; Microbiology; Virology; Genotype; Genetics; Gene","score_opus":0.08883186274130983,"score_gpt":0.42260748774564666,"score_spread":0.33377562500433683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974043297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98073626,0.001821497,0.014267953,0.00027723133,0.00009012391,0.00023097567,0.0007937851,0.00005171952,0.0017304219],"genre_scores_gemma":[0.9719906,0.0009386095,0.02490552,0.000154476,0.00005861402,0.000067189634,0.0011904165,0.000022651984,0.00067194836],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99867755,0.00035513064,0.00017984028,0.00019980129,0.00046426622,0.00012325741],"domain_scores_gemma":[0.99869907,0.00040686043,0.00025414268,0.0000866441,0.0004233012,0.0001298263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011506611,0.0002777533,0.00032643735,0.0008214391,0.0001985076,0.00061899505,0.0003063383,0.0003212279,0.00037890274],"category_scores_gemma":[0.0024210485,0.000090352216,0.00021924608,0.000510867,0.00021180577,0.00031180502,0.00047605328,0.00040762965,0.00029478254],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005321507,0.00032152823,0.06819072,0.000255579,0.00005205204,0.0010181683,0.00048070494,0.0007683507,0.8866622,0.00041073762,0.00031368132,0.040994126],"study_design_scores_gemma":[0.00011158088,0.004201942,0.21036986,0.00016036356,0.00036547045,0.006349335,0.0010454685,0.0053522703,0.75708514,0.00048650525,0.014404348,0.000067762994],"about_ca_topic_score_codex":0.0013032338,"about_ca_topic_score_gemma":0.0012548933,"teacher_disagreement_score":0.0013032338,"about_ca_system_score_codex":0.00021502403,"about_ca_system_score_gemma":0.000375014,"threshold_uncertainty_score":0.006085396},"labels":[],"label_agreement":null},{"id":"W1974686143","doi":"10.1128/jcm.41.8.3851-3853.2003","title":"Evaluation of a Rapid PCR Assay for Diagnosis of Meningococcal Meningitis","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Meningitis; Meningococcal meningitis; Gram staining; Microbiology; Neisseria meningitidis; Cerebrospinal fluid; Polymerase chain reaction; Bacterial meningitis; Virology; Biology; Meningococcal Infections; Medicine; Bacteria; Meningococcal disease; Pathology; Antibiotics; Gene; Genetics; Pediatrics","score_opus":0.10250436172530833,"score_gpt":0.3945886344337652,"score_spread":0.2920842727084568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974686143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9726805,0.009869488,0.013021172,0.00028151076,0.00032153766,0.00029770235,0.00028058392,0.00026015186,0.002987447],"genre_scores_gemma":[0.9807962,0.0010362047,0.016823882,0.00014704745,0.00008959492,0.000109049644,0.00045123458,0.000030670813,0.00051608717],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99299544,0.002965813,0.0004326088,0.0007399811,0.002463839,0.00040225263],"domain_scores_gemma":[0.98535883,0.008829119,0.0015789678,0.00060451066,0.0029980436,0.0006305507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0061585084,0.001016505,0.0007799771,0.0026310233,0.0003011944,0.0008932235,0.00077176193,0.0010187445,0.0014467322],"category_scores_gemma":[0.018554209,0.0004939048,0.0003831632,0.0005389374,0.00051755307,0.000772899,0.0003701824,0.0007016008,0.00081308413],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012056273,0.0026123896,0.407891,0.0010367197,0.00050762435,0.0040268716,0.00071542076,0.0048382776,0.32496515,0.000923534,0.0019355696,0.23849112],"study_design_scores_gemma":[0.0030123536,0.058814324,0.47221687,0.0007807931,0.0011460121,0.071818665,0.0013732519,0.068539396,0.30190074,0.0019115016,0.018113365,0.0003726876],"about_ca_topic_score_codex":0.0005337366,"about_ca_topic_score_gemma":0.0006273716,"teacher_disagreement_score":0.0061585084,"about_ca_system_score_codex":0.0005940472,"about_ca_system_score_gemma":0.0004583273,"threshold_uncertainty_score":0.032569706},"labels":[],"label_agreement":null},{"id":"W1974878042","doi":"10.1128/jcm.01523-13","title":"Tuberculosis-Spoligo-Rifampin-Isoniazid Typing: an All-in-One Assay Technique for Surveillance and Control of Multidrug-Resistant Tuberculosis on Luminex Devices","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Fondation Mérieux; Centre National de la Recherche Scientifique; Inha University","keywords":"Tuberculosis; rpoB; Isoniazid; Genotyping; Mycobacterium tuberculosis; INHA; Drug resistance; Virology; Medicine; Typing; Mycobacterium tuberculosis complex; Biology; Microbiology; Genotype; Genetics; Pathology; Gene","score_opus":0.07645820581613137,"score_gpt":0.4105928400731815,"score_spread":0.3341346342570501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974878042","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15592225,0.007048379,0.81971335,0.0004936644,0.0004808911,0.00067710364,0.0022622964,0.006006165,0.0073959497],"genre_scores_gemma":[0.3071668,0.0035964274,0.67382306,0.0004383598,0.00018220757,0.000768898,0.0040745186,0.00032169663,0.009627986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959527,0.0013287144,0.00026602283,0.0007454934,0.001474504,0.00023249595],"domain_scores_gemma":[0.9989519,0.00026621594,0.00024541738,0.00031974897,0.00014400455,0.00007265983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003249954,0.00094012974,0.0011668836,0.0019991067,0.00038286543,0.001008041,0.0012963328,0.0008265864,0.0016211368],"category_scores_gemma":[0.001454565,0.0005690516,0.0007390703,0.00090997724,0.00043720458,0.0005374485,0.0009979098,0.0013327745,0.0025788709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062758854,0.00034273794,0.011169797,0.0005552164,0.00013726002,0.00020793115,0.00020385592,0.00039739252,0.83710206,0.00082077744,0.0024004653,0.14603494],"study_design_scores_gemma":[0.00006144544,0.001261443,0.0273571,0.00007226687,0.00016158346,0.0035940944,0.00004191414,0.008177562,0.92946446,0.0003062408,0.029428037,0.000073843104],"about_ca_topic_score_codex":0.0002102312,"about_ca_topic_score_gemma":0.00039804608,"teacher_disagreement_score":0.003249954,"about_ca_system_score_codex":0.00025291945,"about_ca_system_score_gemma":0.00039585508,"threshold_uncertainty_score":0.017187655},"labels":[],"label_agreement":null},{"id":"W1975169815","doi":"10.1128/jcm.41.11.5085-5093.2003","title":"Evaluation and Field Validation of PCR Tests for Detection of <i>Actinobacillus pleuropneumoniae</i> in Subclinically Infected Pigs","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre de Développement du Porc du Québec; Université de Montréal","funders":"","keywords":"Actinobacillus pleuropneumoniae; Tonsil; Biology; Microbiology; Polymerase chain reaction; Microbiological culture; Herd; Virology; Serotype; Bacteria; Immunology; Gene","score_opus":0.08031093718554703,"score_gpt":0.41013851102534665,"score_spread":0.3298275738397996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975169815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9802642,0.0011007991,0.017130757,0.00007513544,0.000059892514,0.000314537,0.00032355083,0.00012775716,0.000603289],"genre_scores_gemma":[0.9389757,0.001013296,0.056828532,0.00013292034,0.00005745565,0.0004317722,0.0017322536,0.000036169673,0.00079177006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9942918,0.0021951362,0.00048636287,0.0013054196,0.0013850057,0.00033636802],"domain_scores_gemma":[0.99399817,0.0024866508,0.00091612356,0.00034957976,0.0019805382,0.00026896826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004553478,0.0014829484,0.0008174766,0.00077520555,0.0003123051,0.00068782165,0.0010346087,0.0012134312,0.0004266796],"category_scores_gemma":[0.004996331,0.0007483542,0.00065865915,0.000522128,0.0009594648,0.00060865516,0.00050278293,0.00062117225,0.00044561754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010350816,0.00086065097,0.028860604,0.00040396303,0.00006358567,0.000111585156,0.00034778516,0.00063172216,0.9525963,0.000050400624,0.000092450726,0.014945785],"study_design_scores_gemma":[0.0001805716,0.021080913,0.061478976,0.00007199801,0.00034809142,0.0015563974,0.00050476595,0.004956543,0.9083159,0.000079204154,0.0013596952,0.0000668887],"about_ca_topic_score_codex":0.0011893967,"about_ca_topic_score_gemma":0.0016537241,"teacher_disagreement_score":0.004553478,"about_ca_system_score_codex":0.0004371204,"about_ca_system_score_gemma":0.00046925622,"threshold_uncertainty_score":0.024081409},"labels":[],"label_agreement":null},{"id":"W1975353996","doi":"10.1128/jcm.02347-13","title":"Bacterial Vaginosis Diagnosed by Analysis of First-Void-Urine Specimens","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Bacterial vaginosis; Gardnerella vaginalis; Urine; Prevotella; Microbiology; Population; Biology; Medicine; Bacteria; Internal medicine","score_opus":0.03605301492293144,"score_gpt":0.359160810268657,"score_spread":0.32310779534572553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975353996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956417,0.0026314007,0.0004912682,0.000031790674,0.000023736,0.000029797717,0.00022267808,0.000014229877,0.00091340585],"genre_scores_gemma":[0.998271,0.0005607838,0.000735356,0.000026418793,0.00001447295,0.000008958426,0.00020536917,0.0000021885799,0.00017539189],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99929035,0.00025295824,0.00007107795,0.0001071493,0.00018382633,0.000094574985],"domain_scores_gemma":[0.99901485,0.0003574146,0.00030775252,0.000052343003,0.0001452758,0.00012230662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007041956,0.00040095934,0.0005348965,0.0013432488,0.00028782332,0.0004465262,0.00019992994,0.0003439939,0.0008477136],"category_scores_gemma":[0.003124272,0.00019354525,0.0002490779,0.0005653541,0.00028862432,0.00026091503,0.00033288533,0.0002534027,0.0002396841],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000250545,0.00004296007,0.98597276,0.00007268851,0.000029287867,0.0004204223,0.000087051114,0.0000373066,0.0037420443,0.000013927128,0.000069618516,0.009261385],"study_design_scores_gemma":[0.000007969301,0.0004986393,0.9888759,0.000079601894,0.000042510255,0.0048594694,0.00037616678,0.0005285529,0.0040213163,0.00004221533,0.0006568297,0.000010719019],"about_ca_topic_score_codex":0.0016999106,"about_ca_topic_score_gemma":0.0014616464,"teacher_disagreement_score":0.0016999106,"about_ca_system_score_codex":0.00018087402,"about_ca_system_score_gemma":0.000202467,"threshold_uncertainty_score":0.0037242174},"labels":[],"label_agreement":null},{"id":"W1975841786","doi":"10.1128/jcm.01367-13","title":"Hepatitis C Virus Late Relapse after Sustained Virologic Response from Interferon and Ribavirin Treatment as Confirmed by RNA Sequencing","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; Public Health Agency of Canada; McGill University","funders":"","keywords":"Viremia; Ribavirin; Hepatitis C virus; Virology; Virus; Hepacivirus; Interferon; Hepatitis C; Medicine; Immunology; Biology","score_opus":0.04266312662728493,"score_gpt":0.3740973727304965,"score_spread":0.33143424610321154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975841786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914123,0.0014390487,0.002213777,0.0009890479,0.0001084934,0.000056171684,0.00007573431,0.00015722265,0.0035482273],"genre_scores_gemma":[0.9980422,0.000257887,0.00040489607,0.0004661399,0.00019060205,0.000012628127,0.00007424603,0.000022058253,0.00052937947],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.999416,0.00012485182,0.000068884525,0.00010425355,0.000081109625,0.00020494343],"domain_scores_gemma":[0.99720675,0.0008192982,0.0007993596,0.00036962732,0.00018970978,0.00061528606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005588261,0.0011714089,0.0010755786,0.0010994787,0.0011361181,0.00092159427,0.00081459095,0.0026401756,0.0012306888],"category_scores_gemma":[0.004083865,0.00047340128,0.0008469469,0.00050380453,0.0009658235,0.00063345284,0.00074253936,0.0019992134,0.0009726922],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035505104,0.00013627246,0.05492221,0.00005619744,0.00002304366,0.93448955,0.00029959177,0.00008947848,0.0038320017,0.00021338108,0.0004268124,0.005156355],"study_design_scores_gemma":[0.00002166261,0.00030906912,0.011302018,0.000021356766,0.00001572348,0.9862903,0.000086800894,0.0002850952,0.0011457385,0.00014203186,0.00036520467,0.000014947052],"about_ca_topic_score_codex":0.00068938354,"about_ca_topic_score_gemma":0.0007855087,"teacher_disagreement_score":0.0026401756,"about_ca_system_score_codex":0.0004459269,"about_ca_system_score_gemma":0.00036472772,"threshold_uncertainty_score":0.0041170716},"labels":[],"label_agreement":null},{"id":"W1976439058","doi":"10.1128/jcm.01726-14","title":"Whole-Genome Sequencing of the Mycobacterium tuberculosis Manila Sublineage Results in Less Clustering and Better Resolution than Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat (MIRU-VNTR) Typing and Spoligotyping","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Mycobacterium tuberculosis; Variable number tandem repeat; Biology; Typing; Tuberculosis; Genome; Virology; Whole genome sequencing; Tandem repeat; Genetics; Medicine; Genotype; Gene","score_opus":0.05152512956520269,"score_gpt":0.34269101636539434,"score_spread":0.2911658868001916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976439058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948921,0.00025411585,0.0028252455,0.00002991917,0.000006860493,0.000031599317,0.0009201944,0.000040598672,0.000999365],"genre_scores_gemma":[0.98628545,0.0003538068,0.00859405,0.00006804767,0.00001295636,0.000058528884,0.0036503002,0.000040180727,0.00093668996],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997844,0.000039863862,0.00001988607,0.00007946603,0.000037786536,0.00003864626],"domain_scores_gemma":[0.9996474,0.000068481095,0.00010781008,0.00008322508,0.00005317183,0.000039973092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026751545,0.0004895299,0.0004002477,0.0007205461,0.00041992942,0.0004396558,0.00017718723,0.00024774397,0.0011205033],"category_scores_gemma":[0.0006536383,0.00018140893,0.00048134953,0.0007480119,0.00012433545,0.00023017115,0.00033496384,0.00030109796,0.0004280248],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038511874,0.00008241589,0.18639725,0.00012267758,0.00016020557,0.0003608899,0.0008522987,0.0005974756,0.7768055,0.00012564707,0.0002298547,0.03388064],"study_design_scores_gemma":[0.000010242537,0.00044757902,0.928312,0.0000313882,0.00020750538,0.0019139076,0.0006271085,0.0016779356,0.05954666,0.00015513122,0.0070503703,0.000020140238],"about_ca_topic_score_codex":0.0022742394,"about_ca_topic_score_gemma":0.004835916,"teacher_disagreement_score":0.0022742394,"about_ca_system_score_codex":0.00013470037,"about_ca_system_score_gemma":0.00016930854,"threshold_uncertainty_score":0.004521966},"labels":[],"label_agreement":null},{"id":"W1976830889","doi":"10.1128/jcm.42.12.5444-5452.2004","title":"Heterogeneity among Virulence and Antimicrobial Resistance Gene Profiles of Extraintestinal <i>Escherichia coli</i> Isolates of Animal and Human Origin","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Biology; Tetracycline; Integron; Virulence; Microbiology; Antibiotic resistance; Ampicillin; Genotype; Escherichia coli; Antimicrobial; Trimethoprim; Gene; Antibiotics; Genetics","score_opus":0.024656904391267134,"score_gpt":0.32455272164506677,"score_spread":0.29989581725379966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976830889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99959534,0.00011056292,0.00009146786,0.000009919501,9.65197e-7,0.000004634665,0.00007228337,0.0000019361992,0.00011293912],"genre_scores_gemma":[0.9988858,0.00012805485,0.00023605309,0.00003265503,0.0000067044707,0.0000063668354,0.0005510481,0.0000030957447,0.00015025424],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999718,0.00006267934,0.000036653153,0.000081976614,0.00004410072,0.000056473822],"domain_scores_gemma":[0.99952555,0.00011902575,0.00014451578,0.00004561642,0.000082124985,0.00008315694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021627314,0.00019141143,0.00021321724,0.0004189025,0.00013609407,0.00037745616,0.00011239722,0.0003135707,0.00068511383],"category_scores_gemma":[0.0008815167,0.00014491958,0.00016106284,0.000239894,0.00023537356,0.0001510559,0.00021869512,0.00018553525,0.00022218088],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010179832,0.00016419767,0.771083,0.00009888236,0.00009104537,0.0019394755,0.0008029604,0.00012798257,0.2139463,0.000057974376,0.00022030449,0.010449878],"study_design_scores_gemma":[0.000013250282,0.0003908088,0.9885046,0.000012760341,0.00003164389,0.004688044,0.00035216287,0.00014690796,0.005271704,0.000021315529,0.00055878656,0.000007864208],"about_ca_topic_score_codex":0.0011057041,"about_ca_topic_score_gemma":0.0010317443,"teacher_disagreement_score":0.0011057041,"about_ca_system_score_codex":0.00012746907,"about_ca_system_score_gemma":0.00009617612,"threshold_uncertainty_score":0.0022919774},"labels":[],"label_agreement":null},{"id":"W1977003943","doi":"10.1128/jcm.03047-13","title":"Phenotypic and Genotypic Characterization of Canadian Clinical Isolates of Vibrio parahaemolyticus Collected from 2000 to 2009","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; Health Sciences Centre; BC Centre for Disease Control; Health Canada; University of Manitoba; Public Health Agency of Canada","funders":"Health Canada; Canadian Food Inspection Agency","keywords":"Vibrio parahaemolyticus; Biology; Microbiology; Hemolysin; Pulsed-field gel electrophoresis; Ribotyping; Serotype; Multilocus sequence typing; Genotype; Virulence; Typing; Population; Virology; Genetics; Gene; Bacteria; Medicine","score_opus":0.027191210775935733,"score_gpt":0.32392829723666294,"score_spread":0.2967370864607272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977003943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99558085,0.00037768472,0.00022064216,0.00009349725,0.0000102249,0.00005235745,0.0024487278,0.000009115696,0.0012068587],"genre_scores_gemma":[0.99331117,0.0005432873,0.0008527719,0.0001240899,0.000008900292,0.000018700819,0.0040107258,0.000009247359,0.0011211714],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992409,0.00002501761,0.000041270443,0.00011557044,0.00043122453,0.00014616105],"domain_scores_gemma":[0.9986268,0.000054273263,0.00013428778,0.00003410232,0.0009641999,0.00018633899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028504524,0.00037067026,0.00039921785,0.0012860011,0.001341892,0.0007885401,0.0005640341,0.00034721007,0.0005292696],"category_scores_gemma":[0.0014737451,0.0002768259,0.00029376918,0.0024035813,0.0004702922,0.00016242125,0.00035914316,0.00042585089,0.00014852459],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039552734,0.00009132241,0.9374726,0.00015029004,0.00007976175,0.000544585,0.002691659,0.0003817959,0.03864805,0.000089938054,0.0013154196,0.018139068],"study_design_scores_gemma":[0.0000069840094,0.000063590705,0.9944971,0.000015647163,0.000024850238,0.00040565396,0.00091825443,0.0002354604,0.0019114254,0.000010099648,0.0018994187,0.000011538836],"about_ca_topic_score_codex":0.9305509,"about_ca_topic_score_gemma":0.95579714,"teacher_disagreement_score":0.06944913,"about_ca_system_score_codex":0.0059630526,"about_ca_system_score_gemma":0.007517505,"threshold_uncertainty_score":0.13971621},"labels":[],"label_agreement":null},{"id":"W1977087963","doi":"10.1128/jcm.00104-06","title":"Enhanced Detection and Typing of Human Papillomavirus (HPV) DNA in Anogenital Samples with PGMY Primers and the Linear Array HPV Genotyping Test","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":189,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; Institut National de Santé Publique du Québec; McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Hôpital Notre-Dame","funders":"","keywords":"Genotyping; Typing; Human papillomavirus; Papillomaviridae; Biology; Virology; Genotype; Medicine; Genetics; Cervical cancer; Cancer; Gene","score_opus":0.04223933870046274,"score_gpt":0.36788807814011093,"score_spread":0.32564873943964817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977087963","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92821443,0.004211309,0.063708656,0.00010981749,0.000046239362,0.00027907136,0.0005596108,0.00038070974,0.002490173],"genre_scores_gemma":[0.8878357,0.0009680519,0.10866884,0.00015219372,0.000035447047,0.00035924366,0.0006659503,0.000029595996,0.0012849947],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9910706,0.0051559657,0.00040209654,0.0012033229,0.0019157926,0.00025218364],"domain_scores_gemma":[0.9949515,0.0028528364,0.0008566353,0.00043337455,0.00078404724,0.000121702564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005197671,0.00047472076,0.0005892234,0.0013581236,0.00015416584,0.0006296244,0.0005258003,0.00064430514,0.0008571265],"category_scores_gemma":[0.009518565,0.0005072859,0.0003428818,0.0010681256,0.00034114052,0.00046845153,0.0006880665,0.00049100525,0.00045602606],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032756694,0.00028818852,0.59615195,0.00061093416,0.00040926732,0.00048161228,0.0010541438,0.0024158142,0.26476872,0.00044787076,0.0010314288,0.12906438],"study_design_scores_gemma":[0.00016220855,0.003605826,0.78751737,0.00021447151,0.00036584743,0.00823361,0.0004058553,0.027121402,0.16544576,0.00047015364,0.0063467836,0.000110778674],"about_ca_topic_score_codex":0.0006546414,"about_ca_topic_score_gemma":0.0009520761,"teacher_disagreement_score":0.005197671,"about_ca_system_score_codex":0.00025155587,"about_ca_system_score_gemma":0.00021585761,"threshold_uncertainty_score":0.027488232},"labels":[],"label_agreement":null},{"id":"W1977646614","doi":"10.1128/jcm.06597-11","title":"Detection of Toxigenic Clostridium difficile: Comparison of the Cell Culture Neutralization, Xpert C. difficile, Xpert C. difficile/Epi, and Illumigene C. difficile Assays","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Food and Drug Administration; Consortium canadien en neurodégénérescence associée au vieillissement","keywords":"C difficile; Clostridium difficile; Microbiology; Clostridium Infections; Neutralization; Clostridiaceae; Virology; Medicine; Biology; Antibiotics; Toxin","score_opus":0.04751584395778501,"score_gpt":0.3705454070760762,"score_spread":0.3230295631182912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977646614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97727317,0.010739352,0.009135594,0.00009572034,0.00007705941,0.00008657069,0.00045931395,0.000070537695,0.0020627824],"genre_scores_gemma":[0.9775013,0.0025058452,0.017692469,0.00011123857,0.000034387744,0.000055631037,0.0011504242,0.000024276089,0.0009244231],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99496424,0.0014269168,0.00043700248,0.00061363966,0.002348852,0.00020940711],"domain_scores_gemma":[0.9931438,0.002700593,0.0011048492,0.0004987165,0.0021816243,0.00037045171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0056887735,0.00064504,0.0005575901,0.0020390993,0.00018286915,0.0008700009,0.00073942106,0.0006234299,0.00043964214],"category_scores_gemma":[0.007032177,0.0004121391,0.0003854568,0.0010817241,0.0005623815,0.00049180037,0.0005982293,0.00043311037,0.00020742751],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034609328,0.00025188917,0.8189923,0.0006044761,0.00026600613,0.00023459496,0.00083672104,0.00078246434,0.11717888,0.00020563774,0.00035408727,0.05683207],"study_design_scores_gemma":[0.00015883127,0.0058452305,0.83306897,0.00021088433,0.00042725485,0.0039767832,0.0007065846,0.008839714,0.141441,0.00015930549,0.0050831437,0.00008226623],"about_ca_topic_score_codex":0.0019514461,"about_ca_topic_score_gemma":0.0031883444,"teacher_disagreement_score":0.0056887735,"about_ca_system_score_codex":0.00036197205,"about_ca_system_score_gemma":0.00035263255,"threshold_uncertainty_score":0.030085444},"labels":[],"label_agreement":null},{"id":"W1977912042","doi":"10.1128/jcm.42.11.5364-5367.2004","title":"Polymorphisms of the Fimbria <i>fim3</i> Gene of <i>Bordetella pertussis</i> Strains Isolated in Canada","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Manitoba Health; Ministry of Health and Long Term Care; Dalhousie University; Health Canada","funders":"","keywords":"Fimbria; Bordetella pertussis; Microbiology; Biology; Pertactin; Gene; Antigen; Epitope; Virology; Bordetella; Antibody; Pertussis toxin; Virulence; Genetics; Bacteria","score_opus":0.01980878792537869,"score_gpt":0.2755244896073096,"score_spread":0.25571570168193086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977912042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976841,0.00013196055,0.00013912833,0.00006100837,0.000003922979,0.00002164737,0.0007939731,0.000004457374,0.0011597738],"genre_scores_gemma":[0.99730396,0.00016595634,0.00038412414,0.00005348277,0.000002368855,0.000007758366,0.00077057176,0.0000047044527,0.0013070294],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996823,0.000014206525,0.000011723966,0.00006080536,0.00012309146,0.00010789223],"domain_scores_gemma":[0.99971217,0.000020949965,0.000059364094,0.0000090953,0.00012037032,0.00007799461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014338491,0.00037555618,0.00023434444,0.00078264147,0.0016561727,0.00047854308,0.0003461744,0.0002760597,0.0019030627],"category_scores_gemma":[0.00046137514,0.00019185962,0.00027127485,0.0011312999,0.00059482653,0.00010386035,0.0002079158,0.00043485968,0.000267788],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012489369,0.00020347544,0.8179212,0.00014707129,0.00018613515,0.0014954803,0.003468639,0.00078313675,0.14217551,0.0009880922,0.002024597,0.029357787],"study_design_scores_gemma":[0.000025573285,0.0001172734,0.99141484,0.000018525976,0.000040390078,0.0006072085,0.00066808733,0.00022899784,0.003938719,0.000040410465,0.002882893,0.000017016951],"about_ca_topic_score_codex":0.94015837,"about_ca_topic_score_gemma":0.9602979,"teacher_disagreement_score":0.059841633,"about_ca_system_score_codex":0.007214974,"about_ca_system_score_gemma":0.0061310045,"threshold_uncertainty_score":0.12038803},"labels":[],"label_agreement":null},{"id":"W1977919961","doi":"10.1128/jcm.06595-11","title":"Comparison of Three Assays for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae in SurePath Pap Samples and the Role of Pre- and Postcytology Testing","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hamilton Health Sciences; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Medicine; Cytology; Chlamydiaceae; Chlamydiales; Gynecology; Virology; Microbiology; Biology; Pathology","score_opus":0.09290761752359877,"score_gpt":0.4039851655062671,"score_spread":0.31107754798266835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977919961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891072,0.0018010607,0.005394653,0.00012829888,0.000078752964,0.00014170047,0.00051633595,0.00012058117,0.0027114265],"genre_scores_gemma":[0.9870345,0.00045753224,0.010333664,0.00023006846,0.000027750824,0.00008854302,0.0011319631,0.000024038334,0.00067188713],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.980973,0.0060568517,0.0010642637,0.0023010154,0.00862926,0.00097560725],"domain_scores_gemma":[0.97584313,0.015969504,0.0021747043,0.0016287845,0.0037956645,0.00058823306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008572722,0.0012078978,0.0006784646,0.0021680705,0.00039995916,0.0013934107,0.0014520634,0.0014910991,0.00087433605],"category_scores_gemma":[0.016523201,0.0010079425,0.0009511477,0.0014896727,0.0009823205,0.00088451366,0.0012375473,0.0008544245,0.00041619482],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007548466,0.0005880027,0.83505803,0.00062072003,0.0006285013,0.00030017132,0.001038792,0.0016336087,0.0938236,0.00025951356,0.0005966257,0.057904117],"study_design_scores_gemma":[0.0001916575,0.011707155,0.87800455,0.00013844784,0.00039485807,0.0029332014,0.00048700094,0.0139344875,0.08977028,0.00015448596,0.0021826439,0.000101187485],"about_ca_topic_score_codex":0.0047080843,"about_ca_topic_score_gemma":0.007901237,"teacher_disagreement_score":0.008572722,"about_ca_system_score_codex":0.0009094068,"about_ca_system_score_gemma":0.0006714829,"threshold_uncertainty_score":0.04533744},"labels":[],"label_agreement":null},{"id":"W1978339759","doi":"10.1128/jcm.43.7.3522-3525.2005","title":"Isolation of an Atypical Strain of<i>Actinobacillus pleuropneumoniae</i>Serotype 1 with a Truncated Lipopolysaccharide Outer Core and No O-Antigen","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre de Développement du Porc du Québec; Institute for Biological Sciences; Eli Lilly (Canada); Université de Montréal","funders":"","keywords":"Serotype; Actinobacillus pleuropneumoniae; Microbiology; Biology; Antigen; Pleuropneumonia; Virulence; Serology; Polyclonal antibodies; Monoclonal antibody; Virology; Rhodococcus equi; Antibody; Gene; Immunology","score_opus":0.048876978748205985,"score_gpt":0.3555915377050992,"score_spread":0.30671455895689326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978339759","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979322,0.00018620084,0.0006590244,0.0001641702,0.000050785537,0.00005583011,0.00022857709,0.00001592046,0.0007073439],"genre_scores_gemma":[0.99498475,0.0002685454,0.0029296326,0.00016166343,0.0000841515,0.000020223246,0.0008559828,0.0000123718455,0.0006827267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997018,0.000042782383,0.000035339537,0.00008872556,0.00006274166,0.00006854532],"domain_scores_gemma":[0.9996426,0.00010862312,0.00007688067,0.000032500437,0.00005035221,0.000088941415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016713576,0.0006555851,0.00035573627,0.00036015033,0.00040898068,0.00038127755,0.0003057361,0.00066822645,0.00049409457],"category_scores_gemma":[0.0007777376,0.00021796963,0.00036668812,0.00027230047,0.00020747892,0.00025407548,0.00024452407,0.0005200385,0.00030768028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000607072,0.00048716427,0.041350458,0.00020497195,0.000041263498,0.020562712,0.0005422601,0.00018975996,0.92717075,0.00019822693,0.0007705505,0.007874819],"study_design_scores_gemma":[0.000118083626,0.00568369,0.4687252,0.00014586555,0.00021801725,0.20703259,0.0019444881,0.0018818221,0.30028462,0.00032203872,0.013561424,0.00008217858],"about_ca_topic_score_codex":0.0018852566,"about_ca_topic_score_gemma":0.001457789,"teacher_disagreement_score":0.0018852566,"about_ca_system_score_codex":0.00019458165,"about_ca_system_score_gemma":0.0001984512,"threshold_uncertainty_score":0.003748536},"labels":[],"label_agreement":null},{"id":"W1979218536","doi":"10.1128/jcm.00538-14","title":"Emergence of G186D Mutation in the Presence of R292K Mutation in an Immunocompromised Child Infected with Influenza A/H3N2 Virus, Treated with Oseltamivir","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Oseltamivir; Virology; Mutation; Virus; Biology; Influenza A virus; Orthomyxoviridae; Medicine; Genetics; Coronavirus disease 2019 (COVID-19); Gene","score_opus":0.06477554014901209,"score_gpt":0.4186203292163445,"score_spread":0.3538447890673324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979218536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99937063,0.000056695426,0.00005520227,0.00003533302,0.0000069724492,0.00000684602,0.00012019455,0.0000034706948,0.0003446886],"genre_scores_gemma":[0.99951863,0.000048721977,0.00009142997,0.000036947884,0.0000054125617,0.0000027817753,0.00006926949,0.0000024766903,0.0002243131],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.999915,0.000009951786,0.0000072299285,0.000023032566,0.000017199867,0.000027531165],"domain_scores_gemma":[0.9998436,0.000043372835,0.000036085614,0.0000072305015,0.000015613043,0.00005400612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006845922,0.0002729685,0.00024231114,0.00036122726,0.000531402,0.00021714343,0.00018319077,0.0006488851,0.0012595989],"category_scores_gemma":[0.00046300216,0.00016039403,0.0003347107,0.0002549313,0.00042024118,0.00013293985,0.0001590309,0.0005073886,0.00024359791],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00306555,0.0004886897,0.46033671,0.00013225448,0.00007873662,0.29206645,0.0028371,0.0005913289,0.23272143,0.00023610075,0.00084417674,0.006601572],"study_design_scores_gemma":[0.00007704029,0.0019843427,0.79146653,0.000034211145,0.000111743946,0.1604855,0.0016170616,0.0010174805,0.041370716,0.00009848755,0.0017022847,0.000034624914],"about_ca_topic_score_codex":0.0045456244,"about_ca_topic_score_gemma":0.0049465843,"teacher_disagreement_score":0.0045456244,"about_ca_system_score_codex":0.00022441724,"about_ca_system_score_gemma":0.00015135942,"threshold_uncertainty_score":0.009038329},"labels":[],"label_agreement":null},{"id":"W1979529558","doi":"10.1128/jcm.42.4.1829-1831.2004","title":"Detection of <i>Atopobium vaginae</i> in Postmenopausal Women by Cultivation-Independent Methods Warrants Further Investigation","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"Bacterial vaginosis; Biology; Asymptomatic; Gynecology; Microbiology; Medicine; Internal medicine","score_opus":0.03721468945351563,"score_gpt":0.3976208638386419,"score_spread":0.3604061743851263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979529558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99652326,0.0012722971,0.0010194475,0.00020613632,0.000014438328,0.000041599855,0.00020477788,0.000007983874,0.000710005],"genre_scores_gemma":[0.99525464,0.0011879571,0.0027427753,0.000116585405,0.000040534254,0.000042233576,0.000293431,0.0000054159286,0.00031643332],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99967194,0.0000825193,0.000036192316,0.00005609533,0.000098442106,0.000054746884],"domain_scores_gemma":[0.9989171,0.00037786464,0.0002840059,0.00008608,0.0002591428,0.00007583461],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006963564,0.0002638952,0.0003101359,0.00032903848,0.00027314632,0.0004953067,0.00029572556,0.00038253836,0.00070177304],"category_scores_gemma":[0.00160117,0.00010340183,0.00020918305,0.00041548806,0.00026946323,0.0002656461,0.0002307858,0.0002370146,0.00030367787],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039875935,0.00008458365,0.5623986,0.00026511346,0.000032509914,0.00044830304,0.00090300286,0.00004543059,0.414821,0.000068691166,0.00011900414,0.020414986],"study_design_scores_gemma":[0.000019687313,0.0015719646,0.92110175,0.00015388697,0.000106757165,0.0028021268,0.0025092936,0.00041126672,0.06736549,0.00015067396,0.0037887616,0.000018253777],"about_ca_topic_score_codex":0.0025708522,"about_ca_topic_score_gemma":0.0027564857,"teacher_disagreement_score":0.0025708522,"about_ca_system_score_codex":0.00008901334,"about_ca_system_score_gemma":0.00021900792,"threshold_uncertainty_score":0.0051118135},"labels":[],"label_agreement":null},{"id":"W1979927360","doi":"10.1128/jcm.39.9.3414-3416.2001","title":"Hemorrhagic Fever with Renal Syndrome: Diagnostic Problems with a Known Disease","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Disease; Medicine; Hantavirus; Infectious disease (medical specialty); Virology; Fever of unknown origin; Immunology; Intensive care medicine; Pathology; Virus; Internal medicine","score_opus":0.03264513423005074,"score_gpt":0.3329669304730869,"score_spread":0.3003217962430362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979927360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8613976,0.03009785,0.028599957,0.024855144,0.0021192618,0.00042466825,0.00024948048,0.0005957646,0.051660318],"genre_scores_gemma":[0.97557664,0.006773167,0.008809229,0.0042245807,0.003360064,0.000094553856,0.00013083532,0.000038246624,0.000992699],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9979594,0.0004763631,0.00030991156,0.00029013658,0.0005329602,0.0004313098],"domain_scores_gemma":[0.9955646,0.0018648924,0.00065075466,0.0004569455,0.00052113424,0.0009417309],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002773787,0.0013604875,0.0011534463,0.0025771346,0.0022965414,0.0017626181,0.0022349749,0.0050013065,0.0026934966],"category_scores_gemma":[0.017276812,0.0007166875,0.0005144881,0.001291532,0.0035550606,0.0049327887,0.002320592,0.0027530564,0.0015489904],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021661291,0.00024399496,0.18668546,0.00038366916,0.000021253722,0.7710826,0.0015350337,0.00023285761,0.004618075,0.002478325,0.0027004383,0.029801669],"study_design_scores_gemma":[0.000029742538,0.000120824654,0.014948923,0.0001461149,0.000022435885,0.97698826,0.0011742113,0.0006884608,0.0011386898,0.0018556683,0.002855635,0.0000310206],"about_ca_topic_score_codex":0.00160568,"about_ca_topic_score_gemma":0.0012813135,"teacher_disagreement_score":0.0050013065,"about_ca_system_score_codex":0.0007981737,"about_ca_system_score_gemma":0.0010826621,"threshold_uncertainty_score":0.014669359},"labels":[],"label_agreement":null},{"id":"W1980763616","doi":"10.1128/jcm.00612-07","title":"Nucleotide Sequence Diversity of the <i>bexA</i> Gene in Serotypeable <i>Haemophilus influenzae</i> Strains Recovered from Invasive Disease Patients in Canada","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Health Canada","keywords":"Haemophilus influenzae; Biology; Gene; Haemophilus; Genetics; Nucleic acid sequence; Sequence (biology); Microbiology; Virology; Pasteurellaceae; Genetic diversity; DNA sequencing; Bacteria; Medicine","score_opus":0.036910148729358404,"score_gpt":0.2794842869242088,"score_spread":0.24257413819485038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980763616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844295,0.00016860447,0.00007510424,0.00003926699,0.000002252739,0.000007001456,0.0006053159,0.0000019701654,0.00065754034],"genre_scores_gemma":[0.9985682,0.00018038739,0.00019662584,0.000034406497,0.0000019406893,0.000003709447,0.00061580184,0.0000017467097,0.00039721958],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997656,0.000016504837,0.00001736775,0.000045273682,0.00008754138,0.000067664536],"domain_scores_gemma":[0.99957496,0.000055749966,0.00006061681,0.000013166073,0.00018437333,0.00011118504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012536669,0.0001240504,0.00022110881,0.0010172722,0.0006997259,0.0005407669,0.0002287275,0.00022855615,0.00065945846],"category_scores_gemma":[0.0005894068,0.00012305206,0.00018004568,0.0011442652,0.00033743645,0.00007246231,0.00014149713,0.00029524634,0.00012751394],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005904723,0.000057645768,0.8936549,0.00008299938,0.00009484588,0.0010574668,0.0020770072,0.000712165,0.08231028,0.00021077303,0.0005566313,0.018594705],"study_design_scores_gemma":[0.00000726283,0.000064642336,0.9952429,0.0000137589495,0.000025720916,0.0005412168,0.00072914024,0.00018252408,0.0020846357,0.000018662002,0.0010822428,0.000007168782],"about_ca_topic_score_codex":0.70153093,"about_ca_topic_score_gemma":0.77585804,"teacher_disagreement_score":0.29846907,"about_ca_system_score_codex":0.0023619654,"about_ca_system_score_gemma":0.0021780739,"threshold_uncertainty_score":0.6004536},"labels":[],"label_agreement":null},{"id":"W1980912311","doi":"10.1128/jcm.02282-14","title":"Correction for Chen et al., Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Clinical microbiology; Typing; Whole genome sequencing; Genome; Biology; Computational biology; Sequence (biology); Microbiology; Virology; Genetics; Gene","score_opus":0.24546574845942637,"score_gpt":0.456011323812396,"score_spread":0.21054557535296964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980912311","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019999017,0.0016654052,0.0016424925,0.036027588,0.95081586,0.000115589784,0.0065908767,0.0009226003,0.0020196694],"genre_scores_gemma":[0.018255336,0.011860234,0.026313908,0.12342344,0.5811173,0.0024167942,0.0336901,0.008546449,0.19437644],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99121046,0.001976086,0.0018971148,0.0012704448,0.0029420156,0.00070401345],"domain_scores_gemma":[0.9277926,0.02005769,0.0031451879,0.004221291,0.042176336,0.0026068941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008356067,0.0029663425,0.0026188777,0.0073505775,0.0025798082,0.0040703756,0.004468654,0.00466901,0.15002464],"category_scores_gemma":[0.11329551,0.0015572698,0.003505552,0.003918576,0.001972914,0.0026455794,0.0022955243,0.009434181,0.056099534],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003976947,0.0000043559394,0.000056319503,0.00024991023,0.000014360671,0.00004603938,0.00001798319,0.00001693098,0.000040989376,0.00020055128,0.996014,0.0032989753],"study_design_scores_gemma":[0.0001342653,0.00003876015,0.0022979693,0.0011098216,0.000091086666,0.00057115883,0.00010675049,0.0002231997,0.00032662193,0.0013654606,0.99368334,0.00005160827],"about_ca_topic_score_codex":0.015207761,"about_ca_topic_score_gemma":0.017582607,"teacher_disagreement_score":0.15002464,"about_ca_system_score_codex":0.0034831779,"about_ca_system_score_gemma":0.006965639,"threshold_uncertainty_score":0.50188243},"labels":[],"label_agreement":null},{"id":"W1981794439","doi":"10.1128/jcm.01545-07","title":"<i>Gardnerella vaginalis</i>Bacteremia in a Previously Healthy Man: Case Report and Characterization of the Isolate","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Bacteremia; Gardnerella vaginalis; Vaginitis; Urinary system; Medicine; Microbiology; Internal medicine; Biology; Bacterial vaginosis; Gynecology; Antibiotics","score_opus":0.039937493752364404,"score_gpt":0.3869834923829892,"score_spread":0.3470459986306248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981794439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9842502,0.0021846737,0.0016429852,0.003564857,0.0004836574,0.00013593133,0.00023200849,0.00011397493,0.007391787],"genre_scores_gemma":[0.99544805,0.000725694,0.00075796986,0.0012099277,0.00071512756,0.000015368934,0.00010515108,0.000025121622,0.0009976651],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995074,0.0000608254,0.000055660246,0.00015905562,0.00005950916,0.00015758503],"domain_scores_gemma":[0.9988661,0.00029076153,0.0002369192,0.000071880175,0.00007130061,0.00046299372],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027280668,0.0014597247,0.0008473898,0.0015092173,0.0017316946,0.0010779466,0.00083238515,0.0039677615,0.0018015134],"category_scores_gemma":[0.0022364021,0.001037185,0.0009811925,0.0007336935,0.0013941117,0.0012851328,0.000831928,0.0028450205,0.0009497088],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060407026,0.00011848177,0.012246987,0.00004524204,0.000014247666,0.9823366,0.000585607,0.00007795013,0.002130405,0.00014757631,0.0007459034,0.0014906208],"study_design_scores_gemma":[0.000020464391,0.00035827587,0.023057811,0.00004104231,0.000034890934,0.9728405,0.0005190963,0.0002752279,0.0012608997,0.00012624692,0.0014343273,0.000031227093],"about_ca_topic_score_codex":0.003692702,"about_ca_topic_score_gemma":0.0034897248,"teacher_disagreement_score":0.0039677615,"about_ca_system_score_codex":0.00064721535,"about_ca_system_score_gemma":0.0004928929,"threshold_uncertainty_score":0.007342458},"labels":[],"label_agreement":null},{"id":"W1981981071","doi":"10.1128/jcm.02460-05","title":"Multicenter Comparison of Nucleic Acid Extraction Methods for Detection of Severe Acute Respiratory Syndrome Coronavirus RNA in Stool Specimens","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Toronto Public Health; Mount Sinai Hospital; Wildlife Habitat Canada (Canada); University of Toronto; SickKids Foundation; St. Joseph’s Healthcare Hamilton; Hospital for Sick Children; Ministry of Health and Long Term Care; St. Joseph's Hospital","funders":"Canadian Institutes of Health Research; Centers for Disease Control and Prevention; Ontario Ministry of Health and Long-Term Care","keywords":"Serial dilution; RNA extraction; RNA; Coronavirus; Coronaviridae; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Extraction (chemistry); Biology; Nucleic acid; Acute gastroenteritis; Virus; Chromatography; Coronavirus disease 2019 (COVID-19); Medicine; Chemistry; Pathology; Gene; Biochemistry","score_opus":0.14250235457702037,"score_gpt":0.5018206250914226,"score_spread":0.3593182705144022,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981981071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907454,0.0010155604,0.006727369,0.00004588586,0.000059953323,0.0007012239,0.0002822893,0.00007929954,0.0003428569],"genre_scores_gemma":[0.9554623,0.0011788063,0.038597975,0.00018192938,0.00009333591,0.0013657229,0.0022620596,0.000079042155,0.00077901594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98363566,0.008694094,0.00199953,0.002390093,0.0029491298,0.00033151096],"domain_scores_gemma":[0.9881202,0.003987001,0.00232038,0.0015837868,0.0036138431,0.0003747297],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0136323795,0.0012951925,0.0010034078,0.001446168,0.00059498666,0.0010632621,0.0008273192,0.0009126859,0.00048159764],"category_scores_gemma":[0.015620918,0.0008302024,0.00087972445,0.00093286525,0.00081579806,0.000538561,0.00079929864,0.00052497373,0.0002973798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022612106,0.005365198,0.1317958,0.0014335638,0.0017545153,0.0002543558,0.0017505368,0.002297668,0.75661075,0.00017871393,0.0004965855,0.0754503],"study_design_scores_gemma":[0.0016867277,0.13196455,0.32200012,0.00020725797,0.0020955622,0.0014764172,0.000758992,0.0070021288,0.5280925,0.00017548823,0.004350935,0.00018939294],"about_ca_topic_score_codex":0.0006200171,"about_ca_topic_score_gemma":0.0008921097,"teacher_disagreement_score":0.0136323795,"about_ca_system_score_codex":0.00044724296,"about_ca_system_score_gemma":0.00041200733,"threshold_uncertainty_score":0.07209575},"labels":[],"label_agreement":null},{"id":"W1982029578","doi":"10.1128/jcm.02278-12","title":"Gamma Interferon Release Assay for Monitoring of Treatment Response for Active Tuberculosis: an Explosion in the Spaghetti Factory","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Heart Institute; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Tuberculosis; Interferon γ; Interferon gamma; Medicine; Active tuberculosis; Interferon; Gamma interferon; Interferon gamma release assay; QuantiFERON; Immunology; Mycobacterium tuberculosis; Virology; Cytokine; Pathology; Latent tuberculosis","score_opus":0.19309956412699114,"score_gpt":0.48277551749203457,"score_spread":0.2896759533650434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982029578","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22011805,0.5771927,0.06705749,0.10811825,0.0039956034,0.00035994538,0.0008193636,0.00084431015,0.021494307],"genre_scores_gemma":[0.7082349,0.13267855,0.09209636,0.049755227,0.0112274885,0.00050527457,0.00063961506,0.0006090202,0.004253579],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9785785,0.01317316,0.0015700749,0.0014781907,0.0047450224,0.0004551209],"domain_scores_gemma":[0.9336262,0.04751374,0.004313197,0.005576648,0.0072346143,0.0017355442],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.05525142,0.00086299045,0.0023576198,0.0060114367,0.000412684,0.002971297,0.0014553276,0.0019672194,0.0013354275],"category_scores_gemma":[0.046490178,0.0005678356,0.00075459364,0.0034202521,0.00482297,0.0041443184,0.0017929683,0.0031944958,0.0008738143],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001986447,0.00035350383,0.18562715,0.0004492769,0.00016499594,0.0004149078,0.00049756514,0.0004853702,0.0034576836,0.005371188,0.010361073,0.79083085],"study_design_scores_gemma":[0.0009787008,0.009096628,0.424029,0.0038055482,0.0008779826,0.019180525,0.0023856733,0.016091093,0.028280655,0.06320117,0.43134156,0.0007314377],"about_ca_topic_score_codex":0.00082048774,"about_ca_topic_score_gemma":0.00071836,"teacher_disagreement_score":0.05525142,"about_ca_system_score_codex":0.0014366364,"about_ca_system_score_gemma":0.0014217854,"threshold_uncertainty_score":0.29220092},"labels":[],"label_agreement":null},{"id":"W1983129658","doi":"10.1128/jcm.39.10.3530-3536.2001","title":"Nonisotopic Detection of Human Papillomavirus DNA in Clinical Specimens Using a Consensus PCR and a Generic Probe Mix in an Enzyme-Linked Immunosorbent Assay Format","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Notre-Dame; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Centre Hospitalier de l’Université de Montréal; McGill University","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Dig; Digoxigenin; Amplicon; Molecular biology; Genotyping; Biology; Polymerase chain reaction; Streptavidin; Hybridization probe; Primer (cosmetics); Human papillomavirus; Southern blot; Biotinylation; DNA; Virology; Chemistry; Genotype; Gene; Biotin; Genetics; Medicine; In situ hybridization; Messenger RNA","score_opus":0.15951126372968535,"score_gpt":0.45462562920919874,"score_spread":0.2951143654795134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983129658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76585424,0.006205064,0.22057034,0.00029796717,0.00023948822,0.0016396536,0.00090289116,0.0007005806,0.0035897582],"genre_scores_gemma":[0.5620544,0.0018564374,0.42915133,0.00043187817,0.00008069743,0.0017306432,0.0023714188,0.0000822346,0.0022409272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.990854,0.0028607028,0.0008400534,0.0021834844,0.0028361215,0.0004256047],"domain_scores_gemma":[0.995133,0.0019734614,0.00053341035,0.0008556027,0.0012868957,0.00021764073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008608236,0.0010074443,0.0013519364,0.0014084746,0.00025415834,0.00055265194,0.0013408248,0.0012612321,0.001722404],"category_scores_gemma":[0.0054986565,0.00065179914,0.00050412567,0.0008394891,0.00060558255,0.0005838046,0.00067675585,0.00083674863,0.0007828231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010973332,0.00041265195,0.018494977,0.0007448697,0.00014172796,0.00023858767,0.00019093858,0.00051251636,0.9411185,0.00025714526,0.00043409513,0.03635675],"study_design_scores_gemma":[0.00046276397,0.010346499,0.050407402,0.000109084416,0.00047854814,0.009406301,0.00023494853,0.012121398,0.9083697,0.00044578328,0.007506051,0.00011150441],"about_ca_topic_score_codex":0.00036844437,"about_ca_topic_score_gemma":0.0007555629,"teacher_disagreement_score":0.008608236,"about_ca_system_score_codex":0.00040473972,"about_ca_system_score_gemma":0.00060364575,"threshold_uncertainty_score":0.045525253},"labels":[],"label_agreement":null},{"id":"W1984051780","doi":"10.1128/jcm.00131-14","title":"Epidemiology of Candida kefyr in Patients with Hematologic Malignancies","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; U.S. Public Health Service; Astellas Foundation for Research on Metabolic Disorders","keywords":"Epidemiology; Incidence (geometry); Amphotericin B; Medicine; Fluconazole; Internal medicine; Retrospective cohort study; Odds ratio; Biology; Antifungal; Dermatology","score_opus":0.043734027133149715,"score_gpt":0.36685447372901464,"score_spread":0.3231204465958649,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984051780","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988921,0.0005285174,0.000043013213,0.000051621766,0.0000037710693,0.0000062559657,0.00012704532,0.000003825234,0.00034373655],"genre_scores_gemma":[0.99956685,0.00016712776,0.00006822846,0.000030735966,0.000010903079,0.0000033824997,0.00011115212,8.1051263e-7,0.000040800172],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995466,0.00010424192,0.000059155853,0.00008259595,0.00011694566,0.00009059779],"domain_scores_gemma":[0.9988846,0.000116704374,0.0006481175,0.00004496009,0.000107153406,0.00019842997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028609505,0.00017892268,0.0002509101,0.0009460904,0.00037341437,0.00048346043,0.00023884485,0.0003731103,0.0008208288],"category_scores_gemma":[0.0012439158,0.00018602044,0.00021629396,0.0010943266,0.0002444434,0.00033048025,0.00035837258,0.0003696978,0.00010110516],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015188732,0.000005670756,0.99910176,0.0000033268147,0.00000671029,0.00009089994,0.00001704856,0.000013011362,0.00012189978,0.000003892394,0.00003207314,0.0005886807],"study_design_scores_gemma":[9.375097e-7,0.000030746287,0.9989864,0.0000046679024,0.000004755395,0.0007148579,0.000079772915,0.000050901086,0.00003422585,0.000003277315,0.00008806586,0.000001437506],"about_ca_topic_score_codex":0.009422647,"about_ca_topic_score_gemma":0.009178811,"teacher_disagreement_score":0.009422647,"about_ca_system_score_codex":0.00046832606,"about_ca_system_score_gemma":0.00037665063,"threshold_uncertainty_score":0.018735647},"labels":[],"label_agreement":null},{"id":"W1984565945","doi":"10.1128/jcm.02563-05","title":"Molecular Analysis of <i>Clostridium difficile</i> PCR Ribotype 027 Isolates from Eastern and Western Canada","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Fraser Health; Calgary Laboratory Services; Alberta Health Services; Hôpital Maisonneuve-Rosemont; University of Calgary","funders":"Public Health Agency","keywords":"Clostridium difficile; Biology; Polymerase chain reaction; Microbiology; Ribotyping; Frameshift mutation; Outbreak; Molecular epidemiology; Strain (injury); Gene; Virology; Genetics; Genotype; Mutation; Antibiotics","score_opus":0.02350042876883334,"score_gpt":0.3228055835084259,"score_spread":0.29930515473959257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984565945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955226,0.00033984886,0.00030224078,0.000058885576,0.0000073106867,0.000043901327,0.0015893988,0.000012809993,0.002122886],"genre_scores_gemma":[0.98849314,0.0007424841,0.0016242194,0.00020520095,0.000006077382,0.00003297568,0.0058227032,0.000019556981,0.003053473],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994677,0.000019210062,0.000025515128,0.00007508315,0.00020036996,0.00021217688],"domain_scores_gemma":[0.9991831,0.000042035866,0.00009926475,0.000021527885,0.0005223261,0.00013174783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025472892,0.0003512204,0.00025126632,0.0012634661,0.0010298681,0.00094843423,0.00038745432,0.00026260837,0.0007782996],"category_scores_gemma":[0.00076585985,0.00021768594,0.00031101084,0.0018920051,0.00033923629,0.00009199503,0.00031715454,0.000270692,0.00031878572],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006965165,0.00013554738,0.69563335,0.00019369989,0.00012960457,0.0016687756,0.0030989326,0.00076560135,0.27158943,0.00032058643,0.001366413,0.024401551],"study_design_scores_gemma":[0.000015241305,0.000105575,0.9832972,0.000026034833,0.000050947823,0.000531507,0.0016778841,0.00058506714,0.008946177,0.000017502563,0.0047312886,0.000015572357],"about_ca_topic_score_codex":0.9333804,"about_ca_topic_score_gemma":0.93196577,"teacher_disagreement_score":0.066619575,"about_ca_system_score_codex":0.0048771226,"about_ca_system_score_gemma":0.0062984847,"threshold_uncertainty_score":0.13402379},"labels":[],"label_agreement":null},{"id":"W1984608017","doi":"10.1128/jcm.43.10.5341-5343.2005","title":"Use of a Selective Enrichment Broth To Recover <i>Clostridium difficile</i> from Stool Swabs Stored under Different Conditions","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Guelph","funders":"","keywords":"Clostridium difficile; Microbiology; Clostridiaceae; Clostridium; C difficile; Clostridium Infections; Biology; Bacteria; Virology; Antibiotics; Toxin","score_opus":0.08406322240912378,"score_gpt":0.3887224609900847,"score_spread":0.3046592385809609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984608017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99625885,0.001012352,0.0019924422,0.00006688296,0.000044581626,0.00004845339,0.00017004288,0.0000412621,0.00036518826],"genre_scores_gemma":[0.99146783,0.0008458083,0.006374376,0.000060868493,0.000025868074,0.000036344332,0.00062543276,0.00001853377,0.0005448128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997892,0.00004660051,0.000029002545,0.00004013202,0.000052081257,0.000043065105],"domain_scores_gemma":[0.99961746,0.000083321705,0.00008455452,0.000040294504,0.00010032885,0.00007391129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002521021,0.00034794817,0.000348694,0.00032683933,0.00027060296,0.00039063924,0.00025621228,0.00025889275,0.00072391145],"category_scores_gemma":[0.00060635014,0.00011443164,0.00029213275,0.0002823125,0.00019632824,0.00020267635,0.00025721945,0.00027212995,0.00030907267],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018507136,0.0001515118,0.004223723,0.00011798659,0.000027096185,0.00011804545,0.00006987534,0.00004112495,0.9865985,0.00001907464,0.00006207627,0.0067203627],"study_design_scores_gemma":[0.00006246717,0.005726964,0.029732578,0.000035047127,0.00019556892,0.0013158765,0.0001769332,0.00028567572,0.9608297,0.000015169597,0.00159754,0.000026587113],"about_ca_topic_score_codex":0.0010138989,"about_ca_topic_score_gemma":0.001265338,"teacher_disagreement_score":0.0010138989,"about_ca_system_score_codex":0.0001479527,"about_ca_system_score_gemma":0.0003390056,"threshold_uncertainty_score":0.002421677},"labels":[],"label_agreement":null},{"id":"W1984667497","doi":"10.1128/jcm.43.7.3537-3539.2005","title":"Bacteremia Caused by <i>Janibacter melonis</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Medicine; Microbiology; Biology; Antibiotics","score_opus":0.03550537246996506,"score_gpt":0.28953496750965557,"score_spread":0.2540295950396905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984667497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886906,0.002720559,0.0017053422,0.001128749,0.00017049737,0.000047190613,0.000050760023,0.00013919387,0.0053470125],"genre_scores_gemma":[0.9981066,0.0006011868,0.00047530018,0.0002828784,0.00019232124,0.0000062226927,0.000024238887,0.000007986301,0.00030325682],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997048,0.000039456645,0.000035759695,0.00006240498,0.00003863832,0.000118958575],"domain_scores_gemma":[0.9992011,0.00020262117,0.00026580915,0.00006442054,0.00003818204,0.00022770798],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024216888,0.0014128723,0.0005526999,0.0005725908,0.0015312984,0.0010668173,0.0004553567,0.001958066,0.0009004673],"category_scores_gemma":[0.0013736828,0.00062837696,0.00046020607,0.00045072485,0.0011930491,0.00080421544,0.00077882747,0.0013907148,0.0005548844],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015578029,0.000067553585,0.019203585,0.00007983484,0.00001874622,0.9679855,0.000474633,0.000081694016,0.008190465,0.00016618092,0.0005619987,0.0030139673],"study_design_scores_gemma":[0.000026875183,0.00025171562,0.014653781,0.000022249009,0.000043572498,0.9799141,0.00030148146,0.00023789426,0.0033079528,0.00010289821,0.0011195815,0.000017744649],"about_ca_topic_score_codex":0.0013285537,"about_ca_topic_score_gemma":0.0010738806,"teacher_disagreement_score":0.001958066,"about_ca_system_score_codex":0.00047367276,"about_ca_system_score_gemma":0.00026917848,"threshold_uncertainty_score":0.0034368038},"labels":[],"label_agreement":null},{"id":"W1984708271","doi":"10.1128/jcm.42.12.5620-5623.2004","title":"Prevalence and Mechanisms of Erythromycin Resistance in Group A and Group B <i>Streptococcus</i> : Implications for Reporting Susceptibility Results","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Erythromycin; Clindamycin; Microbiology; Streptococcus; Biology; Streptococcus pyogenes; Population; Antibiotics; Streptococcaceae; Streptococcus agalactiae; Bacteria; Medicine; Staphylococcus aureus; Genetics","score_opus":0.051728711348729965,"score_gpt":0.3812930498870349,"score_spread":0.3295643385383049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984708271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885024,0.0050332327,0.0021173258,0.0013394532,0.0000422602,0.000081490056,0.0005814131,0.00005238173,0.002249973],"genre_scores_gemma":[0.99642664,0.0011832016,0.001756706,0.0001989559,0.00004726388,0.000059292586,0.0002280125,0.000009081876,0.00009073812],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98353934,0.0079666935,0.0037787159,0.0016762138,0.0023090877,0.0007299426],"domain_scores_gemma":[0.97113276,0.01302726,0.010516427,0.0017217373,0.0028274618,0.00077430863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01629689,0.00041888154,0.00048400313,0.002949504,0.0003820815,0.0017022217,0.0014071534,0.0010362925,0.0008639095],"category_scores_gemma":[0.03790563,0.00033901096,0.00034711143,0.0020388851,0.0012337692,0.0017482619,0.0008982795,0.0005596488,0.00023424278],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009440135,0.000038509683,0.9855576,0.00014594293,0.000021334978,0.00018951624,0.00057016005,0.0000638537,0.0016828723,0.0001258637,0.00022654906,0.0112833725],"study_design_scores_gemma":[0.000008206285,0.00024896135,0.9923137,0.0002448343,0.000050527018,0.0024402903,0.0012411445,0.00056781864,0.0019522443,0.00020146281,0.00071070396,0.00002012653],"about_ca_topic_score_codex":0.0056721964,"about_ca_topic_score_gemma":0.0023566047,"teacher_disagreement_score":0.01629689,"about_ca_system_score_codex":0.0008600021,"about_ca_system_score_gemma":0.00055872,"threshold_uncertainty_score":0.08618724},"labels":[],"label_agreement":null},{"id":"W1984770923","doi":"10.1128/jcm.00519-10","title":"Inducibly Cefoxitin-Resistant <i>Macrococcus</i> -Like Organism Falsely Identified as Methicillin-Resistant <i>Staphylococcus aureus</i> on CHROMagar with Oxacillin","year":2010,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cefoxitin; Staphylococcus aureus; Microbiology; Micrococcaceae; Methicillin-resistant Staphylococcus aureus; Medicine; Meticillin; Antibiotics; Virology; Biology; Antibacterial agent; Bacteria","score_opus":0.03606671063070514,"score_gpt":0.2896576797456906,"score_spread":0.25359096911498547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984770923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8987654,0.0008842166,0.0020429874,0.037373576,0.0017501414,0.00019787709,0.00032458198,0.0003102744,0.058350958],"genre_scores_gemma":[0.9687385,0.00058945105,0.0012485916,0.015347069,0.0009538572,0.000031357966,0.00015352484,0.00006315843,0.012874507],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9993611,0.0001455324,0.00005277111,0.0001106867,0.00016196002,0.00016802065],"domain_scores_gemma":[0.9984786,0.0007255579,0.00013916689,0.00017555406,0.00029032186,0.00019089044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043984316,0.0007903859,0.0004164572,0.0002970092,0.0006354722,0.0007433061,0.0005966082,0.0027772803,0.002562255],"category_scores_gemma":[0.002830358,0.000282365,0.00038754853,0.00024438376,0.00096559024,0.0004096413,0.00019964858,0.0022476227,0.001464391],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002411752,0.0007914552,0.06660112,0.00025220323,0.00006396143,0.7983592,0.001342531,0.000274623,0.082529694,0.0018611246,0.027764935,0.017747404],"study_design_scores_gemma":[0.00035888987,0.0027396865,0.09620741,0.00020917178,0.00017632483,0.763102,0.0017928961,0.004249461,0.06864718,0.0014314624,0.060999412,0.000086165935],"about_ca_topic_score_codex":0.0037894084,"about_ca_topic_score_gemma":0.004432191,"teacher_disagreement_score":0.0037894084,"about_ca_system_score_codex":0.0010213762,"about_ca_system_score_gemma":0.00032313846,"threshold_uncertainty_score":0.008571625},"labels":[],"label_agreement":null},{"id":"W1984829726","doi":"10.1128/jcm.42.7.3169-3175.2004","title":"Multiplex PCR Assay for Detection of <i>Streptococcus suis</i> Species and Serotypes 2 and 1/2 in Tonsils of Live and Dead Pigs","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Serotype; Biology; Multiplex polymerase chain reaction; Microbiology; Multiplex; Tonsil; Polymerase chain reaction; Virology; 16S ribosomal RNA; Gene; Molecular biology; Virulence; Genetics; Immunology","score_opus":0.05158656909055084,"score_gpt":0.3647562436207371,"score_spread":0.3131696745301863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984829726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9049669,0.0022434215,0.08730643,0.00008242103,0.00024731908,0.00041189571,0.0013256792,0.0006506483,0.00276518],"genre_scores_gemma":[0.8034176,0.0017405406,0.1834753,0.00016088535,0.00014121126,0.001037607,0.0030822954,0.000054667584,0.006889857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911803,0.0001511245,0.00007265196,0.0002963189,0.00024342425,0.0001184143],"domain_scores_gemma":[0.9994369,0.00015698384,0.00014152707,0.000039622937,0.00012894778,0.000095997086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074942893,0.0009109483,0.0006712894,0.0012987235,0.00023495205,0.00055752636,0.00036882746,0.0005766994,0.0012601796],"category_scores_gemma":[0.0008951874,0.00047169902,0.0003911233,0.0004889246,0.00022663547,0.0004275387,0.0003225263,0.0006019171,0.0005073219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002747318,0.00010544203,0.0038360113,0.000063734275,0.000017865164,0.00009380462,0.00008105859,0.00010354529,0.9873411,0.00006829048,0.00009927662,0.007915075],"study_design_scores_gemma":[0.00006754529,0.003807864,0.03590703,0.00006887113,0.00015595186,0.002663325,0.00022366742,0.007996715,0.94360036,0.00020539289,0.005239972,0.0000634404],"about_ca_topic_score_codex":0.00022629905,"about_ca_topic_score_gemma":0.00040568862,"teacher_disagreement_score":0.0012987235,"about_ca_system_score_codex":0.00025302824,"about_ca_system_score_gemma":0.00019165064,"threshold_uncertainty_score":0.004215777},"labels":[],"label_agreement":null},{"id":"W1984903934","doi":"10.1128/jcm.01949-08","title":"Detection and Isolation of <i>Campylobacter</i> Species Other than <i>C. jejuni</i> from Children with Crohn's Disease","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Campylobacter; Campylobacter jejuni; Microbiology; Biology; Isolation (microbiology); Crohn's disease; Antibody; Bacteria; Campylobacter coli; Disease; Immunology; Internal medicine; Medicine","score_opus":0.037078004901414496,"score_gpt":0.2621064950532518,"score_spread":0.2250284901518373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984903934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991308,0.0002983274,0.000051263363,0.000024432265,0.000004167596,0.000007838268,0.00018472603,0.0000036445738,0.00029486133],"genre_scores_gemma":[0.9985661,0.00040039854,0.00034795603,0.000067771434,0.000009541563,0.00001003123,0.0004242325,0.000004061616,0.00016992788],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994628,0.00006308572,0.00006801743,0.000109809065,0.00014049442,0.00015585552],"domain_scores_gemma":[0.99902356,0.00018882564,0.00034265616,0.000037117177,0.00019997194,0.00020785426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024932355,0.00042759557,0.00043801533,0.0010902092,0.0006189991,0.00056743954,0.00020253108,0.0005628196,0.0009882932],"category_scores_gemma":[0.001448939,0.00039246134,0.00026570258,0.0007626042,0.0005650621,0.00033981894,0.00030928873,0.00047110653,0.00028542132],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016049991,0.000051931966,0.9801579,0.000070028334,0.000018285275,0.00062409654,0.00048162646,0.000017450644,0.016008912,0.000017020604,0.00015220614,0.0022400382],"study_design_scores_gemma":[0.000009603369,0.00038754323,0.98876804,0.000027620972,0.00003114716,0.004682579,0.00083547476,0.000040939594,0.004378506,0.000011852179,0.00081993744,0.000006722992],"about_ca_topic_score_codex":0.010647034,"about_ca_topic_score_gemma":0.007975162,"teacher_disagreement_score":0.010647034,"about_ca_system_score_codex":0.000437061,"about_ca_system_score_gemma":0.0004434431,"threshold_uncertainty_score":0.02117014},"labels":[],"label_agreement":null},{"id":"W1985135296","doi":"10.1128/jcm.00186-13","title":"Absence of Mycobacterium intracellulare and Presence of Mycobacterium chimaera in Household Water and Biofilm Samples of Patients in the United States with Mycobacterium avium Complex Respiratory Disease","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Mycobacterium; Nontuberculous mycobacteria; Mycobacterium avium-intracellulare infection; Biology; Mycobacterium avium complex; Microbiology; Respiratory disease; Lung; Bacteria; Medicine; Genetics; Internal medicine","score_opus":0.05271806618525031,"score_gpt":0.31341228559065143,"score_spread":0.2606942194054011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985135296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995127,0.000168807,0.000043558117,0.000027841406,0.0000026825564,0.0000052224323,0.00008960102,0.0000019381819,0.00014756602],"genre_scores_gemma":[0.9996001,0.000087141096,0.00010348874,0.000040741612,0.000005119647,0.000004316898,0.0001243626,0.0000010074389,0.00003371914],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994598,0.00017009732,0.00008891667,0.00009823208,0.00011126133,0.000071744784],"domain_scores_gemma":[0.99911267,0.00024754013,0.00030755525,0.000043941687,0.0001613688,0.00012697875],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038842382,0.00030570838,0.00029839083,0.0009676988,0.00042710427,0.00044353778,0.00019278974,0.00047919172,0.00095547334],"category_scores_gemma":[0.0025813375,0.0003270778,0.0001410589,0.0006040544,0.00041263702,0.00033947668,0.0003587597,0.00023051111,0.0001740207],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009297008,0.000031511612,0.9947665,0.000029601233,0.000022137023,0.00040135888,0.0003034165,0.00002204725,0.0026060578,0.000009913299,0.00009953594,0.0016149739],"study_design_scores_gemma":[0.000009912655,0.00016533892,0.9961201,0.000021041926,0.000030331566,0.0016429828,0.0010206733,0.00013378345,0.00060723413,0.000016344917,0.00022730675,0.0000049731807],"about_ca_topic_score_codex":0.0066505503,"about_ca_topic_score_gemma":0.007762626,"teacher_disagreement_score":0.0066505503,"about_ca_system_score_codex":0.00024288453,"about_ca_system_score_gemma":0.00026197618,"threshold_uncertainty_score":0.013223648},"labels":[],"label_agreement":null},{"id":"W1985871989","doi":"10.1128/jcm.01188-06","title":"Identification of “ <i>Haematobacter</i> ,” a New Genus of Aerobic Gram-Negative Rods Isolated from Clinical Specimens, and Reclassification of <i>Rhodobacter massiliensis</i> as “ <i>Haematobacter massiliensis</i> comb. nov.”","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"","keywords":"Microbiology; Biology; Clinical microbiology; Identification (biology); Genus; Ecology","score_opus":0.03364892525638076,"score_gpt":0.36670094366285866,"score_spread":0.3330520184064779,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985871989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953244,0.0012502226,0.00084824965,0.0005796649,0.00010146009,0.00013679822,0.00040525038,0.000040480038,0.0013134622],"genre_scores_gemma":[0.9874232,0.0012997298,0.0059471675,0.0006543067,0.00023183992,0.000114664166,0.0030716334,0.00002858668,0.0012288742],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900717,0.00015379826,0.00014347037,0.00025445537,0.00021638704,0.00022466105],"domain_scores_gemma":[0.998187,0.0002251917,0.00062720303,0.00018400974,0.0004792638,0.00029724228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005830987,0.00072130084,0.00039185703,0.00085204287,0.0004619864,0.00088079344,0.00066834874,0.0009581617,0.0009940095],"category_scores_gemma":[0.0023159005,0.0003275746,0.0004516205,0.00064756547,0.00056044175,0.00077170896,0.0006633998,0.00067133893,0.00070277427],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021272183,0.00053076615,0.4685043,0.0006069415,0.0001259769,0.008479293,0.0018602143,0.00033141056,0.45773062,0.00023815966,0.0032047047,0.05626044],"study_design_scores_gemma":[0.0001454137,0.002726148,0.84077907,0.00020637143,0.0004222071,0.048984427,0.0029114557,0.0017078659,0.08295002,0.0001329398,0.018941347,0.00009282367],"about_ca_topic_score_codex":0.0059619728,"about_ca_topic_score_gemma":0.005194232,"teacher_disagreement_score":0.0059619728,"about_ca_system_score_codex":0.0006245438,"about_ca_system_score_gemma":0.0007531533,"threshold_uncertainty_score":0.011854589},"labels":[],"label_agreement":null},{"id":"W1987493454","doi":"10.1128/jcm.43.1.89-94.2005","title":"Sensitivities and Specificities of Spoligotyping and Mycobacterial Interspersed Repetitive Unit-Variable-Number Tandem Repeat Typing Methods for Studying Molecular Epidemiology of Tuberculosis","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"","keywords":"Typing; Genotyping; Biology; Variable number tandem repeat; Mycobacterium tuberculosis; Tandem repeat; Molecular epidemiology; Genetics; Tuberculosis; Genotype; Medicine; Pathology","score_opus":0.11945576515532559,"score_gpt":0.4724128719872961,"score_spread":0.3529571068319705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987493454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96138465,0.015842073,0.018160293,0.0002359818,0.000080136,0.00008001687,0.00055189343,0.000077252356,0.003587787],"genre_scores_gemma":[0.98507315,0.0024714503,0.011421675,0.000096692595,0.000093161536,0.00006002503,0.0005052381,0.0000145396125,0.0002640696],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98263127,0.008515609,0.0013228959,0.0020193695,0.0049039293,0.00060699263],"domain_scores_gemma":[0.9675357,0.021332253,0.0048867897,0.0020643838,0.0034239376,0.0007568942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012287538,0.0008381027,0.0006205639,0.0026032373,0.0002030036,0.0008654651,0.0007660277,0.0012701089,0.00044533875],"category_scores_gemma":[0.026303228,0.00081225706,0.0006797101,0.0013413177,0.00087217597,0.00089583494,0.00058868085,0.0011617723,0.00037775133],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030198712,0.0002718257,0.83023703,0.0004688135,0.00071694504,0.0002589093,0.0006281431,0.008260164,0.047769774,0.00049843104,0.00053647923,0.10733349],"study_design_scores_gemma":[0.000068690366,0.002814243,0.8906158,0.00025462318,0.0006764752,0.0044208374,0.0002395077,0.03917349,0.056695346,0.00089944835,0.0039854296,0.00015609073],"about_ca_topic_score_codex":0.0012191938,"about_ca_topic_score_gemma":0.0016559244,"teacher_disagreement_score":0.012287538,"about_ca_system_score_codex":0.00067757413,"about_ca_system_score_gemma":0.00036300925,"threshold_uncertainty_score":0.06498349},"labels":[],"label_agreement":null},{"id":"W1987650885","doi":"10.1128/jcm.00634-10","title":"High-Throughput Genotyping of Single Nucleotide Polymorphisms in the <i>Plasmodium falciparum dhfr</i> Gene by Asymmetric PCR and Melt-Curve Analysis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Biology; TaqMan; Genotyping; Melting curve analysis; Single-nucleotide polymorphism; High Resolution Melt; SNP genotyping; Amplicon; Molecular biology; Plasmodium falciparum; Genotype; Variants of PCR; Genetics; Molecular Inversion Probe; Polymerase chain reaction; Gene; Virology; Malaria","score_opus":0.029591291625383594,"score_gpt":0.32822925233599143,"score_spread":0.29863796071060783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987650885","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.37658036,0.0013625042,0.6127029,0.00022711413,0.00011185214,0.0009972325,0.0028638581,0.0030080746,0.0021460818],"genre_scores_gemma":[0.44150087,0.001125513,0.5485363,0.00019453974,0.00012021901,0.0015722421,0.004362567,0.0003097216,0.0022780327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99463236,0.0016384644,0.0003059032,0.0011762959,0.0019775708,0.00026934734],"domain_scores_gemma":[0.99788517,0.00084424217,0.00037331274,0.0002503711,0.00056457444,0.00008239342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026269185,0.0009034911,0.0013069821,0.0016306138,0.00036323114,0.0010124091,0.0010435287,0.00088371965,0.00087633776],"category_scores_gemma":[0.004132671,0.0005656074,0.0009855866,0.001001407,0.00041716342,0.0006752376,0.0007338599,0.0009812813,0.0010213834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001510122,0.00013509525,0.0025457165,0.000100522266,0.000045656805,0.00005146033,0.00007611932,0.0012504342,0.97535616,0.0002515871,0.00032393422,0.019712238],"study_design_scores_gemma":[0.000053600535,0.000525228,0.019303594,0.000026410735,0.00010256808,0.00046697372,0.000038829006,0.055729534,0.9195373,0.0003795481,0.0037402739,0.0000960329],"about_ca_topic_score_codex":0.0008610274,"about_ca_topic_score_gemma":0.0015590985,"teacher_disagreement_score":0.0026269185,"about_ca_system_score_codex":0.00056237134,"about_ca_system_score_gemma":0.0003380321,"threshold_uncertainty_score":0.013892651},"labels":[],"label_agreement":null},{"id":"W1987828296","doi":"10.1128/jcm.00386-14","title":"Genetic Structure of Mycobacterium avium subsp. paratuberculosis Population in Cattle Herds in Quebec as Revealed by Using a Combination of Multilocus Genomic Analyses","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Université de Montréal; Canadian Food Inspection Agency","funders":"Ministère de l'Agriculture et de l'Alimentation; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Paratuberculosis; Biology; Genetic diversity; Genotype; Multilocus sequence typing; Population; Molecular epidemiology; Typing; Genetic variation; Mycobacterium; Variable number tandem repeat; Genetic variability; Microbiology; Genetics; Bacteria","score_opus":0.04487181004351539,"score_gpt":0.40846501344635894,"score_spread":0.36359320340284357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987828296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99856645,0.00033985995,0.00012421113,0.00004413945,0.000003021356,0.000013821428,0.00036840118,0.0000049393852,0.00053537195],"genre_scores_gemma":[0.9989091,0.00012463199,0.00015096314,0.000024880488,0.0000026002201,0.0000068110016,0.00033852598,0.0000016404624,0.00044071427],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995741,0.000060501538,0.000015867481,0.00013206802,0.00009660266,0.00012077395],"domain_scores_gemma":[0.99921584,0.00011372702,0.00013494962,0.000033187316,0.000312649,0.0001896149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052936823,0.00024245719,0.00030526365,0.001517562,0.0011961642,0.0008860125,0.0007114673,0.00041691455,0.0014662226],"category_scores_gemma":[0.00093750795,0.00017722324,0.00018525383,0.001574598,0.0007876652,0.00021470404,0.0002684777,0.00024421883,0.00013523705],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016150544,0.00003688154,0.98577857,0.00003019246,0.000075379685,0.00019411543,0.0010392324,0.0002817809,0.0035993904,0.00007764673,0.00035798384,0.008367402],"study_design_scores_gemma":[0.0000046540667,0.0000352548,0.998321,0.000014716555,0.000014812162,0.000069391725,0.0004853864,0.00056255894,0.00007553017,0.0000069111343,0.00040420156,0.000005638434],"about_ca_topic_score_codex":0.96057785,"about_ca_topic_score_gemma":0.9696325,"teacher_disagreement_score":0.039422154,"about_ca_system_score_codex":0.0088880155,"about_ca_system_score_gemma":0.0029342948,"threshold_uncertainty_score":0.07930857},"labels":[],"label_agreement":null},{"id":"W1989445815","doi":"10.1128/jcm.00112-09","title":"Multiplex Detection of Bacteria Associated with Normal Microbiota and with Bacterial Vaginosis in Vaginal Swabs by Use of Oligonucleotide-Coupled Fluorescent Microspheres","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of British Columbia; University of Saskatchewan; Provincial Health Services Authority; University of Manitoba; Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Bacterial vaginosis; Gardnerella vaginalis; Biology; Microbiology; Lactobacillus; Amplicon; Multiplex; Lactobacillus crispatus; Gram staining; Bacteria; Virology; Polymerase chain reaction; Antibiotics; Gene; Bioinformatics","score_opus":0.026604317874467702,"score_gpt":0.30134651147262026,"score_spread":0.27474219359815255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989445815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91879845,0.0021972859,0.07587637,0.00012220345,0.00008916252,0.0002195946,0.00070131454,0.0005398357,0.001455845],"genre_scores_gemma":[0.81324625,0.0013528533,0.18097727,0.00022351358,0.00007877073,0.0004959721,0.0011626156,0.00004363171,0.0024191113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987857,0.00021311465,0.00007987365,0.00046049122,0.00031726086,0.00014350367],"domain_scores_gemma":[0.9994166,0.00022408112,0.00014426747,0.00003666255,0.000094993185,0.0000835089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009946048,0.00059088133,0.0006133494,0.000979606,0.00024601814,0.0006449663,0.00039078732,0.0008460282,0.00062275527],"category_scores_gemma":[0.001055729,0.00033713243,0.00027521272,0.00048217547,0.0003973006,0.00037982623,0.00058528385,0.00043624043,0.00029667467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012930839,0.000047953148,0.0015841104,0.000053579133,0.000010736049,0.000043632575,0.000063417734,0.0001395662,0.9921808,0.00010218616,0.000031256397,0.005613351],"study_design_scores_gemma":[0.000037199876,0.0014603862,0.021562567,0.000028074826,0.00006705455,0.0008582581,0.00010424112,0.008691211,0.96456593,0.00026838682,0.002315234,0.00004146789],"about_ca_topic_score_codex":0.00036572196,"about_ca_topic_score_gemma":0.00053339003,"teacher_disagreement_score":0.0009946048,"about_ca_system_score_codex":0.0003307292,"about_ca_system_score_gemma":0.0002173516,"threshold_uncertainty_score":0.0052600503},"labels":[],"label_agreement":null},{"id":"W1989572899","doi":"10.1128/jcm.01224-09","title":"Development and Evaluation of a Simple Assay for Marburg Virus Detection Using a Reverse Transcription-Loop-Mediated Isothermal Amplification Method","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Japan Science and Technology Agency; Public Health Agency","keywords":"Reverse Transcription Loop-mediated Isothermal Amplification; Marburg virus; Lassa virus; Virology; Loop-mediated isothermal amplification; Ebola virus; Biology; Virus; Agarose gel electrophoresis; Reverse transcriptase; Molecular biology; Reverse transcription polymerase chain reaction; Agarose; Lassa fever; RNA; Gene; DNA; Messenger RNA; Genetics","score_opus":0.18631075196659863,"score_gpt":0.49388663611920525,"score_spread":0.3075758841526066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989572899","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3970034,0.008488965,0.5840973,0.00055831904,0.0005934015,0.0026520076,0.0009699632,0.002355669,0.003280888],"genre_scores_gemma":[0.4101318,0.0034950527,0.5786718,0.00033547208,0.00014917275,0.0013031425,0.0015584901,0.00013251588,0.0042226203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9946867,0.0012368119,0.00028772163,0.00094124523,0.0026317865,0.00021578044],"domain_scores_gemma":[0.9978719,0.00077379314,0.00032381646,0.00016695372,0.0007395583,0.00012403989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032680426,0.0017021195,0.0012199606,0.0015166093,0.00034356094,0.0011129905,0.0013609151,0.0019069794,0.0007069481],"category_scores_gemma":[0.0031313226,0.0007422136,0.0011238743,0.0005043694,0.0007701045,0.00090836897,0.0007370643,0.0015586613,0.0010007289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080584956,0.00017462019,0.0013104784,0.00021452732,0.000029734854,0.000060604052,0.000051325067,0.00042129002,0.98186505,0.0001818322,0.00012446915,0.0154855605],"study_design_scores_gemma":[0.00003356821,0.000980246,0.0025364133,0.000030017429,0.00008353999,0.0004957075,0.000031959757,0.010673816,0.98165786,0.000084671075,0.0033331113,0.000059036196],"about_ca_topic_score_codex":0.0009549974,"about_ca_topic_score_gemma":0.001088331,"teacher_disagreement_score":0.0032680426,"about_ca_system_score_codex":0.00077614945,"about_ca_system_score_gemma":0.00085399963,"threshold_uncertainty_score":0.01728332},"labels":[],"label_agreement":null},{"id":"W1989844967","doi":"10.1128/jcm.00370-08","title":"Multicenter Comparison of PCR Assays for Detection of Human Herpesvirus 6 DNA in Serum","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"HHV-6 Foundation","keywords":"TaqMan; Human herpesvirus 6; Biology; Virology; Real-time polymerase chain reaction; Virus; Computational biology; Herpesviridae; Genetics; Viral disease; Gene","score_opus":0.14928589422030583,"score_gpt":0.46094610655267276,"score_spread":0.31166021233236696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989844967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97050136,0.0019537322,0.022523148,0.00012873136,0.00023097667,0.0010624476,0.001018599,0.00030266808,0.0022784844],"genre_scores_gemma":[0.96960235,0.0005095938,0.026128322,0.00018042968,0.000057252975,0.00082436774,0.0018782637,0.000051171293,0.0007681835],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.97754866,0.01052957,0.0021725341,0.0046125487,0.0044553536,0.00068131933],"domain_scores_gemma":[0.980804,0.007974647,0.002179694,0.001970079,0.0063982615,0.0006733176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.021179408,0.0010694707,0.0007619217,0.0018157546,0.0005284136,0.0012802094,0.00085358275,0.00092340715,0.0007472738],"category_scores_gemma":[0.026157904,0.0007571378,0.0005515429,0.0012651128,0.000859323,0.00053681363,0.0007362496,0.0008752192,0.00055107207],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016371658,0.003128649,0.5203857,0.0007471242,0.00084694993,0.00029109797,0.0032759549,0.0023340888,0.35892186,0.0011068401,0.0014106137,0.091179445],"study_design_scores_gemma":[0.0015663852,0.04318742,0.58116525,0.00025846332,0.0013515536,0.002301232,0.0019072116,0.012227758,0.34521684,0.0007215793,0.009919861,0.00017652547],"about_ca_topic_score_codex":0.001136695,"about_ca_topic_score_gemma":0.0011890698,"teacher_disagreement_score":0.021179408,"about_ca_system_score_codex":0.0009314704,"about_ca_system_score_gemma":0.0007760079,"threshold_uncertainty_score":0.11200875},"labels":[],"label_agreement":null},{"id":"W1990537537","doi":"10.1128/jcm.41.11.5333-5336.2003","title":"Allergic Fungal Sinusitis Associated with <i>Trichoderma longibrachiatum</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Sinusitis and nasal conditions","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Mount Sinai Hospital","funders":"","keywords":"Itraconazole; Trichoderma; Chlamydospore; Medicine; Sinusitis; Dermatology; Sinus (botany); Microbiology; Allergy; Biopsy; Immunology; Pathology; Biology; Antifungal; Botany","score_opus":0.04002183105216811,"score_gpt":0.3403790219051017,"score_spread":0.3003571908529336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990537537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841462,0.0035102356,0.0015040713,0.0014997593,0.00018400126,0.00007129282,0.00006382827,0.00014893089,0.008871775],"genre_scores_gemma":[0.9967277,0.0009771751,0.00073624874,0.00058248674,0.00034620133,0.0000114502445,0.000028359795,0.000012590296,0.00057765795],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99962914,0.00005375926,0.000041900348,0.00005218493,0.000051165818,0.00017184384],"domain_scores_gemma":[0.9993274,0.000205426,0.00020579307,0.00004385843,0.00003849459,0.00017909323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026082573,0.001272761,0.0006252832,0.00069035165,0.0012191185,0.0010202462,0.0003956327,0.0021283198,0.0021097942],"category_scores_gemma":[0.0014342982,0.0004918894,0.00057419616,0.00050046586,0.0010471412,0.00084087375,0.00073166686,0.0014258458,0.00079133274],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000083842984,0.000055048902,0.032874987,0.00007878965,0.000018104065,0.9589693,0.0003561535,0.0000739356,0.0034134858,0.00012571628,0.00059785886,0.0033528258],"study_design_scores_gemma":[0.000017913717,0.00014878616,0.008265544,0.000012221059,0.00001934002,0.98978466,0.00017406364,0.00016222474,0.0007256094,0.00006503564,0.00061683997,0.000007823208],"about_ca_topic_score_codex":0.00132043,"about_ca_topic_score_gemma":0.0016596903,"teacher_disagreement_score":0.0021283198,"about_ca_system_score_codex":0.00033417917,"about_ca_system_score_gemma":0.00030051806,"threshold_uncertainty_score":0.007057965},"labels":[],"label_agreement":null},{"id":"W1991557315","doi":"10.1128/jcm.00775-10","title":"Characterization of <i>Staphylococcus aureus</i> Isolates with a Partial or Complete Absence of Staphylococcal Cassette Chromosome Elements","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Guelph; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"SCCmec; Staphylococcus aureus; Biology; Microbiology; Amplicon; Transposable element; Autolysin; Locus (genetics); Staphylococcal infections; Sequence analysis; Polymerase chain reaction; Genetics; Gene; ORFS; Virology; Methicillin-resistant Staphylococcus aureus; Open reading frame; Genome; Antibiotics; Bacteria; Peptide sequence; Streptococcus pneumoniae","score_opus":0.03451719069400872,"score_gpt":0.34088079290388085,"score_spread":0.30636360220987213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991557315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844295,0.00009661645,0.00071026175,0.000024968827,0.00000381759,0.000029438323,0.00025013243,0.000013123299,0.00042868895],"genre_scores_gemma":[0.9962226,0.00011607444,0.002138339,0.000046187386,0.0000066728358,0.000026670607,0.0010400899,0.000011489562,0.00039175854],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996482,0.00004761226,0.00006040732,0.000075434655,0.000113425645,0.00005488286],"domain_scores_gemma":[0.9992963,0.00016192047,0.00019907235,0.00005820899,0.00018811409,0.000096420095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018667555,0.0003657366,0.00023830596,0.00048477147,0.00017204515,0.00034616748,0.00016360598,0.00033212677,0.0005509568],"category_scores_gemma":[0.0009095558,0.00016208505,0.00028297596,0.00032446647,0.00022917391,0.00015830409,0.00020037212,0.0002559303,0.00025127135],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011342367,0.000056719982,0.029555658,0.00003964015,0.0000133121985,0.00044462233,0.00011958845,0.00007020815,0.9678439,0.000038314367,0.000054761134,0.0016499633],"study_design_scores_gemma":[0.000019133086,0.0013864753,0.3778504,0.000036608133,0.00011138587,0.009643865,0.00074897317,0.0014296768,0.60595393,0.0000754008,0.0027174235,0.000026647693],"about_ca_topic_score_codex":0.0022548672,"about_ca_topic_score_gemma":0.002180656,"teacher_disagreement_score":0.0022548672,"about_ca_system_score_codex":0.00015460746,"about_ca_system_score_gemma":0.00019976722,"threshold_uncertainty_score":0.0044834614},"labels":[],"label_agreement":null},{"id":"W1991707939","doi":"10.1128/jcm.42.9.4054-4059.2004","title":"Evaluation of the Core Antigen Assay as a Second-Line Supplemental Test for Diagnosis of Active Hepatitis C Virus Infection","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control; Bayer HealthCare","keywords":"Hepatitis C virus; Virology; Flaviviridae; Antigen; Antibody; Viral disease; Medicine; Hepatitis C; Immunoassay; Hepacivirus; Virus; Viral load; Immunology; Biology","score_opus":0.1553593760032258,"score_gpt":0.48653046125976607,"score_spread":0.33117108525654027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991707939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9712309,0.0088495305,0.010375916,0.00045782258,0.00016868522,0.00038556018,0.00039780262,0.00023907144,0.007894619],"genre_scores_gemma":[0.9917031,0.0005516482,0.006710438,0.00020670459,0.000037913625,0.000048968614,0.0002464687,0.000012426617,0.00048233088],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99396074,0.002132683,0.00042005276,0.00044060426,0.0027460665,0.00029981136],"domain_scores_gemma":[0.98557407,0.007217307,0.0014828108,0.0006259269,0.004194691,0.000905181],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007303289,0.00070091785,0.0008310003,0.001466244,0.0002794189,0.0012039806,0.00061652425,0.0006837842,0.00089658046],"category_scores_gemma":[0.013958493,0.00031358743,0.00034416234,0.0005993742,0.00054045545,0.0005329359,0.000329619,0.00067919435,0.0005475216],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033423016,0.0006408934,0.8311024,0.00035537122,0.00016427145,0.0014108265,0.00037543025,0.0007888347,0.0924927,0.0002675421,0.0013577519,0.06770175],"study_design_scores_gemma":[0.00034483144,0.014423805,0.8334893,0.0002851831,0.00041236528,0.012011049,0.00041431104,0.028734269,0.09923129,0.0002066832,0.010362538,0.00008437701],"about_ca_topic_score_codex":0.0039493213,"about_ca_topic_score_gemma":0.0050785406,"teacher_disagreement_score":0.007303289,"about_ca_system_score_codex":0.0007840971,"about_ca_system_score_gemma":0.0011062829,"threshold_uncertainty_score":0.03862393},"labels":[],"label_agreement":null},{"id":"W1991784964","doi":"10.1128/jcm.43.10.5195-5201.2005","title":"First Case of Septicemia Due to a Strain Belonging to Enteric Group 58 ( <i>Enterobacteriaceae</i> ) and Its Designation as <i>Averyella dalhousiensis</i> gen. nov., sp. nov., Based on Analysis of Strains from 20 Additional Cases","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"Centers for Disease Control and Prevention; IWK Health Centre; Morehouse School of Medicine","keywords":"Enterobacteriaceae; Biology; Enterobacter; Microbiology; Salmonella; Feces; Serratia; 16S ribosomal RNA; Bacteria; Escherichia coli; Genetics; Gene","score_opus":0.026122209366372936,"score_gpt":0.32907387898988116,"score_spread":0.3029516696235082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991784964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875711,0.0016576274,0.002205793,0.0012801214,0.00033828322,0.0002454081,0.0002484302,0.00007887852,0.006374362],"genre_scores_gemma":[0.9954764,0.0010036002,0.0013670058,0.0008038179,0.00043613237,0.00003598224,0.00019511233,0.000013372462,0.00066848926],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9990701,0.00012726441,0.00017710414,0.00021431402,0.0001528289,0.00025845904],"domain_scores_gemma":[0.9986077,0.0003683867,0.00033686488,0.00020852702,0.00011270665,0.0003658486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044198203,0.0016261572,0.0005861768,0.00138425,0.0019439221,0.0008363943,0.0009194196,0.0028390733,0.0015690139],"category_scores_gemma":[0.002710987,0.0010575469,0.0010797823,0.000825118,0.0017638843,0.0013240846,0.001425788,0.0020995701,0.0006878397],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042162623,0.00039428336,0.12026974,0.00020525078,0.000083740226,0.8582589,0.0016352435,0.00017023434,0.0064688213,0.00038579936,0.0020752044,0.009631068],"study_design_scores_gemma":[0.00007279572,0.001179495,0.06582689,0.00009296519,0.00007925478,0.92502505,0.0007233038,0.00029648485,0.0019587802,0.00019268513,0.004500569,0.000051775405],"about_ca_topic_score_codex":0.0030328338,"about_ca_topic_score_gemma":0.003962302,"teacher_disagreement_score":0.0030328338,"about_ca_system_score_codex":0.0008996046,"about_ca_system_score_gemma":0.0005962512,"threshold_uncertainty_score":0.006527066},"labels":[],"label_agreement":null},{"id":"W1991995054","doi":"10.1128/jcm.01275-13","title":"Novel Method Based on “En Passant” Mutagenesis Coupled with a Gaussia Luciferase Reporter Assay for Studying the Combined Effects of Human Cytomegalovirus Mutations","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Luciferase; Mutagenesis; Human cytomegalovirus; Molecular biology; Biology; Virology; Cytomegalovirus; Mutation; Virus; Genetics; Transfection; Cell culture; Gene; Herpesviridae; Viral disease","score_opus":0.062135202637933824,"score_gpt":0.41466808879155936,"score_spread":0.35253288615362555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991995054","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14837049,0.002033681,0.84207773,0.0003210578,0.0003298952,0.0008412203,0.00089104375,0.0029768683,0.0021581438],"genre_scores_gemma":[0.2317268,0.003020059,0.75290203,0.00027756573,0.00007788578,0.0015995465,0.002780836,0.0003658135,0.0072494103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971065,0.0006955811,0.0002737474,0.0008453624,0.0009158041,0.00016298928],"domain_scores_gemma":[0.9993217,0.00018356495,0.00015568973,0.00013504014,0.00013500423,0.00006904692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015759771,0.0019058073,0.0012789414,0.0012831985,0.00038658638,0.00064924016,0.0014296678,0.001342537,0.0011288782],"category_scores_gemma":[0.00064385554,0.0009192506,0.0011460744,0.000586549,0.0005827714,0.00063242315,0.00097111985,0.002356791,0.0013006738],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042678632,0.00006828201,0.00009933163,0.000063360276,0.000015409445,0.000030619165,0.000019767296,0.000047562487,0.9962936,0.00014748165,0.00008682271,0.0030850458],"study_design_scores_gemma":[0.000013053335,0.0002538217,0.0005456398,0.0000075147955,0.00003713297,0.00036984874,0.000010157584,0.0018839425,0.994259,0.0000511905,0.0025360018,0.000032711156],"about_ca_topic_score_codex":0.00050213013,"about_ca_topic_score_gemma":0.0006262213,"teacher_disagreement_score":0.0019058073,"about_ca_system_score_codex":0.00042164564,"about_ca_system_score_gemma":0.00057757733,"threshold_uncertainty_score":0.008334637},"labels":[],"label_agreement":null},{"id":"W1992696418","doi":"10.1128/jcm.01612-08","title":"Comparison of <i>Neisseria gonorrhoeae</i> Multiantigen Sequence Typing and <i>porB</i> Sequence Analysis for Identification of Clusters of <i>N. gonorrhoeae</i> Isolates","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Saskatchewan","funders":"","keywords":"Neisseria gonorrhoeae; Typing; Biology; Neisseriaceae; Sequence analysis; Microbiology; Sequence (biology); Molecular epidemiology; Genetics; Neisseria; Virology; DNA; Genotype; Bacteria; Gene; Antibiotics","score_opus":0.1471935271232993,"score_gpt":0.44412427304948143,"score_spread":0.2969307459261821,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992696418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962327,0.0004900318,0.0018244616,0.00003103761,0.000014356853,0.000030348217,0.00016840186,0.000011673219,0.0011969763],"genre_scores_gemma":[0.9917658,0.00037854424,0.0066158487,0.00003945731,0.000009877751,0.000027429669,0.0008781928,0.000007834337,0.00027688988],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990274,0.00038319768,0.000095364754,0.00012734857,0.00026318853,0.00010350729],"domain_scores_gemma":[0.9977036,0.0013118198,0.00022731663,0.000117218304,0.0004302561,0.00020982731],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010387809,0.00027500343,0.00025128812,0.0011726387,0.00020119686,0.00040575632,0.00023792118,0.0003702604,0.0007881412],"category_scores_gemma":[0.0029624288,0.00014052472,0.00033032717,0.00058583106,0.00019688404,0.00032590094,0.000287724,0.00021214229,0.00034123875],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035378626,0.0006677446,0.14561956,0.00070235075,0.00020132205,0.00035364003,0.0009459228,0.0009456035,0.7836811,0.00033323612,0.00028462138,0.062727086],"study_design_scores_gemma":[0.000120867866,0.0062610176,0.7855818,0.00012760214,0.0003154359,0.0042854,0.0008668319,0.007318468,0.19123575,0.00031016002,0.003524028,0.00005271581],"about_ca_topic_score_codex":0.0008383963,"about_ca_topic_score_gemma":0.0019054643,"teacher_disagreement_score":0.0011726387,"about_ca_system_score_codex":0.0001805258,"about_ca_system_score_gemma":0.00020838797,"threshold_uncertainty_score":0.005493641},"labels":[],"label_agreement":null},{"id":"W1992906241","doi":"10.1128/jcm.41.3.1080-1086.2003","title":"International Proficiency Study of a Consensus L1 PCR Assay for the Detection and Typing of Human Papillomavirus DNA: Evaluation of Accuracy and Intralaboratory and Interlaboratory Agreement","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Université de Montréal; Hôpital Notre-Dame","funders":"","keywords":"Typing; Amplicon; Kappa; Primer (cosmetics); Papillomaviridae; Biology; Polymerase chain reaction; Reproducibility; Virology; Genotype; Molecular biology; Genetics; Chemistry; Chromatography; Gene; Cervical cancer; Cancer","score_opus":0.1437737807232978,"score_gpt":0.4801202237290153,"score_spread":0.3363464430057175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992906241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8660979,0.0026213292,0.11251343,0.00042889098,0.00035888553,0.0021799305,0.0010051792,0.00081312517,0.013981337],"genre_scores_gemma":[0.94997984,0.00037545705,0.044898722,0.00034454334,0.00006324162,0.00118982,0.0018741422,0.00019626528,0.0010781391],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.91066116,0.048685547,0.008320781,0.012194577,0.018798232,0.0013397177],"domain_scores_gemma":[0.8933312,0.044513807,0.007949742,0.018315976,0.033708483,0.0021808085],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.07470868,0.0010899948,0.0010632733,0.0021963783,0.0011427607,0.0019387614,0.0026643418,0.002114387,0.001310474],"category_scores_gemma":[0.0839266,0.000900696,0.0008580944,0.001750901,0.0027208365,0.0009974109,0.0022029812,0.0012037113,0.0012509485],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0080301855,0.003469129,0.53263855,0.0018422841,0.0018541923,0.00080287637,0.018250966,0.0061568683,0.19575264,0.0047598872,0.0065392246,0.21990316],"study_design_scores_gemma":[0.0017619483,0.02141053,0.66368186,0.0012430322,0.0020147178,0.007098597,0.004731716,0.047295082,0.20662573,0.0026081724,0.040984824,0.00054381817],"about_ca_topic_score_codex":0.001787826,"about_ca_topic_score_gemma":0.0017073521,"teacher_disagreement_score":0.9252913,"about_ca_system_score_codex":0.0011357762,"about_ca_system_score_gemma":0.0016056075,"threshold_uncertainty_score":0.39510196},"labels":[],"label_agreement":null},{"id":"W1993312135","doi":"10.1128/jcm.02363-12","title":"Disk Diffusion Method for Erythromycin and Ciprofloxacin Susceptibility Testing of Campylobacter jejuni and Campylobacter coli","year":2012,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc","funders":"","keywords":"Campylobacter jejuni; Erythromycin; Campylobacter; Ciprofloxacin; Microbiology; Campylobacter coli; Antimicrobial; Biology; Campylobacter fetus; Antibiotics; Bacteria","score_opus":0.09822983444181121,"score_gpt":0.3599411890917657,"score_spread":0.2617113546499545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993312135","genre_codex":"commentary","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3142269,0.05494504,0.08024263,0.3504161,0.047287278,0.0021574365,0.0019073298,0.00220496,0.14661229],"genre_scores_gemma":[0.6759677,0.030415127,0.06184981,0.13608037,0.02187049,0.0014512851,0.0013742783,0.0003172367,0.07067368],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965886,0.0012025147,0.00046672267,0.00028703973,0.0012446411,0.00021039788],"domain_scores_gemma":[0.99616313,0.0021504248,0.0003489923,0.0002580373,0.00087424606,0.00020513283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014564887,0.00070327776,0.0012004074,0.0011199783,0.0006466238,0.0009485789,0.0018088415,0.0060371663,0.004688291],"category_scores_gemma":[0.008898699,0.00042727366,0.0005002062,0.0007379115,0.0011421753,0.0009740536,0.00034904823,0.0042202924,0.005650936],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029912228,0.0029393488,0.050100464,0.0032548814,0.000106954525,0.15092945,0.003444045,0.00041567866,0.17761242,0.006827116,0.3765075,0.2248709],"study_design_scores_gemma":[0.00033378685,0.007462367,0.05082238,0.0011687898,0.00021810841,0.41291422,0.002775554,0.0037662669,0.10132431,0.0033359195,0.41558385,0.0002943929],"about_ca_topic_score_codex":0.001197039,"about_ca_topic_score_gemma":0.0021484892,"teacher_disagreement_score":0.0060371663,"about_ca_system_score_codex":0.0007453603,"about_ca_system_score_gemma":0.0004766056,"threshold_uncertainty_score":0.01568389},"labels":[],"label_agreement":null},{"id":"W1993591060","doi":"10.1128/jcm.39.5.2037-2038.2001","title":"Discordant Carbapenem Susceptibility in <b> <i>Methylobacterium</i> Species and Its Application as a Method for Phenotypic Identification </b>","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"","keywords":"Methylobacterium; Identification (biology); Biology; Microbiology; Phenotype; Carbapenem; Computational biology; Bacteria; Genetics; Gene; Antibiotics; Botany; 16S ribosomal RNA","score_opus":0.028249679054437038,"score_gpt":0.37257825750337625,"score_spread":0.3443285784489392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993591060","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737215,0.00024804694,0.0012621069,0.00017187954,0.000021707881,0.000042829517,0.00008740396,0.000019368545,0.00077450206],"genre_scores_gemma":[0.99692625,0.00013940857,0.0026212565,0.00009427659,0.000019404599,0.000011992566,0.00006572428,0.000006969432,0.00011473236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894387,0.00026608485,0.00018120957,0.00021827115,0.00021285895,0.00017778062],"domain_scores_gemma":[0.99795073,0.0006357922,0.00055371027,0.00019253987,0.00045010398,0.0002172374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008190149,0.00034698952,0.00037870632,0.001255912,0.0005860952,0.000785365,0.00046465354,0.0009796685,0.00071681006],"category_scores_gemma":[0.004308217,0.00030204732,0.00022119652,0.000550091,0.0006114178,0.00037025916,0.0005387617,0.0004985069,0.00039771627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007994309,0.00017976125,0.40922052,0.00024197804,0.00004751208,0.017498897,0.0016889238,0.00016729005,0.5557874,0.0002449173,0.00023584922,0.0138875125],"study_design_scores_gemma":[0.000045977835,0.0012593518,0.36508614,0.00012797736,0.00023489821,0.10664577,0.0037393942,0.0026612582,0.51542264,0.00037456935,0.0043280334,0.00007406571],"about_ca_topic_score_codex":0.002210976,"about_ca_topic_score_gemma":0.0018749749,"teacher_disagreement_score":0.002210976,"about_ca_system_score_codex":0.00027631488,"about_ca_system_score_gemma":0.00024022954,"threshold_uncertainty_score":0.0043962},"labels":[],"label_agreement":null},{"id":"W1993926253","doi":"10.1128/jcm.43.5.2449-2451.2005","title":"Use of Monoclonal Antibodies To Serotype <i>Bordetella pertussis</i> Isolates: Comparison of Results Obtained by Indirect Whole-Cell Enzyme-Linked Immunosorbent Assay and Bacterial Microagglutination Methods","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Bordetella pertussis; Monoclonal antibody; Serotype; Microbiology; Whooping cough; Biology; Enzyme; Virology; Bordetella; Antibody; Bacteria; Immunology; Vaccination; Biochemistry; Genetics","score_opus":0.062081514621225346,"score_gpt":0.3833647712732139,"score_spread":0.32128325665198854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993926253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873481,0.0018603549,0.008745074,0.000051070063,0.00007092865,0.00014480819,0.00022479017,0.00010608953,0.0014487249],"genre_scores_gemma":[0.98052305,0.0011825926,0.016578712,0.000116312665,0.000042920394,0.00023073988,0.000629582,0.000023974862,0.00067214546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962041,0.001049795,0.0005155296,0.0007259356,0.0010923535,0.0004123977],"domain_scores_gemma":[0.99395615,0.0029357725,0.0007899261,0.0006753539,0.0013638348,0.00027894587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002093959,0.0008784918,0.000982989,0.0011096632,0.0004464309,0.00052943506,0.00062011695,0.0010432826,0.000650152],"category_scores_gemma":[0.0056115505,0.0006874472,0.00058889383,0.0005870076,0.0005958399,0.00038486434,0.0005817988,0.00061700185,0.0004643478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015945287,0.00022749111,0.044603053,0.00038573408,0.00014643733,0.00008991816,0.00042506776,0.000113845235,0.93760675,0.000068578054,0.00009842202,0.014640188],"study_design_scores_gemma":[0.00017164658,0.00464517,0.15026341,0.000061485676,0.0005227449,0.0021124398,0.00036207805,0.0011908863,0.8388339,0.00011382741,0.0016525439,0.00006971839],"about_ca_topic_score_codex":0.0011009817,"about_ca_topic_score_gemma":0.0013010231,"teacher_disagreement_score":0.002093959,"about_ca_system_score_codex":0.00040597314,"about_ca_system_score_gemma":0.00022188557,"threshold_uncertainty_score":0.011074007},"labels":[],"label_agreement":null},{"id":"W1994832571","doi":"10.1128/jcm.43.7.3447-3449.2005","title":"Human Clinical Isolates of<i>Corynebacterium diphtheriae</i>and<i>Corynebacterium ulcerans</i>Collected in Canada from 1999 to 2003 but Not Fitting Reporting Criteria for Cases of Diphtheria","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; Public Health Agency of Canada","funders":"British Columbia Centre for Disease Control","keywords":"Corynebacterium diphtheriae; Diphtheria; Microbiology; Diphtheria toxin; Corynebacterium; Biology; Virology; Toxin; Bacteria; Vaccination","score_opus":0.04579192946062799,"score_gpt":0.3582889210582878,"score_spread":0.3124969915976598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994832571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929859,0.00070888986,0.0003907832,0.0001032273,0.000020656664,0.00020494203,0.0027881807,0.000016514019,0.002780968],"genre_scores_gemma":[0.9873447,0.00065323344,0.0014225879,0.00027598802,0.000020368825,0.000037916612,0.0071616406,0.000009464095,0.0030741042],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99966145,0.00002268054,0.000022658358,0.00005989556,0.0001171024,0.00011624874],"domain_scores_gemma":[0.9995363,0.000037505954,0.000051510033,0.000033868622,0.00025618763,0.00008475642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016305,0.0002947744,0.00031582027,0.0005066048,0.0010060511,0.00051831757,0.0002373941,0.0002856078,0.0009731033],"category_scores_gemma":[0.00057184225,0.00016544267,0.00015181862,0.0011190302,0.000346232,0.000082379556,0.00023174628,0.00028344875,0.00032960204],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001493556,0.0004835996,0.7326611,0.00037003064,0.00009592588,0.0032327091,0.004013185,0.0002936869,0.22305784,0.000399442,0.004704331,0.029194592],"study_design_scores_gemma":[0.000046547535,0.00055130024,0.9521488,0.00004294704,0.000059600527,0.004682936,0.001755561,0.00019297833,0.027443962,0.000051514675,0.013005612,0.000018151808],"about_ca_topic_score_codex":0.48030162,"about_ca_topic_score_gemma":0.46831226,"teacher_disagreement_score":0.5196984,"about_ca_system_score_codex":0.0019482269,"about_ca_system_score_gemma":0.00225777,"threshold_uncertainty_score":0.9550119},"labels":[],"label_agreement":null},{"id":"W1995514873","doi":"10.1128/jcm.00362-14","title":"Antimicrobial Susceptibility of Campylobacter jejuni and Campylobacter coli Isolates Obtained in Montreal, Quebec, Canada, from 2002 to 2013","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Université de Montréal; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Campylobacter jejuni; Ciprofloxacin; Campylobacter; Tetracycline; Erythromycin; Microbiology; Campylobacter coli; Biology; Antimicrobial; Antibiotics; Bacteria","score_opus":0.020472137102457582,"score_gpt":0.2665935238466331,"score_spread":0.24612138674417552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995514873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97124755,0.004293464,0.00037016036,0.0004172525,0.000054054857,0.00018197694,0.01696938,0.000036609825,0.006429519],"genre_scores_gemma":[0.9889498,0.0012728171,0.00056091935,0.00029231608,0.000020133812,0.000039418057,0.005303162,0.00001163743,0.0035498883],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991391,0.00005564578,0.00006648334,0.00017655377,0.00034273564,0.0002194481],"domain_scores_gemma":[0.99787676,0.00008164791,0.00025900087,0.00002887241,0.0013580073,0.00039571556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005478181,0.00071803253,0.00045499095,0.0016336917,0.0020543262,0.0009734746,0.0013141612,0.00045978074,0.00220961],"category_scores_gemma":[0.0017253681,0.00043289072,0.00044942534,0.0032808445,0.00061267515,0.00032246386,0.0005174169,0.00067632966,0.0002537726],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003137029,0.00011416764,0.9743362,0.0001983873,0.00017471623,0.00067160296,0.0011846032,0.0005266173,0.004981842,0.000087385735,0.0049270545,0.012483573],"study_design_scores_gemma":[0.00000854824,0.000056589633,0.99675167,0.00003738042,0.000028304463,0.000118894255,0.0005294184,0.00016043097,0.00044521297,0.0000036280364,0.0018481787,0.000011764932],"about_ca_topic_score_codex":0.9937388,"about_ca_topic_score_gemma":0.99679404,"teacher_disagreement_score":0.025060989,"about_ca_system_score_codex":0.025060989,"about_ca_system_score_gemma":0.014085052,"threshold_uncertainty_score":0.18183106},"labels":[],"label_agreement":null},{"id":"W1995928920","doi":"10.1128/jcm.01479-12","title":"Identification of Blood Culture Isolates Directly from Positive Blood Cultures by Use of Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry and a Commercial Extraction System: Analysis of Performance, Cost, and Turnaround Time","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":203,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Turnaround time; Matrix-assisted laser desorption/ionization; Mass spectrometry; Identification (biology); Blood culture; Clinical microbiology; Chromatography; Microbiology; Biology; Medicine; Chemistry; Desorption; Computer science","score_opus":0.015894417294573977,"score_gpt":0.3056965889438902,"score_spread":0.2898021716493162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995928920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95116967,0.0024469895,0.04486612,0.0001033801,0.000055136472,0.00028721325,0.00034893863,0.00013819756,0.00058434805],"genre_scores_gemma":[0.83763176,0.002204788,0.15691487,0.00017401756,0.000060451097,0.00029457256,0.0014741698,0.00006984778,0.0011755304],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9947754,0.0013084874,0.0004725299,0.0005712353,0.0027019642,0.00017025473],"domain_scores_gemma":[0.9962554,0.0015076727,0.0007171587,0.00028704343,0.0010982405,0.00013448912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027430516,0.00092805503,0.00090552587,0.001376241,0.00032120987,0.0009855119,0.0006308303,0.00069818046,0.00060858676],"category_scores_gemma":[0.0068934695,0.00041335824,0.00045379245,0.001168659,0.00049472816,0.0005849381,0.00052112935,0.00052161166,0.00082004693],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020664195,0.00056535314,0.056338694,0.00032404438,0.000087815184,0.00030498454,0.0002226468,0.00043499458,0.87315744,0.000099545236,0.00019055491,0.06620743],"study_design_scores_gemma":[0.00009145318,0.00483823,0.12978877,0.00004069185,0.00019616935,0.0028826734,0.00019314016,0.010427939,0.8499178,0.00010912596,0.0014321395,0.000081830935],"about_ca_topic_score_codex":0.0015274029,"about_ca_topic_score_gemma":0.0021171414,"teacher_disagreement_score":0.0027430516,"about_ca_system_score_codex":0.00041951812,"about_ca_system_score_gemma":0.00064649625,"threshold_uncertainty_score":0.014506817},"labels":[],"label_agreement":null},{"id":"W1996633814","doi":"10.1128/jcm.02219-12","title":"Comparison of Three Different Methods for Detection of Shiga Toxin-Producing Escherichia coli in a Tertiary Pediatric Care Center","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"MacConkey agar; STX2; Microbiology; Escherichia coli; Serotype; Shiga toxin; Diarrhea; Medicine; Immunoassay; Agar; Virology; Biology; Bacteria; Internal medicine; Immunology; Antibody","score_opus":0.06985886779523935,"score_gpt":0.4585697548564281,"score_spread":0.3887108870611887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996633814","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948271,0.0012986074,0.002975764,0.000078972,0.000027330852,0.00012563948,0.00013060226,0.0000948135,0.0004411237],"genre_scores_gemma":[0.9844785,0.00081275136,0.013693217,0.00020562284,0.00004081808,0.00011381875,0.00045248182,0.00003135827,0.00017151833],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9922146,0.002743693,0.00061877293,0.0010278531,0.0029282265,0.00046692113],"domain_scores_gemma":[0.9877891,0.00606478,0.0021098296,0.0005529588,0.0025196546,0.00096370943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036826124,0.0010355815,0.0010144521,0.0020269202,0.0004738211,0.0012247552,0.00095228606,0.00088444113,0.0005991034],"category_scores_gemma":[0.010743019,0.0006471453,0.000575439,0.0014335826,0.00055085705,0.0005229977,0.0008562298,0.0007850276,0.0002819943],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004355233,0.00087454997,0.8863697,0.0005769689,0.00032027272,0.0004821491,0.0014575195,0.00093712134,0.052539818,0.000063625695,0.0004139032,0.051609166],"study_design_scores_gemma":[0.00035335217,0.01244622,0.9144171,0.00014213886,0.00057511317,0.0032042104,0.0018195865,0.0069740335,0.05868434,0.000043602406,0.0012438055,0.00009664248],"about_ca_topic_score_codex":0.0028795034,"about_ca_topic_score_gemma":0.0039570965,"teacher_disagreement_score":0.0036826124,"about_ca_system_score_codex":0.0011415086,"about_ca_system_score_gemma":0.0008500711,"threshold_uncertainty_score":0.019475758},"labels":[],"label_agreement":null},{"id":"W1996661137","doi":"10.1128/jcm.03341-12","title":"An Unusual Cause of False-Positive Results with the BD GeneOhm Cdiff Assay","year":2013,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"False Negative Reactions; Medicine; Radiology","score_opus":0.0647449686727655,"score_gpt":0.3887594627863031,"score_spread":0.32401449411353755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996661137","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5599416,0.025202284,0.050281897,0.19065276,0.019567536,0.00067738554,0.00086302054,0.0036275284,0.14918606],"genre_scores_gemma":[0.9280447,0.002895223,0.010492236,0.045168072,0.006156375,0.00009773195,0.00017484857,0.0002625727,0.0067080953],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9955959,0.0011978858,0.00055505644,0.0006537791,0.0012294054,0.00076793006],"domain_scores_gemma":[0.9902486,0.0056537227,0.0014938458,0.00082382903,0.0010163661,0.00076360855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014460062,0.0021817675,0.0015150295,0.0022072184,0.0014210809,0.0020072584,0.0019673335,0.010955469,0.0024765898],"category_scores_gemma":[0.019342422,0.00081994967,0.0011077151,0.0016930898,0.0018444485,0.0018625337,0.0010881278,0.007652414,0.003454751],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001817614,0.000096156866,0.008053224,0.00007387319,0.000014224236,0.9680751,0.00028664462,0.0001423669,0.001937075,0.000716819,0.012539151,0.007883616],"study_design_scores_gemma":[0.000017066619,0.000108740096,0.0014286331,0.000058517504,0.00002083398,0.99049896,0.00010692526,0.0007542058,0.0015309108,0.0005152711,0.004943184,0.000016815296],"about_ca_topic_score_codex":0.0014728107,"about_ca_topic_score_gemma":0.0015514998,"teacher_disagreement_score":0.010955469,"about_ca_system_score_codex":0.0018293669,"about_ca_system_score_gemma":0.00072329637,"threshold_uncertainty_score":0.01327306},"labels":[],"label_agreement":null},{"id":"W1996676954","doi":"10.1128/jcm.40.7.2425-2430.2002","title":"Histologic and Genotypic Characterization of a Novel <i>Mycobacterium</i> Species Found in Three Cats","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Saskatchewan","funders":"","keywords":"CATS; Genotype; Mycobacterium; Biology; Microbiology; Medicine; Bacteria; Genetics; Internal medicine; Gene","score_opus":0.1192610813911074,"score_gpt":0.3522092886070777,"score_spread":0.23294820721597026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996676954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993631,0.00009892688,0.00019425346,0.000018907464,0.0000023147525,0.000015316653,0.000025541136,0.0000041765475,0.00027749283],"genre_scores_gemma":[0.99924684,0.000071572955,0.0004296702,0.000028923358,0.0000039975807,0.0000069757757,0.00008200482,0.0000024699746,0.00012763446],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996973,0.000038144284,0.000037723334,0.00007635921,0.00006207509,0.00008829501],"domain_scores_gemma":[0.99948394,0.00009359992,0.00017661051,0.000042535175,0.00006496474,0.00013841446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003407911,0.00042336018,0.00031750454,0.0008648171,0.00073717703,0.00063899555,0.00038405694,0.0010644505,0.00061402115],"category_scores_gemma":[0.0010613049,0.0004391544,0.00029874183,0.00033801133,0.0010172529,0.00030227637,0.00041735318,0.0003291483,0.00015197258],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083825865,0.000222294,0.69829553,0.0002849424,0.00012387022,0.1137797,0.0018468021,0.0003643178,0.17515959,0.00026649548,0.00028823083,0.00852995],"study_design_scores_gemma":[0.000044008393,0.0008566323,0.820559,0.000054281627,0.00011708483,0.1612438,0.0010599041,0.0008294118,0.013534897,0.00013850674,0.0015327324,0.000029685134],"about_ca_topic_score_codex":0.0047640814,"about_ca_topic_score_gemma":0.0055452157,"teacher_disagreement_score":0.0047640814,"about_ca_system_score_codex":0.00069118047,"about_ca_system_score_gemma":0.00020942671,"threshold_uncertainty_score":0.009472728},"labels":[],"label_agreement":null},{"id":"W1997118380","doi":"10.1128/jcm.42.9.4349-4354.2004","title":"Characterization of Avian H3N3 and H1N1 Influenza A Viruses Isolated from Pigs in Canada","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; University of Saskatchewan","funders":"","keywords":"Waterfowl; Virology; Biology; H5N1 genetic structure; Influenza A virus subtype H5N1; Isolation (microbiology); Influenza A virus; Orthomyxoviridae; Virus isolation; Transmission (telecommunications); Virus; Microbiology; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Medicine; Ecology","score_opus":0.0987847657262322,"score_gpt":0.41089171031679494,"score_spread":0.31210694459056276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997118380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972561,0.0003091328,0.00013431937,0.00004359772,0.000010537276,0.000029207025,0.0008098568,0.0000037043221,0.0014035774],"genre_scores_gemma":[0.9933624,0.00063807843,0.00083438156,0.0001715368,0.000010026977,0.000025130266,0.0027898375,0.0000069498974,0.0021615766],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99971586,0.000009115836,0.000010967835,0.00004905159,0.00008936609,0.00012555385],"domain_scores_gemma":[0.9995347,0.00003409025,0.000046075398,0.000010282644,0.00023752316,0.000137286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020835438,0.00038436646,0.00023999877,0.0011825153,0.0021765532,0.00060887623,0.00032208656,0.00034794305,0.0007135325],"category_scores_gemma":[0.0003981231,0.00022872617,0.00029937763,0.0012214041,0.00054980477,0.00016527931,0.00027122907,0.0003858921,0.00022768982],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000536308,0.00013352957,0.70071846,0.00016827177,0.000071525326,0.0015591937,0.0034058697,0.00038747524,0.27741417,0.00021856316,0.00076606096,0.014620592],"study_design_scores_gemma":[0.0000075294765,0.00014554424,0.99135464,0.000017182561,0.000018502604,0.0005424717,0.0013206443,0.00018623722,0.0042796135,0.000012504812,0.0021062777,0.000008860028],"about_ca_topic_score_codex":0.902652,"about_ca_topic_score_gemma":0.95730376,"teacher_disagreement_score":0.097347975,"about_ca_system_score_codex":0.0051199435,"about_ca_system_score_gemma":0.0055945707,"threshold_uncertainty_score":0.1958425},"labels":[],"label_agreement":null},{"id":"W1997356066","doi":"10.1128/jcm.03369-14","title":"Correction for Dufresne et al., Instability of Aspergillus Galactomannan in Stored Clinical Samples","year":2015,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Galactomannan; Aspergillus; Microbiology; Biology; Aspergillosis; Botany","score_opus":0.07200548286887504,"score_gpt":0.39328535134018616,"score_spread":0.3212798684713111,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997356066","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000095504176,0.0019151708,0.0008502171,0.026632981,0.96677166,0.000039353265,0.0012597833,0.00044253032,0.0019927945],"genre_scores_gemma":[0.014515399,0.02139155,0.012163361,0.102656975,0.60245234,0.0005949978,0.008571013,0.0033075633,0.23434676],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942291,0.0009109321,0.0014045319,0.0007352956,0.0023761836,0.00034393233],"domain_scores_gemma":[0.9544013,0.009319201,0.0020383599,0.002577988,0.030305332,0.0013579156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005247999,0.0025103982,0.0018337072,0.0055470546,0.0024375638,0.0042715673,0.003518799,0.0048279963,0.07857165],"category_scores_gemma":[0.069405645,0.0014054987,0.0022531366,0.0022531718,0.002028356,0.0020641643,0.0016531062,0.009485297,0.048878014],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002144574,0.000005392494,0.000051092986,0.0001302722,0.0000069764237,0.000103101374,0.000012575515,0.000018003066,0.00004020275,0.00023770884,0.9935155,0.005857907],"study_design_scores_gemma":[0.000045557594,0.000026220396,0.0010237065,0.0005867715,0.00003192643,0.00089612236,0.00006963823,0.0001623219,0.00032458638,0.0008242458,0.99597615,0.000032789565],"about_ca_topic_score_codex":0.013734941,"about_ca_topic_score_gemma":0.015299075,"teacher_disagreement_score":0.07857165,"about_ca_system_score_codex":0.0034117056,"about_ca_system_score_gemma":0.005074528,"threshold_uncertainty_score":0.26284832},"labels":[],"label_agreement":null},{"id":"W1997915530","doi":"10.1128/jcm.42.4.1626-1630.2004","title":"Reassessment of Sequence-Based Targets for Identification of<i>Bacillus</i>Species","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; TransCanada (Canada); Health Canada","funders":"","keywords":"rpoB; Biology; 16S ribosomal RNA; Cereus; Bacillus anthracis; Ribosomal RNA; Genetics; 23S ribosomal RNA; Sequence analysis; Nucleic acid sequence; Gene; Bacillus cereus; Microbiology; Bacteria; Ribosome; RNA","score_opus":0.07026542212458345,"score_gpt":0.3938919520676185,"score_spread":0.3236265299430351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997915530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9619561,0.0021198844,0.02776904,0.00020763093,0.00013783193,0.00023322234,0.00385878,0.00032705825,0.0033904568],"genre_scores_gemma":[0.8877532,0.001966236,0.09261739,0.00020048357,0.0000590529,0.00025889138,0.013794576,0.00031681123,0.003033331],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824464,0.00045686704,0.00022844115,0.00038550698,0.0004942665,0.00019034695],"domain_scores_gemma":[0.99784696,0.0006176312,0.00049000554,0.0002748425,0.000629413,0.00014128303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013502808,0.00060956896,0.0009011887,0.0016177847,0.0003068071,0.0010583769,0.0005088392,0.0005785964,0.0013949436],"category_scores_gemma":[0.0038236224,0.0003456845,0.00051286933,0.0014077827,0.0002918182,0.0005719711,0.0006388239,0.00070125796,0.0017586732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042725095,0.00010542375,0.0041810125,0.00016646508,0.000017337343,0.000103949686,0.00025716118,0.00017144764,0.97895825,0.00008844377,0.0000936735,0.01542959],"study_design_scores_gemma":[0.000026719412,0.0012650539,0.03159846,0.000110532994,0.00015692972,0.0011636529,0.00048322591,0.0023404679,0.9545295,0.0002093407,0.008081587,0.00003456443],"about_ca_topic_score_codex":0.0006932876,"about_ca_topic_score_gemma":0.0007521534,"teacher_disagreement_score":0.0016177847,"about_ca_system_score_codex":0.0001662189,"about_ca_system_score_gemma":0.00039112012,"threshold_uncertainty_score":0.0071410537},"labels":[],"label_agreement":null},{"id":"W2003627088","doi":"10.1128/jcm.03203-12","title":"Evaluation of an Algorithmic Approach in Comparison with the Illumigene Assay for Laboratory Diagnosis of Clostridium difficile Infection","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Shared Health; Health Sciences Centre","funders":"","keywords":"Clostridium difficile; Algorithm; Glutamate dehydrogenase; Turnaround time; Positive predicative value; Medicine; Predictive value; Clostridium difficile toxin A; Antigen; Microbiology; Biology; Internal medicine; Immunology; Antibiotics; Computer science","score_opus":0.08717043639830238,"score_gpt":0.4074670757847505,"score_spread":0.32029663938644815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003627088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8626872,0.0036590737,0.11920892,0.0014892105,0.00051020324,0.0031614716,0.00038748438,0.00079205085,0.008104454],"genre_scores_gemma":[0.70169365,0.0010895538,0.2931536,0.000863885,0.00025395726,0.0013788383,0.000822203,0.00009156541,0.00065282045],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.966362,0.020333424,0.0029022445,0.0022944023,0.007617003,0.000490907],"domain_scores_gemma":[0.9443247,0.033167582,0.006909386,0.0029358927,0.01184332,0.0008192268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.028991207,0.0009748622,0.0010554513,0.0023652215,0.0004327282,0.0026402299,0.00185101,0.0014186032,0.00092432485],"category_scores_gemma":[0.059909564,0.00051804,0.00083365676,0.0019303041,0.00067945913,0.0016390277,0.0017383695,0.0010363606,0.00033503727],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020806048,0.0029442203,0.3352534,0.0017212558,0.0017980587,0.00033469827,0.0012495555,0.0349324,0.0139341215,0.0034326813,0.0019361783,0.58165735],"study_design_scores_gemma":[0.0056465734,0.04727155,0.36622715,0.0008178863,0.0037735782,0.004190192,0.0013250345,0.52349746,0.024978075,0.0059618596,0.015720814,0.00058981084],"about_ca_topic_score_codex":0.0012679955,"about_ca_topic_score_gemma":0.0026084338,"teacher_disagreement_score":0.028991207,"about_ca_system_score_codex":0.0013390075,"about_ca_system_score_gemma":0.0028331815,"threshold_uncertainty_score":0.15332198},"labels":[],"label_agreement":null},{"id":"W2004649763","doi":"10.1128/jcm.43.8.3704-3712.2005","title":"Genomic Polymorphisms for<i>Mycobacterium avium</i>subsp.<i>paratuberculosis</i>Diagnostics","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Paratuberculosis; Biology; Mycobacterium avium subsp. paratuberculosis; Mycobacterium; Microbiology; Strain (injury); Organism; Virology; Genetics; Bacteria","score_opus":0.04996872935515957,"score_gpt":0.38218168492443,"score_spread":0.33221295556927044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004649763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992007,0.0009024787,0.002568413,0.0001700306,0.00002118382,0.000046343823,0.002844642,0.0000543982,0.0013854816],"genre_scores_gemma":[0.99416405,0.00020525232,0.003389533,0.00014903714,0.000014794156,0.00003567982,0.0017554446,0.000012519935,0.00027368346],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995981,0.00008965569,0.00003757232,0.000103257444,0.000099272926,0.00007222707],"domain_scores_gemma":[0.99914443,0.00029968456,0.00031097422,0.00006225733,0.000111079295,0.00007153471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002628947,0.00025100054,0.00028452987,0.00084751006,0.00019401085,0.00035133676,0.0002777594,0.00063219474,0.0020895328],"category_scores_gemma":[0.0010980273,0.00012661214,0.00036790298,0.000763838,0.00028168366,0.00011504676,0.00016932887,0.00048273493,0.0005698655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090617774,0.00016108573,0.28004795,0.00022105711,0.00012298004,0.001150796,0.00039209684,0.00050851674,0.69252,0.00027143414,0.00067370955,0.023024086],"study_design_scores_gemma":[0.000027415728,0.00060783373,0.86149997,0.00007509772,0.00017104887,0.004725805,0.00037900478,0.001242454,0.12325789,0.00019759497,0.0077949096,0.000020934884],"about_ca_topic_score_codex":0.0014020322,"about_ca_topic_score_gemma":0.0018344355,"teacher_disagreement_score":0.0020895328,"about_ca_system_score_codex":0.00018209573,"about_ca_system_score_gemma":0.00014400121,"threshold_uncertainty_score":0.0069901943},"labels":[],"label_agreement":null},{"id":"W2004786462","doi":"10.1128/jcm.01751-09","title":"Performance of an Agar Dilution Method and a Vitek 2 Card for Detection of Inducible Clindamycin Resistance in <i>Staphylococcus</i> spp","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital Saint-Luc; Hôpital Notre-Dame; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Clindamycin; Microbiology; Agar; Agar dilution; Staphylococcus aureus; Erythromycin; Staphylococcus; Agar plate; Biology; Agar Dilution Method; Agar diffusion test; Bacteria; Antibiotics; Minimum inhibitory concentration","score_opus":0.031157370554649035,"score_gpt":0.3797293553123479,"score_spread":0.3485719847576989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004786462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95700353,0.0033133167,0.0347251,0.00020888366,0.00018261097,0.00059065886,0.0010526892,0.0005122413,0.0024109303],"genre_scores_gemma":[0.90106016,0.0014044364,0.093298495,0.00020526392,0.000052955787,0.00047751516,0.0016271205,0.00006569926,0.0018083685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98907846,0.003923592,0.0012389782,0.0021774669,0.0031427299,0.00043875497],"domain_scores_gemma":[0.99351394,0.002970044,0.0010591287,0.00053778983,0.0014974517,0.0004214962],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0046532983,0.0013156057,0.0013869889,0.0016630238,0.00026577682,0.0010009658,0.0014576772,0.0013019305,0.0013960095],"category_scores_gemma":[0.007219129,0.00079283636,0.0006689245,0.0010835021,0.00070373126,0.00080911606,0.0010077668,0.0007045883,0.0009919442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043885494,0.0009689593,0.084828295,0.000560111,0.00018350645,0.00020177376,0.00040014274,0.000735127,0.848635,0.00012496402,0.0005247857,0.058448642],"study_design_scores_gemma":[0.00027670802,0.011273769,0.21766998,0.00010981049,0.00034428723,0.0030875367,0.0002540424,0.012771565,0.75094664,0.000073796014,0.0029682005,0.00022364795],"about_ca_topic_score_codex":0.0027414672,"about_ca_topic_score_gemma":0.002715006,"teacher_disagreement_score":0.0046532983,"about_ca_system_score_codex":0.0007624152,"about_ca_system_score_gemma":0.0007301122,"threshold_uncertainty_score":0.024609327},"labels":[],"label_agreement":null},{"id":"W2005706645","doi":"10.1128/jcm.03477-13","title":"Sequence-Based Optimization of a Quantitative Real-Time PCR Assay for Detection of Plasmodium ovale and Plasmodium malariae","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; Toronto Public Health; University of Toronto; Public Health Ontario; McMaster University","funders":"","keywords":"Plasmodium ovale; Plasmodium malariae; Virology; Plasmodium (life cycle); Biology; Plasmodium falciparum; Real-time polymerase chain reaction; Malaria; Apicomplexa; Polymerase chain reaction; Protozoal disease; Immunology; Genetics; Plasmodium vivax; Gene; Parasite hosting; Computer science","score_opus":0.05634749118632627,"score_gpt":0.37183412640917646,"score_spread":0.3154866352228502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005706645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5216876,0.0016075737,0.47194245,0.00026323606,0.00021410942,0.0011777743,0.00090770464,0.0008291503,0.0013703598],"genre_scores_gemma":[0.35275882,0.00073164096,0.64066625,0.00026234737,0.000045458026,0.0014063691,0.0021245976,0.00015947159,0.0018450859],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995095,0.0013828811,0.0005348802,0.0011921118,0.0014913966,0.000303813],"domain_scores_gemma":[0.9980743,0.0007612201,0.00031518447,0.00016076017,0.0005922748,0.00009625829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035860639,0.0012370427,0.0013866501,0.00081318914,0.0003773959,0.0008042633,0.0010016622,0.0009328515,0.0006518724],"category_scores_gemma":[0.0040446375,0.0010111897,0.0009195716,0.0005994239,0.0008348835,0.0006423288,0.00049632136,0.001078094,0.0005890881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014691122,0.00007430019,0.00082267047,0.00009629474,0.0000113951055,0.000036011894,0.00006490789,0.0018965673,0.99273247,0.00013947423,0.000058306978,0.0039208205],"study_design_scores_gemma":[0.000045484903,0.00081605604,0.0041820975,0.000030263263,0.00006661909,0.00029702115,0.00007034835,0.046104126,0.9440318,0.00019969697,0.0040841345,0.00007243051],"about_ca_topic_score_codex":0.0007181242,"about_ca_topic_score_gemma":0.0020694449,"teacher_disagreement_score":0.0035860639,"about_ca_system_score_codex":0.00067611405,"about_ca_system_score_gemma":0.0009030531,"threshold_uncertainty_score":0.018965185},"labels":[],"label_agreement":null},{"id":"W2006354976","doi":"10.1128/jcm.39.9.3422.2001","title":"Evaluation of a New Medium, Oxacillin Resistance Screening Agar Base, for the Detection of Methicillin-Resistant <b> <i>Staphylococcus aureus</i> from Clinical Specimens </b>","year":2001,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Systems, Applications & Products in Data Processing (Canada); Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Micrococcaceae; Meticillin; Staphylococcal infections; Incidence (geometry); Agar; Medicine; Antibiotics; Antibacterial agent; Biology; Bacteria","score_opus":0.1532071646549569,"score_gpt":0.41049143847470726,"score_spread":0.2572842738197504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006354976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9593919,0.01377407,0.02090417,0.00040967844,0.000202676,0.0016553059,0.00079381105,0.00020700796,0.0026614568],"genre_scores_gemma":[0.86227185,0.010776645,0.11867619,0.00021697322,0.0001570672,0.0007098724,0.004150814,0.000089297944,0.0029513435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970221,0.00093954615,0.00035787906,0.0003130011,0.0012408523,0.00012666969],"domain_scores_gemma":[0.99813485,0.0005937393,0.00038022807,0.00012147245,0.00046638746,0.00030317603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015566079,0.0010824982,0.0006852474,0.0012039567,0.0003691539,0.00085803843,0.0011609193,0.0009368637,0.0011585525],"category_scores_gemma":[0.0018269959,0.00030785194,0.00040235,0.0006011666,0.0005438837,0.0007288439,0.0008586736,0.00071984064,0.0006422609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008843528,0.0010142239,0.005202713,0.00039476316,0.000028733615,0.00022731668,0.00009368661,0.00009995045,0.97724175,0.00007609227,0.00015410838,0.014582286],"study_design_scores_gemma":[0.00016723413,0.014720071,0.025827233,0.000105621715,0.00020766765,0.0045364066,0.00017120372,0.0014202583,0.9456952,0.000039655504,0.007042727,0.00006672299],"about_ca_topic_score_codex":0.0016632836,"about_ca_topic_score_gemma":0.0025922921,"teacher_disagreement_score":0.0016632836,"about_ca_system_score_codex":0.00037438283,"about_ca_system_score_gemma":0.0009353186,"threshold_uncertainty_score":0.008232236},"labels":[],"label_agreement":null},{"id":"W2006862836","doi":"10.1128/jcm.02160-12","title":"Legionella micdadei Brain Abscess","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Legionella; Brain abscess; Abscess; Medicine; Microbiology; Central nervous system; Pathology; Biology; Bacteria; Surgery; Internal medicine","score_opus":0.053888086015123696,"score_gpt":0.40302512612856517,"score_spread":0.3491370401134415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006862836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798288,0.002051,0.0019503174,0.00203013,0.00024289134,0.00010221042,0.0001320688,0.00012240642,0.013540261],"genre_scores_gemma":[0.99702954,0.0007329557,0.0006320043,0.00059967156,0.0002745532,0.000011224007,0.000036065507,0.000011015892,0.0006730144],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99965274,0.000042985823,0.00003308163,0.000079038684,0.000050972503,0.00014111295],"domain_scores_gemma":[0.99847,0.0006064623,0.00026939536,0.0001358814,0.000079527395,0.00043874726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002722966,0.0020879286,0.000778518,0.0009324427,0.0023694886,0.0016049745,0.0005428088,0.0026294433,0.0019826083],"category_scores_gemma":[0.0031667256,0.0007434499,0.0005478259,0.00046087118,0.0013757527,0.0015187076,0.000985866,0.002512289,0.00062430394],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000676079,0.00008202187,0.009857712,0.000025238782,0.0000067585365,0.98689634,0.00020266001,0.000052384523,0.00092179974,0.00014559002,0.00021438567,0.0015274498],"study_design_scores_gemma":[0.000019596764,0.00012712063,0.004594399,0.000017156131,0.000011894227,0.9935655,0.00017294243,0.00018323798,0.0006321439,0.00014396031,0.00052198145,0.000010019152],"about_ca_topic_score_codex":0.0013200961,"about_ca_topic_score_gemma":0.0018811102,"teacher_disagreement_score":0.0026294433,"about_ca_system_score_codex":0.0007613389,"about_ca_system_score_gemma":0.000700429,"threshold_uncertainty_score":0.0066324472},"labels":[],"label_agreement":null},{"id":"W2006945921","doi":"10.1128/jcm.00758-12","title":"Duration of Hospital Admission and the Need for Empirical Antipseudomonal Therapy","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nosocomial Infections in ICU","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Hospital; University of Toronto; Institute for Clinical Evaluative Sciences; Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Odds ratio; Confidence interval; Pseudomonas aeruginosa; Internal medicine; Retrospective cohort study; Logistic regression; Antibiotics; Microbiology; Biology; Bacteria","score_opus":0.0850468587784161,"score_gpt":0.44885832440785217,"score_spread":0.36381146562943606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006945921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99554104,0.0020646683,0.0001908412,0.00039894425,0.000045955418,0.000010125533,0.0004912682,0.000009912402,0.0012471463],"genre_scores_gemma":[0.9989587,0.00038927933,0.00009315225,0.000053264317,0.000062980274,0.000006461985,0.00027655112,0.0000041181092,0.0001554239],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99868304,0.00032292647,0.00026774633,0.00016275003,0.0003068486,0.00025674593],"domain_scores_gemma":[0.9842694,0.002869631,0.008910883,0.00045489753,0.0006896003,0.0028055925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011130107,0.00023375083,0.0004922091,0.00073902233,0.00048282626,0.0009739394,0.00063641317,0.00059056067,0.0048471894],"category_scores_gemma":[0.014364812,0.00026696792,0.0009334058,0.0009967022,0.00039414913,0.00089427776,0.0007706158,0.0015376799,0.0003155798],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026182306,0.000026412343,0.99795014,0.000020088506,0.000064183005,0.00014364051,0.0000408139,0.00006752692,0.00010448566,0.000017243266,0.0000738251,0.0012297203],"study_design_scores_gemma":[0.0000074301824,0.00012702493,0.99857366,0.000031005893,0.000025015219,0.00066537573,0.00012455948,0.00023865738,0.000026594198,0.00002322323,0.0001514862,0.0000059206495],"about_ca_topic_score_codex":0.004470294,"about_ca_topic_score_gemma":0.0047305194,"teacher_disagreement_score":0.0048471894,"about_ca_system_score_codex":0.00086131954,"about_ca_system_score_gemma":0.001159079,"threshold_uncertainty_score":0.016215503},"labels":[],"label_agreement":null},{"id":"W2007304389","doi":"10.1128/jcm.44.3.1123-1126.2006","title":"Identification of Human H1N2 and Human-Swine Reassortant H1N2 and H1N1 Influenza A Viruses among Pigs in Ontario, Canada (2003 to 2005)","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Virology; Biology; Human influenza; H5N1 genetic structure; Virus; Influenza A virus; Genotype; Gene; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty); Genetics; Medicine","score_opus":0.08985535868809491,"score_gpt":0.42503173102744823,"score_spread":0.3351763723393533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2007304389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962063,0.0004940216,0.00018485842,0.00010270021,0.0000122882,0.000046455967,0.0009276001,0.000009095303,0.002016727],"genre_scores_gemma":[0.9963081,0.00045706288,0.00036710294,0.00015610945,0.000008724541,0.000016668466,0.00095554476,0.0000039119686,0.0017269396],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997116,0.000012459864,0.000008604948,0.00004811227,0.0001138995,0.00010535428],"domain_scores_gemma":[0.99966455,0.000014933378,0.000041296527,0.000015846656,0.00015456328,0.00010881565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002468706,0.00021516165,0.0001858155,0.0007363875,0.0020095664,0.00068243785,0.00032285607,0.00038929834,0.0008499346],"category_scores_gemma":[0.00034223945,0.00022810702,0.00023213704,0.00085612136,0.00056016137,0.00014102057,0.00031631565,0.00031612965,0.00018644679],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029849878,0.000047700676,0.9592554,0.000055358665,0.000046841047,0.001279074,0.002620428,0.0001656005,0.023429943,0.00010126422,0.0015419833,0.011157889],"study_design_scores_gemma":[0.0000070727865,0.00006534217,0.9955713,0.000011980539,0.00001324579,0.000568306,0.0008824226,0.00010285639,0.00070832326,0.000010492902,0.0020509094,0.000007849278],"about_ca_topic_score_codex":0.9610721,"about_ca_topic_score_gemma":0.9842981,"teacher_disagreement_score":0.038927913,"about_ca_system_score_codex":0.008007997,"about_ca_system_score_gemma":0.007992723,"threshold_uncertainty_score":0.078314304},"labels":[],"label_agreement":null},{"id":"W2008349076","doi":"10.1128/jcm.00051-14","title":"Genetic Diversity and Evolution of Salmonella enterica Serovar Enteritidis Strains with Different Phage Types","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Public Health Agency of Canada","funders":"","keywords":"Biology; Clade; Genetics; Salmonella enteritidis; Phylogenetic tree; Phylogenetics; Phage typing; Typing; Genetic diversity; Evolutionary biology; Salmonella; Gene; Population","score_opus":0.017260179820626286,"score_gpt":0.26767669031814045,"score_spread":0.2504165104975142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008349076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996209,0.00005023859,0.00013391567,0.0000042731112,7.281069e-7,0.0000025651325,0.00007031922,0.0000019152792,0.00011512105],"genre_scores_gemma":[0.9989773,0.000049062353,0.00051105575,0.000012381916,0.0000015752503,0.000005406607,0.00034758265,0.000002711552,0.00009298844],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996506,0.00006490219,0.000037899055,0.00013643679,0.000056101195,0.000053998832],"domain_scores_gemma":[0.99939024,0.00015474398,0.00022551692,0.00004983394,0.000090931906,0.00008869511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004376021,0.00026554734,0.00024000634,0.0012211086,0.0002692108,0.00042547227,0.00015135133,0.00035052715,0.0002977895],"category_scores_gemma":[0.0006850721,0.00020457887,0.00031037428,0.00079534104,0.0002633877,0.00016965566,0.00035166365,0.00035894307,0.00013747362],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006143883,0.00015643769,0.4994293,0.0000631767,0.00016223443,0.000223736,0.00085065985,0.00096228626,0.4865685,0.0001320288,0.000058197835,0.010778991],"study_design_scores_gemma":[0.0000039067113,0.00014669014,0.99440765,0.0000073525616,0.000032568707,0.00031187176,0.00023298447,0.0008300642,0.0037845364,0.00003822571,0.00019754985,0.0000067923334],"about_ca_topic_score_codex":0.0011030214,"about_ca_topic_score_gemma":0.0018038318,"teacher_disagreement_score":0.0012211086,"about_ca_system_score_codex":0.00017036113,"about_ca_system_score_gemma":0.00015434423,"threshold_uncertainty_score":0.0023142695},"labels":[],"label_agreement":null},{"id":"W2009590146","doi":"10.1128/jcm.00792-14","title":"Extended Characterization of Corynebacterium pyruviciproducens Based on Clinical Strains from Canada and Switzerland","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"16S ribosomal RNA; Microbiology; Strain (injury); Biology; Identification (biology); Clinical microbiology; Ribosomal RNA; Matrix-assisted laser desorption/ionization; Corynebacterium; Computational biology; Bacteria; Genetics; Gene; Chemistry","score_opus":0.019559987785187197,"score_gpt":0.2975514618822172,"score_spread":0.27799147409703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009590146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99502313,0.00084829994,0.0006276695,0.00011650216,0.000020786441,0.00017336238,0.0018573783,0.000022284905,0.0013107181],"genre_scores_gemma":[0.9903019,0.0011525011,0.0018666119,0.00009139702,0.000025767573,0.000051329844,0.0052296533,0.000022025863,0.0012588538],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999246,0.00004419338,0.00007986049,0.00015170965,0.0003110459,0.00016733499],"domain_scores_gemma":[0.999113,0.00007568719,0.00009982671,0.000030227286,0.000503707,0.00017754284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030781789,0.0007611731,0.00077538437,0.0015965991,0.0007588645,0.00094460195,0.00039177726,0.00037553988,0.00088754785],"category_scores_gemma":[0.0011135982,0.00021983514,0.0004055761,0.0019404108,0.00036121055,0.00018212767,0.00076525146,0.00035602652,0.000308976],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010394899,0.00025374955,0.1932101,0.00040406504,0.00007917364,0.0038178442,0.0025684047,0.00037779124,0.7733569,0.00010639368,0.0005457719,0.024240294],"study_design_scores_gemma":[0.00007083543,0.0011145087,0.8570893,0.00013207046,0.00023080662,0.007813611,0.004637509,0.00067731435,0.11851352,0.000055056626,0.009597158,0.000068320136],"about_ca_topic_score_codex":0.25277328,"about_ca_topic_score_gemma":0.22422896,"teacher_disagreement_score":0.7472267,"about_ca_system_score_codex":0.00096236926,"about_ca_system_score_gemma":0.003106029,"threshold_uncertainty_score":0.50260395},"labels":[],"label_agreement":null},{"id":"W2011174961","doi":"10.1128/jcm.00307-13","title":"Molecular and Antimicrobial Susceptibility Analyses Distinguish Clinical from Bovine Escherichia coli O157 Strains","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Manitoba Health; Saskatchewan Disease Control Laboratory; University of Saskatchewan","funders":"Health Canada; Public Health Agency of Canada","keywords":"Biology; Virulence; Microbiology; Escherichia coli; Colicin; Population; Genotype; Genetics; Tetracycline; Molecular epidemiology; Lineage (genetic); Antibiotic resistance; Antimicrobial; Gene; Antibiotics","score_opus":0.0681446190528189,"score_gpt":0.4219180880845696,"score_spread":0.35377346903175066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011174961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99973744,0.000044670098,0.00008156537,0.0000038004323,5.9581515e-7,0.0000032241917,0.00004986799,8.573825e-7,0.000077969664],"genre_scores_gemma":[0.9993082,0.000064470354,0.00020047656,0.000013377799,0.0000018631272,0.0000033860488,0.00026296516,0.0000011264393,0.00014413809],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995165,0.00010049146,0.00002929297,0.00015045037,0.00009556461,0.00010767894],"domain_scores_gemma":[0.9993622,0.00011682299,0.00014638918,0.000056711604,0.00018832216,0.00012954652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005587435,0.00029366638,0.00020068762,0.0008090995,0.00033441055,0.0004621941,0.00024154256,0.00037071423,0.00071999425],"category_scores_gemma":[0.0011247264,0.00025725676,0.00014353894,0.0007658026,0.00042855862,0.0001494329,0.00029191253,0.00030512427,0.00016075921],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018688917,0.00007511251,0.9808065,0.000008561466,0.000029768904,0.00009769816,0.00029397363,0.000054010263,0.01591156,0.000020002142,0.000046941175,0.002469],"study_design_scores_gemma":[0.000005499988,0.00016642021,0.9984029,0.0000039596157,0.000011733844,0.00035414158,0.00023491717,0.000120152275,0.00055575627,0.000010989905,0.00013070297,0.0000029037708],"about_ca_topic_score_codex":0.04456225,"about_ca_topic_score_gemma":0.07292235,"teacher_disagreement_score":0.04456225,"about_ca_system_score_codex":0.0006767472,"about_ca_system_score_gemma":0.00048797944,"threshold_uncertainty_score":0.08860576},"labels":[],"label_agreement":null},{"id":"W2011810928","doi":"10.1128/jcm.00505-14","title":"Emergence of New CMRSA7/USA400 Methicillin-Resistant Staphylococcus aureus <i>spa</i> Types in Alberta, Canada, from 2005 to 2012","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Public Health Agency of Canada; Health Canada; Ministry of Health; University of Alberta; Provincial Laboratory of Public Health","funders":"Alberta Health Services","keywords":"Staphylococcus aureus; Multilocus sequence typing; Epidemiology; Methicillin-resistant Staphylococcus aureus; Mupirocin; clone (Java method); Staphylococcal Skin Infections; Staphylococcal infections; Pulsed-field gel electrophoresis; Antibiotic resistance; Molecular epidemiology; Public health; Medicine; Microbiology; Drug resistance; Typing; Biology; Antibiotics; Internal medicine; Genotype; Bacteria; Pathology","score_opus":0.031588619987421664,"score_gpt":0.33966891912413366,"score_spread":0.308080299136712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011810928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994951,0.0009987897,0.0002265516,0.00030080695,0.000023595107,0.000046735873,0.001073816,0.0000255922,0.0023530035],"genre_scores_gemma":[0.99436176,0.0011362303,0.0007740434,0.00039041886,0.000017811471,0.000014649778,0.0015205413,0.000010619801,0.0017739433],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99923325,0.000029961471,0.00002297804,0.000090453126,0.00042115446,0.00020218642],"domain_scores_gemma":[0.99851066,0.0000442369,0.00019384414,0.000026569807,0.0008322996,0.00039231547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005633386,0.00048440887,0.00026186157,0.0020133178,0.0015752675,0.0014091322,0.0009868146,0.00052756234,0.00070509943],"category_scores_gemma":[0.000987959,0.0003540402,0.00045160195,0.0024175777,0.00071618013,0.00024652132,0.00059073913,0.0006027386,0.00011841566],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030035264,0.000079165104,0.9631873,0.00008041975,0.000056429213,0.0017020325,0.0015759101,0.0005340084,0.0057489714,0.00020876969,0.0020243165,0.024502408],"study_design_scores_gemma":[0.000009888689,0.00004754481,0.99493694,0.000034861736,0.000017065538,0.00045980187,0.0013690817,0.0004594043,0.00035197844,0.000023927036,0.002273634,0.000015828518],"about_ca_topic_score_codex":0.98528844,"about_ca_topic_score_gemma":0.9917579,"teacher_disagreement_score":0.021067118,"about_ca_system_score_codex":0.021067118,"about_ca_system_score_gemma":0.029013054,"threshold_uncertainty_score":0.15285337},"labels":[],"label_agreement":null},{"id":"W2012250194","doi":"10.1128/jcm.05471-11","title":"Use of Quantitative HIV RNA Detection for Early Diagnosis of HIV Infection in Infants and Acute HIV Infections in Alberta, Canada","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Public Health Agency of Canada; University of Calgary; University of Alberta","funders":"","keywords":"Human immunodeficiency virus (HIV); Virology; Viral load; Viral disease; Medicine; Sida; Immunology; Lentivirus; Biology","score_opus":0.0677086040063242,"score_gpt":0.3504010614838271,"score_spread":0.28269245747750293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012250194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96866,0.009283083,0.0023887597,0.0017736185,0.000116336996,0.0002648377,0.0011830903,0.00013137877,0.016199058],"genre_scores_gemma":[0.99096936,0.002785164,0.0032606802,0.0003569274,0.00001944991,0.000040200885,0.00029471837,0.0000118409935,0.0022615823],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894685,0.00020330273,0.00006535545,0.00007512652,0.0005113219,0.00019806119],"domain_scores_gemma":[0.99797374,0.00029786513,0.0001557993,0.000028108576,0.0011965825,0.00034788315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012653429,0.00032615333,0.00024331427,0.0010943683,0.0014088034,0.00086341816,0.00095623743,0.00029233252,0.0009293965],"category_scores_gemma":[0.0025386019,0.00027325493,0.0001507957,0.0010234499,0.000533176,0.00017802959,0.00040480995,0.0004952224,0.00011184458],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040924104,0.0001692065,0.899619,0.00024948717,0.000041389467,0.0015103089,0.0012076809,0.0009826736,0.0034946757,0.0005924622,0.0037946263,0.08792931],"study_design_scores_gemma":[0.000046826277,0.00016949758,0.98818445,0.00019917982,0.000044869448,0.00091441366,0.0016985625,0.002308743,0.0014511162,0.00009488297,0.004858545,0.000028814298],"about_ca_topic_score_codex":0.98877084,"about_ca_topic_score_gemma":0.9936434,"teacher_disagreement_score":0.018045243,"about_ca_system_score_codex":0.018045243,"about_ca_system_score_gemma":0.029685909,"threshold_uncertainty_score":0.13092804},"labels":[],"label_agreement":null},{"id":"W2012405329","doi":"10.1128/jcm.39.2.733-737.2001","title":"Surveillance of Invasive <i>Streptococcus pneumoniae</i> Infection in the Province of Quebec, Canada, from 1996 to 1998: Serotype Distribution, Antimicrobial Susceptibility, and Clinical Characteristics","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Hôpital Saint-Luc; Centre Integre de Sante et de Services Sociaux de Laval; Royal Victoria Regional Health Centre; Université de Sherbrooke; Institut National de Santé Publique du Québec","funders":"University of Alberta","keywords":"Streptococcus pneumoniae; Serotype; Penicillin; Microbiology; Antimicrobial; Antibiotics; Pneumococcal infections; Antibiotic resistance; Conjugate vaccine; Biology; Cephalosporin; Virology; Medicine","score_opus":0.023289407287700715,"score_gpt":0.32736678200510333,"score_spread":0.3040773747174026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012405329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879752,0.0024698551,0.00031675314,0.00036995925,0.00001860357,0.00008217185,0.006404307,0.000031675387,0.0023313898],"genre_scores_gemma":[0.99502844,0.0008925208,0.0003628483,0.0001672316,0.000008796612,0.00002142102,0.0023020466,0.0000040786895,0.0012127378],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993699,0.00004229931,0.000045784203,0.00009713123,0.00027158327,0.00017331722],"domain_scores_gemma":[0.997607,0.00008579642,0.00045662554,0.00003280378,0.0014154378,0.00040223496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005453138,0.00045074182,0.00037208764,0.001093907,0.0012362589,0.00078845856,0.0010543108,0.00039962013,0.0008795727],"category_scores_gemma":[0.0015974324,0.00022811898,0.00023019507,0.0024602003,0.0005483117,0.0003347863,0.00034251396,0.00045794083,0.0001583465],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009318728,0.000031731357,0.98747045,0.00007245413,0.00003636544,0.00023119172,0.0004169265,0.00023251242,0.0008831701,0.000025406278,0.0016211091,0.008885534],"study_design_scores_gemma":[0.0000074759782,0.000050080398,0.99734986,0.000041092364,0.000016285354,0.00016414013,0.00040248618,0.00028789585,0.00020570651,0.0000050588087,0.0014623792,0.0000075044154],"about_ca_topic_score_codex":0.9924711,"about_ca_topic_score_gemma":0.9937499,"teacher_disagreement_score":0.017159667,"about_ca_system_score_codex":0.017159667,"about_ca_system_score_gemma":0.015045688,"threshold_uncertainty_score":0.12450272},"labels":[],"label_agreement":null},{"id":"W2013022686","doi":"10.1128/jcm.02207-13","title":"Reply to “Issues on Results of the External Quality Assessment for Proviral DNA Testing of HIV-1 Tropism in the Maraviroc Switch Collaborative Study”","year":2013,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"","keywords":"Maraviroc; Virology; Tropism; Human immunodeficiency virus (HIV); CCR5 receptor antagonist; External quality assessment; Tissue tropism; Computational biology; DNA; Preclinical testing; Biology; Quality (philosophy); Medicine; Virus; Genetics; Bioinformatics; Pathology; Physics","score_opus":0.11106551693121901,"score_gpt":0.44403599310493413,"score_spread":0.3329704761737151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013022686","genre_codex":"commentary","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00051525945,0.001526039,0.00051832845,0.9080516,0.08854485,0.000072548704,0.0001621408,0.00013521736,0.00047404956],"genre_scores_gemma":[0.0018726855,0.0003939587,0.0005629464,0.9561187,0.039886963,0.00009883759,0.000035199035,0.000047857266,0.0009828003],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9770849,0.008665651,0.0045394935,0.0025700866,0.005630335,0.001509636],"domain_scores_gemma":[0.8893579,0.058432944,0.008849271,0.0040213545,0.03382171,0.005516868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.037597556,0.0015709462,0.0023056879,0.0016200707,0.003211643,0.004440276,0.00495576,0.043396365,0.004712797],"category_scores_gemma":[0.17964217,0.0016326918,0.0027095876,0.0015411664,0.0052855616,0.0046267393,0.0032192587,0.040741842,0.0053021563],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010137249,0.000030474313,0.000857586,0.00015915647,0.000048156588,0.0004988075,0.00022915604,0.000047013596,0.00011951424,0.0005650694,0.99313146,0.004212134],"study_design_scores_gemma":[0.0002646561,0.00016978872,0.004608198,0.0011657769,0.00015661628,0.0018344057,0.0009866114,0.0007384016,0.0010812157,0.0035984577,0.98511755,0.00027842572],"about_ca_topic_score_codex":0.0075821015,"about_ca_topic_score_gemma":0.0070260693,"teacher_disagreement_score":0.043396365,"about_ca_system_score_codex":0.0048232377,"about_ca_system_score_gemma":0.0054131453,"threshold_uncertainty_score":0.19883722},"labels":[],"label_agreement":null},{"id":"W2013060525","doi":"10.1128/jcm.01117-07","title":"Evidence from Multiplex Molecular Assays for Complex Multipathogen Interactions in Acute Respiratory Infections","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia","funders":"National Parks and Wildlife Service","keywords":"Respiratory tract infections; Context (archaeology); Molecular diagnostics; Multiplex; Biology; Respiratory tract; Multiplex polymerase chain reaction; Infectious agent; Pathogen; Immunology; Respiratory system; Intensive care medicine; Virology; Medicine; Bioinformatics; Pathology; Polymerase chain reaction; Internal medicine; Disease; Gene","score_opus":0.3144485358903038,"score_gpt":0.5439300039921848,"score_spread":0.22948146810188103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013060525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98440844,0.0021754003,0.010341629,0.00013500277,0.000054436092,0.000080729624,0.00031662258,0.00008135682,0.002406345],"genre_scores_gemma":[0.9925884,0.0003086328,0.0064662877,0.00007091246,0.00003633686,0.00002986299,0.00017713623,0.0000053880585,0.0003170006],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9957366,0.0013488004,0.00049436535,0.0006440294,0.0013901382,0.00038604453],"domain_scores_gemma":[0.9900046,0.0050062537,0.0027687028,0.00082652085,0.00093588594,0.00045810247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00292345,0.0008349268,0.00035887034,0.0017102357,0.00043653388,0.0010475268,0.0004703523,0.0007007913,0.0023510063],"category_scores_gemma":[0.006455279,0.00047319845,0.00028459312,0.0009322127,0.0007201796,0.00065566914,0.0008751683,0.00077843457,0.00062028336],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002352254,0.00059184403,0.4127137,0.0004432352,0.00030157086,0.0016756143,0.000539011,0.0007912086,0.5497501,0.0008340276,0.0007248825,0.029282514],"study_design_scores_gemma":[0.00009970821,0.00301087,0.59237033,0.00012388763,0.00039404313,0.021564553,0.0006201226,0.009186936,0.36562422,0.0013951961,0.005524751,0.00008533353],"about_ca_topic_score_codex":0.0003215665,"about_ca_topic_score_gemma":0.00031292383,"teacher_disagreement_score":0.00292345,"about_ca_system_score_codex":0.00021674669,"about_ca_system_score_gemma":0.00019558311,"threshold_uncertainty_score":0.015460849},"labels":[],"label_agreement":null},{"id":"W2013526400","doi":"10.1128/jcm.02601-05","title":"Longitudinal Analysis of Genotype Distribution of Influenza A Virus from 2003 to 2005","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of British Columbia; BC Centre for Disease Control","funders":"Michael Smith Health Research BC","keywords":"Virology; Genotype; Orthomyxoviridae; Virus; Biology; Influenza A virus; Genetics; Gene","score_opus":0.1140982175817455,"score_gpt":0.4578114273824318,"score_spread":0.3437132098006863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013526400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990854,0.00012139117,0.00011620236,0.000024336974,0.0000046053783,0.0000051610364,0.00041706298,0.0000066357047,0.00021909046],"genre_scores_gemma":[0.998591,0.000061322935,0.00016820802,0.000024724328,0.000004443015,0.0000074313034,0.0008889023,0.0000020453886,0.00025202395],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999754,0.00005427538,0.000019836976,0.000067935136,0.00004575321,0.000058276655],"domain_scores_gemma":[0.9987471,0.00011719406,0.00042892384,0.000089191664,0.00040020287,0.00021739995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005815679,0.00012830453,0.0001871266,0.00068194274,0.00040945248,0.00033912572,0.00017576283,0.00030926132,0.00043974],"category_scores_gemma":[0.0016087329,0.00014140784,0.00018073386,0.00043566525,0.00010816419,0.00027521115,0.00019792625,0.00038088538,0.00023976916],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012081901,0.000038209157,0.9949303,0.000004398382,0.000027164466,0.000031983822,0.0001250445,0.000049339913,0.0013585984,0.000010674118,0.00019141017,0.0031119883],"study_design_scores_gemma":[0.0000016634594,0.000099430836,0.9990754,0.0000032824178,0.0000093051385,0.000114356364,0.00009031773,0.00015704159,0.00022234577,0.000006479489,0.00021735966,0.0000030453323],"about_ca_topic_score_codex":0.010740654,"about_ca_topic_score_gemma":0.014363071,"teacher_disagreement_score":0.010740654,"about_ca_system_score_codex":0.00041738144,"about_ca_system_score_gemma":0.0002649682,"threshold_uncertainty_score":0.021356285},"labels":[],"label_agreement":null},{"id":"W2013910995","doi":"10.1128/jcm.01125-07","title":"Isolation and Genetic Characterization of a Coinfection of Non-O157 Shiga Toxin-Producing <i>Escherichia coli</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Public Health Agency of Canada","funders":"","keywords":"Microbiology; Virulence; Serotype; Coinfection; Biology; Escherichia coli; Shiga toxin; Virology; Typing; Diarrhea; STX2; Genetics; Gene; Medicine; Virus","score_opus":0.019169092583059922,"score_gpt":0.33706107491436815,"score_spread":0.3178919823313082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013910995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99956065,0.000051196574,0.00015180217,0.000012860554,0.0000022432764,0.000009822629,0.000039855473,0.0000023290463,0.0001691942],"genre_scores_gemma":[0.99872714,0.00008043822,0.00062123116,0.00004502538,0.000006007622,0.000011914359,0.00027602047,0.0000060009797,0.0002263335],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999703,0.000032920827,0.000023207094,0.00006989961,0.00008796973,0.00008302177],"domain_scores_gemma":[0.9996611,0.00009359563,0.00006396255,0.0000386732,0.000047289497,0.00009538058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016369259,0.0003733268,0.00033351302,0.0003991739,0.00041100642,0.00037467558,0.0001981861,0.0003730957,0.00095995225],"category_scores_gemma":[0.0006487095,0.00020101412,0.00023447494,0.00024678235,0.00033071596,0.00018953063,0.00042104977,0.00033742184,0.00027277807],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004686081,0.0003151855,0.14852938,0.000056379966,0.000031655323,0.008528313,0.00057254004,0.00005743814,0.8374164,0.00021032714,0.00010861751,0.0037051484],"study_design_scores_gemma":[0.000063979984,0.0019845336,0.7737425,0.0000334323,0.00011130589,0.05617283,0.001700853,0.0009710407,0.16325961,0.00011099298,0.0018247046,0.00002426427],"about_ca_topic_score_codex":0.0017751948,"about_ca_topic_score_gemma":0.001954756,"teacher_disagreement_score":0.0017751948,"about_ca_system_score_codex":0.0002292139,"about_ca_system_score_gemma":0.0002732956,"threshold_uncertainty_score":0.0035297275},"labels":[],"label_agreement":null},{"id":"W2014370501","doi":"10.1128/jcm.40.3.1080-1082.2002","title":"Monoclonal Antibodies Specific for Hippurate Hydrolase of <i>Campylobacter jejuni</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Guelph","funders":"","keywords":"Monoclonal antibody; Campylobacter; Campylobacter jejuni; Microbiology; Antibody; Monoclonal; Biology; Virology; Medicine; Immunology; Bacteria","score_opus":0.12042835898122702,"score_gpt":0.3244389588873932,"score_spread":0.2040105999061662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014370501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96878517,0.0036349592,0.015720015,0.00038548707,0.0002217685,0.0003037067,0.0005538154,0.00032464272,0.010070601],"genre_scores_gemma":[0.95865816,0.003198382,0.02140331,0.0005711378,0.00012666419,0.00038870497,0.0037337157,0.000048978774,0.011870931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995072,0.000050533567,0.00004422833,0.00011683325,0.00010554925,0.00017568581],"domain_scores_gemma":[0.99935395,0.00017578674,0.00007859757,0.00004651115,0.00024380865,0.000101323814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044126515,0.0007141457,0.00034038795,0.0005766362,0.00035245894,0.0003404081,0.0006004162,0.00081738085,0.005967073],"category_scores_gemma":[0.0006837076,0.00034610133,0.00041272733,0.00034800556,0.00026492044,0.0002524569,0.0003338391,0.00071888836,0.0010818482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016614156,0.00009886264,0.0022900645,0.00013425408,0.00002803401,0.00010314655,0.000040471627,0.00005898203,0.99001545,0.00014054377,0.0005233643,0.006400492],"study_design_scores_gemma":[0.00025092377,0.0033290111,0.057724446,0.00016859791,0.00039210767,0.0031201076,0.00026165353,0.0015680337,0.9059347,0.00040218644,0.026805783,0.00004258942],"about_ca_topic_score_codex":0.0011691821,"about_ca_topic_score_gemma":0.0024535367,"teacher_disagreement_score":0.005967073,"about_ca_system_score_codex":0.00057643367,"about_ca_system_score_gemma":0.00022285641,"threshold_uncertainty_score":0.019961894},"labels":[],"label_agreement":null},{"id":"W2014429132","doi":"10.1128/jcm.01894-14","title":"Evaluation of Anatomically Designed Flocked Rectal Swabs for Molecular Detection of Enteric Pathogens in Children Admitted to Hospital with Severe Gastroenteritis in Botswana","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Grand Challenges Canada; Center for AIDS Research, University of Washington; University of Pennsylvania","keywords":"Diarrhea; Medicine; Multiplex; Feces; Virology; Acute gastroenteritis; Internal medicine; Veterinary medicine; Microbiology; Biology; Bioinformatics","score_opus":0.023925621366523844,"score_gpt":0.35587360615430613,"score_spread":0.3319479847877823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014429132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995691,0.000093563634,0.00013405374,0.000015019057,0.000004555509,0.000032015607,0.000057675323,0.000004030395,0.00008997995],"genre_scores_gemma":[0.9976426,0.00016071976,0.0018557004,0.000048268972,0.0000031940572,0.000036847807,0.00016135772,0.0000031524498,0.00008810781],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99884015,0.00036717753,0.00015295732,0.00016868298,0.00032674827,0.00014423294],"domain_scores_gemma":[0.99841785,0.00049139553,0.00051286496,0.00005828519,0.00034920924,0.00017039434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00111077,0.0005612634,0.00033322445,0.000849117,0.0002971069,0.0005414816,0.0003942624,0.00038998976,0.00037885056],"category_scores_gemma":[0.0042271554,0.00053611334,0.0002576738,0.00067296636,0.0005262656,0.00029716894,0.00048184194,0.00031536203,0.00011822589],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059394847,0.00012716581,0.9325308,0.00019331828,0.000048824477,0.0012912768,0.0021391232,0.00018702952,0.053029764,0.000019577163,0.00008343627,0.009755583],"study_design_scores_gemma":[0.000027048623,0.0014251783,0.9888997,0.00003654517,0.000037660924,0.0018200697,0.001894237,0.00034704668,0.0051798746,0.000008352163,0.00031337317,0.000010958],"about_ca_topic_score_codex":0.0096621,"about_ca_topic_score_gemma":0.03132792,"teacher_disagreement_score":0.0096621,"about_ca_system_score_codex":0.0007265979,"about_ca_system_score_gemma":0.00064361043,"threshold_uncertainty_score":0.01921171},"labels":[],"label_agreement":null},{"id":"W2014435661","doi":"10.1128/jcm.39.4.1586-1590.2001","title":"Persistence of a Distinct <i>Corynebacterium diphtheriae</i> Clonal Group within Two Communities in the United States and Canada Where Diphtheria Is Endemic","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Ribotyping; Corynebacterium diphtheriae; Diphtheria; Biology; Molecular epidemiology; Persistence (discontinuity); Virology; Diphtheria toxin; Microbiology; Multilocus sequence typing; Corynebacterium; Genetics; Genotype; Bacteria; Vaccination; Toxin; Gene","score_opus":0.028526652692820773,"score_gpt":0.2897420189049025,"score_spread":0.2612153662120817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014435661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989936,0.00019026281,0.00007846994,0.000073394134,0.000003631414,0.00001453942,0.00016496035,0.0000029542566,0.000478213],"genre_scores_gemma":[0.9990439,0.00013832476,0.0001604136,0.00008697126,0.000002270676,0.0000052955857,0.00034348402,0.0000020645323,0.00021724586],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990927,0.000051068473,0.000034748373,0.00018482102,0.00024907605,0.00038754576],"domain_scores_gemma":[0.9984017,0.00007001103,0.00020522025,0.000048626793,0.00083659333,0.00043791134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003485501,0.0002667201,0.00030592148,0.0012869469,0.0026872337,0.0013988874,0.00064863806,0.00056425104,0.0005234091],"category_scores_gemma":[0.0014385614,0.0002743686,0.00021283924,0.0016501562,0.0015719194,0.00027518385,0.000690028,0.0006471395,0.000106482876],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003917193,0.00010977855,0.9545681,0.000065827284,0.000070130205,0.00057390565,0.0077110026,0.00015673802,0.016850563,0.00031958974,0.0006924947,0.018490156],"study_design_scores_gemma":[0.000013474985,0.0000581425,0.99347395,0.000021195408,0.000031047686,0.0003425475,0.0036710186,0.00016196321,0.0011470884,0.000025725863,0.0010383711,0.000015432654],"about_ca_topic_score_codex":0.9670137,"about_ca_topic_score_gemma":0.97704816,"teacher_disagreement_score":0.032986283,"about_ca_system_score_codex":0.013388124,"about_ca_system_score_gemma":0.0140395155,"threshold_uncertainty_score":0.09713811},"labels":[],"label_agreement":null},{"id":"W2014445841","doi":"10.1128/jcm.01343-07","title":"Prevalence of <i>Chlamydia trachomatis</i> Infection among Low- and High-Risk Filipino Women and Performance of <i>Chlamydia</i> Rapid Tests in Resource-Limited Settings","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Manitoba; University of Cambridge; Wellcome Trust","keywords":"Chlamydia trachomatis; Chlamydia; Medicine; Asymptomatic; Gynecology; Gold standard (test); Hygiene; Obstetrics and gynaecology; Predictive value; Internal medicine; Obstetrics; Biology; Immunology; Pregnancy; Pathology","score_opus":0.013243632472144889,"score_gpt":0.2982351216653269,"score_spread":0.284991489193182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014445841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99976116,0.000045723962,0.000007538503,0.00001495429,6.20462e-7,0.0000028434401,0.000042309985,9.788869e-7,0.00012399453],"genre_scores_gemma":[0.9998902,0.000024689794,0.0000133681,0.0000071037266,0.0000017735182,0.0000027291435,0.000036101166,2.4296654e-7,0.00002374236],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995474,0.00014656832,0.00003861986,0.000077076984,0.00006443531,0.0001258602],"domain_scores_gemma":[0.9983677,0.00034320212,0.00083698024,0.00006951168,0.00014875803,0.00023375219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005650247,0.00028240052,0.0001814418,0.0009051019,0.0004436365,0.0006682315,0.00031436182,0.0003626732,0.00079562794],"category_scores_gemma":[0.0023834817,0.0002903504,0.00019173764,0.00055484363,0.0006968961,0.0005371944,0.0005054674,0.000317928,0.00012405809],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047221372,0.00002638026,0.9988085,0.000008758365,0.000008846627,0.000053621516,0.00020409255,0.000024781488,0.00019537001,0.00000484469,0.000022322245,0.0005953209],"study_design_scores_gemma":[0.0000028609265,0.00008804222,0.9992519,0.0000049783034,0.0000061915466,0.00010460958,0.00037311684,0.0000826276,0.000051864627,0.0000042876713,0.000026818016,0.0000027429896],"about_ca_topic_score_codex":0.017905794,"about_ca_topic_score_gemma":0.021346876,"teacher_disagreement_score":0.017905794,"about_ca_system_score_codex":0.0007028556,"about_ca_system_score_gemma":0.0003078989,"threshold_uncertainty_score":0.035603166},"labels":[],"label_agreement":null},{"id":"W2016728973","doi":"10.1128/jcm.01601-09","title":"Evaluation of Adult Chronic Chagas' Heart Disease Diagnosis by Molecular and Serological Methods","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Serology; Chagas disease; IIf; Trypanosoma cruzi; Concordance; Gold standard (test); Biology; Medicine; Virology; Immunology; Internal medicine; Antibody; Autoantibody; Parasite hosting","score_opus":0.0994276674583359,"score_gpt":0.5163205547450544,"score_spread":0.4168928872867186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016728973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99123794,0.0032479933,0.0029982256,0.00006878162,0.000027006594,0.000056586363,0.00027928484,0.000026029193,0.002058045],"genre_scores_gemma":[0.9953744,0.00071389857,0.0032840506,0.00005698617,0.000040798448,0.00003418067,0.00023208189,0.000003228191,0.0002603081],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883837,0.0004614975,0.00016727073,0.00016329541,0.00025785557,0.000111685054],"domain_scores_gemma":[0.9980464,0.0005937077,0.0005688744,0.000080946265,0.00052558765,0.0001845025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019032247,0.00042006353,0.00038039644,0.00111885,0.00019002192,0.0004242059,0.00019520956,0.00036476372,0.0011123244],"category_scores_gemma":[0.003208398,0.00015760254,0.00015800037,0.0004120519,0.0002821831,0.00039754153,0.00025033063,0.00025113937,0.00037617856],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003658419,0.00006786603,0.9718284,0.000109106164,0.000034654873,0.00021938929,0.00020028099,0.0000498739,0.01404581,0.00003851252,0.00012715782,0.012913029],"study_design_scores_gemma":[0.00002176147,0.00096673856,0.98869777,0.00005032581,0.000070211994,0.0023485026,0.00038819888,0.00093263295,0.005479514,0.00004632686,0.0009885426,0.000009543573],"about_ca_topic_score_codex":0.00050465355,"about_ca_topic_score_gemma":0.0005986465,"teacher_disagreement_score":0.0019032247,"about_ca_system_score_codex":0.00011406799,"about_ca_system_score_gemma":0.00014088496,"threshold_uncertainty_score":0.010065317},"labels":[],"label_agreement":null},{"id":"W2016738087","doi":"10.1128/jcm.02565-14","title":"Comparison of the IMDx Influenza A Virus, Influenza B Virus, and Respiratory Syncytial Virus A/B Assay on the <i>m</i> 2000 Platform with Real-Time Reverse Transcriptase PCR Assays","year":2014,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta; Provincial Laboratory of Public Health","funders":"","keywords":"Virology; Virus; Reverse transcriptase; Biology; Influenza A virus; Orthomyxoviridae; Reverse transcription polymerase chain reaction; Real-time polymerase chain reaction; Viral culture; Polymerase chain reaction; Gene; Messenger RNA","score_opus":0.17265986313304446,"score_gpt":0.4274753858104828,"score_spread":0.25481552267743834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016738087","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1478646,0.04059758,0.027276488,0.62213427,0.05268016,0.0008251399,0.0012334161,0.0014275745,0.10596089],"genre_scores_gemma":[0.6256522,0.014788322,0.04508091,0.25952312,0.025381334,0.00073043,0.0012485231,0.00043743604,0.027157843],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.98728776,0.0057476596,0.0013377416,0.0011262706,0.003788813,0.000711811],"domain_scores_gemma":[0.9810254,0.014079816,0.00061890896,0.00066874624,0.0030511522,0.00055597257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0074321856,0.0008550342,0.0010717252,0.0012166041,0.000673914,0.0022880102,0.001700848,0.0071421466,0.0037839618],"category_scores_gemma":[0.025342656,0.0005496088,0.00063210586,0.0008698447,0.001583814,0.0014116599,0.0004480503,0.006918199,0.0037134169],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0061209775,0.0016391359,0.07653607,0.0017427449,0.00025701686,0.04117289,0.0022063938,0.0013908196,0.057086386,0.010988656,0.34764814,0.45321083],"study_design_scores_gemma":[0.00090240565,0.010786845,0.06993471,0.0015039963,0.00042031467,0.19169256,0.0028960472,0.016029377,0.09635916,0.014303221,0.59469134,0.00048010092],"about_ca_topic_score_codex":0.0013975711,"about_ca_topic_score_gemma":0.0032371955,"teacher_disagreement_score":0.0074321856,"about_ca_system_score_codex":0.00234651,"about_ca_system_score_gemma":0.0008002018,"threshold_uncertainty_score":0.039305687},"labels":[],"label_agreement":null},{"id":"W2017265445","doi":"10.1128/jcm.00242-14","title":"Sequence-Level and Dual-Phase Identification of Salmonella Flagellum Antigens by Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS)","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Flagellum; Serotype; Salmonella; Salmonella enterica; Typing; Antiserum; Mass spectrometry; Chromatography; Tandem mass spectrometry; Antigen; Biology; Microbiology; Chemistry; Bacteria; Genetics","score_opus":0.06372701146597338,"score_gpt":0.3387025114655105,"score_spread":0.27497549999953713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017265445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99394315,0.0006265462,0.0041616946,0.000038434395,0.0000150492315,0.000036627942,0.0007540974,0.00007429218,0.0003501757],"genre_scores_gemma":[0.98436177,0.00032710945,0.013074968,0.000090621565,0.000015405421,0.000055072425,0.0014061929,0.000016856735,0.0006519397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938226,0.000070373535,0.00005420731,0.00015278862,0.0002712289,0.00006909418],"domain_scores_gemma":[0.99948114,0.000083048166,0.00011998816,0.000041103667,0.00022240702,0.000052288087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060228,0.0004984539,0.00027026958,0.0009869805,0.0002971681,0.00035586685,0.00025963705,0.0005868085,0.0005039827],"category_scores_gemma":[0.001166423,0.00018166355,0.00018638281,0.0005017976,0.00031652956,0.0002699899,0.00034379965,0.00021737938,0.000330809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038057502,0.000064742766,0.008738342,0.000042690048,0.000017868935,0.000052521475,0.000046983645,0.00008948914,0.98375666,0.000028566981,0.000040846426,0.006740725],"study_design_scores_gemma":[0.00004361898,0.0016060534,0.08301079,0.000016340575,0.00009224456,0.0011642232,0.00011830302,0.0020009917,0.90987146,0.0001161304,0.0019282643,0.000031594394],"about_ca_topic_score_codex":0.0008945432,"about_ca_topic_score_gemma":0.001203216,"teacher_disagreement_score":0.0009869805,"about_ca_system_score_codex":0.00021559576,"about_ca_system_score_gemma":0.00031313425,"threshold_uncertainty_score":0.003185153},"labels":[],"label_agreement":null},{"id":"W2018015875","doi":"10.1128/jcm.01079-10","title":"Disseminated Mycosis in Veiled Chameleons ( <i>Chamaeleo calyptratus</i> ) Caused by <i>Chamaeleomyces granulomatis</i> , a New Fungus Related to <i>Paecilomyces viridis</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Paecilomyces; Conidium; Dimorphic fungus; Hypha; Mycosis; Fungus; Botany; Zoology; Yeast","score_opus":0.00853744739550704,"score_gpt":0.29463531819080724,"score_spread":0.2860978707953002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018015875","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99971694,0.00006590084,0.000027896935,0.0000055804453,9.4171816e-7,0.000007846593,0.00003094315,0.0000018825771,0.00014206862],"genre_scores_gemma":[0.99949324,0.00009433087,0.00014017429,0.0000091907195,0.0000020417694,0.0000042764786,0.000094900584,5.319853e-7,0.00016133438],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9998584,0.000016773138,0.000010710981,0.00005576051,0.000026829892,0.000031487867],"domain_scores_gemma":[0.99986017,0.000020218107,0.000052126747,0.000008015194,0.000011735259,0.000047782123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012243664,0.0003703797,0.00021151516,0.00072056777,0.0006775351,0.0004199098,0.00013988662,0.00048806574,0.0003944173],"category_scores_gemma":[0.00015798575,0.00013314448,0.00016393891,0.0002574798,0.00042878275,0.00020869993,0.00023603474,0.00027265638,0.000090691974],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092771027,0.00033679002,0.31522182,0.00015435643,0.000057068704,0.011863683,0.0015325217,0.0003036519,0.66052043,0.00008630317,0.00013896803,0.008856716],"study_design_scores_gemma":[0.000020377225,0.0012932841,0.97678614,0.000009264102,0.000033636312,0.0068203984,0.0007193342,0.0002626742,0.01344036,0.0000231819,0.00057805167,0.000013380173],"about_ca_topic_score_codex":0.010743567,"about_ca_topic_score_gemma":0.02409816,"teacher_disagreement_score":0.010743567,"about_ca_system_score_codex":0.0006112395,"about_ca_system_score_gemma":0.00020785733,"threshold_uncertainty_score":0.021362066},"labels":[],"label_agreement":null},{"id":"W2018379564","doi":"10.1128/jcm.00594-10","title":"Real-Time PCR Assay Provides Reliable Assessment of Intrapartum Carriage of Group B <i>Streptococcus</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Carriage; Medicine; Group B; Predictive value; Streptococcus; Obstetrics; Gynecology; Internal medicine; Biology; Pathology","score_opus":0.021520987217852797,"score_gpt":0.367387916856182,"score_spread":0.3458669296383292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018379564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96433675,0.006442929,0.025041325,0.0003030144,0.00014920531,0.00008143095,0.00035195035,0.0002357654,0.003057703],"genre_scores_gemma":[0.9806974,0.001340458,0.016784737,0.00014093785,0.000077593,0.000056814722,0.0002831351,0.00001916112,0.00059975946],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970452,0.0014428585,0.00030241045,0.0004247072,0.00061680895,0.00016792378],"domain_scores_gemma":[0.99210393,0.005111466,0.0015339495,0.0003223761,0.00081960653,0.000108721084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026382066,0.0004890185,0.00042576707,0.0009276837,0.00010581573,0.00066806504,0.00026666466,0.0005612797,0.00094472757],"category_scores_gemma":[0.0120542105,0.00030732437,0.00019222933,0.00029691294,0.00048267024,0.0003924905,0.00020601468,0.00030388898,0.0007829507],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017402157,0.00039581425,0.6529666,0.0004770797,0.0001053856,0.0012335064,0.00072112837,0.0010673092,0.22423811,0.0002754562,0.00073703914,0.116042286],"study_design_scores_gemma":[0.00015334091,0.005164368,0.6344847,0.00043641,0.00031459285,0.019810058,0.0018849451,0.020985752,0.30163315,0.00064083055,0.014356,0.00013583103],"about_ca_topic_score_codex":0.0003594922,"about_ca_topic_score_gemma":0.00032375424,"teacher_disagreement_score":0.0026382066,"about_ca_system_score_codex":0.0001490579,"about_ca_system_score_gemma":0.00023163253,"threshold_uncertainty_score":0.013952315},"labels":[],"label_agreement":null},{"id":"W2018860871","doi":"10.1128/jcm.00585-06","title":"Evaluation of In Situ Methods Used To Detect <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> in Samples from Patients with Crohn's Disease","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation; McGill University","keywords":"Paratuberculosis; Bacilli; Mycobacterium; Biology; Microbiology; Staining; Ziehl–Neelsen stain; Mycobacterium tuberculosis; Mycobacterium avium subspecies paratuberculosis; Virology; Bacteria; Tuberculosis; Pathology; Sputum; Acid-fast; Medicine","score_opus":0.07181691117825274,"score_gpt":0.41668581801915316,"score_spread":0.34486890684090044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018860871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98291034,0.0022400513,0.012551667,0.00013832982,0.00010319442,0.00007997117,0.00019800721,0.000094707095,0.0016836174],"genre_scores_gemma":[0.9797007,0.0014679938,0.01729604,0.00012985051,0.00006065355,0.000121603094,0.0004263768,0.000033089258,0.0007637053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847656,0.00063813577,0.00014294358,0.00034303564,0.00023026305,0.00016895767],"domain_scores_gemma":[0.99840707,0.00069969095,0.00029619815,0.00011025576,0.00036694412,0.000119804936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001801244,0.00051491684,0.0004621798,0.0007806564,0.00027754152,0.0006164514,0.00032891397,0.0005976133,0.0010146695],"category_scores_gemma":[0.0019079171,0.00030370505,0.00029789115,0.00058626506,0.0004679686,0.0002822697,0.00026665884,0.0004988147,0.0003517344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049271743,0.000082141065,0.02345553,0.00028753126,0.000050905655,0.00025746276,0.00033977695,0.00008614453,0.9703363,0.00005875045,0.00005142625,0.0045013074],"study_design_scores_gemma":[0.00010101491,0.005694072,0.19266556,0.00010140225,0.00048754006,0.0054737716,0.0016213987,0.0034598864,0.78556854,0.00017915833,0.0046147415,0.000032933774],"about_ca_topic_score_codex":0.0003115798,"about_ca_topic_score_gemma":0.0006168613,"teacher_disagreement_score":0.001801244,"about_ca_system_score_codex":0.000213589,"about_ca_system_score_gemma":0.00015780509,"threshold_uncertainty_score":0.009525955},"labels":[],"label_agreement":null},{"id":"W2020729533","doi":"10.1128/jcm.03321-14","title":"Molecular Profiling of Escherichia coli O157:H7 and Non-O157 Strains Isolated from Humans and Cattle in Alberta, Canada","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture Food and Rural Development; Provincial Laboratory of Public Health; Ministry of Health; University of Alberta","funders":"Alberta Health Services","keywords":"Escherichia coli; Microbiology; Biology; Profiling (computer programming); Enterobacteriaceae; Bacteria; Genetics; Gene","score_opus":0.01381068221403161,"score_gpt":0.30810379743177907,"score_spread":0.2942931152177475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020729533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812096,0.00036488663,0.00010107688,0.000043097603,0.0000049870587,0.000017648887,0.00052763894,0.0000036667423,0.0008160424],"genre_scores_gemma":[0.9966137,0.00052439567,0.0002960789,0.00007452788,0.000005758736,0.000006099352,0.0010477107,0.0000033849117,0.0014284314],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99965966,0.000027499209,0.000014508212,0.000048871676,0.00014250785,0.00010689582],"domain_scores_gemma":[0.99961084,0.000027441387,0.000035438108,0.000007215484,0.00021962395,0.00009948583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021475788,0.00023741063,0.00025661173,0.0014269515,0.0010754035,0.0006923441,0.0002950148,0.00028966443,0.00059086806],"category_scores_gemma":[0.0004822589,0.00017019812,0.0001379829,0.0013423918,0.00048760025,0.00007008344,0.0002600379,0.00023030308,0.00015874092],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007337301,0.00013219459,0.93757904,0.00008589999,0.0000457869,0.001442543,0.0020122293,0.00023102666,0.043172218,0.000092106806,0.0006309229,0.013842279],"study_design_scores_gemma":[0.0000042778383,0.000089976405,0.9955332,0.000010032449,0.000016446931,0.00047165673,0.0013763752,0.00013988533,0.0016150539,0.000008164649,0.00073060364,0.000004310756],"about_ca_topic_score_codex":0.7843154,"about_ca_topic_score_gemma":0.8709953,"teacher_disagreement_score":0.2156846,"about_ca_system_score_codex":0.0030390602,"about_ca_system_score_gemma":0.0023989768,"threshold_uncertainty_score":0.4339096},"labels":[],"label_agreement":null},{"id":"W2020826398","doi":"10.1128/jcm.03563-13","title":"Outbreak of Vancomycin-Susceptible Enterococcus faecium Containing the Wild-Type <i>vanA</i> Gene","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario; McMaster University","funders":"","keywords":"Enterococcus faecium; Microbiology; Biology; Vancomycin; Enterococcus; Outbreak; Virology; Teicoplanin; Antibiotics; Staphylococcus aureus; Bacteria; Genetics","score_opus":0.039109278076022165,"score_gpt":0.3549367844337628,"score_spread":0.31582750635774065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020826398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985067,0.00012659073,0.000522954,0.00007266541,0.000015839854,0.000046203397,0.00017325953,0.000024858182,0.0005109153],"genre_scores_gemma":[0.9981585,0.0001552042,0.00091798475,0.00013241028,0.000015327616,0.000007272689,0.00027988356,0.000006826113,0.0003265172],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9994885,0.00006907926,0.00010200989,0.00014826126,0.000107744636,0.000084465435],"domain_scores_gemma":[0.9991358,0.00020500188,0.0002553921,0.0000671246,0.00013448583,0.00020231676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002837486,0.0005295428,0.00032115626,0.0003735404,0.0004445022,0.0005821008,0.00027006736,0.00060598215,0.00058719533],"category_scores_gemma":[0.0012504291,0.00020665782,0.0003822899,0.0003814866,0.00033336837,0.0002650185,0.0004436099,0.00063040474,0.00020686185],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002008724,0.0011753929,0.5608155,0.000490273,0.00019789513,0.09924692,0.0029119968,0.001092116,0.30057436,0.00045506808,0.0018478287,0.029183863],"study_design_scores_gemma":[0.00011535198,0.0060454346,0.7005613,0.00014780388,0.00022451396,0.15855719,0.0030429943,0.002223829,0.12189521,0.00021951336,0.0068283034,0.00013857796],"about_ca_topic_score_codex":0.0042134626,"about_ca_topic_score_gemma":0.003386536,"teacher_disagreement_score":0.0042134626,"about_ca_system_score_codex":0.00035126763,"about_ca_system_score_gemma":0.00032022895,"threshold_uncertainty_score":0.00837785},"labels":[],"label_agreement":null},{"id":"W2020998325","doi":"10.1128/jcm.00492-10","title":"Hypervariability of Biofilm Formation and Oxacillin Resistance in a <i>Staphylococcus epidermidis</i> Strain Causing Persistent Severe Infection in an Immunocompromised Patient","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Queen's University; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Queen's University Belfast; Department for Employment and Learning, Northern Ireland","keywords":"Staphylococcus epidermidis; Microbiology; Biology; Biofilm; Genotype; Staphylococcus aureus; Staphylococcal infections; Virology; Gene; Genetics; Bacteria","score_opus":0.03383541027056779,"score_gpt":0.3317299453788268,"score_spread":0.297894535108259,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2020998325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993475,0.0001120568,0.00014188589,0.00006426963,0.000003122238,0.0000053480717,0.000017300707,0.000007829867,0.00030064466],"genre_scores_gemma":[0.99961853,0.000064118125,0.00011756891,0.000047210116,0.000011834088,0.0000021263818,0.000026568965,0.0000029961175,0.00010906664],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99983394,0.000026221687,0.000014644396,0.000045294357,0.000026705327,0.000053199507],"domain_scores_gemma":[0.9997161,0.0000703502,0.00007538369,0.0000239428,0.000018782082,0.00009530999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013046105,0.0005000629,0.0003815239,0.00036306048,0.00077225995,0.00059412274,0.0001762077,0.00076149235,0.0006573858],"category_scores_gemma":[0.0008112778,0.0003098483,0.00029074238,0.00022996275,0.00045648275,0.0003598023,0.0003777499,0.0007952061,0.00024261793],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013640906,0.00054883986,0.47172636,0.00011891756,0.00007789729,0.34011564,0.0034367258,0.0004648517,0.16255641,0.00035437383,0.00066978496,0.018566117],"study_design_scores_gemma":[0.00007758264,0.0031248964,0.33598667,0.000024612966,0.000121232246,0.6294464,0.001099282,0.0014919582,0.026343323,0.00028554114,0.0019482272,0.00005026248],"about_ca_topic_score_codex":0.0008319253,"about_ca_topic_score_gemma":0.0006714381,"teacher_disagreement_score":0.0008319253,"about_ca_system_score_codex":0.00024141087,"about_ca_system_score_gemma":0.00016492559,"threshold_uncertainty_score":0.002199173},"labels":[],"label_agreement":null},{"id":"W2021130708","doi":"10.1128/jcm.41.7.3423-3426.2003","title":"Isolation of <i>Candida dubliniensis</i> in an Aboriginal Community in Ontario, Canada","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; McMaster University; Genome Canada; Ontario Innovation Trust","keywords":"Candida dubliniensis; Isolation (microbiology); Genotype; Indigenous; Biology; Microbiology; Candida albicans; Genetics; Gene; Ecology","score_opus":0.04624487863431618,"score_gpt":0.37631685123193076,"score_spread":0.33007197259761456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021130708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981558,0.00015195776,0.00007784861,0.00009914273,0.000007859244,0.000033821034,0.00013258404,0.000004587047,0.0013364775],"genre_scores_gemma":[0.9979055,0.00023992168,0.00024675558,0.00013487399,0.000008116252,0.0000070570513,0.00016619428,0.0000064817345,0.0012852796],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940574,0.000030168685,0.000026079257,0.0000995644,0.00020072247,0.00023763956],"domain_scores_gemma":[0.99935895,0.00003953368,0.0000632693,0.000021391594,0.00031618544,0.00020072321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021138592,0.0004744437,0.00038912316,0.0011325867,0.006290883,0.0012951208,0.00067325786,0.00051755283,0.0011786944],"category_scores_gemma":[0.0008462899,0.00035736512,0.00025535142,0.0010413949,0.0010786852,0.00017138271,0.0007881765,0.000633506,0.00024508283],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002850553,0.0001943621,0.9094666,0.0001465215,0.000052838866,0.012302084,0.03858147,0.00010727401,0.022476278,0.0002382767,0.0015026403,0.014646568],"study_design_scores_gemma":[0.000020431473,0.0002185837,0.94996583,0.00008309551,0.00008404695,0.007883419,0.0350512,0.00021758207,0.0020971822,0.000049179525,0.004287114,0.000042276457],"about_ca_topic_score_codex":0.96937144,"about_ca_topic_score_gemma":0.9824868,"teacher_disagreement_score":0.030628562,"about_ca_system_score_codex":0.0076714843,"about_ca_system_score_gemma":0.009609666,"threshold_uncertainty_score":0.06161785},"labels":[],"label_agreement":null},{"id":"W2021558145","doi":"10.1128/jcm.03501-14","title":"Erratum for Jamieson et al., Whole-Genome Sequencing of the Mycobacterium tuberculosis Manila Sublineage Results in Less Clustering and Better Resolution than Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat (MIRU-VNTR) Typing and Spoligotyping","year":2015,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Mycobacterium tuberculosis; Variable number tandem repeat; Tandem repeat; Biology; Tuberculosis; Whole genome sequencing; Genome; Computational biology; Virology; Genetics; Medicine; Genotype; Gene; Pathology","score_opus":0.06886626775738132,"score_gpt":0.3614328884695192,"score_spread":0.2925666207121379,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021558145","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00024259598,0.0009189794,0.00061539485,0.05407092,0.94124144,0.000027810729,0.000748788,0.00017544517,0.0019586626],"genre_scores_gemma":[0.013931091,0.012267771,0.009286267,0.309164,0.420103,0.00023734084,0.005974415,0.0015315257,0.22750452],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.997752,0.00031428173,0.00048869423,0.0003183083,0.00096306676,0.00016364649],"domain_scores_gemma":[0.9886003,0.003056428,0.0007096252,0.0004834846,0.006437857,0.00071234215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002500933,0.0022630468,0.0015013459,0.0029094631,0.002529251,0.0024073997,0.00213444,0.004894032,0.02973382],"category_scores_gemma":[0.026459647,0.0013458398,0.0014155713,0.0014002256,0.0013097036,0.0017262092,0.0010402278,0.008296905,0.025038972],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003108917,0.000018741224,0.00010686359,0.000056600067,0.000008282585,0.00016524039,0.000013837413,0.00002416134,0.000062593535,0.00020290539,0.9949884,0.0043212133],"study_design_scores_gemma":[0.000085152125,0.00006399722,0.002022224,0.00040979183,0.000060646038,0.0009007247,0.00009439181,0.00031345754,0.00047710564,0.0006988207,0.99482805,0.00004567603],"about_ca_topic_score_codex":0.016748881,"about_ca_topic_score_gemma":0.0281637,"teacher_disagreement_score":0.02973382,"about_ca_system_score_codex":0.0025560486,"about_ca_system_score_gemma":0.0037159687,"threshold_uncertainty_score":0.09946948},"labels":[],"label_agreement":null},{"id":"W2021896365","doi":"10.1128/jcm.01035-14","title":"Competency Assessment of Microbiology Medical Laboratory Technologists in Ontario, Canada","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Patient Safety and Medication Errors","field":"Health Professions","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Accreditation; Worksheet; Medical education; Competency assessment; Medical laboratory; Test (biology); Clinical microbiology; Medicine; External quality assessment; Quality assurance; Medical physics; Psychology; Nursing; Pathology; Biology","score_opus":0.060108220142200054,"score_gpt":0.4573515880644004,"score_spread":0.39724336792220033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021896365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9531491,0.0024625054,0.00072771363,0.008687464,0.00012352604,0.0005653781,0.0011273241,0.00006864933,0.033088353],"genre_scores_gemma":[0.9924016,0.0009267509,0.0011454525,0.0009621854,0.000015818658,0.000072860894,0.0003671796,0.0000104775045,0.0040976927],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9940514,0.00078523846,0.00033774652,0.00032559634,0.00320596,0.001294092],"domain_scores_gemma":[0.97665817,0.0016204983,0.0021542222,0.00027456644,0.01255746,0.0067350464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00495277,0.00020821158,0.00022601549,0.0013218303,0.0024648446,0.0013957549,0.0013771082,0.0003890946,0.0026211964],"category_scores_gemma":[0.014518753,0.00031462777,0.00026289697,0.0013496322,0.0010140414,0.0004843144,0.0013675992,0.00069539377,0.00025804382],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014932365,0.00036123348,0.8633945,0.0004596677,0.000036566922,0.0004432502,0.01751158,0.00057494553,0.002023191,0.0010098898,0.025720356,0.08831549],"study_design_scores_gemma":[0.000019175939,0.00014162359,0.97555166,0.00021120218,0.0000069194275,0.00008857298,0.00733599,0.00078356784,0.00027448876,0.00006304757,0.015498726,0.000024918147],"about_ca_topic_score_codex":0.97607917,"about_ca_topic_score_gemma":0.986585,"teacher_disagreement_score":0.0503053,"about_ca_system_score_codex":0.0503053,"about_ca_system_score_gemma":0.12492179,"threshold_uncertainty_score":0.3649922},"labels":[],"label_agreement":null},{"id":"W2023633937","doi":"10.1128/jcm.42.7.3374-3376.2004","title":"Bacteriology of a Bear Bite Wound to a Human: Case Report","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta Hospital","funders":"","keywords":"Ursus; Cefazolin; Bacteriology; Serratia marcescens; Aeromonas hydrophila; Metronidazole; Microbiology; Biology; Medicine; Antibiotics; Environmental health; Bacteria","score_opus":0.050274252272601336,"score_gpt":0.3823232122295063,"score_spread":0.332048959956905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023633937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776152,0.0033868558,0.0025843787,0.0027250834,0.00063514756,0.00034958124,0.00030221982,0.00013690439,0.012264665],"genre_scores_gemma":[0.99254453,0.0019763107,0.0012001274,0.0010786616,0.0009535057,0.00003443593,0.00010808566,0.000030332558,0.0020738747],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9988446,0.00013826537,0.00009777396,0.00022945822,0.00025217404,0.00043769737],"domain_scores_gemma":[0.997883,0.00051776064,0.0003904057,0.00021015464,0.0001746069,0.00082403026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046434934,0.0031514196,0.0013958307,0.0027277456,0.0056748274,0.0026090862,0.0016082443,0.0071060816,0.0029851343],"category_scores_gemma":[0.003571588,0.0017236351,0.0012093184,0.0017089207,0.0028337974,0.0016073672,0.0017261016,0.004794182,0.0013492968],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008416984,0.00020716812,0.008459234,0.0000708577,0.0000149748685,0.98783654,0.0006920609,0.000058998103,0.0009820006,0.00009831896,0.0004392746,0.0010564778],"study_design_scores_gemma":[0.000020800233,0.00036724837,0.010333719,0.000031716027,0.000024216062,0.9864305,0.00092753605,0.00018036993,0.00073269254,0.00009057408,0.0008370277,0.00002367638],"about_ca_topic_score_codex":0.012020028,"about_ca_topic_score_gemma":0.015774082,"teacher_disagreement_score":0.012020028,"about_ca_system_score_codex":0.0022874388,"about_ca_system_score_gemma":0.0016875009,"threshold_uncertainty_score":0.023900092},"labels":[],"label_agreement":null},{"id":"W2023901868","doi":"10.1128/jcm.02036-13","title":"Multicenter Evaluation of a Commercial Cytomegalovirus Quantitative Standard: Effects of Commutability on Interlaboratory Concordance","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clinical Laboratory Practices and Quality Control","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Concordance; Cytomegalovirus infections; External quality assessment; Calibration; Concordance correlation coefficient; Medicine; Statistics; Virology; Human cytomegalovirus; Mathematics; Pathology; Internal medicine","score_opus":0.10168116713789292,"score_gpt":0.47935898481479966,"score_spread":0.3776778176769067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023901868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8963431,0.002603422,0.09380338,0.0002506215,0.00028912514,0.0016702269,0.00069632294,0.00070311764,0.0036406124],"genre_scores_gemma":[0.94310534,0.00021064773,0.053109735,0.00023628063,0.00006180906,0.0008659799,0.001467747,0.00014556549,0.0007968215],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.8866814,0.05453791,0.007796666,0.018938852,0.030940851,0.0011043806],"domain_scores_gemma":[0.905018,0.039388474,0.011668962,0.019794812,0.02249341,0.0016363073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.08376031,0.0011831259,0.0009228315,0.0014123638,0.0013370394,0.0022228677,0.0018538515,0.0018645896,0.0010211904],"category_scores_gemma":[0.08294481,0.0008377758,0.0009909236,0.0021470515,0.0024557891,0.0008474236,0.0022434006,0.0010939748,0.0007674609],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016666364,0.0026577653,0.4645346,0.0012552184,0.0023934753,0.00025717978,0.0066711153,0.008793854,0.38898447,0.0026357698,0.0021924588,0.10295769],"study_design_scores_gemma":[0.0011024574,0.028373754,0.5057347,0.00026432093,0.0014064927,0.0010059689,0.0008015371,0.026934277,0.42079303,0.0011608384,0.012194959,0.00022759847],"about_ca_topic_score_codex":0.0015186006,"about_ca_topic_score_gemma":0.0017318199,"teacher_disagreement_score":0.08376031,"about_ca_system_score_codex":0.0015348098,"about_ca_system_score_gemma":0.0012584943,"threshold_uncertainty_score":0.44297218},"labels":[],"label_agreement":null},{"id":"W2024063586","doi":"10.1128/jcm.00029-14","title":"Deriving Group A Streptococcus Typing Information from Short-Read Whole-Genome Sequencing Data","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"Centers for Disease Control and Prevention; Imperial College London","keywords":"Typing; Multilocus sequence typing; Genome; Biology; Whole genome sequencing; Computational biology; Genetics; Bacterial genome size; Streptococcus pyogenes; Gene; Genotype; Bacteria","score_opus":0.11286576944570695,"score_gpt":0.39308728301151286,"score_spread":0.28022151356580594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024063586","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6680662,0.0014730191,0.22042309,0.000697418,0.00024956104,0.00042201742,0.099151954,0.0035716824,0.005945142],"genre_scores_gemma":[0.4260143,0.0010876256,0.42666537,0.00041551102,0.00008979289,0.00022480144,0.14321773,0.0005816368,0.0017032303],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988918,0.0002660159,0.00021832866,0.00022077758,0.00032008885,0.00008299222],"domain_scores_gemma":[0.99679416,0.0011192394,0.0006353147,0.0005335675,0.00080589805,0.00011180802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019574072,0.0006488146,0.0005544046,0.0034010122,0.00054205756,0.0013418518,0.00050689245,0.00061352743,0.001553196],"category_scores_gemma":[0.008295481,0.00033626496,0.00086012535,0.0035789504,0.00019586043,0.00077111984,0.00073343265,0.0010236015,0.001698526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001308302,0.00052692275,0.20302874,0.0013611106,0.0004507725,0.0013302615,0.0013656698,0.013028957,0.5364279,0.00344776,0.009720107,0.22800352],"study_design_scores_gemma":[0.000109837834,0.00072434096,0.37630004,0.00050408836,0.0007225499,0.0021175048,0.0019855092,0.12017121,0.3911634,0.009799576,0.09613547,0.00026642086],"about_ca_topic_score_codex":0.0023998248,"about_ca_topic_score_gemma":0.005172322,"teacher_disagreement_score":0.0034010122,"about_ca_system_score_codex":0.00037584075,"about_ca_system_score_gemma":0.0009519854,"threshold_uncertainty_score":0.010351837},"labels":[],"label_agreement":null},{"id":"W2024274526","doi":"10.1128/jcm.40.3.965-972.2002","title":"Geographic Distribution of Mating Type Alleles of <i>Cryptococcus neoformans</i> in Four Areas of the United States","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Serotype; Mating type; Biology; Cryptococcus neoformans; Typing; Allele; Microbiology; Locus (genetics); Genetics; Population; Gene; Medicine","score_opus":0.05541655115608292,"score_gpt":0.33624267789674633,"score_spread":0.28082612674066343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024274526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99944633,0.0000633459,0.000058165228,0.000017885055,0.0000010891637,0.00000434861,0.00013432866,0.0000031405493,0.00027129028],"genre_scores_gemma":[0.99938,0.00006008606,0.0001688904,0.000026825035,0.0000015458825,0.0000048803777,0.0002792752,9.515789e-7,0.00007751296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99980646,0.000053958036,0.000022191096,0.000049433715,0.000034600853,0.00003340071],"domain_scores_gemma":[0.9994535,0.00007594149,0.00022303507,0.000032981363,0.00012624793,0.00008822718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002307308,0.000156222,0.00012695052,0.00087901426,0.00030341363,0.0002554907,0.0001592538,0.00017674631,0.00052110973],"category_scores_gemma":[0.00048313173,0.0001328229,0.000113689326,0.0007386207,0.00026110865,0.00012539167,0.00025494906,0.00015776265,0.000077588404],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000053623673,0.000019843752,0.9936801,0.0000071744525,0.000020355366,0.00006390229,0.00021400616,0.000053098553,0.0023021582,0.000023795836,0.00012287605,0.0034390378],"study_design_scores_gemma":[0.0000026667385,0.00003246863,0.99892634,0.0000058484434,0.000009151878,0.0001415758,0.00030347143,0.000078721896,0.00029024688,0.000009270696,0.00019770271,0.0000025997842],"about_ca_topic_score_codex":0.04048969,"about_ca_topic_score_gemma":0.07657656,"teacher_disagreement_score":0.04048969,"about_ca_system_score_codex":0.000383349,"about_ca_system_score_gemma":0.00023363385,"threshold_uncertainty_score":0.08050799},"labels":[],"label_agreement":null},{"id":"W2024456369","doi":"10.1128/jcm.06090-11","title":"Novel Microsphere-Based Method for Detection and Typing of 46 Mucosal Human Papillomavirus Types","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland; Birds Canada; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Genotyping; Typing; Human papillomavirus; Microsphere; Biology; Nucleic acid thermodynamics; Virology; DNA–DNA hybridization; In situ hybridization; DNA; Molecular biology; Genotype; Gene; Genetics; Base sequence; Medicine","score_opus":0.1880611035204167,"score_gpt":0.4796193383893839,"score_spread":0.29155823486896726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024456369","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2993329,0.008240832,0.684081,0.000627859,0.0005396469,0.00068883627,0.0014807272,0.0020762288,0.002931938],"genre_scores_gemma":[0.31841487,0.0019974832,0.67104167,0.00035904467,0.00015318864,0.00052268594,0.0011758136,0.000105103834,0.006230095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990602,0.00020765483,0.000047057696,0.00024795005,0.00035209162,0.000085048036],"domain_scores_gemma":[0.99943286,0.00019881438,0.00008662229,0.000064646476,0.00014649674,0.00007045762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011098731,0.0007631417,0.0007127058,0.0008086074,0.00039684636,0.0003799548,0.0010093417,0.00092449697,0.0014601953],"category_scores_gemma":[0.00073488336,0.00043181962,0.00047060812,0.000320749,0.0003455728,0.0005480771,0.00046870657,0.0010496941,0.00092756964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038429367,0.000029155666,0.00033071352,0.00006359299,0.0000130457,0.000027217906,0.00002257154,0.00010703571,0.990954,0.00014261939,0.00018053521,0.008091115],"study_design_scores_gemma":[0.000037656224,0.00057985954,0.003363674,0.000014706671,0.000070970906,0.0010001046,0.00002417205,0.0054033725,0.980624,0.00018300803,0.008630592,0.00006785176],"about_ca_topic_score_codex":0.0011164193,"about_ca_topic_score_gemma":0.0022177189,"teacher_disagreement_score":0.0014601953,"about_ca_system_score_codex":0.00044331822,"about_ca_system_score_gemma":0.0004429606,"threshold_uncertainty_score":0.005869627},"labels":[],"label_agreement":null},{"id":"W2024538134","doi":"10.1128/jcm.02824-14","title":"Development of a Rapid Multiplex PCR Assay To Genotype Pasteurella multocida Strains by Use of the Lipopolysaccharide Outer Core Biosynthesis Locus","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"Australian Government","keywords":"Pasteurella multocida; Serotype; Biology; Microbiology; Genotyping; Multiplex polymerase chain reaction; Genotype; Antiserum; Multiplex; Typing; Bacteria; Polymerase chain reaction; Genetics; Gene; Antibody","score_opus":0.0915165841289854,"score_gpt":0.348431203223799,"score_spread":0.2569146190948136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024538134","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.33335483,0.0023232189,0.65154773,0.0004958753,0.00043715668,0.0026913837,0.0029420657,0.0031591451,0.0030486067],"genre_scores_gemma":[0.27205098,0.00077383424,0.7200693,0.00033755932,0.000108501896,0.0013422061,0.0026962734,0.00012757136,0.0024937426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9949911,0.0010146343,0.00036940307,0.0018632245,0.0014104365,0.00035119237],"domain_scores_gemma":[0.9969874,0.0011334582,0.0005679408,0.00031995302,0.00076611014,0.00022505947],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029110778,0.0015902618,0.0010912182,0.0019249842,0.00035099714,0.0008357124,0.0011073184,0.0014220332,0.0009752737],"category_scores_gemma":[0.004090779,0.0007989256,0.00062963675,0.0007282978,0.0006405739,0.0009141201,0.0008447382,0.0013336887,0.0012324296],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002631309,0.00030391206,0.004249126,0.00020204288,0.00004364328,0.00010211983,0.00014709253,0.0010563554,0.9531371,0.0003350532,0.00045274582,0.039707728],"study_design_scores_gemma":[0.00010510604,0.0023496891,0.012036794,0.00007965054,0.00017481801,0.0010045863,0.00011326543,0.032103688,0.94298446,0.0003449326,0.008563409,0.00013960506],"about_ca_topic_score_codex":0.0006751579,"about_ca_topic_score_gemma":0.00082989316,"teacher_disagreement_score":0.0029110778,"about_ca_system_score_codex":0.0003869243,"about_ca_system_score_gemma":0.000626091,"threshold_uncertainty_score":0.015395403},"labels":[],"label_agreement":null},{"id":"W2024807558","doi":"10.1128/jcm.01238-10","title":"The International Circumpolar Surveillance Interlaboratory Quality Control Program for <i>Streptococcus pneumoniae</i> , 1999 to 2008","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"Centers for Disease Control and Prevention","keywords":"Concordance; Broth microdilution; Medicine; Etest; Streptococcus pneumoniae; Microbiology; Internal medicine; Biology; Antibiotics; Minimum inhibitory concentration","score_opus":0.030171990326468192,"score_gpt":0.4208287142325578,"score_spread":0.39065672390608963,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024807558","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4944849,0.027690519,0.03895297,0.006201679,0.0016588713,0.021202128,0.24144109,0.0019206603,0.16644712],"genre_scores_gemma":[0.52254397,0.0135028865,0.08590482,0.0057783686,0.00072986895,0.009295846,0.3184264,0.00042028463,0.04339747],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99328184,0.0016691027,0.00078632205,0.0010152301,0.0027302667,0.00051719754],"domain_scores_gemma":[0.97678876,0.00061249133,0.0043535503,0.0011105598,0.015742168,0.0013924501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014039626,0.0010689399,0.0005374654,0.0051301233,0.001244477,0.0019482028,0.0014779149,0.00047468324,0.0021658465],"category_scores_gemma":[0.008543316,0.00038509155,0.00042234457,0.0049029323,0.00052299694,0.00044940517,0.001197132,0.00067094265,0.0009103158],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012008887,0.00038448212,0.76796407,0.0012257203,0.00020864715,0.00026709813,0.0019884298,0.0017024291,0.007472216,0.001031218,0.06647724,0.15007758],"study_design_scores_gemma":[0.00006397841,0.00032020352,0.901941,0.0006814504,0.000100688645,0.0001543568,0.00057757006,0.001124375,0.003558268,0.00007324815,0.09137634,0.00002848609],"about_ca_topic_score_codex":0.28184763,"about_ca_topic_score_gemma":0.20467068,"teacher_disagreement_score":0.28184763,"about_ca_system_score_codex":0.006050707,"about_ca_system_score_gemma":0.011396582,"threshold_uncertainty_score":0.5604142},"labels":[],"label_agreement":null},{"id":"W2025051269","doi":"10.1128/jcm.39.4.1429-1435.2001","title":"Evaluation of the NucliSens Basic Kit for Detection of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> in Genital Tract Specimens Using Nucleic Acid Sequence-Based Amplification of 16S rRNA","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Neisseria gonorrhoeae; NASBA; Chlamydia trachomatis; Biology; Nucleic acid; Virology; Multiplex; Sexually transmitted disease; Microbiology; RNA; Molecular biology; Gene; Syphilis","score_opus":0.16057953741197814,"score_gpt":0.4124782270919116,"score_spread":0.25189868967993345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025051269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8857396,0.0073200595,0.092906624,0.0005577218,0.00026697654,0.0025502013,0.0024290795,0.0008923822,0.0073374314],"genre_scores_gemma":[0.67341864,0.004471967,0.30810753,0.00048431716,0.00013537167,0.0018314868,0.0070181023,0.00025971897,0.0042729387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98718643,0.0038437864,0.0011542208,0.0011684792,0.0061993017,0.00044764177],"domain_scores_gemma":[0.9938326,0.0019331934,0.00061744865,0.00044874105,0.00286964,0.00029825425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012782459,0.0015669849,0.0010868713,0.0020887633,0.00041662515,0.00084935693,0.0020032846,0.0012882695,0.0017779531],"category_scores_gemma":[0.007800687,0.0009713363,0.0007204064,0.0008288496,0.00092238013,0.0006796984,0.00087426236,0.00047559378,0.0011539579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012471026,0.0004024042,0.03291078,0.00085786806,0.000120814315,0.0002875993,0.0004012002,0.0010411127,0.93065184,0.00020848401,0.00044996938,0.031420793],"study_design_scores_gemma":[0.00017550503,0.009901389,0.049755864,0.0002457179,0.00047715727,0.0039659487,0.00022367408,0.010714738,0.91327906,0.00019941339,0.010935158,0.0001263043],"about_ca_topic_score_codex":0.002173303,"about_ca_topic_score_gemma":0.002995508,"teacher_disagreement_score":0.012782459,"about_ca_system_score_codex":0.000592427,"about_ca_system_score_gemma":0.000986894,"threshold_uncertainty_score":0.067600906},"labels":[],"label_agreement":null},{"id":"W2025722365","doi":"10.1128/jcm.00493-15","title":"Molecular Assay for Detection of Genetic Markers Associated with Decreased Susceptibility to Cephalosporins in Neisseria gonorrhoeae","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Saskatchewan Disease Control Laboratory; Dr. Georges-L.-Dumont University Hospital Centre; Provincial Laboratory of Public Health; Public Health Agency of Canada; Toronto Public Health; Ste. Anne's Hospital; Public Health Ontario; BC Centre for Disease Control","funders":"Public Health Agency","keywords":"Neisseria gonorrhoeae; MTRR; Cefixime; Cephalosporin; Nucleic Acid Amplification Tests; Microbiology; Biology; Gonorrhea; Virology; Neisseria; Polymerase chain reaction; Genotype; Genetics; Antibiotics; Chlamydia trachomatis; Gene; Bacteria","score_opus":0.04871002686064121,"score_gpt":0.36987688834068405,"score_spread":0.32116686148004286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025722365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778156,0.001136053,0.017753743,0.00011839264,0.000031067248,0.00026383245,0.0011806838,0.00018274531,0.0015177415],"genre_scores_gemma":[0.9340274,0.0008887638,0.0603911,0.00021372756,0.00002600278,0.00034063365,0.0028911533,0.00002269922,0.001198536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984598,0.00044219862,0.0001482743,0.00034850658,0.0005034016,0.00009781434],"domain_scores_gemma":[0.9979949,0.000836211,0.00056702597,0.00015825313,0.0003534556,0.00009020758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001038736,0.00059187476,0.00045290566,0.0012688133,0.0001898287,0.00052396295,0.0004263052,0.00065191963,0.00074838806],"category_scores_gemma":[0.0030846554,0.00040099982,0.00031081965,0.0006341013,0.00036560185,0.00021442927,0.00026821444,0.00047808987,0.0003290115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021360398,0.00019180107,0.060913887,0.000097972865,0.0000571463,0.00010720267,0.00013217289,0.0002539723,0.92952085,0.00006320617,0.00010784376,0.008340287],"study_design_scores_gemma":[0.00010003063,0.0024302253,0.38291797,0.00007541748,0.00019077394,0.0023699591,0.00028107146,0.00990437,0.598191,0.00013822906,0.003347673,0.000053262887],"about_ca_topic_score_codex":0.0014015576,"about_ca_topic_score_gemma":0.0020036087,"teacher_disagreement_score":0.0014015576,"about_ca_system_score_codex":0.00029761976,"about_ca_system_score_gemma":0.00023309363,"threshold_uncertainty_score":0.0054934025},"labels":[],"label_agreement":null},{"id":"W2026029473","doi":"10.1128/jcm.00855-07","title":"Nasal <i>Staphylococcus aureus</i> Carriage Is Not a Risk Factor for Lower-Airway Infection in Young Cystic Fibrosis Patients","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Staphylococcus aureus; Medicine; Nose; Carriage; Cystic fibrosis; Staphylococcal infections; Risk factor; Internal medicine; Nasal administration; Mucous membrane of nose; Micrococcaceae; Persistence (discontinuity); Airway; Gastroenterology; Anterior nares; Methicillin-resistant Staphylococcus aureus; Surgery; Immunology; Pathology; Bacteria; Biology","score_opus":0.02617881251398646,"score_gpt":0.3784105977999905,"score_spread":0.352231785286004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026029473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865544,0.00047986838,0.00005120331,0.0000814238,0.000016076167,0.0000052266587,0.00009447785,0.0000052064106,0.00061110617],"genre_scores_gemma":[0.99961805,0.00008583714,0.00004801294,0.000055394627,0.000018043926,0.0000033064823,0.00008307681,0.0000015017164,0.00008676619],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996362,0.000071365925,0.000045346635,0.00008645124,0.00008465663,0.000075979864],"domain_scores_gemma":[0.9978034,0.00039297884,0.0009978836,0.00009233937,0.00022297625,0.0004904638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048329317,0.00024986017,0.0004792641,0.00034530918,0.00037470326,0.00062352256,0.00017896209,0.0005915288,0.002480761],"category_scores_gemma":[0.0035088114,0.00020949921,0.0004275489,0.00030774894,0.00026237636,0.0004164012,0.00025988696,0.00048580833,0.00035962174],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009256659,0.000024606352,0.99817646,0.0000086417385,0.0000135875325,0.00020803839,0.00003285,0.000006469314,0.00048156787,0.0000057191432,0.00009226183,0.0008573727],"study_design_scores_gemma":[0.0000061120872,0.00018796712,0.99804425,0.000013993123,0.000020329257,0.0013341149,0.000098824974,0.00006073022,0.000074216805,0.000009884633,0.00014658467,0.0000028884895],"about_ca_topic_score_codex":0.0031827376,"about_ca_topic_score_gemma":0.0026882922,"teacher_disagreement_score":0.0031827376,"about_ca_system_score_codex":0.0001908705,"about_ca_system_score_gemma":0.00032023448,"threshold_uncertainty_score":0.008298993},"labels":[],"label_agreement":null},{"id":"W2026095051","doi":"10.1128/jcm.42.6.2663-2667.2004","title":"Comparative Evaluation of Three Serological Methods for Detection of Human Herpesvirus 8-Specific Antibodies in Canadian Allogeneic Stem Cell Transplant Recipients","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont; Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Serology; Virology; Antibody; Transplantation; Seroconversion; Immunology; Antigen; Biology; Medicine; Internal medicine","score_opus":0.19071011449936917,"score_gpt":0.46405395173936104,"score_spread":0.2733438372399919,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026095051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975399,0.0006499133,0.00048594575,0.00001868124,0.0000060316684,0.0000217732,0.00010841944,0.0000210039,0.0011483785],"genre_scores_gemma":[0.99785125,0.00039406316,0.001257749,0.000019672852,0.0000046696205,0.000012281593,0.00021216128,0.0000027266035,0.0002455089],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986852,0.00018292863,0.00007455761,0.00013674353,0.00074579695,0.0001748261],"domain_scores_gemma":[0.9984459,0.00033426634,0.00029890268,0.000057826954,0.00063873566,0.00022444622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009367277,0.0005721238,0.0002779011,0.001625508,0.00047384753,0.0005031524,0.00035195713,0.00022609523,0.00040938676],"category_scores_gemma":[0.0022226635,0.0002663265,0.00021448181,0.0009121365,0.00039201896,0.00014089007,0.00024723195,0.00027008465,0.00010125673],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017259715,0.00021968244,0.8417689,0.0001911104,0.00015964263,0.00022015141,0.00076905894,0.000518593,0.11993658,0.000089752575,0.00020343867,0.03419712],"study_design_scores_gemma":[0.00003986618,0.0009757468,0.95961994,0.0000203089,0.00013394472,0.0008926633,0.0002864032,0.0013377788,0.035870746,0.000015830803,0.0007809462,0.000025757538],"about_ca_topic_score_codex":0.14102739,"about_ca_topic_score_gemma":0.25064427,"teacher_disagreement_score":0.14102739,"about_ca_system_score_codex":0.0022127377,"about_ca_system_score_gemma":0.0010498421,"threshold_uncertainty_score":0.28041303},"labels":[],"label_agreement":null},{"id":"W2026865505","doi":"10.1128/jcm.44.3.1204-1205.2006","title":"Mapping the Effects of Genetic Susceptibility and <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i> Infection on Crohn's Disease: Strong but Independent","year":2006,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thunder Bay Regional Health Sciences Centre","funders":"","keywords":"Paratuberculosis; Crohn's disease; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Microbiology; Biology; Disease; Crohn disease; Virology; Bacteria; Medicine; Genetics; Pathology","score_opus":0.03044835015204573,"score_gpt":0.32135536070508774,"score_spread":0.290907010553042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2026865505","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2873135,0.008713507,0.0016745355,0.6746725,0.012804888,0.00009434459,0.0004963327,0.00013168991,0.014098739],"genre_scores_gemma":[0.68036956,0.004117847,0.0016745452,0.21795604,0.08625681,0.00008985228,0.00023223084,0.000076361444,0.0092268],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9979108,0.0012406384,0.0001889866,0.00025340382,0.00023370516,0.00017240376],"domain_scores_gemma":[0.98414224,0.01303406,0.0006213755,0.0005170175,0.0009130346,0.00077222736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023363838,0.00057328405,0.0011463091,0.00051805156,0.0009251301,0.0006688709,0.00092967635,0.0056251897,0.002672823],"category_scores_gemma":[0.011120099,0.00027062697,0.00044770577,0.0004378095,0.0013234611,0.0009438961,0.00039285308,0.0043285335,0.0012901888],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0086252205,0.0010732627,0.24161059,0.0009941622,0.0005748052,0.21473208,0.002755775,0.0006442257,0.02883279,0.0047827167,0.388549,0.10682535],"study_design_scores_gemma":[0.0014302008,0.0048323004,0.3887795,0.0006399127,0.0008054306,0.29792196,0.0027334257,0.004669141,0.015265547,0.016196387,0.26640683,0.00031941247],"about_ca_topic_score_codex":0.0008018864,"about_ca_topic_score_gemma":0.0011225807,"teacher_disagreement_score":0.0056251897,"about_ca_system_score_codex":0.0006803614,"about_ca_system_score_gemma":0.00025542788,"threshold_uncertainty_score":0.0123561025},"labels":[],"label_agreement":null},{"id":"W2027450488","doi":"10.1128/jcm.41.1.295-303.2003","title":"Culture-Independent Molecular Analysis of Microbial Constituents of the Healthy Human Outer Ear","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Ear Surgery and Otitis Media","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institutes of Health","keywords":"Biology; Outer ear; Middle ear; Phylogenetic tree; Otitis; Genetics; Phylogenetics; Population; Ribosomal DNA; 16S ribosomal RNA; Microbiology; Sequence analysis; Ear canal; Evolutionary biology; Bacteria; Zoology; Gene; Anatomy","score_opus":0.040982462332935087,"score_gpt":0.3869629207028572,"score_spread":0.34598045836992214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027450488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975055,0.00057453266,0.0014749626,0.000019709689,0.000009035904,0.00001874532,0.00015939177,0.0000059426307,0.00023228995],"genre_scores_gemma":[0.9941555,0.0006272484,0.0039449944,0.00003651884,0.000026053007,0.000031873507,0.00060267095,0.000005766317,0.00056929607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998061,0.00003898143,0.000016243881,0.00005248307,0.00005751014,0.00002865246],"domain_scores_gemma":[0.99973184,0.000058993952,0.00004968964,0.000045777248,0.00008411217,0.000029504645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020459702,0.0002076713,0.00018484853,0.000307134,0.0001698959,0.00022149537,0.00010306546,0.00021315586,0.0006326073],"category_scores_gemma":[0.0007097617,0.000091062444,0.00013810507,0.00019054826,0.00023168199,0.0001396133,0.00022408177,0.00020329628,0.00032812599],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023457309,0.000058575082,0.040149115,0.000050076844,0.000020855237,0.00012730574,0.00018516555,0.000058977206,0.951203,0.000030049703,0.00004852309,0.007833732],"study_design_scores_gemma":[0.00004670201,0.0022704378,0.57693446,0.00003278275,0.00018565307,0.0033098357,0.001026114,0.001625649,0.41126642,0.00021986611,0.0030567087,0.000025342768],"about_ca_topic_score_codex":0.0006443491,"about_ca_topic_score_gemma":0.0009466309,"teacher_disagreement_score":0.0006443491,"about_ca_system_score_codex":0.000069631715,"about_ca_system_score_gemma":0.000083965926,"threshold_uncertainty_score":0.0021163225},"labels":[],"label_agreement":null},{"id":"W2027772389","doi":"10.1128/jcm.01768-09","title":"Regional Profiling for Determination of Genotype Diversity of Mastitis-Specific <i>Staphylococcus aureus</i> Lineage in Canada by Use of Clumping Factor A, Pulsed-Field Gel Electrophoresis, and <i>spa</i> Typing","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Public Health Agency of Canada; Health Canada; Institut National de Santé Publique du Québec; McGill University","funders":"Agriculture and Agri-Food Canada; Novalait; Natural Sciences and Engineering Research Council of Canada; National Natural Science Foundation of China; Public Health Agency of Canada; Dairy Farmers of Canada","keywords":"Genotype; Typing; Biology; Pulsed-field gel electrophoresis; Mastitis; Staphylococcus aureus; Microbiology; DNA profiling; Gel electrophoresis; Genetics; Bacteria; Gene; DNA","score_opus":0.04647906636583427,"score_gpt":0.31133006022321247,"score_spread":0.2648509938573782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027772389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963618,0.0003548284,0.0013548913,0.00003339724,0.00000289159,0.000051557927,0.00067885104,0.000023752533,0.0011379567],"genre_scores_gemma":[0.9914886,0.0002933254,0.006217305,0.0000428885,0.000001809543,0.00002404923,0.0010994183,0.000010326088,0.0008224225],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995819,0.000029567029,0.000020045813,0.000093407376,0.00016590368,0.00010930536],"domain_scores_gemma":[0.9994216,0.000037333186,0.00008988794,0.00001882905,0.0003492346,0.00008324462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027036574,0.00028934068,0.00025827417,0.0016657526,0.0009808528,0.0007382164,0.0003718761,0.00022750601,0.00048659946],"category_scores_gemma":[0.00078217214,0.00020473343,0.00028315003,0.0018250472,0.00028309954,0.0001464715,0.00037048422,0.00025664453,0.00014924293],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040274236,0.0000692301,0.7989018,0.00009839675,0.000083661915,0.00035649107,0.0012702907,0.0011099296,0.16411278,0.00019292026,0.00044550674,0.03295622],"study_design_scores_gemma":[0.0000056560393,0.00010195052,0.98661125,0.000017882323,0.00003638668,0.00026952274,0.00095887395,0.0017530463,0.008425025,0.00002464644,0.0017808022,0.0000149223715],"about_ca_topic_score_codex":0.87598825,"about_ca_topic_score_gemma":0.91322756,"teacher_disagreement_score":0.124011755,"about_ca_system_score_codex":0.003970065,"about_ca_system_score_gemma":0.0059353192,"threshold_uncertainty_score":0.24948412},"labels":[],"label_agreement":null},{"id":"W2029213791","doi":"10.1128/jcm.00637-11","title":"Extensive Horizontal Gene Transfer in Ureaplasmas from Humans Questions the Utility of Serotyping for Diagnostic Purposes","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases","keywords":"Serotype; Ureaplasma urealyticum; Biology; Ureaplasma; Virulence; Virology; Mycoplasmataceae; Microbiology; Genetics; Gene; Mycoplasma; Mollicutes","score_opus":0.129034224415289,"score_gpt":0.38508948251185826,"score_spread":0.25605525809656926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029213791","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795607,0.015279827,0.0021275894,0.0016332011,0.000036509093,0.000016278836,0.0000802718,0.000041939795,0.0012236119],"genre_scores_gemma":[0.9933193,0.0042385673,0.0016158588,0.000500375,0.000074266296,0.000010681151,0.00006224236,0.000006478094,0.00017225507],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99892706,0.00048019187,0.00006495134,0.00018264588,0.00024460658,0.00010059496],"domain_scores_gemma":[0.9980294,0.0011462126,0.00031247435,0.00030896298,0.000113120004,0.00008981059],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022046587,0.00019197838,0.00029770544,0.00039596285,0.00029551276,0.0009640335,0.00029233028,0.0008678206,0.000717594],"category_scores_gemma":[0.00428475,0.0001507904,0.00018084193,0.00032081964,0.0011726621,0.0010286566,0.00046131466,0.0004771968,0.0002473543],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067840936,0.00026615936,0.51517165,0.00079139206,0.00011942624,0.0008134572,0.0022715612,0.0003020883,0.13150837,0.0025950545,0.0011521844,0.34433025],"study_design_scores_gemma":[0.000063579304,0.0018912996,0.9104103,0.0012153628,0.00016344132,0.009011166,0.0072677517,0.0025978305,0.036339518,0.014106028,0.01688539,0.000048227084],"about_ca_topic_score_codex":0.00058894354,"about_ca_topic_score_gemma":0.0006283323,"teacher_disagreement_score":0.0022046587,"about_ca_system_score_codex":0.00019519783,"about_ca_system_score_gemma":0.00020813338,"threshold_uncertainty_score":0.011659503},"labels":[],"label_agreement":null},{"id":"W2030263700","doi":"10.1128/jcm.43.10.5319-5323.2005","title":"Multilocus Sequence Typing of <i>Escherichia coli</i> O26:H11 Isolates Carrying <i>stx</i> in Canada Does Not Identify Genetic Diversity","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saskatchewan Health; BC Centre for Disease Control; Provincial Laboratory of Public Health","funders":"","keywords":"Multilocus sequence typing; Biology; Typing; Escherichia coli; Genetics; Serotype; Genetic diversity; Sequence (biology); Microbiology; Genotype; Gene; Population","score_opus":0.03808846041468986,"score_gpt":0.33988272069753883,"score_spread":0.30179426028284895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030263700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99519485,0.00020506795,0.0004296353,0.000094307106,0.000010291555,0.00002660848,0.0011622428,0.000009336118,0.0028677175],"genre_scores_gemma":[0.99552995,0.00023618624,0.0006844652,0.00007394516,0.0000026884095,0.000004307183,0.0016955499,0.000006175125,0.0017666259],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99961555,0.000011682436,0.000019446388,0.00005133482,0.0001741572,0.00012790726],"domain_scores_gemma":[0.99886346,0.00006225722,0.00015625333,0.000029767316,0.00064821966,0.00024012312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021939602,0.00026491794,0.00023788803,0.0007582631,0.0008598882,0.0006947327,0.00031786042,0.00021755605,0.0014537221],"category_scores_gemma":[0.0007471282,0.00016895986,0.00023385651,0.0014982048,0.00037494695,0.00014680681,0.0002392665,0.00034931686,0.00021627912],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065013004,0.00008426344,0.85198045,0.00015257613,0.000082850165,0.0007008767,0.0016552643,0.00038301104,0.12419137,0.00027132613,0.001247698,0.01860009],"study_design_scores_gemma":[0.0000073000942,0.00009281285,0.98594356,0.000018559827,0.000027772174,0.00029618372,0.0013292623,0.00016438728,0.009464271,0.000017987653,0.0026291448,0.0000088112565],"about_ca_topic_score_codex":0.89569795,"about_ca_topic_score_gemma":0.95143765,"teacher_disagreement_score":0.10430205,"about_ca_system_score_codex":0.003763093,"about_ca_system_score_gemma":0.006361988,"threshold_uncertainty_score":0.20983255},"labels":[],"label_agreement":null},{"id":"W2030368218","doi":"10.1128/jcm.00735-08","title":"<i>Mycobacterium haemophilum</i> Epididymal Abscess in a Renal Transplant Patient","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Renal transplant; Abscess; Medicine; Microbiology; Pathology; Biology; Surgery; Internal medicine; Kidney","score_opus":0.0650667377382015,"score_gpt":0.36234799796278083,"score_spread":0.29728126022457935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030368218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98310053,0.0014624932,0.0007603091,0.0034850626,0.00024121534,0.000096593336,0.0001659296,0.00011331235,0.010574578],"genre_scores_gemma":[0.9971432,0.0003942758,0.00031735987,0.00078511296,0.0004472347,0.00001018636,0.00005388918,0.000015770955,0.0008330866],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99956924,0.00005441626,0.000048911177,0.000104592014,0.000050761406,0.00017218936],"domain_scores_gemma":[0.9988186,0.00036558852,0.00021039823,0.00005257117,0.00005462602,0.00049818284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032468958,0.0013224869,0.0010253638,0.0014065598,0.0028965,0.0012846066,0.0008885531,0.0040286686,0.0033892149],"category_scores_gemma":[0.0027901093,0.000848615,0.00069941516,0.001100502,0.0015576489,0.0017707901,0.0009591742,0.0030201941,0.00073432224],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009760135,0.000055290206,0.020901464,0.000034634984,0.00001149817,0.9764298,0.00023032841,0.000072150266,0.0006768237,0.00011770332,0.0004887112,0.0008840597],"study_design_scores_gemma":[0.000026281534,0.00017979536,0.028083673,0.000023006978,0.0000209297,0.9698327,0.00032691716,0.0003129076,0.0005239986,0.00013735586,0.000510567,0.000021905476],"about_ca_topic_score_codex":0.0036810753,"about_ca_topic_score_gemma":0.0035843486,"teacher_disagreement_score":0.0040286686,"about_ca_system_score_codex":0.0010940838,"about_ca_system_score_gemma":0.00068053487,"threshold_uncertainty_score":0.011338055},"labels":[],"label_agreement":null},{"id":"W2030799955","doi":"10.1128/jcm.00535-13","title":"Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Biology; Typing; Streptococcus suis; Outbreak; Genome; Serotype; Multilocus sequence typing; Whole genome sequencing; Population; Microbiology; Virology; Genetics; Genotype; Gene; Virulence; Medicine","score_opus":0.2725936379775893,"score_gpt":0.4425098424017636,"score_spread":0.16991620442417432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030799955","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.050056033,0.010695492,0.9294608,0.0017928429,0.0003083867,0.00033159196,0.0025275976,0.0020438738,0.0027833804],"genre_scores_gemma":[0.100794636,0.0028881084,0.8919665,0.00074122375,0.00019439407,0.00022248506,0.0026993016,0.00017845309,0.00031489032],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9939557,0.0030634443,0.00071684056,0.0008840014,0.001202954,0.00017716164],"domain_scores_gemma":[0.9926641,0.0020246054,0.0012099801,0.0017935763,0.0017011217,0.00060664763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010047587,0.0011462212,0.0026434062,0.0073745605,0.000712338,0.003217371,0.0018187776,0.0015610141,0.00071943796],"category_scores_gemma":[0.014399068,0.000697943,0.0012355278,0.004725805,0.0011603715,0.0027636215,0.0027613766,0.0028849975,0.0006882554],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008056295,0.00039654056,0.087444425,0.0020046993,0.0005403438,0.00058620045,0.0014627315,0.010507375,0.15291189,0.028041134,0.008985558,0.70631343],"study_design_scores_gemma":[0.00023894382,0.0024661724,0.25660703,0.0036323094,0.0014992818,0.007393143,0.0029944128,0.29485515,0.091994725,0.17013517,0.16721758,0.0009659913],"about_ca_topic_score_codex":0.0017517979,"about_ca_topic_score_gemma":0.001632098,"teacher_disagreement_score":0.010047587,"about_ca_system_score_codex":0.0010314117,"about_ca_system_score_gemma":0.0022634184,"threshold_uncertainty_score":0.053137362},"labels":[],"label_agreement":null},{"id":"W2033356031","doi":"10.1128/jcm.43.5.2080-2091.2005","title":"Use of the Oxford Multilocus Sequence Typing Protocol and Sequencing of the Flagellin Short Variable Region To Characterize Isolates from a Large Outbreak of Waterborne <i>Campylobacter</i> sp. Strains in Walkerton, Ontario, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care; Ministry of Agriculture, Food and Rural Affairs; Public Health Agency of Canada","funders":"Naval Medical Research Center; Health Canada","keywords":"Flagellin; Multilocus sequence typing; Biology; Outbreak; Typing; Campylobacter; Microbiology; Campylobacter jejuni; Sequence (biology); Genetics; Virology; Bacteria; Genotype; Gene","score_opus":0.08600702493165299,"score_gpt":0.2920464546383521,"score_spread":0.2060394297066991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033356031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99482095,0.00017738013,0.0026178623,0.000040146428,0.00000774554,0.00037879244,0.0006771177,0.000011367772,0.0012686729],"genre_scores_gemma":[0.9686573,0.00062919327,0.024676083,0.000106935964,0.0000057109173,0.00027846303,0.003590823,0.000016758111,0.0020387843],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99916553,0.0000919939,0.00008845844,0.00017765089,0.000336639,0.00013967762],"domain_scores_gemma":[0.9991781,0.00014401834,0.0001549236,0.00006824642,0.0003264486,0.00012812496],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005909292,0.00036221073,0.0002846593,0.0008693658,0.0010312761,0.0005858718,0.00037877905,0.00031241114,0.00032987617],"category_scores_gemma":[0.0014219703,0.0003059895,0.00021559186,0.0011747669,0.00057429745,0.00020651756,0.00035678624,0.00031321993,0.00016390796],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005872698,0.00025704407,0.21400408,0.00021840111,0.0000643046,0.00095252955,0.002147911,0.0007957445,0.75481087,0.000200222,0.00030574529,0.025655804],"study_design_scores_gemma":[0.00008091943,0.0010308794,0.86750424,0.000049369388,0.00011998439,0.0014271026,0.002507261,0.0028846718,0.11851331,0.00007340257,0.0057604895,0.000048293266],"about_ca_topic_score_codex":0.5730418,"about_ca_topic_score_gemma":0.7789598,"teacher_disagreement_score":0.4269582,"about_ca_system_score_codex":0.0026562156,"about_ca_system_score_gemma":0.004995224,"threshold_uncertainty_score":0.85894525},"labels":[],"label_agreement":null},{"id":"W2034436648","doi":"10.1128/jcm.00934-06","title":"<i>Candida albicans</i>Strain Maintenance, Replacement, and Microvariation Demonstrated by Multilocus Sequence Typing","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Toronto; Wellcome Trust","keywords":"Multilocus sequence typing; Biology; Typing; Candida albicans; Genetics; Corpus albicans; Strain (injury); Candida dubliniensis; Microbiology; Locus (genetics); Genotype; Gene","score_opus":0.030361899223997863,"score_gpt":0.35134558004744637,"score_spread":0.3209836808234485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034436648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982502,0.00023812341,0.0010342287,0.000022833667,0.0000037856985,0.000015046648,0.00010020481,0.000012476333,0.00032308308],"genre_scores_gemma":[0.9986682,0.000044730372,0.0011007045,0.000019240166,0.000003927691,0.0000053619733,0.00010516537,0.000003592742,0.000049095794],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992405,0.000119314296,0.00013861492,0.00018367016,0.00018385293,0.00013409957],"domain_scores_gemma":[0.9991128,0.00022550613,0.000290244,0.00014215549,0.00013294714,0.00009633089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075197424,0.00021062345,0.00024859127,0.00054664735,0.00023754739,0.00063627004,0.00020660993,0.00020425669,0.00038486748],"category_scores_gemma":[0.0018714045,0.00012601653,0.00022564191,0.00040554788,0.00040194864,0.00023484523,0.0004172985,0.00033279776,0.00011477392],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007902238,0.000074236246,0.46680194,0.00011048739,0.00007314243,0.0015346787,0.00077573775,0.00042591745,0.5085463,0.00033245128,0.00020000347,0.020334963],"study_design_scores_gemma":[0.000026788073,0.00085285184,0.7748801,0.000035525478,0.00012653435,0.01022489,0.0005025155,0.002446788,0.20859611,0.00027108006,0.0019856866,0.000051164396],"about_ca_topic_score_codex":0.0015969003,"about_ca_topic_score_gemma":0.00090802804,"teacher_disagreement_score":0.0015969003,"about_ca_system_score_codex":0.00016577523,"about_ca_system_score_gemma":0.00019138769,"threshold_uncertainty_score":0.0039768815},"labels":[],"label_agreement":null},{"id":"W2035094548","doi":"10.1128/jcm.03185-14","title":"Improved Serodiagnosis of Bovine Brucellosis by Novel Synthetic Oligosaccharide Antigens Representing the Capping M Epitope Elements of Brucella O-Polysaccharide","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Brucella: diagnosis, epidemiology, treatment","field":"Veterinary","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Brucella; Antigen; Epitope; Microbiology; Complement fixation test; Brucella melitensis; Biology; Brucellaceae; Direct agglutination test; Bovine serum albumin; Serology; Antibody; Brucellosis; Virology; Biochemistry; Immunology","score_opus":0.16410394419104357,"score_gpt":0.41201186107577514,"score_spread":0.24790791688473157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035094548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913851,0.00040377874,0.007211093,0.000027114329,0.0000103154935,0.000037550322,0.00007125725,0.000056007048,0.0007977896],"genre_scores_gemma":[0.9885194,0.00033886902,0.010214235,0.000039511608,0.0000065091617,0.000018344628,0.00027108568,0.000006793004,0.0005853144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998079,0.00005256832,0.000014412663,0.00003428341,0.00004523477,0.000045523168],"domain_scores_gemma":[0.99987304,0.000025953419,0.000036704703,0.000016434531,0.000024680377,0.000023224062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024658738,0.0005130297,0.00017663832,0.00024277387,0.0000575598,0.00018957528,0.0002029585,0.00025973708,0.00027338887],"category_scores_gemma":[0.00029099,0.00012146287,0.0001734591,0.0001499047,0.0001656152,0.00015168535,0.00017949716,0.00037678532,0.0001079789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000074361975,0.00004766843,0.00037904197,0.000016684353,0.0000030644712,0.000021645152,0.000006732652,0.000113302645,0.99704546,0.000025678919,0.000008569184,0.0022576803],"study_design_scores_gemma":[0.00002042058,0.0011411562,0.00589078,0.0000064269207,0.000022385098,0.00024372517,0.000010112797,0.0028967587,0.989057,0.000023365916,0.0006824095,0.0000054299176],"about_ca_topic_score_codex":0.0006533235,"about_ca_topic_score_gemma":0.00077017024,"teacher_disagreement_score":0.0006533235,"about_ca_system_score_codex":0.00021432503,"about_ca_system_score_gemma":0.00012677486,"threshold_uncertainty_score":0.0015550256},"labels":[],"label_agreement":null},{"id":"W2035366758","doi":"10.1128/jcm.00682-12","title":"Recovery of Influenza B Virus with the H273Y Point Mutation in the Neuraminidase Active Site from a Human Patient","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Mount Sinai Hospital; Public Health Agency of Canada; University of Toronto; Public Health Ontario","funders":"Centers for Disease Control and Prevention; GlaxoSmithKline","keywords":"Oseltamivir; Zanamivir; Neuraminidase; Virology; Neuraminidase inhibitor; Human influenza; Point mutation; Mutation; Influenza A virus; Influenzavirus B; Virus; Microbiology; Resistance mutation; Drug resistance; Biology; Orthomyxoviridae; Medicine; Coronavirus disease 2019 (COVID-19); Gene; Genetics; Polymerase chain reaction; Infectious disease (medical specialty); Disease; Reverse transcriptase","score_opus":0.11661437438733196,"score_gpt":0.44292994965407056,"score_spread":0.3263155752667386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035366758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937715,0.00053089205,0.001795102,0.0006510041,0.000088693174,0.00011382978,0.0005663264,0.000049309947,0.0024333366],"genre_scores_gemma":[0.9942905,0.00034864663,0.0016024291,0.000329447,0.000039709776,0.000028189992,0.000767563,0.000019707693,0.0025738575],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9997521,0.000043637458,0.000022647408,0.000072790324,0.0000617661,0.000047105375],"domain_scores_gemma":[0.9997886,0.000058307352,0.000018133574,0.000041253505,0.00003157766,0.00006220972],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021929188,0.00043768957,0.0003905739,0.0002511712,0.00071921456,0.00047699828,0.0002591318,0.00082835497,0.0015622572],"category_scores_gemma":[0.00076023326,0.00019503394,0.00044507478,0.00011939928,0.00034603337,0.00023737122,0.00034733355,0.0011864976,0.0007857599],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019358846,0.0008310263,0.09247208,0.00022537916,0.00017646722,0.17766365,0.0032059473,0.0005591434,0.6781647,0.0012619105,0.006955484,0.036548287],"study_design_scores_gemma":[0.00019979762,0.00556527,0.12276878,0.000078237426,0.00014958264,0.48731583,0.0018672359,0.002404895,0.3447277,0.00039067047,0.034446694,0.00008535375],"about_ca_topic_score_codex":0.0019830936,"about_ca_topic_score_gemma":0.0010989311,"teacher_disagreement_score":0.0019830936,"about_ca_system_score_codex":0.00017174537,"about_ca_system_score_gemma":0.00025341113,"threshold_uncertainty_score":0.005226314},"labels":[],"label_agreement":null},{"id":"W2036034834","doi":"10.1128/jcm.00758-10","title":"<i>Coxiella burnetii</i> Infection of a Steller Sea Lion ( <i>Eumetopias jubatus</i> ) Found in Washington State","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Coxiella burnetii; Q fever; Sea lion; Fishery; Biology; Zoology; Veterinary medicine; Geography; Microbiology; Medicine","score_opus":0.021532890548236986,"score_gpt":0.31873716624786785,"score_spread":0.29720427569963087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036034834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992686,0.000021964059,0.00002357881,0.00003951077,0.0000037044279,0.000005614201,0.0000335102,0.0000013689714,0.0006021945],"genre_scores_gemma":[0.9994222,0.0000449088,0.000052165964,0.000045514673,0.0000037682087,0.000002432616,0.000063369625,7.0562436e-7,0.00036494667],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99990785,0.000014784238,0.000010054091,0.000021487915,0.000013784447,0.00003199465],"domain_scores_gemma":[0.9998568,0.000023340297,0.000027576705,0.0000072139287,0.000032852247,0.000052215735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010323562,0.0002509522,0.00012548975,0.0004964711,0.0012200199,0.0003140392,0.00018314781,0.000621256,0.00096644665],"category_scores_gemma":[0.00028881148,0.00025744323,0.00018051651,0.00020955397,0.00042493484,0.00022022113,0.0002598161,0.00042438085,0.00015066938],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003898636,0.00030412048,0.909147,0.00004085967,0.000046067784,0.043145243,0.005041353,0.00011235537,0.03800881,0.00007078121,0.000517535,0.0031759106],"study_design_scores_gemma":[0.000012178334,0.001024079,0.9641454,0.000028895382,0.00005015074,0.024126504,0.006501275,0.00020418644,0.002898027,0.000029238721,0.0009658787,0.0000140647935],"about_ca_topic_score_codex":0.03859573,"about_ca_topic_score_gemma":0.061355554,"teacher_disagreement_score":0.03859573,"about_ca_system_score_codex":0.00049914734,"about_ca_system_score_gemma":0.00031430158,"threshold_uncertainty_score":0.07674217},"labels":[],"label_agreement":null},{"id":"W2036581361","doi":"10.1128/jcm.01764-06","title":"Not So Pretty in Pink: <i>Staphylococcus cohnii</i> Masquerading as Methicillin-Resistant <i>Staphylococcus aureus</i> on Chromogenic Media","year":2006,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; Health Sciences Centre; University of Manitoba","funders":"","keywords":"Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Microbiology; Chromogenic; Pathogen; Staphylococcal infections; Micrococcaceae; Meticillin; Medicine; Biology; Bacteria; Antibacterial agent; Antibiotics; Chemistry","score_opus":0.043015966393921606,"score_gpt":0.3448268417823131,"score_spread":0.30181087538839146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036581361","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.024844194,0.005086407,0.0011509089,0.91001487,0.022253355,0.00016085149,0.00014295585,0.00021298285,0.0361335],"genre_scores_gemma":[0.15967199,0.010079635,0.0027928648,0.7365311,0.051854003,0.00013547899,0.00013615796,0.00010212553,0.03869672],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9988925,0.00035300155,0.00011802806,0.00018371687,0.00028884452,0.00016392997],"domain_scores_gemma":[0.9985935,0.0007478074,0.00016189026,0.00006180853,0.00022292882,0.00021196221],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061253447,0.0013831062,0.0009431146,0.0005986306,0.0020105143,0.0013855201,0.0008965787,0.017244974,0.003953289],"category_scores_gemma":[0.0077889194,0.00053270435,0.00080692396,0.00052321807,0.0015835321,0.0021588595,0.0005688448,0.010505342,0.0037184588],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032829464,0.00014955885,0.0061030956,0.00030225236,0.00003971712,0.48436773,0.0011223195,0.00023991398,0.0035327766,0.0025052764,0.48283258,0.018476494],"study_design_scores_gemma":[0.00019539571,0.0005275377,0.010148352,0.0005195314,0.00009005718,0.63394225,0.0020696516,0.0015070362,0.0019726148,0.006706788,0.3422006,0.00012014927],"about_ca_topic_score_codex":0.004287835,"about_ca_topic_score_gemma":0.0050723525,"teacher_disagreement_score":0.017244974,"about_ca_system_score_codex":0.0019440046,"about_ca_system_score_gemma":0.00063261425,"threshold_uncertainty_score":0.014104784},"labels":[],"label_agreement":null},{"id":"W2037237053","doi":"10.1128/jcm.42.11.5036-5040.2004","title":"Longitudinal Study of Hepatitis Activity and Viral Replication before and after HBeAg Seroconversion in Chronic Hepatitis B Patients Infected with Genotypes B and C","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Seroconversion; HBeAg; Genotype; Medicine; Hepatitis B virus; Cirrhosis; Virology; Hepatitis B; Orthohepadnavirus; Hepadnaviridae; Internal medicine; Gastroenterology; Immunology; Asymptomatic; Virus; Biology; HBsAg; Gene; Genetics","score_opus":0.020719936872168006,"score_gpt":0.3282494789855921,"score_spread":0.3075295421134241,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037237053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99970704,0.00011289767,0.000031571588,0.000010353371,0.0000022324168,0.0000027549743,0.00004741546,0.0000013021051,0.00008441022],"genre_scores_gemma":[0.99969757,0.000040050614,0.000031687963,0.000013666256,0.000005291779,0.0000038522453,0.00014412786,7.765325e-7,0.0000630533],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99953914,0.00014110391,0.000043842796,0.000079646656,0.000072759416,0.00012345341],"domain_scores_gemma":[0.99735594,0.00049123133,0.0010513536,0.0001615771,0.0003170615,0.0006228108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077584625,0.00023925329,0.00033540657,0.00068014296,0.00061945274,0.00051199505,0.00019093565,0.000488449,0.0006350021],"category_scores_gemma":[0.0028380193,0.00027973263,0.00033949479,0.0005819843,0.00024095901,0.00047251876,0.00029776053,0.00060026976,0.00018319776],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023769312,0.000033171298,0.9985268,0.0000030239626,0.000024890043,0.00003868403,0.00009443938,0.000013658181,0.00027367912,0.0000046696323,0.000018971912,0.0007303722],"study_design_scores_gemma":[0.00001036847,0.0002855444,0.99909043,0.0000031512195,0.000019020024,0.00018586629,0.00013652846,0.00010919818,0.000054214845,0.000009283438,0.00009266195,0.0000038156168],"about_ca_topic_score_codex":0.0064063943,"about_ca_topic_score_gemma":0.0044485424,"teacher_disagreement_score":0.0064063943,"about_ca_system_score_codex":0.00027726384,"about_ca_system_score_gemma":0.00032734548,"threshold_uncertainty_score":0.012738228},"labels":[],"label_agreement":null},{"id":"W2037850277","doi":"10.1128/jcm.41.3.1342-1343.2003","title":"Identification of a Genotype III Swine Hepatitis E Virus That Was Isolated from a Japanese Pig Born in 1990 and That Is Most Closely Related to Japanese Isolates of Human Hepatitis E Virus","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis Viruses Studies and Epidemiology","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Genotype; Virology; Biology; Virus; Flaviviridae; Hepatitis a virus; Hepatitis; Viral disease; Identification (biology); Pig liver; Genetics; Gene","score_opus":0.05007694183564485,"score_gpt":0.35533252762999584,"score_spread":0.30525558579435097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037850277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99935395,0.00015285496,0.00023613016,0.000014029376,0.000018014367,0.000011357759,0.00004222484,0.0000024421054,0.00016888551],"genre_scores_gemma":[0.9978531,0.00026302034,0.0010755978,0.00011247862,0.000028471666,0.000015922142,0.00027933536,0.000004906805,0.00036724066],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998696,0.000011564619,0.000014733987,0.000038622507,0.000026957072,0.000038444792],"domain_scores_gemma":[0.9996444,0.00004727216,0.00006778991,0.000024820021,0.00006974855,0.00014603975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017590603,0.00060300634,0.0005704187,0.00074355694,0.0007118298,0.00041254083,0.00017585118,0.00070170517,0.00045100422],"category_scores_gemma":[0.0003728182,0.0003736186,0.0005564348,0.00038774792,0.0003921092,0.0002217817,0.00034361138,0.00042044572,0.00019290207],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004615843,0.00017040015,0.60693485,0.00010381691,0.00007904575,0.021262951,0.0017407921,0.00006215304,0.36350837,0.000055869736,0.00015685533,0.0054633296],"study_design_scores_gemma":[0.000015616186,0.0010298798,0.9690465,0.000018602777,0.0000764638,0.017155048,0.0008893601,0.00018077565,0.010264342,0.000015261347,0.0012878692,0.000020232002],"about_ca_topic_score_codex":0.006744153,"about_ca_topic_score_gemma":0.008546112,"teacher_disagreement_score":0.006744153,"about_ca_system_score_codex":0.00030333526,"about_ca_system_score_gemma":0.00028923585,"threshold_uncertainty_score":0.013409793},"labels":[],"label_agreement":null},{"id":"W2039545947","doi":"10.1128/jcm.03088-12","title":"Multilaboratory Study of the Biomic Automated Well-Reading Instrument versus MicroScan WalkAway for Reading MicroScan Antimicrobial Susceptibility and Identification Panels","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Grand River Hospital","funders":"","keywords":"Gram; Microbiology; Gram-positive bacteria; Biology; Antimicrobial; Bacteria; Gram-negative bacteria; Escherichia coli; Genetics","score_opus":0.04179501680538904,"score_gpt":0.35192156412511344,"score_spread":0.3101265473197244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039545947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97413266,0.0013921782,0.019761281,0.00015653919,0.00029402203,0.00028653853,0.00020544571,0.00017471572,0.003596534],"genre_scores_gemma":[0.9878479,0.00012496214,0.010384227,0.00016430226,0.000089946785,0.0001331356,0.0003418506,0.00011105558,0.0008025476],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.88368964,0.060706865,0.0068633826,0.016061436,0.030471984,0.0022066159],"domain_scores_gemma":[0.69459015,0.22487096,0.026149724,0.019513123,0.032211505,0.0026645549],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.08552724,0.00084931,0.000662228,0.0019422938,0.00082578696,0.002452034,0.0023024268,0.0017622103,0.0019316208],"category_scores_gemma":[0.21192916,0.0013456816,0.00070532254,0.0013536736,0.0018334925,0.0021834986,0.0029847994,0.0016345092,0.0014521733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03478728,0.002056586,0.80940366,0.00079765747,0.0016735578,0.0004233063,0.0055626994,0.0029716294,0.049680877,0.0009174932,0.0011813681,0.09054385],"study_design_scores_gemma":[0.00057659467,0.041093457,0.84365124,0.00022517925,0.0010096896,0.0020051221,0.0015844496,0.019915342,0.08247992,0.00065710035,0.006567555,0.00023430483],"about_ca_topic_score_codex":0.0014871923,"about_ca_topic_score_gemma":0.0019368264,"teacher_disagreement_score":0.08552724,"about_ca_system_score_codex":0.0011212175,"about_ca_system_score_gemma":0.00095007435,"threshold_uncertainty_score":0.4523167},"labels":[],"label_agreement":null},{"id":"W2039713661","doi":"10.1128/jcm.42.2.841-843.2004","title":"Use of an Internal Positive Control in a Multiplex Reverse Transcription-PCR To Detect West Nile Virus RNA in Mosquito Pools","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control","funders":"","keywords":"Biology; Virology; West Nile virus; RNA; Virus; RNA extraction; TaqMan; Multiplex; Reverse transcription polymerase chain reaction; Reverse transcriptase; Real-time polymerase chain reaction; Gene; Genetics; Messenger RNA","score_opus":0.04000467099635293,"score_gpt":0.3576499944575625,"score_spread":0.3176453234612096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039713661","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.35353082,0.0027695526,0.62882376,0.00024553342,0.00091157766,0.0040394403,0.0018822282,0.0024825209,0.0053145774],"genre_scores_gemma":[0.18372308,0.001659653,0.7944808,0.0005876013,0.00018886854,0.008502283,0.00444081,0.00044054884,0.00597629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99130064,0.0014611353,0.00067485997,0.0035068602,0.0025486883,0.00050772954],"domain_scores_gemma":[0.9966229,0.0012748591,0.0003343297,0.0005990827,0.001045038,0.00012383574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0056399237,0.0023521283,0.0014244633,0.001334767,0.0008203565,0.0013746826,0.0014197282,0.0011568817,0.0021847633],"category_scores_gemma":[0.0038054413,0.0013819173,0.001108998,0.0010179799,0.0016063038,0.0006697435,0.000790934,0.0014388278,0.0013150359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011567946,0.000114800256,0.0008288593,0.00017040111,0.000022453563,0.00006469158,0.00016518016,0.00020987658,0.99322,0.00021229038,0.00013643703,0.0047392836],"study_design_scores_gemma":[0.000052565505,0.0010925882,0.0038742414,0.000075147116,0.00018280027,0.00034592208,0.000080850215,0.004047202,0.9828027,0.00023909185,0.0071677812,0.000039096092],"about_ca_topic_score_codex":0.0009178683,"about_ca_topic_score_gemma":0.002484897,"teacher_disagreement_score":0.0056399237,"about_ca_system_score_codex":0.0006632591,"about_ca_system_score_gemma":0.0014998291,"threshold_uncertainty_score":0.029827118},"labels":[],"label_agreement":null},{"id":"W2040994939","doi":"10.1128/jcm.00162-14","title":"Travel-Related Carbapenemase-Producing Gram-Negative Bacteria in Alberta, Canada: the First 3 Years","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Calgary Laboratory Services; University of Saskatchewan; University of Alberta; University of Calgary","funders":"Instituto Universitario de Tecnología Industrial de Asturias","keywords":"Microbiology; Enterobacter cloacae; Klebsiella pneumoniae; Acinetobacter baumannii; Multilocus sequence typing; Citrobacter freundii; Biology; Broth microdilution; Klebsiella oxytoca; Antibiotic resistance; Acinetobacter; Bacteria; Escherichia coli; Antimicrobial; Antibiotics; Pseudomonas aeruginosa; Minimum inhibitory concentration; Genotype; Gene; Genetics","score_opus":0.011342936010372765,"score_gpt":0.2707748302844209,"score_spread":0.2594318942740481,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040994939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99291503,0.002295692,0.0001271802,0.000235758,0.000034947385,0.00004432855,0.0014727992,0.000015025365,0.0028593645],"genre_scores_gemma":[0.99524564,0.0014352398,0.00024289136,0.00023306986,0.00003416435,0.000009782857,0.0016067772,0.000006140034,0.0011863393],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932003,0.00002685496,0.00003282046,0.00006430556,0.00025863614,0.00029732892],"domain_scores_gemma":[0.9987342,0.000041163534,0.0001758683,0.000019822619,0.0006076082,0.00042138994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002921776,0.0006026648,0.00038368898,0.0016387578,0.0018600515,0.0014288381,0.0008618372,0.000737098,0.0011318275],"category_scores_gemma":[0.0010392219,0.00031187397,0.000355632,0.002436459,0.0005894088,0.00036464323,0.0008257409,0.00068702176,0.00022694598],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014275168,0.00004450036,0.9874986,0.00004522977,0.000031051273,0.0017931149,0.000962722,0.00013269171,0.00062024826,0.000047551526,0.0010040428,0.00767762],"study_design_scores_gemma":[0.000006411739,0.000058977283,0.9943269,0.000040556457,0.000032958586,0.0014219816,0.0017226945,0.00016312828,0.00011126663,0.000015462825,0.0020839658,0.000015771333],"about_ca_topic_score_codex":0.9656893,"about_ca_topic_score_gemma":0.97899264,"teacher_disagreement_score":0.0343107,"about_ca_system_score_codex":0.013419748,"about_ca_system_score_gemma":0.015132668,"threshold_uncertainty_score":0.097367525},"labels":[],"label_agreement":null},{"id":"W2041276342","doi":"10.1128/jcm.44.5.1909-1911.2006","title":"<i>Campylobacter curvus</i> -Associated Hepatic Abscesses: a Case Report","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Campylobacter; Biology; 16S ribosomal RNA; Microbiology; Isolation (microbiology); Bacteria; Gram staining; Staining; Identification (biology); Pathology; Medicine; Antibiotics","score_opus":0.03883160805738685,"score_gpt":0.32155844134681555,"score_spread":0.2827268332894287,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041276342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9692904,0.0046030767,0.0023306077,0.0043863924,0.00064711605,0.00022581959,0.00022143642,0.0002907775,0.018004535],"genre_scores_gemma":[0.9919308,0.0013830182,0.0014936352,0.001293983,0.001885513,0.00005112794,0.000110841625,0.000047279394,0.0018038902],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9985464,0.00020446228,0.00014715984,0.00031950645,0.00019151758,0.0005909737],"domain_scores_gemma":[0.9970023,0.00088395056,0.0007750319,0.00031910275,0.00014720073,0.0008722906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066357176,0.0045366073,0.0017728902,0.0027019843,0.005423938,0.003404576,0.0017014878,0.0081868805,0.0038655312],"category_scores_gemma":[0.0054613748,0.0029119775,0.0015564093,0.0020669312,0.0041114287,0.0035530527,0.0024205844,0.0045424104,0.002001337],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031534822,0.000051013023,0.004578014,0.00003278421,0.000009075414,0.99378806,0.0001622513,0.000026687407,0.0004107836,0.00007978368,0.00029577856,0.00053422735],"study_design_scores_gemma":[0.000013927916,0.00007533857,0.0024260231,0.000009552463,0.000009352554,0.9966569,0.0001465534,0.0000718497,0.0002072887,0.00005308987,0.00031749532,0.000012528307],"about_ca_topic_score_codex":0.0031619335,"about_ca_topic_score_gemma":0.0038536848,"teacher_disagreement_score":0.0081868805,"about_ca_system_score_codex":0.0016803241,"about_ca_system_score_gemma":0.0009621832,"threshold_uncertainty_score":0.012931526},"labels":[],"label_agreement":null},{"id":"W2042482682","doi":"10.1128/jcm.41.11.4930-4940.2003","title":"Association of Genomic O Island 122 of <i>Escherichia coli</i> EDL 933 with Verocytotoxin-Producing <i>Escherichia coli</i> Seropathotypes That Are Linked to Epidemic and/or Serious Disease","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":478,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; McMaster University; Health Canada","funders":"Health Canada","keywords":"Serotype; VTEC; Verocytotoxin; Virulence; Outbreak; Escherichia coli; Microbiology; Virology; Biology; Diarrhea; Gene; Genetics; Medicine","score_opus":0.026434140650781417,"score_gpt":0.31432768144461176,"score_spread":0.28789354079383034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042482682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99954873,0.000028465813,0.000087237895,0.0000097247375,0.000001408392,0.0000031715972,0.00013275031,0.00000196427,0.00018643917],"genre_scores_gemma":[0.9992459,0.00002611819,0.00012897355,0.00002555992,0.000002163888,0.0000028039692,0.0004758954,0.0000024327412,0.000090191366],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997762,0.000032765936,0.000024047538,0.000053453303,0.00004528578,0.000068236695],"domain_scores_gemma":[0.99906856,0.0001172111,0.0004641177,0.00005762852,0.00011816939,0.00017438475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012984386,0.00028329395,0.0001730212,0.000405696,0.00017266194,0.00035372513,0.00011933554,0.00033531274,0.0009362298],"category_scores_gemma":[0.0007041194,0.0001753987,0.00019809256,0.00051859504,0.0002902267,0.00010235801,0.00026953698,0.00034841587,0.0001801635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010797607,0.0001031877,0.8340877,0.000038131195,0.00007060322,0.00063334993,0.00021523086,0.00013585319,0.16067968,0.000056695695,0.00011974947,0.0027799937],"study_design_scores_gemma":[0.000011041713,0.00020110738,0.991475,0.0000071550367,0.000019677695,0.0011115152,0.000219122,0.00017172123,0.006370754,0.000018295419,0.00038872298,0.000005949779],"about_ca_topic_score_codex":0.0042861155,"about_ca_topic_score_gemma":0.0033576794,"teacher_disagreement_score":0.0042861155,"about_ca_system_score_codex":0.0002211725,"about_ca_system_score_gemma":0.0001452498,"threshold_uncertainty_score":0.008522332},"labels":[],"label_agreement":null},{"id":"W2043142672","doi":"10.1128/jcm.01913-10","title":"Identification by 16S rRNA Gene Sequencing of Negativicoccus succinicivorans Recovered from the Blood of a Patient with Hemochromatosis and Pancreatitis","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infective Endocarditis Diagnosis and Management","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Hemochromatosis; Biology; 16S ribosomal RNA; Coccus (insect); Ribosomal RNA; Pancreatitis; Gene; Microbiology; Clostridium; Blood culture; Bacteria; Medicine; Genetics; Internal medicine; Antibiotics","score_opus":0.02891636526046846,"score_gpt":0.28354986255340253,"score_spread":0.25463349729293405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043142672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974293,0.0003354882,0.0009712659,0.0003337299,0.000032588912,0.000022563676,0.00005862968,0.000015499003,0.00080096285],"genre_scores_gemma":[0.9978538,0.00040974977,0.0009491686,0.00021838174,0.000065241744,0.00000525599,0.00008754213,0.000011957576,0.0003990006],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99961495,0.000049294416,0.00007996239,0.00007047576,0.0001109864,0.00007430894],"domain_scores_gemma":[0.9991579,0.00025550937,0.00019828636,0.00006697787,0.00010092092,0.00022041706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025978414,0.0007180301,0.00064450176,0.0009998555,0.00089215266,0.0008824033,0.00032051821,0.0011180926,0.0005951316],"category_scores_gemma":[0.002241023,0.00052590005,0.00041119708,0.00050936814,0.0005827395,0.0005967899,0.0006348154,0.0010296598,0.00044686883],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056584366,0.00027490378,0.121924736,0.00009473134,0.000024997222,0.81681216,0.0032950302,0.00028967642,0.046304587,0.00021584834,0.00045672024,0.009740782],"study_design_scores_gemma":[0.000034631237,0.0010803207,0.09373298,0.00006769793,0.000108793894,0.86604995,0.0032304253,0.0018398107,0.030851906,0.00029619818,0.0026595471,0.000047747188],"about_ca_topic_score_codex":0.0010795298,"about_ca_topic_score_gemma":0.0008126635,"teacher_disagreement_score":0.0011180926,"about_ca_system_score_codex":0.0002626915,"about_ca_system_score_gemma":0.00027002697,"threshold_uncertainty_score":0.002146542},"labels":[],"label_agreement":null},{"id":"W2043298486","doi":"10.1128/jcm.41.11.5159-5166.2003","title":"Comparison of DNA Amplification, mRNA Amplification, and DNA Hybridization Techniques for Detection of Cytomegalovirus in Bone Marrow Transplant Recipients","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; Health Canada; University of Ottawa; Children's Hospital of Eastern Ontario","funders":"Health Canada","keywords":"Viral load; Cytomegalovirus; Betaherpesvirinae; Virology; Bone marrow; Herpesviridae; Biology; Viral disease; Molecular biology; Human cytomegalovirus; Bone marrow transplant; Real-time polymerase chain reaction; Immunology; Virus; Bone marrow transplantation; Gene","score_opus":0.07886178314823121,"score_gpt":0.4142941321349972,"score_spread":0.335432348986766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043298486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929148,0.0020539076,0.004148877,0.000055878776,0.00001831729,0.000022646504,0.00003737315,0.000046212215,0.00070207135],"genre_scores_gemma":[0.99233174,0.0010017277,0.0061270986,0.00005917243,0.000028939174,0.000046859313,0.0001100932,0.000012502796,0.0002817523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988601,0.00040894165,0.000081466984,0.00016853969,0.0003401616,0.00014082529],"domain_scores_gemma":[0.99804085,0.0012617721,0.0001956519,0.00008302321,0.0002765082,0.00014225117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016889715,0.0005629867,0.00037252775,0.0016182115,0.00023522663,0.00041574752,0.00023039707,0.00052508386,0.0005021869],"category_scores_gemma":[0.0036627932,0.0004158964,0.00025670204,0.0005335891,0.0005698753,0.00035868003,0.00023574752,0.00038723703,0.0003626677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029046559,0.00026597054,0.38133448,0.00040222713,0.00013408615,0.0010996799,0.0008527574,0.0010260158,0.5085184,0.00023160364,0.00018179393,0.103048354],"study_design_scores_gemma":[0.00023290838,0.005407951,0.76073086,0.000093366805,0.00032260292,0.011080201,0.00084336975,0.008133636,0.21070774,0.00049745623,0.0018770832,0.000072756186],"about_ca_topic_score_codex":0.0005951421,"about_ca_topic_score_gemma":0.00085754227,"teacher_disagreement_score":0.0016889715,"about_ca_system_score_codex":0.00034408868,"about_ca_system_score_gemma":0.0002179235,"threshold_uncertainty_score":0.008932233},"labels":[],"label_agreement":null},{"id":"W2043449953","doi":"10.1128/jcm.00174-14","title":"Comparative Study of Traditional Flagellum Serotyping and Liquid Chromatography–Tandem Mass Spectrometry-Based Flagellum Typing with Clinical Escherichia coli Isolates","year":2014,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; Manitoba Health; Provincial Laboratory of Public Health; University of Alberta; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Flagellum; Serotype; Typing; Escherichia coli; Microbiology; Mass spectrometry; Biology; Tandem mass spectrometry; Chromatography; Bacteria; Chemistry; Genetics; Gene","score_opus":0.05304994048187442,"score_gpt":0.31980263194446257,"score_spread":0.2667526914625882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043449953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97634435,0.0024326108,0.003960055,0.0073797596,0.0014170673,0.00013678562,0.00045647222,0.00005248149,0.007820421],"genre_scores_gemma":[0.9916557,0.0010342733,0.0018050444,0.0032209267,0.00095250236,0.000035693094,0.000389473,0.000027187301,0.00087924924],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979399,0.00043295868,0.00032732636,0.00033898687,0.00055634923,0.000404486],"domain_scores_gemma":[0.9957766,0.0021172753,0.00021811716,0.0003197065,0.0012711844,0.00029716486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016735897,0.0004530013,0.0004996017,0.0009837928,0.00053576624,0.0014706721,0.00088137056,0.0021354142,0.0013710526],"category_scores_gemma":[0.007418763,0.00028417123,0.000461203,0.00083385577,0.00069197203,0.00074434595,0.00049074955,0.0011447481,0.0007383251],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009643253,0.001694379,0.46018666,0.0008782161,0.00017265433,0.13150868,0.0053081634,0.00040667792,0.2723068,0.002132089,0.015481167,0.100281276],"study_design_scores_gemma":[0.00023211767,0.005225383,0.5192679,0.00025681203,0.00045042566,0.2690972,0.00628582,0.0022004752,0.14429943,0.0011593323,0.051410176,0.00011486188],"about_ca_topic_score_codex":0.0016696905,"about_ca_topic_score_gemma":0.0019025094,"teacher_disagreement_score":0.0021354142,"about_ca_system_score_codex":0.00074983295,"about_ca_system_score_gemma":0.00026256507,"threshold_uncertainty_score":0.008850932},"labels":[],"label_agreement":null},{"id":"W2043480113","doi":"10.1128/jcm.41.9.4468-4470.2003","title":"Virulence of <i>Rhodococcus equi</i> Isolated from Cats and Dogs","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Japan Society for the Promotion of Science","keywords":"Rhodococcus equi; Virulence; Plasmid; Microbiology; Biology; Virology; Gene; Genetics","score_opus":0.03859355041946744,"score_gpt":0.3726843604045872,"score_spread":0.33409080998511975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043480113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996251,0.00007541435,0.000035203022,0.000010776722,0.0000022573536,0.000009173244,0.000047102043,9.677179e-7,0.00019400794],"genre_scores_gemma":[0.9993049,0.000077306635,0.00017723737,0.000025276117,0.000003259561,0.000006172454,0.00027138673,0.0000015016296,0.00013294138],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993704,0.00009577799,0.00009215449,0.00010721493,0.00016388645,0.00017054567],"domain_scores_gemma":[0.9993237,0.00016605583,0.00016742639,0.000051307306,0.00017260802,0.00011893092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041317704,0.00032150705,0.00047624047,0.0006833692,0.00053060736,0.000541017,0.00023372611,0.00052531215,0.000681998],"category_scores_gemma":[0.0014151536,0.00032757586,0.00021461767,0.0003765494,0.0005467565,0.0002473939,0.0004267608,0.00036974344,0.00019182048],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010688353,0.0002902598,0.8240874,0.00017998568,0.0000697377,0.006768992,0.0022689821,0.0002019552,0.15892589,0.00020185682,0.0002583145,0.005677865],"study_design_scores_gemma":[0.000053077725,0.0018054397,0.9414155,0.00004808843,0.00009125014,0.017654413,0.002803821,0.00041358525,0.033882033,0.00008664779,0.001723465,0.000022734936],"about_ca_topic_score_codex":0.005701456,"about_ca_topic_score_gemma":0.005599138,"teacher_disagreement_score":0.005701456,"about_ca_system_score_codex":0.0005376624,"about_ca_system_score_gemma":0.00030209255,"threshold_uncertainty_score":0.011336505},"labels":[],"label_agreement":null},{"id":"W2044212770","doi":"10.1128/jcm.01845-06","title":"<i>Clostridium glycolicum</i> Bacteremia in a Bone Marrow Transplant Patient","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Bone marrow transplant; Bone marrow; Medicine; Bone marrow transplantation; Clostridiaceae; Clostridium; Clostridiales; Microbiology; Immunology; Bacteria; Biology; Antibiotics; Genetics","score_opus":0.02449307572047015,"score_gpt":0.32209316645180497,"score_spread":0.2976000907313348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044212770","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906408,0.001077169,0.0007983543,0.0019259009,0.000121065765,0.000051891133,0.000086776985,0.00007835663,0.005219764],"genre_scores_gemma":[0.99788195,0.00028681455,0.00033597395,0.0007753396,0.00019154936,0.000008718313,0.00004047108,0.000012616759,0.00046657733],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996985,0.00003144173,0.000032092757,0.00006818865,0.000035723784,0.00013401806],"domain_scores_gemma":[0.9992059,0.00019955383,0.00017320731,0.000029278674,0.00003780604,0.00035430558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019642278,0.0012237203,0.0007371005,0.0008984999,0.002341949,0.0009835385,0.0005048138,0.0028306004,0.0016421566],"category_scores_gemma":[0.0016292684,0.0007226755,0.0006261452,0.0007099045,0.0011192162,0.00087567413,0.00081595976,0.0021306835,0.0005270475],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000087790715,0.000054765507,0.018546527,0.000023596756,0.000008038397,0.97798765,0.00032636785,0.00007183181,0.0013613233,0.000099183606,0.00035585964,0.0010770987],"study_design_scores_gemma":[0.00001771297,0.0001826427,0.013791297,0.00001712553,0.000019023839,0.9842525,0.00029330788,0.00023137686,0.00063808844,0.00009904272,0.00044328521,0.000014602312],"about_ca_topic_score_codex":0.0027176659,"about_ca_topic_score_gemma":0.0022009737,"teacher_disagreement_score":0.0028306004,"about_ca_system_score_codex":0.0007667968,"about_ca_system_score_gemma":0.0005208597,"threshold_uncertainty_score":0.005563557},"labels":[],"label_agreement":null},{"id":"W2044265831","doi":"10.1128/jcm.00176-14","title":"Clinical Evaluation of the Cartridge-Based GeneXpert Human Papillomavirus Assay in Women Referred for Colposcopy","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"National Cancer Institute","keywords":"GeneXpert MTB/RIF; Colposcopy; Medicine; Cervical intraepithelial neoplasia; Cervical cancer screening; Hybrid capture; Human papillomavirus; Gynecology; Cervical cancer; Internal medicine; Obstetrics; Cancer; Pathology; Tuberculosis; Sputum","score_opus":0.216543240167082,"score_gpt":0.5403240648828648,"score_spread":0.32378082471578273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044265831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99685174,0.00042120725,0.00031720236,0.00013736388,0.000020361063,0.00030708528,0.00022062863,0.000028494218,0.0016960549],"genre_scores_gemma":[0.998254,0.00015700213,0.0007510782,0.00016631655,0.000019726416,0.000083207735,0.0002565522,0.0000067713722,0.0003053448],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9981008,0.0008227831,0.00017206368,0.00034701946,0.00046067496,0.00009666582],"domain_scores_gemma":[0.9964198,0.0012415291,0.0004332383,0.00015049835,0.001175255,0.0005797916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022762571,0.0005102674,0.0005544569,0.00049224007,0.00050458167,0.00055642636,0.00036348263,0.0007180934,0.00089050207],"category_scores_gemma":[0.010068125,0.00030129496,0.00030812266,0.00046208792,0.0004412517,0.00040363232,0.00034655462,0.00059740053,0.00045664987],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008462473,0.0023271812,0.93907356,0.000164681,0.00007227637,0.0037953975,0.0009958129,0.00051706604,0.014958014,0.000036798356,0.0013883158,0.028208511],"study_design_scores_gemma":[0.0003665702,0.02030876,0.96902823,0.00001941832,0.00007017504,0.003504565,0.0004101967,0.0019050248,0.0032086053,0.000028466096,0.001125147,0.000024780928],"about_ca_topic_score_codex":0.0030945365,"about_ca_topic_score_gemma":0.0042707943,"teacher_disagreement_score":0.0030945365,"about_ca_system_score_codex":0.0007766408,"about_ca_system_score_gemma":0.00064682594,"threshold_uncertainty_score":0.012038112},"labels":[],"label_agreement":null},{"id":"W2044735143","doi":"10.1128/jcm.39.2.730-732.2001","title":"Evaluation of a Rapid Optical Immunoassay for Influenza Viruses (FLU OIA Test) in Comparison with Cell Culture and Reverse Transcription-PCR","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Virology; Reverse transcription polymerase chain reaction; Immunoassay; Viral culture; Flu season; Medicine; Virus; Influenza A virus; Reverse transcriptase; Orthomyxoviridae; Diagnostic test; Biology; Immunology; Polymerase chain reaction; Veterinary medicine; Gene; Antibody; Vaccination; Messenger RNA; Genetics","score_opus":0.2297462523258561,"score_gpt":0.48866581679535076,"score_spread":0.25891956446949466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044735143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9746551,0.0049299668,0.014170175,0.00029331938,0.00027996395,0.0004625537,0.0006033891,0.00020222281,0.004403275],"genre_scores_gemma":[0.9669348,0.0017789636,0.027781747,0.0003330752,0.00015209957,0.00028493223,0.00089073565,0.000023624427,0.0018199345],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99293184,0.0016054825,0.00025466533,0.00080926303,0.0038017523,0.0005971424],"domain_scores_gemma":[0.9922422,0.0043937545,0.0004981716,0.00022963046,0.0022649732,0.00037123245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005320559,0.0010604822,0.00077423477,0.0018578474,0.0006122488,0.0009319729,0.0007322692,0.0008524801,0.000927925],"category_scores_gemma":[0.010159942,0.00050194544,0.00034886043,0.0008881032,0.00090538705,0.00041039684,0.0003450237,0.0006533235,0.00043646462],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0062535987,0.0014079108,0.44728622,0.0008192422,0.00030706875,0.00052300503,0.002451183,0.0008480341,0.4425843,0.00037283354,0.0009976706,0.09614891],"study_design_scores_gemma":[0.0005136578,0.01621209,0.73734987,0.00017644111,0.0005826031,0.0032877624,0.0019597914,0.012665443,0.21896064,0.00023939415,0.007873236,0.00017912738],"about_ca_topic_score_codex":0.051145043,"about_ca_topic_score_gemma":0.060269833,"teacher_disagreement_score":0.051145043,"about_ca_system_score_codex":0.001403628,"about_ca_system_score_gemma":0.0013759749,"threshold_uncertainty_score":0.1016947},"labels":[],"label_agreement":null},{"id":"W2045823452","doi":"10.1128/jcm.41.1.106-109.2003","title":"Identification of Catalase-Negative, Non-Beta-Hemolytic, Gram-Positive Cocci Isolated from Milk Samples","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Coccidia and coccidiosis research","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency; Université de Montréal; Cegep de Saint Hyacinthe","funders":"","keywords":"Microbiology; Raffinose; Biology; Gram-Positive Cocci; Aminopeptidase; Leucine; Bacteria; Food science; Biochemistry; Amino acid","score_opus":0.04602622594168575,"score_gpt":0.32953866427318884,"score_spread":0.2835124383315031,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045823452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99773943,0.0007797812,0.0009863061,0.000028884131,0.000013158199,0.000038645932,0.000050317492,0.000008014511,0.00035536475],"genre_scores_gemma":[0.9921421,0.00082500686,0.0062639792,0.000032689983,0.00001418784,0.000029806437,0.00020879462,0.000005506679,0.00047797483],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992668,0.00018963453,0.000115984076,0.0000999543,0.00022589348,0.000101693084],"domain_scores_gemma":[0.9994136,0.00018559425,0.00012251867,0.000037796843,0.00018481251,0.000055710992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006006099,0.00032177597,0.00048184834,0.00082660967,0.00025655326,0.00051679835,0.00027840497,0.0004074321,0.00037317292],"category_scores_gemma":[0.0016132063,0.00014603333,0.0001799585,0.0004419334,0.00022453752,0.00037783865,0.00030975143,0.00020492502,0.00022219445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007249235,0.00021698512,0.08886814,0.00033102723,0.000020132182,0.0013183205,0.00044933445,0.0000788567,0.8849525,0.00007869202,0.00006180473,0.022899175],"study_design_scores_gemma":[0.000050068254,0.0029058647,0.2788534,0.00007734486,0.00013216313,0.009456832,0.0018927692,0.00140396,0.70230156,0.00010842628,0.002787388,0.000030204166],"about_ca_topic_score_codex":0.0010732561,"about_ca_topic_score_gemma":0.0013372902,"teacher_disagreement_score":0.0010732561,"about_ca_system_score_codex":0.00016594699,"about_ca_system_score_gemma":0.0003263891,"threshold_uncertainty_score":0.0031763315},"labels":[],"label_agreement":null},{"id":"W2045897139","doi":"10.1128/jcm.41.9.4217-4223.2003","title":"Immunoassay Targeting Nonstructural Protein 5 To Differentiate West Nile Virus Infection from Dengue and St. Louis Encephalitis Virus Infections and from Flavivirus Vaccination","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; National Institutes of Health","keywords":"Flavivirus; Virology; Dengue virus; Dengue fever; Japanese encephalitis; Flaviviridae; NS3; Serology; Vaccination; Encephalitis; Zika virus; Biology; Virus; Antibody; Immunoassay; Dengue vaccine; Viral disease; Immunology; Hepatitis C virus","score_opus":0.014913357975238031,"score_gpt":0.3175516765004922,"score_spread":0.3026383185252542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045897139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78071356,0.008657767,0.19356757,0.00063608837,0.00074221933,0.0008186852,0.0011436521,0.0016832183,0.012037274],"genre_scores_gemma":[0.8091358,0.002123205,0.17629623,0.0009313485,0.00013362266,0.00036578914,0.0018345813,0.000058155543,0.009121359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988385,0.0003520153,0.00012065813,0.00016704437,0.00037745442,0.0001444502],"domain_scores_gemma":[0.99895287,0.0004063877,0.00020537015,0.00007991705,0.00022655571,0.00012888681],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010856687,0.0008188776,0.000280161,0.0009990147,0.00021481318,0.0003700123,0.00042122783,0.001404914,0.001859786],"category_scores_gemma":[0.0015365792,0.00029839852,0.0003710001,0.00030609974,0.00022845919,0.00042288285,0.00030268903,0.0008897921,0.0010333025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033263752,0.00031903345,0.011801284,0.00014897127,0.00005411233,0.000108214794,0.00006387762,0.00018684079,0.9573031,0.00047781545,0.00076165784,0.028442329],"study_design_scores_gemma":[0.00007465486,0.0022027704,0.053361226,0.000075541066,0.00012469066,0.0020741676,0.0001136471,0.012245668,0.9193397,0.00047018472,0.0098775085,0.000040240186],"about_ca_topic_score_codex":0.0007098246,"about_ca_topic_score_gemma":0.0020118963,"teacher_disagreement_score":0.001859786,"about_ca_system_score_codex":0.000278001,"about_ca_system_score_gemma":0.00030335668,"threshold_uncertainty_score":0.0062215924},"labels":[],"label_agreement":null},{"id":"W2046464921","doi":"10.1128/jcm.00908-07","title":"Analysis of Phenotypic Variants of the Serogroup C ET-15 Clone of <i>Neisseria meningitidis</i> by Pulsed-Field Gel Electrophoresis","year":2007,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Neisseria meningitidis; Pulsed-field gel electrophoresis; Serotype; Biology; Antigen; clone (Java method); Microbiology; Virology; Meningococcal disease; Neisseriaceae; Neisseria; Antigenic variation; Genotype; Gene; Genetics; Bacteria; Antibiotics","score_opus":0.020958986720059528,"score_gpt":0.3203782135420704,"score_spread":0.2994192268220109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046464921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988288,0.00007368652,0.0004515655,0.000011099322,0.0000039923357,0.00001767849,0.00024959608,0.000005195707,0.00035832747],"genre_scores_gemma":[0.9967353,0.00014527366,0.0017830726,0.000033055527,0.000004236182,0.000013849114,0.00089852914,0.0000050549925,0.00038158364],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997824,0.000024125744,0.000020775728,0.000052844836,0.00006947701,0.000050412396],"domain_scores_gemma":[0.9996817,0.000074274016,0.00008554774,0.000019532863,0.00007836061,0.00006049651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015748387,0.0002927436,0.0001892713,0.0005046216,0.0001678919,0.00040648572,0.00021114905,0.0002318307,0.0003829209],"category_scores_gemma":[0.000619717,0.00011177133,0.0001979321,0.00039555234,0.00023248147,0.00013478313,0.00017748128,0.00023800966,0.00012429112],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037540947,0.00010835224,0.08830961,0.00006542997,0.00002657533,0.0007711793,0.0003085332,0.00012864312,0.9055683,0.0000693963,0.000069292604,0.00419928],"study_design_scores_gemma":[0.000019707275,0.000685225,0.825981,0.00002536272,0.000060397033,0.005455367,0.00061612146,0.0011380325,0.16437355,0.00004538995,0.0015793887,0.000020535519],"about_ca_topic_score_codex":0.014132695,"about_ca_topic_score_gemma":0.010507047,"teacher_disagreement_score":0.014132695,"about_ca_system_score_codex":0.00035325554,"about_ca_system_score_gemma":0.0002793755,"threshold_uncertainty_score":0.028100908},"labels":[],"label_agreement":null},{"id":"W2047059509","doi":"10.1128/jcm.01004-06","title":"Differences between Tissue-Associated Intestinal Microfloras of Patients with Crohn's Disease and Ulcerative Colitis","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":555,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dalhousie University","funders":"Canadian Institutes of Health Research; Killam Trusts; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Ulcerative colitis; Inflammatory bowel disease; Bacteroidetes; Crohn's disease; Biology; Colitis; Disease; Gut flora; Gastroenterology; Immunology; Microbiology; Bacteria; 16S ribosomal RNA; Medicine; Pathology; Genetics","score_opus":0.01904497474622935,"score_gpt":0.3173003949099136,"score_spread":0.2982554201636842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047059509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99913627,0.00039091244,0.00005876173,0.000016360798,0.0000053179297,0.0000047605463,0.00006985113,0.000002600968,0.00031518782],"genre_scores_gemma":[0.99946696,0.00013389594,0.00012003053,0.000022550657,0.000008469992,0.0000058133123,0.0001424691,0.0000018648311,0.00009793224],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996345,0.00007749079,0.000060492617,0.00010224639,0.000056472498,0.00006872024],"domain_scores_gemma":[0.99924445,0.00021807483,0.00023039663,0.00003850982,0.000065102235,0.00020344419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024740925,0.00027848195,0.0004911674,0.0008340501,0.00028761866,0.00044834745,0.00010690387,0.0004737082,0.0016969548],"category_scores_gemma":[0.0015609976,0.00015194158,0.00020511952,0.00047245526,0.0002951276,0.00032395832,0.0003473064,0.0002863191,0.00027801984],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013003019,0.000079919955,0.9771328,0.000056929417,0.00006621491,0.00053117925,0.00026470915,0.000026180001,0.015117321,0.000028888226,0.000056796503,0.005338752],"study_design_scores_gemma":[0.00000895147,0.00031368274,0.99783343,0.00000521522,0.000020010904,0.0011500713,0.00018372049,0.000030263807,0.00030761468,0.000025623982,0.000118625314,0.0000027508001],"about_ca_topic_score_codex":0.00040130215,"about_ca_topic_score_gemma":0.00048628668,"teacher_disagreement_score":0.0016969548,"about_ca_system_score_codex":0.00012314081,"about_ca_system_score_gemma":0.00009336488,"threshold_uncertainty_score":0.0056768656},"labels":[],"label_agreement":null},{"id":"W2047073151","doi":"10.1128/jcm.02411-06","title":"Factors Influencing Broth Microdilution Antimicrobial Susceptibility Test Results for Dalbavancin, a New Glycopeptide Agent","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"Pfizer","keywords":"Dalbavancin; Broth microdilution; Glycopeptide; Microbiology; Antimicrobial; Teicoplanin; Biology; Medicine; Vancomycin; Minimum inhibitory concentration; Antibiotics; Bacteria; Staphylococcus aureus","score_opus":0.08154852280987293,"score_gpt":0.3966265446794159,"score_spread":0.3150780218695429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047073151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700973,0.005239644,0.019310324,0.0005394722,0.00019574087,0.00058996386,0.00057116506,0.00024513292,0.003211217],"genre_scores_gemma":[0.9734953,0.0017299285,0.022245318,0.0002977259,0.00006676844,0.00022160355,0.0008396347,0.000085756416,0.0010179715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98966545,0.0040229033,0.0012886334,0.00074430526,0.0039199768,0.00035869342],"domain_scores_gemma":[0.98499006,0.010460503,0.00188846,0.00059484236,0.0017361715,0.0003299833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004554105,0.0008585267,0.00078138616,0.0012201599,0.00032685805,0.0014525142,0.0004579978,0.0006904786,0.0009931055],"category_scores_gemma":[0.01721327,0.00039116057,0.00035851914,0.00086992636,0.00069879985,0.00040580583,0.0004072407,0.000574698,0.0007314462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011281082,0.00031919035,0.04261658,0.00023711142,0.00006642592,0.00030189712,0.0003117642,0.00032987434,0.9422841,0.000103215825,0.0002289548,0.012072851],"study_design_scores_gemma":[0.00003405782,0.0025854066,0.06304604,0.000039626175,0.00012371087,0.0014193881,0.00023337822,0.0018040977,0.92851114,0.000120257406,0.0020385196,0.000044321478],"about_ca_topic_score_codex":0.0009401552,"about_ca_topic_score_gemma":0.0013337733,"teacher_disagreement_score":0.004554105,"about_ca_system_score_codex":0.00036785405,"about_ca_system_score_gemma":0.00048692126,"threshold_uncertainty_score":0.024084687},"labels":[],"label_agreement":null},{"id":"W2048253923","doi":"10.1128/jcm.06689-11","title":"Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; School of Medicine, Stanford University; International AIDS Society","keywords":"Concordance; Genotyping; Drug resistance; Sequence analysis; Sequence (biology); Computational biology; Computer science; Bioinformatics; Medicine; Biology; Genetics; Genotype; Gene","score_opus":0.059500399311311854,"score_gpt":0.38382416077184683,"score_spread":0.324323761460535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048253923","genre_codex":"methods","genre_gemma":"software","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"software","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10308243,0.0006278908,0.70019746,0.000268805,0.00012883538,0.0008503159,0.008527477,0.1824866,0.0038302536],"genre_scores_gemma":[0.17329516,0.00031427213,0.79622024,0.00055274635,0.00011521075,0.0011193915,0.01738899,0.0072888494,0.0037051516],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9956006,0.0008491023,0.0004193853,0.0013743367,0.0014952768,0.00026122632],"domain_scores_gemma":[0.99399227,0.0024732088,0.0006057311,0.0014939507,0.001263859,0.00017099024],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006010147,0.0016699417,0.00126906,0.002705641,0.00065427896,0.0016359789,0.0018849472,0.0008638379,0.006273983],"category_scores_gemma":[0.0137670245,0.000983902,0.0011192061,0.0011039942,0.0005551065,0.0011466072,0.0022569075,0.0010439741,0.0048311795],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019030537,0.00048336186,0.027760189,0.0008660905,0.00046357175,0.0005426483,0.0013777198,0.013076697,0.2801168,0.0026633386,0.06355866,0.6071879],"study_design_scores_gemma":[0.0007517162,0.0013143907,0.06674349,0.0004600731,0.00044587688,0.002562543,0.0003879842,0.32773292,0.44167507,0.0076778843,0.14946803,0.00078003184],"about_ca_topic_score_codex":0.0037489524,"about_ca_topic_score_gemma":0.0043400303,"teacher_disagreement_score":0.006273983,"about_ca_system_score_codex":0.0005245296,"about_ca_system_score_gemma":0.0018042447,"threshold_uncertainty_score":0.03178507},"labels":[],"label_agreement":null},{"id":"W2049083959","doi":"10.1128/jcm.02923-13","title":"Ease and Comfort of Cervical and Vaginal Sampling for Chlamydia trachomatis and Trichomonas vaginalis with a New Aptima Specimen Collection and Transportation Kit","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Juravinski Hospital","funders":"Hologic","keywords":"Trichomonas vaginalis; Chlamydia trachomatis; Trichomonas Vaginitis; Gynecology; Trichomonas; Biology; Trichomoniasis; Medicine","score_opus":0.052011588243238156,"score_gpt":0.35867717589090053,"score_spread":0.3066655876476624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049083959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9843238,0.0007230985,0.0028519027,0.0005980268,0.00009337065,0.00016100371,0.00048289896,0.000068514666,0.010697309],"genre_scores_gemma":[0.99345785,0.00034063146,0.0037916622,0.00021653053,0.00005616618,0.00005494039,0.00016541741,0.00001338851,0.0019033556],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971879,0.0010798661,0.00035429178,0.0001800429,0.0009794249,0.00021851777],"domain_scores_gemma":[0.98909307,0.0056403247,0.0021327094,0.00084595184,0.0015452256,0.00074268185],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037347018,0.00021423044,0.000344112,0.0005401138,0.0004355197,0.0006794559,0.00031376418,0.00040352982,0.006406188],"category_scores_gemma":[0.0149532305,0.0002510611,0.00051211583,0.0003036741,0.0004009704,0.0005599169,0.0007978814,0.0003749761,0.00076125254],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055868045,0.00029581966,0.8964444,0.00031133246,0.00012885206,0.0007008455,0.004405494,0.00027875314,0.008526399,0.0001704751,0.0029378,0.08524119],"study_design_scores_gemma":[0.000027396127,0.0010215598,0.98152655,0.00009165896,0.00006658323,0.0035885593,0.004005036,0.00081077736,0.0020915866,0.00014921738,0.0065553267,0.00006577928],"about_ca_topic_score_codex":0.0026112152,"about_ca_topic_score_gemma":0.0029888307,"teacher_disagreement_score":0.006406188,"about_ca_system_score_codex":0.000256003,"about_ca_system_score_gemma":0.00040043448,"threshold_uncertainty_score":0.02143085},"labels":[],"label_agreement":null},{"id":"W2049269975","doi":"10.1128/jcm.06004-11","title":"Routine Confirmation of Positive Nucleic Acid Amplification Test Results for Neisseria gonorrhoeae Is Not Necessary","year":2011,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Neisseria gonorrhoeae; Nucleic Acid Amplification Tests; Nucleic acid; Neisseriaceae; Microbiology; Biology; Virology; Genetics; Antibiotics; Chlamydia trachomatis","score_opus":0.09209232993219024,"score_gpt":0.38543058054990165,"score_spread":0.2933382506177114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049269975","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0016116247,0.0011631474,0.00048956834,0.9748863,0.014388632,0.000016748914,0.00004267158,0.000072536706,0.007328708],"genre_scores_gemma":[0.020278852,0.0018683267,0.0011223722,0.93589705,0.031467084,0.000023753437,0.00005533067,0.000041577252,0.009245613],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969164,0.0008415975,0.0005179722,0.00045570452,0.00082495005,0.00044324523],"domain_scores_gemma":[0.99107647,0.004155854,0.00094368117,0.0005473386,0.002087617,0.0011891174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023530605,0.00069082883,0.0010939826,0.0006224719,0.0020610157,0.0017716595,0.0015177499,0.027399536,0.010310894],"category_scores_gemma":[0.025697298,0.00068901735,0.0009839254,0.0006278705,0.0036033103,0.0043832688,0.0009931674,0.026598707,0.013079762],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007654293,0.00010503146,0.0046603363,0.00015044617,0.000018564508,0.025531309,0.00040026804,0.000120828,0.0010652386,0.0025314153,0.9403027,0.025037203],"study_design_scores_gemma":[0.00014809302,0.0004297794,0.009792698,0.0013548803,0.000049738865,0.091345556,0.001940001,0.0010153712,0.001332672,0.020112818,0.8723178,0.00016066272],"about_ca_topic_score_codex":0.0034636932,"about_ca_topic_score_gemma":0.0065257004,"teacher_disagreement_score":0.027399536,"about_ca_system_score_codex":0.0022048287,"about_ca_system_score_gemma":0.001529289,"threshold_uncertainty_score":0.034493387},"labels":[],"label_agreement":null},{"id":"W2049745837","doi":"10.1128/jcm.00640-08","title":"European Emergence of Ciprofloxacin-Resistant <i>Escherichia coli</i> Clonal Groups O25:H4-ST 131 and O15:K52:H1 Causing Community-Acquired Uncomplicated Cystitis","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Università degli Studi di Genova; Calgary Laboratory Services; University of Minnesota; U.S. Department of Veterans Affairs","keywords":"Multilocus sequence typing; Ciprofloxacin; Microbiology; Biology; Tetracycline; RAPD; Pulsed-field gel electrophoresis; Serotype; Ampicillin; Antibiotic resistance; Typing; Antibiotics; Genotype; Genetics; Gene; Medicine; Population; Genetic diversity","score_opus":0.0858894425080357,"score_gpt":0.3480799029099581,"score_spread":0.2621904604019224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049745837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99933726,0.0002064184,0.000089067005,0.000013500497,0.0000021200094,0.000009493669,0.000079768826,0.000004581693,0.00025782053],"genre_scores_gemma":[0.9991716,0.00014760853,0.0002513376,0.000056040684,0.000005542512,0.000003286267,0.00023944475,0.000002466971,0.00012265453],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994722,0.000113438124,0.000059075403,0.00015663257,0.000080476966,0.00011819774],"domain_scores_gemma":[0.9985359,0.00020970654,0.00064063317,0.0000836352,0.0002332228,0.00029699446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054758054,0.00027503594,0.00029558403,0.00061305397,0.00026102227,0.0006461463,0.0003132271,0.000499037,0.00081067847],"category_scores_gemma":[0.0013983806,0.00021986637,0.00018546291,0.0005657293,0.00043612003,0.00028980145,0.00029994446,0.00023707155,0.00017401174],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030585198,0.000040706163,0.9785282,0.00003671696,0.00004024221,0.0010585986,0.0002543534,0.00008064711,0.008336881,0.000024484416,0.00021481176,0.011078615],"study_design_scores_gemma":[0.000014257548,0.00027744577,0.9948218,0.00001655178,0.000019362455,0.0027729142,0.00030953763,0.00012976467,0.0008673993,0.000009890845,0.0007552691,0.0000057521875],"about_ca_topic_score_codex":0.0049634883,"about_ca_topic_score_gemma":0.0045191185,"teacher_disagreement_score":0.0049634883,"about_ca_system_score_codex":0.00038699916,"about_ca_system_score_gemma":0.0002448418,"threshold_uncertainty_score":0.009869218},"labels":[],"label_agreement":null},{"id":"W2050053236","doi":"10.1128/jcm.39.9.3260-3266.2001","title":"Variation in Restriction Fragment Length Polymorphisms among Serial Isolates from Patients with <i>Trichophyton rubrum</i> Infection","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's College Hospital; Hospital for Sick Children; Ministry of Health and Long Term Care; SickKids Foundation; University of Toronto; Sunnybrook Hospital; Sunnybrook Health Science Centre","funders":"University of Toronto","keywords":"Restriction fragment length polymorphism; Genotype; Trichophyton rubrum; Biology; Genotyping; Trichophyton tonsurans; Ribosomal DNA; Genetic variation; Restriction fragment; Microbiology; Genetics; DNA; Antifungal; Gene; Phylogenetics","score_opus":0.014096683697475656,"score_gpt":0.2903868044988929,"score_spread":0.2762901208014173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050053236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996666,0.000080358004,0.00008277999,0.000011655177,0.0000022195409,0.0000029624105,0.000039827813,0.0000036707709,0.00010992052],"genre_scores_gemma":[0.99960667,0.00004203296,0.00014187531,0.000017168362,0.000004975874,0.000004213701,0.00011921252,0.0000025036018,0.00006138448],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99953544,0.00009102642,0.00006915343,0.00014357908,0.00007674966,0.00008418632],"domain_scores_gemma":[0.99899143,0.00030593714,0.00039649833,0.00005447783,0.000112714915,0.00013909863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025473573,0.0003371366,0.00035821888,0.00061676017,0.00024411432,0.0005351286,0.0001702361,0.0004372252,0.00052770047],"category_scores_gemma":[0.0019083676,0.00021626159,0.00026626937,0.00038954595,0.00021275993,0.00019175775,0.00013253823,0.00037748172,0.00024043806],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005306477,0.00010602999,0.91447526,0.00004001024,0.00007859351,0.0016307039,0.00077411754,0.00020104114,0.07422005,0.000027904387,0.00016567408,0.0077499216],"study_design_scores_gemma":[0.000018431194,0.0004766941,0.9866671,0.000010202901,0.000046502108,0.0062067,0.00032650854,0.0002933566,0.0054902826,0.000019823065,0.00043176097,0.000012630106],"about_ca_topic_score_codex":0.0010831512,"about_ca_topic_score_gemma":0.0008331672,"teacher_disagreement_score":0.0010831512,"about_ca_system_score_codex":0.00022300008,"about_ca_system_score_gemma":0.000081436425,"threshold_uncertainty_score":0.002153635},"labels":[],"label_agreement":null},{"id":"W2050168569","doi":"10.1128/jcm.40.12.4771-4775.2002","title":"Are There Naturally Occurring Pleomorphic Bacteria in the Blood of Healthy Humans?","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université du Québec à Trois-Rivières; Biotechnology Research Institute; McGill University","funders":"","keywords":"Bacteria; Biology; Microbiology; 16S ribosomal RNA; Flow cytometry; Fluorescence in situ hybridization; Antibiotics; Microorganism; Ribosomal RNA; In situ hybridization; Gene; Molecular biology; Genetics; Chromosome","score_opus":0.07444301938097961,"score_gpt":0.3364167491966898,"score_spread":0.2619737298157102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050168569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267477,0.0051846844,0.0006698104,0.00039494887,0.000028594017,0.00001348899,0.000109845736,0.000015605996,0.000908278],"genre_scores_gemma":[0.9967519,0.0020161907,0.00059912854,0.00022835335,0.00010789982,0.000008741773,0.0000913095,0.000003869801,0.00019260755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996635,0.00008232516,0.00003465878,0.000096334734,0.000071328956,0.000051835043],"domain_scores_gemma":[0.99915874,0.00022979846,0.00032986622,0.000056537425,0.00010619325,0.00011884757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030199837,0.00026111014,0.00043267253,0.00061774475,0.0002878993,0.0006320604,0.0002167903,0.0010138752,0.0012828313],"category_scores_gemma":[0.0023208682,0.0003016292,0.00013284266,0.00041167715,0.0005492695,0.000708287,0.00018188731,0.00026370128,0.00048933184],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012452478,0.00020307222,0.8850242,0.00030077802,0.00006622408,0.0068147103,0.0008717373,0.00006427281,0.055880707,0.00018753692,0.00067527033,0.048666228],"study_design_scores_gemma":[0.000035349905,0.0014415804,0.945468,0.00009765143,0.000098125376,0.04202079,0.0024487183,0.00028509056,0.005165824,0.00074038666,0.0021694866,0.00002897368],"about_ca_topic_score_codex":0.00043804848,"about_ca_topic_score_gemma":0.00047982065,"teacher_disagreement_score":0.0012828313,"about_ca_system_score_codex":0.000093311115,"about_ca_system_score_gemma":0.000099008736,"threshold_uncertainty_score":0.0042915344},"labels":[],"label_agreement":null},{"id":"W2050291503","doi":"10.1128/jcm.43.6.2830-2836.2005","title":"Molecular Epidemiology of Community- and Health Care-Associated Methicillin-Resistant <i>Staphylococcus aureus</i> in Manitoba, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Pulsed-field gel electrophoresis; Staphylococcus aureus; Epidemiology; Methicillin-resistant Staphylococcus aureus; Molecular epidemiology; Staphylococcal infections; Microbiology; Antibiotics; Medicine; Micrococcaceae; Biology; Antibacterial agent; Bacteria; Internal medicine; Genetics","score_opus":0.08170137218650822,"score_gpt":0.3917985223915711,"score_spread":0.3100971502050629,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050291503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98731196,0.005407665,0.0004739155,0.0010106398,0.000041180207,0.00018421188,0.0022192188,0.000036969675,0.003314268],"genre_scores_gemma":[0.9947713,0.0022180316,0.0008369706,0.00035346317,0.0000135032415,0.000033692988,0.00074146566,0.000008419046,0.0010231464],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985613,0.00014867283,0.00012186811,0.00020296415,0.0005802603,0.00038485756],"domain_scores_gemma":[0.9967624,0.00015811043,0.0006064901,0.00005532864,0.0015709494,0.0008466808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00080586434,0.00047988968,0.00034742264,0.0043263785,0.0021643538,0.0014379128,0.0015805907,0.00048345717,0.0015819082],"category_scores_gemma":[0.0020362409,0.0005122615,0.00042523874,0.00509503,0.0011033603,0.00031068097,0.00070824986,0.0006502901,0.00017236207],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000842882,0.00004434244,0.9870996,0.00009497016,0.000059472255,0.00029073562,0.0010662046,0.00021903077,0.00230453,0.00020867202,0.00092190824,0.0076061967],"study_design_scores_gemma":[0.000009192882,0.000056228706,0.99608636,0.00006971398,0.000022116963,0.0002537567,0.0015863061,0.00025868512,0.00017919517,0.000019319477,0.0014440906,0.000014966384],"about_ca_topic_score_codex":0.9932794,"about_ca_topic_score_gemma":0.99507767,"teacher_disagreement_score":0.028816998,"about_ca_system_score_codex":0.028816998,"about_ca_system_score_gemma":0.03940747,"threshold_uncertainty_score":0.20908296},"labels":[],"label_agreement":null},{"id":"W2051336715","doi":"10.1128/jcm.43.12.6215-6216.2005","title":"5-Fluorouracil Altered Morphology and Inhibited Growth of <i>Candida albicans</i>","year":2005,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; International Centre for Infectious Diseases","funders":"Lady Tata Memorial Trust","keywords":"Candida albicans; Biology; Microbiology; Human immunodeficiency virus (HIV); Cancer; Virology; Mycosis; Immunology; Genetics","score_opus":0.04116858221061787,"score_gpt":0.34953067699761026,"score_spread":0.3083620947869924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051336715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86899865,0.011998643,0.0023801408,0.023454119,0.00357156,0.00011349592,0.000709698,0.00030281054,0.08847082],"genre_scores_gemma":[0.9819983,0.0028973587,0.0008669372,0.0041653602,0.00083019945,0.000020119904,0.00019912855,0.0000215923,0.009000852],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99986815,0.00003694766,0.00001140436,0.000019131612,0.000026899586,0.00003736626],"domain_scores_gemma":[0.999824,0.0000929453,0.00002024705,0.000023959252,0.00002232526,0.00001663515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009888712,0.00028529047,0.00031649033,0.00020028102,0.00031134635,0.00047736624,0.00022728098,0.0017817451,0.0039657154],"category_scores_gemma":[0.0004709566,0.000099039906,0.00020263752,0.00014356633,0.00025391832,0.00018462764,0.000090527894,0.0012415821,0.0010963561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033684238,0.00050414616,0.011202633,0.00048556,0.000037449117,0.1495708,0.0004959038,0.0004916192,0.701271,0.003965912,0.03804377,0.09056277],"study_design_scores_gemma":[0.0003745311,0.005145211,0.06900164,0.00011152227,0.00014661445,0.32330388,0.000553919,0.0030951288,0.39589116,0.0019058952,0.20038132,0.00008916006],"about_ca_topic_score_codex":0.0015909804,"about_ca_topic_score_gemma":0.0016577045,"teacher_disagreement_score":0.0039657154,"about_ca_system_score_codex":0.0005499762,"about_ca_system_score_gemma":0.0001290919,"threshold_uncertainty_score":0.013266623},"labels":[],"label_agreement":null},{"id":"W2054423671","doi":"10.1128/jcm.42.11.5029-5035.2004","title":"Molecular Characteristics of Strains of the Cameroon Family, the Major Group of <i>Mycobacterium tuberculosis</i> in a Country with a High Prevalence of Tuberculosis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie","keywords":"Restriction fragment length polymorphism; Mycobacterium tuberculosis; Tuberculosis; Typing; Biology; Tandem repeat; Genetics; Variable number tandem repeat; Molecular epidemiology; Virology; Genotype; Medicine; Gene; Genome","score_opus":0.020533948318989834,"score_gpt":0.3219404849538744,"score_spread":0.30140653663488454,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054423671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993569,0.00016346903,0.00013588723,0.000013879901,0.0000054645952,0.000007858413,0.0001524734,0.0000020931227,0.00016193725],"genre_scores_gemma":[0.9987206,0.00012601973,0.0006067976,0.000021634301,0.0000079013535,0.000010394833,0.00038503992,0.0000024259637,0.00011918821],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976367,0.000052169755,0.00002642423,0.00006796385,0.000031404456,0.000058318576],"domain_scores_gemma":[0.9995509,0.000103715916,0.00018077495,0.000023419698,0.00005998285,0.000081217804],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024342077,0.0004959549,0.00017034374,0.0008959425,0.00024598482,0.00032488065,0.00013532296,0.00029507861,0.00093510153],"category_scores_gemma":[0.0008450422,0.0001254291,0.00012317755,0.00046416107,0.00025870153,0.00017800038,0.00011765582,0.00023246619,0.00017160835],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081225333,0.00019623828,0.6219303,0.000081161656,0.000043185726,0.0013452345,0.0006629981,0.000278334,0.36202973,0.00012801915,0.00022725917,0.012265304],"study_design_scores_gemma":[0.000022831351,0.00057289045,0.97093475,0.000024869401,0.000036825255,0.0036692938,0.0006010406,0.0006060349,0.022237571,0.00003724456,0.0012439274,0.000012755897],"about_ca_topic_score_codex":0.0022784935,"about_ca_topic_score_gemma":0.0014182626,"teacher_disagreement_score":0.0022784935,"about_ca_system_score_codex":0.0001549871,"about_ca_system_score_gemma":0.00008604478,"threshold_uncertainty_score":0.0045304894},"labels":[],"label_agreement":null},{"id":"W2056400399","doi":"10.1128/jcm.01444-13","title":"Correlation between Clostridium difficile Bacterial Load, Commercial Real-Time PCR Cycle Thresholds, and Results of Diagnostic Tests Based on Enzyme Immunoassay and Cell Culture Cytotoxicity Assay","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Institut universitaire de cardiologie et de pneumologie de Québec, Université Laval","keywords":"Immunoassay; Feces; Clostridium difficile toxin B; Biology; Microbiology; Clostridium difficile; Glutamate dehydrogenase; Immunology; Clostridium difficile toxin A; Antibiotics; Antibody; Biochemistry","score_opus":0.026742668069075638,"score_gpt":0.3201955068855565,"score_spread":0.2934528388164808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056400399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98822194,0.002339982,0.00747382,0.000091764654,0.000057004658,0.000054213844,0.00051038957,0.0001270952,0.0011237009],"genre_scores_gemma":[0.9906165,0.0003133062,0.0073349182,0.00009565738,0.00003222895,0.00010459302,0.00092490576,0.000025164283,0.00055263046],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99371946,0.0017842165,0.0008823714,0.0010863419,0.0020546138,0.0004729365],"domain_scores_gemma":[0.98023605,0.012465082,0.0034548738,0.00086215814,0.0024926253,0.00048928946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004565817,0.00064750254,0.00060750765,0.0017336394,0.00020409666,0.0011669135,0.00050940405,0.00083503895,0.0012245418],"category_scores_gemma":[0.018120768,0.00042276652,0.00027940425,0.0015691716,0.00056060735,0.00063143024,0.00044140418,0.00083780335,0.000715677],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013352038,0.00017507,0.9322342,0.00016967393,0.00017995982,0.000162135,0.00025399227,0.00084234466,0.051516958,0.00009308047,0.00028239333,0.012754938],"study_design_scores_gemma":[0.00005996945,0.0011968878,0.9337117,0.00006129769,0.0001782607,0.0019700776,0.0004812235,0.010388707,0.049777675,0.00045351643,0.001654397,0.00006633767],"about_ca_topic_score_codex":0.0006544905,"about_ca_topic_score_gemma":0.0006312925,"teacher_disagreement_score":0.004565817,"about_ca_system_score_codex":0.00051256386,"about_ca_system_score_gemma":0.0003268132,"threshold_uncertainty_score":0.024146676},"labels":[],"label_agreement":null},{"id":"W2056405478","doi":"10.1128/jcm.02117-12","title":"Laboratory Detection of Enterobacteriaceae That Produce Carbapenemases","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":359,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Enterobacteriaceae; Enterobacteriaceae Infections; Microbiology; Biology; Medicine; Escherichia coli; Genetics; Gene","score_opus":0.028071222314530377,"score_gpt":0.32802208917404135,"score_spread":0.299950866859511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056405478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977738,0.00032998028,0.00086077634,0.000015109249,0.000011190344,0.00010474124,0.00018470558,0.00002253082,0.0006971238],"genre_scores_gemma":[0.9953591,0.00029638124,0.003027233,0.00009122905,0.000023299031,0.00011718065,0.00065619306,0.000008214131,0.0004212507],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974643,0.0008279349,0.00026664112,0.0005513195,0.0006643191,0.00022549569],"domain_scores_gemma":[0.99679154,0.0010766584,0.00074310263,0.00021685057,0.00084706256,0.00032463315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017445666,0.0009619811,0.00075444195,0.001131017,0.0002782418,0.0006842881,0.00035904406,0.00044460114,0.00069982087],"category_scores_gemma":[0.0037818842,0.00041307762,0.0003215748,0.0007963212,0.0005133548,0.00060223526,0.00031063004,0.00037065893,0.00028959234],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008981265,0.0011461426,0.946018,0.00018142187,0.00008774051,0.000400915,0.00032353975,0.00019142297,0.03914401,0.000028038738,0.0001026779,0.011478042],"study_design_scores_gemma":[0.00016548038,0.012555004,0.93569046,0.00005746534,0.0001426035,0.0033299618,0.00065347477,0.0012302607,0.04458888,0.000057252553,0.0014987944,0.000030318375],"about_ca_topic_score_codex":0.001111915,"about_ca_topic_score_gemma":0.0009527448,"teacher_disagreement_score":0.0017445666,"about_ca_system_score_codex":0.00033501204,"about_ca_system_score_gemma":0.00043640676,"threshold_uncertainty_score":0.009226263},"labels":[],"label_agreement":null},{"id":"W2056682582","doi":"10.1128/jcm.01849-08","title":"<i>Ureaplasma parvum</i> as a Cause of Sternal Wound Infection","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Urological Disorders and Treatments","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"","keywords":"Microbiology; Wound infection; Ureaplasma; Biology; Medicine; Virology; Surgery; Mycoplasma","score_opus":0.061645243179244504,"score_gpt":0.4092765419280822,"score_spread":0.3476312987488377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056682582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95443887,0.017048113,0.0016782605,0.0062586726,0.0009269145,0.000041685682,0.00015505016,0.00022939942,0.019222975],"genre_scores_gemma":[0.9956286,0.0013904229,0.00040469464,0.0008423655,0.0009330501,0.0000052000946,0.00005850062,0.000014717485,0.0007224134],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995741,0.00007737807,0.00006952629,0.00006149088,0.000082211416,0.00013526286],"domain_scores_gemma":[0.99907887,0.00027021213,0.00031255695,0.000058013018,0.0000911562,0.00018929786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026153546,0.0006517172,0.0004784281,0.0013337446,0.0011010362,0.00074972364,0.0009044058,0.0027123955,0.0023872638],"category_scores_gemma":[0.00194838,0.00026608564,0.00039825845,0.00078853336,0.0012011474,0.0008968449,0.0006197601,0.0012403139,0.00093652325],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009226849,0.000037978883,0.032584015,0.000094484865,0.000013225267,0.9572801,0.0001951116,0.00009659258,0.00296079,0.00044391293,0.002190521,0.0040110867],"study_design_scores_gemma":[0.000010461699,0.00006452169,0.015316409,0.000041159303,0.000022177896,0.98028153,0.0001880336,0.00024218873,0.0013884485,0.00035398258,0.0020752754,0.000015880723],"about_ca_topic_score_codex":0.0016607092,"about_ca_topic_score_gemma":0.0009856087,"teacher_disagreement_score":0.0027123955,"about_ca_system_score_codex":0.0004458138,"about_ca_system_score_gemma":0.00033502866,"threshold_uncertainty_score":0.007986188},"labels":[],"label_agreement":null},{"id":"W2056870663","doi":"10.1128/jcm.02003-10","title":"Identification of Variable-Number Tandem-Repeat (VNTR) Sequences in Acinetobacter baumannii and Interlaboratory Validation of an Optimized Multiple-Locus VNTR Analysis Typing Scheme","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institutes of Health; Centre National de la Recherche Scientifique","keywords":"Multiple Loci VNTR Analysis; Variable number tandem repeat; Biology; Typing; Genotyping; Acinetobacter baumannii; DNA profiling; Genetics; Tandem repeat; Computational biology; Genotype; Genome; DNA; Gene","score_opus":0.015279608654618693,"score_gpt":0.3355607234424905,"score_spread":0.3202811147878718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056870663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980441,0.00027981988,0.018413568,0.000029325585,0.000016938906,0.00016019649,0.0002965309,0.0000926432,0.00026999472],"genre_scores_gemma":[0.9172285,0.000224663,0.080061406,0.00005476749,0.000014246938,0.0002929247,0.0017722901,0.000031604082,0.00031951017],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99388945,0.0020761194,0.00061607675,0.0017784234,0.0012669369,0.00037302639],"domain_scores_gemma":[0.9978593,0.00070939213,0.0004252064,0.00039506043,0.00047526762,0.00013580397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030977554,0.0006505592,0.0006273151,0.0012514174,0.00029199047,0.00060643314,0.0005312977,0.00063499087,0.00019362239],"category_scores_gemma":[0.0048043756,0.00031089134,0.0005447551,0.0008652441,0.00042830623,0.00025776177,0.0006265085,0.00043790304,0.00022118955],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057551585,0.00035318034,0.021875244,0.000068691654,0.00005461446,0.00008584574,0.00020611045,0.0016150548,0.96197903,0.000064355605,0.00004873291,0.013073577],"study_design_scores_gemma":[0.00009544489,0.0046939296,0.13242887,0.00005326081,0.00031146663,0.0013637479,0.00029558936,0.022590848,0.83600587,0.00018432908,0.0018806729,0.00009605295],"about_ca_topic_score_codex":0.0010152125,"about_ca_topic_score_gemma":0.0014007937,"teacher_disagreement_score":0.0030977554,"about_ca_system_score_codex":0.00033571545,"about_ca_system_score_gemma":0.0005196849,"threshold_uncertainty_score":0.016382694},"labels":[],"label_agreement":null},{"id":"W2057013257","doi":"10.1128/jcm.40.11.3894-3902.2002","title":"Comparison of<i>Staphylococcus aureus</i>Isolates from Bovine and Human Skin, Milking Equipment, and Bovine Milk by Phage Typing, Pulsed-Field Gel Electrophoresis, and Binary Typing","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Typing; Milking; Staphylococcus aureus; Phage typing; Microbiology; Micrococcaceae; Biology; Bovine milk; Pulsed-field gel electrophoresis; Staphylococcus; Gel electrophoresis; Virology; Bacteria; Genetics; Food science; Genotype","score_opus":0.03536549198112827,"score_gpt":0.3589128143775843,"score_spread":0.32354732239645606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057013257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992526,0.0002803967,0.00018415436,0.0000085160955,0.000002255807,0.000005503661,0.00009656882,0.0000024711574,0.0001675103],"genre_scores_gemma":[0.9984163,0.00018189159,0.00064524467,0.000025063735,0.000007497167,0.000009733815,0.00057699473,0.0000027506146,0.00013452889],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99944466,0.000116649826,0.000073284275,0.00012623274,0.0001596465,0.000079572776],"domain_scores_gemma":[0.9993284,0.00020661703,0.0002025753,0.00005027459,0.0001256978,0.000086507986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033119874,0.00024194522,0.00023406773,0.0008463721,0.00019430002,0.0004638685,0.00010254686,0.00026798467,0.00038089865],"category_scores_gemma":[0.0012037072,0.00017084232,0.00018766908,0.00047969853,0.00019214505,0.0001721441,0.0002189793,0.00012742946,0.00015052505],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009032084,0.00011706005,0.7939164,0.0002073211,0.00010227311,0.0004547754,0.0009894106,0.00018444218,0.17803036,0.000046814217,0.00022061748,0.024827376],"study_design_scores_gemma":[0.000012515379,0.00054805033,0.9851849,0.000029748511,0.00006550902,0.0020351922,0.00038341954,0.00038714675,0.010531742,0.00003472906,0.00077892066,0.000008099238],"about_ca_topic_score_codex":0.0023437222,"about_ca_topic_score_gemma":0.002017334,"teacher_disagreement_score":0.0023437222,"about_ca_system_score_codex":0.00014344181,"about_ca_system_score_gemma":0.00012730704,"threshold_uncertainty_score":0.0046601295},"labels":[],"label_agreement":null},{"id":"W2057745339","doi":"10.1128/jcm.03288-14","title":"Evaluation of Enzyme Immunoassays and Real-Time PCR for Detecting Shiga Toxin-Producing Escherichia coli in Southern Alberta, Canada","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Chinook Regional Hospital; Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Escherichia coli; Shiga toxin; Microbiology; Toxin; Shiga-like toxin; Biology; Enterobacteriaceae; Virology; Biochemistry","score_opus":0.05983649946884002,"score_gpt":0.36254728255449037,"score_spread":0.30271078308565036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057745339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9582656,0.0053885938,0.0137545485,0.0006495661,0.000114952156,0.0005957441,0.0016928607,0.00042086426,0.01911736],"genre_scores_gemma":[0.94249004,0.0029406783,0.03871236,0.00035835724,0.000028041954,0.00018890512,0.002489486,0.000060367576,0.012731728],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99419045,0.0005485602,0.00025744727,0.00051688333,0.004011808,0.00047495388],"domain_scores_gemma":[0.99398214,0.00064701325,0.00033582837,0.000093849296,0.004448957,0.00049219304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003496974,0.00095224974,0.0004226491,0.0029215699,0.0016277055,0.001812696,0.001511335,0.0005505516,0.0010145927],"category_scores_gemma":[0.0033898365,0.0007446851,0.00027720886,0.002774655,0.0013995996,0.00027140835,0.00063879136,0.00045204643,0.00036871072],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002311848,0.00075922284,0.60620505,0.0007648783,0.00024624588,0.0015684953,0.0042552813,0.005068786,0.2608232,0.001293353,0.0020336409,0.11467004],"study_design_scores_gemma":[0.00016870341,0.0009447047,0.8802276,0.00018570796,0.0002447311,0.0010746861,0.005370464,0.013579263,0.07514169,0.00018982819,0.02272756,0.00014490495],"about_ca_topic_score_codex":0.969269,"about_ca_topic_score_gemma":0.9843152,"teacher_disagreement_score":0.030731022,"about_ca_system_score_codex":0.018135794,"about_ca_system_score_gemma":0.029155156,"threshold_uncertainty_score":0.131585},"labels":[],"label_agreement":null},{"id":"W2058312898","doi":"10.1128/jcm.44.2.433-440.2006","title":"Sequencing of<i>hsp65</i>Distinguishes among Subsets of the<i>Mycobacterium avium</i>Complex","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal General Hospital","funders":"","keywords":"Biology; Paratuberculosis; Subspecies; Mycobacterium; Amplicon; Species complex; Mycobacterium avium subspecies paratuberculosis; Gene; Microbiology; Mycobacterium avium complex; Mycobacterium avium-intracellulare infection; Sequence analysis; Genetics; Polymerase chain reaction; Bacteria; Phylogenetic tree; Zoology","score_opus":0.06284573588363332,"score_gpt":0.3611441197042118,"score_spread":0.2982983838205785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058312898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910603,0.0004549081,0.006358501,0.00006202788,0.0000165392,0.000055673863,0.0008358909,0.00006931792,0.001086887],"genre_scores_gemma":[0.9874942,0.00040669498,0.007766368,0.0001823743,0.000019810243,0.00003754204,0.003234441,0.000044510263,0.0008141172],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99979204,0.000029654411,0.000023829625,0.000061459956,0.00003836172,0.000054671964],"domain_scores_gemma":[0.9994825,0.00009476933,0.00016988831,0.000061537576,0.00010828077,0.00008294253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001979355,0.00026497678,0.00021257254,0.0005269382,0.00021833427,0.00035065165,0.00013049961,0.00027380258,0.00051898323],"category_scores_gemma":[0.0007812719,0.00015197316,0.00040312592,0.00034453263,0.00019046036,0.00011134709,0.0002140918,0.00029940304,0.00040875576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000781087,0.000024175219,0.013170624,0.000056737892,0.000013061194,0.00014638931,0.00022760723,0.0000739682,0.98185974,0.000054606513,0.00007095166,0.0042240713],"study_design_scores_gemma":[0.000029299852,0.00089388445,0.57197756,0.000114764,0.00023414647,0.0032179502,0.0009750318,0.0023628725,0.41062072,0.00025460875,0.009290471,0.00002869382],"about_ca_topic_score_codex":0.0019693307,"about_ca_topic_score_gemma":0.002437733,"teacher_disagreement_score":0.0019693307,"about_ca_system_score_codex":0.0001628918,"about_ca_system_score_gemma":0.00017582788,"threshold_uncertainty_score":0.003915727},"labels":[],"label_agreement":null},{"id":"W2059774955","doi":"10.1128/jcm.01297-08","title":"Comparison of Automated Microarray Detection with Real-Time PCR Assays for Detection of Respiratory Viruses in Specimens Obtained from Children","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Virology; Multiplex; Biology; Respiratory tract infections; TaqMan; Human metapneumovirus; Human bocavirus; Multiplex polymerase chain reaction; Rhinovirus; Metapneumovirus; Virus; Coronavirus; Respiratory system; Real-time polymerase chain reaction; Polymerase chain reaction; Medicine; Coronavirus disease 2019 (COVID-19); Gene; Pathology; Bioinformatics; Genetics","score_opus":0.08978139079483866,"score_gpt":0.4492441793999303,"score_spread":0.3594627886050916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059774955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7225875,0.009249679,0.25358078,0.000840303,0.0013524657,0.00067596656,0.0024152412,0.0019208002,0.007377234],"genre_scores_gemma":[0.60248023,0.00358472,0.38187045,0.0009925514,0.00039933066,0.002164199,0.0034380867,0.00018597115,0.0048844777],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9852114,0.006154585,0.0008000339,0.002600547,0.0045801112,0.0006534315],"domain_scores_gemma":[0.9936419,0.003575901,0.0007494277,0.0005009683,0.0013820508,0.00014976537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0055194283,0.0013577162,0.0011127325,0.0021467071,0.00045993397,0.0018153285,0.0019222046,0.001853264,0.0016983586],"category_scores_gemma":[0.0067348103,0.0010212838,0.00090132304,0.0015101826,0.00063217874,0.0013690413,0.0009075392,0.00081126735,0.001015777],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003278308,0.00065212796,0.021159437,0.0009841187,0.0004124841,0.00014021917,0.00045651998,0.0060861143,0.8948971,0.0009820365,0.0012964056,0.069655195],"study_design_scores_gemma":[0.0002318338,0.005739767,0.085006304,0.00016376824,0.0005035064,0.0013350266,0.0004989503,0.09664212,0.7942688,0.0010926909,0.014149765,0.00036740446],"about_ca_topic_score_codex":0.00088157295,"about_ca_topic_score_gemma":0.0016933203,"teacher_disagreement_score":0.0055194283,"about_ca_system_score_codex":0.0013111407,"about_ca_system_score_gemma":0.00063598907,"threshold_uncertainty_score":0.029189885},"labels":[],"label_agreement":null},{"id":"W2059841448","doi":"10.1128/jcm.06185-11","title":"Sequence Typing Confirms that a Predominant Listeria monocytogenes Clone Caused Human Listeriosis Cases and Outbreaks in Canada from 1988 to 2010","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Food Inspection Agency; British Columbia Centre for Disease Control; Pennsylvania State University; U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Listeria monocytogenes; Biology; Typing; Serotype; Pulsed-field gel electrophoresis; Outbreak; Virulence; Listeria; clone (Java method); Microbiology; Virology; Population; Genotype; Locus (genetics); Genetics; Bacteria; Gene; Medicine","score_opus":0.21272293963215105,"score_gpt":0.4016702116033532,"score_spread":0.18894727197120215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059841448","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860254,0.00076459843,0.00056081277,0.00034829677,0.000021748669,0.000040926883,0.005087943,0.00003652969,0.0071137697],"genre_scores_gemma":[0.9916108,0.000782976,0.0009197881,0.00016506154,0.000009049323,0.000009241862,0.0029989288,0.000008509212,0.0034955312],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996959,0.000010671559,0.00001455057,0.000045622193,0.00014887923,0.00008446025],"domain_scores_gemma":[0.99899215,0.00002657836,0.00008772486,0.000024564888,0.00074541743,0.00012356062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018687216,0.00019078115,0.00017025997,0.0011329289,0.00096132467,0.0004227635,0.00029242368,0.00020526313,0.0013769633],"category_scores_gemma":[0.00074802083,0.00014051776,0.0001484616,0.0015821952,0.00027058285,0.00010246446,0.00021782544,0.0002872394,0.00025585343],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038029416,0.000043254182,0.9157,0.00011111714,0.00003616422,0.00085001,0.0018252655,0.00044843115,0.029754775,0.00034805038,0.0052798414,0.0452227],"study_design_scores_gemma":[0.0000048412194,0.00003861323,0.99215674,0.00003364227,0.000013933905,0.0004721754,0.00073713553,0.00019575373,0.0017969268,0.00002135991,0.0045238044,0.000005164733],"about_ca_topic_score_codex":0.95872116,"about_ca_topic_score_gemma":0.9707831,"teacher_disagreement_score":0.04127884,"about_ca_system_score_codex":0.0054746023,"about_ca_system_score_gemma":0.007740975,"threshold_uncertainty_score":0.08304381},"labels":[],"label_agreement":null},{"id":"W2061086734","doi":"10.1128/jcm.01391-13","title":"Stability of Cervical Specimens in SurePath Medium for Human Papillomavirus Testing with the Roche cobas 4800 Assay","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Memorial University of Newfoundland","funders":"","keywords":"Colposcopy; Human papillomavirus; Roche Diagnostics; Medicine; Virology; Hybrid capture; Population; Internal medicine; Cervical intraepithelial neoplasia; Cervical cancer","score_opus":0.16217910522169335,"score_gpt":0.4342284448932728,"score_spread":0.2720493396715794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061086734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79891926,0.0062726415,0.15636592,0.00084029004,0.00069899246,0.002814794,0.0057955557,0.0034141806,0.024878444],"genre_scores_gemma":[0.69903314,0.0064832,0.24192329,0.00091840123,0.000314658,0.0052551897,0.020009276,0.0016022006,0.024460671],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99091727,0.0021990212,0.0009769797,0.001950609,0.0035068248,0.0004493211],"domain_scores_gemma":[0.9927033,0.0013408294,0.0006513874,0.0010090522,0.0040488536,0.00024661],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006340661,0.0013914972,0.0010917931,0.002391483,0.0014539271,0.0016662714,0.0013749951,0.0011565544,0.008776723],"category_scores_gemma":[0.011527286,0.001051138,0.0008960535,0.0019504377,0.0009979483,0.0012477564,0.0012592186,0.0013409364,0.0053168256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017124056,0.0002781967,0.03421603,0.00037022546,0.00015457538,0.00038910235,0.001998132,0.000364771,0.9379632,0.00048178798,0.001802364,0.020269249],"study_design_scores_gemma":[0.00009187745,0.002364041,0.12719007,0.0003259671,0.0004496066,0.0022487268,0.0014658506,0.0042278683,0.83023936,0.00072544115,0.030465797,0.0002054362],"about_ca_topic_score_codex":0.0034797897,"about_ca_topic_score_gemma":0.00519007,"teacher_disagreement_score":0.008776723,"about_ca_system_score_codex":0.0004960407,"about_ca_system_score_gemma":0.0016131242,"threshold_uncertainty_score":0.033533037},"labels":[],"label_agreement":null},{"id":"W2061130166","doi":"10.1128/jcm.40.6.2251-2253.2002","title":"Detection of Methicillin Resistance in Primary Blood Culture Isolates of Coagulase-Negative Staphylococci by PCR, Slide Agglutination, Disk Diffusion, and a Commercial Method","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"Latex fixation test; SCCmec; Microbiology; Coagulase; Penicillin; Biology; Agglutination (biology); Direct agglutination test; Micrococcaceae; Penicillin resistance; Penicillin binding proteins; Staphylococcus; Blood culture; Antibiotics; Antibacterial agent; Staphylococcus aureus; Bacteria; Methicillin-resistant Staphylococcus aureus; Antigen; Immunology; Serology; Antibody","score_opus":0.027770657784469476,"score_gpt":0.3397789169449496,"score_spread":0.31200825916048014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061130166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9523733,0.0023130884,0.03917572,0.00022252022,0.00014770745,0.0006472692,0.0015964778,0.00041102065,0.0031128756],"genre_scores_gemma":[0.8952713,0.0027637389,0.091510326,0.00022042841,0.00015041247,0.0009575704,0.003295223,0.00008386274,0.0057471213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988782,0.00022986018,0.00015761354,0.00030218062,0.00032957675,0.00010247514],"domain_scores_gemma":[0.997891,0.00072957244,0.00031788845,0.00023107589,0.0006081684,0.00022242428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059444195,0.00078446744,0.00096916396,0.0010163593,0.00022776211,0.0004687814,0.00038319678,0.0005639182,0.0017212804],"category_scores_gemma":[0.0019874196,0.00037152195,0.00047746458,0.00060668023,0.0003677904,0.0002610081,0.00026043464,0.00068272086,0.0012405094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012600157,0.000086013824,0.003263845,0.00008045143,0.000009712881,0.00014041593,0.00009724092,0.000025768122,0.9930733,0.000029070019,0.000065643006,0.0030026084],"study_design_scores_gemma":[0.00003907702,0.0012324353,0.03761142,0.000034179084,0.0001002881,0.0021235466,0.0002280622,0.0014848679,0.9553019,0.00008732414,0.0017295639,0.000027343005],"about_ca_topic_score_codex":0.0010199142,"about_ca_topic_score_gemma":0.0012002741,"teacher_disagreement_score":0.0017212804,"about_ca_system_score_codex":0.00020992152,"about_ca_system_score_gemma":0.0002328837,"threshold_uncertainty_score":0.0057582855},"labels":[],"label_agreement":null},{"id":"W2061985008","doi":"10.1128/jcm.01905-08","title":"Using a Field Quantitative Real-Time PCR Test To Rapidly Identify Highly Viremic Rift Valley Fever Cases","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Livestock and Fisheries; Health Canada; Centers for Disease Control and Prevention; World Health Organization","keywords":"Rift Valley fever; Viremia; Outbreak; Case fatality rate; Virology; Medicine; Real-time polymerase chain reaction; Internal medicine; Virus; Biology; Epidemiology","score_opus":0.11708901620296439,"score_gpt":0.4621634138077038,"score_spread":0.34507439760473946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061985008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92445475,0.0024139471,0.061385352,0.000556062,0.0003114166,0.001225693,0.002120363,0.0011241012,0.006408382],"genre_scores_gemma":[0.92716473,0.0010943245,0.06650264,0.00078831986,0.00008408905,0.00078570493,0.0016657304,0.00003670868,0.0018777625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836534,0.00049543206,0.000094712355,0.00055914646,0.00034659044,0.00013883576],"domain_scores_gemma":[0.99721056,0.0014009945,0.0005752258,0.00014142405,0.00059622695,0.0000755247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020309968,0.00070225605,0.00062068284,0.0007099383,0.0002395258,0.00080451055,0.00047306405,0.0009547021,0.0010074198],"category_scores_gemma":[0.0035905647,0.00037996095,0.00029897687,0.00043744512,0.0005954232,0.0005401392,0.0001759114,0.000640621,0.0006617413],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014480514,0.0010715759,0.32903057,0.0005247041,0.00012041762,0.00067861483,0.000816602,0.0014813141,0.614696,0.0006297404,0.0021460266,0.04735638],"study_design_scores_gemma":[0.0004276053,0.011574956,0.349555,0.0004718741,0.00043494094,0.008274461,0.0019819106,0.058911216,0.55080074,0.0015949889,0.015746927,0.00022548284],"about_ca_topic_score_codex":0.0011514325,"about_ca_topic_score_gemma":0.001642009,"teacher_disagreement_score":0.0020309968,"about_ca_system_score_codex":0.00045840992,"about_ca_system_score_gemma":0.00038588053,"threshold_uncertainty_score":0.010741055},"labels":[],"label_agreement":null},{"id":"W2062381708","doi":"10.1128/jcm.03636-13","title":"Detection and Differentiation of Herpes Simplex Viruses by Use of the Viper Platform: Advantages, Limitations, and Concerns","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; University Health Network; Capital District Health Authority; Dalhousie University","funders":"","keywords":"VIPeR; Herpes simplex virus; Virology; HSL and HSV; Viper Venoms; Biology; Simplex; Virus; Molecular biology; Venom; Mathematics; Combinatorics; Snake venom","score_opus":0.10789768235158925,"score_gpt":0.3763713918130738,"score_spread":0.2684737094614845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062381708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.56783646,0.06695685,0.34212065,0.0067421757,0.001223303,0.0006897594,0.0005078849,0.0012445477,0.012678352],"genre_scores_gemma":[0.7004303,0.014169076,0.27584141,0.0022873422,0.00038124603,0.00046773517,0.00045618258,0.00016118214,0.005805488],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.98542607,0.0069535132,0.0011137425,0.0012176238,0.004823824,0.00046520086],"domain_scores_gemma":[0.98665166,0.007757829,0.0013045894,0.0010975933,0.0029141672,0.00027410564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.019969651,0.0011207643,0.00088009,0.0016433994,0.0005638126,0.0022091023,0.0018289019,0.0020073585,0.00085721957],"category_scores_gemma":[0.014204573,0.0007790178,0.0005693039,0.0009110308,0.0021308225,0.0017641683,0.0013860678,0.0015296668,0.0007971765],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011767988,0.0002538098,0.10200734,0.0024514631,0.00019623846,0.0020519625,0.0029785193,0.0008527893,0.72326696,0.0029680051,0.002236872,0.15955916],"study_design_scores_gemma":[0.000038346807,0.0020461052,0.037596762,0.0005186297,0.000219659,0.018987365,0.002305354,0.010333378,0.8853776,0.004054934,0.038372993,0.0001490098],"about_ca_topic_score_codex":0.00115902,"about_ca_topic_score_gemma":0.0014206173,"teacher_disagreement_score":0.019969651,"about_ca_system_score_codex":0.0003456252,"about_ca_system_score_gemma":0.0004440234,"threshold_uncertainty_score":0.10561091},"labels":[],"label_agreement":null},{"id":"W2062505339","doi":"10.1128/jcm.03358-13","title":"Cutaneous Manifestations of a Zoonotic Onchocerca Species in an Adult Male, Acquired in Nova Scotia, Canada","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Dermatological diseases and infestations","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St Martha's Regional Hospital; Capital District Health Authority; Dalhousie University","funders":"Mayo Clinic","keywords":"Nova scotia; Histopathology; Onchocerca; Biology; Onchocerciasis; Zoonotic disease; Dermatology; Pathology; Zoology; Medicine; Onchocerca volvulus; Disease; Geography","score_opus":0.040467744397386096,"score_gpt":0.3482483019665853,"score_spread":0.3077805575691992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062505339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907217,0.00041069003,0.00014514773,0.00038033744,0.000026370493,0.000117873904,0.00042326187,0.000014474759,0.007760231],"genre_scores_gemma":[0.99829715,0.00028305198,0.00007734262,0.00013881359,0.00001105726,0.0000025309416,0.00007684914,0.0000018264595,0.0011113276],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9998241,0.000009098271,0.000013997757,0.000023998153,0.00004796979,0.00008101462],"domain_scores_gemma":[0.9996948,0.000027553206,0.000045093122,0.0000056931854,0.00007514407,0.00015171399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000082646366,0.00039356976,0.00020847662,0.000811548,0.0017585217,0.0005016161,0.00036121104,0.0005433262,0.0018416747],"category_scores_gemma":[0.00045721,0.0003272238,0.00016073529,0.00062095415,0.0005040901,0.00019429057,0.0003591774,0.0005571351,0.00024280489],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002492419,0.00038898524,0.3193619,0.00014573902,0.000046149475,0.6577355,0.002430462,0.00031828566,0.011338986,0.00017699205,0.0019137787,0.005893954],"study_design_scores_gemma":[0.00002135032,0.00029462096,0.80013466,0.000058694382,0.000029175002,0.1943048,0.0033408229,0.00034906267,0.000506332,0.000027663618,0.00091709755,0.000015679228],"about_ca_topic_score_codex":0.6271624,"about_ca_topic_score_gemma":0.7983508,"teacher_disagreement_score":0.3728376,"about_ca_system_score_codex":0.002741488,"about_ca_system_score_gemma":0.0021574702,"threshold_uncertainty_score":0.75006664},"labels":[],"label_agreement":null},{"id":"W2063644637","doi":"10.1128/jcm.01595-07","title":"Prevalence of Indeterminate Genetic Species of <i>Burkholderia cepacia</i> Complex in a Cystic Fibrosis Center in Argentina","year":2008,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Burkholderia cepacia complex; Cystic fibrosis; Burkholderia; Bacilli; Microbiology; Biology; Burkholderia cenocepacia; Bacteria; Genetics","score_opus":0.0704897342163427,"score_gpt":0.3745195833659256,"score_spread":0.3040298491495829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063644637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98649305,0.0007074322,0.00022696532,0.00573769,0.000103474405,0.00002887602,0.0002067069,0.000020750116,0.0064749606],"genre_scores_gemma":[0.9969438,0.00046199185,0.0001713729,0.0016310097,0.00013615262,0.000006948596,0.000065850974,0.000004238268,0.0005786933],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997012,0.00006447258,0.00002959369,0.00006842648,0.00005776772,0.00007851459],"domain_scores_gemma":[0.9993492,0.00012492566,0.00015306605,0.000022695845,0.00013677536,0.00021331584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014951572,0.00028116687,0.0003031887,0.0003949595,0.0011759312,0.0004989252,0.00043290708,0.0014157015,0.002324414],"category_scores_gemma":[0.0010413324,0.00020157687,0.000096033706,0.0003339766,0.0006503177,0.0003913678,0.0002523729,0.0008585078,0.00032423798],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022355438,0.00016609697,0.83301026,0.0001000396,0.000016000045,0.1443954,0.0030397612,0.000071289876,0.0054872204,0.00023201792,0.0064860513,0.0067723244],"study_design_scores_gemma":[0.000046717407,0.00037395518,0.7643626,0.00013678418,0.000037353293,0.2209207,0.007701991,0.0006567412,0.0005656352,0.00024289069,0.0049248594,0.000029769424],"about_ca_topic_score_codex":0.02870777,"about_ca_topic_score_gemma":0.03092491,"teacher_disagreement_score":0.02870777,"about_ca_system_score_codex":0.0010788286,"about_ca_system_score_gemma":0.00043907986,"threshold_uncertainty_score":0.05708134},"labels":[],"label_agreement":null},{"id":"W2064913960","doi":"10.1128/jcm.00622-12","title":"Seronegative Hepatitis C Virus Infection in a Child Infected via Mother-to-Child Transmission","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Canadian Institutes of Health Research","keywords":"Virology; Transmission (telecommunications); Hepatitis C virus; Antibody; Virus; Hepatitis a virus; Flaviviridae; Immunology; Viral disease; Medicine; Hepacivirus; Biology","score_opus":0.0439042977492204,"score_gpt":0.4025706295712075,"score_spread":0.3586663318219871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064913960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897113,0.0016461429,0.00091258925,0.001833983,0.00018430818,0.00009218631,0.000100817706,0.00006631337,0.005452428],"genre_scores_gemma":[0.9962275,0.0012691461,0.00066189957,0.0006626521,0.00021171929,0.000019175854,0.000046332934,0.000019141047,0.0008823316],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995907,0.00006941456,0.00004220766,0.000062729545,0.00005823585,0.0001767738],"domain_scores_gemma":[0.9984676,0.0005617727,0.0003965326,0.00007883146,0.00007199329,0.00042319644],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040174407,0.0012861296,0.00087371556,0.0014314088,0.0028049548,0.0011855807,0.0009546298,0.0026027483,0.0021894034],"category_scores_gemma":[0.003634491,0.00080927607,0.0005757092,0.0008942066,0.0023269244,0.0013998483,0.0012436002,0.003377601,0.00053836853],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005773112,0.00006767963,0.04260118,0.000037334066,0.0000051475945,0.95399016,0.0008176411,0.00003325032,0.00070911116,0.00023981748,0.00025826626,0.0011826925],"study_design_scores_gemma":[0.000012381892,0.00026916363,0.018477345,0.000041430878,0.000016316593,0.97888386,0.0009908713,0.00013009486,0.00046375985,0.00010599034,0.00059433625,0.000014534662],"about_ca_topic_score_codex":0.008219211,"about_ca_topic_score_gemma":0.0099387225,"teacher_disagreement_score":0.008219211,"about_ca_system_score_codex":0.0012778334,"about_ca_system_score_gemma":0.0012986746,"threshold_uncertainty_score":0.01634276},"labels":[],"label_agreement":null},{"id":"W2064982453","doi":"10.1128/jcm.01763-06","title":"Evaluation of a New Chromogenic Medium, MRSA <i>Select</i> , for Detection of Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Cefoxitin; Staphylococcus aureus; Microbiology; Chromogenic; Agar; Methicillin-resistant Staphylococcus aureus; Mannitol; Micrococcaceae; Meticillin; Medicine; Antibacterial agent; Chemistry; Biology; Antibiotics; Chromatography; Bacteria","score_opus":0.06552294375434009,"score_gpt":0.38560368295816005,"score_spread":0.32008073920381996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064982453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9761002,0.0044722073,0.016771873,0.0002264096,0.000102346115,0.0001574822,0.0004110875,0.0002147122,0.0015436473],"genre_scores_gemma":[0.96000576,0.0020349433,0.035332233,0.000119520206,0.00006631822,0.00010648591,0.0013666576,0.000042489584,0.00092558615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983021,0.0006127705,0.00010830906,0.00020563565,0.0006861094,0.00008504503],"domain_scores_gemma":[0.99715096,0.0014436439,0.00051081605,0.00016723134,0.00044006383,0.00028730283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001071762,0.00075708795,0.0003755884,0.0011050081,0.00029821138,0.00075808936,0.00057656394,0.000574839,0.0008642343],"category_scores_gemma":[0.0029724455,0.00031681728,0.00032117037,0.0005008047,0.00061170687,0.00045159814,0.00041231027,0.00056471454,0.00042099558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016019582,0.00029317322,0.012242918,0.00020426835,0.00005544977,0.00011773428,0.000090309695,0.00025936554,0.97499293,0.00008044953,0.00016237912,0.009899091],"study_design_scores_gemma":[0.00012342409,0.0072169,0.034076273,0.0000386429,0.00023112024,0.0038631386,0.00015995557,0.0034476034,0.9478864,0.000056596553,0.0028474906,0.00005245689],"about_ca_topic_score_codex":0.0016831949,"about_ca_topic_score_gemma":0.002233069,"teacher_disagreement_score":0.0016831949,"about_ca_system_score_codex":0.00033419285,"about_ca_system_score_gemma":0.00044392416,"threshold_uncertainty_score":0.0056681037},"labels":[],"label_agreement":null},{"id":"W2065953288","doi":"10.1128/jcm.44.2.291-296.2006","title":"Purified Excreted-Secreted Antigens from <i>Trypanosoma cruzi</i> Trypomastigotes as Tools for Diagnosis of Chagas' Disease","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Montreal General Hospital","funders":"Health Canada","keywords":"Trypanosoma cruzi; Chagas disease; Antigen; Microbiology; Virology; Biology; Trypanosomiasis; Kinetoplastida; Protozoa; Trypanosoma; Parasite hosting; Immunology","score_opus":0.0782639559387982,"score_gpt":0.39953840621440584,"score_spread":0.32127445027560764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065953288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933402,0.0041220086,0.0016907357,0.000033646214,0.000009895933,0.000026891137,0.00018691212,0.000017954113,0.0005716719],"genre_scores_gemma":[0.9953733,0.0013658574,0.0026094848,0.00003855127,0.000008324886,0.000013666092,0.00041403182,0.0000028915877,0.00017389657],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99970585,0.00010805984,0.00002995535,0.000049760383,0.00006628359,0.00004012102],"domain_scores_gemma":[0.9998541,0.000047990903,0.000029089888,0.000010685896,0.000031858624,0.000026263711],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043443934,0.00040869345,0.0002946075,0.00057441456,0.00011831024,0.00033509798,0.00014962124,0.00024610633,0.00025185154],"category_scores_gemma":[0.00039271693,0.0001387643,0.00017079411,0.00037074197,0.00023730243,0.00014306385,0.00019423074,0.0002599774,0.00011139276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031521972,0.00007835239,0.038811907,0.00014441392,0.000051897274,0.000105575724,0.000077897974,0.00016545711,0.95373005,0.00004387431,0.000050653613,0.0064246836],"study_design_scores_gemma":[0.00010263301,0.0029716953,0.5451256,0.00011146648,0.00033671246,0.0032325878,0.00029220528,0.0046090647,0.43949002,0.0002320175,0.003469509,0.000026486645],"about_ca_topic_score_codex":0.0010528122,"about_ca_topic_score_gemma":0.0015822991,"teacher_disagreement_score":0.0010528122,"about_ca_system_score_codex":0.00016097564,"about_ca_system_score_gemma":0.00012459204,"threshold_uncertainty_score":0.0022975802},"labels":[],"label_agreement":null},{"id":"W2067293686","doi":"10.1128/jcm.02306-08","title":"Susceptibility of <i>Vibrio parahaemolyticus</i> to Tris-Dependent DNA Degradation during Pulsed-Field Gel Electrophoresis","year":2009,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Vibrio parahaemolyticus; Pulsed-field gel electrophoresis; Gel electrophoresis; Electrophoresis; Microbiology; Tris; Biology; Vibrionaceae; DNA; Bacteria; Molecular biology; Chromatography; Chemistry; Biochemistry; Gene; Genetics; Genotype","score_opus":0.025483361721645975,"score_gpt":0.3428601416937831,"score_spread":0.3173767799721371,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067293686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9586729,0.0021901554,0.0067565455,0.004130729,0.0012160906,0.00010961131,0.0006423448,0.0002161441,0.026065454],"genre_scores_gemma":[0.9849882,0.0009701996,0.0017742631,0.0009949431,0.0002126428,0.000056156547,0.0007124945,0.000036095997,0.010254965],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996729,0.00007967183,0.000031546402,0.00006426873,0.00008740822,0.000064222964],"domain_scores_gemma":[0.99955374,0.00017577628,0.0000486947,0.0000962854,0.00009650695,0.000028970948],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022108224,0.00020799335,0.0001605348,0.00012719553,0.00016066052,0.0003245763,0.0002101955,0.0007959719,0.0033106694],"category_scores_gemma":[0.0007990429,0.00009287666,0.00012191715,0.00015960618,0.00019166162,0.00014890605,0.00013338515,0.0006759543,0.0018097362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053334516,0.00006659509,0.0028316078,0.00013397947,0.000008321756,0.0021072403,0.0002383375,0.00008820919,0.98042905,0.00035690702,0.0035085236,0.009697841],"study_design_scores_gemma":[0.000050437007,0.0022384182,0.044144955,0.000053056316,0.000030017669,0.013418142,0.00062876195,0.0011417472,0.8928098,0.00054975116,0.04491162,0.000023266355],"about_ca_topic_score_codex":0.00051183644,"about_ca_topic_score_gemma":0.0004383996,"teacher_disagreement_score":0.0033106694,"about_ca_system_score_codex":0.00031253955,"about_ca_system_score_gemma":0.0000799194,"threshold_uncertainty_score":0.011075318},"labels":[],"label_agreement":null},{"id":"W2068750743","doi":"10.1128/jcm.01912-14","title":"Instability of Aspergillus Galactomannan in Stored Clinical Samples","year":2014,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Galactomannan; Aspergillus; Microbiology; Aspergillosis; Fungi imperfecti; Biology; Medicine; Immunology","score_opus":0.1333145419802002,"score_gpt":0.42804866135509717,"score_spread":0.29473411937489696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068750743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57969135,0.04916487,0.0074886563,0.31712264,0.020526247,0.00024769903,0.00071677647,0.00060522096,0.024436539],"genre_scores_gemma":[0.9101859,0.005130954,0.0017698618,0.060505707,0.018538805,0.000067646935,0.00016275547,0.000079229576,0.0035592197],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9972408,0.0008012786,0.00039058554,0.00054397486,0.00082201924,0.00020124881],"domain_scores_gemma":[0.99415296,0.0028891421,0.0013394799,0.0005093347,0.0008015344,0.00030764376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013417362,0.00055619114,0.00069946755,0.0007151796,0.00083501113,0.0019844386,0.0010692558,0.0053126034,0.0010743758],"category_scores_gemma":[0.012940605,0.0003328539,0.00033482592,0.0008295058,0.0013829739,0.0014176389,0.0005123446,0.0034377626,0.0018076565],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020473388,0.0004438493,0.084272385,0.0009446438,0.00014362036,0.64202595,0.0047445507,0.00041396933,0.06970567,0.003667966,0.11079621,0.08079385],"study_design_scores_gemma":[0.0000917277,0.0017711226,0.038922876,0.0005293095,0.00020242092,0.7622996,0.0020278601,0.0017490984,0.05002118,0.004262103,0.1379325,0.00019014414],"about_ca_topic_score_codex":0.000525024,"about_ca_topic_score_gemma":0.00052380364,"teacher_disagreement_score":0.0053126034,"about_ca_system_score_codex":0.0016795243,"about_ca_system_score_gemma":0.00026014453,"threshold_uncertainty_score":0.012185872},"labels":[],"label_agreement":null},{"id":"W2069668456","doi":"10.1128/jcm.40.8.2786-2790.2002","title":"Rapid Detection of Methicillin-Resistant Staphylococci from Blood Culture Bottles by Using a Multiplex PCR Assay","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Microbiology; Multiplex; Multiplex polymerase chain reaction; Blood culture; Micrococcaceae; Biology; Polymerase chain reaction; Virology; Medicine; Antibacterial agent; Antibiotics; Gene; Genetics","score_opus":0.06642313127949792,"score_gpt":0.3285745298473268,"score_spread":0.2621513985678289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069668456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.794117,0.00798488,0.18962106,0.0004130117,0.00043337524,0.0007498715,0.002080867,0.0013447719,0.0032552236],"genre_scores_gemma":[0.6656166,0.004928506,0.32228047,0.0002614936,0.0001947073,0.0006839647,0.0018882186,0.000047292724,0.0040988144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982912,0.00032527227,0.00018224226,0.00039158264,0.0006864354,0.00012333799],"domain_scores_gemma":[0.998909,0.0003407864,0.00030822417,0.00007404227,0.00023991524,0.00012801656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010314573,0.0008793887,0.00074184657,0.0015863955,0.0002317516,0.00090023084,0.00047076985,0.00052368286,0.000741117],"category_scores_gemma":[0.0018604277,0.0004278755,0.00030654043,0.000732084,0.00022534799,0.00072560325,0.00043490177,0.00052823086,0.0009517645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024976383,0.00018678672,0.008894663,0.00013912325,0.00002891317,0.00020903166,0.000117610034,0.00023693482,0.9459692,0.00008637659,0.0003070996,0.043574512],"study_design_scores_gemma":[0.000065712484,0.0019179516,0.02624788,0.000113825154,0.00011757563,0.004475992,0.00016370937,0.015362163,0.9428928,0.0002830722,0.008251207,0.00010802917],"about_ca_topic_score_codex":0.00032994003,"about_ca_topic_score_gemma":0.000654521,"teacher_disagreement_score":0.0015863955,"about_ca_system_score_codex":0.0002671339,"about_ca_system_score_gemma":0.00022823885,"threshold_uncertainty_score":0.0054549575},"labels":[],"label_agreement":null},{"id":"W2069810011","doi":"10.1128/jcm.02466-06","title":"<i>Graphium basitruncatum</i>Fungemia in a Patient with Acute Leukemia","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Alberta; University of Toronto","funders":"","keywords":"Fungemia; Scedosporium apiospermum; Opportunistic pathogen; Biology; Microbiology; Leukemia; Opportunistic infection; Mycosis; Medicine; Virology; Immunology; Voriconazole; Pseudomonas aeruginosa; Bacteria; Genetics","score_opus":0.02036741634133298,"score_gpt":0.27221688229238816,"score_spread":0.2518494659510552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069810011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909066,0.0011375548,0.0007168552,0.0011239374,0.000088433604,0.0000781544,0.00011731605,0.00006640517,0.0057646437],"genre_scores_gemma":[0.9985905,0.00030326584,0.0002924537,0.00029242496,0.00008051003,0.000007159894,0.000045690813,0.0000061291184,0.00038181877],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997805,0.000029408291,0.000020533076,0.000053045493,0.000024101413,0.00009244895],"domain_scores_gemma":[0.99937683,0.00016352515,0.00013259212,0.000033410368,0.000034046592,0.00025962677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014037151,0.0010138153,0.000538532,0.00075552793,0.0016462816,0.00078911893,0.00039850624,0.0022989013,0.0015962101],"category_scores_gemma":[0.0012706454,0.00053331023,0.000396877,0.000602755,0.00092455465,0.00095241674,0.00058810436,0.0014850363,0.00041838808],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018204,0.00008719136,0.07044383,0.00006219715,0.000012878965,0.92208195,0.0005582677,0.00011910942,0.0030628073,0.00022084391,0.0005087884,0.002660167],"study_design_scores_gemma":[0.00003841626,0.00034027454,0.035352677,0.000029829864,0.000027982851,0.96136284,0.00042051086,0.00031987866,0.0008214,0.00017945825,0.0010848251,0.00002190024],"about_ca_topic_score_codex":0.002885539,"about_ca_topic_score_gemma":0.0026984839,"teacher_disagreement_score":0.002885539,"about_ca_system_score_codex":0.0004879845,"about_ca_system_score_gemma":0.00044629388,"threshold_uncertainty_score":0.005737424},"labels":[],"label_agreement":null},{"id":"W2070084873","doi":"10.1128/jcm.01402-12","title":"Longitudinal Analysis of the Evolution and Dissemination of Neisseria gonorrhoeae Strains (Saskatchewan, Canada, 2005 to 2008) Reveals Three Major Circulating Strains and Convergent Evolution of Ciprofloxacin and Azithromycin Resistance","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Saskatchewan Disease Control Laboratory","funders":"National Research Council Canada; Saskatchewan Health Research Foundation","keywords":"Neisseria gonorrhoeae; Biology; Multilocus sequence typing; Ciprofloxacin; Penicillin; Azithromycin; Population; Antibiotic resistance; Microbiology; Gonorrhea; Tetracycline; Typing; Antibiotics; Genetics; Virology; Genotype; Medicine; Gene","score_opus":0.026826792216658766,"score_gpt":0.33968788084109636,"score_spread":0.31286108862443757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070084873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990839,0.00010986232,0.00008289459,0.000039612074,0.0000017725815,0.000011215535,0.00045569811,0.0000034466198,0.00021160912],"genre_scores_gemma":[0.99825376,0.0002138544,0.00021962887,0.000046061832,0.0000017528249,0.00001164208,0.0008684921,0.000001986459,0.00038276386],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996278,0.00004410082,0.000021489499,0.000092233444,0.00010161667,0.00011277929],"domain_scores_gemma":[0.99848145,0.000113907314,0.00030343147,0.0000837256,0.00072521,0.00029224026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045001094,0.0003303794,0.00024463597,0.0010460215,0.0009693173,0.00074593263,0.0006087512,0.00034274603,0.00075480697],"category_scores_gemma":[0.0012326973,0.000314918,0.00027524657,0.002105523,0.0006679584,0.0003225801,0.00079343794,0.00051865313,0.00017363949],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005436111,0.000019704481,0.9938279,0.00001070831,0.000048411184,0.00005937337,0.00033159734,0.0001072387,0.0017719673,0.000019177083,0.00014676002,0.0036028072],"study_design_scores_gemma":[0.0000023114335,0.000018987557,0.99906915,0.00000478048,0.000009607068,0.00003419244,0.00037775678,0.0001895708,0.0001260856,0.0000049706096,0.0001586504,0.0000039292086],"about_ca_topic_score_codex":0.93751806,"about_ca_topic_score_gemma":0.96837884,"teacher_disagreement_score":0.06248194,"about_ca_system_score_codex":0.0077462844,"about_ca_system_score_gemma":0.009848959,"threshold_uncertainty_score":0.12569976},"labels":[],"label_agreement":null},{"id":"W2070106938","doi":"10.1128/jcm.42.3.1386-1387.2004","title":"Quality Control Guidelines for MIC Susceptibility Testing of Omiganan Pentahydrochloride (MBI 226), a Novel Antimicrobial Peptide","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Peptides and Activities","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Strong; University of Washington; Cleveland Clinic Foundation; University of Alberta; Cleveland Clinic","keywords":"Antimicrobial; Antimicrobial peptides; Microbiology; Peptide; Bacteria; Biology; Medicine; Biochemistry; Genetics","score_opus":0.14349050455338003,"score_gpt":0.40491735378536964,"score_spread":0.2614268492319896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070106938","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12561008,0.01133493,0.63563985,0.008028793,0.005426596,0.09016615,0.03151396,0.008205544,0.08407415],"genre_scores_gemma":[0.100023404,0.0042937146,0.76237696,0.00467555,0.00054814754,0.060368072,0.047337182,0.0011154028,0.019261563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.87379533,0.045443814,0.025286177,0.006065766,0.04661681,0.0027920702],"domain_scores_gemma":[0.8608792,0.021869093,0.009680337,0.02178375,0.083762,0.002025788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.07003017,0.00221334,0.0030971488,0.0067035016,0.0039780354,0.0035161367,0.0064278864,0.005695904,0.0088843955],"category_scores_gemma":[0.07738001,0.0017774532,0.0029972969,0.0047165356,0.0024850883,0.0014275522,0.0020787714,0.0030139133,0.010376169],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027959957,0.0040938635,0.053560898,0.0067921737,0.00042464284,0.0014253859,0.0043248152,0.0015918019,0.44412124,0.008634313,0.079037145,0.39319775],"study_design_scores_gemma":[0.00066612114,0.006028694,0.079093724,0.006310742,0.00076098455,0.003722126,0.0017729703,0.006340144,0.40414107,0.0023890345,0.48848078,0.00029370427],"about_ca_topic_score_codex":0.008957613,"about_ca_topic_score_gemma":0.009770704,"teacher_disagreement_score":0.07003017,"about_ca_system_score_codex":0.0017769464,"about_ca_system_score_gemma":0.008269451,"threshold_uncertainty_score":0.37035936},"labels":[],"label_agreement":null},{"id":"W2070951218","doi":"10.1128/jcm.41.8.3487-3493.2003","title":"Comparison of the Directigen Flu A+B Test, the QuickVue Influenza Test, and Clinical Case Definition to Viral Culture and Reverse Transcription-PCR for Rapid Diagnosis of Influenza Virus Infection","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine; Virology; Viral culture; Virus; Influenza A virus; Viral disease; Orthomyxoviridae; Reverse transcription polymerase chain reaction; Biology; Gene","score_opus":0.21298380681634374,"score_gpt":0.4834677072730898,"score_spread":0.2704839004567461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070951218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938153,0.001706241,0.0030260175,0.000106428786,0.000061249135,0.000056435245,0.00009593012,0.00003149241,0.0011008607],"genre_scores_gemma":[0.99720144,0.00022698758,0.0021005017,0.00007475447,0.000055790984,0.00003462582,0.00017756465,0.0000068029644,0.00012162139],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98770535,0.0075924257,0.0006362197,0.001076815,0.0025939771,0.00039525446],"domain_scores_gemma":[0.934833,0.057361815,0.0024949508,0.0011468627,0.0027491453,0.0014141924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012555965,0.0007435576,0.00080064527,0.0018791872,0.00016793402,0.00095278025,0.000732577,0.0009107999,0.0008173177],"category_scores_gemma":[0.06315084,0.00065289525,0.00045838696,0.000672722,0.0007261826,0.0012761598,0.0007251861,0.0006775499,0.00038763185],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048629288,0.0002989094,0.94696593,0.0002333817,0.00027603054,0.00039264862,0.00036403057,0.0016695551,0.0026992115,0.00014522418,0.00041379282,0.04167823],"study_design_scores_gemma":[0.0005932807,0.00882303,0.9223932,0.000116707764,0.00033739896,0.006985131,0.00037746064,0.051831003,0.006738532,0.00039524917,0.0013262327,0.000082797815],"about_ca_topic_score_codex":0.00083175406,"about_ca_topic_score_gemma":0.0011343586,"teacher_disagreement_score":0.012555965,"about_ca_system_score_codex":0.00046444405,"about_ca_system_score_gemma":0.00040077209,"threshold_uncertainty_score":0.06640309},"labels":[],"label_agreement":null},{"id":"W2072284189","doi":"10.1128/jcm.40.12.4792-4796.2002","title":"Isolation of <i>Campylobacter fetus</i> subsp. <i>fetus</i> from a Patient with Cellulitis","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Campylobacter fetus; Bacteremia; Cellulitis; Fetus; Isolation (microbiology); Microbiology; Biology; Blood culture; Medicine; Immunology; Pregnancy; Antibiotics","score_opus":0.04079925536280812,"score_gpt":0.2545658405619221,"score_spread":0.21376658519911398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072284189","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98790914,0.0009402819,0.001860476,0.002681162,0.00029164698,0.00010206322,0.00026005876,0.00009708525,0.005858173],"genre_scores_gemma":[0.99436104,0.0005917619,0.0018616675,0.0012201356,0.00037788917,0.000016635846,0.00020407612,0.000037181784,0.0013294888],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99945134,0.00006782912,0.00006358226,0.00015098877,0.00011656142,0.0001497342],"domain_scores_gemma":[0.99862707,0.00055766536,0.00016459236,0.000097961994,0.00015342793,0.00039917862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023369066,0.0010166924,0.0007722489,0.0006842206,0.0014225799,0.0010771849,0.00043785415,0.0023247136,0.0014779515],"category_scores_gemma":[0.0029303895,0.00063027284,0.0005565048,0.0002760634,0.0007510726,0.00068512425,0.00063733576,0.0020934867,0.0008357984],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045230612,0.0005120143,0.095081724,0.0002611675,0.0000378171,0.8313478,0.0046187593,0.00022755336,0.04988155,0.00071753364,0.0051171947,0.011744567],"study_design_scores_gemma":[0.000050275117,0.0009966779,0.032805245,0.0001252523,0.000085855325,0.927026,0.0019570272,0.00076254737,0.02855487,0.00024487733,0.007320395,0.00007100937],"about_ca_topic_score_codex":0.0033694762,"about_ca_topic_score_gemma":0.002061878,"teacher_disagreement_score":0.0033694762,"about_ca_system_score_codex":0.0005889511,"about_ca_system_score_gemma":0.00046189417,"threshold_uncertainty_score":0.006699741},"labels":[],"label_agreement":null},{"id":"W2072463485","doi":"10.1128/jcm.00314-07","title":"<i>Legionella jordanis</i> Lower Respiratory Tract Infection: Case Report and Review","year":2007,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ste. Anne's Hospital; Public Health Agency of Canada; Dr. Georges-L.-Dumont University Hospital Centre; McGill University Health Centre","funders":"","keywords":"Legionella; Respiratory tract infections; Respiratory tract; Legionnaires' disease; Medicine; Microbiology; Intensive care medicine; Respiratory system; Virology; Legionella pneumophila; Biology; Internal medicine; Bacteria","score_opus":0.12517989562539725,"score_gpt":0.4666893493399329,"score_spread":0.34150945371453567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072463485","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00091720023,0.9954346,0.00026853796,0.0005353661,0.00059067854,0.000009186542,0.0000252853,0.0000172758,0.002201985],"genre_scores_gemma":[0.0044591585,0.99288756,0.00043034583,0.00044140973,0.00088655454,0.0000093891385,0.00006188516,0.0000031994875,0.0008205465],"study_design_codex":"design_other","study_design_gemma":"case_report","domain_scores_codex":[0.9997919,0.000033400287,0.000053376967,0.000035895147,0.000062115425,0.000023365217],"domain_scores_gemma":[0.9994742,0.00022396543,0.00011605208,0.000015094262,0.00010985327,0.000060821407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003737151,0.00092134316,0.0011934157,0.0036672717,0.00030452415,0.0007928288,0.0009454092,0.0012494453,0.0025577717],"category_scores_gemma":[0.0006688757,0.00023254687,0.00035242617,0.0033701917,0.0005635005,0.0016504609,0.00046310367,0.0008824886,0.0019633875],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008385584,0.00012544377,0.0019940124,0.020506978,0.000104833394,0.02372476,0.0001986965,0.0004981377,0.0031695857,0.0012157242,0.079472326,0.86890566],"study_design_scores_gemma":[0.000021957267,0.00015906215,0.0051320363,0.007820143,0.00017543236,0.17994943,0.0004059312,0.00021203546,0.00089576846,0.0009940376,0.80417836,0.000055856148],"about_ca_topic_score_codex":0.0012541452,"about_ca_topic_score_gemma":0.0022808567,"teacher_disagreement_score":0.0036672717,"about_ca_system_score_codex":0.00047766147,"about_ca_system_score_gemma":0.0008192382,"threshold_uncertainty_score":0.008556664},"labels":[],"label_agreement":null},{"id":"W2073126219","doi":"10.1128/jcm.44.2.400-405.2006","title":"High Analytical Sensitivity and Low Rates of Inhibition May Contribute to Detection of <i>Chlamydia trachomatis</i> in Significantly More Women by the APTIMA Combo 2 Assay","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Urine; Nucleic Acid Amplification Tests; Chlamydiales; Chlamydiaceae; Medicine; Virology; Biology; Internal medicine; Gynecology; Molecular biology","score_opus":0.018428979874171948,"score_gpt":0.33365710338129195,"score_spread":0.31522812350712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073126219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97326106,0.0030811066,0.015159614,0.0003753026,0.00006107915,0.00020599649,0.00038125858,0.0002843047,0.007190379],"genre_scores_gemma":[0.99362034,0.0002361499,0.0048981775,0.00029048845,0.000048586902,0.000056971803,0.00020889842,0.000034413144,0.0006059556],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9889637,0.0049325083,0.00076659466,0.00092635525,0.003720697,0.0006901415],"domain_scores_gemma":[0.9880229,0.007354643,0.0022567343,0.0008561464,0.0012775232,0.00023203052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010210139,0.0007281073,0.00094573305,0.00085272425,0.0002507188,0.0012565994,0.00044481517,0.0006976102,0.0012343163],"category_scores_gemma":[0.013250145,0.0005602649,0.00035441053,0.0003870381,0.0008073101,0.00039808403,0.0004935182,0.0008302195,0.00063357817],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001514792,0.00044744698,0.72014683,0.00046188984,0.0002640835,0.00029373128,0.00063024723,0.0009585771,0.200488,0.00038506862,0.0009900728,0.07341924],"study_design_scores_gemma":[0.000059412843,0.0036233917,0.7095682,0.000100607685,0.0004021963,0.0060829474,0.00023649448,0.0064702826,0.26561984,0.00035042086,0.007416584,0.000069565605],"about_ca_topic_score_codex":0.002098692,"about_ca_topic_score_gemma":0.001349991,"teacher_disagreement_score":0.010210139,"about_ca_system_score_codex":0.00045053885,"about_ca_system_score_gemma":0.00034910196,"threshold_uncertainty_score":0.05399704},"labels":[],"label_agreement":null},{"id":"W2073663493","doi":"10.1128/jcm.03257-13","title":"PCR-Based<i>In Vitro</i>Synthesis of Hepatitis C Virus NS3 Protease for Rapid Phenotypic Resistance Testing of Protease Inhibitors","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; U.S. Food and Drug Administration; Petroleum Technology Alliance Canada","keywords":"Telaprevir; NS3; Protease; Virology; Hepatitis C virus; Biology; Protease inhibitor (pharmacology); Proteases; Hepacivirus; Virus; Microbiology; Enzyme; Viral load; Ribavirin; Biochemistry","score_opus":0.0680834580675401,"score_gpt":0.3698453560243558,"score_spread":0.30176189795681574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073663493","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4039989,0.0024650055,0.5844066,0.0004185766,0.0002396551,0.0007663509,0.0019170113,0.0017130179,0.004074799],"genre_scores_gemma":[0.5925513,0.001807891,0.39735374,0.00034297747,0.00010917565,0.0004667154,0.0034522223,0.00035571418,0.0035602099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737585,0.0012072546,0.00026110356,0.0004633371,0.0005096985,0.00018279858],"domain_scores_gemma":[0.99766314,0.0010029576,0.00055982586,0.00033242718,0.00035359396,0.000088054694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014304788,0.0011742248,0.0006674942,0.0005591841,0.00021871658,0.00062350684,0.0004703554,0.00059847056,0.0013749991],"category_scores_gemma":[0.0025731886,0.00042182795,0.000734161,0.0003140545,0.00047395373,0.00041138974,0.0004078028,0.0009757687,0.0020636888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005690543,0.00005052188,0.000484304,0.00006229838,0.0000070114093,0.000036234993,0.000025378644,0.00015740379,0.99428636,0.000092840346,0.00007673099,0.0046640895],"study_design_scores_gemma":[0.0000052551804,0.00025649203,0.0008040431,0.000005935464,0.000015159746,0.00023229871,0.000015562613,0.0015751771,0.9961182,0.000042428783,0.0009190599,0.000010361806],"about_ca_topic_score_codex":0.0002614614,"about_ca_topic_score_gemma":0.00046845307,"teacher_disagreement_score":0.0014304788,"about_ca_system_score_codex":0.00021894526,"about_ca_system_score_gemma":0.00038373144,"threshold_uncertainty_score":0.0075652003},"labels":[],"label_agreement":null},{"id":"W2074055101","doi":"10.1128/jcm.01505-09","title":"Correlation of Genotype and <i>In Vitro</i> Susceptibilities of <i>Cryptococcus gattii</i> Strains from the Pacific Northwest of the United States","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Vedecká Grantová Agentúra MŠVVaŠ SR a SAV","keywords":"Cryptococcus gattii; Genotype; Biology; Cryptococcus; Microbiology; Genetics; Gene","score_opus":0.027423176969108943,"score_gpt":0.3157803031793533,"score_spread":0.28835712621024434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074055101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994491,0.00006800456,0.00003761458,0.000017445505,0.000002450896,0.0000017713634,0.00012830363,0.0000012468923,0.00029389307],"genre_scores_gemma":[0.99963844,0.00003318543,0.000050077215,0.000013626329,0.0000014029496,0.0000018349216,0.0001477147,0.0000016688649,0.00011205832],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99980444,0.000044334574,0.000034248194,0.000042011012,0.000036622117,0.000038446724],"domain_scores_gemma":[0.99882036,0.00040797453,0.00035242832,0.000092450064,0.00017933025,0.00014747084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017388222,0.00014068038,0.00016028319,0.0002506968,0.00016024499,0.00037002575,0.00009488114,0.00018896512,0.0012910265],"category_scores_gemma":[0.0017181091,0.0001402883,0.000116639625,0.00022830632,0.00016003533,0.00013724389,0.000097833814,0.0003141042,0.00019270777],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030729186,0.0000305792,0.9935689,0.0000064101637,0.000025883539,0.0001276617,0.00007935469,0.00014251094,0.0035725927,0.000016417798,0.0001352349,0.0019870768],"study_design_scores_gemma":[0.000008268386,0.00013310614,0.9965978,0.000008251103,0.000023885656,0.0008824841,0.0002858347,0.00034818912,0.0013808627,0.000035106423,0.00029254446,0.0000036219246],"about_ca_topic_score_codex":0.010922105,"about_ca_topic_score_gemma":0.011776394,"teacher_disagreement_score":0.010922105,"about_ca_system_score_codex":0.00021827682,"about_ca_system_score_gemma":0.00019360633,"threshold_uncertainty_score":0.021717072},"labels":[],"label_agreement":null},{"id":"W2074586104","doi":"10.1128/jcm.02432-06","title":"Development of a Serological Assay Based on a Synthetic Peptide Selected from the VP0 Capsid Protein for Detection of Human Parechoviruses","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Serology; Capsid; Seroprevalence; Virology; Peptide; Biology; Antibody; Medicine; Virus; Immunology; Biochemistry","score_opus":0.11298918344626836,"score_gpt":0.4238898370145571,"score_spread":0.3109006535682888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074586104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8017505,0.005358479,0.18429565,0.000360567,0.00042369578,0.0017077113,0.0010610623,0.0008728439,0.0041694064],"genre_scores_gemma":[0.7687584,0.002057238,0.22284448,0.00046983417,0.00015475249,0.0013596282,0.0026286165,0.000038785613,0.0016882903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909437,0.0003185627,0.00006392861,0.00016548613,0.00026495827,0.000092644455],"domain_scores_gemma":[0.9985998,0.0006355538,0.00015705203,0.00008089467,0.0003546877,0.00017200825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010689212,0.0011048365,0.00067691,0.0010734361,0.00019775551,0.0005107367,0.0008245222,0.0010677909,0.0008622367],"category_scores_gemma":[0.0019814454,0.0005009565,0.0003955914,0.00034125696,0.0003722645,0.00028350388,0.00046672192,0.0010200259,0.0007009529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016666504,0.00028626766,0.003002219,0.00011012808,0.000019375779,0.00007094195,0.000021668906,0.00023038697,0.9863153,0.00008569229,0.00012863717,0.0095626945],"study_design_scores_gemma":[0.00035315452,0.0069647343,0.032529034,0.00010055683,0.00013212186,0.0038888382,0.00008404201,0.015707536,0.9338017,0.0003801767,0.005993593,0.00006446558],"about_ca_topic_score_codex":0.0002041708,"about_ca_topic_score_gemma":0.00020638901,"teacher_disagreement_score":0.0011048365,"about_ca_system_score_codex":0.00020772597,"about_ca_system_score_gemma":0.0002675244,"threshold_uncertainty_score":0.0056530833},"labels":[],"label_agreement":null},{"id":"W2074978731","doi":"10.1128/jcm.41.8.3631-3635.2003","title":"Comparative Evaluation of Real-Time PCR Assays for Detection of the Human Metapneumovirus","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Human metapneumovirus; Virology; Metapneumovirus; Biology; Real-time polymerase chain reaction; Bronchiolitis; Paramyxoviridae; Nucleoprotein; Polymerase chain reaction; Respiratory tract infections; Gene; Virus; Viral disease; Respiratory system; Genetics","score_opus":0.2978214499956174,"score_gpt":0.5302914210365745,"score_spread":0.23246997104095707,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074978731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8808331,0.010040973,0.104428895,0.00024558167,0.00040893388,0.0003211648,0.00043734993,0.00059394824,0.0026901292],"genre_scores_gemma":[0.81441957,0.0027231055,0.17781323,0.00031244726,0.00024150571,0.0008923922,0.001517353,0.000094838455,0.0019855103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9845574,0.0086692525,0.00088863145,0.002104766,0.0032765926,0.00050339976],"domain_scores_gemma":[0.98331577,0.012805359,0.0010396902,0.0007206207,0.0018558155,0.00026265296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008119104,0.0012438311,0.000819738,0.0017172465,0.0002470439,0.0009377617,0.00086413714,0.0010818477,0.0011530085],"category_scores_gemma":[0.013511922,0.0008255788,0.0005641731,0.00065105385,0.0008581501,0.0007407566,0.0004304621,0.00076992664,0.00071243587],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023969205,0.00041966204,0.0098671205,0.00045004298,0.00015081432,0.00011922206,0.00043167488,0.0010325355,0.96038944,0.00033709555,0.00019850956,0.024207028],"study_design_scores_gemma":[0.00013544768,0.004841025,0.014479892,0.00006202985,0.00022560635,0.0013796795,0.00018647854,0.0116715105,0.96416104,0.00034323815,0.0024452792,0.000068792004],"about_ca_topic_score_codex":0.0001842002,"about_ca_topic_score_gemma":0.00027580795,"teacher_disagreement_score":0.008119104,"about_ca_system_score_codex":0.0004446554,"about_ca_system_score_gemma":0.00021737193,"threshold_uncertainty_score":0.04293847},"labels":[],"label_agreement":null},{"id":"W2075168850","doi":"10.1128/jcm.01440-12","title":"Comparison of BD GeneOhm Cdiff and Seegene Seeplex ACE PCR Assays Using Toxigenic Clostridium difficile Culture for Direct Detection of <i>tcdB</i> from Stool Specimens","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Consortium canadien en neurodégénérescence associée au vieillissement","keywords":"Concordance; Clostridium difficile; Microbiology; Predictive value; Medicine; Biology; Internal medicine; Antibiotics","score_opus":0.12276926307972733,"score_gpt":0.43785920199639233,"score_spread":0.31508993891666504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075168850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9639483,0.0033052382,0.027895277,0.00025657527,0.00016300207,0.0001526789,0.00055116153,0.00032301783,0.0034046806],"genre_scores_gemma":[0.9287798,0.0011284698,0.066765696,0.00038326142,0.000067203706,0.00018709654,0.0012185703,0.00007189808,0.0013980947],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.988903,0.0045117904,0.0007292644,0.0018936372,0.0034922047,0.00047016644],"domain_scores_gemma":[0.98112524,0.014400618,0.0013773795,0.0008903638,0.0018755456,0.00033074056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0060083554,0.0009435365,0.00079494773,0.0017533305,0.0001556442,0.0011295252,0.00061179436,0.0012439821,0.0009260018],"category_scores_gemma":[0.016306309,0.001063292,0.0004680554,0.0007952944,0.0006805641,0.00073845003,0.00060252607,0.00058919674,0.0006722734],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010079048,0.00079172675,0.29786447,0.0010334048,0.0004173844,0.00030454993,0.0010766061,0.0030168132,0.57603204,0.000766085,0.0011064587,0.10751139],"study_design_scores_gemma":[0.000726041,0.009519972,0.36950067,0.00033169173,0.0007694943,0.0051369476,0.00042336798,0.049244158,0.5533978,0.00075025624,0.009993343,0.00020627817],"about_ca_topic_score_codex":0.0008449934,"about_ca_topic_score_gemma":0.0021117807,"teacher_disagreement_score":0.0060083554,"about_ca_system_score_codex":0.0005317744,"about_ca_system_score_gemma":0.00040065974,"threshold_uncertainty_score":0.031775594},"labels":[],"label_agreement":null},{"id":"W2075411360","doi":"10.1128/jcm.06796-11","title":"Development of a Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Capripoxviruses","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"Animal and Plant Health Inspection Service; Commonwealth Scientific and Industrial Research Organisation; Australian Government; Agricultural Research Service; Australian Wool Innovation","keywords":"Loop-mediated isothermal amplification; Biology; Molecular biology; Virology; Agarose gel electrophoresis; Agarose; Polymerase chain reaction; Positive control; Diagnostic test; Real-time polymerase chain reaction; Gene; Veterinary medicine; DNA; Medicine; Genetics","score_opus":0.09726856913266083,"score_gpt":0.39815090142164233,"score_spread":0.30088233228898154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075411360","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.508407,0.0027170028,0.48069933,0.00032173423,0.00019571814,0.0008341455,0.00082111266,0.0018220535,0.0041819056],"genre_scores_gemma":[0.62818646,0.0017244575,0.3631813,0.00024466432,0.000076766795,0.00094658614,0.0018499688,0.00010849274,0.0036813116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980368,0.00054438354,0.00014621651,0.0004000466,0.0007379983,0.00013450264],"domain_scores_gemma":[0.99880135,0.00058236334,0.00015483254,0.00009570247,0.0002977113,0.00006806973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016337368,0.0008850827,0.0006574562,0.0011633497,0.00029662205,0.00064365676,0.00081124343,0.0010489853,0.00058838073],"category_scores_gemma":[0.0018601711,0.0006365782,0.0006230866,0.00032117678,0.00043164202,0.0005710753,0.00061067555,0.0009928755,0.00053655787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006680639,0.000074048985,0.0007359493,0.00008326791,0.000014705719,0.00005069229,0.000046017758,0.00057159783,0.9883266,0.00012215986,0.0000935643,0.009814595],"study_design_scores_gemma":[0.000017064896,0.00049631833,0.002323891,0.000024200088,0.00003670061,0.00032752697,0.000025671687,0.0146773895,0.97952914,0.00008102517,0.0024285333,0.00003263728],"about_ca_topic_score_codex":0.00049828313,"about_ca_topic_score_gemma":0.00066289137,"teacher_disagreement_score":0.0016337368,"about_ca_system_score_codex":0.0004997451,"about_ca_system_score_gemma":0.0004841709,"threshold_uncertainty_score":0.0086401105},"labels":[],"label_agreement":null},{"id":"W2076897528","doi":"10.1128/jcm.41.9.4279-4284.2003","title":"Phage-Based Typing Scheme for <i>Salmonella enterica</i> Serovar Heidelberg, a Causative Agent of Food Poisonings in Canada","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"National Research Council Canada; Université Laval; Health Canada","funders":"","keywords":"Subtyping; Serotype; Phage typing; Pulsed-field gel electrophoresis; Typing; Microbiology; Salmonella enterica; Salmonella; Outbreak; Biology; Virology; Antibiotic resistance; Multiple drug resistance; Bacteriophage; Drug resistance; Bacteria; Genotype; Escherichia coli; Antibiotics; Genetics; Gene","score_opus":0.03445066284476252,"score_gpt":0.3085289212514408,"score_spread":0.2740782584066783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076897528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9501391,0.0008247723,0.03768407,0.00022003,0.000070461414,0.0013348428,0.003796933,0.00036812367,0.0055616167],"genre_scores_gemma":[0.84698963,0.0016426243,0.13223723,0.00023524096,0.00002044229,0.0005026118,0.009930938,0.00006232558,0.00837905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993919,0.000044500168,0.00006406643,0.00011054402,0.00029143222,0.000097574004],"domain_scores_gemma":[0.9992205,0.000043918106,0.00009476626,0.000055715638,0.00047946477,0.00010555138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044541605,0.00037316114,0.0002681081,0.0012876102,0.0009840234,0.0006530555,0.00047078088,0.0002272671,0.00085836794],"category_scores_gemma":[0.0008986656,0.00024694475,0.0002861619,0.0013802219,0.0003600231,0.00021143856,0.0004640845,0.00037519564,0.00040627478],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008710047,0.00020080784,0.18124717,0.00028312425,0.00003977522,0.00036476532,0.0013609626,0.0012709093,0.73450124,0.00040313968,0.0018570202,0.07760007],"study_design_scores_gemma":[0.00009228408,0.0012315356,0.6780311,0.00016561734,0.00032610385,0.0020821951,0.0023370183,0.012778364,0.2625271,0.00016696358,0.040130116,0.00013167749],"about_ca_topic_score_codex":0.5726147,"about_ca_topic_score_gemma":0.6437026,"teacher_disagreement_score":0.42738527,"about_ca_system_score_codex":0.0027152256,"about_ca_system_score_gemma":0.0049606324,"threshold_uncertainty_score":0.85980445},"labels":[],"label_agreement":null},{"id":"W2077435164","doi":"10.1128/jcm.44.3.725-728.2006","title":"Sensitivities of Antigen Detection and PCR Assays Greatly Increased Compared to That of the Standard Culture Method for Screening for Group B Streptococcus Carriage in Pregnant Women","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Streptococcus; Carriage; Group B; Antigen; Microbiology; Medicine; Context (archaeology); Colistin; Streptococcus agalactiae; Biology; Antibiotics; Immunology; Internal medicine; Bacteria; Pathology","score_opus":0.04562714159393295,"score_gpt":0.3668173211981549,"score_spread":0.32119017960422197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077435164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.70418763,0.030159814,0.2416103,0.0013181524,0.0016775697,0.00070556893,0.0014856952,0.0018745455,0.016980588],"genre_scores_gemma":[0.73570573,0.00809414,0.24279656,0.0012703412,0.0008266646,0.00076045305,0.0014526582,0.00017201826,0.008921399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9849996,0.0065260762,0.0008309138,0.0028664733,0.0042163576,0.0005606572],"domain_scores_gemma":[0.9844332,0.009843879,0.0011180824,0.0012397355,0.003089581,0.0002756204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0064021037,0.001343456,0.0012173703,0.001273921,0.0002340133,0.0009480752,0.0006808784,0.0013599932,0.0022222342],"category_scores_gemma":[0.013109879,0.0012021002,0.00072016066,0.0010153919,0.00079042086,0.0008341081,0.0008093717,0.0015593375,0.0024143045],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010645078,0.00050816656,0.054396264,0.0012202534,0.00044726182,0.00028825295,0.0004278045,0.002667332,0.8172057,0.00060620083,0.0018455395,0.11932268],"study_design_scores_gemma":[0.00012771014,0.005740041,0.18535797,0.0003055041,0.00068157195,0.006986762,0.00032123137,0.021869289,0.7449154,0.0014225882,0.032058403,0.00021357318],"about_ca_topic_score_codex":0.000902371,"about_ca_topic_score_gemma":0.0012138874,"teacher_disagreement_score":0.0064021037,"about_ca_system_score_codex":0.00044937883,"about_ca_system_score_gemma":0.0005078476,"threshold_uncertainty_score":0.033858},"labels":[],"label_agreement":null},{"id":"W2077465735","doi":"10.1128/jcm.00347-12","title":"Sensitivity and Specificity of a Competitive Enzyme-Linked Immunosorbent Assay Relative to Quantitative Reverse Transcriptase PCR for Detection of Anaplasma marginale and A. phagocytophilum","year":2012,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Virology; Reverse transcriptase; Anaplasma phagocytophilum; Biology; Enzyme; Polymerase chain reaction; Gene; Immunology; Antibody; Genetics; Biochemistry","score_opus":0.0483342268736489,"score_gpt":0.3197205856852813,"score_spread":0.27138635881163237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077465735","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5631602,0.044119995,0.28994122,0.022351198,0.011360058,0.001657543,0.0018947554,0.0035115315,0.0620035],"genre_scores_gemma":[0.9065042,0.0029566034,0.07692892,0.0045675077,0.0019004837,0.00070304825,0.0008522736,0.00012022486,0.0054666116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98340523,0.007001988,0.0012577522,0.0021032053,0.005542098,0.00068973843],"domain_scores_gemma":[0.9712133,0.023081632,0.0008269029,0.0012522447,0.0033876111,0.00023834502],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007366408,0.0012156635,0.0012781462,0.0011309352,0.0004888864,0.0015004892,0.0015474756,0.0037920391,0.0034713685],"category_scores_gemma":[0.022890225,0.0005028275,0.0004813424,0.00061861257,0.001536634,0.0008083435,0.0003470522,0.0031939598,0.0032090826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027035177,0.0008312511,0.028711768,0.0012590769,0.00011255432,0.003494195,0.0010950735,0.00090124685,0.83901894,0.0033081002,0.009983632,0.10858063],"study_design_scores_gemma":[0.00030905157,0.008728962,0.037215915,0.00034425018,0.00034429846,0.08371482,0.0006934806,0.027837383,0.7664439,0.004255214,0.06987714,0.00023559548],"about_ca_topic_score_codex":0.0006563018,"about_ca_topic_score_gemma":0.00061287376,"teacher_disagreement_score":0.007366408,"about_ca_system_score_codex":0.0012277991,"about_ca_system_score_gemma":0.00045570734,"threshold_uncertainty_score":0.038957715},"labels":[],"label_agreement":null},{"id":"W2077636176","doi":"10.1128/jcm.41.8.3897-3900.2003","title":"Evaluation of Susceptibility of Human Herpesvirus 8 to Antiviral Drugs by Quantitative Real-Time PCR","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Cidofovir; Foscarnet; Ganciclovir; Human herpesvirus 6; Adefovir; Virology; Real-time polymerase chain reaction; Antiviral drug; In vitro; Pharmacology; Human cytomegalovirus; Medicine; Herpesviridae; Biology; Virus; Viral disease; Lamivudine","score_opus":0.0706805839993941,"score_gpt":0.4338747631274662,"score_spread":0.3631941791280721,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077636176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5044043,0.008298354,0.4729422,0.00041683792,0.0006427738,0.0018439143,0.004380345,0.0021239521,0.00494727],"genre_scores_gemma":[0.4028499,0.0067790295,0.570221,0.00039448604,0.00025343065,0.003965514,0.006455937,0.00029519375,0.008785464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965965,0.0012498933,0.00035684276,0.00065859524,0.00087580376,0.00026223532],"domain_scores_gemma":[0.9964644,0.0019744823,0.00040765354,0.0003105343,0.0007306516,0.0001122605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026160593,0.0015740943,0.0013096898,0.001009071,0.0003024046,0.0010657324,0.0011472311,0.00084905425,0.0023386034],"category_scores_gemma":[0.0032996188,0.0008421154,0.0005556009,0.0007936678,0.00092431775,0.0008346297,0.00046361558,0.0016270563,0.0015296959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025753316,0.00012789342,0.0006191253,0.00016964163,0.000018590603,0.000030078758,0.00009023227,0.00024060126,0.99326354,0.00013108939,0.00008111466,0.004970522],"study_design_scores_gemma":[0.000034317378,0.0010077053,0.0012422567,0.000018325514,0.000046674475,0.00014040805,0.000047104608,0.0044964897,0.99034697,0.00014912973,0.0024426645,0.000027930098],"about_ca_topic_score_codex":0.00032902532,"about_ca_topic_score_gemma":0.0006230191,"teacher_disagreement_score":0.0026160593,"about_ca_system_score_codex":0.0005094992,"about_ca_system_score_gemma":0.00044725233,"threshold_uncertainty_score":0.013835251},"labels":[],"label_agreement":null},{"id":"W2077892389","doi":"10.1128/jcm.01775-09","title":"Potential for Erroneous Results Indicating Resistance When Using the Bactec MGIT 960 System for Testing Susceptibility of <i>Mycobacterium tuberculosis</i> to Pyrazinamide","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Toronto Public Health","funders":"","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Microbiology; Tuberculosis; Biology; Mycobacterium; Virology; Medicine; Pathology","score_opus":0.07723326311836895,"score_gpt":0.40330440151742075,"score_spread":0.3260711383990518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077892389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9814181,0.0013603949,0.010736935,0.0006523083,0.00025145942,0.00020511798,0.0002471806,0.00043808273,0.0046905293],"genre_scores_gemma":[0.9877407,0.000339445,0.010221959,0.00060153776,0.000052490577,0.000039937793,0.00021572095,0.00009404112,0.0006942597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.95955694,0.016237754,0.0047815,0.002277926,0.015332781,0.0018130267],"domain_scores_gemma":[0.95789516,0.024206897,0.00805601,0.0046403967,0.004513045,0.00068855466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01824892,0.0009885022,0.0008727458,0.0033851087,0.00080612936,0.0016266722,0.0015725686,0.0017667591,0.0011234445],"category_scores_gemma":[0.07062556,0.0009162211,0.0006894949,0.0023281013,0.0017571393,0.0009118441,0.0011430607,0.0011647791,0.0012365398],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034549292,0.00034009825,0.83189756,0.00073889364,0.00021920314,0.026832622,0.0077597112,0.0013561547,0.059822343,0.0007701343,0.002889427,0.06391888],"study_design_scores_gemma":[0.00010842852,0.0025813698,0.4331142,0.0006550545,0.0007959125,0.11050304,0.004040203,0.013297267,0.41126132,0.0016678558,0.021761643,0.00021362117],"about_ca_topic_score_codex":0.0038887686,"about_ca_topic_score_gemma":0.0028344928,"teacher_disagreement_score":0.01824892,"about_ca_system_score_codex":0.0007622917,"about_ca_system_score_gemma":0.0004440315,"threshold_uncertainty_score":0.09651065},"labels":[],"label_agreement":null},{"id":"W2078287156","doi":"10.1128/jcm.43.4.1684-1688.2005","title":"Identification of Genotype 3 Hepatitis E Virus (HEV) in Serum and Fecal Samples from Pigs in Thailand and Mexico, Where Genotype 1 and 2 HEV Strains Are Prevalent in the Respective Human Populations","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis Viruses Studies and Epidemiology","field":"Medicine","cited_by":185,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Yang-Ming University; U.S. Department of Agriculture","keywords":"Hepatitis E virus; Genotype; Virology; Biology; Feces; Hepatitis E; Gene; Microbiology; Genetics","score_opus":0.11631102391853708,"score_gpt":0.41016301664364846,"score_spread":0.29385199272511137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078287156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99963677,0.000043755474,0.00010189609,0.000009405212,0.00000220315,0.000007893937,0.000094308874,0.0000034978598,0.00010028822],"genre_scores_gemma":[0.9981419,0.00014255893,0.0006202865,0.000058929574,0.000006673626,0.000020722342,0.00073227327,0.0000023067328,0.00027437997],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998467,0.000027819677,0.000013476846,0.00004545925,0.000026310698,0.00004022223],"domain_scores_gemma":[0.999726,0.000060310012,0.000109583525,0.000011145362,0.000033897893,0.00005902591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002869873,0.00035672076,0.0001875435,0.00045205897,0.00041054495,0.00035352368,0.00008638762,0.00044464413,0.00044264045],"category_scores_gemma":[0.00046354753,0.00026775405,0.00020160033,0.0002768718,0.00040363445,0.0001922121,0.00017575278,0.0002633774,0.0001289005],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005946206,0.00012493916,0.8165988,0.000087834786,0.000042346684,0.0011478547,0.0009075114,0.00008867307,0.17639478,0.000017853776,0.00011871564,0.0038759625],"study_design_scores_gemma":[0.000018367879,0.00079553406,0.991331,0.000012152659,0.000024781071,0.0012631273,0.0005099229,0.00016214924,0.0055750394,0.0000083486975,0.0002937796,0.000005754317],"about_ca_topic_score_codex":0.002882857,"about_ca_topic_score_gemma":0.0046142763,"teacher_disagreement_score":0.002882857,"about_ca_system_score_codex":0.00022649937,"about_ca_system_score_gemma":0.0002657971,"threshold_uncertainty_score":0.005732119},"labels":[],"label_agreement":null},{"id":"W2080723443","doi":"10.1128/jcm.03527-14","title":"Defining the Phylogenomics of Shigella Species: a Pathway to Diagnostics","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"Shigella; Biology; Shigellosis; Shigella dysenteriae; Clade; Shigella boydii; Shigella flexneri; Amplicon; Phylogenomics; Genetics; Genome; Microbiology; Pseudogene; Polymerase chain reaction; Phylogenetics; Virology; Escherichia coli; Gene","score_opus":0.0603083098840824,"score_gpt":0.3737427257183356,"score_spread":0.3134344158342532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080723443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57986075,0.092028916,0.28338197,0.03134907,0.00021191707,0.0002857937,0.0036316076,0.0010206341,0.0082293395],"genre_scores_gemma":[0.74026465,0.029507155,0.22361816,0.0024238313,0.00019201713,0.000122068996,0.0018881274,0.00012372625,0.001860252],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996613,0.00015706611,0.00001938194,0.000060912676,0.000056406247,0.000044960903],"domain_scores_gemma":[0.9990558,0.0003448848,0.00014840922,0.00009819321,0.00019101008,0.00016170253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016494571,0.0005415832,0.00066294975,0.0015300513,0.00031808417,0.0017326757,0.00053301215,0.0005361438,0.0009542806],"category_scores_gemma":[0.0023051437,0.00028470112,0.00023399967,0.00079099805,0.0007698811,0.0018007023,0.0007971309,0.0017502985,0.00036245026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006241371,0.00031691388,0.14572753,0.0010456208,0.00011178642,0.00043684553,0.0013168175,0.003938359,0.4478361,0.017525608,0.0030125112,0.37810773],"study_design_scores_gemma":[0.000106341155,0.0026009858,0.42787808,0.0018570306,0.0002865538,0.0048916377,0.008200839,0.06544195,0.18508655,0.14756775,0.15582414,0.00025813724],"about_ca_topic_score_codex":0.0010722593,"about_ca_topic_score_gemma":0.0012098103,"teacher_disagreement_score":0.0017326757,"about_ca_system_score_codex":0.0006756146,"about_ca_system_score_gemma":0.0010969505,"threshold_uncertainty_score":0.008723259},"labels":[],"label_agreement":null},{"id":"W2081123477","doi":"10.1128/jcm.02630-05","title":"Genetic Determinants and Polymorphisms Specific for Human-Adapted Serovars of <i>Salmonella enterica</i> That Cause Enteric Fever","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Serotype; Salmonella enterica; Biology; Salmonella; Microbiology; Typhoid fever; Salmonella typhi; Virology; Genetics; Gene; Bacteria; Escherichia coli","score_opus":0.0829913250152564,"score_gpt":0.32344638969322703,"score_spread":0.24045506467797062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081123477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981065,0.00012919572,0.00066933205,0.000028578392,0.0000047418634,0.000008715685,0.0004976302,0.000008902194,0.0005463207],"genre_scores_gemma":[0.9975625,0.00009694364,0.0010281551,0.000052149804,0.0000055696732,0.000015699809,0.00083406986,0.000004704578,0.00040016626],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998362,0.000031012307,0.000011784851,0.00006514463,0.00002546249,0.000030353021],"domain_scores_gemma":[0.9998516,0.000032656906,0.000057948473,0.000018021274,0.00001945831,0.000020411277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013086884,0.0001675944,0.00012932032,0.00025926475,0.000084205276,0.00014879378,0.00006053682,0.00017368403,0.0015801536],"category_scores_gemma":[0.0002558188,0.00007890761,0.00012554013,0.0002636422,0.00014107747,0.00005928996,0.00008024847,0.00019522948,0.00017853652],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005236495,0.000063677864,0.06794084,0.00005056051,0.000039869265,0.00013972179,0.00008230011,0.00015154164,0.9258805,0.00010838335,0.00019569116,0.004823305],"study_design_scores_gemma":[0.000018107945,0.0006527993,0.90908587,0.000018158164,0.00005885563,0.0014971688,0.00019351758,0.0006721444,0.08532949,0.00012399533,0.0023401922,0.0000096521835],"about_ca_topic_score_codex":0.00065560476,"about_ca_topic_score_gemma":0.0009847414,"teacher_disagreement_score":0.0015801536,"about_ca_system_score_codex":0.00009188772,"about_ca_system_score_gemma":0.00008688223,"threshold_uncertainty_score":0.0052860975},"labels":[],"label_agreement":null},{"id":"W2081372128","doi":"10.1128/jcm.03552-13","title":"Head-to-Head Comparison of Second-Generation Nucleic Acid Amplification Tests for Detection of Chlamydia trachomatis and Neisseria gonorrhoeae on Urine Samples from Female Subjects and Self-Collected Vaginal Swabs","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Memorial University of Newfoundland; St. John’s Health Sciences Centre; Dalhousie University; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec; Queen Elizabeth II Health Sciences Centre; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"U.S. Food and Drug Administration","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Nucleic Acid Amplification Tests; Chlamydiales; Chlamydiaceae; Urine; Biology; Neisseria; Chlamydia; Roche Diagnostics; Virology; Microbiology; Medicine; Internal medicine; Bacteria; Immunology","score_opus":0.08615114019169853,"score_gpt":0.4021150572007549,"score_spread":0.31596391700905635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081372128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99743843,0.00069236103,0.000705819,0.000020624133,0.00005702249,0.00005279601,0.0002217375,0.00003124712,0.00077985827],"genre_scores_gemma":[0.9980197,0.0002020605,0.00065404514,0.00009402719,0.000041674244,0.000030168103,0.0005845923,0.000009822707,0.00036397713],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99430805,0.0025050724,0.00026360623,0.0010342445,0.0015560208,0.00033296394],"domain_scores_gemma":[0.9895774,0.0065766154,0.00093767984,0.0006352139,0.0015665764,0.00070642657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0051888637,0.00088725233,0.00070625346,0.0012398803,0.00030687908,0.00075110554,0.00056414,0.001038966,0.0012013236],"category_scores_gemma":[0.009425349,0.0005154924,0.001121694,0.00058852154,0.00082077016,0.0006269236,0.00056821725,0.0005511138,0.000780989],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023027124,0.0005803895,0.9209206,0.00031673565,0.0018031194,0.00026959207,0.00063344993,0.00059316907,0.019720573,0.00008481198,0.0004992836,0.031551063],"study_design_scores_gemma":[0.0004034617,0.014507738,0.97203684,0.000024779192,0.00045603912,0.0006880776,0.00023523545,0.0015990176,0.009309636,0.00005445782,0.00064095954,0.00004375383],"about_ca_topic_score_codex":0.0023262037,"about_ca_topic_score_gemma":0.0043801465,"teacher_disagreement_score":0.0051888637,"about_ca_system_score_codex":0.0005350936,"about_ca_system_score_gemma":0.0003810508,"threshold_uncertainty_score":0.02744168},"labels":[],"label_agreement":null},{"id":"W2081502785","doi":"10.1128/jcm.00691-14","title":"Profiling of <i>rpoB</i> Mutations and MICs for Rifampin and Rifabutin in Mycobacterium tuberculosis","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"rpoB; Biology; Rifabutin; Mycobacterium tuberculosis; Microbiology; Genetics; Sanger sequencing; Virology; Tuberculosis; Mutation; Gene; Antibiotics; Medicine; Clarithromycin","score_opus":0.050158115603866814,"score_gpt":0.4070448007017362,"score_spread":0.3568866850978694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081502785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99875474,0.00031055723,0.00026135085,0.00002746486,0.0000026999232,0.000010703841,0.00037934107,0.000015258836,0.00023785623],"genre_scores_gemma":[0.99773043,0.00016704327,0.0009713298,0.0000353226,0.0000054679367,0.000013341731,0.000864465,0.0000106136595,0.00020197382],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99975544,0.00005423422,0.000028210607,0.0000611713,0.0000664818,0.00003438616],"domain_scores_gemma":[0.999655,0.00009960823,0.000111944064,0.00002455963,0.0000641003,0.000044855693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018180547,0.00022370712,0.00034412445,0.00054120086,0.00018203793,0.0003554569,0.00012804408,0.00033139423,0.0003466835],"category_scores_gemma":[0.00066565024,0.00013774182,0.00018558126,0.0005212533,0.00014306452,0.00012358227,0.00011337223,0.00023832599,0.00026625517],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031136116,0.00007991728,0.047843836,0.00006588917,0.000020605396,0.00035658336,0.00022577794,0.00023605362,0.94568765,0.000018860863,0.000108091364,0.0050453073],"study_design_scores_gemma":[0.000022787226,0.00073958386,0.7412893,0.000036818816,0.00009083175,0.0034079389,0.0005631206,0.002345953,0.24947172,0.00006477946,0.0019442365,0.000023062981],"about_ca_topic_score_codex":0.00088296167,"about_ca_topic_score_gemma":0.0008935338,"teacher_disagreement_score":0.00088296167,"about_ca_system_score_codex":0.00013841699,"about_ca_system_score_gemma":0.000068569636,"threshold_uncertainty_score":0.0017557144},"labels":[],"label_agreement":null},{"id":"W2081835782","doi":"10.1128/jcm.39.10.3481-3485.2001","title":"Development of a Canadian Standardized Protocol for Subtyping Methicillin-Resistant <i>Staphylococcus aureus</i> Using Pulsed-Field Gel Electrophoresis","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture Food and Rural Development; Sunnybrook Health Science Centre; St. Boniface Hospital; Public Health Agency of Canada; Institut National de Santé Publique du Québec; Health Canada","funders":"","keywords":"Pulsed-field gel electrophoresis; Subtyping; Protocol (science); Fingerprint (computing); Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Gel electrophoresis; Micrococcaceae; Biology; Microbiology; Computer science; Medicine; Artificial intelligence; Bacteria; Genetics; Pathology; Genotype","score_opus":0.09420988848563122,"score_gpt":0.39745686372090494,"score_spread":0.3032469752352737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081835782","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17738372,0.0029641008,0.6999787,0.0015268342,0.0007077433,0.05597215,0.012720889,0.004331456,0.044414345],"genre_scores_gemma":[0.05803194,0.0024275389,0.8969959,0.00037217324,0.000048412458,0.014698521,0.012372439,0.0004544316,0.014598692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98922753,0.0019808693,0.0012248877,0.0008769423,0.005932286,0.0007573748],"domain_scores_gemma":[0.9861304,0.0007234995,0.0006037897,0.001391057,0.010656653,0.0004945749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009705332,0.0011089884,0.0010666151,0.0057320534,0.003147846,0.0016806769,0.0033304526,0.00074895134,0.004770099],"category_scores_gemma":[0.010736996,0.0012396754,0.00075869606,0.0039646965,0.0012347696,0.00064702996,0.0017278345,0.0014512263,0.0027055007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062507356,0.0008716832,0.012956366,0.001104114,0.00009744738,0.0007486954,0.0020458759,0.0032474315,0.7678034,0.0041573765,0.017624171,0.18871835],"study_design_scores_gemma":[0.00037243697,0.0030989938,0.097619444,0.00079731253,0.00028768502,0.0024187174,0.002383843,0.011197895,0.5365418,0.0014919651,0.34310153,0.00068836147],"about_ca_topic_score_codex":0.43597078,"about_ca_topic_score_gemma":0.644218,"teacher_disagreement_score":0.43597078,"about_ca_system_score_codex":0.007206625,"about_ca_system_score_gemma":0.031929057,"threshold_uncertainty_score":0.8668663},"labels":[],"label_agreement":null},{"id":"W2082153498","doi":"10.1128/jcm.02211-05","title":"Concurrent Analysis of Nose and Groin Swab Specimens by the IDI-MRSA PCR Assay Is Comparable to Analysis by Individual-Specimen PCR and Routine Culture Assays for Detection of Colonization by Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Biology; Polymerase chain reaction; Nose; Real-time polymerase chain reaction; Virology; Gene; Genetics","score_opus":0.02976735814485159,"score_gpt":0.3428532607872387,"score_spread":0.3130859026423871,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082153498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9700485,0.0016146887,0.021645019,0.00013659966,0.000051047413,0.0005790062,0.0007710411,0.00047501852,0.0046790903],"genre_scores_gemma":[0.9540994,0.00077395956,0.04145981,0.0001495873,0.000051938023,0.00030096874,0.001190045,0.0000778468,0.0018963369],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975128,0.0005559128,0.00020225799,0.00058573583,0.0009518981,0.00019135364],"domain_scores_gemma":[0.9969502,0.000848831,0.0006131982,0.00032520326,0.0009740707,0.0002884314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018546184,0.0005241118,0.0010569058,0.0009153656,0.00029251596,0.0007331504,0.00044140543,0.00027428727,0.0019451502],"category_scores_gemma":[0.0047186646,0.00036761686,0.0003232019,0.0005871167,0.00050148513,0.00027655918,0.0003823387,0.00038999587,0.00077137223],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020280797,0.00041514458,0.53028554,0.0005089626,0.00017887815,0.0008225179,0.0007869439,0.00037556476,0.3978491,0.00011253734,0.0006572169,0.065979436],"study_design_scores_gemma":[0.00012905172,0.0026719274,0.8072826,0.000098676195,0.00019416572,0.008134787,0.0005707229,0.0036753428,0.17091447,0.000073969,0.006194347,0.000060048576],"about_ca_topic_score_codex":0.005977332,"about_ca_topic_score_gemma":0.015463285,"teacher_disagreement_score":0.005977332,"about_ca_system_score_codex":0.00044069593,"about_ca_system_score_gemma":0.00071077805,"threshold_uncertainty_score":0.011885107},"labels":[],"label_agreement":null},{"id":"W2082400113","doi":"10.1128/jcm.00556-09","title":"Cost Analysis of Multiplex PCR Testing for Diagnosing Respiratory Virus Infections","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Multiplex; Multiplex polymerase chain reaction; Polymerase chain reaction; Biology; Bioinformatics","score_opus":0.3340574516734226,"score_gpt":0.5318899132443174,"score_spread":0.19783246157089485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082400113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9606228,0.0013713698,0.034339152,0.00081430626,0.00004119032,0.00027700473,0.00057440996,0.0000770129,0.0018826596],"genre_scores_gemma":[0.99035233,0.00028067484,0.00875655,0.000061736035,0.000012737316,0.000115557865,0.00021899749,0.000007040522,0.00019426894],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.99494404,0.0039437674,0.00013198046,0.00023882715,0.0004619346,0.00027941327],"domain_scores_gemma":[0.9627369,0.03369799,0.0017095327,0.00042542335,0.00096034154,0.00046967698],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008473693,0.0011884747,0.0011694129,0.002037087,0.00035980163,0.0011477104,0.0010569768,0.0007552573,0.0014343917],"category_scores_gemma":[0.02135529,0.0006858596,0.0019746376,0.0014978168,0.00045047468,0.0012446019,0.00051198504,0.0006358572,0.000081515595],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022028524,0.00037130262,0.02856099,0.000116744064,0.00034781452,0.00012360264,0.000038607337,0.946607,0.00036377303,0.002332936,0.00036302843,0.018571317],"study_design_scores_gemma":[0.0000870044,0.00055260706,0.0040302444,0.000013854112,0.00013125925,0.00005026001,0.000025899926,0.9940282,0.00015721591,0.00079806,0.000109591754,0.000015877244],"about_ca_topic_score_codex":0.02121364,"about_ca_topic_score_gemma":0.010070897,"teacher_disagreement_score":0.02121364,"about_ca_system_score_codex":0.005538911,"about_ca_system_score_gemma":0.0032539074,"threshold_uncertainty_score":0.044813693},"labels":[],"label_agreement":null},{"id":"W2082487934","doi":"10.1128/jcm.00168-12","title":"Evaluation of Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat Genotyping as Performed in Laboratories in Canada, France, and the United States","year":2012,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Genotyping; Variable number tandem repeat; Tandem repeat; Biology; Genetics; Medicine; Computational biology; Virology; Genotype; Genome","score_opus":0.04510692003715524,"score_gpt":0.3660014138244596,"score_spread":0.3208944937873044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082487934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8290988,0.004148515,0.0059708343,0.1101658,0.0024602718,0.00028153445,0.00060885574,0.00018507183,0.047080293],"genre_scores_gemma":[0.98326427,0.0006657106,0.0016388266,0.011562967,0.0010094582,0.000025204094,0.00012515025,0.000021006137,0.00168744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9868868,0.0065952884,0.00088715163,0.0010731219,0.0035339259,0.001023649],"domain_scores_gemma":[0.9817007,0.007392057,0.002195552,0.0010516512,0.006506124,0.0011538849],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0041041994,0.00039540458,0.0004942912,0.0009214538,0.0014640752,0.0018634754,0.001142812,0.0037327418,0.000972986],"category_scores_gemma":[0.02527007,0.00021259527,0.00020637957,0.0012768443,0.0021249065,0.0009178962,0.00030192695,0.0020151034,0.0006218665],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011598113,0.00049871154,0.7883491,0.00034686326,0.000104592866,0.079390414,0.0056893877,0.0008440928,0.014512293,0.003397146,0.038547534,0.067160055],"study_design_scores_gemma":[0.00017192548,0.0039038102,0.6226064,0.00057911687,0.00020671134,0.23405395,0.008037137,0.012205127,0.02130395,0.0028139872,0.093939826,0.00017810083],"about_ca_topic_score_codex":0.04623944,"about_ca_topic_score_gemma":0.050389763,"teacher_disagreement_score":0.04623944,"about_ca_system_score_codex":0.005502789,"about_ca_system_score_gemma":0.0022627464,"threshold_uncertainty_score":0.09194058},"labels":[],"label_agreement":null},{"id":"W2082508094","doi":"10.1128/jcm.00429-06","title":"Identification of Virulence Genes Linked with Diarrhea Due to Atypical Enteropathogenic <i>Escherichia coli</i> by DNA Microarray Analysis and PCR","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":145,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute; Université de Montréal","funders":"","keywords":"Virulence; Biology; Diarrhea; Gene; Enteropathogenic Escherichia coli; Microbiology; Microarray; STX2; Escherichia coli; Polymerase chain reaction; DNA microarray; Virology; Genetics; Shiga toxin; Gene expression; Medicine","score_opus":0.011300367999698633,"score_gpt":0.29952527390875594,"score_spread":0.2882249059090573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082508094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987509,0.0002273199,0.00066482625,0.000014293045,0.0000029504704,0.0000063576517,0.00019565558,0.0000044840153,0.0001332865],"genre_scores_gemma":[0.99710387,0.00031323257,0.0019331921,0.000025740226,0.0000069583,0.000020702548,0.0004149867,0.000002676551,0.00017862523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998053,0.000032268206,0.000018224307,0.00007313028,0.00003558234,0.00003549337],"domain_scores_gemma":[0.99969447,0.00010653641,0.00011809995,0.000016456404,0.000036698566,0.000027817856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001712899,0.00020262749,0.00018900404,0.00043704978,0.00009882546,0.00022268646,0.0001024665,0.00020238264,0.0007919608],"category_scores_gemma":[0.00051457755,0.00014412293,0.0001461842,0.00038935067,0.00020904967,0.00012442678,0.000092162125,0.00016413788,0.000107588756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050797727,0.000054369502,0.47579125,0.00017445876,0.000041700063,0.0006347089,0.0002570504,0.00023100892,0.5152946,0.000048958438,0.00008580272,0.006878176],"study_design_scores_gemma":[0.000010799106,0.0003145772,0.9685989,0.000017711876,0.000056266326,0.00224225,0.00040949776,0.0008224758,0.026715431,0.000040041745,0.0007646315,0.000007558255],"about_ca_topic_score_codex":0.0014995893,"about_ca_topic_score_gemma":0.0013783271,"teacher_disagreement_score":0.0014995893,"about_ca_system_score_codex":0.00015097974,"about_ca_system_score_gemma":0.00010918733,"threshold_uncertainty_score":0.0029817224},"labels":[],"label_agreement":null},{"id":"W2085022407","doi":"10.1128/jcm.01924-07","title":"Evaluation of Melting Curve Analysis for Screening the Most Prevalent Mutations in Topoisomerase Genes from <i>Streptococcus pneumoniae</i>","year":2008,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Streptococcus pneumoniae; Melting curve analysis; Levofloxacin; Microbiology; Point mutation; Streptococcaceae; Topoisomerase IV; Polymerase chain reaction; Biology; Gene; Antibacterial agent; Streptococcus; Virology; Mutation; DNA gyrase; Genetics; Antibiotics; Bacteria; Escherichia coli","score_opus":0.131270581351972,"score_gpt":0.41663792436672764,"score_spread":0.28536734301475564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085022407","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006676357,0.0046579884,0.0012632982,0.9494969,0.03379092,0.00010175942,0.00022234506,0.00021824257,0.0035721564],"genre_scores_gemma":[0.040230803,0.0047802962,0.003725379,0.89137053,0.047894113,0.00020271492,0.00022323364,0.00010962087,0.01146325],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99516535,0.0017905057,0.0009995943,0.0004047286,0.0011977791,0.00044198756],"domain_scores_gemma":[0.98918545,0.005671463,0.0006660519,0.0003961181,0.0033779617,0.0007029927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030005646,0.0011672715,0.0013818555,0.0010956529,0.0016364978,0.0015815189,0.0017883453,0.024752984,0.0034343302],"category_scores_gemma":[0.026024703,0.0008127239,0.0010122586,0.00077630446,0.002040444,0.0020214191,0.0007691416,0.017377097,0.005717034],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097142323,0.0002912168,0.008617516,0.00040329245,0.00004763932,0.022601573,0.0005915822,0.0002972983,0.007138978,0.0012611047,0.92160946,0.03616885],"study_design_scores_gemma":[0.0006508075,0.0021315766,0.017542914,0.0009800849,0.00025492092,0.10673264,0.0017378617,0.0036092089,0.016804138,0.0070287813,0.8421358,0.00039131826],"about_ca_topic_score_codex":0.0025284258,"about_ca_topic_score_gemma":0.0024444063,"teacher_disagreement_score":0.024752984,"about_ca_system_score_codex":0.003013221,"about_ca_system_score_gemma":0.0010716624,"threshold_uncertainty_score":0.021862566},"labels":[],"label_agreement":null},{"id":"W2085749113","doi":"10.1128/jcm.02359-10","title":"Modified Multiple-Locus Variable-Number Tandem-Repeat Analysis for Rapid Identification and Typing of Clostridium difficile during Institutional Outbreaks","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Clostridium difficile; Variable number tandem repeat; Typing; Outbreak; Multiple Loci VNTR Analysis; Tandem repeat; Biology; Locus (genetics); Microbiology; Clostridiaceae; Virology; Genetics; Gene; Toxin; Genotype; Genome; Antibiotics","score_opus":0.08811446915194708,"score_gpt":0.3592778729179676,"score_spread":0.2711634037660205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085749113","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774434,0.0014518779,0.019328224,0.000078705925,0.000041053096,0.0001626952,0.00043591842,0.00016902079,0.00088905095],"genre_scores_gemma":[0.9481832,0.00034376202,0.050430264,0.000046832847,0.00001762934,0.00010648058,0.00041948239,0.00002132593,0.00043107037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986853,0.00060316076,0.000072270755,0.00016437042,0.00039156503,0.0000833351],"domain_scores_gemma":[0.99889106,0.00033627747,0.0002909297,0.0001039573,0.00026592516,0.00011187302],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011078248,0.00024601835,0.0002655053,0.0012490323,0.00020737057,0.00039172778,0.00050278916,0.00031444666,0.00050337036],"category_scores_gemma":[0.003005047,0.0001597027,0.00020534026,0.0005163653,0.00022649895,0.00026432428,0.0002978051,0.0003699254,0.00025979627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014987822,0.000421115,0.22803225,0.00030112802,0.00013612738,0.0005253356,0.0003776363,0.0013216594,0.6108705,0.00027292015,0.0007861438,0.15545647],"study_design_scores_gemma":[0.00020402667,0.005543688,0.60096055,0.00017235983,0.00033154004,0.008357606,0.0003466114,0.027971994,0.34865588,0.00034496252,0.006922576,0.00018820724],"about_ca_topic_score_codex":0.0015914941,"about_ca_topic_score_gemma":0.0035657352,"teacher_disagreement_score":0.0015914941,"about_ca_system_score_codex":0.0002572575,"about_ca_system_score_gemma":0.00035009414,"threshold_uncertainty_score":0.0058588386},"labels":[],"label_agreement":null},{"id":"W2086081694","doi":"10.1128/jcm.05880-11","title":"Validation of the MycAssay Pneumocystis Kit for Detection of Pneumocystis jirovecii in Bronchoalveolar Lavage Specimens by Comparison to a Laboratory Standard of Direct Immunofluorescence Microscopy, Real-Time PCR, or Conventional PCR","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Public Health Ontario","funders":"Alere","keywords":"Pneumocystis jirovecii; Bronchoalveolar lavage; Pneumocystis pneumonia; Pneumocystis carinii; Pneumocystosis; Biology; Positive predicative value; Virology; Polymerase chain reaction; Gold standard (test); Real-time polymerase chain reaction; Molecular biology; Microbiology; Predictive value; Medicine; Human immunodeficiency virus (HIV); Lung; Internal medicine","score_opus":0.027899314925638567,"score_gpt":0.3587345960898429,"score_spread":0.33083528116420435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086081694","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9204186,0.0026461044,0.07008287,0.00034943759,0.0002719985,0.00090166996,0.0017272839,0.0007398821,0.0028621324],"genre_scores_gemma":[0.9132686,0.00072695856,0.080740675,0.00034892227,0.000074379954,0.00078929495,0.0030846645,0.00009721154,0.00086937455],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9809141,0.006324194,0.0026782854,0.00317173,0.006326248,0.000585382],"domain_scores_gemma":[0.98900884,0.004773027,0.0014756079,0.0011917595,0.003203372,0.00034742642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010298099,0.0011295209,0.000667469,0.0018076943,0.00050189305,0.0013770204,0.001364208,0.0016225916,0.0007197034],"category_scores_gemma":[0.016836576,0.00074544514,0.000536575,0.00091545895,0.0013142801,0.0007241781,0.00089023303,0.00085722655,0.000936621],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068341097,0.00042374627,0.07924592,0.00037843682,0.00011878655,0.00020247398,0.00049653224,0.0008484549,0.9036392,0.00025444434,0.0004435422,0.013265051],"study_design_scores_gemma":[0.000094119096,0.0033538626,0.15014723,0.00023245013,0.00022739048,0.0027183315,0.00028866876,0.018423956,0.8196362,0.00017065585,0.004614313,0.000092834256],"about_ca_topic_score_codex":0.0014345086,"about_ca_topic_score_gemma":0.0026589115,"teacher_disagreement_score":0.010298099,"about_ca_system_score_codex":0.0005537843,"about_ca_system_score_gemma":0.00048888964,"threshold_uncertainty_score":0.054462254},"labels":[],"label_agreement":null},{"id":"W2086111078","doi":"10.1128/jcm.01075-07","title":"Genotypic and Phenotypic Analysis of <i>Enterobacter sakazakii</i> Strains from an Outbreak Resulting in Fatalities in a Neonatal Intensive Care Unit in France","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Centre National de la Recherche Scientifique; Trent University; Nottingham Trent University","keywords":"Outbreak; Enterobacter; Genotype; Cronobacter sakazakii; Microbiology; Neonatal intensive care unit; 16S ribosomal RNA; Biology; Enterobacter cloacae; Virology; Enterobacteriaceae; Infant formula; Medicine; Bacteria; Gene; Pediatrics; Food science; Genetics; Escherichia coli","score_opus":0.03402250686125851,"score_gpt":0.3757337987324907,"score_spread":0.34171129187123217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086111078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99927765,0.00011728395,0.0001367297,0.000037154845,0.000006577361,0.000017118626,0.00013568506,0.0000036853487,0.00026818312],"genre_scores_gemma":[0.99800295,0.00020816713,0.00060195185,0.0000982577,0.000014993308,0.000018268925,0.0008105967,0.0000068615045,0.00023794187],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992525,0.00014108806,0.00010151373,0.00013278073,0.00021273838,0.00015935313],"domain_scores_gemma":[0.999212,0.00012577057,0.00021926955,0.00003861618,0.0002554752,0.00014876829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005905919,0.0005476369,0.00044459602,0.0007598675,0.00048130276,0.0008146274,0.00038026355,0.00053348456,0.0002836926],"category_scores_gemma":[0.0015835087,0.0002600037,0.0005388758,0.00056854176,0.00031071773,0.0002458643,0.00039521596,0.0003675384,0.00020718103],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008738525,0.00032207937,0.79417783,0.00015297362,0.00016845627,0.009326321,0.0025347786,0.0008877008,0.1762386,0.000074448224,0.00056559936,0.014677402],"study_design_scores_gemma":[0.000027158923,0.0008271712,0.9712435,0.000032770946,0.000086638276,0.008070906,0.0023345347,0.00053614005,0.015288606,0.000026927559,0.001497767,0.000027933205],"about_ca_topic_score_codex":0.011860238,"about_ca_topic_score_gemma":0.008417207,"teacher_disagreement_score":0.011860238,"about_ca_system_score_codex":0.0007502003,"about_ca_system_score_gemma":0.0004267608,"threshold_uncertainty_score":0.023582458},"labels":[],"label_agreement":null},{"id":"W2086506361","doi":"10.1128/jcm.39.3.1073-1078.2001","title":"Phenotypic Methods for Determining Genomovar Status of the <i>Burkholderia cepacia</i> Complex","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Burkholderia cepacia complex; Burkholderia; Biology; Microbiology; Bacteria; Genetics","score_opus":0.15912326050989153,"score_gpt":0.5168233306984232,"score_spread":0.35770007018853167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086506361","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72450805,0.014751881,0.2311257,0.0008393293,0.0003911511,0.0016424144,0.007275698,0.0010664287,0.018399335],"genre_scores_gemma":[0.6724107,0.010216464,0.3066699,0.0002778972,0.00013175509,0.0012441163,0.004823491,0.00010536437,0.0041202265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99736613,0.000898443,0.00032498047,0.00032832054,0.00092806434,0.00015406047],"domain_scores_gemma":[0.9974239,0.0008157335,0.0006535755,0.00023880081,0.00063748023,0.00023058189],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012879597,0.0007011079,0.00051697815,0.003953488,0.00049292884,0.0007825184,0.0006521042,0.000634311,0.0009771371],"category_scores_gemma":[0.003208381,0.00030515977,0.0002931461,0.001651798,0.00045275674,0.0005043975,0.00081983086,0.00080066663,0.0011274591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022988976,0.0002043483,0.02772248,0.00043323782,0.000042487667,0.00019331704,0.0002937187,0.00020188319,0.9233779,0.00035529648,0.0004028771,0.04654262],"study_design_scores_gemma":[0.00006708202,0.0021058384,0.17909841,0.00023822507,0.00031024183,0.0034008133,0.0015277675,0.006376257,0.79269636,0.0009223383,0.013114148,0.00014255881],"about_ca_topic_score_codex":0.0012060611,"about_ca_topic_score_gemma":0.002159927,"teacher_disagreement_score":0.003953488,"about_ca_system_score_codex":0.00021010054,"about_ca_system_score_gemma":0.0002746099,"threshold_uncertainty_score":0.0068114996},"labels":[],"label_agreement":null},{"id":"W2087413716","doi":"10.1128/jcm.03234-12","title":"Evaluation of Epstein-Barr Virus, Human Herpesvirus 6 (HHV-6), and HHV-8 Antiviral Drug Susceptibilities by Use of Real-Time-PCR-Based Assays","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Québec Consortium for Drug Discovery","keywords":"Virology; Virus; Antiviral drug; Human herpesvirus 6; Epstein–Barr virus; Herpesviridae; Biology; Nucleoside; Cell culture; Alphaherpesvirinae; Human herpesvirus; Lymphoma; Viral disease; Immunology","score_opus":0.053479538984498975,"score_gpt":0.36387257822392405,"score_spread":0.3103930392394251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087413716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8149728,0.013591722,0.1555242,0.0004437097,0.0004912211,0.0027799115,0.004702292,0.0011469825,0.0063471165],"genre_scores_gemma":[0.6415839,0.010109504,0.32971364,0.00044442035,0.0002456629,0.0057850713,0.006243681,0.0001704106,0.0057037473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958146,0.0016600786,0.00056789845,0.00057474826,0.0011524477,0.0002301596],"domain_scores_gemma":[0.9957503,0.0021041757,0.00064221065,0.00028566874,0.001075802,0.0001418427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003534344,0.00170566,0.0012658156,0.0012836551,0.00039208756,0.00089373725,0.00091636175,0.00078974623,0.002115343],"category_scores_gemma":[0.0036560579,0.0005843939,0.0007217134,0.0011102305,0.0008077918,0.0007829384,0.00046175593,0.0012878402,0.00092178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004913374,0.00048040505,0.0022049109,0.00036058,0.000040331914,0.000048553906,0.0001992102,0.0005564103,0.9840522,0.00024906595,0.00013981957,0.011177175],"study_design_scores_gemma":[0.000034376233,0.001753014,0.0020470168,0.000025965872,0.000065284476,0.0001240705,0.000104274564,0.0026026936,0.99149317,0.0001341362,0.0015932828,0.000022793118],"about_ca_topic_score_codex":0.00029774065,"about_ca_topic_score_gemma":0.0006069113,"teacher_disagreement_score":0.003534344,"about_ca_system_score_codex":0.00038433808,"about_ca_system_score_gemma":0.00052843936,"threshold_uncertainty_score":0.018691659},"labels":[],"label_agreement":null},{"id":"W2087577359","doi":"10.1128/jcm.02164-14","title":"Clinical Laboratory Response to a Mock Outbreak of Invasive Bacterial Infections: a Preparedness Study","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Centers for Disease Control and Prevention","keywords":"Outbreak; Virulence; Biology; Genome; Whole genome sequencing; Transcriptome; Transmission (telecommunications); Genetics; Computational biology; Gene; Virology; Gene expression","score_opus":0.05052181363337676,"score_gpt":0.43090516123468253,"score_spread":0.38038334760130577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087577359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979163,0.000025419997,0.0008719872,0.0001483064,0.00001516323,0.00052679144,0.000054793523,0.000019660629,0.00042162166],"genre_scores_gemma":[0.995672,0.000051762672,0.0027030136,0.00036983783,0.00004019978,0.00068913435,0.00020976861,0.000006054795,0.000258299],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99653494,0.0022143284,0.00020690587,0.00038068625,0.0003796883,0.00028338836],"domain_scores_gemma":[0.9937581,0.0020953945,0.0011599857,0.0010653666,0.0009283248,0.0009929182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005327289,0.0006984543,0.000545008,0.00029175868,0.0007259121,0.00079486065,0.00069328723,0.001509816,0.0010686741],"category_scores_gemma":[0.012372382,0.00031870764,0.00046653446,0.00020519953,0.0007059096,0.0009060951,0.0014313455,0.0009862004,0.00031060044],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.04423666,0.10034901,0.49775374,0.0010887809,0.0006446871,0.007523777,0.009451944,0.015288746,0.22918351,0.0017791777,0.004812752,0.08788724],"study_design_scores_gemma":[0.0023284978,0.4562336,0.44045618,0.00012566247,0.00023149923,0.0027868776,0.010940067,0.01839351,0.05892051,0.0014825357,0.0078061963,0.00029487582],"about_ca_topic_score_codex":0.00063531933,"about_ca_topic_score_gemma":0.00078263885,"teacher_disagreement_score":0.005327289,"about_ca_system_score_codex":0.00082560047,"about_ca_system_score_gemma":0.00095647067,"threshold_uncertainty_score":0.028173685},"labels":[],"label_agreement":null},{"id":"W2088563196","doi":"10.1128/jcm.01465-13","title":"Molecular Characterization of Reptile Pathogens Currently Known as Members of the Chrysosporium Anamorph of Nannizziopsis vriesii Complex and Relationship with Some Human-Associated Isolates","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":182,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; San Diego Zoo Institute for Conservation Research; College of Medicine, University of Florida; University of Florida","keywords":"Biology; Chrysosporium; Internal transcribed spacer; Zoology; Species complex; Clade; Ribosomal DNA; Genus; Ribosomal RNA; Phylogenetics; Botany; Genetics; Phylogenetic tree; Gene","score_opus":0.02325084083664038,"score_gpt":0.2843219865844034,"score_spread":0.261071145747763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088563196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981201,0.00053008157,0.00027848993,0.000024177458,0.000005530779,0.000034289504,0.00042453848,0.0000054788957,0.0005772839],"genre_scores_gemma":[0.9955296,0.0005441534,0.0010168198,0.00002544986,0.000009623063,0.00002153431,0.0023173587,0.0000033275705,0.0005321819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99976474,0.000023483311,0.000021588457,0.000071715236,0.00006748662,0.00005101703],"domain_scores_gemma":[0.99973565,0.00003585327,0.00009710768,0.000016662003,0.000063735744,0.000050930175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011697543,0.0003237456,0.00019421279,0.00090994855,0.00024480143,0.00038579814,0.00020277011,0.00027567806,0.0005449161],"category_scores_gemma":[0.00032704693,0.00009459891,0.00021278465,0.0006411035,0.00018121512,0.00015086748,0.0002096601,0.00018619504,0.00018104656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026549134,0.00010235916,0.28407997,0.00021434981,0.00006808849,0.001173943,0.0009454206,0.00017834346,0.6980383,0.00011580465,0.0001721904,0.0146456845],"study_design_scores_gemma":[0.000009604772,0.00023377956,0.9694938,0.00002030106,0.00005088712,0.002601108,0.000907627,0.00046034387,0.021942785,0.000039109567,0.004231482,0.000009212371],"about_ca_topic_score_codex":0.0049797855,"about_ca_topic_score_gemma":0.00597361,"teacher_disagreement_score":0.0049797855,"about_ca_system_score_codex":0.00024136185,"about_ca_system_score_gemma":0.0001795694,"threshold_uncertainty_score":0.009901583},"labels":[],"label_agreement":null},{"id":"W2088613502","doi":"10.1128/jcm.41.3.1225-1234.2003","title":"Characterization of Monkey Enteropathogenic <i>Escherichia coli</i> (EPEC) and Human Typical and Atypical EPEC Serotype Isolates from Neotropical Nonhuman Primates","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Guelph","funders":"","keywords":"Biology; Virulence; Enteropathogenic Escherichia coli; Diarrhea; Enteritis; Microbiology; Serotype; Feces; Virology; Escherichia coli; Human feces; Macaque; Enterobacteriaceae; Gene; Genetics; Medicine","score_opus":0.0201772814177177,"score_gpt":0.31712864896251475,"score_spread":0.29695136754479706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088613502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994437,0.00014166899,0.00010789045,0.000009148168,0.0000015276464,0.000007941407,0.000072989795,0.0000011581382,0.00021393666],"genre_scores_gemma":[0.99739337,0.0005262014,0.00094771775,0.00004427615,0.000013507417,0.00002377422,0.0006828186,0.0000032034195,0.0003649936],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998487,0.000025417246,0.000014574573,0.00004487474,0.000035934252,0.000030522668],"domain_scores_gemma":[0.99976414,0.000036596062,0.00007184758,0.000027473667,0.000049431903,0.00005046439],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001364777,0.00026337412,0.00021662709,0.00033453267,0.00037116033,0.00028454207,0.00011009482,0.00026918977,0.0005180086],"category_scores_gemma":[0.00049692445,0.00011704495,0.00014019133,0.0002713328,0.0002657672,0.00015832976,0.0002673905,0.00018784883,0.00014433416],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006108836,0.00009618864,0.49291065,0.00015654643,0.00005862474,0.002344405,0.0012578423,0.00018480858,0.48970273,0.000092203816,0.000117053576,0.012468043],"study_design_scores_gemma":[0.000015888405,0.00073393475,0.9602639,0.000028670132,0.00004745361,0.010346388,0.0011738852,0.00034460722,0.023721185,0.00006031615,0.0032544048,0.000009370182],"about_ca_topic_score_codex":0.0013713437,"about_ca_topic_score_gemma":0.0018995301,"teacher_disagreement_score":0.0013713437,"about_ca_system_score_codex":0.000113752976,"about_ca_system_score_gemma":0.0001366763,"threshold_uncertainty_score":0.002726674},"labels":[],"label_agreement":null},{"id":"W2088651787","doi":"10.1128/jcm.03480-14","title":"Multicenter Evaluation of the BD Max Enteric Bacterial Panel PCR Assay for Rapid Detection of Salmonella spp., Shigella spp., Campylobacter spp. (C. jejuni and C. coli), and Shiga Toxin 1 and 2 Genes","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); Calgary Laboratory Services","funders":"bioMérieux","keywords":"Shigella; Salmonella; Campylobacter; Microbiology; Campylobacter jejuni; Biology; Shiga toxin; Feces; Enterobacteriaceae; Virology; Escherichia coli; Bacteria","score_opus":0.13611718341747786,"score_gpt":0.3341337004568109,"score_spread":0.19801651703933304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088651787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99342656,0.00046047632,0.004845726,0.000037983973,0.000021360342,0.00014237886,0.00041437714,0.00005911666,0.0005920118],"genre_scores_gemma":[0.98335016,0.00016146428,0.014632713,0.000067130815,0.000017658056,0.0001876469,0.0012711316,0.00002400806,0.00028799716],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9900351,0.0050425064,0.0007396046,0.0019575083,0.0019894524,0.000235754],"domain_scores_gemma":[0.99187523,0.0023747904,0.0016117365,0.00072101323,0.003079377,0.0003378686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012613809,0.00086306036,0.00044192286,0.0010398825,0.00043609508,0.0005642771,0.000539393,0.0004023412,0.00041289532],"category_scores_gemma":[0.009907685,0.00048804126,0.0004050238,0.0007539418,0.00045759237,0.00043517072,0.00084248703,0.0004486598,0.00021739223],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008877327,0.0017879133,0.7692335,0.00025459778,0.0006245518,0.00029980356,0.0011400424,0.0017397071,0.16260792,0.00023894152,0.0012787124,0.051916968],"study_design_scores_gemma":[0.0007713332,0.022328537,0.8596794,0.00009342433,0.00058200076,0.0027803606,0.00060654455,0.016739326,0.09121699,0.000115003015,0.0049992925,0.00008776504],"about_ca_topic_score_codex":0.001543107,"about_ca_topic_score_gemma":0.0017235071,"teacher_disagreement_score":0.012613809,"about_ca_system_score_codex":0.00043913178,"about_ca_system_score_gemma":0.0006148697,"threshold_uncertainty_score":0.06670898},"labels":[],"label_agreement":null},{"id":"W2088683218","doi":"10.1128/jcm.06437-11","title":"Bordetella holmesii, an Emerging Cause of Septic Arthritis","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Public Health; Public Health Ontario; McMaster University","funders":"","keywords":"Septic arthritis; Bacteremia; Medicine; Pathogen; Microbiology; Arthritis; Opportunistic pathogen; Enterobacteriaceae Infections; Bordetella; Immunology; Biology; Bacteria; Enterobacteriaceae; Antibiotics; Bordetella pertussis","score_opus":0.04759715813283412,"score_gpt":0.36394103669104,"score_spread":0.3163438785582059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088683218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831082,0.008258087,0.0019260127,0.00048432703,0.00024208486,0.000051292718,0.00014153273,0.00006232422,0.00572606],"genre_scores_gemma":[0.9972218,0.0015302736,0.00043670565,0.00017832924,0.000112288006,0.0000029325377,0.0000787093,0.000004598147,0.00043423154],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997408,0.000027260503,0.000047403533,0.000042805765,0.000049372324,0.00009233751],"domain_scores_gemma":[0.9993812,0.00014447382,0.00022535384,0.00003809369,0.000082965445,0.00012789619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016924768,0.0004427166,0.0002741194,0.00052399165,0.0008029413,0.0007989583,0.00023259986,0.0010119616,0.0010763699],"category_scores_gemma":[0.00082226563,0.0002280296,0.00018193848,0.00034043388,0.00046154033,0.00042081924,0.0004893081,0.00060519745,0.00049281796],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005604791,0.00017063988,0.28908384,0.00058203674,0.000045352008,0.6289764,0.0015282965,0.00012785407,0.046021607,0.00042152754,0.0015120731,0.030969901],"study_design_scores_gemma":[0.00004522276,0.000617963,0.12585934,0.00015076512,0.0000709096,0.8522155,0.001500797,0.00016096333,0.011198784,0.00018251367,0.007962824,0.00003439595],"about_ca_topic_score_codex":0.0019543373,"about_ca_topic_score_gemma":0.0021247114,"teacher_disagreement_score":0.0019543373,"about_ca_system_score_codex":0.00026444375,"about_ca_system_score_gemma":0.00031745888,"threshold_uncertainty_score":0.0038858652},"labels":[],"label_agreement":null},{"id":"W2089330470","doi":"10.1128/jcm.05061-11","title":"Leishmania (Viannia) Species Identification on Clinical Samples from Cutaneous Leishmaniasis Patients in Peru: Assessment of a Molecular Stepwise Approach","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Leishmania; Leishmaniasis; Cutaneous leishmaniasis; Biology; Identification (biology); Leishmania major; Virology; Parasite hosting; Immunology; Ecology","score_opus":0.15435157671639033,"score_gpt":0.4128188243614192,"score_spread":0.2584672476450289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089330470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96246266,0.0007183445,0.035286937,0.00029430992,0.000011533385,0.0002996531,0.00009775211,0.00014945016,0.00067931117],"genre_scores_gemma":[0.8733343,0.0005574228,0.12530424,0.0001124002,0.000010182474,0.00017775215,0.00027443815,0.0000110253995,0.00021816941],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99870515,0.0007460637,0.00015005154,0.00014189383,0.00019096944,0.00006590834],"domain_scores_gemma":[0.99845123,0.000809123,0.00023827927,0.00007616648,0.00034870507,0.000076429154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022239643,0.00044244787,0.00039513607,0.0012482319,0.00042288462,0.0007266925,0.0005456775,0.00038631487,0.00044236478],"category_scores_gemma":[0.0046514748,0.0002927071,0.0003667722,0.00047070996,0.00035824155,0.0003951832,0.00061143877,0.0003900048,0.00023361135],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014977078,0.00046452272,0.6809195,0.000462981,0.00016772203,0.0005389905,0.0007717885,0.004952689,0.08040593,0.00042331315,0.0004253993,0.22896944],"study_design_scores_gemma":[0.00042234274,0.009254664,0.6825941,0.0002603984,0.00083638553,0.010953213,0.0018429556,0.19053534,0.097915225,0.001344097,0.0038996248,0.00014156374],"about_ca_topic_score_codex":0.0016375763,"about_ca_topic_score_gemma":0.003371217,"teacher_disagreement_score":0.0022239643,"about_ca_system_score_codex":0.00025416826,"about_ca_system_score_gemma":0.00096072996,"threshold_uncertainty_score":0.011761606},"labels":[],"label_agreement":null},{"id":"W2091569698","doi":"10.1128/jcm.43.5.2041-2046.2005","title":"Development and Evaluation of a Multitarget Real-Time Taqman Reverse Transcription-PCR Assay for Detection of the Severe Acute Respiratory Syndrome-Associated Coronavirus and Surveillance for an Apparently Related Coronavirus Found in Masked Palm Civets","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Commission; York University","keywords":"TaqMan; Virology; Coronavirus; Biology; Reverse transcription polymerase chain reaction; Real-time polymerase chain reaction; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Open reading frame; Primer (cosmetics); Molecular biology; Polymerase chain reaction; Coronavirus disease 2019 (COVID-19); Gene; Medicine; Gene expression; Chemistry; Genetics; Pathology; Peptide sequence; Infectious disease (medical specialty)","score_opus":0.13783160346621393,"score_gpt":0.43282353054478667,"score_spread":0.29499192707857275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091569698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.71886075,0.0025093488,0.27014622,0.00022897603,0.0003250282,0.0026098762,0.0014951639,0.0009646376,0.002860074],"genre_scores_gemma":[0.53104454,0.0012968818,0.45377505,0.00034874157,0.000091380054,0.004303935,0.0040682764,0.0000911056,0.004980133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99611413,0.0007380395,0.0003087255,0.0010398417,0.0014876603,0.00031162496],"domain_scores_gemma":[0.9990403,0.00027205353,0.00011158178,0.000104915096,0.00038042132,0.00009075152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035055603,0.0010019448,0.0009826284,0.0010134035,0.00034342997,0.00063149165,0.0010103321,0.0012279167,0.0006313292],"category_scores_gemma":[0.0021651646,0.0008073975,0.00064546993,0.0007331829,0.0005505038,0.00044487862,0.00036617252,0.0007459707,0.0004991488],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015953417,0.00020044258,0.0037728176,0.000099092074,0.000029338307,0.000056554683,0.00009496442,0.00048634765,0.9869006,0.00013463575,0.00009644141,0.007969171],"study_design_scores_gemma":[0.00026834785,0.0056819213,0.033280417,0.00004638039,0.00033115083,0.0009813857,0.00016221605,0.031528477,0.92014575,0.00023213493,0.007235497,0.00010636278],"about_ca_topic_score_codex":0.0011517463,"about_ca_topic_score_gemma":0.002649296,"teacher_disagreement_score":0.0035055603,"about_ca_system_score_codex":0.00066207716,"about_ca_system_score_gemma":0.00090960664,"threshold_uncertainty_score":0.01853937},"labels":[],"label_agreement":null},{"id":"W2092007410","doi":"10.1128/jcm.02877-12","title":"CHROMagar Orientation Medium Reduces Urine Culture Workload","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Workload; Urine; Turnaround time; Confidence interval; Medicine; Computer science; Internal medicine; Operating system","score_opus":0.027908137136983705,"score_gpt":0.3480904810799566,"score_spread":0.3201823439429729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092007410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9850921,0.0011530315,0.007664733,0.0007895303,0.000082623825,0.00025907965,0.000291415,0.00025620905,0.004411174],"genre_scores_gemma":[0.98172367,0.00065655936,0.015805278,0.00044743664,0.00008853548,0.00011446554,0.00034430364,0.000052500283,0.0007671877],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98992294,0.0040368857,0.0006563448,0.00061278825,0.0042272243,0.00054372073],"domain_scores_gemma":[0.9741992,0.011518271,0.007815486,0.0014143145,0.003819394,0.0012334358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036635222,0.00055636297,0.00045580007,0.0010014285,0.00032871994,0.0016457802,0.00086371566,0.0004274941,0.0014969142],"category_scores_gemma":[0.024473311,0.0001868442,0.0003860713,0.0007912891,0.00048701034,0.0008213835,0.0016959518,0.00044801206,0.00039461078],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039020067,0.0017842035,0.6209111,0.00073006924,0.00027104918,0.00041377335,0.0008741302,0.002924,0.06330848,0.00045317347,0.0034139962,0.30101398],"study_design_scores_gemma":[0.000098271084,0.0068977196,0.8893418,0.00024432992,0.00020690198,0.0008693579,0.0012208824,0.004615296,0.086157866,0.0003524089,0.009900317,0.00009477543],"about_ca_topic_score_codex":0.0062566036,"about_ca_topic_score_gemma":0.008710211,"teacher_disagreement_score":0.0062566036,"about_ca_system_score_codex":0.0012491441,"about_ca_system_score_gemma":0.0026209685,"threshold_uncertainty_score":0.019374788},"labels":[],"label_agreement":null},{"id":"W2092872520","doi":"10.1128/jcm.43.8.4255-4257.2005","title":"Primers for Clinical Detection of <i>Paracoccidioides brasiliensis</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Paracoccidioides brasiliensis; Paracoccidioidomycosis; Paracoccidioides; Biology; Microbiology; genomic DNA; DNA; Virology; Genetics","score_opus":0.09867028871483358,"score_gpt":0.46190352589377115,"score_spread":0.3632332371789376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092872520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6503545,0.0071790256,0.28697273,0.0015860746,0.0014468868,0.0057325363,0.013458363,0.0025287021,0.030741187],"genre_scores_gemma":[0.5308848,0.0024343939,0.4243609,0.0021028859,0.00023649471,0.0047920384,0.01883523,0.00021504256,0.016138254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862623,0.0002605386,0.00013689634,0.00046766692,0.00025201504,0.00025664392],"domain_scores_gemma":[0.99877006,0.0003448292,0.00028907368,0.00009438261,0.0003549548,0.00014670371],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010611437,0.0010527159,0.00082808937,0.0012770054,0.00044699234,0.00040656087,0.0006949966,0.0011886554,0.005482799],"category_scores_gemma":[0.0018170512,0.0006507291,0.00047290965,0.00056484586,0.00059385784,0.00025976656,0.0002625628,0.001102691,0.003014885],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034323407,0.00012737057,0.0061911363,0.00028432888,0.000013488063,0.0004243967,0.00027330423,0.00011417663,0.9701531,0.00067945407,0.0017861065,0.019609865],"study_design_scores_gemma":[0.00044035126,0.0027784554,0.09005059,0.0005753627,0.0002368816,0.011773633,0.0005935392,0.0029107926,0.756016,0.0019877558,0.13251655,0.00012008938],"about_ca_topic_score_codex":0.0014151293,"about_ca_topic_score_gemma":0.0047775726,"teacher_disagreement_score":0.005482799,"about_ca_system_score_codex":0.00044695806,"about_ca_system_score_gemma":0.0010666989,"threshold_uncertainty_score":0.01834178},"labels":[],"label_agreement":null},{"id":"W2092923308","doi":"10.1128/jcm.43.12.5963-5972.2005","title":"Genetic Diversity and Recombination of Porcine Sapoviruses","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Ohio Agricultural Research and Development Center, Ohio State University; National Institutes of Health; McGill University; U.S. Department of Agriculture; Centers for Disease Control and Prevention; Ohio State University","keywords":"Biology; Genetic diversity; Sapovirus; Strain (injury); Genotype; Virology; Genetic variability; Genetic variation; Genetics; Gene; Population","score_opus":0.09487560064871223,"score_gpt":0.41342402463046135,"score_spread":0.3185484239817491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092923308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994605,0.00009456611,0.00014466744,0.000006746058,0.0000020141629,0.000002465466,0.00004198703,0.0000013682737,0.0002455997],"genre_scores_gemma":[0.99908733,0.000072533,0.0002503588,0.000014431203,0.0000047397066,0.000006313323,0.00038916516,0.0000028180639,0.0001721886],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99962616,0.000086263506,0.000028007718,0.00012379442,0.000058770023,0.000077000404],"domain_scores_gemma":[0.99952805,0.0001513302,0.00013494623,0.00004564369,0.00005712708,0.0000829123],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031835536,0.00020564828,0.0001882955,0.0006715655,0.00024355402,0.0004287208,0.00013443566,0.0003102314,0.00044819576],"category_scores_gemma":[0.00060905004,0.0001526792,0.0002982822,0.00050292263,0.0002510046,0.00016962849,0.0002512409,0.00035611814,0.000119269665],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009524309,0.00014216977,0.35893562,0.000104677856,0.00009906703,0.00085869734,0.0018233985,0.0006380718,0.6243113,0.00026236975,0.00012781114,0.011744371],"study_design_scores_gemma":[0.00004062225,0.00084610394,0.97547215,0.000028140435,0.00005548195,0.002911738,0.0009341273,0.0015338426,0.016248854,0.00018999659,0.0017181222,0.00002077815],"about_ca_topic_score_codex":0.0010696902,"about_ca_topic_score_gemma":0.0009424085,"teacher_disagreement_score":0.0010696902,"about_ca_system_score_codex":0.00019120055,"about_ca_system_score_gemma":0.0001383679,"threshold_uncertainty_score":0.0021268725},"labels":[],"label_agreement":null},{"id":"W2094139653","doi":"10.1128/jcm.39.4.1672-1673.2001","title":"<i>Turicella Otitidis</i> as an Unusual Agent Causing a Posterior Auricular Abscess","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal Children's Hospital; Montreal General Hospital","funders":"McGill University Health Centre; McGill University","keywords":"Abscess; Microbiology; Medicine; Biology; Surgery","score_opus":0.03735045324907655,"score_gpt":0.3947324018694651,"score_spread":0.3573819486203886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094139653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742662,0.0046223407,0.0012760006,0.0055996417,0.0005769844,0.00016594348,0.0003807373,0.00023919137,0.012873037],"genre_scores_gemma":[0.9943188,0.0014011905,0.0007065155,0.0013362919,0.0009281327,0.000021185291,0.00016469511,0.000034670644,0.0010886403],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996637,0.000038433725,0.00004854541,0.00007137061,0.000045323024,0.00013274545],"domain_scores_gemma":[0.99896085,0.00036449445,0.00024421205,0.00007145694,0.00008923577,0.0002697021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023967659,0.001595306,0.0008408333,0.0013490005,0.0018464915,0.0012353266,0.0009792732,0.0047363196,0.0024297452],"category_scores_gemma":[0.0019223035,0.00069731066,0.00076690206,0.0009869834,0.0016368118,0.0013339117,0.00074293604,0.0024604355,0.0010097225],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000622588,0.000018253655,0.0058902176,0.000041768773,0.0000053286117,0.99169016,0.00012148157,0.000032686406,0.0012326908,0.00008438594,0.0004203872,0.00040040258],"study_design_scores_gemma":[0.000024044033,0.00012710161,0.01625774,0.00003837655,0.000035607172,0.9794958,0.00034636966,0.00025965227,0.0016383884,0.00011572304,0.001642037,0.000019073654],"about_ca_topic_score_codex":0.0038244724,"about_ca_topic_score_gemma":0.0034820824,"teacher_disagreement_score":0.0047363196,"about_ca_system_score_codex":0.0009390246,"about_ca_system_score_gemma":0.00044170284,"threshold_uncertainty_score":0.008128345},"labels":[],"label_agreement":null},{"id":"W2094317045","doi":"10.1128/jcm.02205-14","title":"Characterization of Multiple Cytomegalovirus Drug Resistance Mutations Detected in a Hematopoietic Stem Cell Transplant Recipient by Recombinant Phenotyping","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Drug resistance; Virology; Recombinant DNA; Biology; Hematopoietic stem cell; Stem cell; Hematopoietic stem cell transplantation; Cytomegalovirus; Haematopoiesis; Immunology; Herpesviridae; Viral disease; Virus; Microbiology; Genetics; Gene","score_opus":0.02849865194159884,"score_gpt":0.3175295881982005,"score_spread":0.28903093625660164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094317045","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978745,0.00012033918,0.0015605302,0.00001740623,0.0000032906792,0.000014753006,0.00019429236,0.000026310488,0.00018859893],"genre_scores_gemma":[0.9975873,0.0001021814,0.0017582441,0.000018036744,0.0000029882221,0.000009150746,0.0003209896,0.00001330333,0.00018775245],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998361,0.000031677668,0.0000192702,0.000040355317,0.000043891887,0.000028667859],"domain_scores_gemma":[0.99977285,0.00008465723,0.000055501467,0.000024951947,0.000023944685,0.000038064667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020955615,0.00027040206,0.0002364643,0.0004481026,0.00011806052,0.0002031558,0.00014635353,0.0002470201,0.00075067056],"category_scores_gemma":[0.00043852587,0.00007219208,0.00022097118,0.00020157687,0.00015228592,0.00011764886,0.00012674936,0.00033381078,0.00020163742],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019597085,0.00007960876,0.018195694,0.00002514359,0.000015571863,0.0006337308,0.00008602163,0.00011620736,0.97761476,0.000045702913,0.000026854907,0.0029646491],"study_design_scores_gemma":[0.000017771994,0.0018423736,0.09806567,0.000008517124,0.000092051996,0.0063484143,0.00017820408,0.001987158,0.890524,0.00007100999,0.0008541039,0.000010730316],"about_ca_topic_score_codex":0.00032906607,"about_ca_topic_score_gemma":0.00018317085,"teacher_disagreement_score":0.00075067056,"about_ca_system_score_codex":0.00007350234,"about_ca_system_score_gemma":0.00006491584,"threshold_uncertainty_score":0.0025112033},"labels":[],"label_agreement":null},{"id":"W2094879924","doi":"10.1128/jcm.02724-12","title":"Diagnostic Accuracy and Reproducibility of WHO-Endorsed Phenotypic Drug Susceptibility Testing Methods for First-Line and Second-Line Antituberculosis Drugs","year":2012,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Regina Qu'Appelle Health Region; McGill University","funders":"","keywords":"Ethambutol; Pyrazinamide; Isoniazid; Medicine; Streptomycin; Tuberculosis; First line; Drug; Reproducibility; Pharmacology; Internal medicine; Pathology; Biology; Antibiotics; Chemistry; Microbiology","score_opus":0.22608510913890592,"score_gpt":0.5196519905939164,"score_spread":0.29356688145501053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094879924","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0013055869,0.9976307,0.00031506154,0.00022461441,0.0000684364,0.000037527352,0.00015317723,0.0000041809185,0.00026057393],"genre_scores_gemma":[0.055806004,0.93971443,0.0032113348,0.0004634907,0.00014333277,0.00012484788,0.00043721154,0.000009888602,0.000089434674],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.9533786,0.023707319,0.010565616,0.003344711,0.008557553,0.00044616414],"domain_scores_gemma":[0.80086696,0.16138822,0.018683512,0.0030003665,0.015648032,0.00041285346],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.051311333,0.0014651498,0.0073542004,0.007741253,0.00027450154,0.0028892062,0.0025318891,0.0018279343,0.0010722056],"category_scores_gemma":[0.16501293,0.001006414,0.007759508,0.0069073993,0.0009394779,0.0019456687,0.0012623852,0.0011937597,0.00021868074],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012645205,0.000054082095,0.021137586,0.44366294,0.051037673,0.00016647587,0.00044080368,0.0008804327,0.0006944593,0.0007179111,0.0030033176,0.47693986],"study_design_scores_gemma":[0.0009780799,0.0011539191,0.094959304,0.4397687,0.38334092,0.0029077926,0.0009375295,0.0019918757,0.0047604297,0.00273535,0.06618421,0.00028199944],"about_ca_topic_score_codex":0.0051956093,"about_ca_topic_score_gemma":0.008194348,"teacher_disagreement_score":0.9486887,"about_ca_system_score_codex":0.0021044111,"about_ca_system_score_gemma":0.00467911,"threshold_uncertainty_score":0.2713635},"labels":[],"label_agreement":null},{"id":"W2095043185","doi":"10.1128/jcm.00405-07","title":"Abilities of APTIMA, AMPLICOR, and ProbeTec Assays To Detect <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> in PreservCyt ThinPrep Liquid-Based Pap Samples","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Neisseriaceae; Virology; Chlamydiales; Chlamydiaceae; Medicine; Microbiology; Biology; Antibiotics","score_opus":0.04483860557229572,"score_gpt":0.36929578753624914,"score_spread":0.3244571819639534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095043185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89308053,0.013439188,0.058273062,0.0009374382,0.00036826782,0.0007250181,0.0040289233,0.0022828158,0.026864834],"genre_scores_gemma":[0.93334365,0.0029239284,0.0545336,0.0007335331,0.00008429917,0.0003922413,0.0026844386,0.0001359318,0.005168421],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99582905,0.001191413,0.00031487696,0.0008207628,0.0014934207,0.00035060247],"domain_scores_gemma":[0.9919612,0.0039189793,0.0009290912,0.00096292305,0.001727779,0.00050005194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0056577804,0.0011241045,0.0006433728,0.0020475814,0.0002598379,0.00096386735,0.00078019156,0.000999865,0.0016999656],"category_scores_gemma":[0.011184463,0.00062578014,0.0005972266,0.00094776804,0.0005892389,0.0009930449,0.0009751586,0.00096209155,0.0017434957],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005720661,0.0010530013,0.28450269,0.00097213447,0.0003527834,0.0004254593,0.0013017191,0.0040136306,0.3853738,0.0010320608,0.00449031,0.31076178],"study_design_scores_gemma":[0.00045708593,0.016790155,0.2868082,0.00032397907,0.0007533504,0.012109641,0.00046565328,0.0518081,0.6020112,0.0015310746,0.026606249,0.00033542214],"about_ca_topic_score_codex":0.0015183663,"about_ca_topic_score_gemma":0.0011469327,"teacher_disagreement_score":0.0056577804,"about_ca_system_score_codex":0.00024168885,"about_ca_system_score_gemma":0.0005660933,"threshold_uncertainty_score":0.029921532},"labels":[],"label_agreement":null},{"id":"W2096144107","doi":"10.1128/jcm.42.6.2411-2418.2004","title":"Development of a Species-Specific Probe for<i>Pythium insidiosum</i>and the Diagnosis of Pythiosis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Pythium; Microbiology; Hybridization probe; Ribosomal DNA; genomic DNA; Intergenic region; Pathogen; Polymerase chain reaction; DNA; Genetics; Genome; Phylogenetics; Botany; Gene","score_opus":0.10500601942311681,"score_gpt":0.3744319738823215,"score_spread":0.2694259544592047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096144107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.71499634,0.0049964357,0.25989074,0.0011415973,0.0005132761,0.0005498284,0.0011514829,0.0013989884,0.015361311],"genre_scores_gemma":[0.68713546,0.0033371968,0.29765713,0.00088985544,0.00013668067,0.00120351,0.0034198533,0.00014988348,0.006070342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992668,0.00014811307,0.00005262587,0.0002828733,0.00009416274,0.00015550504],"domain_scores_gemma":[0.99953747,0.00019428474,0.00004992539,0.000042318105,0.00011659025,0.000059484053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046423802,0.0007726225,0.0005294976,0.000981784,0.00044180153,0.00037624832,0.0007031189,0.001950589,0.0024935852],"category_scores_gemma":[0.00085803925,0.00058110966,0.00037117573,0.00052319636,0.0005580327,0.00052391196,0.00050925335,0.0010401902,0.001212011],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026126369,0.00000859044,0.00013352872,0.00003765054,0.000002115496,0.000058361642,0.000021887181,0.000016265203,0.99819463,0.00006138939,0.000031716183,0.0014076724],"study_design_scores_gemma":[0.000082616825,0.0009042425,0.0182824,0.00010105083,0.00007913656,0.005626614,0.00039360023,0.0047240295,0.9492251,0.0006924603,0.019845877,0.000042901283],"about_ca_topic_score_codex":0.0007477254,"about_ca_topic_score_gemma":0.0009121374,"teacher_disagreement_score":0.0024935852,"about_ca_system_score_codex":0.00033231586,"about_ca_system_score_gemma":0.00029848216,"threshold_uncertainty_score":0.008341908},"labels":[],"label_agreement":null},{"id":"W2096213478","doi":"10.1128/jcm.01984-06","title":"Characterization of the Epidemic European Fusidic Acid-Resistant Impetigo Clone of <i>Staphylococcus aureus</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Statens Serum Institut; LEO Pharma; University of Leeds; York University","keywords":"Fusidic acid; Impetigo; Staphylococcus aureus; Microbiology; Biology; clone (Java method); Staphylococcal infections; Virulence; Virology; Mupirocin; Antibiotic resistance; Penicillin; Antibiotics; Genetics; Gene; Methicillin-resistant Staphylococcus aureus; Bacteria; Immunology","score_opus":0.02948503595324327,"score_gpt":0.3377783617285283,"score_spread":0.30829332577528507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096213478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99637383,0.00018903648,0.0012185836,0.00006560503,0.000014793453,0.00006364925,0.0009582658,0.000014614329,0.0011015591],"genre_scores_gemma":[0.98902434,0.00028558134,0.0042527337,0.00013055828,0.000028641993,0.00004463024,0.005050126,0.000020053369,0.0011633221],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99977535,0.000023419641,0.000031531228,0.000057524663,0.00006658211,0.000045565248],"domain_scores_gemma":[0.9994223,0.00014239605,0.00013926017,0.00008143506,0.00012239045,0.00009226851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015992337,0.00026328175,0.00025433602,0.00061798113,0.0002451588,0.0004963169,0.00028256106,0.0005423493,0.00065213966],"category_scores_gemma":[0.00081076584,0.00014907241,0.00042405733,0.0005320743,0.00020743009,0.00015229912,0.00031639045,0.00044699063,0.0003836164],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019483193,0.00011936125,0.024887564,0.00007091992,0.000018734221,0.001316229,0.00022541874,0.00010558153,0.9665249,0.00012482471,0.00013748318,0.006274125],"study_design_scores_gemma":[0.00005859607,0.0014122146,0.68556744,0.00006813554,0.00009990282,0.026910147,0.0006473885,0.0011772058,0.2752186,0.000100351615,0.008690724,0.00004933588],"about_ca_topic_score_codex":0.0028829488,"about_ca_topic_score_gemma":0.0019772123,"teacher_disagreement_score":0.0028829488,"about_ca_system_score_codex":0.00018979178,"about_ca_system_score_gemma":0.0002041062,"threshold_uncertainty_score":0.0057323575},"labels":[],"label_agreement":null},{"id":"W2096390005","doi":"10.1128/jcm.41.4.1558-1564.2003","title":"Clinical Evaluation of Two Methods for Genotyping Hepatitis C Virus Based on Analysis of the 5′ Noncoding Region","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Genotyping; NS5B; Concordance; Genotype; Virology; Biology; Amplicon; Hepatitis C virus; Hepacivirus; Flaviviridae; Molecular biology; Genetics; Virus; Polymerase chain reaction; Gene","score_opus":0.3239236213791872,"score_gpt":0.5974467826949657,"score_spread":0.2735231613157785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096390005","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98086447,0.0050580357,0.009491458,0.00023689731,0.00014677129,0.000501073,0.00021721014,0.00012590608,0.0033581278],"genre_scores_gemma":[0.9902838,0.00078260555,0.00736282,0.00022889153,0.000059766895,0.00020117115,0.00047105175,0.000029742552,0.00058023795],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98579884,0.006532341,0.001117353,0.0020967408,0.0040371185,0.00041750778],"domain_scores_gemma":[0.9659896,0.020400092,0.0036720356,0.0015616074,0.0067926967,0.0015840533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014631012,0.0009730546,0.000885372,0.0013266911,0.00038290778,0.0010645596,0.0005916587,0.0011650765,0.00067442347],"category_scores_gemma":[0.037966676,0.00047164282,0.00042067707,0.00073148316,0.0008750015,0.00072170823,0.00044320367,0.00088527286,0.00060612365],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.015142576,0.0021538166,0.81088895,0.00044408618,0.00054420694,0.0010783995,0.0009783024,0.0016933795,0.040252995,0.00023254997,0.001197168,0.12539363],"study_design_scores_gemma":[0.0009983052,0.054809056,0.88646215,0.000130737,0.0005529377,0.0069638514,0.00042887518,0.016172612,0.028712729,0.00019462078,0.0044076536,0.00016641528],"about_ca_topic_score_codex":0.0010932268,"about_ca_topic_score_gemma":0.0010442014,"teacher_disagreement_score":0.014631012,"about_ca_system_score_codex":0.0006696519,"about_ca_system_score_gemma":0.00057877257,"threshold_uncertainty_score":0.07737714},"labels":[],"label_agreement":null},{"id":"W2096563165","doi":"10.1128/jcm.00935-13","title":"RECall for Automated Genotypic Tropism Testing","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver","funders":"","keywords":"Tropism; Genotype; Biology; Standardization; Recall; Sequence (biology); Computational biology; Population; Tissue tropism; Virology; Genetics; Computer science; Medicine; Virus; Gene; Psychology","score_opus":0.08786683695152224,"score_gpt":0.3903090793399064,"score_spread":0.30244224238838413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096563165","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.016744202,0.0010535317,0.70958304,0.000489464,0.0003719527,0.0011139505,0.015912395,0.24283507,0.01189638],"genre_scores_gemma":[0.066519514,0.0004650554,0.888337,0.0009086598,0.00022629529,0.0020807663,0.019781144,0.011611721,0.010069824],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9919258,0.0022101277,0.00077566644,0.001774287,0.0028299873,0.00048413992],"domain_scores_gemma":[0.9842742,0.006909387,0.0014274409,0.004056003,0.002928547,0.00040434708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0067864507,0.0024760114,0.0016419207,0.004519138,0.00078198395,0.0027130933,0.0032087653,0.0017028473,0.048489533],"category_scores_gemma":[0.031288862,0.0016377439,0.0013344403,0.0021211677,0.0006399845,0.0021488839,0.0030553902,0.0018590247,0.025804467],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004136688,0.0004061729,0.014509846,0.0014243225,0.00043034874,0.00084985397,0.00058786344,0.004017377,0.10492566,0.009654794,0.18853286,0.6705243],"study_design_scores_gemma":[0.00089417404,0.0009256912,0.028923951,0.0010585639,0.00037595918,0.004639553,0.00043725432,0.13190272,0.32701606,0.017019961,0.48596752,0.0008385873],"about_ca_topic_score_codex":0.0024450005,"about_ca_topic_score_gemma":0.0025824907,"teacher_disagreement_score":0.048489533,"about_ca_system_score_codex":0.0006844175,"about_ca_system_score_gemma":0.0012965692,"threshold_uncertainty_score":0.16221368},"labels":[],"label_agreement":null},{"id":"W2096675722","doi":"10.1128/jcm.43.10.5085-5090.2005","title":"Antibiotic Susceptibilities of <i>Pseudomonas aeruginosa</i> Isolates Derived from Patients with Cystic Fibrosis under Aerobic, Anaerobic, and Biofilm Conditions","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":216,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Pseudomonas aeruginosa; Biofilm; Tobramycin; Microbiology; Antibiotics; Cystic fibrosis; Anaerobic exercise; Colistin; Ciprofloxacin; Multidrug tolerance; Biology; Bacteria; Gentamicin","score_opus":0.019583792091523805,"score_gpt":0.32361890767770213,"score_spread":0.30403511558617835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096675722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998961,0.00045142844,0.00015852402,0.000026409309,0.0000059621634,0.00001662935,0.00013220632,0.000007527177,0.00024037434],"genre_scores_gemma":[0.9984634,0.00027358765,0.0006443425,0.000039490304,0.000012626374,0.00002582702,0.00035869065,0.000005704683,0.00017634606],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926454,0.00017618033,0.000119220604,0.00019934928,0.00016262908,0.00007810517],"domain_scores_gemma":[0.99917006,0.00026603902,0.00019240924,0.00006666833,0.00016286976,0.00014204615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003739029,0.00039557385,0.0005547675,0.0004218714,0.00025089216,0.00040757406,0.00017944103,0.0005186427,0.00090159534],"category_scores_gemma":[0.00204013,0.00017384723,0.00030096708,0.00035810738,0.00028710687,0.00024811606,0.00030780086,0.00046718796,0.0003149624],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031821425,0.00066575943,0.49705958,0.00029558904,0.00018754223,0.0019595614,0.0013721093,0.00057658117,0.46582618,0.00006623406,0.0005220883,0.028286656],"study_design_scores_gemma":[0.00012612689,0.010867579,0.85546607,0.000053245196,0.00026204356,0.017246338,0.0011988878,0.0011584624,0.11093781,0.00008814672,0.0025387998,0.000056432298],"about_ca_topic_score_codex":0.0010404553,"about_ca_topic_score_gemma":0.00066641107,"teacher_disagreement_score":0.0010404553,"about_ca_system_score_codex":0.00021452457,"about_ca_system_score_gemma":0.0001432835,"threshold_uncertainty_score":0.0030161738},"labels":[],"label_agreement":null},{"id":"W2096682515","doi":"10.1128/jcm.00789-07","title":"Evolution of an International External Quality Assurance Model To Support Laboratory Investigation of <i>Streptococcus pneumoniae</i> , Developed for the SIREVA Project in Latin America, from 1993 to 2005","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health","funders":"Instituto Mexicano del Seguro Social","keywords":"Streptococcus pneumoniae; Quality assurance; Latin Americans; Microbiology; Medicine; External quality assessment; Biology; Political science; Pathology","score_opus":0.0972799036016067,"score_gpt":0.4392077174611662,"score_spread":0.3419278138595595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096682515","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16914251,0.0017159574,0.7616096,0.009159435,0.0005484477,0.0048007295,0.0016734345,0.016968915,0.03438094],"genre_scores_gemma":[0.51105535,0.00093517784,0.46874034,0.0025215633,0.00021968968,0.0018282334,0.005661049,0.0008880818,0.008150565],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.97075695,0.012162863,0.0029009704,0.0046848855,0.008054614,0.0014397356],"domain_scores_gemma":[0.9248736,0.009108221,0.009503034,0.009343907,0.04417206,0.002999087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.075482175,0.0013681725,0.0009155575,0.0034200572,0.001320428,0.005695118,0.0049046143,0.0010122167,0.0017943631],"category_scores_gemma":[0.04163997,0.0007607257,0.0009367151,0.0020897943,0.0019093326,0.0036231484,0.0050458545,0.002071431,0.0010752446],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017204136,0.0030821748,0.19088943,0.0009939865,0.00044401648,0.000324954,0.0032236218,0.06337054,0.019527195,0.022801377,0.029359479,0.6642627],"study_design_scores_gemma":[0.0011518577,0.0077804844,0.18178046,0.0019798055,0.00070558616,0.0008884528,0.0022705551,0.5125665,0.06408141,0.013474074,0.21275033,0.00057044177],"about_ca_topic_score_codex":0.025748853,"about_ca_topic_score_gemma":0.01285465,"teacher_disagreement_score":0.075482175,"about_ca_system_score_codex":0.0074309995,"about_ca_system_score_gemma":0.020692779,"threshold_uncertainty_score":0.3991927},"labels":[],"label_agreement":null},{"id":"W2096947029","doi":"10.1128/jcm.43.9.4691-4695.2005","title":"Clinical Utility of Commercial Enzyme Immunoassays during the Inaugural Season of West Nile Virus Activity, Alberta, Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada; Provincial Laboratory of Public Health","funders":"","keywords":"West Nile virus; Virology; Immunoassay; Virus; Biology; Veterinary medicine; Geography; Medicine; Immunology; Antibody","score_opus":0.02579906218293534,"score_gpt":0.35057611188352306,"score_spread":0.32477704970058774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096947029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93449914,0.018290307,0.003630549,0.00093900866,0.00026533293,0.0003763665,0.002935982,0.0006241527,0.038439177],"genre_scores_gemma":[0.99030614,0.0022795051,0.0034873718,0.0002421549,0.000030194446,0.000023857565,0.0008673394,0.000015786538,0.0027476186],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983432,0.0002188586,0.000092165894,0.00016843127,0.0009497894,0.00022758017],"domain_scores_gemma":[0.99752456,0.000273448,0.00022368228,0.000045795776,0.0016408553,0.00029160708],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014994857,0.0007643088,0.00029258625,0.0017781021,0.0008976044,0.0012062375,0.0009855918,0.00036435953,0.0011276439],"category_scores_gemma":[0.0032976733,0.00027252903,0.00015477001,0.0014281009,0.00059884373,0.00019017002,0.00027813992,0.0004254494,0.00038461023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085666106,0.00024198022,0.89350164,0.00020831628,0.00005717722,0.0011050398,0.00091047835,0.00076148985,0.010377558,0.00023294546,0.0058726575,0.08587406],"study_design_scores_gemma":[0.000055664073,0.0003768994,0.9815616,0.00013357868,0.000069370915,0.0012682641,0.0010649816,0.0033066985,0.004841742,0.00007982595,0.007204058,0.0000373166],"about_ca_topic_score_codex":0.88717014,"about_ca_topic_score_gemma":0.9196958,"teacher_disagreement_score":0.112829864,"about_ca_system_score_codex":0.010297988,"about_ca_system_score_gemma":0.007678207,"threshold_uncertainty_score":0.22698861},"labels":[],"label_agreement":null},{"id":"W2096989755","doi":"10.1128/jcm.00593-15","title":"Rapid, Sensitive, and Specific Escherichia coli H Antigen Typing by Matrix-Assisted Laser Desorption Ionization–Time of Flight-Based Peptide Mass Fingerprinting","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Nova Scotia Health Authority; University of Alberta Hospital; Alberta Hospital Edmonton; Ste. Anne's Hospital","funders":"","keywords":"Escherichia coli; Mass spectrometry; Serotype; Matrix-assisted laser desorption/ionization; Typing; Antigen; Microbiology; Peptide mass fingerprinting; Chemistry; Biology; Trypsin; Chromatography; Proteomics; Desorption; Biochemistry; Genetics; Gene; Enzyme","score_opus":0.03904217616525236,"score_gpt":0.30966366146611896,"score_spread":0.2706214853008666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096989755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92435676,0.004119423,0.06918819,0.0001305627,0.000043412103,0.0002012099,0.0006790025,0.00025026844,0.0010311605],"genre_scores_gemma":[0.920938,0.0016202733,0.07578301,0.0001276372,0.000027698017,0.00007337792,0.00091393053,0.00002468642,0.0004913608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999201,0.00015988867,0.00008075432,0.0001849084,0.00029067576,0.000082784136],"domain_scores_gemma":[0.99967337,0.00008581849,0.00007944168,0.00003491384,0.00009591216,0.00003055129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006338318,0.0005218198,0.00034983092,0.0007112727,0.00015167668,0.00041703816,0.0002802933,0.00043681878,0.00028219167],"category_scores_gemma":[0.0007243027,0.00018372711,0.0003073502,0.00042816743,0.00023757841,0.00039925895,0.00044178977,0.0002879957,0.00036783618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104413164,0.000040959778,0.0041597504,0.00005931494,0.000008384054,0.0000753273,0.000021538533,0.00010955824,0.9816301,0.000023931489,0.00003857864,0.013728198],"study_design_scores_gemma":[0.000026771113,0.00072961906,0.046311248,0.000019912559,0.00007580047,0.0022476595,0.00011800664,0.0051408308,0.9430069,0.00009538269,0.0021931303,0.00003484592],"about_ca_topic_score_codex":0.00047525705,"about_ca_topic_score_gemma":0.00056373066,"teacher_disagreement_score":0.0007112727,"about_ca_system_score_codex":0.0001277191,"about_ca_system_score_gemma":0.00021789856,"threshold_uncertainty_score":0.0033521056},"labels":[],"label_agreement":null},{"id":"W2097157585","doi":"10.1128/jcm.43.9.4567-4573.2005","title":"Human Coronavirus NL-63 Infections in Children: a 1-Year Study","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Stollery Children's Hospital; University of Alberta; Public Health Agency of Canada","funders":"","keywords":"Virology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Betacoronavirus; Coronavirus Infections; Medicine; Biology; Outbreak; Infectious disease (medical specialty); Pathology","score_opus":0.10366809551180332,"score_gpt":0.48833643525862613,"score_spread":0.3846683397468228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097157585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99919194,0.00017339364,0.000034348825,0.000042761258,0.000006316068,0.000013168612,0.00026456424,0.0000023586074,0.0002712065],"genre_scores_gemma":[0.99874675,0.00031237258,0.000065127286,0.00007056446,0.000016706908,0.000024005649,0.00052087026,0.00000331641,0.00024026686],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991357,0.00015220097,0.000082937,0.00015266122,0.0001854556,0.00029116694],"domain_scores_gemma":[0.99861,0.00015031522,0.0004928244,0.00007921646,0.00023323501,0.00043432397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092370546,0.0005221462,0.0007891407,0.001138943,0.0012958236,0.00092100917,0.00030355918,0.00083594455,0.0011095755],"category_scores_gemma":[0.0021655972,0.00068769744,0.0009134049,0.0012750129,0.0005293899,0.0012763548,0.00069414836,0.0014302725,0.00041228055],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000087131906,0.00008735214,0.99808204,0.000008672622,0.000022736413,0.00032336495,0.00045154578,0.000015085116,0.00013036125,0.000007766226,0.0001015272,0.0006824405],"study_design_scores_gemma":[0.000012614025,0.0004808092,0.99718434,0.000010693445,0.00002719886,0.00095620274,0.00079293543,0.00003386144,0.000038450115,0.0000069862845,0.00044946655,0.000006498818],"about_ca_topic_score_codex":0.018129198,"about_ca_topic_score_gemma":0.015352462,"teacher_disagreement_score":0.018129198,"about_ca_system_score_codex":0.0008714624,"about_ca_system_score_gemma":0.00090200955,"threshold_uncertainty_score":0.03604734},"labels":[],"label_agreement":null},{"id":"W2097285284","doi":"10.1128/jcm.00471-15","title":"First Human Case of Fungal Keratitis Caused by a Putatively Novel Species of Lophotrichus","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Keratitis; Cornea; Fungal keratitis; Biology; Microbiology; Antibiotics; Antibiotic therapy; Organism; Medicine; Dermatology; Genetics","score_opus":0.060548248727113764,"score_gpt":0.33794111107090885,"score_spread":0.27739286234379507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097285284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97089696,0.0060321735,0.0060375175,0.0019552966,0.0004005501,0.00014322292,0.00030370793,0.00018211156,0.014048349],"genre_scores_gemma":[0.9950277,0.001388491,0.0011286042,0.0006673985,0.00037116822,0.000013236865,0.00008031846,0.000013424226,0.0013096534],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997191,0.0000376795,0.000022585578,0.00007983508,0.000041953743,0.00009880765],"domain_scores_gemma":[0.99917525,0.00024465588,0.000206282,0.00012897895,0.0000709459,0.00017383778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016912766,0.00077868864,0.000550102,0.00037444883,0.0013250615,0.0008887685,0.0004312957,0.002264361,0.0027474079],"category_scores_gemma":[0.0010712261,0.00037959203,0.00045561197,0.00019111414,0.0011302065,0.0008101055,0.0007560628,0.0012370587,0.000742568],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031197403,0.00021660174,0.03167064,0.00022502728,0.000031150503,0.9460484,0.0010915675,0.000092260605,0.009625854,0.0006050169,0.0024437176,0.007637808],"study_design_scores_gemma":[0.000020175123,0.00034532568,0.008586238,0.00003054466,0.00002275654,0.9846943,0.00029071202,0.00012837176,0.0018514299,0.0002151777,0.003800886,0.000014082584],"about_ca_topic_score_codex":0.0008414949,"about_ca_topic_score_gemma":0.0012600344,"teacher_disagreement_score":0.0027474079,"about_ca_system_score_codex":0.00037347933,"about_ca_system_score_gemma":0.00039209504,"threshold_uncertainty_score":0.009191036},"labels":[],"label_agreement":null},{"id":"W2097396357","doi":"10.1128/jcm.42.9.4390-4392.2004","title":"Bacteremia Caused by <i>Clostridium symbiosum</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Bacteremia; Clostridium; Microbiology; Clostridiaceae; Clostridiales; Medicine; Bacteria; Biology; Antibiotics","score_opus":0.04450118524110068,"score_gpt":0.37402238940645716,"score_spread":0.32952120416535646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097396357","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97742724,0.004040546,0.0028930532,0.0038210524,0.00065525575,0.000093079434,0.00014780188,0.00032209154,0.010599839],"genre_scores_gemma":[0.99640095,0.0009323519,0.00054355897,0.0008943284,0.00057824125,0.000014471375,0.00006438194,0.000016999067,0.0005546485],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996661,0.000044304394,0.000023344079,0.00005823408,0.000035586207,0.00017241637],"domain_scores_gemma":[0.9988617,0.0002732365,0.00030436678,0.0000847477,0.00005025044,0.00042576223],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024907978,0.0018401073,0.00073814957,0.0007433677,0.0035279198,0.0010931633,0.00047184227,0.0035886492,0.0014799449],"category_scores_gemma":[0.002261454,0.0007988856,0.0008966783,0.00051578507,0.0013450128,0.00081757276,0.0010918519,0.0026402108,0.0007544168],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000129327,0.00005674058,0.019938063,0.000043512562,0.000017768045,0.9752848,0.00023770661,0.0001240604,0.001856975,0.0002270814,0.0008620904,0.0012218638],"study_design_scores_gemma":[0.000048020578,0.00039070103,0.01093425,0.00003419344,0.000045700886,0.98520386,0.00025879245,0.00036349904,0.0012217945,0.00022992947,0.0012440928,0.00002521651],"about_ca_topic_score_codex":0.002533737,"about_ca_topic_score_gemma":0.0022828088,"teacher_disagreement_score":0.0035886492,"about_ca_system_score_codex":0.0008010681,"about_ca_system_score_gemma":0.00059570593,"threshold_uncertainty_score":0.0058122277},"labels":[],"label_agreement":null},{"id":"W2097433846","doi":"10.1128/jcm.43.4.1678-1683.2005","title":"Invasive Group A Streptococcal Disease in Alberta, Canada (2000 to 2002)","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Alberta Health; University of Alberta","funders":"","keywords":"Incidence (geometry); Epidemiology; Demography; Medicine; Population; Disease; Age groups; Pediatrics; Internal medicine; Environmental health","score_opus":0.025794302768902308,"score_gpt":0.3457686925659205,"score_spread":0.3199743897970182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097433846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98176587,0.0032652793,0.0002560372,0.0006346768,0.00006493364,0.00008104918,0.006065894,0.00005762384,0.0078085638],"genre_scores_gemma":[0.9861901,0.003267431,0.0006257963,0.0004025633,0.000038067374,0.000019299114,0.0045295414,0.00000846758,0.0049187755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99944216,0.000018408258,0.000021694326,0.000048452057,0.00032121528,0.00014802975],"domain_scores_gemma":[0.99909365,0.000025859297,0.00017014921,0.000011573113,0.00044408493,0.00025466093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003530678,0.00044940732,0.00021657503,0.0018316853,0.0016599392,0.0010728509,0.0007202468,0.0003589939,0.0009671988],"category_scores_gemma":[0.00075162074,0.00024774656,0.00029223668,0.0032131758,0.00040618452,0.00021665433,0.00054483267,0.0004579413,0.00015668894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001531547,0.000050030805,0.97417486,0.000084585474,0.000049429822,0.0010561513,0.000592105,0.0004337232,0.0008892623,0.000112677044,0.003737762,0.018666161],"study_design_scores_gemma":[0.000010636237,0.000030484709,0.99546105,0.000041305488,0.000022235005,0.00041204947,0.0007080129,0.0002440602,0.00012174061,0.000021510865,0.0029181144,0.000008758005],"about_ca_topic_score_codex":0.9940937,"about_ca_topic_score_gemma":0.99694735,"teacher_disagreement_score":0.020855969,"about_ca_system_score_codex":0.020855969,"about_ca_system_score_gemma":0.027239645,"threshold_uncertainty_score":0.15132135},"labels":[],"label_agreement":null},{"id":"W2097603026","doi":"10.1128/jcm.42.6.2501-2507.2004","title":"Characterization of <i>Chlamydia trachomatis omp1</i> Genotypes Detected in Eye Swab Samples from Remote Australian Communities","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"","keywords":"GenBank; Chlamydia trachomatis; Biology; Serotype; Genotype; Trachoma; Phylogenetic tree; Virology; Population; Genetics; Gene; Medicine; Pathology","score_opus":0.06892357998069336,"score_gpt":0.3671500646113046,"score_spread":0.29822648463061124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097603026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997483,0.000028495453,0.00004007206,0.000007467454,6.205049e-7,0.000005125688,0.000073951065,0.0000010544983,0.00009488977],"genre_scores_gemma":[0.9990233,0.00006592933,0.00039376202,0.000018944978,0.000002487855,0.00000942932,0.0003266957,0.0000017181718,0.00015770907],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997441,0.000033486715,0.000029301094,0.0000693011,0.0000679773,0.000055797485],"domain_scores_gemma":[0.99943584,0.00007553264,0.0002469636,0.000028201239,0.00012527223,0.00008819938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019981562,0.00020572379,0.00027718506,0.0005852283,0.00047797392,0.00054169964,0.00016172258,0.0003455593,0.00064575387],"category_scores_gemma":[0.0010625983,0.00018971416,0.0002031769,0.00067980436,0.0003197156,0.00018719191,0.00026784724,0.00022415824,0.00017806387],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003462904,0.000094773066,0.750664,0.00014665305,0.000047316607,0.00092383346,0.0024085874,0.00014354002,0.23658517,0.00003544833,0.00012158951,0.008482773],"study_design_scores_gemma":[0.000002681633,0.00012602229,0.9958126,0.0000088233965,0.000013985462,0.0007078932,0.00045581028,0.0001120407,0.0025675297,0.000006440356,0.00018265244,0.0000033961214],"about_ca_topic_score_codex":0.0111696385,"about_ca_topic_score_gemma":0.011502401,"teacher_disagreement_score":0.0111696385,"about_ca_system_score_codex":0.00028982272,"about_ca_system_score_gemma":0.00024630918,"threshold_uncertainty_score":0.022209227},"labels":[],"label_agreement":null},{"id":"W2097647428","doi":"10.1128/jcm.00688-06","title":"Interlaboratory Study of Quality Control Isolates for a Broth Microdilution Method (Modified CLSI M38-A) for Testing Susceptibilities of Dermatophytes to Antifungals","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"Pfizer","keywords":"Broth microdilution; Posaconazole; Terbinafine; Microbiology; Trichophyton rubrum; Voriconazole; Biology; Trichophyton; Itraconazole; Medicine; Antifungal; Minimum inhibitory concentration; Antimicrobial","score_opus":0.10409866720175578,"score_gpt":0.471099109232466,"score_spread":0.36700044203071025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097647428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8229232,0.0022929462,0.14975154,0.00070632395,0.001180767,0.009426972,0.0046679243,0.0011652502,0.007885233],"genre_scores_gemma":[0.83100194,0.0007401455,0.13555045,0.0014089008,0.00043434915,0.005798932,0.021500982,0.00052252546,0.0030416923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.87028354,0.033024956,0.0207025,0.024879001,0.04813613,0.0029738778],"domain_scores_gemma":[0.89539766,0.029480116,0.0136765735,0.02059356,0.03881872,0.0020335023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.05846933,0.0026551648,0.0013958851,0.0047678403,0.0025405877,0.0034946185,0.0028026577,0.0028505467,0.0019697628],"category_scores_gemma":[0.06546508,0.0011754804,0.0023341996,0.005932332,0.0031951459,0.0010046953,0.003051423,0.001683852,0.0019791431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046362695,0.0089547215,0.26579162,0.0011968887,0.0014391965,0.0009902444,0.008810542,0.0014497505,0.642685,0.0019908822,0.0033477242,0.05870715],"study_design_scores_gemma":[0.0010132183,0.020607604,0.38934284,0.0004281718,0.0020871877,0.0035261742,0.002250802,0.005302848,0.5485808,0.00074518553,0.02574434,0.000370829],"about_ca_topic_score_codex":0.0042196475,"about_ca_topic_score_gemma":0.0043197693,"teacher_disagreement_score":0.05846933,"about_ca_system_score_codex":0.0020963997,"about_ca_system_score_gemma":0.0027153005,"threshold_uncertainty_score":0.30921906},"labels":[],"label_agreement":null},{"id":"W2097852270","doi":"10.1128/jcm.01829-09","title":"Performance of Fusidic Acid (CEM-102) Susceptibility Testing Reagents: Broth Microdilution, Disk Diffusion, and Etest Methods as Applied to <i>Staphylococcus aureus</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Etest; Broth microdilution; Fusidic acid; Staphylococcus aureus; Microbiology; Medicine; Chemistry; Biology; Bacteria; Minimum inhibitory concentration; Antibiotics","score_opus":0.037993534994091326,"score_gpt":0.3854541493509139,"score_spread":0.3474606143568226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097852270","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9267957,0.006954945,0.058838736,0.00032680857,0.00028355722,0.0007996265,0.0016569886,0.0009945639,0.003348909],"genre_scores_gemma":[0.80968314,0.0030954606,0.18134052,0.00040482642,0.00012971833,0.0010059697,0.002197005,0.00012271463,0.0020206347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9650639,0.011558917,0.0041553215,0.0049263733,0.013751311,0.0005442407],"domain_scores_gemma":[0.97596174,0.0085502975,0.0064521274,0.0020998947,0.0063963723,0.00053957454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012267542,0.0015374597,0.0014494667,0.00205499,0.00034208695,0.0016160565,0.001746274,0.0018161219,0.0005049991],"category_scores_gemma":[0.033529576,0.0007368244,0.0006260408,0.0022801103,0.00093521737,0.0008371558,0.0012770181,0.00085359253,0.00092383305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009424908,0.0011360886,0.14527006,0.0011917659,0.0007334398,0.00021096511,0.0020933344,0.0029323034,0.7323597,0.00055370014,0.001007019,0.10308665],"study_design_scores_gemma":[0.00022212183,0.00833099,0.13324837,0.00017800495,0.0004564817,0.0012845467,0.00042426115,0.018412767,0.83335584,0.00027894453,0.0035680274,0.00023960427],"about_ca_topic_score_codex":0.0026582337,"about_ca_topic_score_gemma":0.002911453,"teacher_disagreement_score":0.012267542,"about_ca_system_score_codex":0.0008793331,"about_ca_system_score_gemma":0.001061308,"threshold_uncertainty_score":0.06487775},"labels":[],"label_agreement":null},{"id":"W2097928303","doi":"10.1128/jcm.03549-13","title":"Workflow and Maintenance Characteristics of Five Automated Laboratory Instruments for the Diagnosis of Sexually Transmitted Infections","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. John’s Health Sciences Centre; Queen Elizabeth II Health Sciences Centre; Dalhousie University; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec; McMaster University; St. Joseph’s Healthcare Hamilton; McGill University; Memorial University of Newfoundland","funders":"U.S. Food and Drug Administration","keywords":"Workflow; Chlamydia trachomatis; Roche Diagnostics; Turnaround time; Sample (material); Medicine; Computer science; Gynecology; Chromatography; Internal medicine; Database; Operating system","score_opus":0.020870394018138626,"score_gpt":0.3227179644080006,"score_spread":0.301847570389862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097928303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95067036,0.0011017566,0.04132521,0.00022227637,0.00008007071,0.0011072259,0.0013022623,0.002535789,0.0016549628],"genre_scores_gemma":[0.8601584,0.00045555166,0.1334037,0.00019548257,0.00004840139,0.0011889585,0.0028357748,0.00021477835,0.0014988749],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99038494,0.0024084947,0.001447579,0.0019644825,0.0030967651,0.00069767813],"domain_scores_gemma":[0.969674,0.013556323,0.004689231,0.0028854613,0.008092017,0.0011030282],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013289273,0.00074682175,0.0006206456,0.0021387464,0.00076795585,0.0017803862,0.0017085106,0.00087604515,0.0010369759],"category_scores_gemma":[0.024546681,0.00062309904,0.00067649694,0.0017282212,0.00082020985,0.0008179597,0.0009288166,0.00045090576,0.00060530443],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018835125,0.0019158192,0.24444912,0.0018572299,0.00049826177,0.00040602687,0.0024953343,0.018376367,0.25664857,0.001220656,0.0041903406,0.44910717],"study_design_scores_gemma":[0.0008071184,0.017440103,0.5576064,0.00036594394,0.00071444357,0.0016517966,0.0011133025,0.088005744,0.31550455,0.0011933022,0.015109061,0.00048825337],"about_ca_topic_score_codex":0.0036567787,"about_ca_topic_score_gemma":0.003433823,"teacher_disagreement_score":0.013289273,"about_ca_system_score_codex":0.0017058598,"about_ca_system_score_gemma":0.0029242476,"threshold_uncertainty_score":0.07028121},"labels":[],"label_agreement":null},{"id":"W2097961353","doi":"10.1128/jcm.02252-06","title":"Development of Multiple-Locus Variable-Number Tandem-Repeat Analysis for <i>Yersinia enterocolitica</i> subsp. <i>palearctica</i> and Its Application to Bioserogroup 4/O3 Subtyping","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Multiple Loci VNTR Analysis; Yersinia enterocolitica; Subtyping; Variable number tandem repeat; Biology; Genotyping; Genotype; Yersinia Infections; Tandem repeat; Minisatellite; Genetics; Locus (genetics); Ribotyping; Microbiology; Microsatellite; Escherichia coli; Enterobacteriaceae; Genome; Bacteria; Allele","score_opus":0.030533388218681196,"score_gpt":0.37058501742389904,"score_spread":0.34005162920521786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097961353","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9272212,0.0015631113,0.06898087,0.00012030698,0.000029281195,0.000092206596,0.0006247772,0.00016827986,0.001199979],"genre_scores_gemma":[0.87874585,0.0005846983,0.11940034,0.000044342294,0.000010178158,0.00006871643,0.00065798784,0.000028382103,0.0004594727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99950767,0.00018051494,0.000037682887,0.0001506482,0.000079992096,0.00004352555],"domain_scores_gemma":[0.99924326,0.00033062862,0.00015564411,0.00006482497,0.00013460423,0.000071060094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010306779,0.00033786974,0.00023582511,0.0008777317,0.00015853083,0.00038227535,0.00024225409,0.0003551898,0.00053139945],"category_scores_gemma":[0.0013423152,0.00019966878,0.00028074044,0.00041913014,0.00025122176,0.00026748332,0.00025536845,0.00031957388,0.00020578597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047672537,0.00013285171,0.066392355,0.00013271533,0.0000971468,0.00016755873,0.000094173534,0.0010069428,0.86450166,0.00024403053,0.000099410936,0.06665437],"study_design_scores_gemma":[0.00007441805,0.0012303801,0.2539094,0.000056650457,0.00018657703,0.0022644617,0.00017933974,0.015132715,0.72224146,0.0004087078,0.004267764,0.00004808389],"about_ca_topic_score_codex":0.00077336025,"about_ca_topic_score_gemma":0.0013107731,"teacher_disagreement_score":0.0010306779,"about_ca_system_score_codex":0.00015480985,"about_ca_system_score_gemma":0.0002912037,"threshold_uncertainty_score":0.0054508448},"labels":[],"label_agreement":null},{"id":"W2098000470","doi":"10.1128/jcm.38.9.3165-3173.2000","title":"DNA-Based Diagnostic Approaches for Identification of Burkholderia cepacia Complex, Burkholderia vietnamiensis, Burkholderia multivorans,Burkholderia stabilis, and Burkholderia cepacia Genomovars I and III","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":497,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Burkholderia cepacia complex; Biology; Burkholderia; Microbiology; Restriction fragment length polymorphism; Burkholderia cenocepacia; 16S ribosomal RNA; Genetics; Polymerase chain reaction; Gene; Bacteria","score_opus":0.0847588129003253,"score_gpt":0.3727122903807585,"score_spread":0.2879534774804332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098000470","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9279865,0.010427787,0.05317839,0.0004067708,0.0001231155,0.00087131496,0.002952972,0.0003285982,0.0037244663],"genre_scores_gemma":[0.8965192,0.003956274,0.093619704,0.00022736518,0.00003476107,0.00033139176,0.0026931274,0.000019434456,0.0025988142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938965,0.00010968506,0.000056653644,0.00019344222,0.00018800306,0.00006247915],"domain_scores_gemma":[0.99929273,0.00014505841,0.00021317325,0.000033292043,0.00020532837,0.00011040861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039031947,0.00071062904,0.00037821848,0.0015799167,0.00025213047,0.0004129414,0.0005643513,0.00075079745,0.0009757162],"category_scores_gemma":[0.0008652173,0.0002671831,0.00031455248,0.0006886701,0.00042407736,0.00040642876,0.0005071239,0.00054279173,0.0005869595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000119668315,0.000096041906,0.01041744,0.00024374602,0.000020897141,0.0001555049,0.000106288324,0.0000860178,0.96868056,0.000110609675,0.000049577327,0.01991367],"study_design_scores_gemma":[0.00011104177,0.0023829755,0.10745856,0.00018275874,0.00022245885,0.00456896,0.0012697718,0.004180309,0.868454,0.00057092204,0.0105376765,0.000060546958],"about_ca_topic_score_codex":0.0017746827,"about_ca_topic_score_gemma":0.0030125596,"teacher_disagreement_score":0.0017746827,"about_ca_system_score_codex":0.00043711223,"about_ca_system_score_gemma":0.00038926286,"threshold_uncertainty_score":0.0035286546},"labels":[],"label_agreement":null},{"id":"W2098284425","doi":"10.1128/jcm.02878-12","title":"Carbapenem Disks on MacConkey Agar in Screening Methods for Detection of Carbapenem-Resistant Gram-Negative Rods in Stools","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre; Hôpital du Sacré-Cœur de Montréal; Université de Montréal","funders":"Centers for Disease Control and Prevention","keywords":"Ertapenem; Meropenem; MacConkey agar; Imipenem; Carbapenem; Microbiology; Agar; Agar dilution; Gram; Biology; Medicine; Antibiotics; Bacteria; Minimum inhibitory concentration; Antibiotic resistance","score_opus":0.09476670221305057,"score_gpt":0.45710937208404306,"score_spread":0.3623426698709925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098284425","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8504788,0.012247606,0.11070279,0.0008854592,0.0005512468,0.0018789326,0.002754861,0.0009098752,0.019590437],"genre_scores_gemma":[0.6841347,0.006466603,0.28488442,0.00029050926,0.00012758568,0.0011272434,0.0033694203,0.00019029109,0.01940923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974285,0.0007836333,0.00026071398,0.0005008819,0.00084431865,0.0001819341],"domain_scores_gemma":[0.99825376,0.00054612965,0.00024579026,0.00021737238,0.00053617725,0.00020070843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010191075,0.0009302332,0.0005673316,0.001795144,0.0006017935,0.00094417494,0.0012920204,0.00055909937,0.00292771],"category_scores_gemma":[0.0017383603,0.0007085888,0.0003179956,0.0009719696,0.00041028904,0.0004912913,0.0007886164,0.0007078717,0.0017822447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006021156,0.00022710164,0.0069573503,0.00037930292,0.000032637563,0.00026232487,0.00019671992,0.000109788074,0.9698463,0.00023706944,0.0004196135,0.020729708],"study_design_scores_gemma":[0.00006199482,0.0015210658,0.034589317,0.00016445482,0.00010718632,0.002162622,0.0004386681,0.0026672953,0.94725585,0.00019320587,0.010784799,0.00005355982],"about_ca_topic_score_codex":0.003748338,"about_ca_topic_score_gemma":0.0076576234,"teacher_disagreement_score":0.003748338,"about_ca_system_score_codex":0.00035377048,"about_ca_system_score_gemma":0.00054563774,"threshold_uncertainty_score":0.009794176},"labels":[],"label_agreement":null},{"id":"W2098342846","doi":"10.1128/jcm.42.10.4799-4802.2004","title":"New Method for Laboratory Detection of AmpC β-Lactamases in <i>Escherichia coli</i> and <i>Klebsiella pneumoniae</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Cefoxitin; Klebsiella pneumoniae; Microbiology; Escherichia coli; Klebsiella; Enterobacteriaceae; Agar; Biology; Bacteria; Staphylococcus aureus; Gene","score_opus":0.015460782914120359,"score_gpt":0.3384265615646966,"score_spread":0.32296577865057624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098342846","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.39521304,0.013182705,0.57333285,0.00097255607,0.0017047116,0.001376693,0.00222622,0.0039111846,0.008080135],"genre_scores_gemma":[0.32219663,0.00468695,0.65889066,0.0006347617,0.0003464255,0.0017677908,0.0037133284,0.00018143881,0.0075820703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9952561,0.0011898128,0.00038485168,0.0007654784,0.0022593236,0.00014439972],"domain_scores_gemma":[0.9959954,0.0012549622,0.00084810867,0.00045872573,0.001053788,0.00038906976],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015270261,0.0009996345,0.0009907179,0.0022124778,0.0003897008,0.0007184466,0.0013562466,0.0012348155,0.0019432959],"category_scores_gemma":[0.0029669786,0.0005745282,0.00058184064,0.0008124073,0.0006185088,0.0008158529,0.00129899,0.0017393221,0.0012270748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037635234,0.0001618973,0.0028873428,0.000254683,0.00005340207,0.00009435797,0.00006000297,0.00007498219,0.97533333,0.00012621337,0.00045935187,0.020118095],"study_design_scores_gemma":[0.0001317018,0.0023833294,0.024954941,0.00010090169,0.00025305044,0.007116926,0.00010266391,0.0043707895,0.94857293,0.00020351178,0.011658919,0.0001502499],"about_ca_topic_score_codex":0.0008788958,"about_ca_topic_score_gemma":0.0016759696,"teacher_disagreement_score":0.0022124778,"about_ca_system_score_codex":0.0005486089,"about_ca_system_score_gemma":0.00062630075,"threshold_uncertainty_score":0.008075774},"labels":[],"label_agreement":null},{"id":"W2098388104","doi":"10.1128/jcm.38.2.630-634.2000","title":"PCR-Based Assay To Quantify Human Immunodeficiency Virus Type 1 DNA in Peripheral Blood Mononuclear Cells","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Peripheral blood mononuclear cell; DNA; Virology; Biology; Real-time polymerase chain reaction; Polymerase chain reaction; Virus; genomic DNA; Lentivirus; Molecular biology; Viral load; Viral disease; Immunology; Gene; In vitro; Genetics","score_opus":0.0494607412587213,"score_gpt":0.36830473336542624,"score_spread":0.31884399210670494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098388104","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04838202,0.0067827445,0.920448,0.00037025163,0.0010988575,0.005044042,0.0047383914,0.0039877673,0.00914789],"genre_scores_gemma":[0.051542852,0.0046869,0.9131395,0.00081050984,0.00037666265,0.008538785,0.006645949,0.00027739932,0.013981502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9925719,0.0028711348,0.0005552578,0.0015012041,0.0021423902,0.00035807918],"domain_scores_gemma":[0.9958081,0.0018825083,0.00041066602,0.00048368305,0.0011685623,0.0002464815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003918896,0.0027846752,0.0016860372,0.0038035945,0.0005906378,0.0012262587,0.0018851354,0.0017881229,0.005789129],"category_scores_gemma":[0.0054698843,0.0011688359,0.0012315313,0.0016584158,0.0011461807,0.0009386779,0.00091633294,0.003307307,0.006681028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040500402,0.00085159787,0.0030006536,0.0009524423,0.00014241431,0.00013704551,0.0001689569,0.00062623975,0.94933295,0.001572458,0.0036959867,0.039114185],"study_design_scores_gemma":[0.000469897,0.0053898776,0.01486914,0.0004571517,0.0004137494,0.0027395352,0.00019152259,0.022737449,0.8817518,0.002822076,0.067886434,0.0002714598],"about_ca_topic_score_codex":0.00042615528,"about_ca_topic_score_gemma":0.0009570235,"teacher_disagreement_score":0.005789129,"about_ca_system_score_codex":0.00059251086,"about_ca_system_score_gemma":0.00093385734,"threshold_uncertainty_score":0.02072537},"labels":[],"label_agreement":null},{"id":"W2098415839","doi":"10.1128/jcm.39.6.2306-2307.2001","title":"Comparison of a Polymer Conjugate-Enhanced Enzyme Immunoassay to Ligase Chain Reaction for Diagnosis of <i>Chlamydia trachomatis</i> in Endocervical Swabs","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Chlamydia trachomatis; Ligase chain reaction; Immunoassay; Conjugate; Chlamydiales; Chlamydiaceae; Polymerase chain reaction; Chlamydia; Virology; Enzyme; DNA ligase; Biology; Medicine; Microbiology; Antibody; Immunology; Multiplex polymerase chain reaction; Biochemistry","score_opus":0.07023691695866124,"score_gpt":0.4341726081202296,"score_spread":0.3639356911615684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098415839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9810126,0.0028490613,0.01310428,0.000115263574,0.00009879525,0.00015310379,0.00021772142,0.00018661049,0.002262572],"genre_scores_gemma":[0.96823263,0.0010240964,0.028682357,0.00016978558,0.000064779466,0.00014346524,0.0006760113,0.000028884351,0.0009779767],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9936308,0.0029083886,0.00041125657,0.0012171448,0.0015033144,0.00032899645],"domain_scores_gemma":[0.9928271,0.0048389197,0.0005151689,0.00045019377,0.0010438937,0.00032468495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005119591,0.0008002894,0.00053048274,0.0017243335,0.0002043962,0.00078185135,0.0007532929,0.0011001392,0.0011221274],"category_scores_gemma":[0.010160658,0.0007614071,0.000361177,0.00070076657,0.00052997353,0.00055347953,0.0005146448,0.00069505064,0.0005539884],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02187963,0.0011784214,0.46935546,0.0008533685,0.0006318801,0.00072486565,0.00062638696,0.0014246803,0.39624476,0.00039758527,0.0007140885,0.10596888],"study_design_scores_gemma":[0.0014474911,0.017342074,0.6783,0.00016578434,0.0008339771,0.014122277,0.00036662462,0.022999693,0.2595064,0.00028325667,0.004503927,0.00012852931],"about_ca_topic_score_codex":0.0008103449,"about_ca_topic_score_gemma":0.0017257105,"teacher_disagreement_score":0.005119591,"about_ca_system_score_codex":0.00052350893,"about_ca_system_score_gemma":0.00029082136,"threshold_uncertainty_score":0.02707529},"labels":[],"label_agreement":null},{"id":"W2098518852","doi":"10.1128/jcm.43.4.1552-1563.2005","title":"Genetic Analysis of Enteropathogenic and Enterohemorrhagic <i>Escherichia coli</i> Serogroup O103 Strains by Molecular Typing of Virulence and Housekeeping Genes and Pulsed-Field Gel Electrophoresis","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Multilocus sequence typing; Intimin; Housekeeping gene; Pulsed-field gel electrophoresis; Virulence; Biology; Microbiology; Typing; Escherichia coli; Enteropathogenic Escherichia coli; Plasmid; Shiga toxin; Genetics; Virology; Gene; Genotype; Enterobacteriaceae","score_opus":0.011554374953618378,"score_gpt":0.3044987142698343,"score_spread":0.29294433931621594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098518852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925345,0.00008367486,0.00033389032,0.000016128866,0.0000027448045,0.0000073802785,0.00010869779,0.0000031891104,0.00019084265],"genre_scores_gemma":[0.9976248,0.00016093423,0.0013489374,0.000034282297,0.0000073060164,0.000008753293,0.0005790025,0.0000065939303,0.00022937916],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997284,0.00004355385,0.000033471053,0.00006846443,0.00007106998,0.000055029614],"domain_scores_gemma":[0.99949324,0.00007897372,0.00020887103,0.000029240264,0.00009921311,0.00009041386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016017607,0.00032063833,0.00019156733,0.00043775275,0.00013243174,0.00033680027,0.000107024025,0.00019614692,0.00041916492],"category_scores_gemma":[0.0006840511,0.00011470476,0.00016888851,0.00041326703,0.00015576446,0.00012318038,0.00015247901,0.00022774671,0.00013715596],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071296946,0.00019058984,0.3981873,0.0001183389,0.000058828457,0.00055898627,0.00047448484,0.0001828982,0.584637,0.00006435264,0.00012329286,0.014690994],"study_design_scores_gemma":[0.000023135079,0.0009575123,0.9374312,0.000033004166,0.000084876614,0.002624531,0.00094318687,0.000560311,0.05588458,0.00004980316,0.0013940135,0.000013901362],"about_ca_topic_score_codex":0.0025595364,"about_ca_topic_score_gemma":0.0017296054,"teacher_disagreement_score":0.0025595364,"about_ca_system_score_codex":0.00014686925,"about_ca_system_score_gemma":0.00012959239,"threshold_uncertainty_score":0.005089283},"labels":[],"label_agreement":null},{"id":"W2098597269","doi":"10.1128/jcm.38.6.2051-2054.2000","title":"Rapid Detection of <i>mecA</i> -Positive and <i>mecA</i> -Negative Coagulase-Negative Staphylococci by an Anti-Penicillin Binding Protein 2a Slide Latex Agglutination Test","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"SCCmec; Microbiology; Latex fixation test; Penicillin; Coagulase; Penicillin binding proteins; Staphylococcus; Biology; Agar Dilution Method; Micrococcaceae; Agar dilution; Staphylococcus aureus; Antibacterial agent; Antibiotics; Bacteria; Minimum inhibitory concentration; Methicillin-resistant Staphylococcus aureus; Immunology; Antibody; Genetics","score_opus":0.02074639072626428,"score_gpt":0.31551019889429305,"score_spread":0.2947638081680288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098597269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929899,0.00090058666,0.0036742813,0.000036093963,0.00003706945,0.00014034202,0.00039545156,0.000057088764,0.0017692032],"genre_scores_gemma":[0.9881429,0.00047179568,0.008608815,0.00009575745,0.00002632479,0.00015373171,0.0011091275,0.000010321547,0.0013813147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993042,0.00011875655,0.00008895277,0.0001271045,0.00026880606,0.000092247916],"domain_scores_gemma":[0.9990928,0.00029403917,0.00020604067,0.00003833233,0.00023672023,0.00013201487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060000515,0.00050440204,0.0005147593,0.00079240766,0.00011914656,0.00031570377,0.0002953998,0.00035557212,0.001575113],"category_scores_gemma":[0.0015853341,0.00024148662,0.00021717242,0.00037566148,0.00028897016,0.0002714117,0.0002769613,0.0002784368,0.0004360949],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024524152,0.00057170447,0.41660488,0.00037648587,0.00010301791,0.0031779497,0.0007112223,0.0002387844,0.54421204,0.00018896536,0.00088643056,0.030476097],"study_design_scores_gemma":[0.00019421392,0.005411517,0.80012786,0.00008506097,0.00014628083,0.012234759,0.00073809735,0.0031381329,0.17300005,0.00010038223,0.004749456,0.00007418343],"about_ca_topic_score_codex":0.0008638457,"about_ca_topic_score_gemma":0.0010411736,"teacher_disagreement_score":0.001575113,"about_ca_system_score_codex":0.00014141324,"about_ca_system_score_gemma":0.00022328093,"threshold_uncertainty_score":0.005269289},"labels":[],"label_agreement":null},{"id":"W2098637696","doi":"10.1128/jcm.41.7.2878-2883.2003","title":"Widespread Pyrazinamide-Resistant <i>Mycobacterium tuberculosis</i> Family in a Low-Incidence Setting","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Restriction fragment length polymorphism; Tuberculosis; Molecular epidemiology; Biology; Incidence (geometry); Outbreak; Genotype; Genetics; Virology; Medicine; Gene; Pathology","score_opus":0.03690311735763069,"score_gpt":0.3807135620154303,"score_spread":0.3438104446577996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098637696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900717,0.00022202313,0.00015681342,0.0000572502,0.0000020874274,0.000008803447,0.0000914812,0.000008034503,0.00044635896],"genre_scores_gemma":[0.99953985,0.00008409144,0.00008308521,0.00003321759,0.0000029311132,0.0000017508387,0.000082131955,0.0000014029342,0.00017150189],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963593,0.00005437123,0.000017037646,0.000104467006,0.00006527349,0.00012282006],"domain_scores_gemma":[0.9993961,0.00006491445,0.00022848403,0.00003836434,0.00014850053,0.0001236338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002809134,0.00021744303,0.00025359314,0.00068835216,0.0013015202,0.0005725567,0.0003914469,0.000310686,0.002698335],"category_scores_gemma":[0.00090858573,0.00015274431,0.00010131092,0.0005316059,0.0006352349,0.00018697696,0.00020670787,0.00029274085,0.00016330642],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008062615,0.000029955347,0.9848978,0.000024768317,0.000020928524,0.0011757856,0.000404851,0.00006007057,0.006566028,0.000083339786,0.00034673934,0.006309175],"study_design_scores_gemma":[0.0000060861717,0.0000801796,0.9954952,0.000014156644,0.000017082575,0.002433139,0.0005095002,0.00025664645,0.00053646934,0.00002404379,0.00062149117,0.000006039292],"about_ca_topic_score_codex":0.5932037,"about_ca_topic_score_gemma":0.67696464,"teacher_disagreement_score":0.5932037,"about_ca_system_score_codex":0.0032158818,"about_ca_system_score_gemma":0.0014502965,"threshold_uncertainty_score":0.81838393},"labels":[],"label_agreement":null},{"id":"W2098838428","doi":"10.1128/jcm.00337-08","title":"First Report of Isolation and Characterization of <i>Aurantimonas altamirensis</i> from Clinical Samples","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Cégep Saint-Jean-sur-Richelieu; Institut National de Santé Publique du Québec; Children's & Women's Health Centre of British Columbia; McGill University Health Centre","funders":"","keywords":"Cave; Isolation (microbiology); Genus; Biology; Characterization (materials science); Zoology; Microbiology; Ecology; Physics","score_opus":0.0397098554545367,"score_gpt":0.32726187670836404,"score_spread":0.28755202125382734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098838428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9647051,0.007365094,0.009811012,0.0018497753,0.0011781174,0.0003219798,0.0028842245,0.00026144838,0.011623287],"genre_scores_gemma":[0.9750779,0.003969343,0.01143053,0.0010669443,0.00067061215,0.00007126947,0.003996137,0.00009156688,0.0036257429],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99890864,0.00010659022,0.0002077913,0.00027660717,0.00024149864,0.0002589126],"domain_scores_gemma":[0.9978022,0.00046836177,0.0005101246,0.00033523166,0.00060928636,0.00027476912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003672596,0.00071039377,0.00058091944,0.0006380134,0.0008592481,0.0012853226,0.00078617554,0.0015798294,0.0015939358],"category_scores_gemma":[0.0025404042,0.00032329097,0.0006368989,0.0003955133,0.00061575236,0.0005446619,0.0011369262,0.00063390395,0.0013651255],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016108849,0.00066589523,0.21017332,0.0025727747,0.00025277882,0.08023975,0.005521819,0.00032131016,0.60015804,0.0011047034,0.013279778,0.08409899],"study_design_scores_gemma":[0.000077381905,0.0021768373,0.20977956,0.0004518899,0.0005539396,0.22315903,0.004906732,0.0005150906,0.35767338,0.0005303234,0.19998072,0.00019511452],"about_ca_topic_score_codex":0.0026815862,"about_ca_topic_score_gemma":0.0018480283,"teacher_disagreement_score":0.0026815862,"about_ca_system_score_codex":0.00031703812,"about_ca_system_score_gemma":0.0006304423,"threshold_uncertainty_score":0.005332291},"labels":[],"label_agreement":null},{"id":"W2098951921","doi":"10.1128/jcm.02175-07","title":"New and Sensitive Assay for Determining <i>Pseudomonas aeruginosa</i> Metallo-Beta-Lactamase Resistance to Imipenem","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services; University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Etest; Imipenem; Pseudomonas aeruginosa; Microbiology; Lysis; BETA (programming language); Beta-lactamase; Pseudomonadaceae; Biology; Chemistry; Bacteria; Antibiotic resistance; Molecular biology; Antibiotics; Escherichia coli; Computer science; Biochemistry","score_opus":0.0332829554698882,"score_gpt":0.32995845792712725,"score_spread":0.29667550245723906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098951921","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24861397,0.014141137,0.7143263,0.0013839145,0.0013325092,0.0009543807,0.0033136385,0.004736929,0.011197255],"genre_scores_gemma":[0.4258306,0.00582748,0.5460276,0.0007570369,0.00060341967,0.0009675367,0.0051351683,0.0002142133,0.014637058],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973482,0.0005539607,0.00026208046,0.00040967495,0.0012896429,0.00013643887],"domain_scores_gemma":[0.99874556,0.00031820286,0.00021283192,0.00014188646,0.00040374344,0.00017766532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009289237,0.0012180384,0.00077850505,0.0017490293,0.00034287365,0.0008869489,0.0012063473,0.0014115819,0.001998073],"category_scores_gemma":[0.0012850717,0.0006285324,0.0005046603,0.00047340983,0.0004879136,0.001092189,0.0008072986,0.0018535674,0.0020578825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000075570824,0.000092477734,0.000970456,0.00013743957,0.000020314294,0.000054473116,0.000027150858,0.00010101428,0.986016,0.00016969886,0.0005580617,0.011777364],"study_design_scores_gemma":[0.000034096105,0.00070822105,0.004935283,0.000040091287,0.00007406046,0.0018774081,0.000037915375,0.0039548595,0.9717396,0.00019311601,0.016340585,0.00006480536],"about_ca_topic_score_codex":0.00026762058,"about_ca_topic_score_gemma":0.0005333788,"teacher_disagreement_score":0.001998073,"about_ca_system_score_codex":0.0003151048,"about_ca_system_score_gemma":0.0003040339,"threshold_uncertainty_score":0.006684184},"labels":[],"label_agreement":null},{"id":"W2099484649","doi":"10.1128/jcm.43.3.1372-1373.2005","title":"Confirming Positive Results of Nucleic Acid Amplification Tests (NAATs) for <i>Chlamydia trachomatis</i> : All NAATs Are Not Created Equal","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St Joseph's Health Care","funders":"","keywords":"Nucleic Acid Amplification Tests; Chlamydia trachomatis; Chlamydia; Virology; Biology; Nucleic acid; Immunology; Genetics","score_opus":0.10341819641049924,"score_gpt":0.41995064320991865,"score_spread":0.3165324467994194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099484649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6691439,0.0253761,0.14695793,0.026354766,0.011104077,0.0014776498,0.0015466849,0.0020405652,0.1159983],"genre_scores_gemma":[0.84189475,0.009832284,0.121103525,0.008114583,0.0009890532,0.00020282452,0.0009079317,0.00015874306,0.016796205],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99403,0.0018997879,0.0008216458,0.0004993391,0.0021985655,0.00055063167],"domain_scores_gemma":[0.9919891,0.0021213582,0.001362732,0.0006574419,0.0034111624,0.00045822732],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0058942223,0.0007157084,0.00056565966,0.0012133942,0.001004951,0.0011629598,0.0010832135,0.0025094037,0.003497778],"category_scores_gemma":[0.015577147,0.0002765584,0.0006421397,0.0005082689,0.0013342872,0.0008716484,0.00084786507,0.001424226,0.0031876264],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014830491,0.00075644796,0.34903532,0.0030402215,0.00017480148,0.013084,0.0027351452,0.0005667582,0.22083172,0.009551663,0.07013556,0.32860526],"study_design_scores_gemma":[0.00014587479,0.0026923858,0.17889388,0.0016560002,0.0004856093,0.04687975,0.002199496,0.0030922259,0.5554914,0.005715651,0.20240024,0.00034754115],"about_ca_topic_score_codex":0.0053952476,"about_ca_topic_score_gemma":0.005918642,"teacher_disagreement_score":0.99410576,"about_ca_system_score_codex":0.00052177603,"about_ca_system_score_gemma":0.001586385,"threshold_uncertainty_score":0.031172037},"labels":[],"label_agreement":null},{"id":"W2099577092","doi":"10.1128/jcm.38.4.1488-1494.2000","title":"Identification of <i>Campylobacter jejuni</i> , <i>C. coli</i> , <i>C. lari</i> , <i>C. upsaliensis</i> , <i>Arcobacter butzleri</i> , and <i>A. butzleri</i> -Like Species Based on the <i>glyA</i> Gene","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Arcobacter; Campylobacter; Biology; Campylobacter jejuni; Campylobacter coli; Microbiology; Hybridization probe; Polymerase chain reaction; Specific identification; Genetics; Gene; Bacteria","score_opus":0.03174255759509365,"score_gpt":0.26738591954777463,"score_spread":0.23564336195268099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099577092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98836106,0.0004893864,0.008536633,0.00011746023,0.000023804552,0.00010394169,0.00043483774,0.000090529094,0.0018423544],"genre_scores_gemma":[0.95775706,0.0004924084,0.037893362,0.00020104769,0.000012321525,0.00009389617,0.00195313,0.00002889326,0.0015679591],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99950254,0.000071833165,0.00004743628,0.00017869924,0.00010280171,0.0000966939],"domain_scores_gemma":[0.9995011,0.00012698282,0.00010714839,0.000044106415,0.00013071802,0.00009000747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026801735,0.0004775565,0.00032229145,0.0005224626,0.0002833742,0.00037314018,0.00023867366,0.00059909374,0.0007175903],"category_scores_gemma":[0.00075747597,0.00022677984,0.0002756702,0.00022464908,0.00027976252,0.00025117098,0.00032125917,0.00040267713,0.0004311448],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008772028,0.000030511124,0.0074488074,0.00005002228,0.0000048483603,0.000057902038,0.000069501926,0.000030047262,0.9887068,0.00003537291,0.000030922434,0.0034475224],"study_design_scores_gemma":[0.000018472034,0.0007944276,0.09001484,0.00003782026,0.00006749737,0.002081594,0.00054979423,0.0013719214,0.90277815,0.00011986572,0.0021407406,0.00002483241],"about_ca_topic_score_codex":0.0020864843,"about_ca_topic_score_gemma":0.0036512755,"teacher_disagreement_score":0.0020864843,"about_ca_system_score_codex":0.00024845244,"about_ca_system_score_gemma":0.00035973627,"threshold_uncertainty_score":0.0041486025},"labels":[],"label_agreement":null},{"id":"W2099591360","doi":"10.1128/jcm.01286-07","title":"Evaluation of a Microculture Method for Isolation of <i>Leishmania</i> Parasites from Cutaneous Lesions of Patients in Peru","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care; University of Toronto","funders":"","keywords":"Microculture; Medicine; Leishmaniasis; Cutaneous leishmaniasis; Leishmania; Lesion; Pathology; Dermatology; Biology; Parasite hosting; In vitro","score_opus":0.09586274915933832,"score_gpt":0.4688645615851462,"score_spread":0.3730018124258079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099591360","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580425,0.0008309585,0.0025142992,0.000067347864,0.000014269614,0.000087007706,0.00006766783,0.000048805687,0.00056553556],"genre_scores_gemma":[0.99391264,0.0003207269,0.0053978954,0.00004555504,0.000018902803,0.000046255613,0.00013609628,0.000005644112,0.000116180076],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998585,0.00074015534,0.00007684315,0.0002098421,0.00030070392,0.00008749006],"domain_scores_gemma":[0.9972734,0.0012688723,0.00050414214,0.00017514479,0.0006157505,0.00016270546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014602239,0.00038879595,0.00037541872,0.0006955287,0.00026012913,0.00037261035,0.00040877916,0.00038139572,0.0006172165],"category_scores_gemma":[0.0039135967,0.00029572583,0.00024944553,0.00032445102,0.00031021336,0.00026176372,0.0002788893,0.0002887658,0.00025799265],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017827753,0.0004969976,0.8159869,0.0003435529,0.0001325928,0.0011142791,0.0008834476,0.00040179119,0.13270797,0.000049240316,0.00042488993,0.045675576],"study_design_scores_gemma":[0.00015252722,0.013778611,0.8963247,0.000060747214,0.00028870313,0.010845021,0.00082958274,0.008179693,0.06762164,0.000041517207,0.0018234085,0.000053883145],"about_ca_topic_score_codex":0.0013774688,"about_ca_topic_score_gemma":0.002320083,"teacher_disagreement_score":0.0014602239,"about_ca_system_score_codex":0.00029479744,"about_ca_system_score_gemma":0.00021649142,"threshold_uncertainty_score":0.007722497},"labels":[],"label_agreement":null},{"id":"W2099655488","doi":"10.1128/jcm.02473-14","title":"Development of a Multiple-Locus Variable-Number Tandem-Repeat Typing Scheme for Genetic Fingerprinting of Burkholderia cenocepacia and Application to Nationwide Epidemiological Analysis","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Multiple Loci VNTR Analysis; Burkholderia cenocepacia; Variable number tandem repeat; Biology; Multilocus sequence typing; Burkholderia cepacia complex; Typing; Pulsed-field gel electrophoresis; Genetics; Outbreak; Tandem repeat; Molecular epidemiology; Virology; Microbiology; Genotype; Burkholderia; Virulence; Genome; Gene","score_opus":0.04841220463342657,"score_gpt":0.4078360557231275,"score_spread":0.35942385108970093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099655488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9017575,0.0010436955,0.095645905,0.00007972839,0.00003205114,0.00022947864,0.0004153766,0.00013350515,0.0006628416],"genre_scores_gemma":[0.83201647,0.0003815722,0.16648331,0.00002626631,0.000010582683,0.00011095587,0.00064874784,0.00001260025,0.00030946857],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988035,0.00049557246,0.000107274354,0.00029972315,0.00021447761,0.000079460246],"domain_scores_gemma":[0.9987632,0.0004741091,0.0002413281,0.00018263176,0.00023019411,0.000108601795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015972346,0.00031095775,0.0003066138,0.001147266,0.00020268506,0.00052855496,0.00034152856,0.00041796194,0.0004597021],"category_scores_gemma":[0.0028112999,0.00015684291,0.00038161266,0.0006012176,0.0002605146,0.00053206395,0.0005030523,0.00048561595,0.00030602244],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067847845,0.0002606391,0.1340484,0.00015468938,0.0000705552,0.00011915375,0.00029351682,0.0024303852,0.70237803,0.00053715386,0.00010835485,0.15892066],"study_design_scores_gemma":[0.00016289025,0.008370363,0.37381664,0.00020188847,0.0003751247,0.004817441,0.00076267595,0.085362494,0.5154526,0.0015485344,0.008974028,0.00015527378],"about_ca_topic_score_codex":0.0006168014,"about_ca_topic_score_gemma":0.0007650943,"teacher_disagreement_score":0.0015972346,"about_ca_system_score_codex":0.0001654436,"about_ca_system_score_gemma":0.00037765125,"threshold_uncertainty_score":0.008447111},"labels":[],"label_agreement":null},{"id":"W2099800272","doi":"10.1128/jcm.41.12.5640-5644.2003","title":"Use of Genetic Distance as a Measure of Ongoing Transmission of <i>Mycobacterium tuberculosis</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Research Foundation","keywords":"Molecular epidemiology; Transmission (telecommunications); Mycobacterium tuberculosis; Tuberculosis; Epidemiology; DNA profiling; Outbreak; Incidence (geometry); Biology; Genotype; Genetics; Medicine; Virology; Pathology; DNA; Computer science; Gene; Mathematics","score_opus":0.07053693524701861,"score_gpt":0.38153686851491836,"score_spread":0.31099993326789976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099800272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874916,0.00039704697,0.010091041,0.00006067291,0.000013374673,0.000047512345,0.00044672363,0.000021159958,0.0014307861],"genre_scores_gemma":[0.989777,0.00011664635,0.0094629815,0.000009101358,0.000008229734,0.000027125549,0.00040359076,0.0000050086096,0.00019018246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976342,0.0013936656,0.00021045178,0.00026993564,0.0004090677,0.00008259846],"domain_scores_gemma":[0.9923769,0.0043622376,0.0019677612,0.0006793782,0.0003699841,0.0002436835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018395416,0.00035498894,0.00026472806,0.0022808784,0.0003182255,0.0007173188,0.0005187473,0.00039822108,0.0005397561],"category_scores_gemma":[0.009941674,0.00011839861,0.0002610111,0.0017781766,0.0005989496,0.0007977141,0.0007124959,0.00069044414,0.00018020025],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007431588,0.00019578851,0.9059385,0.0002654592,0.00052859675,0.00037012633,0.00074680493,0.008159341,0.022731481,0.0018573079,0.00029504008,0.058168385],"study_design_scores_gemma":[0.00004518596,0.0018303675,0.93270046,0.000063923275,0.0002148846,0.0026713202,0.000915612,0.037946198,0.016493807,0.0035027117,0.0035072442,0.000108174485],"about_ca_topic_score_codex":0.0011949121,"about_ca_topic_score_gemma":0.0016168107,"teacher_disagreement_score":0.0022808784,"about_ca_system_score_codex":0.00036516367,"about_ca_system_score_gemma":0.00017131424,"threshold_uncertainty_score":0.009728551},"labels":[],"label_agreement":null},{"id":"W2099871431","doi":"10.1128/jcm.42.4.1460-1465.2004","title":"Phenotypic and Genetic Characterization of a Unique Variant of Serogroup C ET-15 Meningococci (with the Antigenic Formula C:2a:P1.7,1) Causing Invasive Meningococcal Disease in Quebec, Canada","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Health Canada","funders":"Health Canada","keywords":"Neisseria meningitidis; Serotype; Meningococcal disease; Neisseriaceae; Virology; Antigen; Biology; Outbreak; Microbiology; Neisseria; Meningococcal vaccine; Genetics; Antibiotics; Bacteria","score_opus":0.015298380734949883,"score_gpt":0.2718527977420839,"score_spread":0.256554417007134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099871431","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957865,0.00029105428,0.00017002922,0.00009065121,0.000012052375,0.00003792978,0.0015130163,0.000004839014,0.002093827],"genre_scores_gemma":[0.9954466,0.0002882049,0.0004231676,0.00010489613,0.000006729296,0.000011614857,0.0018541657,0.000006495367,0.0018581123],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99970263,0.00001541582,0.000014679946,0.00006321939,0.00009744827,0.000106506],"domain_scores_gemma":[0.99967456,0.000022667085,0.000047785466,0.000015527434,0.0001491041,0.00009043991],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011228452,0.0004691842,0.00022388506,0.0005736727,0.0008314775,0.0005620878,0.00041144787,0.00031256097,0.0009952385],"category_scores_gemma":[0.00041666505,0.00013748751,0.00022642702,0.0010229226,0.00043461044,0.00014467782,0.00024546823,0.00041499143,0.0002741845],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001387105,0.00075018546,0.2887349,0.00018638365,0.00015963126,0.004500349,0.0023146686,0.0009593655,0.67289025,0.00054913014,0.002397649,0.025170386],"study_design_scores_gemma":[0.000026192025,0.00035603272,0.9793209,0.000020347738,0.00004565893,0.0025669145,0.0010428091,0.00061022205,0.012270309,0.000026942469,0.0036878234,0.000025864794],"about_ca_topic_score_codex":0.88552916,"about_ca_topic_score_gemma":0.900576,"teacher_disagreement_score":0.11447084,"about_ca_system_score_codex":0.0045901584,"about_ca_system_score_gemma":0.0029751966,"threshold_uncertainty_score":0.23028994},"labels":[],"label_agreement":null},{"id":"W2099887680","doi":"10.1128/jcm.00497-09","title":"Multicenter Comparison of Two Norovirus ORF2-Based Genotyping Protocols","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Agriculture and Agri-Food Canada; BC Centre for Disease Control; Public Health Agency of Canada; Institut National de Santé Publique du Québec; Health Canada","funders":"Health Canada; Centers for Disease Control and Prevention; Johns Hopkins University","keywords":"Genotyping; Norovirus; Biology; Genotype; Outbreak; Typing; Virology; Genetics; Computational biology; Gene","score_opus":0.1721567892563825,"score_gpt":0.5476101253029366,"score_spread":0.3754533360465541,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099887680","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9637241,0.0015028827,0.027146243,0.00021138176,0.00018546879,0.0033451663,0.001015071,0.00021818871,0.0026516984],"genre_scores_gemma":[0.9065631,0.0009982178,0.082862295,0.0002981505,0.00005629718,0.0031842252,0.004695559,0.00008985151,0.0012523293],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.969842,0.016326617,0.0039586243,0.004059585,0.0047132093,0.0010999263],"domain_scores_gemma":[0.96879387,0.009466405,0.0037506523,0.0050053955,0.011760858,0.0012228284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.032367166,0.0006826346,0.0007429913,0.0014246473,0.0006064672,0.0012180413,0.0014307302,0.00086355314,0.00083749613],"category_scores_gemma":[0.034205172,0.00054826046,0.0007272405,0.0012539858,0.00078116026,0.00055251893,0.0012171993,0.0006800373,0.00039051636],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.028987724,0.0031684428,0.46667218,0.0015533448,0.0017294078,0.0003546726,0.005405634,0.0065975045,0.21833062,0.0017767708,0.0034191306,0.26200464],"study_design_scores_gemma":[0.0030928773,0.03017457,0.7215035,0.00044664936,0.0023353035,0.0012280737,0.0023243474,0.015482719,0.20635715,0.00072909927,0.016010787,0.0003150254],"about_ca_topic_score_codex":0.0077949357,"about_ca_topic_score_gemma":0.010324074,"teacher_disagreement_score":0.032367166,"about_ca_system_score_codex":0.0021887585,"about_ca_system_score_gemma":0.002705699,"threshold_uncertainty_score":0.17117602},"labels":[],"label_agreement":null},{"id":"W2099917451","doi":"10.1128/jcm.42.11.5001-5006.2004","title":"Application of Mycobacterial Interspersed Repetitive Unit Typing to Manitoba Tuberculosis Cases: Can Restriction Fragment Length Polymorphism Be Forgotten?","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Health Canada","funders":"","keywords":"Restriction fragment length polymorphism; Typing; Mycobacterium tuberculosis; Biology; Tuberculosis; Population; Genotype; Genetics; Medicine","score_opus":0.06528094616811767,"score_gpt":0.3921490050721477,"score_spread":0.32686805890403003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099917451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96037185,0.020004254,0.0030725284,0.008649209,0.00049980974,0.00017587675,0.00024457526,0.00007709285,0.0069048316],"genre_scores_gemma":[0.97818893,0.011601443,0.0063437675,0.0026358897,0.00025419026,0.000048310245,0.0001719188,0.000019130273,0.00073638937],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9961888,0.0017318,0.00036164772,0.00038094222,0.00093818415,0.00039864896],"domain_scores_gemma":[0.9922484,0.0027937326,0.0014224655,0.000703112,0.0020002231,0.0008319949],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008692837,0.00072482956,0.00079051056,0.0029577957,0.0011322632,0.0018946878,0.0024607936,0.0013659273,0.00065703347],"category_scores_gemma":[0.028060764,0.0010470654,0.00034104736,0.0034939426,0.0024438703,0.0010249268,0.0012139636,0.0017014982,0.00034458222],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016070587,0.000050658655,0.9445818,0.00022486322,0.00008525945,0.0022521282,0.0021745558,0.00023528522,0.0020891814,0.00016682074,0.0011091501,0.046869624],"study_design_scores_gemma":[0.000039481492,0.00051423715,0.97551167,0.00084071176,0.00018476715,0.005219518,0.005001435,0.0025283026,0.0011380005,0.0007435429,0.008209783,0.00006868209],"about_ca_topic_score_codex":0.26385877,"about_ca_topic_score_gemma":0.5078925,"teacher_disagreement_score":0.7361412,"about_ca_system_score_codex":0.0034491676,"about_ca_system_score_gemma":0.004375462,"threshold_uncertainty_score":0.52464586},"labels":[],"label_agreement":null},{"id":"W2099942372","doi":"10.1128/jcm.41.11.5207-5208.2003","title":"Seroprevalence of Antibodies against Human Herpesvirus 8 in a Population of Renal Transplant Recipients at Hotel-Dieu de Quebec Hospital","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôtel-Dieu de Québec; Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Seroprevalence; Renal transplant; Antibody; Virology; Immunology; Medicine; Population; Serology; Kidney; Internal medicine","score_opus":0.025967255574281728,"score_gpt":0.34791874245892035,"score_spread":0.3219514868846386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099942372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99936,0.00008388227,0.00003113697,0.000041544736,0.0000027556523,0.00000706052,0.00012208232,0.0000022629235,0.00034928683],"genre_scores_gemma":[0.99945956,0.00007081438,0.000033169177,0.00005777855,0.000004417781,0.0000046412624,0.00011017312,0.0000010128002,0.00025847697],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99978167,0.00002828751,0.000011571809,0.000031877924,0.000058238427,0.0000883274],"domain_scores_gemma":[0.99927264,0.00006738055,0.00014191435,0.000017994014,0.00024002044,0.00026010725],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025046506,0.0002550171,0.00020581835,0.00069480855,0.0011603964,0.00061464624,0.00036213823,0.00026831395,0.002021401],"category_scores_gemma":[0.00075811427,0.00020537688,0.00017428026,0.000726936,0.00055026193,0.00023872235,0.0002464501,0.0003661814,0.00015644381],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004159642,0.000033246397,0.9972614,0.000007523585,0.000017056866,0.00015318845,0.00026446432,0.00003848651,0.00075265707,0.0000142056115,0.0002463683,0.0011697952],"study_design_scores_gemma":[0.0000061011374,0.00006105058,0.99888486,0.0000060356324,0.000008034669,0.00015941776,0.00041475453,0.00014047023,0.00006738923,0.0000040079494,0.00024362405,0.0000042735496],"about_ca_topic_score_codex":0.81885386,"about_ca_topic_score_gemma":0.8337214,"teacher_disagreement_score":0.81885386,"about_ca_system_score_codex":0.0044099856,"about_ca_system_score_gemma":0.0023141264,"threshold_uncertainty_score":0.36442584},"labels":[],"label_agreement":null},{"id":"W2099990817","doi":"10.1128/jcm.39.10.3633-3636.2001","title":"Comparison of the Vitek Gram-Positive Susceptibility 106 Card, the MRSA-Screen Latex Agglutination Test, and <i>mecA</i> Analysis for Detecting Oxacillin Resistance in a Geographically Diverse Collection of Clinical Isolates of Coagulase-Negative Staphylococci","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Alberta","keywords":"Broth microdilution; Microbiology; Latex fixation test; Direct agglutination test; SCCmec; Biology; Medicine; Staphylococcus aureus; Minimum inhibitory concentration; Methicillin-resistant Staphylococcus aureus; Antibiotics; Bacteria; Serology; Immunology","score_opus":0.0519889929861951,"score_gpt":0.3915977037515991,"score_spread":0.339608710765404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099990817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99804795,0.0005021642,0.00083309767,0.000028058894,0.000013421154,0.00003555962,0.00020984489,0.000022807693,0.0003070368],"genre_scores_gemma":[0.99199826,0.00033683397,0.005332718,0.000072734736,0.000017274317,0.0000370608,0.0019208335,0.000013442196,0.00027097834],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99636215,0.0012027347,0.00041008316,0.0006651941,0.0012217308,0.00013813013],"domain_scores_gemma":[0.9954548,0.0019903434,0.0008390346,0.00027844906,0.0009723601,0.0004650476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022927304,0.00062426855,0.0004668536,0.0016542486,0.0001614157,0.0006515684,0.0007382924,0.0006192485,0.00048096568],"category_scores_gemma":[0.005911304,0.0003338862,0.00036075423,0.001002424,0.00041620713,0.00044774482,0.000477511,0.0003391847,0.00029355945],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068794633,0.0016695673,0.6482145,0.0006060134,0.0005377272,0.00047901765,0.00084042596,0.0010448549,0.26091242,0.00015445054,0.00080189615,0.07785973],"study_design_scores_gemma":[0.00038650577,0.013946099,0.8725961,0.00006438698,0.0003841092,0.0055122757,0.00032038617,0.0065862285,0.098086834,0.00006431873,0.0019895309,0.000063354906],"about_ca_topic_score_codex":0.0013215484,"about_ca_topic_score_gemma":0.0021051161,"teacher_disagreement_score":0.0022927304,"about_ca_system_score_codex":0.0003716103,"about_ca_system_score_gemma":0.00029926118,"threshold_uncertainty_score":0.012125313},"labels":[],"label_agreement":null},{"id":"W2100062394","doi":"10.1128/jcm.39.4.1348-1352.2001","title":"Genotypic, Clinical, and Demographic Characteristics of Children Infected with <i>Helicobacter pylori</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"CagA; Genotype; Helicobacter pylori; Virulence; Gastritis; Spirillaceae; Biology; Microbiology; Medicine; Gastroenterology; Internal medicine; Gene; Genetics","score_opus":0.02586247303658192,"score_gpt":0.31898564023700615,"score_spread":0.29312316720042425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100062394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996805,0.000055364286,0.000030338371,0.000011295429,0.0000014258354,0.000002777504,0.00010334804,0.0000014091958,0.00011351307],"genre_scores_gemma":[0.99961555,0.00003817613,0.00006539789,0.000014823365,0.0000050837953,0.000006079263,0.0002079443,0.0000017837122,0.00004509703],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99961036,0.00008103571,0.000050179497,0.000077910176,0.00007882585,0.00010173698],"domain_scores_gemma":[0.9983588,0.00041309645,0.00072597474,0.00007628591,0.00012438821,0.00030143248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003836676,0.00025831853,0.00027015133,0.00058364664,0.00027846816,0.00030507773,0.00017690261,0.00035206755,0.0010985045],"category_scores_gemma":[0.0025873762,0.00026045524,0.00019022242,0.000510867,0.00038693962,0.00038941635,0.0002590046,0.00032741914,0.00025481416],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000064863016,0.000016995504,0.99882907,0.0000033117335,0.000007666877,0.00012341102,0.00006560251,0.000021181364,0.00019309565,0.0000057838024,0.00004294009,0.00062603486],"study_design_scores_gemma":[0.0000071818527,0.00016560171,0.9982516,0.0000029127796,0.000008663332,0.0011224794,0.00020057157,0.00007475645,0.00006100786,0.000008080983,0.00009372393,0.000003399469],"about_ca_topic_score_codex":0.0029449249,"about_ca_topic_score_gemma":0.0029187112,"teacher_disagreement_score":0.0029449249,"about_ca_system_score_codex":0.0002393927,"about_ca_system_score_gemma":0.00018393886,"threshold_uncertainty_score":0.0058555603},"labels":[],"label_agreement":null},{"id":"W2100284342","doi":"10.1128/jcm.00762-09","title":"Field Performance of a Rapid Diagnostic Test for Influenza in an Ambulatory Setting","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; Institut National de Santé Publique du Québec; Université Laval","funders":"","keywords":"Medicine; Ambulatory; Confidence interval; Internal medicine; Influenza A virus; Influenza-like illness; Orthomyxoviridae; Virology; Virus; Immunology","score_opus":0.11821412989904244,"score_gpt":0.4762978040938773,"score_spread":0.35808367419483483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100284342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927406,0.0013979971,0.003586488,0.00010999255,0.000038959184,0.000079086894,0.00035572084,0.00009749829,0.0015937301],"genre_scores_gemma":[0.9946339,0.00029016455,0.004368824,0.00014425014,0.000052389027,0.000022791799,0.00027989128,0.0000048323527,0.0002028654],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9976164,0.0011157349,0.00013709378,0.00039800187,0.000613965,0.000118697615],"domain_scores_gemma":[0.995381,0.0024202534,0.00096615707,0.00016293766,0.00075954286,0.00031021415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023301844,0.000385004,0.00051484763,0.0006748093,0.0002058676,0.00042118187,0.00032627926,0.0003745565,0.0010486641],"category_scores_gemma":[0.0065635405,0.00020505831,0.00019149264,0.00034955255,0.0002662709,0.00027009958,0.00017107363,0.00029171916,0.00037556837],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015347991,0.000523657,0.9142485,0.00023365462,0.000103179846,0.0005760439,0.00021924902,0.00060016394,0.03558133,0.000062875224,0.0011640391,0.04515231],"study_design_scores_gemma":[0.00010350445,0.008477055,0.96598667,0.000077947065,0.00008879891,0.004863722,0.00032610534,0.0055493475,0.01299587,0.000081952974,0.0014166269,0.000032407017],"about_ca_topic_score_codex":0.0021985257,"about_ca_topic_score_gemma":0.0020618092,"teacher_disagreement_score":0.0023301844,"about_ca_system_score_codex":0.00029352194,"about_ca_system_score_gemma":0.0002687669,"threshold_uncertainty_score":0.01232332},"labels":[],"label_agreement":null},{"id":"W2100310285","doi":"10.1128/jcm.02273-07","title":"Differential Mucoid Exopolysaccharide Production by Members of the <i>Burkholderia cepacia</i> Complex","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"","keywords":"Burkholderia cepacia complex; Burkholderia cenocepacia; Microbiology; Biology; Virulence; Burkholderia; Phenotype; Bacteria; Genetics; Gene","score_opus":0.07144332567261648,"score_gpt":0.3818742764140934,"score_spread":0.3104309507414769,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100310285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99935037,0.000108779794,0.00012745525,0.000019330415,0.0000022683246,0.000003212072,0.000058327612,0.0000017112875,0.00032853102],"genre_scores_gemma":[0.9994143,0.000067920795,0.00020372577,0.000011508019,0.000002657561,0.0000034739064,0.00013250684,0.0000013109229,0.00016262816],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997944,0.00004598279,0.000019159743,0.000023600938,0.000045167086,0.000071596136],"domain_scores_gemma":[0.99975175,0.00005126226,0.000054375356,0.000028504603,0.00003933346,0.00007478608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016163007,0.00020820029,0.00012822516,0.00013981701,0.00012992708,0.0003504242,0.00008339777,0.00016305887,0.0008169058],"category_scores_gemma":[0.0003888853,0.000072274255,0.00014138088,0.00012061064,0.00013405674,0.00020487519,0.0003279168,0.0002833904,0.00017703253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019183852,0.000023649043,0.007050719,0.000015505471,0.0000049049854,0.00010556831,0.00009475427,0.000020544607,0.99127454,0.000037864625,0.000025621172,0.0011545118],"study_design_scores_gemma":[0.00003700421,0.001927198,0.22818768,0.000028698287,0.000042774354,0.003054378,0.00087200943,0.0007517009,0.7624424,0.00016467371,0.002474346,0.000017024413],"about_ca_topic_score_codex":0.00057203905,"about_ca_topic_score_gemma":0.00032560126,"teacher_disagreement_score":0.0008169058,"about_ca_system_score_codex":0.000083318664,"about_ca_system_score_gemma":0.00006463534,"threshold_uncertainty_score":0.0027328134},"labels":[],"label_agreement":null},{"id":"W2100468181","doi":"10.1128/jcm.00208-10","title":"Does Bleach Processing Increase the Accuracy of Sputum Smear Microscopy for Diagnosing Pulmonary Tuberculosis?","year":2010,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; National Institutes of Health; World Health Organization","keywords":"Bleach; Sputum; Medicine; Tuberculosis; Pathology; Chemistry","score_opus":0.10189557130550923,"score_gpt":0.4965586563517766,"score_spread":0.39466308504626735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100468181","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010172978,0.9845942,0.0009066817,0.0026676725,0.0005301514,0.0001942998,0.00020658545,0.000020434723,0.0007070698],"genre_scores_gemma":[0.4257617,0.5563792,0.0052965865,0.009114401,0.002177065,0.00038748598,0.00049045973,0.00006486765,0.00032818294],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.8815008,0.069991805,0.027975313,0.007024826,0.0121508995,0.001356478],"domain_scores_gemma":[0.53951174,0.374173,0.0622441,0.0087648835,0.014447509,0.0008588599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.08673754,0.0017478467,0.0083604455,0.0049903416,0.00062908075,0.0054521547,0.0026183084,0.006373111,0.0023258773],"category_scores_gemma":[0.3152583,0.0019999319,0.025238294,0.004330595,0.0035173665,0.0052716536,0.0022885904,0.0035232045,0.0005256825],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016469792,0.00015478753,0.04161407,0.47957402,0.27129552,0.00035226846,0.00090849877,0.00082013704,0.0012949836,0.00065429916,0.0026512097,0.1842104],"study_design_scores_gemma":[0.0056014312,0.0046378216,0.094445184,0.16942506,0.7002338,0.0011149432,0.0004512786,0.0010637381,0.002360382,0.0027977328,0.017641079,0.00022749645],"about_ca_topic_score_codex":0.00686072,"about_ca_topic_score_gemma":0.010666285,"teacher_disagreement_score":0.08673754,"about_ca_system_score_codex":0.0035852713,"about_ca_system_score_gemma":0.0035870215,"threshold_uncertainty_score":0.45871747},"labels":[],"label_agreement":null},{"id":"W2100538615","doi":"10.1128/jcm.41.10.4823-4825.2003","title":"Investigation of <i>Staphylococcus aureus</i> Isolates Identified as Erythromycin Intermediate by the Vitek-1 System: Comparison with Results Obtained with the Vitek-2 and Phoenix Systems","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Health Sciences Centre; Sunnybrook Health Science Centre; Mount Sinai Hospital","funders":"","keywords":"Erythromycin; Microbiology; Staphylococcus aureus; Broth microdilution; Biology; Micrococcaceae; Lincosamides; Antibiotics; Antibacterial agent; Minimum inhibitory concentration; Bacteria; Genetics","score_opus":0.02526826480400605,"score_gpt":0.3073701762878082,"score_spread":0.28210191148380215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100538615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976133,0.0003719876,0.00093025423,0.00004510751,0.000012192549,0.000042027707,0.00017907254,0.000020910149,0.0007850911],"genre_scores_gemma":[0.9958702,0.00021978523,0.0030707284,0.00004459952,0.000009684016,0.000018509194,0.0004559173,0.0000136212975,0.00029687068],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985536,0.0002634315,0.0003025951,0.00027502928,0.00046617727,0.00013920802],"domain_scores_gemma":[0.998302,0.0005654109,0.00051179,0.00012548621,0.00037575726,0.000119574666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008690166,0.00035809903,0.0005928792,0.001040207,0.00023957742,0.0007336952,0.00031232805,0.0004259528,0.0011009612],"category_scores_gemma":[0.0034429675,0.00020330423,0.00033924083,0.00061486266,0.00031997537,0.00043865168,0.0004597746,0.00043830997,0.00042292493],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015122452,0.00029091534,0.15672392,0.00028769695,0.0000825078,0.0012603082,0.0006988284,0.000106448904,0.8219007,0.000098486795,0.00017763874,0.016860249],"study_design_scores_gemma":[0.000063145504,0.003534983,0.39077502,0.00006909517,0.0002619029,0.012424324,0.0008591819,0.0015199843,0.58797675,0.00008003234,0.002393072,0.000042419895],"about_ca_topic_score_codex":0.0011542657,"about_ca_topic_score_gemma":0.00089806423,"teacher_disagreement_score":0.0011542657,"about_ca_system_score_codex":0.0002730341,"about_ca_system_score_gemma":0.00021814553,"threshold_uncertainty_score":0.0045958757},"labels":[],"label_agreement":null},{"id":"W2100802551","doi":"10.1128/jcm.39.7.2584-2589.2001","title":"Development of a Rapid and Sensitive Test for Identification of Major Pathogens in Bovine Mastitis by PCR","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus dysgalactiae; Mastitis; Streptococcus agalactiae; Streptococcus uberis; Microbiology; Staphylococcus aureus; Biology; California mastitis test; Polymerase chain reaction; Streptococcus; Bacteria; Lactation; Gene; Genetics","score_opus":0.0516547758087942,"score_gpt":0.31636725863665033,"score_spread":0.26471248282785614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100802551","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22740874,0.016065802,0.7387946,0.0006680358,0.0008726418,0.0030905372,0.0018458399,0.004663929,0.0065899454],"genre_scores_gemma":[0.23282455,0.005671202,0.7468564,0.0009375706,0.00019969838,0.0027539472,0.0037133517,0.00022490324,0.0068183537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940916,0.0013351426,0.00037823396,0.001592425,0.0021657217,0.00043696552],"domain_scores_gemma":[0.9970536,0.0013703825,0.0004152579,0.00019311268,0.0007286655,0.00023882421],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030589348,0.0018434674,0.0018225592,0.002137367,0.00025743438,0.0010990133,0.0015866237,0.0026720872,0.0016475117],"category_scores_gemma":[0.0038509986,0.0012651526,0.0009832002,0.0008565632,0.0010409277,0.0009419915,0.0011281171,0.0018004571,0.0024198464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001009722,0.00015109287,0.0012419248,0.00031384354,0.000022555116,0.000066978726,0.00005802472,0.00023457425,0.9787907,0.00016018511,0.00017867077,0.018680602],"study_design_scores_gemma":[0.00011587739,0.0037650515,0.007111404,0.00017628023,0.0001701305,0.0014469922,0.00011335372,0.008213181,0.9662881,0.00030220422,0.012209242,0.00008817269],"about_ca_topic_score_codex":0.000308177,"about_ca_topic_score_gemma":0.00037935708,"teacher_disagreement_score":0.0030589348,"about_ca_system_score_codex":0.00038777856,"about_ca_system_score_gemma":0.0006548657,"threshold_uncertainty_score":0.016177416},"labels":[],"label_agreement":null},{"id":"W2100906449","doi":"10.1128/jcm.41.12.5588-5592.2003","title":"Risk Factors Associated with <i>Campylobacter jejuni</i> Infections in Curacao, Netherlands Antilles","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Campylobacter jejuni; Incidence (geometry); Enteritis; Campylobacter; Biology; Diarrhea; Typing; Pulsed-field gel electrophoresis; Microbiology; Virology; Feces; Campylobacter coli; Campylobacteriosis; Veterinary medicine; Medicine; Genotype; Bacteria; Internal medicine","score_opus":0.05237804229743094,"score_gpt":0.3086333342197557,"score_spread":0.25625529192232477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100906449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991486,0.00017919306,0.00001628547,0.00006260089,0.0000025105965,0.0000064562396,0.00007776954,0.000001621334,0.00050487334],"genre_scores_gemma":[0.99926597,0.00016624715,0.00005214647,0.000035795747,0.0000051237816,0.000009475282,0.00018837946,0.0000020776235,0.00027486376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997528,0.000051559335,0.000021037049,0.00004772963,0.000040861072,0.00008595415],"domain_scores_gemma":[0.99941444,0.00006681118,0.0002807825,0.00001463285,0.000064884625,0.00015833727],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015731156,0.0002507078,0.0002211052,0.00071972056,0.0007543597,0.0006480477,0.0003019333,0.0003991604,0.0012049623],"category_scores_gemma":[0.0011148889,0.0002891504,0.00015688718,0.00072617154,0.00042987446,0.00030414958,0.00041929662,0.0003126021,0.000099781006],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007118847,0.000044645963,0.99668664,0.000014336901,0.00002079224,0.00050197233,0.00031626876,0.000043427546,0.00082015846,0.000021162476,0.00024670863,0.0012127961],"study_design_scores_gemma":[0.000005791389,0.000042612122,0.99826294,0.000015939866,0.000010011186,0.00046068055,0.0005654079,0.000100747966,0.00006143535,0.000011786456,0.00045918598,0.0000034453712],"about_ca_topic_score_codex":0.18893176,"about_ca_topic_score_gemma":0.2566927,"teacher_disagreement_score":0.18893176,"about_ca_system_score_codex":0.0011504452,"about_ca_system_score_gemma":0.0009932691,"threshold_uncertainty_score":0.37566411},"labels":[],"label_agreement":null},{"id":"W2100957537","doi":"10.1128/jcm.01341-08","title":"Concurrent Genotyping and Quantitation of Cytomegalovirus gB Genotypes in Solid-Organ-Transplant Recipients by Use of a Real-Time PCR Assay","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health","funders":"","keywords":"Genotype; Genotyping; Biology; Concordance; Human cytomegalovirus; Virology; Polymerase chain reaction; Coefficient of variation; Molecular biology; Betaherpesvirinae; Real-time polymerase chain reaction; Cytomegalovirus; Gene; Genetics; Herpesviridae; Viral disease; Virus; Chemistry","score_opus":0.10025120206612206,"score_gpt":0.3971522853357679,"score_spread":0.2969010832696458,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100957537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96163076,0.0011934423,0.035932183,0.000061752886,0.00003882235,0.00013912315,0.00029792867,0.00026538662,0.00044052128],"genre_scores_gemma":[0.92500186,0.0004531519,0.07288626,0.0001329558,0.000037382426,0.00039830522,0.0005630731,0.000040281044,0.00048670566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979734,0.0006081821,0.00015656392,0.0005172642,0.000609628,0.00013499796],"domain_scores_gemma":[0.9981331,0.0007980834,0.00037994212,0.00029812532,0.00029317237,0.000097568554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00195805,0.0004895535,0.00066084415,0.00080629374,0.00012367117,0.00068384863,0.00033869402,0.0003654501,0.000367626],"category_scores_gemma":[0.003202631,0.00031067623,0.00032679108,0.00042291227,0.00045773224,0.0003018654,0.00031981737,0.00060708425,0.00021167575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021579494,0.0001925399,0.106350146,0.00021319196,0.000092915325,0.00017822898,0.00054494216,0.0010161237,0.84074533,0.00013215026,0.00016971538,0.048206773],"study_design_scores_gemma":[0.00033091512,0.0040949425,0.18682744,0.00007101188,0.00044894477,0.0040065395,0.0003643491,0.026893867,0.7723169,0.0005086772,0.004033858,0.00010263804],"about_ca_topic_score_codex":0.00026533907,"about_ca_topic_score_gemma":0.00028958076,"teacher_disagreement_score":0.00195805,"about_ca_system_score_codex":0.00020298541,"about_ca_system_score_gemma":0.0001838212,"threshold_uncertainty_score":0.010355294},"labels":[],"label_agreement":null},{"id":"W2100976290","doi":"10.1128/jcm.01432-08","title":"Genomics-Based Molecular Epidemiology of <i>Campylobacter jejuni</i> Isolates from Feedlot Cattle and from People in Alberta, Canada","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Calgary; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Feedlot; Biology; Campylobacter jejuni; Molecular epidemiology; Campylobacter; Genomics; Gene; Human pathogen; Genome; Genetics; Microbiology; Veterinary medicine; Bacteria; Genotype; Ecology","score_opus":0.03674976460482713,"score_gpt":0.2756840044634453,"score_spread":0.2389342398586182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100976290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974814,0.00045848638,0.00010337413,0.00007885911,0.0000034127602,0.000016270393,0.0008483265,0.000005017542,0.0010048258],"genre_scores_gemma":[0.99807405,0.00030427185,0.00021373396,0.000041590516,0.0000027339465,0.000006047066,0.00072357384,0.0000014088338,0.0006324689],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968827,0.000025653553,0.000010974018,0.00006196262,0.00010509003,0.00010810937],"domain_scores_gemma":[0.9997514,0.000022612387,0.00004109287,0.000006595646,0.00010457807,0.00007372546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021037317,0.00022984635,0.0001854226,0.0016036181,0.001186058,0.0007856206,0.00038450264,0.00025705644,0.0009345832],"category_scores_gemma":[0.00040869575,0.00015100348,0.00016460007,0.002095785,0.00052048726,0.00009975513,0.00034857952,0.00023107002,0.000077189085],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019936795,0.00002963032,0.9778041,0.000058912545,0.000036611425,0.00022020868,0.0019813934,0.00016814872,0.008383109,0.00013317727,0.00063285,0.010352601],"study_design_scores_gemma":[0.0000019709485,0.000017283395,0.99817896,0.000007858587,0.000009958506,0.00007602786,0.0010839701,0.000074170566,0.00015776059,0.000009807892,0.0003803477,0.0000019656982],"about_ca_topic_score_codex":0.94546956,"about_ca_topic_score_gemma":0.9662574,"teacher_disagreement_score":0.05453044,"about_ca_system_score_codex":0.007056692,"about_ca_system_score_gemma":0.0042880327,"threshold_uncertainty_score":0.10970312},"labels":[],"label_agreement":null},{"id":"W2101164706","doi":"10.1128/jcm.41.9.4043-4048.2003","title":"Biofilm Formation by Group A Streptococci: Is There a Relationship with Treatment Failure?","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Directorate for Biological Sciences","keywords":"Pharyngitis; Penicillin; Biofilm; Antibiotics; Microbiology; Streptococcus; Streptococcus pyogenes; Bacteria; Medicine; Biology; Internal medicine; Staphylococcus aureus","score_opus":0.05502200261060909,"score_gpt":0.3642801542477207,"score_spread":0.3092581516371116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101164706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.976538,0.018493136,0.0009483641,0.00215166,0.00007385191,0.000028039392,0.00017437215,0.000018702984,0.0015740574],"genre_scores_gemma":[0.9977666,0.0014880996,0.00023706863,0.00015964148,0.00009894901,0.000010877765,0.00007677826,0.0000053170857,0.00015669578],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974021,0.00084148603,0.00036411683,0.000323979,0.0007736033,0.0002948749],"domain_scores_gemma":[0.97694826,0.009985614,0.009513081,0.00093711424,0.0014019937,0.0012140414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032226036,0.00041176035,0.000805093,0.0011943454,0.00042975546,0.00085638,0.0006487389,0.0016931802,0.004176429],"category_scores_gemma":[0.019225977,0.0002620109,0.000709546,0.0015420127,0.0008235329,0.0012436936,0.00055666344,0.0013405323,0.0005291548],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017034811,0.00004394454,0.990216,0.000054538403,0.000084539715,0.00023087564,0.00008005517,0.000037841073,0.00025724102,0.00003153994,0.00013754946,0.008655658],"study_design_scores_gemma":[0.000007581937,0.00054456596,0.99550664,0.00010129507,0.00011812104,0.001920379,0.00041564176,0.000579974,0.00013080408,0.0001564875,0.00050500693,0.000013598818],"about_ca_topic_score_codex":0.0014303011,"about_ca_topic_score_gemma":0.0012824349,"teacher_disagreement_score":0.004176429,"about_ca_system_score_codex":0.00035085896,"about_ca_system_score_gemma":0.00049850857,"threshold_uncertainty_score":0.017042935},"labels":[],"label_agreement":null},{"id":"W2101257888","doi":"10.1128/jcm.43.2.933-937.2005","title":"Identification and Characterization of Sporadic Isolates of <i>Streptococcus iniae</i> Isolated from Humans","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus iniae; Microbiology; Biology; Streptococcus; Tetracycline; Streptococcaceae; Virology; Antibiotics; Bacteria; Genetics","score_opus":0.02896369898917721,"score_gpt":0.3480282949493319,"score_spread":0.3190645959601547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101257888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99901354,0.00018684541,0.00038372667,0.000019357007,0.000004286162,0.000019032785,0.00010165859,0.0000050912495,0.00026639007],"genre_scores_gemma":[0.9976228,0.00018903406,0.001263525,0.0000563932,0.00001565296,0.000012694517,0.0006248964,0.000005989704,0.00020899175],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99939466,0.00011059124,0.0000684173,0.00013352705,0.00020733703,0.00008553892],"domain_scores_gemma":[0.9992987,0.00010551375,0.00018570214,0.00007654993,0.0002476044,0.00008582445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037977175,0.00032210408,0.00034099745,0.0007744867,0.0004460808,0.000534999,0.00023907085,0.00035686977,0.00036087615],"category_scores_gemma":[0.0017334801,0.00018518761,0.00017057244,0.00043307032,0.00033483515,0.00014350418,0.0002533505,0.00019059952,0.0003098935],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005174745,0.00023378286,0.8383413,0.00015719526,0.00003910676,0.0024166477,0.0012815688,0.00011247649,0.13626117,0.00008124404,0.0004952184,0.020062821],"study_design_scores_gemma":[0.00005364899,0.0022156881,0.9201615,0.000045594137,0.00011252461,0.023212869,0.0017685842,0.0006809233,0.047122143,0.00009032273,0.004513444,0.00002273336],"about_ca_topic_score_codex":0.00309791,"about_ca_topic_score_gemma":0.0033502118,"teacher_disagreement_score":0.00309791,"about_ca_system_score_codex":0.00023279534,"about_ca_system_score_gemma":0.00036509125,"threshold_uncertainty_score":0.0061597824},"labels":[],"label_agreement":null},{"id":"W2101372466","doi":"10.1128/jcm.41.10.4790-4792.2003","title":"Assessment of Immunoglobulin M Enzyme Immunoassays for Diagnosis of Measles","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. John’s Health Sciences Centre; Health Canada","funders":"","keywords":"Immunoassay; Antibody; Measles; Immunoglobulin G; Enzyme; Immunoglobulin M; Molecular biology; Virology; Chemistry; Chromatography; Biology; Immunology; Biochemistry; Vaccination","score_opus":0.0656049550423408,"score_gpt":0.43331916627572903,"score_spread":0.3677142112333882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101372466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9383329,0.01162017,0.038319297,0.00061442575,0.00033335638,0.0003703792,0.0003861249,0.00066689204,0.00935644],"genre_scores_gemma":[0.9765015,0.0011914109,0.02065729,0.00024784575,0.00007859177,0.00009454958,0.00035253877,0.00003214704,0.00084423315],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9896129,0.0049709054,0.0008866331,0.0007456764,0.0032444764,0.0005394722],"domain_scores_gemma":[0.9878753,0.0063984003,0.0010906312,0.0006087756,0.0036888947,0.00033811675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013117153,0.0011692657,0.0006442045,0.0020944802,0.00035581138,0.0008925595,0.0008221615,0.001280476,0.00084580295],"category_scores_gemma":[0.02350653,0.00049736374,0.00044102146,0.00072619715,0.00055100245,0.00063907844,0.0003166053,0.0011128485,0.00061917974],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002334601,0.00094439177,0.6020393,0.0006490685,0.00036108433,0.0016374716,0.00069239986,0.0008471741,0.29321873,0.0004929633,0.0015059838,0.095276766],"study_design_scores_gemma":[0.00027306943,0.008412153,0.57902414,0.0003339013,0.0006747556,0.013875752,0.00067353563,0.022711461,0.35809425,0.00083540194,0.014983233,0.00010836457],"about_ca_topic_score_codex":0.0011933544,"about_ca_topic_score_gemma":0.0009265287,"teacher_disagreement_score":0.013117153,"about_ca_system_score_codex":0.00042614917,"about_ca_system_score_gemma":0.00034807873,"threshold_uncertainty_score":0.069370925},"labels":[],"label_agreement":null},{"id":"W2101390052","doi":"10.1128/jcm.02090-10","title":"Comparison of the Luminex xTAG Respiratory Viral Panel with xTAG Respiratory Viral Panel Fast for Diagnosis of Respiratory Virus Infections","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Provincial Laboratory of Public Health","funders":"","keywords":"Human metapneumovirus; Virology; Respiratory system; Virus; Viral load; Multiplex; Influenzavirus B; Influenza A virus; Medicine; Biology; Orthomyxoviridae; Respiratory tract infections; Bioinformatics; Internal medicine","score_opus":0.32113495806409503,"score_gpt":0.4684122473697838,"score_spread":0.14727728930568879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101390052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87251353,0.015031793,0.09053302,0.0008298657,0.000735921,0.0008642876,0.0053429143,0.0010258962,0.013122746],"genre_scores_gemma":[0.8280175,0.006361857,0.14109023,0.0016342691,0.00039942685,0.0012022668,0.013530406,0.0002408093,0.007523214],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.98354393,0.0056323293,0.0013989011,0.002168622,0.006526495,0.0007296902],"domain_scores_gemma":[0.99252796,0.0037407381,0.0009389741,0.0007265409,0.0017847135,0.0002810919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.016264258,0.0010613949,0.0013558296,0.0025334384,0.00026881736,0.0024014774,0.0017961484,0.0012302605,0.0014130883],"category_scores_gemma":[0.011225269,0.0006818891,0.00086687144,0.0017720239,0.0003720639,0.0018274558,0.0013736639,0.0009724212,0.00079125736],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017587379,0.0027277467,0.30669773,0.0024923342,0.0014298246,0.0007177939,0.0013710597,0.014714049,0.23273946,0.0034518307,0.011601171,0.40446964],"study_design_scores_gemma":[0.0007951447,0.014993046,0.579355,0.0006331737,0.0011244061,0.0072025494,0.0007365046,0.1034848,0.24092485,0.0020052048,0.0483511,0.00039419843],"about_ca_topic_score_codex":0.0015239067,"about_ca_topic_score_gemma":0.0016841962,"teacher_disagreement_score":0.016264258,"about_ca_system_score_codex":0.0011161944,"about_ca_system_score_gemma":0.00061099604,"threshold_uncertainty_score":0.08601463},"labels":[],"label_agreement":null},{"id":"W2101824041","doi":"10.1128/jcm.40.11.4077-4080.2002","title":"Method for Inactivating and Fixing Unstained Smear Preparations of <i>Mycobacterium tuberculosis</i> for Improved Laboratory Safety","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Medical Device Sterilization and Disinfection","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"","keywords":"Mycobacterium tuberculosis; Sputum; Tuberculosis; Microbiology; Mycobacterium; Biosafety; Medicine; Chemistry; Biology; Pathology","score_opus":0.03165064383188297,"score_gpt":0.3588900786440121,"score_spread":0.32723943481212914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101824041","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32249096,0.01625046,0.6359283,0.00087936025,0.0010844198,0.0028842173,0.0011645149,0.003447821,0.015869984],"genre_scores_gemma":[0.2877741,0.011680539,0.6764264,0.0005624597,0.0001325585,0.002451809,0.0024503656,0.00030181586,0.018219866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99950457,0.00009373209,0.000057439087,0.00009864326,0.00018566799,0.000059981554],"domain_scores_gemma":[0.9994025,0.00019178452,0.00010073406,0.00012993743,0.00013221835,0.00004272253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050738844,0.00076553336,0.00038414632,0.0010525534,0.0005295918,0.0002829819,0.0009029171,0.00054054224,0.004139052],"category_scores_gemma":[0.000717313,0.00032189133,0.00037883522,0.00038161702,0.00033508393,0.0003079004,0.0003077419,0.0009713998,0.0019216384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000077653895,0.000051984865,0.00034353396,0.00023322253,0.000010888175,0.00011702185,0.000055964494,0.000030261923,0.98591554,0.00021607793,0.0004934595,0.012454257],"study_design_scores_gemma":[0.00004415251,0.0007327687,0.005193641,0.0000842404,0.00009660843,0.0030240752,0.0000677362,0.00086201966,0.9658211,0.00019817037,0.023837859,0.000037790975],"about_ca_topic_score_codex":0.00067627965,"about_ca_topic_score_gemma":0.0014459243,"teacher_disagreement_score":0.004139052,"about_ca_system_score_codex":0.0001807954,"about_ca_system_score_gemma":0.000457237,"threshold_uncertainty_score":0.013846576},"labels":[],"label_agreement":null},{"id":"W2101924551","doi":"10.1128/jcm.01916-05","title":"Clonality and Antimicrobial Resistance Gene Profiles of Multidrug- Resistant <i>Salmonella enterica</i> Serovar Infantis Isolates from Four Public Hospitals in Rio de Janeiro, Brazil","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Public Health Agency of Canada","keywords":"Microbiology; Integron; Serotype; Pulsed-field gel electrophoresis; Biology; Salmonella enterica; Multiple drug resistance; Antimicrobial; Salmonella; Antibiotic resistance; Cephalosporin; Virology; Antibiotics; Genotype; Bacteria; Gene; Genetics","score_opus":0.029959436207588362,"score_gpt":0.2878559789553339,"score_spread":0.25789654274774554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101924551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99966776,0.0000804703,0.00004729121,0.000013472314,9.640692e-7,0.000008142007,0.000043388452,0.0000017426298,0.00013683984],"genre_scores_gemma":[0.9996213,0.000080827274,0.00012428412,0.000015451657,0.0000020518503,0.0000063647335,0.00010039546,0.000001057122,0.000048407714],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995796,0.00006188326,0.0000548249,0.00012029331,0.000097014585,0.00008641865],"domain_scores_gemma":[0.99909186,0.00013580508,0.00042121898,0.00006303813,0.00018246828,0.00010561754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041905843,0.0002245979,0.00020041951,0.0010181144,0.000271493,0.00044294895,0.00029788772,0.00024563118,0.00036738793],"category_scores_gemma":[0.0016948307,0.00021009071,0.00020406923,0.0004666748,0.00038978143,0.00019590001,0.0003851527,0.0001523507,0.00009009996],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005894368,0.000024890462,0.98104995,0.000030037228,0.00002722482,0.0002713828,0.0012199766,0.00004621916,0.011888819,0.000022756238,0.000048773563,0.005310932],"study_design_scores_gemma":[0.000009509087,0.00015805116,0.99598205,0.000015844465,0.000030645544,0.0009160233,0.0009765363,0.00014049519,0.0013505617,0.000011521567,0.000402884,0.0000059788376],"about_ca_topic_score_codex":0.014724691,"about_ca_topic_score_gemma":0.023789555,"teacher_disagreement_score":0.014724691,"about_ca_system_score_codex":0.00053876895,"about_ca_system_score_gemma":0.00030780118,"threshold_uncertainty_score":0.02927798},"labels":[],"label_agreement":null},{"id":"W2102109252","doi":"10.1128/jcm.40.3.1113-1115.2002","title":"Pulmonary Colonization by <i>Chrysosporium zonatum</i> Associated with Allergic Inflammation in an Immunocompetent Subject","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Fungus; Microbiology; Heterothallic; Biology; Colonization; Mating type; Botany","score_opus":0.03135150481159526,"score_gpt":0.3131034837105918,"score_spread":0.28175197889899656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102109252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99710506,0.00076299405,0.000229856,0.00017425859,0.000020265103,0.000023850364,0.000018450408,0.000021471848,0.0016439097],"genre_scores_gemma":[0.99916553,0.00028326493,0.00011577175,0.000107466556,0.000082280465,0.000004102387,0.000015023019,0.0000034228317,0.00022305567],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997601,0.000041659107,0.000019340645,0.000056961777,0.000030099043,0.000091789065],"domain_scores_gemma":[0.99946076,0.00019088405,0.0001410104,0.000037568803,0.000029075143,0.00014065797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021816842,0.0007750165,0.00066829077,0.0007200405,0.0016893365,0.00072411983,0.00027208118,0.0012291898,0.002034414],"category_scores_gemma":[0.001182281,0.00041296225,0.0003262911,0.00037617175,0.0009385304,0.00053485547,0.00053045794,0.0006826847,0.0003925008],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037402604,0.0002391193,0.14868762,0.00013234495,0.0000222204,0.8337076,0.0015695202,0.00009266733,0.0110554835,0.00017806684,0.00032969017,0.003611634],"study_design_scores_gemma":[0.000041979874,0.001000825,0.10248713,0.000023100329,0.000050917286,0.8922707,0.0007139284,0.00025277585,0.0017191593,0.00008461837,0.0013372729,0.000017597366],"about_ca_topic_score_codex":0.001277318,"about_ca_topic_score_gemma":0.0012325124,"teacher_disagreement_score":0.002034414,"about_ca_system_score_codex":0.00024942248,"about_ca_system_score_gemma":0.00020208377,"threshold_uncertainty_score":0.006805837},"labels":[],"label_agreement":null},{"id":"W2102159027","doi":"10.1128/jcm.43.2.740-744.2005","title":"A Novel <i>Shigella dysenteriae</i> Serovar Isolated in Canada","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Provincial Laboratory of Public Health; Health Canada","funders":"Centers for Disease Control and Prevention; World Health Organization","keywords":"Shigella dysenteriae; Shigella; Serotype; Microbiology; Biology; Shigella flexneri; Pulsed-field gel electrophoresis; Antiserum; Bacillary dysentery; Escherichia coli; Virology; Antigen; Dysentery; Gene; Genetics; Genotype","score_opus":0.02718082346481346,"score_gpt":0.3388613974812345,"score_spread":0.311680574016421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102159027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960424,0.00026355532,0.00036235328,0.0001154864,0.000019644232,0.000028910505,0.00041876553,0.000019793772,0.0027291998],"genre_scores_gemma":[0.9972868,0.00022656258,0.00055882375,0.000094134026,0.0000056012987,0.0000036656,0.0004417937,0.000008397143,0.0013742285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99957746,0.0000103792545,0.000015871514,0.000084881416,0.00015008407,0.00016127812],"domain_scores_gemma":[0.9995123,0.000016140986,0.00006336851,0.000013972857,0.00024038983,0.000153693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013185036,0.00041541716,0.00023858652,0.0007121127,0.0028427409,0.000998704,0.00041380062,0.00021966186,0.0012289399],"category_scores_gemma":[0.0004756264,0.00022703882,0.00021434607,0.0010323446,0.00064878986,0.00018103016,0.00045848024,0.00050572207,0.00013463257],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005382819,0.00014287147,0.8475802,0.00019501119,0.000064846914,0.006685458,0.0039439504,0.00066338014,0.10787239,0.00088754797,0.0024955634,0.028930468],"study_design_scores_gemma":[0.00003439798,0.00023877114,0.9535317,0.000041651503,0.000067649555,0.0051702657,0.0053506843,0.00091471436,0.018360583,0.00010704558,0.016141094,0.000041471278],"about_ca_topic_score_codex":0.9391704,"about_ca_topic_score_gemma":0.96614933,"teacher_disagreement_score":0.06082958,"about_ca_system_score_codex":0.007492266,"about_ca_system_score_gemma":0.011828957,"threshold_uncertainty_score":0.12237561},"labels":[],"label_agreement":null},{"id":"W2102217124","doi":"10.1128/jcm.38.3.1042-1047.2000","title":"Identification and Population Structure of <i>Burkholderia stabilis</i> sp. nov. (formerly <i>Burkholderia cepacia</i> Genomovar IV)","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"","keywords":"Burkholderia cepacia complex; Burkholderia; Biology; Microbiology; Burkholderia cenocepacia; Genetics; Bacteria","score_opus":0.02276395632841371,"score_gpt":0.35895702955713354,"score_spread":0.33619307322871983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102217124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986749,0.00027682507,0.00045474185,0.000012043289,0.0000033070314,0.00001359507,0.00017021176,0.0000055335267,0.00038876306],"genre_scores_gemma":[0.9979323,0.0001925576,0.0009184106,0.000017819124,0.000007602883,0.000013798879,0.0007019733,0.0000033573,0.00021214674],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996505,0.000035269444,0.000028418552,0.00015608115,0.00005257027,0.000077266064],"domain_scores_gemma":[0.9995505,0.00005261898,0.00017587833,0.000030317102,0.00011585834,0.00007487557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002214884,0.00021436856,0.0001674278,0.0010318166,0.00023957787,0.0005855268,0.00028358688,0.00033814588,0.00045963377],"category_scores_gemma":[0.00052021747,0.00012902815,0.00014385326,0.00049370877,0.000256432,0.00034257467,0.00038591458,0.00027155122,0.00027024976],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028858994,0.00009885799,0.5935088,0.00005400094,0.000041274092,0.00019454554,0.0007162297,0.000283893,0.3843007,0.00017117869,0.00009331469,0.02024863],"study_design_scores_gemma":[0.0000106030375,0.00047185415,0.9757528,0.000014430806,0.000043227832,0.0012494004,0.00092513586,0.000921255,0.01915638,0.000100888305,0.0013388908,0.000015230547],"about_ca_topic_score_codex":0.0035116635,"about_ca_topic_score_gemma":0.002809497,"teacher_disagreement_score":0.0035116635,"about_ca_system_score_codex":0.00025617637,"about_ca_system_score_gemma":0.0002349899,"threshold_uncertainty_score":0.0069824457},"labels":[],"label_agreement":null},{"id":"W2102321404","doi":"10.1128/jcm.01410-14","title":"Development of a New Molecular Subtyping Tool for Salmonella enterica Serovar Enteritidis Based on Single Nucleotide Polymorphism Genotyping Using PCR","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Subtyping; Biology; Salmonella enteritidis; Pulsed-field gel electrophoresis; Genotyping; Typing; Genetics; Single-nucleotide polymorphism; Phage typing; Polymerase chain reaction; Salmonella enterica; Serotype; Virology; Salmonella; Genotype; Gene; Bacteria","score_opus":0.050952899357168964,"score_gpt":0.32104561365383066,"score_spread":0.2700927142966617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102321404","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19120611,0.0040810625,0.79671407,0.00059817574,0.00034045798,0.0010378788,0.0010162133,0.0026571166,0.002348955],"genre_scores_gemma":[0.1798867,0.0019622752,0.81454146,0.00032788876,0.00006940349,0.0004152368,0.00092348614,0.000101883816,0.0017716413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757844,0.0005459052,0.0002316839,0.0006443218,0.0008843188,0.00011536079],"domain_scores_gemma":[0.99789184,0.00094443484,0.00035623042,0.00018826454,0.0004712868,0.00014793352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019925353,0.0012192061,0.0010311882,0.0017770292,0.00020923669,0.0009766128,0.0009249436,0.000998745,0.00073324685],"category_scores_gemma":[0.0025563308,0.0007114493,0.0007535201,0.00061257154,0.00074015814,0.0009808855,0.0007084096,0.0015517074,0.0011381605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013791089,0.00013562382,0.0026880088,0.00017962868,0.000026474267,0.00011204369,0.000043981297,0.00073189806,0.94362414,0.00035139517,0.00016702375,0.051801883],"study_design_scores_gemma":[0.00006746657,0.0019898182,0.0115594715,0.00009622866,0.00017999238,0.0015917885,0.00006892673,0.026292806,0.948668,0.0005856756,0.008795966,0.00010371719],"about_ca_topic_score_codex":0.00045173842,"about_ca_topic_score_gemma":0.0006917245,"teacher_disagreement_score":0.0019925353,"about_ca_system_score_codex":0.00021992256,"about_ca_system_score_gemma":0.0005030471,"threshold_uncertainty_score":0.010537684},"labels":[],"label_agreement":null},{"id":"W2102338246","doi":"10.1128/jcm.02589-14","title":"Whole-Genome Phylogenomic Heterogeneity of Neisseria gonorrhoeae Isolates with Decreased Cephalosporin Susceptibility Collected in Canada between 1989 and 2013","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Dr. Georges-L.-Dumont University Hospital Centre; Provincial Laboratory of Public Health; Ste. Anne's Hospital; BC Centre for Disease Control; Public Health Ontario; Public Health Agency of Canada; Toronto Public Health; Alberta Health Services; Saskatchewan Disease Control Laboratory; University of Manitoba","funders":"","keywords":"Biology; Neisseria gonorrhoeae; Genetics; Clade; Whole genome sequencing; Genome; Multilocus sequence typing; Typing; Molecular epidemiology; Cephalosporin; Allele; Phylogenetics; Genotype; Evolutionary biology; Gene; Antibiotics","score_opus":0.026742534660862422,"score_gpt":0.30824294275257075,"score_spread":0.28150040809170834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102338246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98193526,0.0007976931,0.00024625956,0.00009787414,0.000006987318,0.00003599524,0.015540122,0.000022002232,0.0013178182],"genre_scores_gemma":[0.9853393,0.00054363825,0.00071599643,0.00008327511,0.0000033994634,0.00001422695,0.012327769,0.000008460032,0.0009640498],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996494,0.000010263376,0.000011136658,0.00008882648,0.00010556507,0.00013481417],"domain_scores_gemma":[0.99955684,0.00002118057,0.0000670335,0.000015147743,0.00024748562,0.000092254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000204825,0.00031359552,0.00037478204,0.0019035737,0.0009995293,0.0008196778,0.000366131,0.00026114227,0.00075304596],"category_scores_gemma":[0.0006394946,0.00017515403,0.00040125108,0.0040030284,0.00037454188,0.000115664276,0.00040187125,0.00031748213,0.00009838898],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044758958,0.00003367844,0.9480187,0.00016572603,0.00020823983,0.00040005904,0.00163581,0.00057941984,0.026540346,0.00021257493,0.0022078026,0.01954998],"study_design_scores_gemma":[0.0000018194334,0.000008638394,0.9980444,0.000008579265,0.000020376445,0.00006528607,0.00045200848,0.00013200543,0.00025812426,0.0000058552673,0.000998665,0.000004273555],"about_ca_topic_score_codex":0.97267735,"about_ca_topic_score_gemma":0.9861102,"teacher_disagreement_score":0.02732265,"about_ca_system_score_codex":0.008616143,"about_ca_system_score_gemma":0.00996689,"threshold_uncertainty_score":0.06251484},"labels":[],"label_agreement":null},{"id":"W2102419473","doi":"10.1128/jcm.38.3.1032-1035.2000","title":"Multiplex PCR for Detection of Genes for <i>Staphylococcus aureus</i> Enterotoxins, Exfoliative Toxins, Toxic Shock Syndrome Toxin 1, and Methicillin Resistance","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":690,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Microbiology; Staphylococcus aureus; Toxin; Toxic shock syndrome; Biology; Enterotoxin; Microbial toxins; Multiplex polymerase chain reaction; Micrococcaceae; Methicillin-resistant Staphylococcus aureus; Drug resistance; Gene; Polymerase chain reaction; Antibiotics; Antibacterial agent; Bacteria; Genetics","score_opus":0.04240504920504931,"score_gpt":0.35463954304944356,"score_spread":0.3122344938443943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102419473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6355238,0.0047944835,0.34500274,0.00034969655,0.000579332,0.0016574168,0.003080099,0.0017575182,0.0072549363],"genre_scores_gemma":[0.495459,0.0035810834,0.4791098,0.000441909,0.00020312224,0.0020918616,0.0050539575,0.00011117832,0.0139482645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986571,0.00024601174,0.00012415371,0.0004773927,0.00036423496,0.00013104531],"domain_scores_gemma":[0.9990482,0.0003705259,0.00016523279,0.000067646295,0.00022710259,0.0001213966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010183341,0.001139263,0.0009103709,0.0017046243,0.0002604833,0.0007029843,0.00047188564,0.0007275458,0.0017631408],"category_scores_gemma":[0.0017269999,0.000520363,0.0005048265,0.0007688752,0.00031581786,0.00052509387,0.000395154,0.000749854,0.0008564477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026238305,0.00019712455,0.0036090096,0.000121607634,0.000025227775,0.00010849075,0.000111387155,0.00024182902,0.9766251,0.00031894806,0.00039946206,0.017979356],"study_design_scores_gemma":[0.00008667276,0.002549762,0.012414342,0.000083692736,0.00014497233,0.0016454245,0.00012940723,0.012476874,0.9563921,0.0005382928,0.013474677,0.000063797954],"about_ca_topic_score_codex":0.00025327347,"about_ca_topic_score_gemma":0.0004494386,"teacher_disagreement_score":0.0017631408,"about_ca_system_score_codex":0.00039098872,"about_ca_system_score_gemma":0.00031870155,"threshold_uncertainty_score":0.005898297},"labels":[],"label_agreement":null},{"id":"W2102756698","doi":"10.1128/jcm.01103-09","title":"Design and Validation of Real-Time Reverse Transcription-PCR Assays for Detection of Pandemic (H1N1) 2009 Virus","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; University of Calgary; Provincial Laboratory of Public Health","funders":"","keywords":"Virus; Virology; Pandemic; Influenza A virus; Biology; Reverse transcription polymerase chain reaction; Orthomyxoviridae; Viral culture; Real-time polymerase chain reaction; Coronavirus disease 2019 (COVID-19); Medicine; Infectious disease (medical specialty); Gene; Genetics","score_opus":0.1516582009534972,"score_gpt":0.4384282464728495,"score_spread":0.2867700455193523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102756698","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.47079867,0.0032331224,0.5126026,0.00025670993,0.00067026075,0.0069080414,0.0016705715,0.0017200813,0.0021399145],"genre_scores_gemma":[0.25787488,0.0018262378,0.7221369,0.00041774742,0.0001818673,0.0099834185,0.005219336,0.00023434008,0.0021252315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9869753,0.0033016235,0.0015167125,0.0029608463,0.00435917,0.00088638504],"domain_scores_gemma":[0.99004805,0.0047240765,0.0010617775,0.00095475436,0.002921678,0.00028966475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010179891,0.0018838914,0.0020443674,0.001124385,0.00050843146,0.001598671,0.002286811,0.0016851536,0.00077540096],"category_scores_gemma":[0.011612731,0.0016674132,0.0015265071,0.0007894412,0.0016305596,0.0009260456,0.0006621643,0.0021606404,0.0010761203],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005348491,0.00049273885,0.0028898197,0.00027773104,0.000049239286,0.00007794625,0.0002807595,0.0018766792,0.98397344,0.0002903128,0.00014962305,0.009106694],"study_design_scores_gemma":[0.00012495335,0.0020227234,0.0041023092,0.000058251688,0.00013736638,0.00021241864,0.00009381958,0.014685724,0.9746824,0.00019807828,0.0036170452,0.00006494282],"about_ca_topic_score_codex":0.0009225009,"about_ca_topic_score_gemma":0.0014696653,"teacher_disagreement_score":0.010179891,"about_ca_system_score_codex":0.0014416559,"about_ca_system_score_gemma":0.001314913,"threshold_uncertainty_score":0.05383706},"labels":[],"label_agreement":null},{"id":"W2102942024","doi":"10.1128/jcm.39.2.716-719.2001","title":"Development of Monoclonal Antibodies Which Specifically Recognize<i>Entamoeba histolytica</i>in Preserved Stool Samples","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Entamoeba histolytica; Dispar; Giardia lamblia; Monoclonal antibody; Entamoeba; Microbiology; Biology; Entamoeba coli; Protozoa; Giardia; Recombinant DNA; Antibody; Virology; Immunology","score_opus":0.12606731498896173,"score_gpt":0.3935622056199537,"score_spread":0.26749489063099197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102942024","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9511229,0.0030810423,0.0411911,0.00034353454,0.00020955944,0.00033724908,0.0003799976,0.00027081504,0.0030637875],"genre_scores_gemma":[0.92758405,0.0040108175,0.062399883,0.00033634083,0.00010324761,0.0003123742,0.0020513285,0.000074531825,0.0031273447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997595,0.00003483858,0.00003419222,0.00004707249,0.00006150592,0.00006284427],"domain_scores_gemma":[0.9995245,0.00010216068,0.00009504929,0.00005823794,0.00016668501,0.000053389515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044793417,0.0004883387,0.00038233527,0.00035040252,0.00016260828,0.00036140654,0.00041645378,0.00045625478,0.0008794789],"category_scores_gemma":[0.0005581024,0.00033077525,0.00036248277,0.00019359749,0.0001724153,0.00025423153,0.00023748215,0.0007223271,0.0003660652],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034197143,0.000037257836,0.0002760461,0.000056515713,0.000008694218,0.000049818613,0.00001294774,0.00003800395,0.9963397,0.000044344215,0.00006749817,0.0030350552],"study_design_scores_gemma":[0.00007083354,0.00078123336,0.0036229594,0.000023130431,0.00012602984,0.0007288277,0.00003159394,0.0009472539,0.98764473,0.000058735506,0.0059570028,0.000007751589],"about_ca_topic_score_codex":0.00052144687,"about_ca_topic_score_gemma":0.00084736786,"teacher_disagreement_score":0.0008794789,"about_ca_system_score_codex":0.0002696804,"about_ca_system_score_gemma":0.00015851783,"threshold_uncertainty_score":0.0029420853},"labels":[],"label_agreement":null},{"id":"W2103021164","doi":"10.1128/jcm.39.3.1195-1196.2001","title":"Comparison of IsoCode STIX and FTA Gene Guard Collection Matrices as Whole-Blood Storage and Processing Devices for Diagnosis of Malaria by PCR","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Malaria; Biology; Virology; Whole blood; Medicine; Immunology","score_opus":0.05468838453268049,"score_gpt":0.418751059579578,"score_spread":0.3640626750468975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103021164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95458364,0.024694407,0.015329056,0.00093868456,0.0007830148,0.00035182512,0.0007515931,0.00018921493,0.002378504],"genre_scores_gemma":[0.9529723,0.0071482626,0.03641879,0.00057808374,0.0002122714,0.00029589332,0.0010655969,0.000088859975,0.001219874],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9781446,0.009606416,0.0013412476,0.0020847209,0.008313363,0.0005095471],"domain_scores_gemma":[0.97391677,0.018121634,0.0024433201,0.00090500194,0.0040136836,0.0005996268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010420089,0.0012241098,0.0009136908,0.0023025298,0.00043731442,0.0029985341,0.0014701133,0.0015378674,0.00086287083],"category_scores_gemma":[0.035992727,0.0009518085,0.000541599,0.0013157611,0.0011057467,0.0014272641,0.0007037025,0.00060431036,0.00048730682],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.061020836,0.0022031835,0.19560432,0.0056835897,0.0013554678,0.00089579326,0.004277548,0.005261366,0.31172055,0.0032386046,0.00501775,0.4037209],"study_design_scores_gemma":[0.0025200187,0.100043215,0.30022937,0.0016833532,0.0037942638,0.009648565,0.0032907135,0.045190983,0.4972532,0.002138957,0.03361239,0.00059501285],"about_ca_topic_score_codex":0.0013226407,"about_ca_topic_score_gemma":0.0019521049,"teacher_disagreement_score":0.010420089,"about_ca_system_score_codex":0.00074858416,"about_ca_system_score_gemma":0.00083741907,"threshold_uncertainty_score":0.055107355},"labels":[],"label_agreement":null},{"id":"W2103109655","doi":"10.1128/jcm.00844-08","title":"Internally Controlled Triplex Quantitative PCR Assay for Human Polyomaviruses JC and BK","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"TaqMan; Biology; Virology; JC virus; BK virus; Polymerase chain reaction; Molecular biology; Real-time polymerase chain reaction; Virus; Gene; Genetics; Progressive multifocal leukoencephalopathy","score_opus":0.13341358988774454,"score_gpt":0.44766924715994,"score_spread":0.31425565727219545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103109655","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06885234,0.0023451871,0.9131616,0.00021495127,0.0007462149,0.002287647,0.0027396658,0.0044398378,0.005212677],"genre_scores_gemma":[0.11701543,0.0022729256,0.8383246,0.0007276404,0.00035534336,0.008823505,0.010021973,0.0008808691,0.021577643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9830747,0.0038247446,0.0009615145,0.0054538273,0.0056023034,0.0010828481],"domain_scores_gemma":[0.99480754,0.0020282606,0.00052427343,0.0008680585,0.0014327016,0.00033923867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0054520513,0.0022809554,0.0027390162,0.00249227,0.00071679876,0.0018785158,0.0024604637,0.0026111966,0.006255675],"category_scores_gemma":[0.005364235,0.0012863067,0.0019472593,0.0016218562,0.0018246068,0.0013446016,0.0014903795,0.0039978833,0.0043248706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023001141,0.00024159992,0.0013614288,0.00041059573,0.000060765295,0.00006785411,0.0002642882,0.0005043851,0.9755696,0.0013544046,0.0012249962,0.01871],"study_design_scores_gemma":[0.00009974146,0.0012492511,0.00397945,0.00013278692,0.00020321854,0.0005619526,0.00009856957,0.009849632,0.9551287,0.0009395852,0.02763061,0.00012646665],"about_ca_topic_score_codex":0.0005323419,"about_ca_topic_score_gemma":0.0010440273,"teacher_disagreement_score":0.006255675,"about_ca_system_score_codex":0.0008973411,"about_ca_system_score_gemma":0.0013011098,"threshold_uncertainty_score":0.028833568},"labels":[],"label_agreement":null},{"id":"W2103122636","doi":"10.1128/jcm.42.2.867-870.2004","title":"Detection of the <i>Candida</i> Antigen Mannan in Cerebrospinal Fluid Specimens from Patients Suspected of Having <i>Candida</i> Meningitis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Meningitis; Cerebrospinal fluid; Mannan; Candida infections; Microbiology; Antigen; Medicine; Immunology; Biology; Pathology; Candida albicans; Surgery","score_opus":0.015346881992244281,"score_gpt":0.2770883215665082,"score_spread":0.26174143957426393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103122636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99881685,0.00035574034,0.00009362464,0.00006653642,0.00001224819,0.000011684596,0.000025974065,0.0000071697923,0.0006102262],"genre_scores_gemma":[0.99946445,0.00014661794,0.00020410042,0.00006373395,0.000019066416,0.0000041231424,0.000039060866,0.0000016757937,0.000057230107],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996685,0.00006139408,0.00006221008,0.000046640587,0.0000683261,0.00009300727],"domain_scores_gemma":[0.9994288,0.00018293445,0.00012723875,0.0000245342,0.00007987038,0.00015666042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024689318,0.00057496096,0.00034584536,0.0010101618,0.0008115612,0.0008134018,0.00019863843,0.00076505163,0.0008179445],"category_scores_gemma":[0.002345162,0.00038203067,0.00023234675,0.00034529006,0.00059688947,0.00034032195,0.0002677068,0.00058756175,0.00028033552],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013909666,0.00025632195,0.87229127,0.00018013066,0.00006913347,0.037188005,0.0018519851,0.00016033763,0.072512075,0.00010600642,0.00071097334,0.013282821],"study_design_scores_gemma":[0.00017485706,0.0031820568,0.7894072,0.00017501772,0.00024141207,0.15854532,0.0034163417,0.0011960131,0.04058769,0.0002518081,0.0027590326,0.00006323675],"about_ca_topic_score_codex":0.0020110407,"about_ca_topic_score_gemma":0.0012466373,"teacher_disagreement_score":0.0020110407,"about_ca_system_score_codex":0.00028545997,"about_ca_system_score_gemma":0.0002640102,"threshold_uncertainty_score":0.003998697},"labels":[],"label_agreement":null},{"id":"W2103524784","doi":"10.1128/jcm.01746-08","title":"Internal Control for Nucleic Acid Testing Based on the Use of Purified <i>Bacillus atrophaeus</i> subsp. <i>globigii</i> Spores","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Nucleic acid; Biology; Spore; DNA extraction; DNA; Multiplex; Plasmid; genomic DNA; Lysis; Polymerase chain reaction; Bacillus anthracis; Molecular biology; Chromatography; Microbiology; Bacteria; Biochemistry; Chemistry; Genetics; Gene","score_opus":0.08262121398105456,"score_gpt":0.3344156161072238,"score_spread":0.25179440212616927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103524784","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2835294,0.002647599,0.6971153,0.00042022462,0.0011231202,0.0017619202,0.001279109,0.0057854583,0.00633787],"genre_scores_gemma":[0.45799237,0.0015768184,0.5215475,0.0011272812,0.00023703625,0.0043647643,0.0045536268,0.0009590342,0.007641524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98536366,0.0027168111,0.0008473797,0.0059258896,0.0044877687,0.0006584899],"domain_scores_gemma":[0.995401,0.001405558,0.0010021388,0.0008252835,0.0011590072,0.0002070889],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039628837,0.0018609264,0.0010414202,0.0012311894,0.00054454483,0.0013473147,0.001346842,0.0014062753,0.0025380093],"category_scores_gemma":[0.0055797375,0.0008279399,0.00085741363,0.0010480687,0.002088316,0.00056844775,0.0011963026,0.0017476993,0.0013790946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011915534,0.00006525987,0.0006207291,0.000129835,0.000013649916,0.000030080391,0.00010477902,0.000097832686,0.99370027,0.0002546248,0.00023068924,0.0046331333],"study_design_scores_gemma":[0.000012945226,0.0002481152,0.0015537591,0.000026146809,0.000032003372,0.00013685715,0.000028016195,0.0016273499,0.9931867,0.00007361348,0.003058594,0.000016034399],"about_ca_topic_score_codex":0.0006908818,"about_ca_topic_score_gemma":0.0010430013,"teacher_disagreement_score":0.0039628837,"about_ca_system_score_codex":0.0008692357,"about_ca_system_score_gemma":0.0010946895,"threshold_uncertainty_score":0.020958006},"labels":[],"label_agreement":null},{"id":"W2103837794","doi":"10.1128/jcm.01289-10","title":"<i>Corynebacterium macginleyi</i> Conjunctivitis in Canada","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Erythromycin; Clindamycin; Corynebacterium; Microbiology; Biology; Medicine; Antibiotics; Bacteria; Genetics","score_opus":0.0101592559773678,"score_gpt":0.27454834217021784,"score_spread":0.26438908619285006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103837794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688738,0.0034241946,0.0005942337,0.003058147,0.00019076807,0.00009266683,0.0011981553,0.00011271482,0.02245524],"genre_scores_gemma":[0.9962746,0.0009329889,0.0002980243,0.00051962875,0.000021826132,0.0000043428536,0.00023342723,0.000015976306,0.0016991679],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9993444,0.0000268315,0.00002904679,0.00007578888,0.00022997863,0.00029395957],"domain_scores_gemma":[0.9991756,0.000029642684,0.00010606195,0.000018593593,0.00037976375,0.00029041176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016957932,0.00042916715,0.0002829363,0.0011708651,0.0042598993,0.0013719441,0.0006493568,0.00066028384,0.0028510115],"category_scores_gemma":[0.00083434535,0.00023960575,0.00027128728,0.0017892817,0.0008783864,0.00026672316,0.00073231704,0.00096446765,0.0003017497],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005073756,0.00024459668,0.83363146,0.00036230637,0.00010352945,0.0677737,0.0048708688,0.00074663403,0.015438055,0.0017928857,0.01625434,0.05827429],"study_design_scores_gemma":[0.0000803478,0.00031044992,0.8724718,0.00021421789,0.00012944231,0.07072654,0.013315568,0.0011929579,0.0059547806,0.0003377418,0.03513408,0.00013201108],"about_ca_topic_score_codex":0.98383325,"about_ca_topic_score_gemma":0.98820996,"teacher_disagreement_score":0.018430656,"about_ca_system_score_codex":0.018430656,"about_ca_system_score_gemma":0.027790444,"threshold_uncertainty_score":0.13372439},"labels":[],"label_agreement":null},{"id":"W2103909331","doi":"10.1128/jcm.42.5.2212-2215.2004","title":"Human Papillomavirus Type 16 Viral Load Is Higher in Human Immunodeficiency Virus-Seropositive Women with High-Grade Squamous Intraepithelial Lesions Than in Those with Normal Cytology Smears","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Université de Montréal; University of British Columbia; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Viral load; Viral disease; Cytology; Human papillomavirus; Papillomaviridae; Virus; Sida; Medicine; Virology; Immunology; Biology; Pathology; Cervical cancer; Internal medicine; Cancer","score_opus":0.04426405252703814,"score_gpt":0.38826526957010943,"score_spread":0.3440012170430713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103909331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993761,0.00027279227,0.000027434708,0.00002515172,0.0000076541655,0.0000019379504,0.000041199655,0.0000040518753,0.00024380848],"genre_scores_gemma":[0.99956554,0.00012237171,0.00003298138,0.000019030304,0.000011492792,0.0000017682464,0.000057696354,0.0000010020956,0.00018817071],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997814,0.000059880647,0.000022824986,0.000043562974,0.000041202846,0.000050986262],"domain_scores_gemma":[0.99887353,0.00044451308,0.00031327538,0.000052025673,0.00008123183,0.00023540207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030729978,0.00028917548,0.0003318011,0.00089313963,0.00042389365,0.00080557034,0.00016469724,0.00052416447,0.0027856473],"category_scores_gemma":[0.0028106489,0.00043943204,0.00017911574,0.00052007317,0.00049420405,0.00038401285,0.0003037222,0.0004341814,0.00047218218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017892884,0.000031120435,0.9968413,0.000011747053,0.000026079853,0.00016220329,0.00011079155,0.000012266004,0.0012463431,0.000008684372,0.000053707892,0.0013168867],"study_design_scores_gemma":[0.000009525699,0.00015643956,0.9978951,0.000005876268,0.000024796162,0.0011563762,0.00025768747,0.000064892585,0.00025055444,0.000029524848,0.00014570163,0.0000034112172],"about_ca_topic_score_codex":0.0013557703,"about_ca_topic_score_gemma":0.0015146148,"teacher_disagreement_score":0.0027856473,"about_ca_system_score_codex":0.00012210145,"about_ca_system_score_gemma":0.00013047771,"threshold_uncertainty_score":0.009318948},"labels":[],"label_agreement":null},{"id":"W2103938573","doi":"10.1128/jcm.05400-11","title":"Comparison of the Hybrid Capture 2 and cobas 4800 Tests for Detection of High-Risk Human Papillomavirus in Specimens Collected in PreservCyt Medium","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health","funders":"Alberta Innovates; Calgary Laboratory Services","keywords":"Ascus (bryozoa); Human papillomavirus; Cytology; Hybrid capture; Medicine; Kappa; Papillomaviridae; Gynecology; Genotyping; Roche Diagnostics; Confidence interval; Squamous intraepithelial lesion; Internal medicine; Cervical intraepithelial neoplasia; Genotype; Cervical cancer; Pathology; Biology; Cancer","score_opus":0.13350295051944674,"score_gpt":0.4442893230109001,"score_spread":0.31078637249145336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103938573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99268335,0.0010239272,0.0038307242,0.00004566209,0.000050934497,0.0000763025,0.00024151309,0.000055022196,0.0019926827],"genre_scores_gemma":[0.9928598,0.00028305958,0.0048964242,0.00011830405,0.000024813324,0.0001070021,0.00077439396,0.00002475159,0.0009114872],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98473155,0.0072778906,0.00088229135,0.0024971766,0.0039893966,0.0006217171],"domain_scores_gemma":[0.9756589,0.01559528,0.0019864724,0.0016443183,0.0045530777,0.00056198746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013335239,0.0008633104,0.00059261057,0.001987742,0.00037589757,0.0011631541,0.0009427161,0.001055493,0.00070963125],"category_scores_gemma":[0.014798973,0.00094787957,0.0007452655,0.0011252117,0.00076927204,0.00089437613,0.00081673305,0.00071742106,0.00067136704],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057610166,0.0003035304,0.9253113,0.0002573826,0.000806671,0.00018282517,0.0021851833,0.0013818655,0.04215059,0.00016857509,0.0005626269,0.020928368],"study_design_scores_gemma":[0.0001555766,0.0035885002,0.9531428,0.00006874886,0.00028486238,0.0011816447,0.0007687086,0.010166336,0.029091813,0.00014974175,0.0013235165,0.000077854085],"about_ca_topic_score_codex":0.004747862,"about_ca_topic_score_gemma":0.010547896,"teacher_disagreement_score":0.013335239,"about_ca_system_score_codex":0.0006932902,"about_ca_system_score_gemma":0.0005857995,"threshold_uncertainty_score":0.070524335},"labels":[],"label_agreement":null},{"id":"W2103974482","doi":"10.1128/jcm.06170-11","title":"Next-Generation Sequencing of Prostate Tumors Provides Independent Evidence of Xenotropic Murine Leukemia Virus-Related Gammaretrovirus Contamination","year":2011,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency; University of British Columbia","funders":"BC Cancer Agency; Canada's Michael Smith Genome Sciences Centre","keywords":"Gammaretrovirus; Virology; Contamination; Leukemia; Virus; Biology; Medicine; Cancer research; Murine leukemia virus; Immunology","score_opus":0.09357738781927634,"score_gpt":0.31930452381174174,"score_spread":0.2257271359924654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103974482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7161177,0.016730499,0.07939023,0.09772328,0.010730685,0.00030810732,0.0018140059,0.0011884936,0.07599704],"genre_scores_gemma":[0.9459051,0.004820197,0.011024757,0.027664842,0.0035767972,0.00006641355,0.00069287815,0.00010571268,0.0061433217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991141,0.00024994346,0.00008434897,0.00013958216,0.000283232,0.00012876901],"domain_scores_gemma":[0.9974874,0.0016080039,0.00021048947,0.00026823804,0.00031949556,0.000106383864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000852585,0.00033215116,0.00040354542,0.00036794174,0.00028991088,0.00070881436,0.00028473558,0.002266591,0.0017609624],"category_scores_gemma":[0.0034651717,0.0001386524,0.00019471155,0.00029318186,0.00040564436,0.00030178996,0.00019217013,0.0016953715,0.0013417618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026738094,0.000373541,0.07296677,0.0009404788,0.00015703733,0.15293333,0.0012901656,0.0007733154,0.47992676,0.008927023,0.066119336,0.21291845],"study_design_scores_gemma":[0.00017898683,0.0013903481,0.05232055,0.00027455154,0.0002511297,0.43167806,0.0008363688,0.009114363,0.23111378,0.007839085,0.26492497,0.00007788165],"about_ca_topic_score_codex":0.00021787033,"about_ca_topic_score_gemma":0.00039387456,"teacher_disagreement_score":0.002266591,"about_ca_system_score_codex":0.00030870162,"about_ca_system_score_gemma":0.00013424979,"threshold_uncertainty_score":0.005891025},"labels":[],"label_agreement":null},{"id":"W2104149925","doi":"10.1128/jcm.44.4.1283-1287.2006","title":"Follow-Up on Diagnostic Proficiency of Laboratories Equipped To Perform Orthopoxvirus Detection and Quantification by PCR: the Second International External Quality Assurance Study","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Faculty of Medicine Siriraj Hospital, Mahidol University; Statens Serum Institut; Russian Academy of Sciences; Rijksinstituut voor Volksgezondheid en Milieu; European Commission; Univerza v Ljubljani; Aristotle University of Thessaloniki; Health Canada; Robert Koch Institut; Mahidol University; Instituto de Salud Carlos III; KU Leuven","keywords":"Orthopoxvirus; Monkeypox; Virology; Genotyping; Vaccinia; Quality assurance; Medicine; Biology; External quality assessment; Genotype; Pathology; Gene; Genetics","score_opus":0.04184203961427145,"score_gpt":0.38218038040188146,"score_spread":0.34033834078761,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104149925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954522,0.00019673668,0.0018376715,0.00026700975,0.00003381465,0.00009135269,0.0002503774,0.000059222573,0.0018116215],"genre_scores_gemma":[0.99876404,0.000022565895,0.00028336397,0.000109598644,0.000013944059,0.00004003807,0.0003139435,0.000013999702,0.0004384974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9855775,0.005417107,0.0010956066,0.0021908015,0.0035266383,0.0021923545],"domain_scores_gemma":[0.8978972,0.030854767,0.02210574,0.012855737,0.03089939,0.005387133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.025320053,0.0007801842,0.0006299576,0.0017207551,0.001187548,0.0017334792,0.0010517793,0.0013074651,0.0012929376],"category_scores_gemma":[0.07425374,0.00047304668,0.00078729005,0.0010771449,0.0010566002,0.001677356,0.0018781993,0.0015824008,0.00067360094],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010121901,0.0005344491,0.9786968,0.00003475926,0.00006663636,0.0002997952,0.0024392721,0.00021840016,0.0028207654,0.00009424204,0.0006200164,0.01316279],"study_design_scores_gemma":[0.000042325984,0.0030115922,0.9855966,0.00002052067,0.0000804497,0.0004671352,0.0011182834,0.00080909394,0.0069126254,0.00008362383,0.001818159,0.000039480834],"about_ca_topic_score_codex":0.006020065,"about_ca_topic_score_gemma":0.0025849324,"teacher_disagreement_score":0.025320053,"about_ca_system_score_codex":0.0015991909,"about_ca_system_score_gemma":0.0010887261,"threshold_uncertainty_score":0.13390684},"labels":[],"label_agreement":null},{"id":"W2104210141","doi":"10.1128/jcm.02485-13","title":"Pathogens of Bovine Respiratory Disease in North American Feedlots Conferring Multidrug Resistance via Integrative Conjugative Elements","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Alberta Health Services; Agriculture and Agri-Food Canada","funders":"","keywords":"Pasteurella multocida; Bovine respiratory disease; Microbiology; Biology; Multiple drug resistance; Antibiotic resistance; Virology; Antimicrobial; Drug resistance; Bacteria; Antibiotics","score_opus":0.03465645737216105,"score_gpt":0.3594155820895696,"score_spread":0.32475912471740853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104210141","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99940896,0.000121866695,0.000095177085,0.000015157163,0.0000016582579,0.0000036435204,0.000054776297,0.0000029256025,0.0002958195],"genre_scores_gemma":[0.9990528,0.00014436922,0.0002619654,0.000030393636,0.0000034414973,0.0000035592009,0.0002302714,0.0000010763473,0.00027208135],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998425,0.000022688282,0.000008304804,0.000043487096,0.000036128895,0.000046810208],"domain_scores_gemma":[0.99973875,0.000044473178,0.00011622469,0.000015469634,0.000046235044,0.00003886937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020040594,0.00019544552,0.000116798765,0.00050365255,0.00053187076,0.0004710237,0.00015554391,0.00021558959,0.0005650661],"category_scores_gemma":[0.00031322558,0.00012132454,0.00007733039,0.0003347008,0.00016650776,0.00016344756,0.00015904577,0.00018893016,0.00008362449],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030729728,0.00009333444,0.91626406,0.000030196967,0.000021068821,0.0005443654,0.0009022207,0.00006885115,0.072845586,0.00005199919,0.00011958108,0.008751439],"study_design_scores_gemma":[0.000006239555,0.00010772748,0.995551,0.000009644522,0.00001426098,0.0007625848,0.0007422305,0.0001719954,0.0017225576,0.00001615959,0.0008926809,0.0000030052536],"about_ca_topic_score_codex":0.024315031,"about_ca_topic_score_gemma":0.06371046,"teacher_disagreement_score":0.97568494,"about_ca_system_score_codex":0.00056847214,"about_ca_system_score_gemma":0.00036041407,"threshold_uncertainty_score":0.048346996},"labels":[],"label_agreement":null},{"id":"W2104337605","doi":"10.1128/jcm.39.11.3962-3968.2001","title":"Characterization of <i>Salmonella</i> Associated with Pig Ear Dog Treats in Canada","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health","funders":"","keywords":"Serotype; Salmonella; Outbreak; Salmonella enterica; Pulsed-field gel electrophoresis; Biology; Microbiology; Phage typing; Typing; Virology; Veterinary medicine; Medicine; Bacteria; Genotype","score_opus":0.03772145615999417,"score_gpt":0.27343737162664866,"score_spread":0.2357159154666545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104337605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962172,0.00031570223,0.00029105775,0.000072174975,0.0000074713066,0.000045121775,0.00069860055,0.000016906117,0.0023358457],"genre_scores_gemma":[0.9958254,0.00052310614,0.00059596146,0.00009937428,0.000005093553,0.000008226739,0.0014403266,0.000009380806,0.0014931042],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995459,0.000013554937,0.000014626389,0.000058342026,0.0002391537,0.00012839207],"domain_scores_gemma":[0.99955314,0.000014081814,0.00008229268,0.000008604593,0.00022994925,0.00011181914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018814621,0.00030618437,0.0002296538,0.001313458,0.0014225744,0.00094209117,0.0005089636,0.0002716214,0.0008376481],"category_scores_gemma":[0.0004370602,0.00023069557,0.0002529173,0.001817784,0.0005940296,0.00014943618,0.000388998,0.00038311954,0.00016772455],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025602715,0.000095934774,0.9360323,0.0001153632,0.000041948628,0.0023959896,0.0016869302,0.00045927597,0.04522243,0.00016174864,0.0008715352,0.012660512],"study_design_scores_gemma":[0.0000038439625,0.00010439835,0.9917258,0.000014969676,0.000014227364,0.0006765468,0.001726954,0.0003263514,0.0025155,0.000011403935,0.002872123,0.0000079251195],"about_ca_topic_score_codex":0.9367714,"about_ca_topic_score_gemma":0.967616,"teacher_disagreement_score":0.06322861,"about_ca_system_score_codex":0.008263036,"about_ca_system_score_gemma":0.009883218,"threshold_uncertainty_score":0.12720191},"labels":[],"label_agreement":null},{"id":"W2104417772","doi":"10.1128/jcm.40.2.400-406.2002","title":"Identification of <i>Mycobacterium</i> spp. by Using a Commercial 16S Ribosomal DNA Sequencing Kit and Additional Sequencing Libraries","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":150,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Health Canada","funders":"ARUP Institute for Clinical and Experimental Pathology","keywords":"Ribosomal DNA; DNA sequencing; Biology; 16S ribosomal RNA; Ribosomal RNA; Identification (biology); Microbiology; Massive parallel sequencing; Polymerase chain reaction; DNA; Mycobacterium; Computational biology; Genetics; Bacteria; Gene; Phylogenetics","score_opus":0.08742884737767258,"score_gpt":0.34818577878803075,"score_spread":0.26075693141035816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104417772","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8376524,0.0031451122,0.13553406,0.0005903258,0.0003043601,0.0020748032,0.011122438,0.0024670053,0.0071094455],"genre_scores_gemma":[0.48944604,0.0036722124,0.4595741,0.00078092085,0.0002753936,0.0019383797,0.036979012,0.00058623916,0.0067475876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983841,0.00028646342,0.00030012752,0.0003535835,0.0005383179,0.00013740997],"domain_scores_gemma":[0.9982975,0.00040629756,0.00036567636,0.00030284945,0.00052056817,0.00010717533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013949455,0.0009090755,0.0010878915,0.0014364038,0.00045605196,0.00065228326,0.0007454147,0.00054590014,0.003618574],"category_scores_gemma":[0.0029100385,0.00034599277,0.0009070323,0.0011639505,0.00025751983,0.0005925306,0.0006016031,0.00042745456,0.0027456186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005277206,0.00039453324,0.008014058,0.0005955721,0.00004999988,0.00032798195,0.000105780215,0.00019088418,0.9392493,0.00013167171,0.0010130674,0.049399376],"study_design_scores_gemma":[0.00011520829,0.002244812,0.049826127,0.00011661847,0.00030362455,0.003311679,0.00017186755,0.0030165606,0.9219187,0.00029581148,0.018617429,0.00006162822],"about_ca_topic_score_codex":0.0008359581,"about_ca_topic_score_gemma":0.0018188814,"teacher_disagreement_score":0.003618574,"about_ca_system_score_codex":0.00031546605,"about_ca_system_score_gemma":0.0005100651,"threshold_uncertainty_score":0.012105346},"labels":[],"label_agreement":null},{"id":"W2104512296","doi":"10.1128/jcm.43.12.5873-5875.2005","title":"Use of Immunoglobulin G Avidity Assays for Differentiation of Primary from Previous Infections with West Nile Virus","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Saskatchewan Health","funders":"","keywords":"West Nile virus; Avidity; Virology; Antibody; Immunoglobulin M; Virus; Immunoglobulin G; Biology; Immunology","score_opus":0.04980598523160557,"score_gpt":0.3405798124654352,"score_spread":0.29077382723382966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104512296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9724764,0.0033785154,0.016150532,0.000062072446,0.00019192569,0.00038545756,0.0012262801,0.00031336938,0.0058152922],"genre_scores_gemma":[0.9731347,0.0019232127,0.01989059,0.00022285555,0.00010998827,0.000436511,0.0021610481,0.00004431705,0.002076848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99838746,0.00035746171,0.0001597565,0.0003950796,0.0004732666,0.00022711109],"domain_scores_gemma":[0.99835324,0.00060496555,0.00037584105,0.00012955577,0.00036997852,0.00016644446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017512601,0.0013235549,0.00077698386,0.0035115534,0.000333792,0.0005785426,0.000786294,0.0009500816,0.0013422999],"category_scores_gemma":[0.002994302,0.00036541073,0.00052286685,0.0013387469,0.0005321836,0.00044335032,0.00045191677,0.00073031645,0.00064119394],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030507713,0.0009469086,0.659972,0.00045858993,0.00024712775,0.0008885522,0.00053661806,0.0005534231,0.28115252,0.00019689089,0.0011720402,0.050824568],"study_design_scores_gemma":[0.00021826087,0.004558306,0.8738413,0.00010522156,0.00032616442,0.004492708,0.00027661843,0.0079993475,0.10317855,0.00036103005,0.0045840372,0.00005856719],"about_ca_topic_score_codex":0.0018630552,"about_ca_topic_score_gemma":0.0020054784,"teacher_disagreement_score":0.0035115534,"about_ca_system_score_codex":0.00032111586,"about_ca_system_score_gemma":0.00025390813,"threshold_uncertainty_score":0.009261668},"labels":[],"label_agreement":null},{"id":"W2104611201","doi":"10.1128/jcm.43.3.1456-1458.2005","title":"False-Positive <i>Histoplasma capsulatum</i> Gen-Probe Chemiluminescent Test Result Caused by a <i>Chrysosporium</i> Species","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Agriculture and Agri-Food Canada","funders":"","keywords":"Histoplasma capsulatum; Histoplasma; Biology; Microbiology; Chrysosporium; Histoplasmosis; Fungi imperfecti; Virology; Immunology; Botany","score_opus":0.02828046670036754,"score_gpt":0.3218378189744203,"score_spread":0.2935573522740528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104611201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95825255,0.0012869713,0.024286047,0.001955697,0.00034559963,0.000104910134,0.00007803422,0.0007423442,0.01294791],"genre_scores_gemma":[0.99380034,0.000265554,0.004572704,0.000584972,0.00008584791,0.000013472421,0.000049986807,0.000028413608,0.0005986396],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9988613,0.00028759064,0.00013335515,0.00021138227,0.00025679666,0.0002494952],"domain_scores_gemma":[0.9967788,0.0018765192,0.0005323844,0.00030217366,0.00025143157,0.00025872127],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010922952,0.0011262,0.00034052233,0.00073670055,0.0005873221,0.0005444395,0.0007911217,0.001954741,0.0020874138],"category_scores_gemma":[0.003940414,0.00045918248,0.00052519824,0.00022957937,0.0014219079,0.0005723117,0.000476334,0.0015499693,0.0010921],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007881541,0.00023982525,0.085983954,0.00039398478,0.000063191415,0.7584215,0.0010279908,0.0002722614,0.13620767,0.00095459557,0.0022592086,0.013387673],"study_design_scores_gemma":[0.000038127724,0.0004185727,0.017307166,0.000037173846,0.000107352316,0.8516974,0.00029831706,0.0018881309,0.12492183,0.00041386642,0.0028525442,0.000019506691],"about_ca_topic_score_codex":0.00078078365,"about_ca_topic_score_gemma":0.0007232757,"teacher_disagreement_score":0.0020874138,"about_ca_system_score_codex":0.00034974175,"about_ca_system_score_gemma":0.00014000031,"threshold_uncertainty_score":0.0069831014},"labels":[],"label_agreement":null},{"id":"W2104738456","doi":"10.1128/jcm.40.8.3071-3075.2002","title":"Corneal Ulcer Caused by the New Fungal Species<i>Sarcopodium oculorum</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Ocular Infections and Treatments","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agriculture and Agri-Food Canada","keywords":"Natamycin; corneal ulcer; Ketoconazole; Fluconazole; Fungal keratitis; Fungus; Microbiology; Biology; Keratitis; Mycosis; Hypha; Itraconazole; Flucytosine; Antifungal; Conidium; Dermatology; Medicine; Botany; Immunology","score_opus":0.05790504619141279,"score_gpt":0.3423661106131804,"score_spread":0.2844610644217676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104738456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99233294,0.0041693454,0.0006068882,0.00035667623,0.00003840193,0.000023148254,0.000029928084,0.000023400265,0.0024192473],"genre_scores_gemma":[0.9969121,0.001598942,0.00070788315,0.00031711298,0.00009063405,0.0000046836362,0.000040743183,0.0000045434863,0.0003233644],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997819,0.000027577848,0.000027274938,0.000040337778,0.000039405233,0.00008346266],"domain_scores_gemma":[0.99935275,0.00012820271,0.00030576222,0.000041625295,0.00003950543,0.00013204543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014846498,0.00068152725,0.0003354408,0.00037370884,0.0007090769,0.00049058866,0.00027135116,0.00090561213,0.0008236635],"category_scores_gemma":[0.00068853656,0.00028089198,0.00041277765,0.00029590604,0.00074408785,0.0003587939,0.00046936446,0.0006990387,0.00024744298],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002351006,0.00014395759,0.14423057,0.00023051222,0.000060996364,0.8115321,0.00069016335,0.00010134567,0.02802092,0.00021865794,0.00064453424,0.013891132],"study_design_scores_gemma":[0.00003728321,0.00042065734,0.05800159,0.000029119385,0.000062926374,0.93452954,0.00041027652,0.00022764671,0.003747398,0.000065252054,0.0024591251,0.000009110402],"about_ca_topic_score_codex":0.0016710757,"about_ca_topic_score_gemma":0.002981661,"teacher_disagreement_score":0.0016710757,"about_ca_system_score_codex":0.00026926087,"about_ca_system_score_gemma":0.00016296374,"threshold_uncertainty_score":0.0033227205},"labels":[],"label_agreement":null},{"id":"W2104776101","doi":"10.1128/jcm.39.6.2043-2049.2001","title":"Sorbitol-Fermenting Shiga Toxin-Producing <i>Escherichia coli</i> O157:H <sup>−</sup> Strains: Epidemiology, Phenotypic and Molecular Characteristics, and Microbiological Diagnosis","year":2001,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":188,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Health Canada; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Shiga toxin; Escherichia coli; Microbiology; Shiga-like toxin; Pathogen; Biology; Enterobacteriaceae; STX2; Toxin; Diarrhea; Virology; Medicine; Genetics; Gene; Gastroenterology","score_opus":0.08777588174698221,"score_gpt":0.4010803384271982,"score_spread":0.313304456680216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104776101","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003831143,0.9972894,0.00045187122,0.00019264949,0.00023328025,0.000005194482,0.000014708108,0.000011770852,0.0014180855],"genre_scores_gemma":[0.0013840691,0.99630946,0.0005111388,0.00014766218,0.00018623042,0.0000076240076,0.000039941802,0.0000018895504,0.0014120473],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99983716,0.000025702338,0.000022859915,0.00003357246,0.00006892032,0.0000117792115],"domain_scores_gemma":[0.99978644,0.00006713553,0.00003594668,0.000009531428,0.00007438146,0.000026494225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041575986,0.0007722449,0.0009394828,0.0014855936,0.00019091509,0.0008228598,0.0007460343,0.00079921953,0.0017771376],"category_scores_gemma":[0.00044706414,0.00021957308,0.00018303975,0.0021921915,0.00041840386,0.001005208,0.00032620804,0.000784903,0.0036931406],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008559539,0.00005944986,0.00025048383,0.005120109,0.00001960441,0.00024727915,0.00003627179,0.00019575834,0.004649141,0.0010370045,0.012205472,0.9760938],"study_design_scores_gemma":[0.000016980503,0.00016787548,0.0015814345,0.0012360526,0.000055270306,0.0028745788,0.00007345507,0.000073935866,0.0023451624,0.0013422222,0.99021906,0.000013985961],"about_ca_topic_score_codex":0.0007041922,"about_ca_topic_score_gemma":0.0012988417,"teacher_disagreement_score":0.0017771376,"about_ca_system_score_codex":0.00035639087,"about_ca_system_score_gemma":0.00062040816,"threshold_uncertainty_score":0.005945146},"labels":[],"label_agreement":null},{"id":"W2104808759","doi":"10.1128/jcm.01767-09","title":"Aspergillus PCR: One Step Closer to Standardization","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":293,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Università degli Studi di Verona; Radboud Universiteit; Università degli Studi di Padova; Univerzita Karlova v Praze; Cardiff University; Hospital for Sick Children","keywords":"Aspergillosis; Aspergillus; Polymerase chain reaction; Standardization; DNA extraction; Biology; Medicine; Microbiology; Computer science; Immunology; Genetics","score_opus":0.04801403930777186,"score_gpt":0.4015632375150168,"score_spread":0.35354919820724495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104808759","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057690544,0.15965629,0.30381313,0.47377944,0.04016048,0.001957582,0.00092154107,0.0028383946,0.01110403],"genre_scores_gemma":[0.058452085,0.057132423,0.6619923,0.18561436,0.024424734,0.0040575224,0.0014042696,0.002322677,0.0045995363],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.5693659,0.32204401,0.032351546,0.019057069,0.05410163,0.0030797934],"domain_scores_gemma":[0.34941968,0.41610473,0.023011057,0.092837386,0.10993207,0.008695103],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.4674667,0.0039583896,0.010615342,0.010807228,0.0026025863,0.026950017,0.010112234,0.01205963,0.0051699425],"category_scores_gemma":[0.49310154,0.0025921836,0.007400993,0.0091034975,0.022150958,0.028710216,0.016885465,0.03664929,0.004070569],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009002521,0.00063077157,0.01040225,0.0147084845,0.0039591,0.00071816257,0.00998615,0.0030202575,0.0032951843,0.20216392,0.15407272,0.5961428],"study_design_scores_gemma":[0.0005974912,0.0014288161,0.008564473,0.022126814,0.0013704586,0.00094786007,0.0041341665,0.0038784398,0.004232593,0.41564938,0.5364246,0.00064494787],"about_ca_topic_score_codex":0.003906252,"about_ca_topic_score_gemma":0.0019101197,"teacher_disagreement_score":0.4674667,"about_ca_system_score_codex":0.008725775,"about_ca_system_score_gemma":0.0235977,"threshold_uncertainty_score":0.65670836},"labels":[],"label_agreement":null},{"id":"W2104934636","doi":"10.1128/jcm.00659-10","title":"Improved Identification of Epidemiologically Related Strains of <i>Salmonella enterica</i> by use of a Fusion Algorithm Based on Pulsed-Field Gel Electrophoresis and Multiple-Locus Variable-Number Tandem-Repeat Analysis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Multiple Loci VNTR Analysis; Pulsed-field gel electrophoresis; Variable number tandem repeat; Biology; Genetics; DNA profiling; Salmonella enterica; Computational biology; Salmonella; Genotype","score_opus":0.021988566501056156,"score_gpt":0.2898457658965808,"score_spread":0.26785719939552466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104934636","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.39094466,0.00018477961,0.6060786,0.00012301993,0.000026528816,0.00009552046,0.00017866277,0.0017243323,0.00064391724],"genre_scores_gemma":[0.37803528,0.00005405291,0.62077624,0.000044439734,0.000009500147,0.000053191252,0.0006112163,0.00007613498,0.00033992878],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886864,0.00030079822,0.00012379843,0.00034995947,0.00027031143,0.00008643604],"domain_scores_gemma":[0.99706084,0.0011819956,0.00052285753,0.00022430441,0.00090128777,0.00010870781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023025637,0.0008442111,0.0010030513,0.0019558615,0.00038803078,0.0012001107,0.0006311938,0.00086172466,0.00048574165],"category_scores_gemma":[0.0057915663,0.00028838392,0.0010772024,0.0012447846,0.00037556278,0.001042103,0.00084816036,0.0007684643,0.00040962544],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090753677,0.00067603716,0.08579978,0.00025493238,0.00031688472,0.00019076535,0.0006165867,0.07277075,0.23023942,0.0020513218,0.0013180112,0.6048579],"study_design_scores_gemma":[0.000046558598,0.00034518552,0.034467977,0.000022814118,0.000101532656,0.00068324053,0.00018418884,0.896327,0.0647913,0.0014139256,0.0015242904,0.000091978865],"about_ca_topic_score_codex":0.0025589545,"about_ca_topic_score_gemma":0.0014414103,"teacher_disagreement_score":0.0025589545,"about_ca_system_score_codex":0.00045758477,"about_ca_system_score_gemma":0.0007137872,"threshold_uncertainty_score":0.012177229},"labels":[],"label_agreement":null},{"id":"W2105048698","doi":"10.1128/jcm.02105-07","title":"Population Structure of Invasive and Colonizing Strains of <i>Streptococcus agalactiae</i> from Neonates of Six U.S. Academic Centers from 1995 to 1999","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institutes of Health; Thrasher Research Fund","keywords":"Serotype; Multilocus sequence typing; Biology; Streptococcus agalactiae; Population; Typing; Microbiology; Virology; Group B; Lineage (genetic); Molecular epidemiology; Streptococcus; Genotype; Genetics; Bacteria; Gene; Medicine","score_opus":0.039538328408798194,"score_gpt":0.3415632869633696,"score_spread":0.3020249585545714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105048698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99974495,0.000067295434,0.000046160872,0.000010320797,7.036343e-7,0.0000030810372,0.00008046171,0.0000017431717,0.000045300218],"genre_scores_gemma":[0.9991357,0.00011308103,0.00021623331,0.000028977784,0.000004485448,0.0000069734892,0.00040158164,0.0000023732805,0.00009063598],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99959713,0.000072974275,0.00004127783,0.00011823338,0.00009730167,0.00007312106],"domain_scores_gemma":[0.9991066,0.00010453444,0.0003138135,0.000048941998,0.0002451926,0.00018079941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005318619,0.00027639445,0.00030222794,0.00073380535,0.000440368,0.0005250819,0.0003676283,0.00026241166,0.00043553155],"category_scores_gemma":[0.0017822456,0.00019086593,0.00015104207,0.00062264135,0.00029344304,0.00026817585,0.0004656869,0.00032582576,0.0001298207],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039099228,0.000012217158,0.9953442,0.0000051067304,0.000009701209,0.000109111344,0.000537484,0.000052822306,0.0011654131,0.000011069349,0.00009177658,0.002622022],"study_design_scores_gemma":[0.0000039579536,0.000100633086,0.99704957,0.0000096669355,0.000012135652,0.00056124665,0.0010937321,0.00031352058,0.0005289084,0.00001220166,0.00030905992,0.000005463575],"about_ca_topic_score_codex":0.030296845,"about_ca_topic_score_gemma":0.035113458,"teacher_disagreement_score":0.030296845,"about_ca_system_score_codex":0.001047185,"about_ca_system_score_gemma":0.00057073846,"threshold_uncertainty_score":0.060240984},"labels":[],"label_agreement":null},{"id":"W2105356175","doi":"10.1128/jcm.01694-13","title":"Utility of Specimens Positive for Neisseria gonorrhoeae by the Aptima Combo 2 Assay for Assessment of Strain Diversity and Antibiotic Resistance","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Alberta; Provincial Laboratory of Public Health","funders":"","keywords":"Neisseria gonorrhoeae; Typing; Biology; Nucleic Acid Amplification Tests; Microbiology; Cephalosporin; Virology; Antibiotics","score_opus":0.07131083642229283,"score_gpt":0.40098527539193857,"score_spread":0.32967443896964577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105356175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99008685,0.0014004487,0.0042532426,0.000052200277,0.000035606696,0.0003441475,0.0006715843,0.00004694337,0.0031089757],"genre_scores_gemma":[0.9861027,0.0007304588,0.011764681,0.000082254715,0.00003210119,0.00015103153,0.0006284359,0.0000107697215,0.000497618],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99744934,0.00088031,0.00036642436,0.00028324613,0.0008160235,0.00020453605],"domain_scores_gemma":[0.9967932,0.0010032423,0.00074405124,0.00024341757,0.0009098406,0.00030617186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002922159,0.00070561905,0.0006962051,0.0026501566,0.00046697626,0.0007002422,0.0005336898,0.0006496858,0.00077744457],"category_scores_gemma":[0.004541173,0.00039658084,0.00034168622,0.0012102657,0.0005255788,0.0005246038,0.00056112674,0.0003456924,0.00033140212],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011943916,0.00033823075,0.8123464,0.0001877906,0.00010133383,0.0021577948,0.0011221272,0.0002916659,0.16266015,0.00009446686,0.000200681,0.019304916],"study_design_scores_gemma":[0.00003996702,0.0020739366,0.9412873,0.00010209957,0.0001431202,0.0060034413,0.0012497946,0.0034479466,0.043705605,0.00011162199,0.0017933565,0.000041852818],"about_ca_topic_score_codex":0.0029415707,"about_ca_topic_score_gemma":0.00448897,"teacher_disagreement_score":0.0029415707,"about_ca_system_score_codex":0.00020139803,"about_ca_system_score_gemma":0.00040969808,"threshold_uncertainty_score":0.015454054},"labels":[],"label_agreement":null},{"id":"W2105364330","doi":"10.1128/jcm.42.10.4679-4685.2004","title":"Evaluation and Validation of Real-Time Reverse Transcription-PCR Assay Using the LightCycler System for Detection and Quantitation of Norovirus","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health","funders":"Centers for Disease Control and Prevention; Children's Hospital Foundation; Stollery Children’s Hospital Foundation","keywords":"Norovirus; Biology; Real-time polymerase chain reaction; Reverse transcription polymerase chain reaction; Reverse transcriptase; Virology; Molecular biology; Chromatography; Polymerase chain reaction; Chemistry; Genetics; Gene; Virus; Gene expression","score_opus":0.125963491978183,"score_gpt":0.4375678231620493,"score_spread":0.3116043311838663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105364330","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2548154,0.0035466067,0.7318217,0.00024147706,0.0010003378,0.0037073812,0.00097176986,0.0014633201,0.0024319908],"genre_scores_gemma":[0.17378801,0.0023671924,0.80818945,0.0003277696,0.00027059813,0.0077899126,0.0037237953,0.0003983003,0.0031449622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9648675,0.011672624,0.003038766,0.0058089723,0.013413018,0.0011992718],"domain_scores_gemma":[0.9819464,0.007527016,0.0010395338,0.0023772574,0.0068264045,0.00028335542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.027372831,0.0028745856,0.0029075725,0.0022265075,0.0008423831,0.0022435423,0.0030758257,0.0021120955,0.0011310455],"category_scores_gemma":[0.017632054,0.0021528495,0.0015865746,0.0015695967,0.0024745467,0.0013389629,0.0012781085,0.0025583142,0.0016492152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005510789,0.00051347486,0.0048834826,0.0005417178,0.000079933714,0.00011177209,0.00062833325,0.0015531107,0.97344625,0.0005008857,0.00020212114,0.016987817],"study_design_scores_gemma":[0.00015947495,0.0027139054,0.0076375958,0.00017434687,0.0002694459,0.00036034192,0.00014565769,0.029548965,0.9501133,0.00034992612,0.00841273,0.000114359755],"about_ca_topic_score_codex":0.0016649828,"about_ca_topic_score_gemma":0.002836817,"teacher_disagreement_score":0.027372831,"about_ca_system_score_codex":0.0014282791,"about_ca_system_score_gemma":0.00206525,"threshold_uncertainty_score":0.14476311},"labels":[],"label_agreement":null},{"id":"W2105437123","doi":"10.1128/jcm.00842-13","title":"Intraventricular Hemorrhage and Multiple Intracranial Cysts Associated with Congenital Cytomegalovirus Infection","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; University of Calgary","funders":"","keywords":"Cytomegalovirus; Betaherpesvirinae; Medicine; Intraventricular hemorrhage; Subependymal zone; Human cytomegalovirus; Pathology; Herpesviridae; Viral disease; Virology; Virus; Biology; Pregnancy","score_opus":0.03077136202314275,"score_gpt":0.32928093329181335,"score_spread":0.2985095712686706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105437123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99227226,0.0023818084,0.0007093474,0.0004201266,0.00009215087,0.000041385872,0.000113779315,0.000058791295,0.0039103846],"genre_scores_gemma":[0.9982267,0.0006952723,0.00043503882,0.00008376573,0.00023453883,0.000008627268,0.000051999814,0.000009066961,0.00025496926],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9992705,0.00007900839,0.00008920582,0.00011710674,0.00017017202,0.00027394827],"domain_scores_gemma":[0.99736387,0.00094162714,0.00068148266,0.00020830978,0.00010935985,0.00069530524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034563473,0.001098382,0.000917706,0.0023983023,0.001170335,0.0009813005,0.0009379909,0.0024300413,0.0017878507],"category_scores_gemma":[0.0042519234,0.0008634935,0.0005609425,0.0010642126,0.0018205323,0.0009824688,0.001642557,0.002429179,0.00034841205],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049007784,0.000023009214,0.01704102,0.000024089912,0.000008341329,0.98035645,0.00008757571,0.000039053564,0.0009763452,0.00010486169,0.00009485858,0.0011954096],"study_design_scores_gemma":[0.000008999967,0.000037105063,0.010589017,0.000009323316,0.000009885887,0.98863095,0.000057280125,0.00007685884,0.00041206385,0.00006221572,0.000099155215,0.000006995438],"about_ca_topic_score_codex":0.0033395377,"about_ca_topic_score_gemma":0.0031791844,"teacher_disagreement_score":0.0033395377,"about_ca_system_score_codex":0.0007321262,"about_ca_system_score_gemma":0.0010766971,"threshold_uncertainty_score":0.006640196},"labels":[],"label_agreement":null},{"id":"W2105523982","doi":"10.1128/jcm.41.7.3246-3251.2003","title":"Real-Time PCR Assay for Detection of Fluoroquinolone Resistance Associated with <i>grlA</i> Mutations in <i>Staphylococcus aureus</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Staphylococcus aureus; Microbiology; Micrococcaceae; Staphylococcal infections; Staphylococcus; Medicine; Bacteria; Biology; Genetics","score_opus":0.02611325110087909,"score_gpt":0.3253658619373346,"score_spread":0.2992526108364555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105523982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.62895525,0.0056427238,0.35369217,0.0006773742,0.0006242141,0.0008706337,0.0012764225,0.0020680618,0.0061932127],"genre_scores_gemma":[0.6439071,0.0026487075,0.34440628,0.00055589864,0.00016190262,0.0008923244,0.0027832785,0.00014100563,0.004503464],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976108,0.0008537098,0.00020024792,0.0006078666,0.0005549995,0.00017231102],"domain_scores_gemma":[0.99787295,0.001067376,0.00043896984,0.00012585384,0.00040271264,0.000092219256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013628127,0.00104458,0.0006250717,0.0011424952,0.0001944179,0.0006409636,0.0006339215,0.00091926235,0.0013538644],"category_scores_gemma":[0.0026441591,0.00054818,0.0006009008,0.00039728294,0.00058000576,0.0005362848,0.000330821,0.0010170295,0.0009987573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016632711,0.00012225375,0.0021573578,0.00012368671,0.000015262327,0.000110882946,0.0001001507,0.00020093363,0.9878627,0.00017334087,0.00017873656,0.008788318],"study_design_scores_gemma":[0.00007324095,0.0015630304,0.009240508,0.00008534608,0.000107592365,0.0014617561,0.00014012896,0.011108323,0.96898603,0.00026800574,0.0069087627,0.000057304063],"about_ca_topic_score_codex":0.00022800046,"about_ca_topic_score_gemma":0.00037585848,"teacher_disagreement_score":0.0013628127,"about_ca_system_score_codex":0.00034186427,"about_ca_system_score_gemma":0.00040092968,"threshold_uncertainty_score":0.007207334},"labels":[],"label_agreement":null},{"id":"W2105574566","doi":"10.1128/jcm.44.3.783-789.2006","title":"Isolation of the Genome Sequence Strain<i>Mycobacterium avium</i>104 from Multiple Patients over a 17-Year Period","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Biology; Genotyping; Genotype; Typing; Whole genome sequencing; Strain (injury); Genome; Mycobacterium; Insertion sequence; Genetics; Pathogen; Paratuberculosis; Microbiology; Multilocus sequence typing; Virology; Gene; Transposable element; Bacteria","score_opus":0.03645613157404688,"score_gpt":0.3361139499286707,"score_spread":0.29965781835462385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105574566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99867356,0.00014422016,0.00025076617,0.0000825571,0.00000681139,0.000023870003,0.0004342725,0.000008508101,0.00037553074],"genre_scores_gemma":[0.99546045,0.00027779018,0.0014599416,0.0001243464,0.000032449672,0.000030363586,0.0019896033,0.000013140595,0.0006119471],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99985695,0.000015199617,0.000011740225,0.000045665416,0.000043156833,0.000027375285],"domain_scores_gemma":[0.9997352,0.00005277994,0.00006892736,0.000031992662,0.000051338564,0.000059822167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011129221,0.00019909408,0.00022030786,0.00049806683,0.00049498124,0.00036993437,0.00015749647,0.0002930128,0.00092365564],"category_scores_gemma":[0.0007581822,0.00019085484,0.00017536092,0.00048277611,0.00019125087,0.00018665438,0.00027330886,0.0005595234,0.0003967764],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004652741,0.00024611322,0.84643567,0.00006470157,0.00007157646,0.005312531,0.0013683217,0.00023195022,0.11534267,0.00009514498,0.0016118885,0.028754089],"study_design_scores_gemma":[0.000037838883,0.000597636,0.9667956,0.000016709197,0.000066869805,0.015491071,0.00073696347,0.0004634236,0.0077277715,0.000036355235,0.008015845,0.000013980895],"about_ca_topic_score_codex":0.0048997714,"about_ca_topic_score_gemma":0.004603212,"teacher_disagreement_score":0.0048997714,"about_ca_system_score_codex":0.00030254218,"about_ca_system_score_gemma":0.0002491565,"threshold_uncertainty_score":0.009742498},"labels":[],"label_agreement":null},{"id":"W2105620619","doi":"10.1128/jcm.00739-12","title":"Factors Influencing the Sensitivity and Specificity of Conventional Sequencing in Human Immunodeficiency Virus Type 1 Tropism Testing","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; AIDS Vancouver","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Tropism; Maraviroc; Biology; Population; Tissue tropism; Deep sequencing; Virology; V3 loop; Viral load; DNA sequencing; Virus; Genetics; Human immunodeficiency virus (HIV); DNA; Medicine; Gene; Genome; Peptide sequence","score_opus":0.14833966486014272,"score_gpt":0.382805715577072,"score_spread":0.23446605071692928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105620619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9416536,0.008843809,0.044625014,0.0004250564,0.00014401285,0.00024027807,0.0004633272,0.00026655014,0.003338265],"genre_scores_gemma":[0.97808903,0.0006058043,0.020007012,0.0004183988,0.000043125125,0.00008599215,0.0003356292,0.0000445301,0.00037042267],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9667176,0.019066054,0.0022514258,0.0047573196,0.0063701784,0.00083733816],"domain_scores_gemma":[0.9030322,0.08451752,0.004805474,0.0029372037,0.0039801467,0.00072752254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.035055764,0.00087073486,0.0008814067,0.0009592916,0.00034443082,0.0018729754,0.0008396363,0.0016059108,0.00056157564],"category_scores_gemma":[0.0736215,0.0007431464,0.00045353643,0.00069910364,0.0016500666,0.0009409824,0.00074287446,0.0012274589,0.00049654447],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00312312,0.00023032635,0.75738907,0.00074466347,0.0006504542,0.0004776047,0.0011708623,0.009712192,0.14891134,0.0007916608,0.0010168205,0.07578194],"study_design_scores_gemma":[0.00013932436,0.0051942067,0.6212798,0.00045188388,0.0008429101,0.0071666385,0.00048785243,0.10467889,0.24995917,0.0035323943,0.0061112554,0.00015563938],"about_ca_topic_score_codex":0.00091168337,"about_ca_topic_score_gemma":0.0027400558,"teacher_disagreement_score":0.035055764,"about_ca_system_score_codex":0.0004507371,"about_ca_system_score_gemma":0.0003590281,"threshold_uncertainty_score":0.18539488},"labels":[],"label_agreement":null},{"id":"W2105684364","doi":"10.1128/jcm.38.6.2392-2394.2000","title":"Molecular Characterization of the <i>vanD</i> Gene Cluster and a Novel Insertion Element in a Vancomycin-Resistant Enterococcus Isolated in Canada","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto General Hospital; University of Toronto; Canadian Science Centre for Human and Animal Health; Health Canada","funders":"","keywords":"Operon; Insertion sequence; Frameshift mutation; Biology; Enterococcus faecium; Molecular biology; Gene; Genetics; Gene cluster; Microbiology; Escherichia coli; Mutation; Transposable element; Bacteria; Mutant","score_opus":0.013305749346101702,"score_gpt":0.2798989573878368,"score_spread":0.26659320804173514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105684364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99659985,0.0002262386,0.0006014792,0.00007628569,0.0000074534983,0.000038107268,0.0010435231,0.00001234795,0.0013947791],"genre_scores_gemma":[0.98691106,0.00030454155,0.0032706568,0.00009364035,0.0000069070993,0.000028690958,0.0052252864,0.000026871201,0.004132343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996892,0.000009242637,0.000016363438,0.000046762343,0.00014766415,0.00009084581],"domain_scores_gemma":[0.99965215,0.000029556984,0.00006653163,0.000019564199,0.00013703319,0.00009524674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010850831,0.00033848954,0.00040805672,0.0006107713,0.00045881714,0.0006763496,0.0003841624,0.00032471682,0.0006199474],"category_scores_gemma":[0.00043101417,0.00022554082,0.0003597927,0.00084643386,0.00031759235,0.00012448778,0.0003930029,0.0005395812,0.0003776251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001474078,0.000049238213,0.008210703,0.000046139507,0.000010291248,0.00049749686,0.00023655045,0.00006804192,0.98806506,0.00009712335,0.0000668627,0.0025051786],"study_design_scores_gemma":[0.000067920366,0.0006668335,0.58267885,0.00008167476,0.00010284719,0.005755422,0.0025136506,0.0016066757,0.3930016,0.00013602902,0.013326686,0.000061754145],"about_ca_topic_score_codex":0.2434837,"about_ca_topic_score_gemma":0.30446088,"teacher_disagreement_score":0.7565163,"about_ca_system_score_codex":0.0018869613,"about_ca_system_score_gemma":0.0022992098,"threshold_uncertainty_score":0.484133},"labels":[],"label_agreement":null},{"id":"W2105725017","doi":"10.1128/jcm.40.2.575-583.2002","title":"Development and Evaluation of Real-Time PCR-Based Fluorescence Assays for Detection of <i>Chlamydia</i> <i>pneumoniae</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Columbia College","funders":"","keywords":"TaqMan; Chlamydophila pneumoniae; Chlamydiaceae; Biology; Chlamydia; Microbiology; Polymerase chain reaction; Nested polymerase chain reaction; Molecular biology; Virology; Real-time polymerase chain reaction; Taq polymerase; Serotype; 16S ribosomal RNA; Chlamydia trachomatis; Gene; Immunology; Genetics","score_opus":0.10018175686513241,"score_gpt":0.37933534561493093,"score_spread":0.2791535887497985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105725017","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8137764,0.0025146713,0.17957155,0.000116564166,0.00016698908,0.0009426124,0.0007548422,0.00041005827,0.0017464054],"genre_scores_gemma":[0.60609066,0.0015041527,0.38607097,0.00016470253,0.0000657683,0.002110689,0.0021891147,0.00006689555,0.001737142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9944975,0.002026366,0.0005532411,0.0012301883,0.0013418224,0.00035089263],"domain_scores_gemma":[0.99655294,0.0015491591,0.0005257079,0.00035199852,0.00089896814,0.00012128039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0043337685,0.0010718579,0.0008294707,0.00087649684,0.00024264822,0.0008847775,0.0010640216,0.0009055121,0.00045984212],"category_scores_gemma":[0.0055902195,0.00063577114,0.0005697314,0.0005475158,0.0007410376,0.0004153069,0.00044352634,0.000557091,0.00038222375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005915246,0.00020051737,0.007624217,0.00022441123,0.00003560243,0.0000747689,0.00014779711,0.0010748353,0.9752588,0.00015752001,0.000066826404,0.014543199],"study_design_scores_gemma":[0.00013139767,0.0031847449,0.01651734,0.000046605957,0.00013569919,0.00056197704,0.0001288798,0.012327129,0.96383035,0.00014069203,0.0029356037,0.000059431408],"about_ca_topic_score_codex":0.000667853,"about_ca_topic_score_gemma":0.0008653917,"teacher_disagreement_score":0.0043337685,"about_ca_system_score_codex":0.0005633883,"about_ca_system_score_gemma":0.00057654,"threshold_uncertainty_score":0.022919416},"labels":[],"label_agreement":null},{"id":"W2105748014","doi":"10.1128/jcm.38.9.3388-3393.2000","title":"Detection of Human Papillomavirus Type 16 DNA in Consecutive Genital Samples Does Not Always Represent Persistent Infection as Determined by Molecular Variant Analysis","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Hôpital Notre-Dame","funders":"","keywords":"Single-strand conformation polymorphism; Biology; Typing; Primer (cosmetics); Polymerase chain reaction; HPV infection; Virology; Sex organ; Population; DNA sequencing; Papillomaviridae; Cervix; DNA; Genetics; Medicine; Cancer; Cervical cancer; Gene","score_opus":0.05378212573256572,"score_gpt":0.40115881418743693,"score_spread":0.3473766884548712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105748014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985378,0.00036505834,0.00062807085,0.000019012365,0.0000075082253,0.000014601636,0.00005796744,0.000011915031,0.00035811766],"genre_scores_gemma":[0.9986083,0.00016611967,0.0008888723,0.000037907586,0.000012680388,0.0000126356035,0.00011720136,0.000004219307,0.00015212833],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909866,0.00022359149,0.00012433258,0.00021471376,0.0002213198,0.00011747987],"domain_scores_gemma":[0.99799335,0.0007748691,0.0005573766,0.0002933679,0.00023990663,0.00014107178],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008453614,0.0003011143,0.0002743707,0.0008709199,0.00023424545,0.00045451106,0.00028928,0.00060597813,0.0016058543],"category_scores_gemma":[0.004573929,0.0003507252,0.00013912412,0.0005438806,0.000513587,0.00039251032,0.00026088793,0.00023648617,0.00050090393],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041432242,0.00006188107,0.9138893,0.00007315723,0.000051698247,0.0010924181,0.00040070686,0.00008128375,0.07158651,0.00004723007,0.0001272065,0.012174206],"study_design_scores_gemma":[0.000025809795,0.0011258686,0.95450336,0.000026421756,0.00008074608,0.01822591,0.00040465556,0.00079205085,0.023289116,0.000114967734,0.0013961195,0.000014976561],"about_ca_topic_score_codex":0.0006954515,"about_ca_topic_score_gemma":0.0007259882,"teacher_disagreement_score":0.0016058543,"about_ca_system_score_codex":0.00012199857,"about_ca_system_score_gemma":0.0001143879,"threshold_uncertainty_score":0.0053721666},"labels":[],"label_agreement":null},{"id":"W2106039289","doi":"10.1128/jcm.00513-11","title":"Evaluation of BacT/Alert 3D Automated Unit for Detection of Nontuberculous Mycobacteria Requiring Incubation at 30°C for Optimal Growth","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health; St. Boniface Hospital","funders":"","keywords":"Nontuberculous mycobacteria; Mycobacterium marinum; Microbiology; Mycobacterium; Incubation; Biology; Bacteria","score_opus":0.18560946503279008,"score_gpt":0.43452708276368357,"score_spread":0.2489176177308935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106039289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9517609,0.002047227,0.041407984,0.00030924307,0.0002260618,0.00045200353,0.0009549087,0.0011557284,0.0016860437],"genre_scores_gemma":[0.8973538,0.00089198904,0.0974525,0.0003074678,0.000061991166,0.00039516974,0.0014579059,0.00015535727,0.0019237973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99373406,0.0019540193,0.0005640387,0.0007649951,0.0027217225,0.0002612289],"domain_scores_gemma":[0.9917259,0.0033277771,0.0008562368,0.0006101318,0.0031700057,0.0003098376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038043768,0.0008078099,0.0009194341,0.0013521456,0.00040066952,0.000630084,0.001169577,0.0012643237,0.0012351819],"category_scores_gemma":[0.008718614,0.0006780845,0.0004340308,0.0010527857,0.0005204612,0.00045169992,0.00052244036,0.00050976255,0.0010070556],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033777137,0.00033576263,0.041892577,0.00042558595,0.00010417881,0.0003651251,0.00051837467,0.00088941987,0.92852473,0.00012960935,0.0009077694,0.022529256],"study_design_scores_gemma":[0.00013726616,0.0046466687,0.06547865,0.00007675877,0.00032839403,0.0027129406,0.00027993135,0.023421908,0.89871156,0.00010262921,0.0039914357,0.00011191717],"about_ca_topic_score_codex":0.0017082763,"about_ca_topic_score_gemma":0.0022470837,"teacher_disagreement_score":0.0038043768,"about_ca_system_score_codex":0.00036977342,"about_ca_system_score_gemma":0.00048333508,"threshold_uncertainty_score":0.020119667},"labels":[],"label_agreement":null},{"id":"W2106048079","doi":"10.1128/jcm.00663-13","title":"Emergence of a New Norovirus GII.4 Variant and Changes in the Historical Biennial Pattern of Norovirus Outbreak Activity in Alberta, Canada, from 2008 to 2013","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Provincial Laboratory of Public Health; Health Canada; University of Calgary; University of Alberta","funders":"","keywords":"Outbreak; Norovirus; Demography; Geography; Medicine; Veterinary medicine; Virology","score_opus":0.05257602218094125,"score_gpt":0.34499248735526855,"score_spread":0.2924164651743273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106048079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99446905,0.0012169664,0.00021975646,0.00019389592,0.000022832312,0.000023361374,0.0019229843,0.000021768094,0.0019092791],"genre_scores_gemma":[0.9955154,0.000836748,0.0003509399,0.00012702827,0.000015918022,0.000008419481,0.0022751035,0.0000061951837,0.0008642635],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994511,0.000023054263,0.000021286622,0.000086770386,0.00023462102,0.00018318558],"domain_scores_gemma":[0.99878293,0.00003793577,0.00024389416,0.000027088061,0.0006460756,0.00026211853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052836176,0.00037520012,0.0002677816,0.0014218003,0.0011621043,0.001155088,0.00077819347,0.00027015907,0.00061822915],"category_scores_gemma":[0.0010090215,0.000246001,0.0003069449,0.0019400019,0.0007887044,0.00029729333,0.0005231829,0.0005352673,0.00008423154],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001533701,0.000015304053,0.9882913,0.000036068486,0.000040779687,0.000202973,0.0005711848,0.00033003005,0.0011030354,0.00007878772,0.00090414175,0.008273113],"study_design_scores_gemma":[0.000001825673,0.000014898727,0.9982337,0.000017172617,0.000010691801,0.00007039859,0.00060759566,0.00023777252,0.00010887254,0.000011675424,0.00067923585,0.0000060904654],"about_ca_topic_score_codex":0.975603,"about_ca_topic_score_gemma":0.9877131,"teacher_disagreement_score":0.024397016,"about_ca_system_score_codex":0.014941274,"about_ca_system_score_gemma":0.013028944,"threshold_uncertainty_score":0.10840702},"labels":[],"label_agreement":null},{"id":"W2106050140","doi":"10.1128/jcm.41.4.1375-1385.2003","title":"Presence and Characterization of Extraintestinal Pathogenic <i>Escherichia coli</i> Virulence Genes in F165-Positive <i>E. coli</i> Strains Isolated from Diseased Calves and Pigs","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Virulence; Biology; Operon; Fimbria; Microbiology; Escherichia coli; Gene; Bacterial adhesin; Genotype; Locus (genetics); Pathogenicity island; Pathogenic Escherichia coli; Genetics; Allele","score_opus":0.019818402321536012,"score_gpt":0.30768690098443535,"score_spread":0.2878684986628993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106050140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961,0.00007585949,0.00010056433,0.00000780133,0.0000027547544,0.000006840917,0.00009302259,0.0000024629533,0.00010073058],"genre_scores_gemma":[0.99852127,0.00012126733,0.0005182317,0.000031061092,0.000010108324,0.000007876095,0.0006280566,0.0000045173088,0.00015757466],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996488,0.000036287074,0.0000469492,0.000072106915,0.00009570314,0.000100173565],"domain_scores_gemma":[0.99920803,0.000100591016,0.000318937,0.000043032975,0.00012346313,0.00020587056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020669308,0.00042657,0.00032747377,0.00079318206,0.00021104941,0.00046080066,0.00018822479,0.000343454,0.00034832006],"category_scores_gemma":[0.00075517816,0.00020132966,0.0002848977,0.00036575386,0.0003163024,0.00021720181,0.00026741295,0.0003193512,0.00016374238],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029000503,0.00015413048,0.14481167,0.00007206404,0.00004628953,0.00045147756,0.00023796414,0.00006973259,0.8517507,0.000020933785,0.00003714934,0.0020579807],"study_design_scores_gemma":[0.000014363448,0.00070971483,0.94961476,0.000012406557,0.00007347548,0.002331777,0.00037535085,0.00022431751,0.046178084,0.000014411774,0.00043667693,0.000014695656],"about_ca_topic_score_codex":0.0026106043,"about_ca_topic_score_gemma":0.0017226025,"teacher_disagreement_score":0.0026106043,"about_ca_system_score_codex":0.00019510907,"about_ca_system_score_gemma":0.00017234133,"threshold_uncertainty_score":0.0051908493},"labels":[],"label_agreement":null},{"id":"W2106232188","doi":"10.1128/jcm.43.2.802-807.2005","title":"Six-Month Multicenter Study on Invasive Infections Due to <i>Streptococcus pyogenes</i> and <i>Streptococcus dysgalactiae</i> subsp. <i>equisimilis</i> in Argentina","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Streptococcus dysgalactiae; Streptococcus pyogenes; Microbiology; Biology; Serology; Typing; Streptococcus; Streptococcaceae; Serotype; Group A; Toxic shock syndrome; Antibiotics; Immunology; Medicine; Streptococcus agalactiae; Bacteria; Genetics; Antibody; Internal medicine; Staphylococcus aureus","score_opus":0.042110020215977914,"score_gpt":0.37735677401645773,"score_spread":0.3352467538004798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106232188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991002,0.00007838212,0.000071076145,0.000021553586,0.0000043672158,0.000026174173,0.0002491796,0.0000021419112,0.00044682113],"genre_scores_gemma":[0.99892515,0.000102726255,0.00009389322,0.000031996173,0.000013178863,0.000024053254,0.0006118217,0.0000020893435,0.0001950337],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99942565,0.00021112726,0.000040599225,0.00010760089,0.00008068239,0.00013438829],"domain_scores_gemma":[0.9989349,0.00011060848,0.00042965676,0.00007081286,0.0001690109,0.00028497685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063442014,0.0005300789,0.0005628944,0.0005013374,0.0005823886,0.00048451763,0.00022133894,0.00033240614,0.0006974895],"category_scores_gemma":[0.0013350785,0.0003903022,0.00026463898,0.00059319823,0.00036185057,0.00039323617,0.0004227458,0.000491237,0.0001974936],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033192066,0.0001440031,0.99750537,0.0000068568083,0.000029554889,0.00025118614,0.00020436173,0.000023024482,0.00045003401,0.000006163972,0.00010276012,0.0009448585],"study_design_scores_gemma":[0.000021352615,0.00037587507,0.99877924,0.0000028152022,0.000012768652,0.00030884086,0.00021388028,0.000031913034,0.000044870365,0.000003082685,0.0002032469,0.0000022210695],"about_ca_topic_score_codex":0.016208231,"about_ca_topic_score_gemma":0.013766273,"teacher_disagreement_score":0.016208231,"about_ca_system_score_codex":0.00070453994,"about_ca_system_score_gemma":0.00032620245,"threshold_uncertainty_score":0.032227755},"labels":[],"label_agreement":null},{"id":"W2106523348","doi":"10.1128/jcm.42.8.3449-3455.2004","title":"Molecular Typing and Distribution of <i>Staphylococcus aureus</i> Isolates in Eastern Canadian Dairy Herds","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Health Canada; Agriculture and Agri-Food Canada","funders":"Dairy Farmers of Ontario","keywords":"Pulsed-field gel electrophoresis; Biology; Phage typing; Microbiology; Typing; Staphylococcus aureus; Antibiotic resistance; Penicillin; Herd; Virology; Antibiotics; Genetics; Genotype; Bacteria; Gene","score_opus":0.022106692096374135,"score_gpt":0.32821394462610265,"score_spread":0.30610725252972854,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106523348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900323,0.00018023621,0.000053307707,0.00003335262,0.0000015746064,0.000008915343,0.00026582877,0.0000037285024,0.00044986358],"genre_scores_gemma":[0.99836844,0.00031338853,0.00038050025,0.000040043284,0.0000024698752,0.000007113522,0.0004817645,0.0000029590547,0.00040339088],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990778,0.000040030638,0.000044746248,0.00017903227,0.00039621888,0.0002620502],"domain_scores_gemma":[0.9990113,0.000082525265,0.00020001887,0.000023680579,0.00046783808,0.00021462415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050725613,0.0002838211,0.00029055783,0.0027213139,0.0014430207,0.0009105348,0.000763213,0.00043115986,0.00083878986],"category_scores_gemma":[0.0016134023,0.00036149766,0.0002123971,0.0025645336,0.0009364439,0.00020482167,0.0003310996,0.00027475943,0.000121361794],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012915248,0.000029503513,0.97972965,0.000050264192,0.000035220346,0.00032695322,0.0011273939,0.00021552126,0.009479934,0.00005921146,0.00034670453,0.008470431],"study_design_scores_gemma":[0.0000022486852,0.000031262523,0.9984946,0.000011716584,0.000008450848,0.0001429504,0.00051201787,0.00011653005,0.00025673883,0.000006851817,0.00041026733,0.0000062886843],"about_ca_topic_score_codex":0.94413835,"about_ca_topic_score_gemma":0.9608924,"teacher_disagreement_score":0.055861652,"about_ca_system_score_codex":0.00967647,"about_ca_system_score_gemma":0.006492282,"threshold_uncertainty_score":0.11238122},"labels":[],"label_agreement":null},{"id":"W2106535627","doi":"10.1128/jcm.02484-09","title":"Rapid Identification and Differentiation of <i>Mycobacterium avium</i> Subspecies <i>paratuberculosis</i> Types by Use of Real-Time PCR and High-Resolution Melt Analysis of the MAP1506 Locus","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Universidad Complutense de Madrid; Natural Sciences and Engineering Research Council of Canada; College of Veterinary Medicine, University of Minnesota; University of Minnesota; McGill University; AgResearch","keywords":"High Resolution Melt; Amplicon; Mycobacterium avium subspecies paratuberculosis; Paratuberculosis; Biology; Subspecies; Polymerase chain reaction; Mycobacterium; Locus (genetics); Genetics; Gene; Virology; Microbiology; Bacteria","score_opus":0.02524956025504531,"score_gpt":0.30708836741771695,"score_spread":0.2818388071626716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106535627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88411,0.0027224047,0.107762925,0.00047495065,0.00009255773,0.00026237135,0.0009395619,0.0006552579,0.0029800488],"genre_scores_gemma":[0.8721381,0.0012237324,0.12369672,0.00013468317,0.000043157488,0.00013252557,0.0011630107,0.000075091695,0.001392939],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995011,0.00009272815,0.000050409362,0.00013452243,0.00015203202,0.000069224356],"domain_scores_gemma":[0.99939895,0.00018378075,0.00016919151,0.00006207551,0.00012679692,0.00005925512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047886293,0.00044233442,0.00026484343,0.0008519162,0.00018609139,0.0005005059,0.00037701704,0.0006858302,0.001024462],"category_scores_gemma":[0.0012908396,0.0002611465,0.00030114848,0.00029485647,0.00034305837,0.0004995377,0.0003753371,0.0008192698,0.0008835955],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000119928314,0.000048676255,0.0084412545,0.00006694435,0.0000051679276,0.00013116145,0.00010534737,0.000060431554,0.97493243,0.00012713912,0.00012769371,0.015833953],"study_design_scores_gemma":[0.000029426987,0.0006559977,0.056717418,0.000043836044,0.000043139393,0.0047887634,0.00027442063,0.0030673333,0.92897624,0.000490818,0.004878796,0.000033665536],"about_ca_topic_score_codex":0.0003853543,"about_ca_topic_score_gemma":0.00050751463,"teacher_disagreement_score":0.001024462,"about_ca_system_score_codex":0.00013934917,"about_ca_system_score_gemma":0.00011835087,"threshold_uncertainty_score":0.0034271479},"labels":[],"label_agreement":null},{"id":"W2106694419","doi":"10.1128/jcm.38.11.4264-4265.2000","title":"Can Pooling Be Used for Seroprevalence Studies of Hepatitis C?","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"HIV Legal Network; University of British Columbia; St. Paul's Hospital","funders":"","keywords":"Seroprevalence; Serial dilution; Pooling; Virology; Medicine; Antibody; Immunology; Biology; Serology; Pathology","score_opus":0.17681716577463172,"score_gpt":0.45856339905295723,"score_spread":0.2817462332783255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106694419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48167267,0.035085727,0.39694175,0.043273702,0.011012765,0.0062337583,0.0037306882,0.003642406,0.018406527],"genre_scores_gemma":[0.69388455,0.012336481,0.2676557,0.012026369,0.0039324937,0.003337811,0.0024254716,0.00040005648,0.004001074],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9174962,0.057870757,0.0060963333,0.00553164,0.011071518,0.0019335817],"domain_scores_gemma":[0.88632405,0.047261994,0.01882128,0.033276383,0.011388973,0.0029272716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.13296825,0.0036108526,0.0072167674,0.005416751,0.0016585294,0.0038915165,0.0047699544,0.004481957,0.0027995675],"category_scores_gemma":[0.1597804,0.0019246936,0.0035221768,0.006776112,0.0036143663,0.0072667017,0.0026467193,0.001892042,0.0027003246],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068025733,0.0019456178,0.27498996,0.0033865706,0.0047675776,0.001227386,0.002588198,0.0031299896,0.028329248,0.003643439,0.020876482,0.64831305],"study_design_scores_gemma":[0.0023668737,0.047345843,0.5064308,0.004937851,0.013109365,0.010538377,0.007570992,0.037174337,0.10479022,0.10871907,0.15437011,0.0026461747],"about_ca_topic_score_codex":0.0036541373,"about_ca_topic_score_gemma":0.0046302346,"teacher_disagreement_score":0.13296825,"about_ca_system_score_codex":0.00090633164,"about_ca_system_score_gemma":0.0019830905,"threshold_uncertainty_score":0.70321167},"labels":[],"label_agreement":null},{"id":"W2106794275","doi":"10.1128/jcm.42.11.5412-5414.2004","title":"Disseminated <i>Beauveria bassiana</i> Infection in a Patient with Acute Lymphoblastic Leukemia","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Entomopathogenic Microorganisms in Pest Control","field":"Agricultural and Biological Sciences","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; University of Alberta","keywords":"Beauveria bassiana; Bassiana; Lymphoblastic Leukemia; Amphotericin B; Itraconazole; Pathogen; Biology; Leukemia; Acute leukemia; Mycosis; Microbiology; Acute lymphocytic leukemia; Virology; Medicine; Immunology; Antifungal; Biological pest control; Botany","score_opus":0.009587537646697545,"score_gpt":0.2587887745316367,"score_spread":0.24920123688493914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106794275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853918,0.0030236994,0.001286599,0.0019456479,0.00009740452,0.000080806574,0.000155028,0.00013665055,0.007882355],"genre_scores_gemma":[0.99759716,0.00080802315,0.00038903818,0.00039080824,0.00014619378,0.000009157149,0.000050821916,0.000011455139,0.0005973817],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996742,0.000033784025,0.000031349075,0.00008797391,0.000039600418,0.0001331889],"domain_scores_gemma":[0.99902344,0.00028245835,0.00022406987,0.000050074286,0.00004701752,0.000372957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018745393,0.001102377,0.0008336612,0.001116832,0.0019096005,0.0010520387,0.00052724115,0.0024623019,0.0017010949],"category_scores_gemma":[0.0013235392,0.00065544114,0.00051036396,0.00099894,0.0012440912,0.0010047255,0.0007538139,0.0024038693,0.00046307078],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000085882755,0.000048487444,0.027402615,0.000036456477,0.000008082752,0.9684686,0.00035453963,0.00006892737,0.0017175454,0.00013061955,0.00023419723,0.0014440373],"study_design_scores_gemma":[0.000015642865,0.00012696661,0.013529209,0.000015116468,0.000018362392,0.9847987,0.00020783945,0.00015616327,0.00049487833,0.000093512586,0.00053464447,0.000008887716],"about_ca_topic_score_codex":0.0028179167,"about_ca_topic_score_gemma":0.0023956583,"teacher_disagreement_score":0.0028179167,"about_ca_system_score_codex":0.0007540686,"about_ca_system_score_gemma":0.00043265233,"threshold_uncertainty_score":0.005690694},"labels":[],"label_agreement":null},{"id":"W2106796901","doi":"10.1128/jcm.39.8.2958-2960.2001","title":"Efficacy of a Swab Transport System in Maintaining Viability of <i>Neisseria gonorrhoeae</i> and <i>Streptococcus pneumoniae</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Neisseria gonorrhoeae; Microbiology; Streptococcus pneumoniae; Biology; Strain (injury); Antibiotics","score_opus":0.03198283335797355,"score_gpt":0.3525345628217749,"score_spread":0.3205517294638014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106796901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943083,0.0011159072,0.0031781967,0.00012509643,0.00007611413,0.00017408562,0.00031749535,0.00007933759,0.0006255137],"genre_scores_gemma":[0.9660117,0.0024306204,0.025800657,0.00013819776,0.000095494375,0.00022415374,0.0028720656,0.00009243275,0.0023346914],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972773,0.00092895346,0.00037525597,0.0003652448,0.00088036974,0.00017294161],"domain_scores_gemma":[0.99780744,0.00073530414,0.00040681483,0.00022155422,0.0006401475,0.00018873216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022198353,0.000683055,0.0007014153,0.00037295578,0.00042618247,0.0012856403,0.0008782211,0.00081959576,0.0007533916],"category_scores_gemma":[0.002731689,0.00038286706,0.0005323919,0.00036265023,0.00041645998,0.00093131646,0.0008827897,0.0006945371,0.00046767766],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082131993,0.00028569097,0.002998003,0.0002369044,0.000036280886,0.000026107407,0.0001506093,0.0002445647,0.98824584,0.000031649608,0.00012429207,0.0067986785],"study_design_scores_gemma":[0.000040542818,0.009470651,0.017275816,0.000044601864,0.00009220514,0.00022602944,0.00014713264,0.0014134218,0.9691055,0.000016851738,0.0021233896,0.000043846565],"about_ca_topic_score_codex":0.0031329647,"about_ca_topic_score_gemma":0.0036977087,"teacher_disagreement_score":0.0031329647,"about_ca_system_score_codex":0.00038361273,"about_ca_system_score_gemma":0.0007479599,"threshold_uncertainty_score":0.01173979},"labels":[],"label_agreement":null},{"id":"W2106849851","doi":"10.1128/jcm.42.10.4824-4827.2004","title":"Species Distribution and Ribotype Diversity of <i>Burkholderia cepacia</i> Complex Isolates from French Patients with Cystic Fibrosis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Fifth Framework Programme; Association Vaincre la Mucoviscidose; European Commission","keywords":"Burkholderia cepacia complex; Burkholderia cenocepacia; Ribotyping; Burkholderia; Microbiology; Cystic fibrosis; Biology; Genotype; Genetics; Bacteria; Gene","score_opus":0.03289069802658383,"score_gpt":0.31804072870610206,"score_spread":0.2851500306795182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106849851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99923635,0.00033744023,0.000053986703,0.00003372147,0.0000014371925,0.0000024500264,0.000094468465,0.0000026164748,0.00023759744],"genre_scores_gemma":[0.99958116,0.00011205938,0.0000887036,0.000031784508,0.0000036859863,0.0000017757146,0.0001178284,8.332423e-7,0.00006222695],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997677,0.00004362349,0.000026708092,0.00004753492,0.00003860311,0.000075785625],"domain_scores_gemma":[0.99955636,0.00012727693,0.00013682392,0.000020686344,0.00007926906,0.000079598285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024760774,0.00021734872,0.00020140166,0.0010187955,0.00032367802,0.00039927417,0.00010104068,0.00036768452,0.001005218],"category_scores_gemma":[0.0010619335,0.00011699116,0.00019307634,0.00039251128,0.00023929136,0.00014244462,0.00011690273,0.0001301045,0.00013653991],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018536297,0.000018573393,0.98255056,0.000019834277,0.000037052974,0.00075601845,0.00061945454,0.00007747274,0.009699847,0.000031836495,0.00021640272,0.0057874555],"study_design_scores_gemma":[0.000007454247,0.00013283786,0.99448013,0.000009833556,0.000027077289,0.0033206427,0.00035913681,0.00012657804,0.00096701074,0.000010108379,0.00055320194,0.0000060521743],"about_ca_topic_score_codex":0.02446222,"about_ca_topic_score_gemma":0.016610453,"teacher_disagreement_score":0.02446222,"about_ca_system_score_codex":0.0005388573,"about_ca_system_score_gemma":0.00017192938,"threshold_uncertainty_score":0.048639655},"labels":[],"label_agreement":null},{"id":"W2106973493","doi":"10.1128/jcm.38.6.2150-2155.2000","title":"A Multicenter Study Evaluation of the Digene Hybrid Capture II Signal Amplification Technique for Detection of Hepatitis B Virus DNA in Serum Samples and Testing of EUROHEP Standards","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Hepatitis B virus; Genotype; Virology; Hybrid capture; Molecular biology; Coefficient of variation; Reproducibility; DNA; Biology; Virus; Chromatography; Chemistry; Cancer; Cervical intraepithelial neoplasia; Genetics","score_opus":0.09318373134951852,"score_gpt":0.3937648938144177,"score_spread":0.3005811624648992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106973493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931411,0.0011758419,0.0037825846,0.00008533979,0.000037079622,0.000614129,0.00024059387,0.000048156784,0.0008751542],"genre_scores_gemma":[0.9908794,0.00031937173,0.0067769284,0.00020074158,0.000047529393,0.00041968853,0.00084329216,0.000025803507,0.00048720458],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9861736,0.008698242,0.0006977445,0.0019167821,0.0021813868,0.00033224386],"domain_scores_gemma":[0.99162465,0.001572891,0.0017562353,0.0010348452,0.0032212373,0.00079015404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018668659,0.0012307527,0.00062224944,0.0008294438,0.00046744768,0.00086271175,0.0006756754,0.0008198301,0.0006684124],"category_scores_gemma":[0.010484306,0.00036582205,0.00048091842,0.00078955444,0.0007250002,0.00048148748,0.0006454939,0.0005191772,0.00027348637],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03211544,0.010463709,0.69055223,0.00067639496,0.001255869,0.0010560872,0.0027596282,0.0021258204,0.14356412,0.0007290811,0.001565558,0.11313608],"study_design_scores_gemma":[0.0040333364,0.26298058,0.641927,0.00012360691,0.0009622197,0.003807241,0.00080231414,0.0056229993,0.06669496,0.00018032633,0.012753725,0.000111661764],"about_ca_topic_score_codex":0.0013550952,"about_ca_topic_score_gemma":0.0010598066,"teacher_disagreement_score":0.018668659,"about_ca_system_score_codex":0.0007162939,"about_ca_system_score_gemma":0.0008378437,"threshold_uncertainty_score":0.098730505},"labels":[],"label_agreement":null},{"id":"W2107006865","doi":"10.1128/jcm.38.4.1563-1568.2000","title":"Emergence of Resistance of <i>Candida albicans</i> to Clotrimazole in Human Immunodeficiency Virus-Infected Children: In Vitro and Clinical Correlations","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôtel-Dieu de Québec; Centre hospitalier universitaire de Québec; Pediatric Oncology Group","funders":"","keywords":"Clotrimazole; Broth microdilution; Microbiology; Biology; Minimum inhibitory concentration; Candida albicans; Mycosis; Population; Medicine; Immunology; Antibiotics; Antifungal","score_opus":0.018854889118439938,"score_gpt":0.35466557128337606,"score_spread":0.33581068216493615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107006865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735034,0.0019243844,0.00012220407,0.00003667951,0.000005515473,0.000017087092,0.00018104099,0.000009064256,0.00035367953],"genre_scores_gemma":[0.9986084,0.00070962077,0.00030568542,0.000044801338,0.000013880833,0.000012020422,0.00024115496,0.0000033731708,0.000060959224],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989668,0.0002430673,0.00014248204,0.00020520386,0.00028900433,0.00015349606],"domain_scores_gemma":[0.9972932,0.0010501302,0.0009429079,0.00013412557,0.0003571927,0.00022258314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008049534,0.00046016945,0.0006678683,0.00079471106,0.00029406563,0.0011478312,0.0003585325,0.0007506158,0.0005995465],"category_scores_gemma":[0.003139084,0.0003250284,0.00032039237,0.00084709993,0.00063652603,0.00040980862,0.00024939107,0.0008614057,0.00023434532],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044966897,0.00010774258,0.9807092,0.000100174504,0.00007744046,0.0010257625,0.00029430742,0.00015463629,0.011754924,0.000037790523,0.00017374192,0.0051146625],"study_design_scores_gemma":[0.000022673457,0.0009827298,0.97858185,0.000021775219,0.00009518855,0.0072330018,0.00033601504,0.00042571075,0.011690529,0.00002852627,0.00056746823,0.000014682973],"about_ca_topic_score_codex":0.0016588618,"about_ca_topic_score_gemma":0.0011006088,"teacher_disagreement_score":0.0016588618,"about_ca_system_score_codex":0.0005609743,"about_ca_system_score_gemma":0.00026401447,"threshold_uncertainty_score":0.004257083},"labels":[],"label_agreement":null},{"id":"W2107125519","doi":"10.1128/jcm.02332-07","title":"Performance of HerpeSelect and Kalon Assays in Detection of Antibodies to Herpes Simplex Virus Type 2","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Université de Sherbrooke; Institut National de la Santé et de la Recherche Médicale; London School of Hygiene and Tropical Medicine; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Serology; Herpes simplex virus; Seroconversion; Virology; Sex organ; Concordance; Antibody; Herpes Genitalis; Genital ulcer; Biology; Virus; Immunology; Herpesviridae; Medicine; Sexually transmitted disease; Viral disease; Genital herpes; Human immunodeficiency virus (HIV); Internal medicine; Syphilis","score_opus":0.0565408525962647,"score_gpt":0.37753157383533403,"score_spread":0.32099072123906935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107125519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956951,0.0018153482,0.0013942019,0.000036918053,0.000028207238,0.000028855919,0.00012789902,0.000039084975,0.0008342231],"genre_scores_gemma":[0.99666554,0.00033954196,0.0024753592,0.000028938304,0.000009336238,0.00002617716,0.00017537754,0.0000065857175,0.0002731323],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99569243,0.0022990224,0.00024962044,0.00062875124,0.0008757067,0.0002544532],"domain_scores_gemma":[0.99569654,0.0019845741,0.0013855862,0.0002878767,0.00043906044,0.00020637822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031259153,0.00092618534,0.0005393064,0.0010746517,0.00023106518,0.00088946323,0.00039586017,0.00049427897,0.0007644646],"category_scores_gemma":[0.009427914,0.00044380844,0.0003811064,0.00071312836,0.0005498761,0.00045753983,0.0006005847,0.000348382,0.00038160902],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003490596,0.0001603999,0.9322094,0.00021004151,0.00020302743,0.00023904917,0.0007666565,0.0007027225,0.027677719,0.00009810493,0.0002739758,0.03396837],"study_design_scores_gemma":[0.00023980746,0.0033029614,0.9380516,0.00013382666,0.00020470469,0.00381736,0.00090657454,0.009963978,0.04086852,0.00019687273,0.002247672,0.000066162],"about_ca_topic_score_codex":0.001801882,"about_ca_topic_score_gemma":0.0024857444,"teacher_disagreement_score":0.0031259153,"about_ca_system_score_codex":0.00053721416,"about_ca_system_score_gemma":0.00024859223,"threshold_uncertainty_score":0.016531646},"labels":[],"label_agreement":null},{"id":"W2107629404","doi":"10.1128/jcm.00238-12","title":"Evaluation of Optimal Storage Temperature, Time, and Transport Medium for Detection of Group B Streptococcus in StrepB Carrot Broth","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kingston General Hospital; Queen's University","funders":"Alere","keywords":"Streptococcus; Streptococcaceae; Microbiology; Food science; Biology; Bacteria; Antibiotics","score_opus":0.046559530926148736,"score_gpt":0.3800925902355507,"score_spread":0.33353305930940197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107629404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937452,0.0011870601,0.0040710084,0.00007687918,0.000037418282,0.00009600618,0.00027444746,0.00005164782,0.00046026308],"genre_scores_gemma":[0.9784072,0.0014317279,0.017494684,0.00004407121,0.000027179696,0.0002311645,0.00076782756,0.00004443936,0.0015516646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994497,0.00017066089,0.00007028009,0.000076506454,0.00015734452,0.0000754178],"domain_scores_gemma":[0.99933857,0.00020454174,0.00016910258,0.000041137842,0.000180566,0.00006605847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000722544,0.0007377424,0.00060862384,0.00032806373,0.00032806903,0.0006473489,0.00038019827,0.00043756186,0.0007160126],"category_scores_gemma":[0.0014583103,0.00024601485,0.00035907896,0.000372303,0.00025995806,0.00053301844,0.00034834465,0.00039992196,0.0004424877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041716028,0.000035137648,0.00056018354,0.000062185245,0.0000052372843,0.0000425855,0.00004860778,0.000079376776,0.99762875,0.000013616946,0.000019555499,0.0010876606],"study_design_scores_gemma":[0.0000065793406,0.000823041,0.0056927726,0.00002288606,0.000036466816,0.00011767603,0.000111396635,0.00061523466,0.99199826,0.000014484719,0.00054209935,0.00001910718],"about_ca_topic_score_codex":0.001473703,"about_ca_topic_score_gemma":0.0021388656,"teacher_disagreement_score":0.001473703,"about_ca_system_score_codex":0.00024865955,"about_ca_system_score_gemma":0.0004578424,"threshold_uncertainty_score":0.0038211942},"labels":[],"label_agreement":null},{"id":"W2107636262","doi":"10.1128/jcm.44.2.449-458.2006","title":"Use of the <i>espZ</i> Gene Encoded in the Locus of Enterocyte Effacement for Molecular Typing of Shiga Toxin-Producing <i>Escherichia coli</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Biology; Shiga toxin; Subtyping; Locus (genetics); Serotype; Intimin; Escherichia coli; Genotype; Virulence; Typing; Microbiology; Pathogenicity island; Genetics; Multilocus sequence typing; Allele; Gene; Virology; Enterobacteriaceae","score_opus":0.04294721326937957,"score_gpt":0.33839740531686896,"score_spread":0.2954501920474894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107636262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98913467,0.00018947502,0.009312645,0.000052938794,0.000009830617,0.00007612885,0.00042063475,0.000043559015,0.0007600781],"genre_scores_gemma":[0.9736013,0.00030761943,0.023339778,0.000081334,0.000010307641,0.000082441984,0.0019302286,0.000022464203,0.0006245855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999474,0.0001266154,0.00005881456,0.00013784834,0.00013065242,0.00007203218],"domain_scores_gemma":[0.9995455,0.00015508641,0.00012348764,0.000056760644,0.0000545459,0.00006461568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003465285,0.00029600563,0.00021488099,0.0003926784,0.00010890366,0.00028200154,0.00024440238,0.0003107026,0.00040659268],"category_scores_gemma":[0.0005962251,0.00016765979,0.0002348045,0.00027076012,0.00022088336,0.00015599247,0.00031062088,0.00039352078,0.00030023025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078516416,0.00003603276,0.002461398,0.000014447103,0.0000053546173,0.000014537089,0.000015227054,0.000028976312,0.9958478,0.000019366571,0.00000940064,0.0014689923],"study_design_scores_gemma":[0.00001601968,0.0009212959,0.08224595,0.000014175672,0.000044087305,0.0007180988,0.00008280983,0.0023035768,0.91221493,0.000059130285,0.0013644539,0.000015510806],"about_ca_topic_score_codex":0.00050381845,"about_ca_topic_score_gemma":0.00075789716,"teacher_disagreement_score":0.00050381845,"about_ca_system_score_codex":0.00013393216,"about_ca_system_score_gemma":0.00009879607,"threshold_uncertainty_score":0.0018326044},"labels":[],"label_agreement":null},{"id":"W2107889929","doi":"10.1128/jcm.42.4.1766-1769.2004","title":"Development and Comparison of Enzyme Immunoassays for Diagnosis of Chagas' Disease Using Fixed Forms of <i>Trypanosoma cruzi</i> (Epimastigotes, Amastigotes, and Trypomastigotes) and Assessment of Antigen Stability for the Three Assays","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Montreal General Hospital","funders":"","keywords":"Trypanosoma cruzi; Amastigote; Chagas disease; Immunofluorescence; Immunoassay; Kinetoplastida; Biology; Antigen; Immunology; Enzyme; Trypanosomiasis; Virology; Parasite hosting; Antibody; Leishmania; Biochemistry","score_opus":0.16206822228578588,"score_gpt":0.44159208339599576,"score_spread":0.2795238611102099,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107889929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94755363,0.0045358315,0.044680573,0.00012982657,0.000101595615,0.00042964317,0.00051669806,0.00040801775,0.0016443131],"genre_scores_gemma":[0.90972215,0.0014849012,0.08607286,0.0001347537,0.000029070914,0.00022689484,0.001465888,0.000027313974,0.00083609537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970285,0.0008682152,0.0002456197,0.0005365508,0.001120669,0.0002004269],"domain_scores_gemma":[0.99725026,0.001151414,0.00031474774,0.00020437746,0.0008610753,0.00021807279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002868701,0.0008829272,0.00046325158,0.0012121756,0.00032453393,0.00060655415,0.0005572323,0.0006738208,0.00038932764],"category_scores_gemma":[0.005008326,0.00043707687,0.00031272968,0.00065460184,0.0005438837,0.0002593733,0.00032622548,0.0006508119,0.00027733628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002408545,0.000613643,0.13001807,0.00033831896,0.00024304875,0.00011523095,0.00028722137,0.00093643373,0.8039395,0.0002578262,0.00037168106,0.060470376],"study_design_scores_gemma":[0.00029132122,0.0074226647,0.4198086,0.000072188115,0.00038728333,0.0030463617,0.00033329535,0.012286536,0.5513546,0.0003303039,0.0045745135,0.00009236885],"about_ca_topic_score_codex":0.0046588765,"about_ca_topic_score_gemma":0.006023641,"teacher_disagreement_score":0.0046588765,"about_ca_system_score_codex":0.0006502793,"about_ca_system_score_gemma":0.00044580427,"threshold_uncertainty_score":0.015171289},"labels":[],"label_agreement":null},{"id":"W2108038274","doi":"10.1128/jcm.01548-08","title":"Multilocus Sequence Typing Analysis of<i>Clostridium perfringens</i>Isolates from Necrotic Enteritis Outbreaks in Broiler Chicken Populations","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Nutreco (Canada); University of Guelph","funders":"University of Guelph; Poultry Industry Council; Canadian Food Inspection Agency; Canadian Poultry Research Council","keywords":"Multilocus sequence typing; Biology; Clostridium perfringens; Outbreak; Microbiology; Typing; Virology; Population; Locus (genetics); Genetics; Genotype; Gene; Bacteria","score_opus":0.1538128930722438,"score_gpt":0.411813022964185,"score_spread":0.2580001298919412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108038274","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995859,0.000049497856,0.00011538091,0.0000045814,0.0000012215917,0.0000067467304,0.00009487563,0.0000021826627,0.00013966991],"genre_scores_gemma":[0.99813664,0.00007673404,0.00063689996,0.000019407416,0.0000023296532,0.0000066617,0.00088357955,0.0000038939297,0.00023365709],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99976,0.000015376765,0.000021182996,0.00007511442,0.00007254183,0.000055743163],"domain_scores_gemma":[0.999496,0.000050971026,0.00012498452,0.000018714802,0.00019084655,0.0001184217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019241693,0.00024947882,0.0002171163,0.0006455173,0.00036468028,0.0004862181,0.00013636648,0.0001635854,0.00023303875],"category_scores_gemma":[0.0005467411,0.000117934265,0.00018123139,0.00044657197,0.00024945504,0.0001027628,0.00017218923,0.00016520165,0.00009527517],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053364213,0.00007822759,0.47196048,0.00009013743,0.00006711561,0.0004047529,0.0012305443,0.0001962556,0.51816803,0.000017092563,0.00009869326,0.0071550426],"study_design_scores_gemma":[0.0000059428835,0.00017424954,0.9908332,0.0000071516265,0.00003091691,0.00024762336,0.00033012716,0.00016808808,0.007825714,0.0000026511561,0.00037000104,0.0000043093337],"about_ca_topic_score_codex":0.064689845,"about_ca_topic_score_gemma":0.09729192,"teacher_disagreement_score":0.064689845,"about_ca_system_score_codex":0.00079048635,"about_ca_system_score_gemma":0.00048075276,"threshold_uncertainty_score":0.12862664},"labels":[],"label_agreement":null},{"id":"W2108203681","doi":"10.1128/jcm.38.11.4076-4079.2000","title":"Diagnostic Performance of the Roche AMPLICOR PCR in Detecting <i>Neisseria gonorrhoeae</i> in Genitourinary Specimens from Female Sex Workers in Cotonou, Benin","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Hôpital du Saint-Sacrement","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Urine; Medicine; Gonorrhea; Gynecology; Chlamydiales; Sexually transmitted disease; Microbiology; Virology; Biology; Internal medicine; Syphilis; Human immunodeficiency virus (HIV)","score_opus":0.036544729105819934,"score_gpt":0.3336859711943273,"score_spread":0.29714124208850734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108203681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984837,0.0006116444,0.00024793437,0.000026271247,0.00000805957,0.000022233375,0.000072594055,0.000009631886,0.00051791157],"genre_scores_gemma":[0.9978752,0.0002904426,0.0013248422,0.000040166204,0.000007436239,0.000015659578,0.00018338105,0.000003644944,0.00025912645],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984927,0.0005169168,0.00011663567,0.00024877506,0.00047908857,0.00014577887],"domain_scores_gemma":[0.9989421,0.00039033208,0.00021001846,0.00003744282,0.0002983675,0.000121695164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012154337,0.00065427466,0.00033973213,0.0010359836,0.00044145613,0.0007567555,0.00041579688,0.0005310172,0.00050249],"category_scores_gemma":[0.0021575296,0.00042288346,0.00015503011,0.0006594418,0.00055625505,0.000287859,0.00036559504,0.00023696285,0.000241482],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007150873,0.00013034257,0.9134314,0.00012283919,0.000043060947,0.00041509068,0.0012613449,0.0002414488,0.070424184,0.000022391661,0.00011621112,0.013076576],"study_design_scores_gemma":[0.000023996132,0.0009254016,0.984353,0.00004697529,0.00004391178,0.0013678166,0.0009855612,0.0012014422,0.010383937,0.000007603425,0.0006428895,0.000017456077],"about_ca_topic_score_codex":0.035494924,"about_ca_topic_score_gemma":0.06447572,"teacher_disagreement_score":0.035494924,"about_ca_system_score_codex":0.00083180633,"about_ca_system_score_gemma":0.0004665333,"threshold_uncertainty_score":0.07057667},"labels":[],"label_agreement":null},{"id":"W2108385979","doi":"10.1128/jcm.00046-11","title":"Prevalence and Genetic Relatedness of Methicillin-Susceptible Staphylococcus aureus Isolates Detected by the Xpert MRSA Nasal Assay","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Staphylococcus aureus; Microbiology; Micrococcaceae; Methicillin-resistant Staphylococcus aureus; Staphylococcal infections; Medicine; Virology; Biology; Meticillin; Staphylococcus; Bacteria; Antibacterial agent; Antibiotics; Genetics","score_opus":0.04666441302682013,"score_gpt":0.33599564681174593,"score_spread":0.2893312337849258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108385979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99954826,0.000080744794,0.000061385996,0.000007943343,0.0000013087575,0.0000030793617,0.000044247532,0.0000012707917,0.0002516569],"genre_scores_gemma":[0.9996569,0.000059670656,0.00007298246,0.0000071947206,0.000003129824,0.0000029049957,0.00007054516,8.4743283e-7,0.00012589259],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99936587,0.00013087995,0.00009663652,0.00013484355,0.00016001634,0.00011179798],"domain_scores_gemma":[0.9989396,0.00036954222,0.00029527282,0.00006559181,0.00018191629,0.00014804282],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044832373,0.00013732373,0.00022222451,0.001153804,0.0002886458,0.0003626459,0.00017475316,0.00042489916,0.0023833674],"category_scores_gemma":[0.0023568135,0.000177894,0.00013925924,0.00039567647,0.00025852548,0.00033035738,0.00028595436,0.00022439584,0.00041215998],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015228853,0.000075771015,0.98199123,0.000014005445,0.00002370696,0.00048340962,0.00039445714,0.00003519146,0.012737666,0.000037053713,0.00006993173,0.003985326],"study_design_scores_gemma":[0.000003473196,0.00030223,0.993722,0.000009546923,0.000017628272,0.0033804544,0.000550263,0.00021718048,0.0015313651,0.000025829257,0.00023492979,0.000005120129],"about_ca_topic_score_codex":0.0014667448,"about_ca_topic_score_gemma":0.0012054621,"teacher_disagreement_score":0.0023833674,"about_ca_system_score_codex":0.00010849931,"about_ca_system_score_gemma":0.00011195875,"threshold_uncertainty_score":0.007973194},"labels":[],"label_agreement":null},{"id":"W2108657884","doi":"10.1128/jcm.43.2.796-801.2005","title":"Genetic Variants of <i>Anaplasma phagocytophilum</i> Infecting Dogs in Western Washington State","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Washington State University","keywords":"Anaplasma phagocytophilum; Lethargy; Biology; Anaplasmosis; Ehrlichia; Anaplasma; Anaplasmataceae; Ehrlichiosis; Virology; Immunology; Medicine; Internal medicine; Antibody; Tick","score_opus":0.024562630129764562,"score_gpt":0.31972110402746334,"score_spread":0.2951584738976988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108657884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99982446,0.000014683583,0.000025972833,0.000004145251,9.791337e-7,0.000003709282,0.000018442437,0.0000014719777,0.000106225096],"genre_scores_gemma":[0.9997118,0.00002363861,0.000114326445,0.000008759308,0.0000016102192,0.0000032714727,0.00008764317,7.606239e-7,0.00004805125],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997749,0.000026170774,0.000031872358,0.00006731607,0.000046459,0.000053336014],"domain_scores_gemma":[0.99969685,0.000038064023,0.00014752019,0.0000124866965,0.000047985915,0.000057112866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020452836,0.00026641667,0.00019292213,0.0007354754,0.0004430041,0.00039917923,0.00018126126,0.00031685593,0.0003926653],"category_scores_gemma":[0.00044166553,0.00023297875,0.00014555053,0.00045035486,0.0005521365,0.00021241879,0.00021763219,0.0002642512,0.00009235066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003094671,0.0001372625,0.96674293,0.0000236894,0.00003815959,0.0024563817,0.0008444622,0.00017812349,0.026101597,0.000042593205,0.000121357,0.0030039428],"study_design_scores_gemma":[0.000016799719,0.00047010166,0.990807,0.000012560467,0.000036107227,0.0046451692,0.0009052092,0.00039477798,0.0022116154,0.000029331155,0.00046347192,0.000007923511],"about_ca_topic_score_codex":0.007038593,"about_ca_topic_score_gemma":0.014649214,"teacher_disagreement_score":0.007038593,"about_ca_system_score_codex":0.0004996508,"about_ca_system_score_gemma":0.00018207975,"threshold_uncertainty_score":0.01399523},"labels":[],"label_agreement":null},{"id":"W2108704234","doi":"10.1128/jcm.39.5.1796-1801.2001","title":"Replicate PCR Testing and Probit Analysis for Detection and Quantitation of <i>Chlamydia pneumoniae</i> in Clinical Specimens","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Chlamydophila pneumoniae; Chlamydia; Sputum; Serial dilution; Chlamydiaceae; Chlamydiales; Nested polymerase chain reaction; Biology; Replicate; Microbiology; Virology; Polymerase chain reaction; Immunology; Medicine; Pathology; Tuberculosis; Gene","score_opus":0.13667931217228999,"score_gpt":0.43138318106192797,"score_spread":0.29470386888963795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108704234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7854521,0.0011832931,0.20870332,0.00012858023,0.00012543505,0.0009365672,0.00092271616,0.00074418343,0.0018037275],"genre_scores_gemma":[0.9184679,0.00016284212,0.07856968,0.000105019826,0.00005157623,0.0011689998,0.0007958768,0.000089939305,0.0005882144],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.94252783,0.035662163,0.0027472144,0.007100145,0.011225119,0.0007374858],"domain_scores_gemma":[0.872424,0.097202085,0.011047608,0.01366161,0.0051431255,0.0005215508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.038839523,0.0011319661,0.0017505876,0.0013015405,0.00042879034,0.0013372202,0.0019226448,0.0016385425,0.000915879],"category_scores_gemma":[0.109195754,0.0009934002,0.0017186153,0.0011471207,0.001121217,0.00087711465,0.00072262797,0.0017717135,0.0004958707],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013278004,0.002567407,0.61979026,0.001350889,0.0047239186,0.0016759529,0.003987158,0.066094436,0.19070671,0.003261909,0.0017357159,0.09082756],"study_design_scores_gemma":[0.0003413034,0.012553504,0.33532608,0.00019299262,0.0011399967,0.0033013006,0.0005335109,0.5047408,0.13484795,0.0030030988,0.0036815465,0.00033799605],"about_ca_topic_score_codex":0.0015654437,"about_ca_topic_score_gemma":0.0010791185,"teacher_disagreement_score":0.038839523,"about_ca_system_score_codex":0.00080775033,"about_ca_system_score_gemma":0.00059853896,"threshold_uncertainty_score":0.20540547},"labels":[],"label_agreement":null},{"id":"W2108781515","doi":"10.1128/jcm.40.11.4010-4014.2002","title":"Molecular Detection and Seroepidemiology of the <i>Chlamydia pneumoniae</i> Bacteriophage (ΦCpn1)","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Biology; Chlamydophila pneumoniae; Virology; Chlamydiaceae; Antibody; Recombinant DNA; Chlamydia; Chlamydiales; Microbiology; Antiserum; Antigen; Chlamydia trachomatis; Gene; Immunology; Genetics","score_opus":0.045224015912822775,"score_gpt":0.340631843828212,"score_spread":0.2954078279153892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108781515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99825376,0.0005386802,0.00052471895,0.000027263237,0.000006999368,0.000014492976,0.00020325973,0.000008100467,0.00042265895],"genre_scores_gemma":[0.9985459,0.00026578156,0.0008000049,0.000022917211,0.000010049574,0.00000902026,0.00022643534,0.0000021834862,0.00011789286],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99956685,0.00009830006,0.000036356974,0.00012601241,0.000106759784,0.00006570402],"domain_scores_gemma":[0.9993254,0.0001800227,0.00022255631,0.00004891884,0.00012100383,0.000102101374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039837006,0.00033282695,0.000248139,0.00065484823,0.00024276256,0.00038865124,0.00017939227,0.0004056805,0.0006330147],"category_scores_gemma":[0.001230425,0.00017534352,0.00012998286,0.00040136778,0.00033456265,0.00014073109,0.0001593375,0.00037045087,0.00018453016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035801975,0.000101451886,0.77531254,0.0001514818,0.000049459642,0.00049930415,0.0003094422,0.00009894028,0.20950668,0.00008869896,0.00024033559,0.013283711],"study_design_scores_gemma":[0.000010022324,0.00050721114,0.97786784,0.000024113813,0.00002417317,0.0036751945,0.0001418773,0.00025346037,0.016573459,0.000027618504,0.00088673737,0.000008265781],"about_ca_topic_score_codex":0.0020861072,"about_ca_topic_score_gemma":0.0010073311,"teacher_disagreement_score":0.0020861072,"about_ca_system_score_codex":0.000256797,"about_ca_system_score_gemma":0.00015283214,"threshold_uncertainty_score":0.004147947},"labels":[],"label_agreement":null},{"id":"W2108794422","doi":"10.1128/jcm.43.4.2018-2020.2005","title":"Bacteremia Caused by <i>Clostridium intestinale</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Bacteremia; Clostridiales; Microbiology; Clostridiaceae; Clostridium; Bacteria; Abdominal pain; Medicine; Biology; Gastroenterology; Antibiotics; Genetics","score_opus":0.05146021075766658,"score_gpt":0.3856589496978595,"score_spread":0.3341987389401929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108794422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98522794,0.0034982113,0.0019903649,0.0016935267,0.0002854028,0.00006101419,0.000063179534,0.00011735494,0.0070630433],"genre_scores_gemma":[0.9970451,0.000868918,0.00075856276,0.00054404966,0.00031463613,0.000010438776,0.000031212196,0.000013053088,0.00041402556],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99966824,0.000054814547,0.00003381935,0.000058727674,0.00004025273,0.00014414245],"domain_scores_gemma":[0.9989409,0.00029641393,0.0003924044,0.000050207767,0.000042256685,0.00027789638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022942512,0.0013641105,0.0006850571,0.0006695706,0.0018077416,0.0011601367,0.000389243,0.0025169873,0.0016060699],"category_scores_gemma":[0.0018724877,0.0008197345,0.0005549238,0.0005380882,0.0010542128,0.00084925373,0.0008789394,0.001912459,0.00061798503],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006069783,0.00006485772,0.016566154,0.00005667677,0.00000930612,0.97806245,0.0003479774,0.00005146668,0.0024906076,0.00013261507,0.00046871876,0.0016884009],"study_design_scores_gemma":[0.000018607678,0.00018481714,0.0090996,0.000029855464,0.000021757278,0.98846763,0.00024455474,0.00012012491,0.0008905944,0.000056004148,0.0008549363,0.000011500454],"about_ca_topic_score_codex":0.0013920001,"about_ca_topic_score_gemma":0.0015985966,"teacher_disagreement_score":0.0025169873,"about_ca_system_score_codex":0.00044688818,"about_ca_system_score_gemma":0.00035724434,"threshold_uncertainty_score":0.005372882},"labels":[],"label_agreement":null},{"id":"W2108805595","doi":"10.1128/jcm.43.8.3840-3850.2005","title":"Identification of Four Fimbria-Encoding Genomic Islands That Are Highly Specific for Verocytotoxin-Producing <i>Escherichia coli</i> Serotype O157 Strains","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Guelph; Public Health Agency of Canada","funders":"Health Canada","keywords":"Serotype; Verocytotoxin; Biology; VTEC; Virulence; Microbiology; Escherichia coli; Virology; Fimbria; Pathogenicity island; Outbreak; Typing; Shiga toxin; Locus (genetics); Genetics; Gene","score_opus":0.06902454701978653,"score_gpt":0.3523285472791299,"score_spread":0.2833040002593433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108805595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969009,0.00020879174,0.0018389968,0.000042861775,0.00000776126,0.000027126585,0.00038623507,0.000025441108,0.0005619052],"genre_scores_gemma":[0.99059063,0.00022436804,0.004925693,0.000090904025,0.000008893998,0.000032228996,0.0031985207,0.000026832384,0.00090196094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998951,0.00001176863,0.000008786098,0.000026933682,0.000027400936,0.000029918707],"domain_scores_gemma":[0.99974126,0.00008177995,0.00007537429,0.000025040741,0.00003296834,0.000043537926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084344385,0.00031278215,0.00025102374,0.00031068068,0.000111932815,0.00023161377,0.00016604814,0.0002798951,0.00058332685],"category_scores_gemma":[0.00028916914,0.00016743389,0.0002941175,0.00019167148,0.00019895537,0.00008822069,0.00023575407,0.00037109805,0.00025414137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043391658,0.000013743396,0.0010676011,0.000018003231,0.0000031734041,0.00003313421,0.00002252489,0.000026223543,0.99776995,0.000016764143,0.000013457333,0.0009720481],"study_design_scores_gemma":[0.000027346856,0.00039864454,0.24407671,0.000029417453,0.00009298218,0.0012140517,0.0002466638,0.0018195474,0.7488436,0.00007926678,0.0031522375,0.000019564075],"about_ca_topic_score_codex":0.0014089327,"about_ca_topic_score_gemma":0.0015430666,"teacher_disagreement_score":0.0014089327,"about_ca_system_score_codex":0.00022084817,"about_ca_system_score_gemma":0.00018725672,"threshold_uncertainty_score":0.002801478},"labels":[],"label_agreement":null},{"id":"W2109321313","doi":"10.1128/jcm.00137-13","title":"Systematic Review and Meta-Analysis of a Urine-Based Pneumococcal Antigen Test for Diagnosis of Community-Acquired Pneumonia Caused by Streptococcus pneumoniae","year":2013,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"McGill University Health Centre","keywords":"Community-acquired pneumonia; Medicine; Streptococcus pneumoniae; Internal medicine; Pneumonia; Meta-analysis; Blood culture; Gold standard (test); Gastroenterology; Intensive care medicine; Antibiotics; Microbiology; Biology","score_opus":0.164606559348009,"score_gpt":0.44396781930571677,"score_spread":0.2793612599577078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109321313","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0036190776,0.9941362,0.00046091998,0.00021549469,0.00021430376,0.00033863442,0.00064904685,0.000029292534,0.0003369602],"genre_scores_gemma":[0.146371,0.84621245,0.0025378019,0.0012738077,0.0003239745,0.0016027726,0.0011317295,0.000053079148,0.0004934416],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.988405,0.0058975057,0.0029162571,0.0011175441,0.0012852505,0.00037846796],"domain_scores_gemma":[0.9776924,0.016591191,0.0028905778,0.00068207167,0.001824631,0.00031915752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013797753,0.0030457422,0.021314291,0.007198179,0.00081333093,0.0036594344,0.0023941898,0.0025417167,0.0046611764],"category_scores_gemma":[0.037668306,0.001650392,0.040103123,0.0075056306,0.0006917689,0.0021029888,0.0016886764,0.0025762783,0.00050171296],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016321442,0.00002427257,0.0019472373,0.3998062,0.58702815,0.00012533122,0.000061822786,0.00043967774,0.00017098624,0.0001310112,0.00077436917,0.00785881],"study_design_scores_gemma":[0.00047855335,0.00013440702,0.0020315722,0.023873799,0.9715494,0.00007192232,0.000027487142,0.00013522756,0.00009052277,0.00015027657,0.0014370595,0.000019802173],"about_ca_topic_score_codex":0.010061521,"about_ca_topic_score_gemma":0.019930977,"teacher_disagreement_score":0.021314291,"about_ca_system_score_codex":0.003391314,"about_ca_system_score_gemma":0.0048833406,"threshold_uncertainty_score":0.07297033},"labels":[],"label_agreement":null},{"id":"W2109427599","doi":"10.1128/jcm.43.9.4585-4591.2005","title":"Use of a Multiplex Molecular Beacon Platform for Rapid Detection of Methicillin and Vancomycin Resistance in <i>Staphylococcus aureus</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"U.S. Food and Drug Administration","keywords":"Virulence; Staphylococcus aureus; Vancomycin; Microbiology; SCCmec; Panton–Valentine leukocidin; Drug resistance; Multiplex; Methicillin-resistant Staphylococcus aureus; Antibiotic resistance; Leukocidin; Multiplex polymerase chain reaction; Biology; Antibiotics; Virulence factor; Molecular beacon; Virology; Gene; Bacteria; Polymerase chain reaction; Bioinformatics; Genetics","score_opus":0.06400401018643778,"score_gpt":0.36156500420710536,"score_spread":0.2975609940206676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109427599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.57452756,0.0037401763,0.41343924,0.0010261423,0.00042053856,0.000473518,0.0004504671,0.0018610784,0.004061203],"genre_scores_gemma":[0.6259593,0.0013003907,0.3668535,0.00043320257,0.00007388414,0.000426279,0.0005782665,0.000056332643,0.0043188855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984951,0.0004335895,0.000088174784,0.00045374339,0.00035132043,0.0001780276],"domain_scores_gemma":[0.9990941,0.00039481313,0.00020591561,0.0000607394,0.00013697498,0.000107439504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014287559,0.00084989367,0.0005610021,0.0010254263,0.00037322144,0.0006691362,0.0006858021,0.0015228514,0.0011101972],"category_scores_gemma":[0.0019049903,0.0005448047,0.00041937557,0.00036004954,0.0004990175,0.00068171986,0.00065004284,0.0009316857,0.000588712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013795197,0.00006882173,0.0005364197,0.00006608481,0.000011659512,0.000085399886,0.00007931486,0.00033622465,0.98840266,0.00036709986,0.00018942998,0.009718982],"study_design_scores_gemma":[0.00003446274,0.00089252746,0.0013392918,0.000024567433,0.00003476372,0.0009329345,0.000044148983,0.010970616,0.98211193,0.00023312621,0.0033396543,0.000041995605],"about_ca_topic_score_codex":0.00041752827,"about_ca_topic_score_gemma":0.0006073583,"teacher_disagreement_score":0.0015228514,"about_ca_system_score_codex":0.0004394649,"about_ca_system_score_gemma":0.0004138811,"threshold_uncertainty_score":0.007556081},"labels":[],"label_agreement":null},{"id":"W2109680788","doi":"10.1128/jcm.00382-10","title":"Clinical Performance of the PreTect HPV-Proofer E6/E7 mRNA Assay in Comparison with That of the Hybrid Capture 2 Test for Identification of Women at Risk of Cervical Cancer","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dr. H. Bliss Murphy Cancer Centre; Baker Hughes (Canada); St. John’s Health Sciences Centre; Thunder Bay Regional Health Sciences Centre; Queen Elizabeth II Health Sciences Centre; Centre Hospitalier de l’Université de Montréal; Royal University Hospital; Memorial University of Newfoundland","funders":"","keywords":"Colposcopy; Cervical intraepithelial neoplasia; Cervical cancer; Cytology; Medicine; Internal medicine; Genotyping; Papillomaviridae; Gynecology; Cancer; Confidence interval; Cervical screening; Liquid-based cytology; Oncology; Genotype; Pathology; Biology; Gene","score_opus":0.04970164342953846,"score_gpt":0.4033021620685864,"score_spread":0.3536005186390479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109680788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964193,0.0012984469,0.0006041968,0.00005205145,0.000020403499,0.00004814179,0.00018337126,0.000025352567,0.0013488114],"genre_scores_gemma":[0.99847275,0.00019620509,0.0005066718,0.000047656882,0.000021633183,0.000024445344,0.0002502141,0.000005378109,0.0004750331],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975132,0.0010264344,0.00016255658,0.0006363255,0.0005587416,0.00010271634],"domain_scores_gemma":[0.9959592,0.002118884,0.00065704907,0.0003380572,0.00063769624,0.00028914254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002854815,0.00041551617,0.00060618116,0.000700066,0.00020511853,0.0006431178,0.00033329465,0.0007204524,0.0013899071],"category_scores_gemma":[0.0066650123,0.0003172032,0.00028087324,0.00048683537,0.00032891307,0.00052460836,0.00029458365,0.0004163204,0.00058054365],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005512102,0.00040379318,0.9620364,0.000082811144,0.00013059295,0.00027276424,0.00020405617,0.0003353655,0.014072526,0.0000443145,0.00029699257,0.016608268],"study_design_scores_gemma":[0.00009335626,0.006768916,0.986005,0.000009898484,0.000084636704,0.0012154797,0.00007194672,0.0016377303,0.0034642457,0.000023132696,0.0006082539,0.000017437213],"about_ca_topic_score_codex":0.0006921465,"about_ca_topic_score_gemma":0.0007558326,"teacher_disagreement_score":0.002854815,"about_ca_system_score_codex":0.00028361825,"about_ca_system_score_gemma":0.00023203835,"threshold_uncertainty_score":0.0150978565},"labels":[],"label_agreement":null},{"id":"W2110305221","doi":"10.1128/jcm.00725-06","title":"Multilocus Sequence Typing of Historical <i>Burkholderia pseudomallei</i> Isolates Collected in Southeast Asia from 1964 to 1967 Provides Insight into the Epidemiology of Melioidosis","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Burkholderia infections and melioidosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary General Hospital; University of Calgary","funders":"Faculty of Tropical Medicine, Mahidol University; Canadian Institutes of Health Research; Mahidol University; Imperial College London; Wellcome Trust","keywords":"Multilocus sequence typing; Burkholderia pseudomallei; Melioidosis; Biology; Typing; Population; Molecular epidemiology; Phylogenetic tree; Microbiology; Population genetics; Genetics; Genotype; Gene; Bacteria; Demography","score_opus":0.06662797376606612,"score_gpt":0.3520495181919471,"score_spread":0.28542154442588097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110305221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961025,0.000041953015,0.000060511287,0.000004353988,9.782743e-7,0.000002395686,0.000164098,0.0000015527405,0.00011395075],"genre_scores_gemma":[0.99856275,0.000105936764,0.00027144884,0.000008108804,0.00000389002,0.0000026036332,0.0009257278,0.0000020018224,0.00011744597],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99987304,0.000015784719,0.000021130469,0.000029815395,0.000025854553,0.000034436514],"domain_scores_gemma":[0.999522,0.000053482385,0.00017682991,0.000037029844,0.000108679524,0.00010207491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017214344,0.00017869251,0.00014419234,0.00092402665,0.00025384617,0.0003849367,0.000116801006,0.00011245424,0.00035751128],"category_scores_gemma":[0.00049389113,0.00013360767,0.00012659753,0.0007930282,0.00021197245,0.00021593191,0.00019601267,0.00018291465,0.00015389397],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018208327,0.00003400146,0.94204295,0.000028615232,0.000022901706,0.0007164609,0.0011277931,0.00016502551,0.04862209,0.000022579892,0.00008701228,0.006948474],"study_design_scores_gemma":[0.0000018305099,0.000081391685,0.9947008,0.0000059088225,0.000012757082,0.00062209804,0.00037166144,0.00009005382,0.003519664,0.0000055921314,0.0005846573,0.0000036487206],"about_ca_topic_score_codex":0.010467061,"about_ca_topic_score_gemma":0.021062098,"teacher_disagreement_score":0.010467061,"about_ca_system_score_codex":0.0003824583,"about_ca_system_score_gemma":0.0001922484,"threshold_uncertainty_score":0.020812273},"labels":[],"label_agreement":null},{"id":"W2110431672","doi":"10.1128/jcm.02177-07","title":"Herpes Simplex Virus Type 2 Displays Atypical Melting-Temperature Profiles at Low Viral Titers","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Virology; Herpes simplex virus; Titer; Virus; Viral disease; Biology","score_opus":0.04522964062746735,"score_gpt":0.37082157159587636,"score_spread":0.325591930968409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110431672","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96294445,0.0032788035,0.028413877,0.00013665955,0.00007841975,0.00009005912,0.0006028515,0.00042902117,0.004025823],"genre_scores_gemma":[0.98660177,0.00071357965,0.010616469,0.0000828749,0.000018127033,0.00009269838,0.0005535468,0.00006616683,0.0012548341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987307,0.0004303636,0.00013745423,0.0002269867,0.00033634203,0.00013803264],"domain_scores_gemma":[0.99829835,0.0007270549,0.0003691955,0.00022560527,0.00028231982,0.000097591124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091229676,0.000561319,0.00068408326,0.00050198537,0.00025637943,0.0007709633,0.0003046345,0.00052186305,0.0011981827],"category_scores_gemma":[0.0018935861,0.00036375562,0.0003083113,0.0005472442,0.00036861564,0.0003701155,0.00040481804,0.000644742,0.0010557858],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028546256,0.000036056797,0.0033027504,0.00008382609,0.000011748449,0.00011127744,0.00009070912,0.00012299119,0.99145293,0.000087287204,0.0000890419,0.0043259785],"study_design_scores_gemma":[0.000011410324,0.0005472857,0.014879373,0.00001610586,0.000026320608,0.0015642451,0.00009737321,0.0011116471,0.97972727,0.0002617576,0.0017377317,0.00001958154],"about_ca_topic_score_codex":0.00032661634,"about_ca_topic_score_gemma":0.00041679156,"teacher_disagreement_score":0.0011981827,"about_ca_system_score_codex":0.00021598978,"about_ca_system_score_gemma":0.00017541142,"threshold_uncertainty_score":0.0048247576},"labels":[],"label_agreement":null},{"id":"W2110562203","doi":"10.1128/jcm.40.3.881-885.2002","title":"Diagnostic Detection of Human Immunodeficiency Virus Type 1 Antibodies in Urine: a Brazilian Study","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôpital du Saint-Sacrement","funders":"Fundação Oswaldo Cruz; Ministério da Saúde; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Urine; Serology; Immunoassay; Antibody; Medicine; Virology; Immunology; Human immunodeficiency virus (HIV); Biology; Internal medicine","score_opus":0.05313880882477974,"score_gpt":0.38056611513624305,"score_spread":0.32742730631146333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110562203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99484766,0.0015847891,0.0005920527,0.00017917418,0.000018890909,0.000076783974,0.00018685866,0.000011346631,0.0025024288],"genre_scores_gemma":[0.9978104,0.0009669043,0.00064359145,0.00017587532,0.000013455789,0.00002913013,0.00016985257,0.0000072145044,0.00018351681],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990706,0.00039549248,0.00008852049,0.00014288125,0.00019300223,0.00010956204],"domain_scores_gemma":[0.9972391,0.0006373005,0.0005749889,0.0002527131,0.0009769341,0.00031884236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00225513,0.0008748419,0.0006330331,0.0015682105,0.00062390574,0.00095188065,0.00042005035,0.00057168823,0.0007812875],"category_scores_gemma":[0.0066833505,0.0005383334,0.00041513448,0.0010953393,0.001099871,0.00039480173,0.00066651014,0.0003347873,0.00022437336],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015954861,0.00020741441,0.9764879,0.00022390106,0.00009686705,0.0008885571,0.0030325784,0.00006243278,0.0052164122,0.00015536399,0.00020393095,0.013265094],"study_design_scores_gemma":[0.000074230236,0.0010664946,0.9788942,0.00023518417,0.0002514949,0.0056352466,0.004281123,0.0007557907,0.0016284682,0.00020948496,0.00693051,0.000037795697],"about_ca_topic_score_codex":0.030922879,"about_ca_topic_score_gemma":0.03442077,"teacher_disagreement_score":0.030922879,"about_ca_system_score_codex":0.00078876707,"about_ca_system_score_gemma":0.0007340078,"threshold_uncertainty_score":0.061485767},"labels":[],"label_agreement":null},{"id":"W2110720953","doi":"10.1128/jcm.05445-11","title":"Epidemic Methicillin-Susceptible Staphylococcus aureus Lineages Are the Main Cause of Infections at an Iranian University Hospital","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Staphylococcus aureus; Microbiology; Staphylococcal infections; Cross infection; Biology; Methicillin-resistant Staphylococcus aureus; Virology; Medicine; Bacteria; Intensive care medicine; Genetics","score_opus":0.08596736378963893,"score_gpt":0.3564223906056924,"score_spread":0.2704550268160535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110720953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976648,0.0006101676,0.00013759278,0.00021740931,0.000019204985,0.000018555073,0.00009056523,0.000018816272,0.0012229431],"genre_scores_gemma":[0.99888784,0.00030361404,0.00014343872,0.00011601961,0.000035512243,0.0000065268723,0.000083174134,0.000002668419,0.000421284],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999521,0.000083711006,0.00003738657,0.000056760768,0.00012650451,0.00017453826],"domain_scores_gemma":[0.9994011,0.00007174413,0.00018879524,0.000028587585,0.00008999966,0.0002198419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028074873,0.00040940352,0.00025887846,0.0005491242,0.0011392577,0.0004799725,0.00024152646,0.00051640545,0.005969625],"category_scores_gemma":[0.0011842597,0.00020201824,0.00025769838,0.00059738004,0.0002680153,0.00048734166,0.00044798027,0.00058398495,0.00067798235],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016870638,0.00017127916,0.95706165,0.0000890354,0.000052424388,0.0060000657,0.0010164648,0.000102988386,0.004659417,0.00013034619,0.0018016649,0.028745929],"study_design_scores_gemma":[0.000018224411,0.00030161915,0.97351474,0.000044911663,0.00004360766,0.016835628,0.002178827,0.00018928706,0.0022483529,0.00014194276,0.004456405,0.00002646962],"about_ca_topic_score_codex":0.002530069,"about_ca_topic_score_gemma":0.004855977,"teacher_disagreement_score":0.005969625,"about_ca_system_score_codex":0.00039661734,"about_ca_system_score_gemma":0.0010405014,"threshold_uncertainty_score":0.019970357},"labels":[],"label_agreement":null},{"id":"W2110748437","doi":"10.1128/jcm.43.7.3213-3220.2005","title":"Characterization of a Shiga Toxin-, Intimin-, and Enterotoxin Hemolysin-Producing <i>Escherichia coli</i> ONT:H25 Strain Commonly Isolated from Healthy Cattle","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Idaho Beef Council; Eunice Kennedy Shriver National Institute of Child Health and Human Development; U.S. Department of Agriculture","keywords":"Intimin; Microbiology; Escherichia coli; Hemolysin; Shiga-like toxin; Shiga toxin; Enterotoxin; Strain (injury); Biology; Toxin; Enterobacteriaceae; Heat-stable enterotoxin; Bacteria; Virulence; Genetics; Gene","score_opus":0.02682090387976088,"score_gpt":0.3357352009557312,"score_spread":0.3089142970759703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110748437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997141,0.00006187583,0.0000669431,0.0000050175586,0.000001310871,0.0000035988203,0.00006116656,0.0000014516108,0.00008451916],"genre_scores_gemma":[0.9988802,0.00010814526,0.000332589,0.00002370388,0.0000055412766,0.0000033706283,0.00041859393,0.0000017424163,0.00022609204],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99978656,0.000018713119,0.000017952487,0.000048107668,0.000070344155,0.000058328867],"domain_scores_gemma":[0.99963343,0.00004226667,0.00011092633,0.000014198475,0.000099953024,0.00009921794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014187706,0.00030351983,0.00019621519,0.00067423645,0.0002648962,0.00057832815,0.00019027284,0.0002764437,0.00032321888],"category_scores_gemma":[0.0003656887,0.00014608068,0.00013294708,0.00043848428,0.0002463977,0.00012465396,0.00013657013,0.000120482706,0.00011309043],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030839967,0.00011737266,0.46923155,0.00008639756,0.000040943785,0.0011755986,0.00059910456,0.0001210905,0.52186584,0.000025762287,0.000092524744,0.0063355197],"study_design_scores_gemma":[0.000005616484,0.00025900474,0.9821783,0.000011567716,0.000025614512,0.001445593,0.0005883946,0.00022084995,0.014815589,0.000006198712,0.000437892,0.0000054518764],"about_ca_topic_score_codex":0.020424213,"about_ca_topic_score_gemma":0.024075944,"teacher_disagreement_score":0.020424213,"about_ca_system_score_codex":0.00035038948,"about_ca_system_score_gemma":0.00032376937,"threshold_uncertainty_score":0.04061067},"labels":[],"label_agreement":null},{"id":"W2111017750","doi":"10.1128/jcm.38.12.4412-4419.2000","title":"Antigenic Diversity of <i>Haemophilus somnus</i> Lipooligosaccharide: Phase-Variable Accessibility of the Phosphorylcholine Epitope","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Epitope; Phase variation; Biology; Antigenic variation; Antigen; Monoclonal antibody; Phosphorylcholine; Microbiology; Haemophilus; Oligosaccharide; Antibody; Virulence; Bacteria; Genetics; Biochemistry; Gene","score_opus":0.04659795208210589,"score_gpt":0.37281233659607055,"score_spread":0.3262143845139647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111017750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992378,0.0001458992,0.0002734439,0.000007912791,0.00000145683,0.000004023169,0.000051401967,0.0000029933146,0.00027510594],"genre_scores_gemma":[0.9993787,0.000066454464,0.00026924943,0.000014267181,0.000003236501,0.0000026357422,0.00015574018,0.0000021094766,0.00010771565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99991107,0.00001625983,0.000011159148,0.000020579144,0.000019220179,0.000021628055],"domain_scores_gemma":[0.99984264,0.000023465753,0.00006127018,0.000010254324,0.00003327303,0.000029052042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012813826,0.00021211742,0.00010030513,0.00023075058,0.000085816326,0.00023186476,0.00012654503,0.00014866075,0.0003543024],"category_scores_gemma":[0.0001812706,0.00007532625,0.0001353946,0.00016252381,0.00015342043,0.00016021487,0.00015162882,0.00013466313,0.000096126336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080073005,0.000008712768,0.005886403,0.00002544233,0.0000072231255,0.00005255184,0.000049638533,0.000039586204,0.99277425,0.000020210344,0.000011941207,0.0010439054],"study_design_scores_gemma":[0.000018597997,0.0011136936,0.4153064,0.000018014473,0.0000742758,0.0018512616,0.00042705532,0.0014712558,0.57737046,0.00012688496,0.0022051185,0.00001704953],"about_ca_topic_score_codex":0.0008779939,"about_ca_topic_score_gemma":0.0007120822,"teacher_disagreement_score":0.0008779939,"about_ca_system_score_codex":0.00015767588,"about_ca_system_score_gemma":0.000096390235,"threshold_uncertainty_score":0.0017457604},"labels":[],"label_agreement":null},{"id":"W2111022993","doi":"10.1128/jcm.02284-14","title":"Diagnosing Rhodococcus equi Infections in a Setting Where Tuberculosis Is Highly Endemic: a Double Challenge","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infectious Disease Case Reports and Treatments","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Wellcome Trust","keywords":"Rhodococcus equi; Tuberculosis; Incidence (geometry); Human immunodeficiency virus (HIV); Virology; AIDS-Related Opportunistic Infections; Medicine; Biology; Immunology; Microbiology; Viral disease; Sida; Pathology","score_opus":0.09160710427206901,"score_gpt":0.4150933832884373,"score_spread":0.3234862790163683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111022993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72710055,0.080171384,0.043138333,0.09541397,0.0057052756,0.0009047103,0.00030724148,0.00064993475,0.046608526],"genre_scores_gemma":[0.92712516,0.02758708,0.024383565,0.0112005165,0.0076113045,0.00011871892,0.00013868175,0.00008964776,0.0017452339],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9971096,0.0010240386,0.00045987085,0.00023662485,0.0005530652,0.0006167682],"domain_scores_gemma":[0.9930697,0.0031521136,0.0012027051,0.00029049919,0.0010266318,0.0012584351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031441613,0.0015668962,0.001556147,0.0026824828,0.0023102665,0.0035709604,0.0019347223,0.006258593,0.0021461197],"category_scores_gemma":[0.014897613,0.001099586,0.00071798085,0.00086488633,0.002537885,0.006063999,0.0026636675,0.005633368,0.0015637521],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013604066,0.00021010733,0.069368534,0.00062848796,0.000047388643,0.8695086,0.0017273081,0.00047647837,0.0067719105,0.00096859393,0.0066881785,0.04346832],"study_design_scores_gemma":[0.000014177982,0.0001383675,0.00689914,0.0006042307,0.000031333162,0.9804048,0.0032084899,0.0006150491,0.001714266,0.0013314892,0.004998328,0.000040395124],"about_ca_topic_score_codex":0.0016413766,"about_ca_topic_score_gemma":0.0028942174,"teacher_disagreement_score":0.006258593,"about_ca_system_score_codex":0.0011199286,"about_ca_system_score_gemma":0.0012693355,"threshold_uncertainty_score":0.016628087},"labels":[],"label_agreement":null},{"id":"W2111165268","doi":"10.1128/jcm.00509-13","title":"Identification by 16S rRNA Gene Sequencing of an Actinomyces hongkongensis Isolate Recovered from a Patient with Pelvic Actinomycosis","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Actinomyces; Actinomycosis; 16S ribosomal RNA; Biology; Microbiology; Ribosomal RNA; Gene; Bacteria; Pathology; Medicine; Genetics","score_opus":0.02621526935749342,"score_gpt":0.3117783930708347,"score_spread":0.2855631237133413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111165268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964149,0.0003953028,0.0012585236,0.00025412522,0.0000361218,0.000048137623,0.0002888715,0.000031397478,0.0012726224],"genre_scores_gemma":[0.99762267,0.00045819723,0.0010365795,0.00011484305,0.000026232452,0.000009101071,0.00022764746,0.000012461988,0.00049220526],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.99984205,0.0000114241675,0.00003378925,0.000031012787,0.00004359126,0.000038148748],"domain_scores_gemma":[0.99970335,0.00007678049,0.00005993841,0.000023188473,0.000056101424,0.00008053252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000084546264,0.00047783542,0.00048439292,0.00076989544,0.00057995954,0.00047294886,0.00024068831,0.0006036493,0.00056277297],"category_scores_gemma":[0.000734337,0.00027179703,0.00027332763,0.0005757465,0.00040185224,0.00026041054,0.00032880926,0.0005522378,0.00037206407],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042431406,0.00033516326,0.15012202,0.0002401846,0.000035798952,0.59362394,0.0022671903,0.0007156432,0.22748171,0.0002940508,0.0009299726,0.023530057],"study_design_scores_gemma":[0.00003631338,0.0010416935,0.32155675,0.00013039778,0.0001660723,0.5659522,0.004622877,0.0020028162,0.097467184,0.0003213204,0.0066293804,0.00007300762],"about_ca_topic_score_codex":0.0031827544,"about_ca_topic_score_gemma":0.0027162847,"teacher_disagreement_score":0.0031827544,"about_ca_system_score_codex":0.0003097423,"about_ca_system_score_gemma":0.00038675228,"threshold_uncertainty_score":0.0063284636},"labels":[],"label_agreement":null},{"id":"W2111317575","doi":"10.1128/jcm.40.12.4466-4471.2002","title":"M Types of Group A Streptococcal Isolates Submitted to the National Centre for Streptococcus (Canada) from 1993 to 1999","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"Health Canada","keywords":"Serotype; Biology; Streptococcus; Population; Streptococcaceae; Streptococcus pyogenes; Myeloma protein; Microbiology; Medicine; Genetics; Bacteria; Antibody; Antibiotics","score_opus":0.05757047240567009,"score_gpt":0.3534272089287093,"score_spread":0.29585673652303923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111317575","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9817184,0.0016874498,0.00019866614,0.00015208022,0.00003596077,0.000119633056,0.011970383,0.000036628546,0.0040808823],"genre_scores_gemma":[0.97961515,0.002094458,0.0015621341,0.00022994984,0.000026519148,0.00006219144,0.012252354,0.000018118842,0.0041391253],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989912,0.000030163994,0.00005832667,0.00008688079,0.0006182068,0.00021520334],"domain_scores_gemma":[0.99874216,0.00004948405,0.00021546076,0.000026187608,0.00077994436,0.00018669172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040906842,0.00054401124,0.00034796412,0.0026567033,0.002030301,0.0006509533,0.00060856063,0.00034881153,0.0011176473],"category_scores_gemma":[0.001956774,0.00029942358,0.00031506753,0.0031128044,0.00037106534,0.00017888857,0.000430459,0.00037788658,0.00026280046],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010026342,0.00006998485,0.93748045,0.00031054454,0.000108452885,0.0011229273,0.0016694495,0.00027342516,0.01313437,0.000116460746,0.008437391,0.036273915],"study_design_scores_gemma":[0.000013427901,0.00008775987,0.99106616,0.00003895688,0.000035517423,0.00046953966,0.0004663506,0.0001368176,0.0016756672,0.000013696242,0.0059846328,0.000011529411],"about_ca_topic_score_codex":0.93444115,"about_ca_topic_score_gemma":0.9591885,"teacher_disagreement_score":0.06555885,"about_ca_system_score_codex":0.009229171,"about_ca_system_score_gemma":0.008540167,"threshold_uncertainty_score":0.13188982},"labels":[],"label_agreement":null},{"id":"W2111524511","doi":"10.1128/jcm.02659-12","title":"Short-Term Stability of Pathogen-Specific Nucleic Acid Targets in Clinical Samples","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"","keywords":"Nucleic acid; DNA; RNA; Pathogen; Biology; Molecular biology; Polymerase chain reaction; Chemistry; Biochemistry; Microbiology; Gene","score_opus":0.07276778158853224,"score_gpt":0.3872306207183527,"score_spread":0.3144628391298204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111524511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98788387,0.0034593304,0.0066661327,0.000121477235,0.00007416979,0.000081889455,0.0006800537,0.000080825725,0.0009522817],"genre_scores_gemma":[0.9900176,0.0009586157,0.0059172255,0.00010564501,0.000055591376,0.00018149566,0.0015380909,0.00003547328,0.0011903946],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982488,0.00046470997,0.00019188218,0.0004870444,0.0004680931,0.00013944278],"domain_scores_gemma":[0.9973137,0.0006786571,0.00054395513,0.00028393834,0.0010247288,0.00015511263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019180358,0.0004548227,0.0005786298,0.00047618942,0.00034454823,0.00094348117,0.00035224028,0.00059272913,0.0012479923],"category_scores_gemma":[0.004261236,0.00028719642,0.0002691746,0.0005536613,0.0005183682,0.0005638298,0.00037035797,0.00067202776,0.0008939991],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011919979,0.00007700191,0.008212437,0.00010684297,0.00004044325,0.00008012295,0.00027472523,0.0001518035,0.9841007,0.000043060074,0.00006414715,0.0056566033],"study_design_scores_gemma":[0.000029811394,0.0032419274,0.07331737,0.000049889662,0.00016340213,0.00083273003,0.00037798894,0.0018228122,0.9178076,0.00016076468,0.0021554977,0.000040313666],"about_ca_topic_score_codex":0.0004563705,"about_ca_topic_score_gemma":0.0004384738,"teacher_disagreement_score":0.0019180358,"about_ca_system_score_codex":0.0002947609,"about_ca_system_score_gemma":0.0003341352,"threshold_uncertainty_score":0.010143638},"labels":[],"label_agreement":null},{"id":"W2111533008","doi":"10.1128/jcm.01716-07","title":"Capsular Polysaccharide Synthesis Regions in <i>Klebsiella pneumoniae</i> Serotype K57 and a New Capsular Serotype","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Far Eastern Memorial Hospital; National Taiwan University Hospital","keywords":"Serotype; Biology; Pyogenic liver abscess; Klebsiella pneumoniae; Microbiology; Bacterial capsule; Complementation; Virology; Genotype; Typing; Strain (injury); Gene; Klebsiella; Streptococcus pneumoniae; Polymerase chain reaction; Gene cluster; Liver abscess; Virulence; Genetics; Escherichia coli; Abscess; Antibiotics; Phenotype","score_opus":0.04407957420365074,"score_gpt":0.3141262005511558,"score_spread":0.2700466263475051,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111533008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996735,0.00007678677,0.00012808556,0.000007489231,0.0000023620407,0.000003646856,0.00003754263,0.0000017798529,0.000068749345],"genre_scores_gemma":[0.9984011,0.00010184869,0.0007698944,0.000032168606,0.000006160641,0.000012721602,0.0005384415,0.0000048508214,0.00013267418],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99984527,0.000018376737,0.00002738716,0.000040109553,0.000030210751,0.000038672802],"domain_scores_gemma":[0.9996001,0.00007961286,0.00016264846,0.00004796233,0.00006177874,0.000047963706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001239466,0.00030124985,0.00023836074,0.00029205895,0.00012230923,0.00024331541,0.0001741482,0.00026497425,0.0006171095],"category_scores_gemma":[0.0005401588,0.0002307671,0.00042479308,0.00026199542,0.00022212179,0.00016323512,0.00025361998,0.0002629303,0.00020126633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048697335,0.00007857102,0.09955128,0.00012122488,0.00004724003,0.0009860257,0.00036103005,0.00012752741,0.8936161,0.000046317622,0.000044311506,0.0045335344],"study_design_scores_gemma":[0.000089544614,0.0017874645,0.7571948,0.000061613995,0.00022834814,0.0074491114,0.0012931221,0.00093653036,0.22923034,0.000103737744,0.0015934665,0.000031874388],"about_ca_topic_score_codex":0.0016186938,"about_ca_topic_score_gemma":0.001415297,"teacher_disagreement_score":0.0016186938,"about_ca_system_score_codex":0.00021323047,"about_ca_system_score_gemma":0.00021010093,"threshold_uncertainty_score":0.0032185316},"labels":[],"label_agreement":null},{"id":"W2111704428","doi":"10.1128/jcm.05211-11","title":"Prevalence of Shiga Toxin-Producing Escherichia coli as Detected by Enzyme-Linked Immunoassays and Real-Time PCR during the Summer Months in Northern Alberta, Canada","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Escherichia coli; Microbiology; Enterobacteriaceae; Toxin; Diarrhea; Shiga toxin; Feces; Shiga-like toxin; Biology; Medicine; Internal medicine; Gene; Biochemistry","score_opus":0.01835702589890279,"score_gpt":0.28397595859039465,"score_spread":0.26561893269149184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111704428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748296,0.00044494876,0.00008484463,0.000050979237,0.000005142557,0.000011239824,0.0006279575,0.000010190491,0.0012817275],"genre_scores_gemma":[0.9976956,0.0003654958,0.00022680032,0.00003580694,0.0000036869856,0.000006011178,0.00042231206,0.0000026604218,0.0012415489],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994886,0.000039753413,0.000022587994,0.00007662568,0.00022904779,0.00014331013],"domain_scores_gemma":[0.99905723,0.00007511232,0.00014692555,0.000016087452,0.00043077947,0.000273865],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040796513,0.00032566985,0.00028008356,0.0013483487,0.0011757409,0.0009138606,0.00067391817,0.00027350074,0.0010712807],"category_scores_gemma":[0.0006707602,0.0003211474,0.0001798981,0.0014769526,0.0006634415,0.00017866745,0.0002747327,0.00025025738,0.00014295487],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002711083,0.00005437265,0.9850144,0.000058951082,0.000043732252,0.0005026488,0.001661317,0.00021531068,0.0043437374,0.00005481248,0.00071502215,0.0070646247],"study_design_scores_gemma":[0.000004457705,0.00002994336,0.99813986,0.000011332727,0.000010330716,0.00010917025,0.0010658129,0.00013122488,0.00019409247,0.0000050167478,0.0002932448,0.00000566955],"about_ca_topic_score_codex":0.98280245,"about_ca_topic_score_gemma":0.9923152,"teacher_disagreement_score":0.01719755,"about_ca_system_score_codex":0.010608058,"about_ca_system_score_gemma":0.0068347673,"threshold_uncertainty_score":0.07696724},"labels":[],"label_agreement":null},{"id":"W2111782347","doi":"10.1128/jcm.01752-07","title":"Phylogenetic Backgrounds and Virulence Profiles of Atypical Enteropathogenic <i>Escherichia coli</i> Strains from a Case-Control Study Using Multilocus Sequence Typing and DNA Microarray Analysis","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Multilocus sequence typing; Biology; Phylogenetic tree; Virulence; Pulsed-field gel electrophoresis; Typing; Serotype; Microbiology; Genetics; Phylogenetics; Escherichia coli; Genotype; Gene","score_opus":0.05904427221113442,"score_gpt":0.35532527519582124,"score_spread":0.29628100298468685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111782347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997354,0.00005499868,0.00010066091,0.000004638463,0.000002133765,0.0000069964794,0.000023596598,9.581298e-7,0.00007054391],"genre_scores_gemma":[0.99954116,0.000055599947,0.00021424051,0.000010206825,0.000007978955,0.0000092541695,0.00010843708,0.0000020734287,0.000051064413],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99903667,0.00019413186,0.00011970615,0.0003291406,0.00016871456,0.00015167284],"domain_scores_gemma":[0.99913687,0.00020785126,0.00026300608,0.00010587623,0.00012647254,0.0001599649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063585356,0.0005604508,0.0005113074,0.001013028,0.00067381765,0.0005523428,0.00031493418,0.0004885675,0.00089196983],"category_scores_gemma":[0.0019885234,0.0005026945,0.00036279493,0.0005329504,0.0006533777,0.00036590642,0.0004128129,0.00042669266,0.00013591109],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029074028,0.000115395094,0.99016446,0.000023198976,0.000048496007,0.001798441,0.0005437919,0.00003310157,0.0051042596,0.000031393363,0.00006652177,0.0017801775],"study_design_scores_gemma":[0.000017519162,0.0003587909,0.9907353,0.000009913744,0.00005880097,0.007083335,0.00061338494,0.00018224561,0.0006458892,0.000016689917,0.00026921957,0.000008974731],"about_ca_topic_score_codex":0.0063555553,"about_ca_topic_score_gemma":0.004572616,"teacher_disagreement_score":0.0063555553,"about_ca_system_score_codex":0.000458333,"about_ca_system_score_gemma":0.00024301937,"threshold_uncertainty_score":0.012637138},"labels":[],"label_agreement":null},{"id":"W2111940765","doi":"10.1128/jcm.00507-11","title":"Fading of Auramine-Stained Mycobacterial Smears and Implications for External Quality Assurance","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University; Montreal Clinical Research Institute; University of Alberta","funders":"Canadian Institutes of Health Research; European Commission","keywords":"Quality assurance; Fading; Medicine; Biology; Pathology; External quality assessment; Computer science; Telecommunications","score_opus":0.17622745413950971,"score_gpt":0.4588613911167383,"score_spread":0.2826339369772286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111940765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8454164,0.008903478,0.11470006,0.012630576,0.0010144709,0.00070410117,0.00038379338,0.0010282814,0.015218806],"genre_scores_gemma":[0.95247096,0.0016902724,0.040383987,0.0017360577,0.00014166905,0.00012249647,0.00022523566,0.00023020917,0.0029990552],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9838742,0.008211259,0.0021581661,0.0010869429,0.0037858107,0.00088359456],"domain_scores_gemma":[0.9485265,0.02485772,0.0075664087,0.0074076666,0.010844067,0.0007977112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.022555409,0.00068551325,0.00054967403,0.0009321199,0.0013540875,0.002841884,0.0012873098,0.0013253803,0.0021229137],"category_scores_gemma":[0.063998334,0.00041684718,0.00043427557,0.00097524124,0.003311952,0.0022157424,0.0010759307,0.0016131612,0.00056793843],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026911825,0.00035451155,0.25755164,0.0010387705,0.00020417584,0.0051025543,0.004191994,0.0028707,0.5568027,0.0061148196,0.0042933426,0.15878372],"study_design_scores_gemma":[0.000077651595,0.0022171559,0.15725581,0.000659443,0.00047768207,0.0114929415,0.0028983897,0.011149767,0.77339286,0.004943293,0.03524822,0.00018679665],"about_ca_topic_score_codex":0.0033378399,"about_ca_topic_score_gemma":0.0043654214,"teacher_disagreement_score":0.022555409,"about_ca_system_score_codex":0.0012738445,"about_ca_system_score_gemma":0.00078242895,"threshold_uncertainty_score":0.11928582},"labels":[],"label_agreement":null},{"id":"W2111990769","doi":"10.1128/jcm.38.4.1397-1403.2000","title":"A Panel of Monoclonal Antibodies Targeting the Rabies Virus Phosphoprotein Identifies a Highly Variable Epitope of Value for Sensitive Strain Discrimination","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Epitope; Monoclonal antibody; Lyssavirus; Virology; Biology; Rabies virus; Phosphoprotein; Recombinant DNA; Epitope mapping; Antibody; Molecular biology; Virus; Rhabdoviridae; Biochemistry; Immunology","score_opus":0.03982853054689447,"score_gpt":0.32745786838601143,"score_spread":0.287629337839117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111990769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9745194,0.0014266106,0.020131914,0.00012425575,0.000029553212,0.00021848698,0.0003366392,0.00017180685,0.003041492],"genre_scores_gemma":[0.9656768,0.0010969784,0.03016696,0.00018118424,0.000028645018,0.00016259817,0.0011953999,0.000024358682,0.0014671823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999694,0.00006786002,0.000025909454,0.00006602621,0.00007342416,0.000072838666],"domain_scores_gemma":[0.99967134,0.00011110058,0.00004406692,0.000046038116,0.00007393226,0.000053527427],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046298228,0.0007216075,0.00045339702,0.0007982396,0.0002354391,0.00027098611,0.00036363618,0.00044391234,0.001227522],"category_scores_gemma":[0.00045626677,0.00023312095,0.00034838298,0.00031107015,0.00020425649,0.0001589701,0.00026425952,0.00068052876,0.0003884051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046046272,0.000041105126,0.00058705756,0.000026018552,0.0000095232235,0.00002026694,0.000009482478,0.000058368983,0.9959437,0.00003987322,0.000047454956,0.0031711403],"study_design_scores_gemma":[0.00005447556,0.0014630596,0.018531889,0.000020701727,0.00009416662,0.0010406822,0.000039805753,0.0018695454,0.97278756,0.00015225729,0.003932381,0.000013335851],"about_ca_topic_score_codex":0.00058715703,"about_ca_topic_score_gemma":0.001141383,"teacher_disagreement_score":0.001227522,"about_ca_system_score_codex":0.00032587236,"about_ca_system_score_gemma":0.00016310552,"threshold_uncertainty_score":0.004106462},"labels":[],"label_agreement":null},{"id":"W2111996375","doi":"10.1128/jcm.02366-06","title":"Use of Sequence Analysis of the NS5B Region for Routine Genotyping of Hepatitis C Virus with Reference to C/E1 and 5′ Untranslated Region Sequences","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":286,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital du Sacré-Cœur de Montréal; Hôpital Maisonneuve-Rosemont; Jewish General Hospital; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal; Royal Victoria Hospital; Institut National de Santé Publique du Québec","funders":"","keywords":"NS5B; Genotype; Genotyping; Biology; Virology; Untranslated region; Phylogenetic tree; Hepatitis C virus; Genetics; Sequence analysis; Five prime untranslated region; Hepacivirus; Virus; RNA; Gene","score_opus":0.25407279366958846,"score_gpt":0.44589580199130097,"score_spread":0.1918230083217125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111996375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97107375,0.0018818909,0.01737588,0.00014023336,0.000050210754,0.00040560495,0.0029629322,0.00014389349,0.005965559],"genre_scores_gemma":[0.9273787,0.001475642,0.06313928,0.00027075273,0.000018284447,0.00022466129,0.003781655,0.000034201763,0.0036766927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941957,0.0001260537,0.00004349483,0.00011005026,0.00022885077,0.00007204729],"domain_scores_gemma":[0.9991116,0.00019273406,0.00013968792,0.00008304549,0.00040952273,0.00006348262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007766182,0.0003879903,0.0002591481,0.0014302057,0.0005219996,0.0003678097,0.0002636912,0.00029013457,0.0012714553],"category_scores_gemma":[0.0015358881,0.00018192409,0.00024234281,0.001179612,0.00032268188,0.000108118824,0.0001232477,0.00027286026,0.00055603404],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040478708,0.00008229264,0.19142535,0.00028555855,0.00006588335,0.00051629206,0.00086672395,0.00036403665,0.74265075,0.00016385507,0.000679693,0.062494814],"study_design_scores_gemma":[0.00003746655,0.00061070547,0.8669788,0.00011117107,0.000095161784,0.0024351592,0.00041119577,0.0036525137,0.11280478,0.00008439506,0.012741872,0.00003675986],"about_ca_topic_score_codex":0.14406376,"about_ca_topic_score_gemma":0.29030624,"teacher_disagreement_score":0.14406376,"about_ca_system_score_codex":0.00087081245,"about_ca_system_score_gemma":0.0014662719,"threshold_uncertainty_score":0.28645045},"labels":[],"label_agreement":null},{"id":"W2112005492","doi":"10.1128/jcm.01460-07","title":"Development of a Species-Specific <i>fur</i> Gene-Based Method for Identification of the <i>Burkholderia cepacia</i> Complex","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; University of Alberta","keywords":"Biology; Burkholderia cepacia complex; Subspecies; Genetics; Burkholderia; Gene; Sequence analysis; Locus (genetics); 16S ribosomal RNA; Species complex; Multilocus sequence typing; Polymerase chain reaction; Typing; Phylogenetics; Evolutionary biology; Phylogenetic tree; Genotype; Zoology; Bacteria","score_opus":0.1400395036540565,"score_gpt":0.45532921095873596,"score_spread":0.3152897073046794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112005492","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3900346,0.0061128684,0.59466696,0.0006556959,0.0003330866,0.001212664,0.0010131279,0.0011657394,0.004805276],"genre_scores_gemma":[0.4111973,0.0026535937,0.5821898,0.00030285039,0.00005387379,0.00043495907,0.0012012733,0.00009665917,0.0018697305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894494,0.0002798987,0.00009995813,0.0003270145,0.00023427443,0.00011396899],"domain_scores_gemma":[0.99932015,0.00017946534,0.00012551386,0.00007951015,0.00022397639,0.00007138059],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007486417,0.00076247915,0.00065740175,0.0009029579,0.00029815198,0.0005952031,0.0006376098,0.0010492731,0.0007194363],"category_scores_gemma":[0.0010244289,0.0003133857,0.00053130806,0.00033842484,0.00043537837,0.00076310174,0.0006509306,0.0009034889,0.0011168848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000032267042,0.00004942678,0.0012307271,0.0001097081,0.000008025179,0.00006739044,0.000043874723,0.00012600102,0.98158824,0.000091781934,0.00006353124,0.016588842],"study_design_scores_gemma":[0.000014726203,0.0006688225,0.008303084,0.000064547174,0.000087145294,0.0012863313,0.00017259952,0.0065822704,0.97696084,0.00018831858,0.005617569,0.000053755157],"about_ca_topic_score_codex":0.0006320791,"about_ca_topic_score_gemma":0.0007786464,"teacher_disagreement_score":0.0010492731,"about_ca_system_score_codex":0.00016661322,"about_ca_system_score_gemma":0.0005395241,"threshold_uncertainty_score":0.003959179},"labels":[],"label_agreement":null},{"id":"W2112100901","doi":"10.1128/jcm.38.11.4266-4268.2000","title":"Quantitative Gram Stain Interpretation Criteria Used by Microbiology Laboratories in Alberta, Canada","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"College of Physicians and Surgeons of Ontario; University of Calgary","funders":"","keywords":"Grading (engineering); Clinical microbiology; Gram staining; External quality assessment; Medicine; Microbiological Techniques; Microbiology; Biology; Pathology; Ecology","score_opus":0.01973128328263478,"score_gpt":0.34875442599515,"score_spread":0.3290231427125152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112100901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94967914,0.0050692935,0.007823529,0.0014348226,0.00010538728,0.0007921297,0.0023826559,0.0005264462,0.032186527],"genre_scores_gemma":[0.9756225,0.001839711,0.016967654,0.0004507817,0.000016670185,0.00013001246,0.001610014,0.00003683742,0.0033257853],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9852034,0.0022342454,0.0011855027,0.00053383986,0.009666127,0.0011768617],"domain_scores_gemma":[0.9683346,0.0044631236,0.004774778,0.00068346993,0.019878808,0.0018651816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077947835,0.00051666563,0.00029475387,0.0057088407,0.0021471586,0.0020624215,0.001784597,0.00043694876,0.0015322857],"category_scores_gemma":[0.020653693,0.0003500254,0.00028514361,0.0061568073,0.0014598436,0.00046380187,0.0011281095,0.00038105753,0.0003792569],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043820887,0.00016841548,0.86172426,0.0005401088,0.000065845794,0.0008409819,0.0049582203,0.000903443,0.021321755,0.0011067442,0.0063933767,0.101538725],"study_design_scores_gemma":[0.000043522847,0.00038862735,0.96356845,0.00032807107,0.000080386846,0.001462728,0.008152473,0.0017612338,0.008749922,0.00024116962,0.015155278,0.00006806616],"about_ca_topic_score_codex":0.7771241,"about_ca_topic_score_gemma":0.8747209,"teacher_disagreement_score":0.2228759,"about_ca_system_score_codex":0.012788376,"about_ca_system_score_gemma":0.024618814,"threshold_uncertainty_score":0.4483769},"labels":[],"label_agreement":null},{"id":"W2112812941","doi":"10.1128/jcm.44.2.632-634.2006","title":"Multilocus Genotyping of <i>Cryptosporidium</i> sp. Isolates from Human Immunodeficiency Virus-Infected Individuals in South India","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Intestinal Research","funders":"Fogarty International Center","keywords":"Genotyping; Cryptosporidium; Biology; Virology; Cryptosporidium parvum; Genotype; Diarrhea; Microbiology; Protozoa; Restriction fragment length polymorphism; Genetics; Feces; Medicine; Gene","score_opus":0.019913982627966856,"score_gpt":0.3143904084491415,"score_spread":0.29447642582117467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112812941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99962676,0.0000291831,0.00010068981,0.000013179469,0.0000016018546,0.0000057688794,0.00008509016,0.0000038606886,0.00013396371],"genre_scores_gemma":[0.99959654,0.000022250557,0.00014761655,0.000015882266,0.0000016124121,0.000002785499,0.00013401896,0.0000013148947,0.00007804898],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998016,0.00003624371,0.000017507185,0.00004849764,0.000042178257,0.00005401203],"domain_scores_gemma":[0.99968064,0.0000853905,0.00007145532,0.000029741677,0.000058490015,0.00007418714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104275765,0.00015565846,0.00013922737,0.00054693583,0.000388327,0.0004118528,0.00017842333,0.0002023759,0.00044084617],"category_scores_gemma":[0.00047414843,0.00016999198,0.00014955435,0.0003756475,0.00028181903,0.00009066742,0.00019486813,0.0002922531,0.00012456354],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017267554,0.000047416717,0.95759493,0.00004128131,0.00003312421,0.0005520182,0.0016840629,0.00009844491,0.03254813,0.000037834096,0.00016127242,0.0070287],"study_design_scores_gemma":[0.000010493216,0.00014438145,0.992591,0.0000074042428,0.000037913174,0.0018091945,0.0009414521,0.00014099194,0.0038244547,0.000014321244,0.0004705315,0.00000784684],"about_ca_topic_score_codex":0.012572682,"about_ca_topic_score_gemma":0.014127687,"teacher_disagreement_score":0.012572682,"about_ca_system_score_codex":0.0002678751,"about_ca_system_score_gemma":0.00024609274,"threshold_uncertainty_score":0.024998963},"labels":[],"label_agreement":null},{"id":"W2112944253","doi":"10.1128/jcm.39.2.762-764.2001","title":"Flagella as a Potential Marker for<i>Campylobacter jejuni</i>Strains Associated with Guillain-Barre Syndrome","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Campylobacter jejuni; Guillain-Barre syndrome; Flagellum; Campylobacter; Microbiology; Biology; Antigen; Bacteria; Virology; Immunology; Genetics","score_opus":0.024109519268447385,"score_gpt":0.32251766320511105,"score_spread":0.29840814393666365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112944253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900764,0.00044584225,0.00015203423,0.00003720174,0.000008352223,0.0000043992013,0.00004714308,0.00000533397,0.0002921888],"genre_scores_gemma":[0.9992379,0.00011945506,0.00042075338,0.00002538111,0.000009027563,0.0000028870006,0.00009650618,0.0000014854545,0.000086632164],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99976057,0.00007763875,0.000027217298,0.000032737156,0.000039435898,0.000062435014],"domain_scores_gemma":[0.9993505,0.00017831322,0.00018957882,0.000026327552,0.00013084087,0.00012450335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032878606,0.00034559093,0.00022187772,0.0013984685,0.00031745824,0.00044631155,0.00024797794,0.0004971625,0.00051624794],"category_scores_gemma":[0.0014360306,0.00016908799,0.00015011957,0.0005942938,0.00038305178,0.0002315018,0.0002842197,0.0003200422,0.00014050811],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016524899,0.00009830699,0.80691504,0.00014579507,0.000058529557,0.0033795238,0.00041597307,0.00015513027,0.17708069,0.00008214656,0.00023522133,0.009781159],"study_design_scores_gemma":[0.000043728156,0.0011812707,0.9483961,0.000058813377,0.000119201584,0.014848757,0.0009306569,0.0010099609,0.031831045,0.00009084262,0.0014666765,0.000022880547],"about_ca_topic_score_codex":0.0027154258,"about_ca_topic_score_gemma":0.0021959883,"teacher_disagreement_score":0.0027154258,"about_ca_system_score_codex":0.00020995614,"about_ca_system_score_gemma":0.00013533031,"threshold_uncertainty_score":0.005399227},"labels":[],"label_agreement":null},{"id":"W2113101607","doi":"10.1128/jcm.02555-10","title":"Treponema-Specific Tests for Serodiagnosis of Syphilis: Comparative Evaluation of Seven Assays","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Syphilis; Treponema; Serology; Rapid plasma reagin; Gold standard (test); Immunoassay; Medicine; Virology; Antibody; Immunology; Biotechnology; Biology; Internal medicine","score_opus":0.4858139836039234,"score_gpt":0.49181321378840975,"score_spread":0.005999230184486337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113101607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97266215,0.016874276,0.006801604,0.00010713331,0.00017565346,0.00030938032,0.00039577248,0.0001228128,0.0025510904],"genre_scores_gemma":[0.9896298,0.0021749812,0.006871363,0.00007750125,0.000056848618,0.00013190902,0.00077269925,0.000032195127,0.00025266837],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.97070044,0.012372775,0.0026409768,0.002383811,0.01092453,0.0009774305],"domain_scores_gemma":[0.96969986,0.018108621,0.0027805315,0.0018628553,0.0063428287,0.0012052616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.027238244,0.0018681731,0.0019280894,0.0039158873,0.0003793155,0.0018241926,0.0013257634,0.001259936,0.00057543186],"category_scores_gemma":[0.020635607,0.0005120673,0.0016610468,0.0018736905,0.0009942201,0.0016996517,0.0013829073,0.0010572714,0.00037637335],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.050166402,0.003666732,0.6186074,0.0027512189,0.0057581407,0.00029618625,0.0017897767,0.0056123976,0.049700204,0.0011738975,0.00097220717,0.25950542],"study_design_scores_gemma":[0.001300453,0.069538005,0.8022989,0.00049286487,0.00590162,0.0031044027,0.0009868203,0.033741605,0.07420952,0.0010699286,0.007073894,0.0002819893],"about_ca_topic_score_codex":0.00050128106,"about_ca_topic_score_gemma":0.0007457354,"teacher_disagreement_score":0.027238244,"about_ca_system_score_codex":0.0008330509,"about_ca_system_score_gemma":0.00070732506,"threshold_uncertainty_score":0.14405137},"labels":[],"label_agreement":null},{"id":"W2113110047","doi":"10.1128/jcm.00878-08","title":"Comparison of the Luminex xTAG Respiratory Viral Panel with In-House Nucleic Acid Amplification Tests for Diagnosis of Respiratory Virus Infections","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Provincial Laboratory of Public Health","funders":"","keywords":"Virology; Nucleic Acid Amplification Tests; Multiplex; Virus; Viral load; Outbreak; Respiratory system; Biology; Nat; Nucleic acid test; Typing; Medicine; Microbiology; Coronavirus disease 2019 (COVID-19); Disease; Infectious disease (medical specialty); Bioinformatics; Internal medicine","score_opus":0.2722502325068602,"score_gpt":0.48237571187457895,"score_spread":0.21012547936771875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113110047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757023,0.0029068545,0.016226405,0.00015818173,0.00010939795,0.00016168,0.0007622128,0.0003147785,0.0036581592],"genre_scores_gemma":[0.9759346,0.00074496324,0.019726736,0.0001999621,0.000051955012,0.000109727465,0.001829769,0.000033714143,0.0013684785],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9881337,0.005276543,0.00054083887,0.0013523874,0.0041333456,0.00056321354],"domain_scores_gemma":[0.994341,0.0029208695,0.0006815481,0.00046871405,0.001367951,0.00021976003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00825026,0.00077073043,0.0006692296,0.0012073001,0.00023013822,0.0012494505,0.0010913693,0.00069552334,0.00072998524],"category_scores_gemma":[0.008793685,0.00044400222,0.00044214053,0.00091970264,0.00028275966,0.00080516277,0.0006948056,0.00069021445,0.00050920603],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005556823,0.00092371146,0.7266365,0.0004914877,0.00081239216,0.0003138538,0.000999645,0.006797074,0.11037722,0.00032176147,0.0023882259,0.14438139],"study_design_scores_gemma":[0.00021270894,0.0058005056,0.84901255,0.000085125,0.00059895404,0.002384003,0.00039295017,0.040890593,0.094460435,0.00016592698,0.0059104725,0.00008577874],"about_ca_topic_score_codex":0.008501491,"about_ca_topic_score_gemma":0.011778665,"teacher_disagreement_score":0.008501491,"about_ca_system_score_codex":0.0012144546,"about_ca_system_score_gemma":0.00066072226,"threshold_uncertainty_score":0.04363209},"labels":[],"label_agreement":null},{"id":"W2113151405","doi":"10.1128/jcm.42.12.5681-5688.2004","title":"Genetic Analysis of Diverse Disease-Causing Pneumococci Indicates High Levels of Diversity within Serotypes and Capsule Switching","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"Multilocus sequence typing; Serotype; Biology; Genotype; Phylogenetic tree; Typing; Genetic diversity; Disease; Virology; Microbiology; Streptococcus pneumoniae; Genetics; Gene; Bacteria; Population; Medicine; Pathology","score_opus":0.07046795982783136,"score_gpt":0.35794869748338365,"score_spread":0.28748073765555227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113151405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990677,0.00016068848,0.0004032181,0.000021082082,0.0000014240228,0.000004885688,0.00012501571,0.000002745127,0.00021333205],"genre_scores_gemma":[0.9988393,0.00010995008,0.00073983707,0.000015795868,0.000004494701,0.0000027110768,0.00019479594,0.0000014516608,0.00009168065],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994234,0.000098720695,0.00004526647,0.00008493626,0.00021748597,0.00013033344],"domain_scores_gemma":[0.9991574,0.00018930083,0.000328065,0.000041229152,0.00015878082,0.00012523826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042157632,0.00021237523,0.0003171805,0.0012760097,0.0003270569,0.0006028532,0.00013121421,0.00021243579,0.00035072037],"category_scores_gemma":[0.0015397356,0.00010871161,0.00021935419,0.001313471,0.00040334175,0.00023069714,0.00039805044,0.0002182021,0.00009673599],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003405555,0.000083724495,0.6482519,0.0001161288,0.00007697666,0.0006125642,0.0017722893,0.00040454656,0.32610554,0.00022801352,0.00008566599,0.021922177],"study_design_scores_gemma":[0.00000778519,0.0006357803,0.9859389,0.0000092796445,0.000028987899,0.00103781,0.00043693892,0.00036354794,0.0106059825,0.000097058284,0.000827264,0.0000105562285],"about_ca_topic_score_codex":0.007781386,"about_ca_topic_score_gemma":0.010013373,"teacher_disagreement_score":0.007781386,"about_ca_system_score_codex":0.0003122069,"about_ca_system_score_gemma":0.00024044586,"threshold_uncertainty_score":0.015472174},"labels":[],"label_agreement":null},{"id":"W2113251109","doi":"10.1128/jcm.00498-08","title":"Evaluation of a New Hepatitis B Virus Surface Antigen Rapid Test with Improved Sensitivity","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; University of Cambridge; National Heart, Lung, and Blood Institute; University of Manitoba","keywords":"HBsAg; Seroconversion; Medicine; Immunoassay; Titer; Virology; Hepatitis B virus; Gold standard (test); Immunology; Virus; Internal medicine; Antibody","score_opus":0.11104425103161858,"score_gpt":0.3878999653735037,"score_spread":0.2768557143418851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113251109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95826,0.005338292,0.031489715,0.00048273857,0.000429969,0.0004683305,0.0003739016,0.00045565827,0.0027014297],"genre_scores_gemma":[0.9186242,0.0015099118,0.07576863,0.00058754854,0.0002756018,0.0002738399,0.0009246545,0.000048486443,0.001987079],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99243975,0.0027668816,0.00044104786,0.00084913406,0.0032982514,0.00020481955],"domain_scores_gemma":[0.9943878,0.0030957672,0.00047187216,0.0002625037,0.001483997,0.00029797864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008606474,0.00082647527,0.0011538573,0.0015910941,0.00016653651,0.0008641087,0.00068359653,0.0011531415,0.0008635757],"category_scores_gemma":[0.008616607,0.00038306328,0.0005852858,0.00072897447,0.0005815829,0.00093958975,0.00051041355,0.0008095707,0.00032767802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0072503146,0.0015620964,0.11734476,0.0010783462,0.00057941145,0.0007996114,0.0004371361,0.0042343396,0.6515593,0.00053518184,0.0012362205,0.21338332],"study_design_scores_gemma":[0.0016117913,0.055485923,0.2583791,0.00012248429,0.0014628829,0.010557435,0.00018739888,0.06343401,0.58638,0.00030268898,0.021791566,0.00028463404],"about_ca_topic_score_codex":0.0006874632,"about_ca_topic_score_gemma":0.0011171646,"teacher_disagreement_score":0.008606474,"about_ca_system_score_codex":0.00055242155,"about_ca_system_score_gemma":0.00047487533,"threshold_uncertainty_score":0.045515954},"labels":[],"label_agreement":null},{"id":"W2113893605","doi":"10.1128/jcm.40.7.2357-2362.2002","title":"Comparison of an Industry-Derived LCx <i>Chlamydia pneumoniae</i> PCR Research Kit to In-House Assays Performed in Five Laboratories","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia; Polymerase chain reaction; Chlamydiales; Roche Diagnostics; Biology; Chlamydiaceae; Reproducibility; Virology; Molecular biology; Medicine; Internal medicine; Immunology; Chromatography; Chemistry; Gene; Genetics","score_opus":0.1958832908353296,"score_gpt":0.49325197464183446,"score_spread":0.29736868380650483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113893605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9717429,0.0008412271,0.024308413,0.00013584812,0.00017389627,0.00028417786,0.00032907852,0.00034441348,0.0018399998],"genre_scores_gemma":[0.95737547,0.00032554872,0.039698362,0.00017141539,0.00006258247,0.00021071307,0.0012947525,0.000069877344,0.0007913233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9649729,0.018661307,0.0025709462,0.005550893,0.007221466,0.0010225708],"domain_scores_gemma":[0.9620771,0.019744948,0.0042249816,0.0041653737,0.009018973,0.0007686137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015742872,0.0011187664,0.000738056,0.0015467288,0.0005104,0.0011044635,0.0010419542,0.0012666597,0.00067281566],"category_scores_gemma":[0.032438323,0.0009946807,0.00064266653,0.0010815168,0.0011688665,0.0005826506,0.00094081566,0.00065071485,0.0005854702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00675502,0.0021538443,0.34836066,0.0018394269,0.0013315047,0.00040373646,0.0040508793,0.0039962362,0.5080815,0.0007057174,0.0016562945,0.1206652],"study_design_scores_gemma":[0.0004066775,0.017577333,0.36877117,0.00016470745,0.0013413532,0.0026321344,0.0012923925,0.016524041,0.5838221,0.00032917608,0.0069690966,0.00016984186],"about_ca_topic_score_codex":0.0014856502,"about_ca_topic_score_gemma":0.002502681,"teacher_disagreement_score":0.015742872,"about_ca_system_score_codex":0.0010742126,"about_ca_system_score_gemma":0.00054129085,"threshold_uncertainty_score":0.08325726},"labels":[],"label_agreement":null},{"id":"W2114004043","doi":"10.1128/jcm.00599-11","title":"Evaluation and Verification of the Seeplex Diarrhea-V ACE Assay for Simultaneous Detection of Adenovirus, Rotavirus, and Norovirus Genogroups I and II in Clinical Stool Specimens","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Mount Sinai Hospital; Public Health Agency of Canada","funders":"","keywords":"Norovirus; Rotavirus; Astrovirus; Virology; Multiplex; Diarrhea; Sapovirus; Biology; Multiplex polymerase chain reaction; Microbiology; Real-time polymerase chain reaction; Reoviridae; Virus; Polymerase chain reaction; Medicine; Gene; Gastroenterology","score_opus":0.12697588754205866,"score_gpt":0.42208694296765764,"score_spread":0.295111055425599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114004043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98611844,0.00088463083,0.011166013,0.000039321705,0.000031272717,0.000065645174,0.00032035905,0.0000917978,0.0012824693],"genre_scores_gemma":[0.9782633,0.00046604272,0.019900331,0.00007810543,0.000021508575,0.000052159205,0.000713058,0.000021571741,0.00048400406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979175,0.0005425802,0.0002461479,0.00041691386,0.00075022166,0.0001267445],"domain_scores_gemma":[0.99663925,0.0016114388,0.0006852365,0.00023521221,0.00068465114,0.00014411895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016136704,0.00060078455,0.00043740173,0.0010912352,0.00018531302,0.0005291215,0.00038290484,0.00045405247,0.0005996916],"category_scores_gemma":[0.004349542,0.00030166714,0.0002532841,0.00047178264,0.00038314125,0.00032158766,0.0002781617,0.00030304215,0.0004454328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006710427,0.00016859178,0.47382838,0.00020921254,0.00008128759,0.0010115647,0.00039303518,0.00037806298,0.49866858,0.00012573307,0.00025607407,0.024208518],"study_design_scores_gemma":[0.000060013463,0.002141085,0.44780675,0.00008766542,0.00020516981,0.018369142,0.0005179168,0.010255384,0.5151674,0.00012341615,0.0052209436,0.0000450254],"about_ca_topic_score_codex":0.0006156165,"about_ca_topic_score_gemma":0.0010081485,"teacher_disagreement_score":0.0016136704,"about_ca_system_score_codex":0.0001920432,"about_ca_system_score_gemma":0.00023562642,"threshold_uncertainty_score":0.008534014},"labels":[],"label_agreement":null},{"id":"W2114031679","doi":"10.1128/jcm.00100-07","title":"<i>Chlamydia trachomatis</i> Load at Matched Anatomic Sites: Implications for Screening Strategies","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Food and Drug Administration; University of Manitoba; University of Cambridge; Wellcome Trust","keywords":"Chlamydia trachomatis; Urine; Genitourinary system; Chlamydia; Ligase chain reaction; Chlamydiales; Medicine; Urethra; Internal medicine; Biology; Gynecology; Immunology; Urology; Polymerase chain reaction; Multiplex polymerase chain reaction","score_opus":0.09377114564798154,"score_gpt":0.4398055391692212,"score_spread":0.34603439352123966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114031679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96969765,0.017054783,0.0029658724,0.004825067,0.000089852205,0.00007626625,0.00033543358,0.00008499834,0.0048700436],"genre_scores_gemma":[0.9960829,0.0016918272,0.0014057062,0.0004536712,0.000094976014,0.000022556414,0.00009078254,0.00000521508,0.00015229902],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988477,0.00067728036,0.00006542823,0.00013649501,0.00016433459,0.00010879406],"domain_scores_gemma":[0.9966343,0.002080984,0.00067559653,0.00008387092,0.00022061459,0.00030474353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028246497,0.00043630486,0.00063661364,0.00079189707,0.0003155846,0.0012900401,0.0005327526,0.00062328525,0.0011657525],"category_scores_gemma":[0.0075576454,0.0001928344,0.00022646545,0.00058108196,0.000732548,0.00094268116,0.00046596487,0.00041750263,0.000248025],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000427687,0.0001083503,0.9278448,0.00019142382,0.000056095723,0.00025271898,0.00016501229,0.00041897123,0.0014536886,0.00019248523,0.0008232671,0.068065435],"study_design_scores_gemma":[0.000016558452,0.00097498106,0.9909108,0.00023737726,0.00010950842,0.0010049493,0.001109989,0.0031387513,0.00070811546,0.00053832686,0.0012300092,0.00002057514],"about_ca_topic_score_codex":0.0037660867,"about_ca_topic_score_gemma":0.0029892598,"teacher_disagreement_score":0.0037660867,"about_ca_system_score_codex":0.0005249112,"about_ca_system_score_gemma":0.0005735754,"threshold_uncertainty_score":0.0149383545},"labels":[],"label_agreement":null},{"id":"W2114072894","doi":"10.1128/jcm.42.8.3731-3733.2004","title":"Evaluation of the QuickLab RSV Test, a New Rapid Lateral-Flow Immunoassay for Detection of Respiratory Syncytial Virus Antigen","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Gold standard (test); Immunoassay; Positive predicative value; Virus; Virology; Medicine; Respiratory system; Screening test; Antigen; Antibody; Immunology; Predictive value; Internal medicine","score_opus":0.144818471481796,"score_gpt":0.4584568420270029,"score_spread":0.3136383705452069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114072894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857351,0.004212725,0.006878751,0.00011334059,0.000081927945,0.00018113761,0.00032658986,0.000091260044,0.0023792319],"genre_scores_gemma":[0.9890456,0.00063369964,0.008730797,0.00018126388,0.000045645087,0.000053236676,0.0003866214,0.00001550943,0.00090763805],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99786925,0.0008395598,0.00009775155,0.000260976,0.0008105948,0.0001218235],"domain_scores_gemma":[0.9973158,0.0014433932,0.0003245243,0.00011564099,0.00062462554,0.00017596928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033571098,0.0006022186,0.0005535724,0.0007817172,0.0001666531,0.000508157,0.00031212324,0.00042649097,0.0009192081],"category_scores_gemma":[0.004818907,0.00019558663,0.0004269789,0.00022863831,0.00047229565,0.0005710054,0.000267028,0.00040041062,0.00028397946],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0053600958,0.00096572866,0.67048705,0.00040399074,0.0003468471,0.0009403193,0.00042071953,0.001927546,0.1266998,0.0003264836,0.0015514751,0.19056997],"study_design_scores_gemma":[0.00075870415,0.040230352,0.6759994,0.00017317153,0.0007306232,0.0114551075,0.00034926244,0.028884042,0.22476874,0.00049986586,0.015963709,0.00018694508],"about_ca_topic_score_codex":0.0015404534,"about_ca_topic_score_gemma":0.0022273066,"teacher_disagreement_score":0.0033571098,"about_ca_system_score_codex":0.0005378741,"about_ca_system_score_gemma":0.00037344464,"threshold_uncertainty_score":0.017754316},"labels":[],"label_agreement":null},{"id":"W2114151069","doi":"10.1128/jcm.41.1.237-241.2003","title":"Detection and Differentiation of <i>Entamoeba histolytica</i> and <i>Entamoeba dispar</i> Isolates in Clinical Samples by PCR and Enzyme-Linked Immunosorbent Assay","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Amoebic Infections and Treatments","field":"Medicine","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"London School of Hygiene and Tropical Medicine","keywords":"Dispar; Entamoeba histolytica; Biology; Context (archaeology); Microbiology; Polymerase chain reaction; Entamoeba; Virology; Gene; Genetics","score_opus":0.027386023191200995,"score_gpt":0.3270288591462209,"score_spread":0.2996428359550199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114151069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950335,0.0009908511,0.0030840735,0.000036813668,0.00001256336,0.00008488023,0.00011005468,0.000014651164,0.00063256646],"genre_scores_gemma":[0.9875201,0.0009047429,0.010882852,0.000055721226,0.000019747271,0.000088484754,0.00034053292,0.0000055080745,0.00018240655],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851114,0.00042583206,0.00032233834,0.00034529195,0.00025920506,0.0001360875],"domain_scores_gemma":[0.9984268,0.00064975116,0.00045338427,0.000089069494,0.00030354105,0.000077491044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012093413,0.00034243296,0.0004708446,0.0008476006,0.00019846104,0.00068387965,0.00027873457,0.00041555637,0.0003519707],"category_scores_gemma":[0.0028781374,0.00025889548,0.00028004806,0.0004863808,0.00044622814,0.00041956728,0.00030667373,0.00026783906,0.00020565218],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010757049,0.00041300667,0.5013366,0.0008031365,0.00008376228,0.00086520385,0.0014828767,0.00032578097,0.4618049,0.00014865318,0.00014424128,0.03151612],"study_design_scores_gemma":[0.00007807092,0.004656745,0.69450915,0.00020544366,0.0003365913,0.012306616,0.004281473,0.003184753,0.2766335,0.00021776502,0.0035320448,0.000057771027],"about_ca_topic_score_codex":0.0006674395,"about_ca_topic_score_gemma":0.0004745936,"teacher_disagreement_score":0.0012093413,"about_ca_system_score_codex":0.00017367076,"about_ca_system_score_gemma":0.0002356246,"threshold_uncertainty_score":0.0063956976},"labels":[],"label_agreement":null},{"id":"W2114152855","doi":"10.1128/jcm.01612-13","title":"<i>In Vitro</i> Activity of Amikacin against Isolates of Mycobacterium avium Complex with Proposed MIC Breakpoints and Finding of a 16S rRNA Gene Mutation in Treated Isolates","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Amikacin; Broth microdilution; Microbiology; Biology; 16S ribosomal RNA; Minimum inhibitory concentration; Antibiotics; Bacteria; Genetics","score_opus":0.03524955790395376,"score_gpt":0.3389131468780998,"score_spread":0.303663588974146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114152855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98980486,0.0034038217,0.0023479112,0.0003412573,0.00011029797,0.0001011875,0.001339214,0.00013404297,0.0024174664],"genre_scores_gemma":[0.9934587,0.00082845986,0.0030137636,0.00020782507,0.00006195054,0.00004321785,0.001850057,0.000019905508,0.0005162306],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986237,0.00040084173,0.0003471761,0.00018693788,0.0003167049,0.0001246848],"domain_scores_gemma":[0.9985103,0.00053059275,0.0003277981,0.00016100565,0.0003639828,0.0001062797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064798654,0.0004126142,0.00052715524,0.0006183403,0.00019377348,0.0007354852,0.0005657796,0.00065009034,0.0017140467],"category_scores_gemma":[0.0022628447,0.00020425863,0.0006796903,0.0005414472,0.00027959212,0.0003020908,0.0002416103,0.00051962055,0.0005009173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022892035,0.0005925588,0.11137464,0.00061055087,0.00018863958,0.0012792771,0.0003089078,0.0012726854,0.86588514,0.00015621152,0.0014185177,0.014623591],"study_design_scores_gemma":[0.00007412341,0.005487255,0.20412639,0.00010767996,0.00016767683,0.0055724704,0.000386933,0.0023524123,0.77690315,0.00010740521,0.004662076,0.00005255621],"about_ca_topic_score_codex":0.0021955005,"about_ca_topic_score_gemma":0.001615445,"teacher_disagreement_score":0.0021955005,"about_ca_system_score_codex":0.00045710063,"about_ca_system_score_gemma":0.00022435476,"threshold_uncertainty_score":0.005734086},"labels":[],"label_agreement":null},{"id":"W2114702971","doi":"10.1128/jcm.00381-10","title":"Detection of<i>Campylobacter jejuni</i>by Culture and Real-Time PCR in a French Cohort of Patients with Guillain-Barre Syndrome","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Campylobacter jejuni; Guillain-Barre syndrome; Cohort; Medicine; Virology; Cohort study; Campylobacter; Microbiology; Biology; Pediatrics; Bacteria; Internal medicine; Genetics","score_opus":0.005882890940244737,"score_gpt":0.26195764574295316,"score_spread":0.2560747548027084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114702971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99944395,0.00016982475,0.0000880306,0.000026655047,0.0000033130393,0.0000041352923,0.00008560737,0.000003674727,0.00017482832],"genre_scores_gemma":[0.9993962,0.00011645454,0.00014223652,0.00004456313,0.000008909838,0.000008125183,0.00017427282,0.0000026092976,0.00010645213],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995938,0.000072545685,0.000028622671,0.000109458124,0.00007921581,0.00011635588],"domain_scores_gemma":[0.99945563,0.00015068187,0.00013409696,0.00003562193,0.00011528141,0.000108641645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004580875,0.0004921284,0.00037899558,0.0009560484,0.0006219664,0.00085979106,0.00028202063,0.00050828344,0.0010969824],"category_scores_gemma":[0.0011966018,0.0003067451,0.00043068844,0.00044962825,0.0005721693,0.00023782295,0.00023891247,0.00030370505,0.0002505859],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026473438,0.00003815552,0.9893884,0.000014850047,0.00004281182,0.00071010453,0.00028916492,0.00005619586,0.006988571,0.000019801844,0.0001239231,0.0020631845],"study_design_scores_gemma":[0.000029917712,0.0005114665,0.9899865,0.000011772,0.00007926948,0.0051801964,0.0006553737,0.0002639364,0.0025630665,0.00002389729,0.00068056694,0.000014100006],"about_ca_topic_score_codex":0.019247787,"about_ca_topic_score_gemma":0.00931799,"teacher_disagreement_score":0.019247787,"about_ca_system_score_codex":0.00070989266,"about_ca_system_score_gemma":0.0003974235,"threshold_uncertainty_score":0.038271546},"labels":[],"label_agreement":null},{"id":"W2114764103","doi":"10.1128/jcm.42.5.1875-1884.2004","title":"New Real-Time PCR Assay for Rapid Detection of Methicillin- Resistant<i>Staphylococcus aureus</i>Directly from Specimens Containing a Mixture of Staphylococci","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":410,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"SCCmec; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Staphylococcal infections; Meticillin; Micrococcaceae; Coagulase; Multiplex; Biology; Staphylococcus; Polymerase chain reaction; cons; Multiplex polymerase chain reaction; Antibacterial agent; Gene; Antibiotics; Bacteria; Genetics","score_opus":0.03486187420282111,"score_gpt":0.33971491094391065,"score_spread":0.30485303674108954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114764103","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1953324,0.006988378,0.7843725,0.00053551333,0.0012127731,0.0013775442,0.0013514465,0.0049118157,0.003917681],"genre_scores_gemma":[0.15959764,0.002629506,0.82374936,0.0006465401,0.00030966074,0.0021867042,0.0035692486,0.00017921336,0.007132141],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99520135,0.0012325138,0.000361086,0.0016573514,0.0012269608,0.0003206482],"domain_scores_gemma":[0.998064,0.0008367077,0.00037742796,0.00015125373,0.00036999554,0.0002006714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022952426,0.002189816,0.0015454325,0.0017823152,0.00032550472,0.0010067626,0.0016004683,0.0016675172,0.0020160165],"category_scores_gemma":[0.002349213,0.0011068818,0.0012001289,0.0007266561,0.0008946924,0.0012620613,0.00075366296,0.002213638,0.0016299736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026888298,0.00023335885,0.0017794865,0.00030690475,0.000039966075,0.00015864534,0.00015345759,0.00028756863,0.97431004,0.00040198027,0.00066286593,0.02139685],"study_design_scores_gemma":[0.00018029753,0.0023013118,0.0071816035,0.00013835523,0.00022282828,0.003121878,0.00013884828,0.022228686,0.94094366,0.00039730538,0.022974065,0.00017114238],"about_ca_topic_score_codex":0.00023126575,"about_ca_topic_score_gemma":0.00050667697,"teacher_disagreement_score":0.0022952426,"about_ca_system_score_codex":0.0005731603,"about_ca_system_score_gemma":0.00066191633,"threshold_uncertainty_score":0.0121385455},"labels":[],"label_agreement":null},{"id":"W2114883020","doi":"10.1128/jcm.00793-10","title":"Spectrum of Clinically Relevant <i>Acremonium</i> Species in the United States","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Acremonium; Biology; Hypocreales; Incertae sedis; Polyphyly; Genus; Microbiology; Ribosomal RNA; Zoology; Genetics; Phylogenetics; Gene; Botany; Ascomycota","score_opus":0.022429190551646216,"score_gpt":0.314026778323572,"score_spread":0.2915975877719258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114883020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953825,0.0007135011,0.00014013653,0.00022548907,0.000011322024,0.000021368318,0.00054613233,0.000013129746,0.0029464457],"genre_scores_gemma":[0.99887365,0.0003341813,0.000131018,0.00014975916,0.0000052804075,0.0000049863384,0.00029198139,0.000001847722,0.00020733035],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99980825,0.00004490567,0.000023789595,0.00003703452,0.0000417745,0.000044290457],"domain_scores_gemma":[0.9996177,0.00005050485,0.00013628183,0.000010177007,0.00009322472,0.000092102346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018623802,0.00014802127,0.000119376746,0.0005556788,0.00032944343,0.0003525529,0.0001629785,0.00016804821,0.0016472639],"category_scores_gemma":[0.0006018069,0.00010194985,0.00007525919,0.000452312,0.00021726727,0.00019670991,0.0003383626,0.00018537928,0.00019574599],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001367569,0.000094444506,0.98124194,0.000048097336,0.000019446652,0.0010125992,0.00034264152,0.000085474,0.004489429,0.000100117344,0.0012691583,0.011159948],"study_design_scores_gemma":[0.0000064305127,0.00013153642,0.9941247,0.000043211614,0.000013674617,0.0020429015,0.0009547769,0.00017067086,0.0008168166,0.00004445525,0.0016456454,0.0000051399966],"about_ca_topic_score_codex":0.01717069,"about_ca_topic_score_gemma":0.03162165,"teacher_disagreement_score":0.01717069,"about_ca_system_score_codex":0.0003246348,"about_ca_system_score_gemma":0.00038207113,"threshold_uncertainty_score":0.03414148},"labels":[],"label_agreement":null},{"id":"W2115026506","doi":"10.1128/jcm.02265-08","title":"Using a Commercial DiversiLab Semiautomated Repetitive Sequence-Based PCR Typing Technique for Identification of <i>Escherichia coli</i> Clone ST131 Producing CTX-M-15","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Calgary Laboratory Services; University of Calgary","funders":"","keywords":"clone (Java method); Typing; Multilocus sequence typing; Escherichia coli; Biology; Polymerase chain reaction; Microbiology; Genotype; Genetics; Gene","score_opus":0.06020860028731427,"score_gpt":0.37352868671455214,"score_spread":0.31332008642723785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115026506","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9858477,0.00023895116,0.012906502,0.00003114884,0.00001080344,0.00023785686,0.00015510563,0.000058270274,0.00051359134],"genre_scores_gemma":[0.9172132,0.0005459483,0.07868902,0.000167513,0.000017907254,0.00041248318,0.0018641743,0.000040695995,0.0010490412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804425,0.00047861953,0.00014656944,0.00060064404,0.0005710852,0.00015885975],"domain_scores_gemma":[0.99891245,0.00043301564,0.00020173714,0.00015589497,0.00023007902,0.00006692017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010273067,0.00044477705,0.0004939017,0.00047852367,0.00022170666,0.0003773461,0.0003706144,0.00051407283,0.0007746554],"category_scores_gemma":[0.0018576486,0.00027301014,0.00027949963,0.00051491515,0.00042674126,0.0002906908,0.00036351953,0.00035500736,0.00037977248],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042545656,0.00031648093,0.0134669915,0.000114909984,0.000028792389,0.000076018616,0.000094695155,0.00011105489,0.97448945,0.00003350088,0.00003931514,0.010803404],"study_design_scores_gemma":[0.00011311953,0.007034742,0.056101304,0.000021475087,0.00015546878,0.0027859956,0.00014400811,0.0016281268,0.9298192,0.000065130225,0.002088394,0.00004287416],"about_ca_topic_score_codex":0.00091578654,"about_ca_topic_score_gemma":0.0013130546,"teacher_disagreement_score":0.0010273067,"about_ca_system_score_codex":0.00020630009,"about_ca_system_score_gemma":0.00033621848,"threshold_uncertainty_score":0.0054329634},"labels":[],"label_agreement":null},{"id":"W2115046531","doi":"10.1128/jcm.01732-10","title":"The I222V Neuraminidase Mutation Has a Compensatory Role in Replication of an Oseltamivir-Resistant Influenza Virus A/H3N2 E119V Mutant","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Metropolitan University; Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Neuraminidase; Oseltamivir; Mutant; Virology; Biology; Mutation; Neuraminidase inhibitor; Viral replication; Influenza A virus; Virus; Hemagglutinin (influenza); Microbiology; Genetics; Coronavirus disease 2019 (COVID-19); Gene; Medicine","score_opus":0.11093380710079875,"score_gpt":0.4539055035789767,"score_spread":0.34297169647817793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115046531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991875,0.00007268182,0.00022435901,0.000023083181,0.000012273563,0.000007468342,0.00009029789,0.000013103436,0.00036907036],"genre_scores_gemma":[0.9992138,0.000040090414,0.0003014315,0.000014917367,0.000004928486,0.000005344257,0.00014918968,0.000008857021,0.00026144605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997663,0.000052390715,0.00003677155,0.000029144812,0.00006475593,0.00005062598],"domain_scores_gemma":[0.99981683,0.000036582114,0.000036953268,0.000027958746,0.000020422096,0.00006134419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017438547,0.0004642303,0.00028503,0.00018421511,0.00022483915,0.00036723405,0.00025308036,0.00043394286,0.0011294516],"category_scores_gemma":[0.00039884448,0.00017546494,0.00048653476,0.00014349735,0.00023964206,0.00015745654,0.000214676,0.0004760895,0.0005613982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025659564,0.00006135609,0.0012639592,0.000013924922,0.000016893564,0.00055372197,0.000027279853,0.00016685043,0.99640274,0.00010719893,0.00004069496,0.0010888692],"study_design_scores_gemma":[0.00013088943,0.0014304683,0.019757083,0.000017021528,0.00007171349,0.006018104,0.0001340123,0.0042786957,0.9665405,0.000113028684,0.0014803348,0.00002814542],"about_ca_topic_score_codex":0.001427105,"about_ca_topic_score_gemma":0.0008972525,"teacher_disagreement_score":0.001427105,"about_ca_system_score_codex":0.0002908527,"about_ca_system_score_gemma":0.00021531187,"threshold_uncertainty_score":0.003778398},"labels":[],"label_agreement":null},{"id":"W2115152518","doi":"10.1128/jcm.44.2.612-613.2006","title":"False-Positive Amplified Mycobacterium Tuberculosis Direct Test Results for Samples Containing <i>Mycobacterium leprae</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; Ministry of Health and Long Term Care","funders":"","keywords":"Mycobacterium tuberculosis; Mycobacterium leprae; Tuberculosis; Mycobacterium tuberculosis complex; Nucleic Acid Amplification Tests; Leprosy; Microbiology; Mycobacterium; Biology; Medicine; Virology; Immunology; Pathology","score_opus":0.04953211312834283,"score_gpt":0.36202265782308773,"score_spread":0.3124905446947449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115152518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8851133,0.021684209,0.05827926,0.0036533088,0.004969445,0.0002660184,0.001023095,0.001597725,0.023413587],"genre_scores_gemma":[0.96880215,0.0021868162,0.022455635,0.0028951177,0.00026580042,0.000050917006,0.0003827789,0.000095092204,0.0028658141],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99285334,0.0019027281,0.00089803245,0.000576022,0.003227441,0.0005424378],"domain_scores_gemma":[0.9823475,0.010265436,0.0035636602,0.0012253162,0.0020630518,0.0005351486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004725184,0.0010574491,0.0007940128,0.0018446136,0.00062819757,0.0013891706,0.0009591199,0.0019822188,0.0022960084],"category_scores_gemma":[0.024050571,0.00045037738,0.00083426904,0.00069805904,0.0015735398,0.0007663578,0.0005210544,0.0014148221,0.0015444556],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005144566,0.00060211634,0.55683404,0.0035170724,0.00052560057,0.07525357,0.0027189264,0.0008401081,0.23765711,0.0025019455,0.013356944,0.10104806],"study_design_scores_gemma":[0.00014605618,0.0020854033,0.15051608,0.00084218744,0.0010812767,0.2846577,0.0010118131,0.00611388,0.5143795,0.0020612474,0.036950488,0.00015437395],"about_ca_topic_score_codex":0.0012248555,"about_ca_topic_score_gemma":0.002167301,"teacher_disagreement_score":0.004725184,"about_ca_system_score_codex":0.00068699394,"about_ca_system_score_gemma":0.0004274187,"threshold_uncertainty_score":0.024989486},"labels":[],"label_agreement":null},{"id":"W2115157675","doi":"10.1128/jcm.00137-07","title":"Enterohepatic <i>Helicobacter</i> Species Are Prevalent in Mice from Commercial and Academic Institutions in Asia, Europe, and North America","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":105,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; National Institute of Environmental Health Sciences; National Cancer Institute; National Institutes of Health","keywords":"Helicobacter; Helicobacter pylori; Biology; Microbiology; 16S ribosomal RNA; Virology; Bacteria; Genetics","score_opus":0.07518466369799463,"score_gpt":0.3568112947123521,"score_spread":0.2816266310143575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115157675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982508,0.00033707637,0.00013152113,0.00004366011,0.0000033682154,0.000015042725,0.0004360456,0.000020135669,0.00076238933],"genre_scores_gemma":[0.9961557,0.00046168762,0.0008613336,0.00013066272,0.00001041843,0.000023377059,0.0014170976,0.000017219698,0.0009224529],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99943966,0.000060513015,0.000073009476,0.00012978485,0.00015650265,0.0001403958],"domain_scores_gemma":[0.99858874,0.00007685413,0.0007510736,0.00007350641,0.00016870936,0.00034115382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039028694,0.00030776448,0.0003034611,0.0016078876,0.00034826246,0.0005180434,0.00027441856,0.00024967061,0.0017275632],"category_scores_gemma":[0.00036788246,0.00023394234,0.0001602155,0.0009905065,0.0003517951,0.0003352421,0.0005135845,0.00028972686,0.00053106126],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013830243,0.00034247516,0.3597536,0.00013323767,0.00009217669,0.00077395403,0.00035859848,0.000027006705,0.6298783,0.00010233178,0.00063424953,0.006521095],"study_design_scores_gemma":[0.000022430397,0.0005670763,0.96549505,0.000026315634,0.000050661285,0.001769825,0.00048217736,0.000055189324,0.029688606,0.00003465471,0.0017976803,0.000010303738],"about_ca_topic_score_codex":0.0013339072,"about_ca_topic_score_gemma":0.0027071713,"teacher_disagreement_score":0.0017275632,"about_ca_system_score_codex":0.0003105063,"about_ca_system_score_gemma":0.0002476795,"threshold_uncertainty_score":0.0057792068},"labels":[],"label_agreement":null},{"id":"W2115174145","doi":"10.1128/jcm.00365-07","title":"High-Resolution Genetic Fingerprinting of European Strains of <i>Anaplasma phagocytophilum</i> by Use of Multilocus Variable-Number Tandem-Repeat Analysis","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Biology; Anaplasma phagocytophilum; Genetics; Variable number tandem repeat; Tandem repeat; Multilocus sequence typing; Typing; Multiple Loci VNTR Analysis; Anaplasma; Allele; Molecular epidemiology; Genotype; Tick; Genome; Gene; Virology","score_opus":0.027460409493282423,"score_gpt":0.3050934854064325,"score_spread":0.27763307591315006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115174145","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99715436,0.00012578875,0.0023676087,0.000011220199,0.0000024871492,0.000012229015,0.00013885036,0.0000071794407,0.00018017048],"genre_scores_gemma":[0.99103653,0.00012959864,0.008159962,0.000019275963,0.0000041968615,0.000012779064,0.0005046928,0.000004541968,0.00012827384],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935657,0.00025303868,0.00008343168,0.00015138232,0.00009680073,0.000058735684],"domain_scores_gemma":[0.9993561,0.00021543392,0.00020860847,0.00005970785,0.00010349189,0.000056634402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083864003,0.00019127842,0.00022154859,0.0008780178,0.00016696866,0.00042437052,0.0002031008,0.0003340158,0.00016291106],"category_scores_gemma":[0.001348167,0.000105067666,0.00023512056,0.0004305577,0.00021885407,0.00015312637,0.00027064478,0.00021362708,0.00011353321],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035307763,0.00007535365,0.0881086,0.000049120285,0.000066510205,0.00018896525,0.00033256755,0.000460533,0.897838,0.00012220787,0.000037374837,0.01236772],"study_design_scores_gemma":[0.00004808196,0.0014323356,0.72587425,0.000044385088,0.00016923044,0.00342567,0.0005757855,0.0050849305,0.25952765,0.00025781436,0.0035163567,0.000043485685],"about_ca_topic_score_codex":0.00092292996,"about_ca_topic_score_gemma":0.0008244055,"teacher_disagreement_score":0.00092292996,"about_ca_system_score_codex":0.00012934204,"about_ca_system_score_gemma":0.00012866572,"threshold_uncertainty_score":0.0044351816},"labels":[],"label_agreement":null},{"id":"W2115244437","doi":"10.1128/jcm.03554-13","title":"Characterization of Invasive Group B Streptococcus Strains from the Greater Toronto Area, Canada","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Mount Sinai Hospital; University of Toronto; Public Health Ontario","funders":"Wellcome Trust","keywords":"Multilocus sequence typing; Virulence; Streptococcus agalactiae; Streptococcus; Group B; Microbiology; Biology; Typing; Strain (injury); Whole genome sequencing; Gene; Virology; Genetics; Genome; Genotype; Medicine; Bacteria","score_opus":0.030580043170517632,"score_gpt":0.30125730124523975,"score_spread":0.2706772580747221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115244437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916083,0.0010828519,0.0002488819,0.00015337863,0.000017458578,0.00008389633,0.003724273,0.00001369519,0.0030672012],"genre_scores_gemma":[0.9913244,0.0014703915,0.00078640494,0.00025695344,0.000018835823,0.000029670744,0.004095344,0.000013308485,0.0020047321],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993031,0.000022049586,0.00004833714,0.00009490453,0.0003607562,0.00017087148],"domain_scores_gemma":[0.99862146,0.000049536044,0.00020909344,0.000028270128,0.00074317964,0.0003484992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021200762,0.00061375904,0.00037814173,0.0019682476,0.0020746626,0.0010021715,0.0006436457,0.00030555364,0.00117798],"category_scores_gemma":[0.0008997023,0.0002582587,0.00037133426,0.0033943793,0.00043377993,0.00020133812,0.0006757054,0.0003962632,0.00019789134],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015363848,0.000041380546,0.9617764,0.0001630283,0.00006285672,0.0015057214,0.003160745,0.00033996993,0.018795105,0.00010533931,0.0014337758,0.012462123],"study_design_scores_gemma":[0.000004858408,0.00004689948,0.9939195,0.000043258104,0.000022723205,0.0005062717,0.0018171832,0.00028293693,0.00094170525,0.000006909926,0.0023954897,0.000012241802],"about_ca_topic_score_codex":0.9810042,"about_ca_topic_score_gemma":0.9893797,"teacher_disagreement_score":0.018995821,"about_ca_system_score_codex":0.009438563,"about_ca_system_score_gemma":0.014613356,"threshold_uncertainty_score":0.06848186},"labels":[],"label_agreement":null},{"id":"W2115413971","doi":"10.1128/jcm.40.8.2903-2907.2002","title":"Qualitative Detection of Hepatitis C Virus RNA: Comparison of Analytical Sensitivity, Clinical Performance, and Workflow of the Cobas Amplicor HCV Test Version 2.0 and the HCV RNA Transcription-Mediated Amplification Qualitative Assay","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control","keywords":"Virology; Hepatitis C virus; Biology; Hepacivirus; Hepatitis C; Virus","score_opus":0.15279705643647806,"score_gpt":0.46541960328271254,"score_spread":0.3126225468462345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115413971","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8812723,0.010714597,0.1004912,0.0006198877,0.00024709856,0.0007952186,0.001430658,0.0012129557,0.0032161975],"genre_scores_gemma":[0.8954039,0.0020569074,0.09836804,0.00044684645,0.00010009109,0.00049938087,0.0015274687,0.0002065726,0.0013906885],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9801429,0.008940759,0.0010868353,0.0019182129,0.007494374,0.0004169022],"domain_scores_gemma":[0.97360796,0.012785427,0.002902354,0.0015946652,0.008358314,0.0007512585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.024305033,0.0008767542,0.0009305559,0.0017478924,0.00039517,0.0021313073,0.0019100687,0.001010843,0.00076612923],"category_scores_gemma":[0.027585488,0.0008830816,0.0004739937,0.0012294227,0.0013366472,0.00088413863,0.0010730329,0.0006868561,0.00051100994],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.031946115,0.0018104922,0.23799019,0.004396824,0.0011841501,0.0005273012,0.003811592,0.005039222,0.49984938,0.001559437,0.0024668959,0.20941846],"study_design_scores_gemma":[0.0011460895,0.020825073,0.42739663,0.0006353852,0.0013001208,0.0074046934,0.0017125097,0.057248846,0.47273228,0.0016193038,0.007432314,0.0005466978],"about_ca_topic_score_codex":0.0035563528,"about_ca_topic_score_gemma":0.0032483663,"teacher_disagreement_score":0.024305033,"about_ca_system_score_codex":0.0015189442,"about_ca_system_score_gemma":0.0015510302,"threshold_uncertainty_score":0.12853885},"labels":[],"label_agreement":null},{"id":"W2115609538","doi":"10.1128/jcm.00269-15","title":"Fever in a Visitor to Canada: a Case of Mistaken Identity","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Travel-related health issues","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health; Toronto General Hospital; University Health Network; University of Toronto; Public Health Ontario; McMaster University; HalTech","funders":"","keywords":"Babesiosis; Babesia; Malaria; Blood smear; Biology; Virology; Plasmodium (life cycle); Immunology; Polymerase chain reaction; Medicine; Parasite hosting; Genetics","score_opus":0.12283435131277748,"score_gpt":0.4690591640311864,"score_spread":0.34622481271840894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115609538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97868335,0.0016489328,0.00065096293,0.0049449,0.00026891375,0.00009318092,0.00018147352,0.00007443156,0.0134537695],"genre_scores_gemma":[0.99718946,0.00050750736,0.00039044442,0.0008950971,0.00011041132,0.000007108585,0.000041341667,0.000015224581,0.00084340543],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9989203,0.000088631015,0.000051414117,0.00011350823,0.00015410275,0.0006720457],"domain_scores_gemma":[0.9985568,0.00029036123,0.00030070002,0.00007846092,0.00020542581,0.0005681804],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002717991,0.0014706055,0.0005721773,0.0019117576,0.00858327,0.0019856554,0.0013932608,0.0040204097,0.002785426],"category_scores_gemma":[0.0036886923,0.0008650396,0.0006355788,0.0021397746,0.0026436474,0.00092341413,0.0019385158,0.0037441736,0.00049379485],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000690799,0.000055812798,0.042871058,0.000030109435,0.000010476477,0.95167774,0.0017818125,0.000089329216,0.0004705524,0.00030250972,0.00085407303,0.0017875669],"study_design_scores_gemma":[0.00001798919,0.00006540669,0.023756007,0.00006155176,0.000023339051,0.96810794,0.005227642,0.0006162027,0.00027003186,0.00029279018,0.0015251382,0.000035935158],"about_ca_topic_score_codex":0.5118612,"about_ca_topic_score_gemma":0.57291794,"teacher_disagreement_score":0.4881388,"about_ca_system_score_codex":0.009188748,"about_ca_system_score_gemma":0.008348358,"threshold_uncertainty_score":0.9820271},"labels":[],"label_agreement":null},{"id":"W2115730237","doi":"10.1128/jcm.41.6.2471-2476.2003","title":"Identification by Subtractive Hybridization of a Novel Insertion Element Specific for Two Widespread <i>Burkholderia cepacia</i> Genomovar III Strains","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Cystic Fibrosis Foundation","keywords":"Burkholderia cepacia complex; Burkholderia; Suppression subtractive hybridization; Biology; Cystic fibrosis; Microbiology; Genotyping; Strain (injury); Virology; Insertion sequence; Burkholderia cenocepacia; Bacteria; Genotype; Genetics; Gene; Genome","score_opus":0.06349175994297698,"score_gpt":0.41192343821353183,"score_spread":0.3484316782705549,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115730237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97698534,0.00029310773,0.01900369,0.00012218197,0.000048636517,0.000096624586,0.0009092813,0.00012613526,0.002415033],"genre_scores_gemma":[0.9707054,0.00044593835,0.019879872,0.0002745084,0.000016094918,0.000097000004,0.0055458006,0.00006907662,0.0029663437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99967337,0.000030187759,0.000025078232,0.000094918774,0.00011441357,0.00006214504],"domain_scores_gemma":[0.9997323,0.00008434178,0.00006541789,0.00004103158,0.000036235673,0.000040629737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002101334,0.00040241753,0.00036703277,0.0005672248,0.00021561138,0.00038737454,0.00040407683,0.00038324064,0.0008575938],"category_scores_gemma":[0.00037110125,0.00024649734,0.0005638435,0.00039700602,0.00040556703,0.0001450469,0.0004645324,0.00086615264,0.000379976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000034139746,0.000010212186,0.00038372434,0.000010870898,0.0000033384458,0.000023272272,0.000020118607,0.000022233617,0.9985832,0.00003695448,0.000012622447,0.0008593076],"study_design_scores_gemma":[0.000022090953,0.000426552,0.055881873,0.000021275846,0.0001151026,0.0015470037,0.00028873884,0.0026323854,0.93298686,0.00013993705,0.0059159803,0.000022113023],"about_ca_topic_score_codex":0.0014513148,"about_ca_topic_score_gemma":0.002605271,"teacher_disagreement_score":0.0014513148,"about_ca_system_score_codex":0.000488429,"about_ca_system_score_gemma":0.00031728216,"threshold_uncertainty_score":0.0035438538},"labels":[],"label_agreement":null},{"id":"W2115822252","doi":"10.1128/jcm.00620-12","title":"Gene Sequencing for Routine Verification of Pyrazinamide Resistance in Mycobacterium tuberculosis: a Role for <i>pncA</i> but Not <i>rpsA</i>","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Public Health","funders":"","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Tuberculosis; Biology; Gene; Microbiology; Genetics; Medicine; Pathology","score_opus":0.0680637822022318,"score_gpt":0.38928974067238553,"score_spread":0.3212259584701537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115822252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9748011,0.002440028,0.016114933,0.00081251195,0.00011055089,0.00038794635,0.0011563018,0.0005893453,0.0035872108],"genre_scores_gemma":[0.9631312,0.0011503202,0.03306228,0.00055344024,0.000060973627,0.0001282841,0.0009975017,0.000114389026,0.00080159755],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834704,0.0005356501,0.00014785769,0.00032889392,0.00051177037,0.00012881981],"domain_scores_gemma":[0.99815494,0.00067788025,0.00033997203,0.00017078116,0.00046295187,0.00019344605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011333908,0.0005630154,0.00055620575,0.00042849797,0.00025477604,0.00066414627,0.00047737057,0.0008529335,0.0012868599],"category_scores_gemma":[0.0036668305,0.00021371753,0.00037313165,0.00026847387,0.0003832357,0.00037111362,0.0003406316,0.00049079326,0.00050940627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021497025,0.00048654215,0.044095784,0.00030180288,0.0000729545,0.0006704083,0.00027955146,0.001366324,0.878413,0.00024521287,0.0006823048,0.0712364],"study_design_scores_gemma":[0.00022068869,0.0059838416,0.048640255,0.000090958754,0.00032381955,0.006032163,0.00019594195,0.008080587,0.9231992,0.00030103498,0.0068820743,0.000049483],"about_ca_topic_score_codex":0.0010884233,"about_ca_topic_score_gemma":0.0026893457,"teacher_disagreement_score":0.0012868599,"about_ca_system_score_codex":0.0003269525,"about_ca_system_score_gemma":0.0007476449,"threshold_uncertainty_score":0.005994022},"labels":[],"label_agreement":null},{"id":"W2115919296","doi":"10.1128/jcm.01946-08","title":"<i>Mycobacterium tuberculosis</i> in Ontario, Canada: Insights from IS <i>6110</i> Restriction Fragment Length Polymorphism and Mycobacterial Interspersed Repetitive-Unit-Variable-Number Tandem-Repeat Genotyping","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto Public Health","funders":"","keywords":"Variable number tandem repeat; Genotyping; Restriction fragment length polymorphism; Mycobacterium tuberculosis; Tandem repeat; Biology; Genotype; Tuberculosis; Genetics; Polymorphism (computer science); Virology; Medicine; Gene","score_opus":0.028712138786058546,"score_gpt":0.31357083770662203,"score_spread":0.2848586989205635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115919296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893182,0.0023563409,0.00026710005,0.0009389356,0.000011343792,0.00006674516,0.0022361765,0.0000075544044,0.0047976216],"genre_scores_gemma":[0.9951668,0.0014771617,0.0004531079,0.00031726682,0.000007655735,0.000015056755,0.0007929927,0.000007853185,0.0017620161],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993231,0.00005529063,0.000030576375,0.00007920622,0.00023944567,0.0002723154],"domain_scores_gemma":[0.9989496,0.00006404688,0.00022460356,0.000021030093,0.0005255809,0.00021511086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039711164,0.00026052975,0.00032491316,0.0014521637,0.0024598553,0.001194412,0.0006769045,0.0003706077,0.0012255184],"category_scores_gemma":[0.0010163423,0.00034724566,0.00021557459,0.003515764,0.0007871707,0.00025538428,0.00053990167,0.0003848998,0.00019349653],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014279898,0.000047234702,0.96669185,0.0002009631,0.000049174912,0.0008931786,0.0056348997,0.00029592868,0.003785036,0.0003768288,0.0020457779,0.019836232],"study_design_scores_gemma":[0.0000069035173,0.00001663609,0.9932789,0.00006122068,0.000022837588,0.00016636493,0.0028387927,0.0001779434,0.00019058616,0.000040267918,0.0031900026,0.000009417623],"about_ca_topic_score_codex":0.99621093,"about_ca_topic_score_gemma":0.99850094,"teacher_disagreement_score":0.022227764,"about_ca_system_score_codex":0.022227764,"about_ca_system_score_gemma":0.03383167,"threshold_uncertainty_score":0.1612745},"labels":[],"label_agreement":null},{"id":"W2116184273","doi":"10.1128/jcm.01947-10","title":"First Case of Invasive Human Infection Caused by Cupriavidus metallidurans","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"Institut National de Santé Publique du Québec","keywords":"Microbiology; Virology; Biology","score_opus":0.019566768533440963,"score_gpt":0.3432868488378248,"score_spread":0.3237200803043838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116184273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9294878,0.011183388,0.011288656,0.0055732126,0.002125807,0.00040658913,0.0005673687,0.00055746554,0.038809784],"genre_scores_gemma":[0.9867365,0.0030595928,0.00274365,0.0018762833,0.0018688116,0.00005453954,0.00016858455,0.000046671546,0.003445441],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9992003,0.000111757065,0.00007258853,0.00014794622,0.00013485581,0.0003326683],"domain_scores_gemma":[0.9975922,0.0007818191,0.0005370876,0.00031795242,0.00019201307,0.0005789104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036637,0.0019574948,0.0014107252,0.00094892236,0.0022872656,0.0013010094,0.0009834442,0.0055529205,0.003328171],"category_scores_gemma":[0.0032155137,0.0009769403,0.0012198334,0.00055311515,0.0015297979,0.0011709861,0.0016979598,0.0036481735,0.0011187813],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012402411,0.0002444159,0.010559563,0.00014288095,0.000028781753,0.97934955,0.000923252,0.00009062961,0.0022089826,0.00041890706,0.002124366,0.003784586],"study_design_scores_gemma":[0.00002526091,0.00029695348,0.005457476,0.00004175255,0.000030204186,0.9889058,0.00026764313,0.00010058906,0.0009942419,0.00019257584,0.0036637452,0.000023785622],"about_ca_topic_score_codex":0.0013433159,"about_ca_topic_score_gemma":0.0016787219,"teacher_disagreement_score":0.0055529205,"about_ca_system_score_codex":0.0005648446,"about_ca_system_score_gemma":0.00052642263,"threshold_uncertainty_score":0.01113385},"labels":[],"label_agreement":null},{"id":"W2116201698","doi":"10.1128/jcm.01258-14","title":"Detection of Chronic Wasting Disease in the Lymph Nodes of Free-Ranging Cervids by Real-Time Quaking-Induced Conversion","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; National Institutes of Health","keywords":"Chronic wasting disease; Lymph node; Transmissible spongiform encephalopathy; Thioflavin; Biology; Virology; Pathology; Veterinary medicine; Disease; Medicine; Prion protein; Scrapie; Alzheimer's disease","score_opus":0.01415615727299673,"score_gpt":0.2992756413144967,"score_spread":0.28511948404149995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116201698","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947008,0.0003656299,0.003928932,0.00001661126,0.000009498857,0.00008223081,0.0001941306,0.000038016628,0.0006640954],"genre_scores_gemma":[0.9786416,0.0004976866,0.018804679,0.000106755375,0.0000127011435,0.00014850493,0.00085859175,0.000021728794,0.0009077513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995061,0.00009463853,0.00006154959,0.0001777745,0.00009865526,0.000061264036],"domain_scores_gemma":[0.9994174,0.00022577052,0.00012395745,0.0000711468,0.000120844416,0.000040983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006090634,0.00032671413,0.00021238861,0.00052787905,0.0002518203,0.0003960625,0.00021603612,0.00043330013,0.00043482365],"category_scores_gemma":[0.0006979609,0.00021005765,0.000157545,0.00027252774,0.0005086746,0.00021321684,0.00018776162,0.00034012296,0.00016166091],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094871044,0.000012982658,0.004485538,0.000027499233,0.0000041032336,0.00005555776,0.000090831934,0.000019003342,0.99429893,0.000014883016,0.000008785067,0.00088694436],"study_design_scores_gemma":[0.000037324007,0.000995258,0.26685846,0.000029782417,0.000084433625,0.0015941054,0.00039828545,0.002611513,0.72568023,0.000079890764,0.001606036,0.000024770305],"about_ca_topic_score_codex":0.0013700174,"about_ca_topic_score_gemma":0.0028878439,"teacher_disagreement_score":0.0013700174,"about_ca_system_score_codex":0.00021082012,"about_ca_system_score_gemma":0.00012788594,"threshold_uncertainty_score":0.0032210946},"labels":[],"label_agreement":null},{"id":"W2116283756","doi":"10.1128/jcm.05646-11","title":"Generic Microtiter Plate Assay for Triaging Clinical Specimens Prior to Genotyping of Human Papillomavirus DNA via Consensus PCR","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Armand Frappier Museum; Institut National de Santé Publique du Québec; Institut National de la Recherche Scientifique; University of Toronto; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Genotyping; Human papillomavirus; Confidence interval; Microtiter plate; Papillomaviridae; Predictive value; Polymerase chain reaction; Biology; Virology; Genotype; Molecular biology; DNA; Medicine; Internal medicine; Genetics; Cancer; Cervical cancer; Gene","score_opus":0.2795400495500939,"score_gpt":0.4761219655103938,"score_spread":0.1965819159602999,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116283756","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20020041,0.005486701,0.7734579,0.00037452212,0.0010128437,0.0039657652,0.00301696,0.0035926786,0.008892224],"genre_scores_gemma":[0.15979093,0.0027556557,0.8194304,0.00051779463,0.00022098067,0.004036407,0.0053318553,0.00022353414,0.007692434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98737574,0.004079226,0.00083539105,0.002088639,0.005117652,0.00050335383],"domain_scores_gemma":[0.9950118,0.0020878827,0.00064304256,0.0009865394,0.000978921,0.00029183974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006528067,0.0017385755,0.0023777084,0.0027530456,0.0004853984,0.00077259453,0.0029068387,0.0013071838,0.0049657896],"category_scores_gemma":[0.0070882887,0.0009217405,0.0012257543,0.0015857696,0.0008070855,0.00050819456,0.0010743585,0.0015917957,0.003178162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002676619,0.0009941227,0.014242433,0.0014128417,0.00027613493,0.000200198,0.00028503384,0.0017759692,0.90738744,0.0011483293,0.0036358042,0.06596503],"study_design_scores_gemma":[0.00075496343,0.012119703,0.058125895,0.00032035552,0.0009853591,0.0074099293,0.00027180935,0.05326282,0.8327221,0.001622353,0.031982724,0.00042205345],"about_ca_topic_score_codex":0.00057046354,"about_ca_topic_score_gemma":0.0016687552,"teacher_disagreement_score":0.006528067,"about_ca_system_score_codex":0.0005095357,"about_ca_system_score_gemma":0.0008820637,"threshold_uncertainty_score":0.034524143},"labels":[],"label_agreement":null},{"id":"W2116624360","doi":"10.1128/jcm.38.3.1298-1301.2000","title":"Genetic and Antigenic Evidence Supports the Separation of<i>Hepatozoon canis</i>and<i>Hepatozoon americanum</i>at the Species Level","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Hepatozoon; Canis; Biology; 18S ribosomal RNA; Zoology; Virology; Ribosomal RNA; Genetics; Gene; Ecology","score_opus":0.05119905593543107,"score_gpt":0.3352109561685153,"score_spread":0.28401190023308426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116624360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99007684,0.0003683724,0.0019593902,0.00025666849,0.00006142187,0.0000320441,0.00063034403,0.000038793485,0.006576227],"genre_scores_gemma":[0.9933402,0.00031451564,0.003136521,0.00019848648,0.000062522035,0.000018526001,0.0019995493,0.000015328376,0.0009143837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997949,0.000018954077,0.000019737017,0.000057567446,0.00006255881,0.00004622922],"domain_scores_gemma":[0.99881697,0.00011031438,0.0004112137,0.00006345912,0.0003523737,0.00024570528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002473312,0.0003069566,0.00022433893,0.0007306026,0.00043361765,0.00034446002,0.0002469026,0.0003053207,0.002688231],"category_scores_gemma":[0.00058759644,0.00015318129,0.00022760798,0.0008625404,0.00051495095,0.00026473287,0.00030497072,0.0004987866,0.00063012604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036993335,0.00011644721,0.021394854,0.00015278347,0.000049036,0.00018673525,0.0001517908,0.00006134056,0.97228897,0.00062097865,0.00016669687,0.0044403286],"study_design_scores_gemma":[0.000071172544,0.0015209723,0.70144755,0.000066407716,0.00026921608,0.005863214,0.0009755621,0.0016070508,0.2744488,0.0020372872,0.011648717,0.00004394643],"about_ca_topic_score_codex":0.0028059713,"about_ca_topic_score_gemma":0.0028640805,"teacher_disagreement_score":0.0028059713,"about_ca_system_score_codex":0.00032481342,"about_ca_system_score_gemma":0.00042144812,"threshold_uncertainty_score":0.00899303},"labels":[],"label_agreement":null},{"id":"W2116704810","doi":"10.1128/jcm.01554-07","title":"Evaluation of a Commercial Direct Fluorescent-Antibody Assay for Human Metapneumovirus in Respiratory Specimens","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Human metapneumovirus; Metapneumovirus; Virology; Gold standard (test); Antibody; Direct fluorescent antibody; Biology; Respiratory system; Medicine; Immunology; Respiratory tract infections; Internal medicine","score_opus":0.35447380404505113,"score_gpt":0.5503551016731884,"score_spread":0.19588129762813722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116704810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88961154,0.009067824,0.09470067,0.00038950754,0.00046588882,0.0010710554,0.00082744064,0.0006652573,0.0032008376],"genre_scores_gemma":[0.83530617,0.0019599332,0.15875544,0.00036803813,0.00014681986,0.0005015654,0.001373866,0.00006538059,0.0015229137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9901765,0.0030273097,0.00047698195,0.0016178234,0.004440785,0.00026055524],"domain_scores_gemma":[0.99155116,0.004848265,0.0005733102,0.0004636219,0.0023118407,0.00025184822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077194064,0.0011903277,0.0009572086,0.0017275772,0.0005336028,0.00077114406,0.0012299751,0.0018855929,0.001007249],"category_scores_gemma":[0.0109571945,0.00063945435,0.00055492745,0.0007418904,0.0011558854,0.0005808563,0.0005588324,0.00070106075,0.000684502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020827218,0.000812095,0.031192563,0.00074234616,0.00018991114,0.00017909457,0.0002587915,0.0007702783,0.9294868,0.0002850488,0.00043234645,0.03356797],"study_design_scores_gemma":[0.00044393566,0.011799091,0.06808451,0.00015695562,0.0005293762,0.0040090666,0.00020243824,0.02661909,0.8840669,0.0002646244,0.0037016768,0.00012243935],"about_ca_topic_score_codex":0.0032478152,"about_ca_topic_score_gemma":0.00575314,"teacher_disagreement_score":0.0077194064,"about_ca_system_score_codex":0.00099809,"about_ca_system_score_gemma":0.00079973065,"threshold_uncertainty_score":0.04082465},"labels":[],"label_agreement":null},{"id":"W2116739755","doi":"10.1128/jcm.01622-06","title":"Genetic Profiling of the Oral Microbiota Associated with Severe Early-Childhood Caries","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; National Institutes of Health; York University","keywords":"Temperature gradient gel electrophoresis; Biology; Saliva; Dental plaque; Phylotype; Veillonella; 16S ribosomal RNA; Diversity index; Microbiology; Metagenomics; Population; Species richness; Bacteria; Genetics; Gene; Medicine; Streptococcus; Ecology","score_opus":0.02663912924483204,"score_gpt":0.3237555707807522,"score_spread":0.29711644153592015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116739755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996426,0.0001836957,0.000063840154,0.0000046272744,9.564806e-7,0.0000027110195,0.000045481185,8.9322555e-7,0.00005522661],"genre_scores_gemma":[0.9992902,0.00016288532,0.00030992142,0.000009277867,0.0000026225366,0.000003611205,0.00014562064,0.0000014669096,0.000074362986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997181,0.000046843325,0.000028451526,0.00006779037,0.00007710427,0.00006156969],"domain_scores_gemma":[0.99958616,0.00006293761,0.00016973265,0.000019129537,0.000071557115,0.000090498186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021183747,0.0002456766,0.00037141377,0.00069727015,0.00030602622,0.000390599,0.00009307553,0.00027445678,0.00040838303],"category_scores_gemma":[0.00073116296,0.0001543884,0.00021323047,0.0005126577,0.00026112955,0.00012712422,0.00034588823,0.00027774324,0.00008294157],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007516402,0.000105753454,0.777324,0.00014711705,0.0001245391,0.00056171045,0.000946838,0.0001369477,0.20819603,0.000041817824,0.00008383309,0.011579678],"study_design_scores_gemma":[0.0000035542625,0.00023465173,0.9943298,0.000009841056,0.000033150278,0.0009994196,0.0004726021,0.00009908763,0.0035929424,0.000019702198,0.00020048844,0.000004795887],"about_ca_topic_score_codex":0.0014571194,"about_ca_topic_score_gemma":0.0018232117,"teacher_disagreement_score":0.0014571194,"about_ca_system_score_codex":0.00013481062,"about_ca_system_score_gemma":0.00016424684,"threshold_uncertainty_score":0.002897203},"labels":[],"label_agreement":null},{"id":"W2116990512","doi":"10.1128/jcm.00555-13","title":"Rapid Molecular Detection of Macrolide Resistance in the Mycobacterium avium Complex: Are We There Yet?","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"23S ribosomal RNA; Biology; Microbiology; Mycobacterium; Ribosomal RNA; Mycobacterium avium complex; Macrolide Antibiotics; Gene; Computational biology; Genetics; Bacteria; Antibiotics; Erythromycin; RNA","score_opus":0.06487482186057525,"score_gpt":0.3676081223383696,"score_spread":0.30273330047779434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116990512","genre_codex":"empirical","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6107635,0.29546565,0.04927389,0.031970896,0.00416815,0.00072551845,0.0006439069,0.0010692864,0.0059191855],"genre_scores_gemma":[0.7732624,0.110792674,0.10196839,0.007431467,0.001366504,0.00020910043,0.0009256877,0.00020012703,0.0038437198],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9952551,0.0013259919,0.0003465568,0.00043010534,0.0021956847,0.0004465771],"domain_scores_gemma":[0.99377394,0.0028376325,0.0008605059,0.00037606704,0.0016990978,0.00045274783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0061729806,0.0010688927,0.0012207656,0.00127024,0.00043219083,0.0029071358,0.0009883351,0.0028766172,0.0021522709],"category_scores_gemma":[0.010233009,0.0005292923,0.0004892992,0.0004621474,0.00145422,0.0029313567,0.00084444886,0.0018996611,0.0013327434],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014027844,0.0015673477,0.05234497,0.0032038752,0.0002159584,0.0009236572,0.00063918054,0.0009529954,0.39064997,0.0018260216,0.0052103833,0.54106283],"study_design_scores_gemma":[0.0004991418,0.02095499,0.10185628,0.0033509776,0.0013198701,0.02193341,0.0039117723,0.020061057,0.62975866,0.0056846165,0.18998264,0.0006865616],"about_ca_topic_score_codex":0.0009166822,"about_ca_topic_score_gemma":0.00178116,"teacher_disagreement_score":0.0061729806,"about_ca_system_score_codex":0.0005465408,"about_ca_system_score_gemma":0.0010509558,"threshold_uncertainty_score":0.03264624},"labels":[],"label_agreement":null},{"id":"W2117006185","doi":"10.1128/jcm.02235-09","title":"Development and Evaluation of a Flocked Nasal Midturbinate Swab for Self-Collection in Respiratory Virus Infection Diagnostic Testing","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"Canadian Institutes of Health Research","keywords":"Asymptomatic; Medicine; Multiplex; Respiratory system; Virology; Multiplex polymerase chain reaction; Internal medicine; Biology; Polymerase chain reaction; Bioinformatics","score_opus":0.18767506881822496,"score_gpt":0.4793614270462921,"score_spread":0.2916863582280671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117006185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9797084,0.00073581265,0.016301079,0.00012031176,0.00010900766,0.0014930897,0.00020612744,0.00014050183,0.0011856991],"genre_scores_gemma":[0.9203859,0.0005205883,0.076316185,0.00029282676,0.00004689676,0.0008360542,0.0008219068,0.000027004044,0.00075267203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99716586,0.00082128524,0.00021842941,0.00034843275,0.0012682739,0.00017766602],"domain_scores_gemma":[0.99820507,0.00040554188,0.00018300589,0.00014715584,0.0008608163,0.0001984573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028168932,0.00073028693,0.00064561324,0.0007690441,0.0003966538,0.00067114603,0.00068634085,0.00084301224,0.0005433516],"category_scores_gemma":[0.004673165,0.00045240598,0.00019933798,0.0002100018,0.00036812434,0.00049820956,0.00058187003,0.00042271556,0.00037478437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010545525,0.00091146055,0.16022633,0.00033322038,0.000055178447,0.0009202059,0.00091394084,0.00028843433,0.77057165,0.00010818138,0.00042586483,0.06419101],"study_design_scores_gemma":[0.00024842346,0.018500982,0.52431077,0.00027586432,0.00024114725,0.015001954,0.0015716454,0.011351015,0.42054126,0.00011214164,0.0077487393,0.00009610075],"about_ca_topic_score_codex":0.0018689523,"about_ca_topic_score_gemma":0.0034461566,"teacher_disagreement_score":0.0028168932,"about_ca_system_score_codex":0.0002724516,"about_ca_system_score_gemma":0.0005246811,"threshold_uncertainty_score":0.0148973465},"labels":[],"label_agreement":null},{"id":"W2117113475","doi":"10.1128/jcm.00426-07","title":"Evaluation of BBL CHROMagar O157 versus Sorbitol-MacConkey Medium for Routine Detection of <i>Escherichia coli</i> O157 in a Centralized Regional Clinical Microbiology Laboratory","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Escherichia coli; Microbiology; Sorbitol; Predictive value; Enterobacteriaceae; Biology; Medicine; Food science; Internal medicine; Biochemistry","score_opus":0.08155045926034656,"score_gpt":0.4293129235192052,"score_spread":0.34776246425885865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117113475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99818534,0.0005761023,0.0007677563,0.00005122345,0.000022398024,0.000039624225,0.000055772318,0.000023036027,0.00027864837],"genre_scores_gemma":[0.99599516,0.0002841853,0.0032283475,0.000035393266,0.000035749763,0.000021631507,0.00019671656,0.00001077387,0.00019203138],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9942168,0.0022847527,0.0004633024,0.0010171549,0.0016807681,0.0003372275],"domain_scores_gemma":[0.9920168,0.0036391206,0.0013933135,0.00038633918,0.0016433239,0.0009211638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005624798,0.00070043,0.00073110923,0.00075755024,0.00041269916,0.00079039944,0.00082733145,0.0006432192,0.0006723868],"category_scores_gemma":[0.011357146,0.00043788276,0.0004272961,0.00083421904,0.0006435985,0.0006071722,0.0004199258,0.00043122622,0.00039885537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.042221244,0.0060435417,0.4094725,0.0012060669,0.00057600817,0.00095071906,0.0019072234,0.0013486553,0.45915526,0.0001329512,0.00083451474,0.07615136],"study_design_scores_gemma":[0.0008725867,0.11149792,0.5685121,0.000103960505,0.00075092155,0.003541819,0.00082026125,0.0054274937,0.30674237,0.000053943928,0.001540315,0.00013636099],"about_ca_topic_score_codex":0.0036691085,"about_ca_topic_score_gemma":0.00679721,"teacher_disagreement_score":0.005624798,"about_ca_system_score_codex":0.0011238797,"about_ca_system_score_gemma":0.0008378712,"threshold_uncertainty_score":0.029747128},"labels":[],"label_agreement":null},{"id":"W2117239426","doi":"10.1128/jcm.02321-06","title":"Community-Acquired Lung Abscess Caused by <i>Legionella micdadei</i> in a Myeloma Patient Receiving Thalidomide Treatment","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Multiple myeloma; Thalidomide; Medicine; Abscess; Legionella; Lung; Microbiology; Internal medicine; Surgery; Bacteria; Biology","score_opus":0.03737333747699631,"score_gpt":0.3669206656060382,"score_spread":0.32954732812904186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117239426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879038,0.0019045419,0.0008689942,0.0024798913,0.00012415832,0.0001047455,0.00009787771,0.00009405628,0.0064219376],"genre_scores_gemma":[0.99689996,0.0008106601,0.00047254818,0.0008699801,0.0002986001,0.000012310391,0.00004270233,0.000012804664,0.00058039755],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995394,0.00007263381,0.00006455362,0.00008316825,0.00008021526,0.00016004185],"domain_scores_gemma":[0.9987521,0.00044084273,0.00026506913,0.000045418576,0.00011856842,0.000378001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003066413,0.0011095077,0.0008414745,0.0012216822,0.0027039447,0.0009976384,0.00072217296,0.0034070069,0.0016676077],"category_scores_gemma":[0.001916098,0.0007608265,0.00066639576,0.0008027274,0.0010340337,0.0009613155,0.0007076147,0.0025784012,0.00055140886],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010557234,0.00015174055,0.03731921,0.000050073242,0.000013114272,0.95752716,0.00050847325,0.00008248449,0.0016748619,0.000090719535,0.00046063252,0.002016008],"study_design_scores_gemma":[0.000024682033,0.00033219976,0.044107,0.00003660488,0.000038818216,0.95272744,0.0006026526,0.00041137097,0.0009559012,0.00012487084,0.00061606424,0.000022418704],"about_ca_topic_score_codex":0.0064073936,"about_ca_topic_score_gemma":0.0064102444,"teacher_disagreement_score":0.0064073936,"about_ca_system_score_codex":0.0010921515,"about_ca_system_score_gemma":0.0008650297,"threshold_uncertainty_score":0.012740195},"labels":[],"label_agreement":null},{"id":"W2117239946","doi":"10.1128/jcm.43.6.2771-2781.2005","title":"Comparison of<i>Campylobacter jejuni</i>Lipooligosaccharide Biosynthesis Loci from a Variety of Sources","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Microbiology; Biology; Campylobacter; Bacteria; Genetics","score_opus":0.0755612715222747,"score_gpt":0.3607498482607013,"score_spread":0.28518857673842657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117239946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987423,0.00016280873,0.0003492801,0.000018221204,0.000003016141,0.000009895734,0.0003128998,0.000008618563,0.0003930546],"genre_scores_gemma":[0.9951871,0.0001691387,0.0016714339,0.00003612153,0.000006483,0.000019292227,0.0024892788,0.000012712518,0.00040851504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997042,0.000040666037,0.000032197353,0.00008180242,0.00007262639,0.000068609384],"domain_scores_gemma":[0.9993394,0.00023190194,0.00014695723,0.000039491002,0.00013647186,0.00010568381],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022165084,0.0003879984,0.00026148182,0.0014760962,0.00021907537,0.0004415279,0.00018687108,0.00029940048,0.001081705],"category_scores_gemma":[0.0009895052,0.0001687631,0.00025665213,0.000633231,0.00022808593,0.00020425083,0.00024753006,0.00025017626,0.000319276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062829256,0.00010384282,0.040702518,0.0001419795,0.000059321534,0.00021086278,0.00026171395,0.00018134585,0.94757694,0.000047224537,0.000081405946,0.010004645],"study_design_scores_gemma":[0.00003825931,0.0013078364,0.7921227,0.00004537577,0.00016245597,0.0025507691,0.00055328134,0.0010646668,0.19983615,0.000095942305,0.0021955592,0.000026950562],"about_ca_topic_score_codex":0.0018268437,"about_ca_topic_score_gemma":0.0017960995,"teacher_disagreement_score":0.0018268437,"about_ca_system_score_codex":0.00025128212,"about_ca_system_score_gemma":0.0001609804,"threshold_uncertainty_score":0.0036323667},"labels":[],"label_agreement":null},{"id":"W2117243849","doi":"10.1128/jcm.40.12.4576-4580.2002","title":"Hepatitis E Virus (HEV) Capsid Antigens Derived from Viruses of Human and Swine Origin Are Equally Efficient for Detecting Anti-HEV by Enzyme Immunoassay","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis Viruses Studies and Epidemiology","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Hepatitis E virus; Virology; Antigen; Seroconversion; Immunoassay; Biology; Capsid; Epitope; Recombinant DNA; Virus; Antibody; Serology; Immunology; Genotype; Gene","score_opus":0.12092299164080027,"score_gpt":0.39164586861149264,"score_spread":0.27072287697069236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117243849","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9339591,0.0032781682,0.05623923,0.000087616245,0.000087863584,0.00018090199,0.0001653764,0.00040887864,0.0055929343],"genre_scores_gemma":[0.94995564,0.00080913794,0.046463966,0.00015189251,0.000034714983,0.00013614933,0.0003895105,0.000037903264,0.0020210883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9882535,0.0051021976,0.001063836,0.002095282,0.0029424343,0.000542796],"domain_scores_gemma":[0.9948986,0.0026149051,0.0005513176,0.000685159,0.0011227434,0.0001271182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006713952,0.00079720723,0.000538289,0.0012920125,0.00020056519,0.0008760302,0.00052900554,0.0009330986,0.00124245],"category_scores_gemma":[0.005866306,0.00070400233,0.00043098722,0.000662916,0.00040212207,0.00052519474,0.00061732595,0.0005141792,0.00078129984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081223197,0.00028952683,0.073955655,0.00026987048,0.0002632348,0.00016360419,0.0003761,0.0003580584,0.8887571,0.00031058126,0.00035166947,0.03409224],"study_design_scores_gemma":[0.00020055173,0.0024510873,0.27485517,0.00013096917,0.0003513256,0.006729995,0.0003675318,0.014129588,0.68834823,0.0006966813,0.011662974,0.00007594805],"about_ca_topic_score_codex":0.00047833714,"about_ca_topic_score_gemma":0.0008257287,"teacher_disagreement_score":0.006713952,"about_ca_system_score_codex":0.00020977367,"about_ca_system_score_gemma":0.00014947308,"threshold_uncertainty_score":0.035507202},"labels":[],"label_agreement":null},{"id":"W2117265826","doi":"10.1128/jcm.00354-11","title":"MassARRAY Spectrometry Is More Sensitive than PreTect HPV-Proofer and Consensus PCR for Type-Specific Detection of High-Risk Oncogenic Human Papillomavirus Genotypes in Cervical Cancer","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. John’s Health Sciences Centre; Dr. H. Bliss Murphy Cancer Centre","funders":"Public Health Agency","keywords":"Cervical cancer; Human papillomavirus; Genotype; Kappa; Internal medicine; Confidence interval; Papillomaviridae; Medicine; Biology; Oncology; Virology; Cancer; Gene; Genetics","score_opus":0.12409623840406835,"score_gpt":0.41298314615477033,"score_spread":0.28888690775070197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117265826","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85621727,0.029925734,0.09893587,0.0014215762,0.00046289017,0.00018622533,0.0023158188,0.0016221136,0.008912539],"genre_scores_gemma":[0.91497684,0.0050339056,0.07093783,0.0009959418,0.000388922,0.00021429166,0.0022991337,0.00017053113,0.004982652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9920672,0.0023533858,0.00036763411,0.0027675764,0.0022035611,0.00024053824],"domain_scores_gemma":[0.99241877,0.003686572,0.0016707423,0.0008687484,0.001133215,0.00022199197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006781589,0.0010360068,0.0013199382,0.0017479024,0.0003890681,0.0012801753,0.0005172732,0.0011770496,0.0023769045],"category_scores_gemma":[0.008423263,0.0006151537,0.0007845699,0.0009643096,0.00074307167,0.0012929197,0.00053298724,0.00086811546,0.0012365133],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037874856,0.00042885428,0.2991891,0.00096380943,0.0010441081,0.00023168029,0.00038347614,0.0021723278,0.53467643,0.00086245907,0.0032601363,0.15300018],"study_design_scores_gemma":[0.00015741182,0.0034769562,0.7122348,0.00014275094,0.0008582944,0.005521245,0.00020889904,0.011717752,0.24855849,0.00087997655,0.01606294,0.00018058477],"about_ca_topic_score_codex":0.0012388381,"about_ca_topic_score_gemma":0.0018282204,"teacher_disagreement_score":0.006781589,"about_ca_system_score_codex":0.0006371074,"about_ca_system_score_gemma":0.00044149568,"threshold_uncertainty_score":0.03586495},"labels":[],"label_agreement":null},{"id":"W2117342011","doi":"10.1128/jcm.01390-12","title":"New Proteins for a New Perspective on Syphilis Diagnosis","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control; University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Syphilis; Syphilis Serodiagnosis; Perspective (graphical); Treponematosis; Virology; Medicine; Computational biology; Biology; Immunology; Sexually transmitted disease; Human immunodeficiency virus (HIV); Computer science; Artificial intelligence","score_opus":0.10654706826490809,"score_gpt":0.4400454294587947,"score_spread":0.33349836119388665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117342011","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0072139683,0.6819537,0.035406318,0.21922663,0.024325334,0.0000827143,0.00036993838,0.00076751475,0.03065389],"genre_scores_gemma":[0.073585436,0.6118159,0.07558141,0.11400378,0.040628742,0.0002180655,0.0011733059,0.0004663916,0.08252701],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986432,0.0003640247,0.00011795968,0.00025660422,0.00045631692,0.00016190542],"domain_scores_gemma":[0.99774003,0.0008568025,0.00018225859,0.00016589611,0.0006297643,0.0004252951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002579374,0.0011085543,0.0011341873,0.0017441366,0.000660914,0.0034468884,0.0010040518,0.0042580566,0.009863567],"category_scores_gemma":[0.0023972255,0.00047816001,0.00096439087,0.0009958219,0.002930628,0.0070672245,0.001381318,0.008110231,0.0058202245],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005694414,0.00029323137,0.0021540788,0.0023520181,0.00017195895,0.0014747597,0.0005171009,0.0006697341,0.076590426,0.1187658,0.17885569,0.61758584],"study_design_scores_gemma":[0.00003378532,0.00025011844,0.00055612635,0.00031133235,0.0000357818,0.001766359,0.00015681687,0.00039987953,0.005548364,0.017861404,0.973041,0.000039057108],"about_ca_topic_score_codex":0.0005300503,"about_ca_topic_score_gemma":0.0008592624,"teacher_disagreement_score":0.009863567,"about_ca_system_score_codex":0.0015417235,"about_ca_system_score_gemma":0.0010434919,"threshold_uncertainty_score":0.032996893},"labels":[],"label_agreement":null},{"id":"W2117455630","doi":"10.1128/jcm.01513-06","title":"Temperate Bacteriophages Affect Pulsed-Field Gel Electrophoresis Patterns of <i>Campylobacter jejuni</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Bacteriophage; Pulsed-field gel electrophoresis; Biology; Campylobacter jejuni; Gel electrophoresis; Microbiology; Outbreak; Southern blot; Campylobacter; Gene; Virology; Genetics; Molecular biology; Genotype; Bacteria; Escherichia coli","score_opus":0.02143917241722935,"score_gpt":0.2927823765517021,"score_spread":0.2713432041344727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117455630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989843,0.00020248913,0.00032163935,0.000029012046,0.00000404624,0.0000049772975,0.00006560613,0.00001633156,0.00037152847],"genre_scores_gemma":[0.9983734,0.00015701672,0.0006801178,0.000032181182,0.0000047249237,0.0000047598883,0.00026689764,0.000014885586,0.00046599403],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997986,0.000030548068,0.000012493935,0.000037157028,0.00005111109,0.00007005539],"domain_scores_gemma":[0.999549,0.00011140377,0.00012629868,0.000024948833,0.00009526134,0.000093109215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015528635,0.00034579873,0.00014768123,0.0003624356,0.00018714926,0.0003895164,0.00013869404,0.00027936138,0.00096819585],"category_scores_gemma":[0.0006963325,0.00020829657,0.00014821166,0.00021397811,0.0002866627,0.0001689249,0.0001516132,0.0002899783,0.0002525291],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121571196,0.000014679402,0.0052684997,0.000030760944,0.000004443133,0.0000984107,0.00011423083,0.000015985435,0.9931091,0.000016212274,0.000038276,0.0011677141],"study_design_scores_gemma":[0.00002959597,0.00043254282,0.48529527,0.000027723385,0.000074445714,0.0022374166,0.0006949389,0.00042714982,0.5086974,0.00009032319,0.0019674615,0.00002574461],"about_ca_topic_score_codex":0.0056528226,"about_ca_topic_score_gemma":0.008557161,"teacher_disagreement_score":0.0056528226,"about_ca_system_score_codex":0.0004283697,"about_ca_system_score_gemma":0.00025545247,"threshold_uncertainty_score":0.011239827},"labels":[],"label_agreement":null},{"id":"W2117478915","doi":"10.1128/jcm.42.2.636-638.2004","title":"Evaluation of the RealArt Malaria LC Real-Time PCR Assay for Malaria Diagnosis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Toronto General Hospital; University Health Network","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Malaria; Virology; Protozoal disease; Plasmodium falciparum; Medicine; Real-time polymerase chain reaction; Biology; Immunology; Genetics; Gene","score_opus":0.07948846179531767,"score_gpt":0.4168232108739053,"score_spread":0.3373347490785876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117478915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.970066,0.0032658973,0.024061313,0.00021466812,0.00006386966,0.00026429648,0.000320552,0.000224836,0.0015185964],"genre_scores_gemma":[0.96125996,0.0005822059,0.036474306,0.00010778378,0.000028571847,0.00018412701,0.00050381786,0.000027722748,0.0008315381],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99595875,0.0019594547,0.00021793084,0.0004650415,0.0012410843,0.00015776674],"domain_scores_gemma":[0.99656916,0.0017643428,0.00040063166,0.00019735756,0.0009206834,0.00014788673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033762257,0.00048033614,0.00045687368,0.00058354315,0.00015234997,0.0005965943,0.0005125737,0.00053425756,0.0008511344],"category_scores_gemma":[0.0068062614,0.00022140141,0.00020686994,0.0002937501,0.00035535035,0.00045850384,0.00014318434,0.00031661495,0.00063576933],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044270023,0.00082494563,0.18277223,0.00062459323,0.00018660945,0.0007299669,0.0007088811,0.0024873123,0.68980885,0.00032145952,0.0009608667,0.11614725],"study_design_scores_gemma":[0.00030151432,0.017031949,0.24274658,0.00012735507,0.00040703907,0.009391533,0.0004491882,0.060494546,0.66005903,0.00025517348,0.008583685,0.00015232817],"about_ca_topic_score_codex":0.00058347447,"about_ca_topic_score_gemma":0.0007783155,"teacher_disagreement_score":0.0033762257,"about_ca_system_score_codex":0.00034963118,"about_ca_system_score_gemma":0.00040205897,"threshold_uncertainty_score":0.017855406},"labels":[],"label_agreement":null},{"id":"W2117513992","doi":"10.1128/jcm.40.12.4528-4530.2002","title":"Evaluation of the Makromed Dipstick Assay versus PCR for Diagnosis of <i>Plasmodium falciparum</i> Malaria in Returned Travelers","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Canada Research Chairs","keywords":"Dipstick; Malaria; Plasmodium falciparum; Diagnosis of malaria; Rapid diagnostic test; Parasitemia; Gold standard (test); Virology; Diagnostic test; Immunology; Medicine; Biology; Antigen; Internal medicine; Pediatrics; Urine","score_opus":0.16328061845832637,"score_gpt":0.40894378965344635,"score_spread":0.24566317119512,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117513992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99836594,0.0007113759,0.0005212368,0.00003661231,0.000023023655,0.000021359803,0.000036158686,0.000012799265,0.0002716315],"genre_scores_gemma":[0.99869114,0.00013421949,0.0009765458,0.000030885793,0.000012195738,0.000012587721,0.000052757867,0.0000034461327,0.00008637272],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99669766,0.0018608662,0.0002681093,0.0003880733,0.0006365199,0.00014874137],"domain_scores_gemma":[0.9896806,0.0077603604,0.0011097819,0.00023379212,0.00083003176,0.0003853742],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034148605,0.0004618937,0.00043534845,0.0005914614,0.00020828606,0.00051717064,0.00036688132,0.00064327195,0.00055530237],"category_scores_gemma":[0.016122522,0.00026228285,0.00023229778,0.0002661897,0.0006306229,0.00057297293,0.00025751465,0.00037992888,0.00021303355],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.04329021,0.0014880924,0.7572106,0.00096477696,0.00040771364,0.0009393367,0.0016908867,0.0016867283,0.104497895,0.00021481863,0.0006163776,0.086992554],"study_design_scores_gemma":[0.00086514396,0.06382084,0.82054996,0.00011043579,0.0004248875,0.0058090277,0.0010137464,0.012034818,0.09375593,0.00018220916,0.00130569,0.00012735264],"about_ca_topic_score_codex":0.00070215605,"about_ca_topic_score_gemma":0.0008040334,"teacher_disagreement_score":0.0034148605,"about_ca_system_score_codex":0.0003572607,"about_ca_system_score_gemma":0.00019445256,"threshold_uncertainty_score":0.01805967},"labels":[],"label_agreement":null},{"id":"W2117569238","doi":"10.1128/jcm.42.12.5715-5721.2004","title":"Phenotypic and Molecular Detection of CTX-M-β-Lactamases Produced by <i>Escherichia coli</i> and <i>Klebsiella</i> spp","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":299,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services; University of Calgary","keywords":"Cefotaxime; Ceftazidime; Cefpodoxime; Microbiology; Biology; Escherichia coli; Enterobacteriaceae; Klebsiella; Primer (cosmetics); Gene; Bacteria; Antibiotics; Genetics; Chemistry","score_opus":0.009737704951567956,"score_gpt":0.27756407826077106,"score_spread":0.2678263733092031,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117569238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979956,0.00033231257,0.00068074936,0.000039110695,0.000006316174,0.00002901276,0.00018764526,0.000009541142,0.0007197706],"genre_scores_gemma":[0.9952779,0.00045007773,0.0029588982,0.000052779313,0.00000958956,0.00003637092,0.00065575377,0.0000030265153,0.0005556004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992828,0.00013658508,0.00008974415,0.00016406082,0.00022835923,0.000098587334],"domain_scores_gemma":[0.99923444,0.00017581349,0.0002699495,0.000044102555,0.00018737519,0.0000883706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004225931,0.0002732815,0.00017284922,0.0007513557,0.00017493221,0.00038025863,0.00025009707,0.00035121338,0.00046377364],"category_scores_gemma":[0.0012915707,0.0001890417,0.00013020677,0.0004992623,0.00026292028,0.00019980474,0.00020321025,0.00024971133,0.00017134185],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036533907,0.0002568918,0.45547608,0.00015409164,0.000047543774,0.00039169827,0.0004213867,0.0002728088,0.52135426,0.000064846085,0.00019099972,0.021004021],"study_design_scores_gemma":[0.000016081298,0.0007284993,0.89694643,0.00002337431,0.0000540109,0.0016629738,0.00044093173,0.00052450225,0.098518245,0.000015630738,0.0010580702,0.000011207557],"about_ca_topic_score_codex":0.005648664,"about_ca_topic_score_gemma":0.008236242,"teacher_disagreement_score":0.005648664,"about_ca_system_score_codex":0.00042381565,"about_ca_system_score_gemma":0.00030458195,"threshold_uncertainty_score":0.011231601},"labels":[],"label_agreement":null},{"id":"W2117649204","doi":"10.1128/jcm.02982-14","title":"Characterization of Enterovirus Activity, Including That of Enterovirus D68, in Pediatric Patients in Alberta, Canada, in 2014","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Office of the Chief Medical Examiner; Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"Alberta Health Services","keywords":"Enterovirus; Enterovirus Infections; Virology; Medicine; Pediatrics; Virus","score_opus":0.08551917924383302,"score_gpt":0.3817342169561373,"score_spread":0.2962150377123043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117649204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99311334,0.0013565117,0.00017507026,0.00026399,0.000016923763,0.00007435464,0.0027282902,0.000012873655,0.002258628],"genre_scores_gemma":[0.9961772,0.0010479272,0.00030433314,0.00023392274,0.000025768915,0.000018364019,0.0017556358,0.0000043713067,0.00043232954],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99889994,0.00005494596,0.00007814997,0.00012314571,0.00040224535,0.00044155645],"domain_scores_gemma":[0.9989261,0.00006846667,0.00024402872,0.000021892445,0.0004085543,0.00033100438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048082284,0.00048175716,0.00038210498,0.0024194506,0.0019088619,0.001578561,0.0015013595,0.0005496931,0.0007722526],"category_scores_gemma":[0.0010518172,0.0003610949,0.00028229688,0.004125847,0.0010302122,0.00038800007,0.00092275755,0.0009746003,0.0001790657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043307282,0.00002165076,0.9961318,0.00003036338,0.000010735314,0.00035954942,0.00046453337,0.000068171954,0.00035749676,0.00005883227,0.00039322244,0.002060299],"study_design_scores_gemma":[0.0000023245182,0.000053406744,0.99566406,0.000042007916,0.000012339956,0.00052968116,0.0027433818,0.000096454285,0.00013819047,0.000015438512,0.0006961494,0.0000066436132],"about_ca_topic_score_codex":0.9261923,"about_ca_topic_score_gemma":0.95883405,"teacher_disagreement_score":0.07380772,"about_ca_system_score_codex":0.0128057785,"about_ca_system_score_gemma":0.016940646,"threshold_uncertainty_score":0.1484847},"labels":[],"label_agreement":null},{"id":"W2117877968","doi":"10.1128/jcm.02512-06","title":"Monitoring of Hepatitis C Virus Quasispecies in Chronic Infection by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Mutation Detection","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Viral quasispecies; Mass spectrometry; Hypervariable region; Virology; clone (Java method); Biology; Virus; Hepatitis C virus; Antibody; Chemistry; Chromatography; Genetics; DNA","score_opus":0.03314841153247488,"score_gpt":0.3905503542559134,"score_spread":0.3574019427234385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117877968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641585,0.00046313577,0.002625402,0.00003351928,0.000007284786,0.000021436552,0.0001296177,0.00003609797,0.00026758548],"genre_scores_gemma":[0.99376243,0.00018249432,0.005638733,0.000030110861,0.000008173462,0.000025673791,0.00008529234,0.000004726654,0.00026243093],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99979955,0.00004849967,0.000014340646,0.000049020335,0.000062012325,0.000026639089],"domain_scores_gemma":[0.99946135,0.00017762082,0.00015175786,0.00002678754,0.00010904148,0.000073416944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050572667,0.00029707092,0.00029207094,0.0007503991,0.0004012505,0.00028603806,0.00022070901,0.00041683784,0.00048311424],"category_scores_gemma":[0.0007702689,0.00013722922,0.000122894,0.00035149118,0.00030410144,0.00022017641,0.0001737675,0.00031124664,0.00016790631],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045886292,0.00007976353,0.05450023,0.000044482815,0.000025520298,0.00037619044,0.00025729474,0.00016058185,0.9369089,0.00009094081,0.000049955503,0.007047412],"study_design_scores_gemma":[0.00006163587,0.0028779367,0.42335153,0.000021735907,0.00011654022,0.0082487585,0.0003511832,0.009476985,0.55375063,0.00038791355,0.0012949104,0.000060257702],"about_ca_topic_score_codex":0.0007250544,"about_ca_topic_score_gemma":0.0008595216,"teacher_disagreement_score":0.0007503991,"about_ca_system_score_codex":0.00016879303,"about_ca_system_score_gemma":0.00012642417,"threshold_uncertainty_score":0.0026745796},"labels":[],"label_agreement":null},{"id":"W2117917396","doi":"10.1128/jcm.00092-13","title":"Sensitive Cell-Based Assay for Determination of Human Immunodeficiency Virus Type 1 Coreceptor Tropism","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Center for AIDS Research, University of Washington; ViiV Healthcare; National Institute of Allergy and Infectious Diseases; Pfizer; McMaster University; School of Medicine, New York University; National Institutes of Health; Case Western Reserve University","keywords":"Biology; Virology; Population; Tropism; Genotype; Virus; Genetics; Gene; Medicine","score_opus":0.043987483738689936,"score_gpt":0.3701567106035108,"score_spread":0.32616922686482086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117917396","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.65487415,0.003093819,0.3277206,0.00023143165,0.00021758425,0.0010376534,0.0051757786,0.001602394,0.0060466276],"genre_scores_gemma":[0.7202264,0.0028170622,0.25948432,0.00046376567,0.00009683786,0.0012466316,0.008071158,0.00017668658,0.007417134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99700385,0.0010912373,0.00018183514,0.000536023,0.001025587,0.00016143135],"domain_scores_gemma":[0.9988135,0.00052741717,0.00016386123,0.00020733882,0.00020427915,0.000083567065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015074456,0.0009854523,0.000858667,0.00087079173,0.00035057843,0.0006543863,0.0007249539,0.0009363769,0.0016949058],"category_scores_gemma":[0.0011560891,0.00031953762,0.00055756327,0.00061975623,0.00047904713,0.0004313401,0.0006806795,0.0014136584,0.0014047467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008390961,0.000100829704,0.0024901757,0.00006451009,0.000023529854,0.000044597346,0.00006641266,0.0001688332,0.9915543,0.0001953325,0.00019440921,0.005013072],"study_design_scores_gemma":[0.00002069294,0.0008540972,0.008118072,0.000018145487,0.000056379096,0.0006582166,0.000064859894,0.004707729,0.9821454,0.0001660304,0.0031574052,0.000032940785],"about_ca_topic_score_codex":0.00029403198,"about_ca_topic_score_gemma":0.0004414149,"teacher_disagreement_score":0.0016949058,"about_ca_system_score_codex":0.00020768182,"about_ca_system_score_gemma":0.00025896955,"threshold_uncertainty_score":0.00797224},"labels":[],"label_agreement":null},{"id":"W2117964347","doi":"10.1128/jcm.42.9.4365-4369.2004","title":"Differing Patterns of Liver Disease Progression and Hepatitis C Virus (HCV) Quasispecies Evolution in Children Vertically Coinfected with HCV and Human Immunodeficiency Virus Type 1","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Viral quasispecies; Hepatitis C virus; Virology; Virus; Liver disease; Hepacivirus; Hepatitis C; Viral disease; Flaviviridae; Biology; Coinfection; Medicine; Immunology; Internal medicine","score_opus":0.025585254679573212,"score_gpt":0.36070939323914974,"score_spread":0.3351241385595765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117964347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9998179,0.000057970617,0.000022681364,0.0000055174405,5.9680946e-7,0.0000019254996,0.000021400725,0.0000010036074,0.00007101279],"genre_scores_gemma":[0.99971503,0.00007019431,0.00007267436,0.000009395325,0.0000020684763,0.000003220042,0.00006841751,0.0000015602305,0.00005745425],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996817,0.00006645801,0.0000271757,0.000051570125,0.000043634467,0.00012946255],"domain_scores_gemma":[0.9991291,0.00021233372,0.00031248562,0.000036365047,0.00009215817,0.00021750054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022990708,0.0002415396,0.00027211258,0.0007548839,0.00046388854,0.0003712327,0.00013117856,0.00035472368,0.00075013307],"category_scores_gemma":[0.0016029167,0.00021810102,0.0001876401,0.00041085677,0.00056045456,0.00038143844,0.0003259901,0.00042667272,0.00013538064],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039387372,0.000045020202,0.98708063,0.000019182202,0.00001692833,0.0013066588,0.00076986407,0.000066611414,0.0076967543,0.000051521634,0.000040438408,0.002512507],"study_design_scores_gemma":[0.000011750359,0.00058797846,0.9927505,0.0000055405394,0.000016099482,0.004100168,0.0006856869,0.00013045351,0.0014802604,0.000022246182,0.00020227456,0.000007102526],"about_ca_topic_score_codex":0.0041764686,"about_ca_topic_score_gemma":0.004528451,"teacher_disagreement_score":0.0041764686,"about_ca_system_score_codex":0.00037292234,"about_ca_system_score_gemma":0.0002650483,"threshold_uncertainty_score":0.008304298},"labels":[],"label_agreement":null},{"id":"W2118124254","doi":"10.1128/jcm.44.5.1635-1644.2006","title":"Comparison of DNA Fingerprinting Methods for Use in Investigation of Type E Botulism Outbreaks in the Canadian Arctic","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Botulinum Toxin and Related Neurological Disorders","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"Health Canada","keywords":"Pulsed-field gel electrophoresis; Ribotyping; Biology; Microbiology; Typing; DNA profiling; RAPD; Outbreak; Serotype; Clostridium botulinum; Virology; Polymerase chain reaction; Genetics; Genotype; DNA; Toxin; Genetic diversity; Medicine; Gene; Population","score_opus":0.15078664387646076,"score_gpt":0.456932768160067,"score_spread":0.3061461242836062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118124254","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9710651,0.0064543295,0.0164013,0.00024304271,0.00006418029,0.00027825948,0.0011801259,0.00028515502,0.004028533],"genre_scores_gemma":[0.87825114,0.0065939627,0.11099037,0.0001600623,0.00003655004,0.00023409037,0.0020902466,0.00007788489,0.001565712],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99611604,0.00082100445,0.00025897272,0.00042823536,0.0021216075,0.00025406692],"domain_scores_gemma":[0.99320966,0.0019918976,0.0008285832,0.00028450784,0.003341927,0.00034340724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003041533,0.00088751025,0.00045060436,0.003809212,0.0011981267,0.0010547151,0.0010984265,0.00052780204,0.0005503621],"category_scores_gemma":[0.008944546,0.00047081002,0.0003407081,0.0033490623,0.0006019076,0.0003747917,0.0005229244,0.0003150594,0.00018775607],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032538786,0.00045185996,0.33309054,0.0014834544,0.0005990669,0.00049604604,0.0034615283,0.0051602577,0.25072253,0.0006484182,0.0012862628,0.3993462],"study_design_scores_gemma":[0.00013881942,0.0013788402,0.8844576,0.00025141047,0.0005025096,0.0016894991,0.0016876577,0.009380585,0.089633435,0.00022462328,0.010453342,0.000201645],"about_ca_topic_score_codex":0.4709907,"about_ca_topic_score_gemma":0.6289788,"teacher_disagreement_score":0.52900934,"about_ca_system_score_codex":0.0035697306,"about_ca_system_score_gemma":0.004734807,"threshold_uncertainty_score":0.9364984},"labels":[],"label_agreement":null},{"id":"W2118267496","doi":"10.1128/jcm.39.7.2681-2682.2001","title":"Efficacy of New Low-Cost Filtration Device for Recovering <i>Schistosoma haematobium</i> Eggs from Urine","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"","keywords":"Schistosoma haematobium; Schistosomiasis; Urine; Schistosoma; Filtration (mathematics); Urinary system; Biology; Helminthiasis; Trematoda; Immunology; Schistosoma mansoni; Helminths; Mathematics; Endocrinology; Statistics","score_opus":0.06448526256071355,"score_gpt":0.40251036523062156,"score_spread":0.33802510266990804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118267496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99358904,0.003490655,0.0019554917,0.00013914042,0.000108712426,0.00008810385,0.000107215994,0.00004761539,0.00047403143],"genre_scores_gemma":[0.9896346,0.001826477,0.006799864,0.0001592127,0.000074726464,0.000053183197,0.00054921047,0.00000946313,0.0008933549],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990074,0.00033754684,0.0000874825,0.00012335926,0.00036120258,0.00008294581],"domain_scores_gemma":[0.99912554,0.00043354149,0.0001248696,0.000058824677,0.00014605821,0.00011125499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013750985,0.00035430258,0.0005086547,0.00043813977,0.00023558755,0.0005381551,0.0004556917,0.0007465599,0.0008878925],"category_scores_gemma":[0.0016312684,0.00024746705,0.00043102133,0.00013812205,0.00035030098,0.00043778363,0.00022396875,0.00031398085,0.0002608116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044786497,0.0017720542,0.008441828,0.00069270696,0.00011090723,0.00016886837,0.00014182425,0.00019610251,0.9575576,0.00009938247,0.00039719074,0.025942795],"study_design_scores_gemma":[0.0005676956,0.03433704,0.050110597,0.00012092275,0.00041218416,0.0017748332,0.00014430234,0.002467371,0.90584594,0.00006968236,0.004068044,0.000081455044],"about_ca_topic_score_codex":0.00055199413,"about_ca_topic_score_gemma":0.0005511761,"teacher_disagreement_score":0.0013750985,"about_ca_system_score_codex":0.0001734836,"about_ca_system_score_gemma":0.00021067224,"threshold_uncertainty_score":0.007272303},"labels":[],"label_agreement":null},{"id":"W2118351170","doi":"10.1128/jcm.40.6.2288-2290.2002","title":"Development and Evaluation of a PCR Method for Detection of the <i>Clostridium difficile</i> Toxin B Gene in Stool Specimens","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Clostridium difficile; Microbiology; Toxin; Clostridiaceae; Antibiotic-associated diarrhea; Clostridium difficile toxin B; Diarrhea; Clostridium difficile toxin A; Biology; Cytotoxicity; Polymerase chain reaction; Antibiotics; Clostridium; Gene; Bacteria; Medicine; Gastroenterology; In vitro","score_opus":0.13681296576619706,"score_gpt":0.41326384986180553,"score_spread":0.2764508840956085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118351170","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.60377425,0.0052647805,0.38406196,0.0005360451,0.00040638554,0.0016978162,0.0005802841,0.0009059908,0.0027724693],"genre_scores_gemma":[0.541266,0.0024296727,0.45086277,0.00037321428,0.00012379284,0.0010979571,0.0013585906,0.00012979787,0.0023581549],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966653,0.0008809012,0.00022446447,0.0006884247,0.0013708093,0.0001701056],"domain_scores_gemma":[0.99666554,0.0012325692,0.00040949648,0.000252931,0.0011837664,0.00025564636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001898946,0.00083973317,0.0006980757,0.0013218486,0.00031653407,0.0007478181,0.0008685084,0.0011140179,0.0007205818],"category_scores_gemma":[0.00465204,0.00069755164,0.00046988513,0.00037605327,0.0007036079,0.00051029975,0.00041931242,0.0008329584,0.0010289797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022393769,0.0002680981,0.0030608654,0.00013057375,0.00001863269,0.00011064352,0.000051977942,0.000292717,0.974794,0.00009259612,0.00009720385,0.020858837],"study_design_scores_gemma":[0.00026351426,0.00727212,0.016595263,0.00007542025,0.00018247914,0.0038955028,0.0001203744,0.010651389,0.9555168,0.00021026409,0.005134948,0.00008197368],"about_ca_topic_score_codex":0.0006761662,"about_ca_topic_score_gemma":0.0007146758,"teacher_disagreement_score":0.001898946,"about_ca_system_score_codex":0.00035515017,"about_ca_system_score_gemma":0.0006904858,"threshold_uncertainty_score":0.010042727},"labels":[],"label_agreement":null},{"id":"W2118665460","doi":"10.1128/jcm.01637-14","title":"Comparative Evaluation of Two Commercial Multiplex Panels for Detection of Gastrointestinal Pathogens by Use of Clinical Stool Specimens","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":304,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Multiplex; Microbiology; Biology; Virology; Multiplex polymerase chain reaction; Medicine; Polymerase chain reaction; Bioinformatics; Genetics","score_opus":0.39326873218427283,"score_gpt":0.5321747341936599,"score_spread":0.13890600200938708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118665460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9801853,0.0016882663,0.01610889,0.00009459975,0.00010280611,0.00028675012,0.0004824939,0.000101815865,0.0009490355],"genre_scores_gemma":[0.9537323,0.0008477045,0.04268045,0.00020773415,0.00006832468,0.00041492487,0.0014034096,0.000029320268,0.0006157584],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99268484,0.0030928524,0.00058563624,0.0012486931,0.002010478,0.00037752313],"domain_scores_gemma":[0.9952754,0.0022091055,0.0008673414,0.0003888252,0.0010628637,0.00019649156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005080459,0.0012002992,0.00052556477,0.00090575585,0.00030960146,0.0011740638,0.0008001693,0.00075266324,0.0007652252],"category_scores_gemma":[0.0073263324,0.00065065804,0.0004911646,0.0008656675,0.0004712357,0.0006198623,0.000633336,0.0005532783,0.0002973486],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076797837,0.0012340116,0.055539615,0.00064031983,0.00041066675,0.00014129197,0.0006514783,0.0018643027,0.89060175,0.0002493867,0.00043923693,0.04054823],"study_design_scores_gemma":[0.00029196142,0.016674764,0.10750266,0.00011321593,0.00064463506,0.0012252042,0.00041537813,0.014102412,0.85539466,0.00014670218,0.0033938522,0.00009449302],"about_ca_topic_score_codex":0.0010057177,"about_ca_topic_score_gemma":0.0017800056,"teacher_disagreement_score":0.005080459,"about_ca_system_score_codex":0.00054618745,"about_ca_system_score_gemma":0.00031731662,"threshold_uncertainty_score":0.026868343},"labels":[],"label_agreement":null},{"id":"W2118806681","doi":"10.1128/jcm.41.3.1069-1072.2003","title":"Detection and Identification of <i>Bartonella</i> Species Pathogenic for Humans by PCR Amplification Targeting the Riboflavin Synthase Gene ( <i>ribC</i> )","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bartonella species infections research","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Fastidious organism; Bartonella; Biology; Amplicon; Microbiology; Polymerase chain reaction; Virology; Gene; Molecular biology; Genetics; Bacteria","score_opus":0.03555423186931642,"score_gpt":0.3306050163393365,"score_spread":0.29505078447002003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118806681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96707803,0.0022895208,0.027058704,0.00023445293,0.00005281768,0.0001919317,0.0005246806,0.0002325612,0.0023372748],"genre_scores_gemma":[0.95956147,0.0015105767,0.03678994,0.00012647668,0.000029712215,0.00006944933,0.0008523538,0.00002040111,0.001039565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995987,0.000095193514,0.000046502315,0.00011655626,0.00007923266,0.000063817024],"domain_scores_gemma":[0.99941933,0.00023420335,0.0001689568,0.00004733301,0.00008332354,0.000046935376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034975837,0.00037984052,0.0002098771,0.0005115499,0.000114527604,0.00032648776,0.00017581043,0.00050048396,0.0007208995],"category_scores_gemma":[0.0010286851,0.000247132,0.00020124119,0.00017574022,0.0003359032,0.00021269562,0.00014519192,0.00033297006,0.00040394123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012865796,0.000032918742,0.01079221,0.00011112068,0.000008346722,0.00013359365,0.000097958036,0.000049243667,0.9804694,0.000069998234,0.00008033178,0.008026322],"study_design_scores_gemma":[0.00005288171,0.0015493925,0.081425324,0.00008473747,0.00012816238,0.0048417062,0.0002736982,0.0013425789,0.9061697,0.00017104059,0.003932887,0.000027885337],"about_ca_topic_score_codex":0.0007563373,"about_ca_topic_score_gemma":0.0007054527,"teacher_disagreement_score":0.0007563373,"about_ca_system_score_codex":0.000115650386,"about_ca_system_score_gemma":0.0001279368,"threshold_uncertainty_score":0.002411604},"labels":[],"label_agreement":null},{"id":"W2118915943","doi":"10.1128/jcm.01049-06","title":"FDJS03 Isolates Causing an Outbreak of Aseptic Meningitis in China That Evolved from a Distinct Echovirus 30 Lineage Imported from Countries of the Commonwealth of Independent States","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Government of Jiangsu Province","keywords":"Echovirus; Phylogenetic tree; Biology; Outbreak; Aseptic meningitis; Virology; Genome; Lineage (genetic); Enterovirus; Genetics; Serotype; Phylogenetics; Gene; Strain (injury); Virus","score_opus":0.041057749954470694,"score_gpt":0.3712112894875308,"score_spread":0.3301535395330601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118915943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9999002,0.000009542155,0.000015118058,0.0000027050287,6.6289385e-7,0.000003092603,0.000019903457,4.710301e-7,0.000048170805],"genre_scores_gemma":[0.99930274,0.000041473002,0.00021434756,0.000027413393,0.0000022722306,0.0000064919186,0.00032363262,0.0000012113687,0.00008038203],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99980336,0.000020790592,0.000021310396,0.000037747417,0.000039574163,0.000077274046],"domain_scores_gemma":[0.99977547,0.000037576516,0.00006431647,0.000019884621,0.000037998463,0.000064654705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029128088,0.0003682335,0.00024649405,0.00045965082,0.0005774466,0.00036229775,0.00017675238,0.00033434236,0.0002422587],"category_scores_gemma":[0.00047360212,0.00018367106,0.00032888452,0.00051199406,0.0002508008,0.00022022324,0.00037358454,0.0002748679,0.00006384704],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008443994,0.00029687857,0.81079173,0.000069181704,0.00010179288,0.004301745,0.0015036698,0.0004985864,0.17543983,0.000111708294,0.0001394931,0.0059009637],"study_design_scores_gemma":[0.000047268793,0.0003980494,0.98873746,0.000009195006,0.0000362232,0.0021170094,0.00095238583,0.0006976541,0.006616472,0.0000479438,0.00032963222,0.000010593403],"about_ca_topic_score_codex":0.016631005,"about_ca_topic_score_gemma":0.019283663,"teacher_disagreement_score":0.016631005,"about_ca_system_score_codex":0.0008377395,"about_ca_system_score_gemma":0.00057965535,"threshold_uncertainty_score":0.03306842},"labels":[],"label_agreement":null},{"id":"W2118987296","doi":"10.1128/jcm.41.1.27-33.2003","title":"Subtyping of <i>Salmonella enterica</i> Serotype Enteritidis Strains by Manual and Automated <i>Pst</i> I- <i>Sph</i> I Ribotyping","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Subtyping; Ribotyping; Serotype; Salmonella enterica; Pulsed-field gel electrophoresis; Microbiology; Typing; Phage typing; Biology; Salmonella enteritidis; Virology; Outbreak; Salmonella; Polymerase chain reaction; Genetics; Bacteria; Genotype; Gene; Computer science","score_opus":0.0170669403224802,"score_gpt":0.32171022031673524,"score_spread":0.30464327999425506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118987296","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9844263,0.00024379541,0.013486716,0.000019232144,0.000016636068,0.00014366984,0.00045725482,0.00010272165,0.0011035948],"genre_scores_gemma":[0.944807,0.00030087127,0.051935617,0.00005095878,0.000016565207,0.00019381185,0.0016563708,0.000049908092,0.0009889454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974745,0.00072720175,0.0002818198,0.0006333334,0.0006805567,0.00020265239],"domain_scores_gemma":[0.99822253,0.00052241125,0.000610942,0.00027687202,0.00029491796,0.00007233985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093706284,0.00056796387,0.0004896636,0.0016895593,0.00018230922,0.00051468646,0.0004958927,0.00049370143,0.0004965265],"category_scores_gemma":[0.0020552247,0.0002392688,0.0005598363,0.0010453361,0.00039056328,0.00031923037,0.00059726334,0.0003278705,0.00036066154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013419647,0.00040994663,0.10244733,0.00030027857,0.00010818025,0.00022839685,0.0005550631,0.0012597338,0.83072305,0.00012458574,0.00018566832,0.062315855],"study_design_scores_gemma":[0.00004781202,0.0040149544,0.42653456,0.000046289853,0.00025216342,0.0012776278,0.0005833752,0.007871369,0.5567878,0.0001360345,0.0023578505,0.000090129135],"about_ca_topic_score_codex":0.0018986118,"about_ca_topic_score_gemma":0.0019242385,"teacher_disagreement_score":0.0018986118,"about_ca_system_score_codex":0.00022491849,"about_ca_system_score_gemma":0.00026647636,"threshold_uncertainty_score":0.004955709},"labels":[],"label_agreement":null},{"id":"W2119092072","doi":"10.1128/jcm.01332-09","title":"Clinical Application of Real-Time PCR to Screening Critically Ill and Emergency-Care Surgical Patients for Methicillin-Resistant <i>Staphylococcus aureus</i> : a Quantitative Analytical Study","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Thomas Hospital","funders":"","keywords":"Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Odds ratio; Medicine; Staphylococcal infections; Confidence interval; Internal medicine; Microbiology; Micrococcaceae; Meticillin; Real-time polymerase chain reaction; Biology; Bacteria","score_opus":0.05570399704735399,"score_gpt":0.4315245133132083,"score_spread":0.37582051626585433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119092072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966917,0.0007509147,0.0017962275,0.00006203122,0.000011743721,0.000051983076,0.00007159762,0.000014740734,0.0005490224],"genre_scores_gemma":[0.9980684,0.0001469904,0.0015054458,0.000050978277,0.000019558462,0.00004795799,0.00007799576,0.0000036026474,0.000079147205],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99726593,0.0014820178,0.00016548096,0.00035538722,0.0006019917,0.00012911523],"domain_scores_gemma":[0.9904102,0.006846677,0.0012125578,0.00034302665,0.00083736534,0.00035021166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034703708,0.00045577055,0.00034668186,0.00067110994,0.0001800165,0.00058462704,0.00030011436,0.00063589175,0.00084167696],"category_scores_gemma":[0.014774832,0.00026197793,0.0002689153,0.00048192,0.0007257274,0.0004359357,0.00025651464,0.00045745587,0.0002488621],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056616846,0.0009625826,0.93094796,0.00022515074,0.00015129938,0.00041757873,0.0007041106,0.0008151426,0.01778856,0.000110411806,0.00031867437,0.04189685],"study_design_scores_gemma":[0.00026212732,0.017661493,0.95872915,0.00004895088,0.00016550175,0.0036564784,0.00073433155,0.008706434,0.008370373,0.00022913069,0.0013668612,0.000069084956],"about_ca_topic_score_codex":0.0005031996,"about_ca_topic_score_gemma":0.00029992385,"teacher_disagreement_score":0.0034703708,"about_ca_system_score_codex":0.00033012,"about_ca_system_score_gemma":0.00023825439,"threshold_uncertainty_score":0.018353343},"labels":[],"label_agreement":null},{"id":"W2119129605","doi":"10.1128/jcm.43.7.3427-3430.2005","title":"Development of a Novel Protein Microarray Method for Serotyping <i>Salmonella enterica</i> Strains","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Advanced Biosensing Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"","keywords":"Serotype; Salmonella; Salmonella enterica; Biology; Microbiology; Microarray; Antibody microarray; Virology; Enterobacteriaceae; Antibody; Bacteria; Gene; Escherichia coli; Genetics; Gene expression","score_opus":0.05774595017550749,"score_gpt":0.41055153941198336,"score_spread":0.35280558923647587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119129605","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24527906,0.0021369634,0.7396536,0.0009963895,0.0004674125,0.00059856387,0.0017515428,0.0044034687,0.004712958],"genre_scores_gemma":[0.24454623,0.0012257602,0.7446211,0.00039976827,0.00011675873,0.0009292135,0.0015927743,0.00014534393,0.0064229863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993051,0.000111572626,0.000035615078,0.00020592472,0.00027527535,0.0000664108],"domain_scores_gemma":[0.9995728,0.00013476245,0.00004534683,0.000037314556,0.00013233826,0.000077299796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005664709,0.0006584888,0.00081320346,0.000678334,0.00029676096,0.0005458832,0.0009044235,0.0008201227,0.0016941129],"category_scores_gemma":[0.00066796097,0.0005673903,0.00041693225,0.0002751437,0.00022651881,0.00053486973,0.0005139418,0.0009848975,0.0015021167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003628225,0.000026594807,0.00016488755,0.000042615513,0.000004978394,0.000019187131,0.0000093325225,0.000085458465,0.99274546,0.00011672236,0.00021527818,0.006533148],"study_design_scores_gemma":[0.00002487571,0.00041499097,0.0031409669,0.000019323363,0.000026978158,0.00062719814,0.000024635467,0.011360861,0.9771398,0.00019495853,0.006984891,0.00004035847],"about_ca_topic_score_codex":0.0004945662,"about_ca_topic_score_gemma":0.00093525706,"teacher_disagreement_score":0.0016941129,"about_ca_system_score_codex":0.00038669622,"about_ca_system_score_gemma":0.00033852778,"threshold_uncertainty_score":0.0056673884},"labels":[],"label_agreement":null},{"id":"W2119165547","doi":"10.1128/jcm.38.7.2494-2503.2000","title":"Genetic Characterization of Type 2 Porcine Circovirus (PCV-2) from Pigs with Postweaning Multisystemic Wasting Syndrome in Different Geographic Regions of North America and Development of a Differential PCR-Restriction Fragment Length Polymorphism Assay To Detect and Differentiate between Infections with PCV-1 and PCV-2","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Porcine circovirus; Biology; Genotype; Virology; Restriction fragment length polymorphism; Circovirus; Genetics; Phylogenetic tree; Genome; Genetic variation; Virus; Gene","score_opus":0.027533762933179197,"score_gpt":0.24601526424286901,"score_spread":0.21848150130968982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119165547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992951,0.0000898314,0.00022230094,0.000011616265,0.0000038934368,0.000014278537,0.00014976492,0.000002218589,0.0002109212],"genre_scores_gemma":[0.99677235,0.00017744457,0.00070137467,0.00006848389,0.000009707016,0.00002532684,0.0018296512,0.000004694982,0.00041093942],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997969,0.000019808882,0.000010637275,0.00006336116,0.00004675191,0.000062632964],"domain_scores_gemma":[0.9997867,0.000044428594,0.00004984306,0.0000148861445,0.000044502638,0.00005973745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014267856,0.00037073085,0.00019135812,0.0004929016,0.000383702,0.00032122672,0.00015359974,0.00041154158,0.00028560343],"category_scores_gemma":[0.0003502883,0.00019466515,0.00027520905,0.00035644442,0.00028647747,0.00011089189,0.00015003412,0.00032098487,0.00011770249],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004932553,0.00012644417,0.19078045,0.00006801255,0.00009913771,0.0010614747,0.0009046193,0.00024049664,0.8009453,0.000054225573,0.00010949438,0.0051171887],"study_design_scores_gemma":[0.000022400318,0.0006099575,0.98467004,0.000012126757,0.00004993301,0.0021816085,0.00042367575,0.00035009862,0.010583654,0.00002038911,0.0010662817,0.000009818074],"about_ca_topic_score_codex":0.022009775,"about_ca_topic_score_gemma":0.03659407,"teacher_disagreement_score":0.022009775,"about_ca_system_score_codex":0.0004651346,"about_ca_system_score_gemma":0.00044255165,"threshold_uncertainty_score":0.04376334},"labels":[],"label_agreement":null},{"id":"W2119348057","doi":"10.1128/jcm.02760-12","title":"Reply to “Role of <i>rpsA</i> Gene Sequencing in Diagnosis of Pyrazinamide Resistance”","year":2012,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Drug resistance; Predictive value; Biology; Gene; Tuberculosis; Genetics; Computational biology; Medicine; Internal medicine; Pathology","score_opus":0.07479507695894101,"score_gpt":0.40219683476566953,"score_spread":0.32740175780672853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119348057","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005531845,0.00083588326,0.0001468027,0.9801224,0.017381476,0.000011143697,0.000051213603,0.00003478102,0.0008631762],"genre_scores_gemma":[0.00707127,0.00076075207,0.00039335838,0.9519679,0.037118934,0.000027510301,0.000033397013,0.000026540727,0.0026002761],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99744,0.0009305548,0.00037087422,0.00037032922,0.00054584903,0.000342316],"domain_scores_gemma":[0.99274665,0.003498833,0.00073586195,0.0002045865,0.0019211327,0.00089291047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00291604,0.00095002004,0.001099576,0.0007025714,0.0023358592,0.0018995228,0.0019365988,0.035847835,0.0036684775],"category_scores_gemma":[0.028477397,0.0007789162,0.0008794495,0.0007515584,0.0019755033,0.0028245328,0.001105723,0.025375875,0.0041086082],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007826577,0.000025323081,0.0010508308,0.00006179286,0.0000151186505,0.0045675104,0.00015802644,0.00008332198,0.0002388186,0.0006593657,0.98845273,0.004608928],"study_design_scores_gemma":[0.0001901599,0.00020203592,0.00539587,0.00061725907,0.00008013634,0.02246481,0.0011970073,0.00159227,0.0010853512,0.006930559,0.96000904,0.00023551],"about_ca_topic_score_codex":0.0037454935,"about_ca_topic_score_gemma":0.004888977,"teacher_disagreement_score":0.035847835,"about_ca_system_score_codex":0.0025661648,"about_ca_system_score_gemma":0.0017214426,"threshold_uncertainty_score":0.018618882},"labels":[],"label_agreement":null},{"id":"W2119403138","doi":"10.1128/jcm.38.7.2546-2549.2000","title":"<i>Helicobacter canadensis</i> sp. nov. Isolated from Humans with Diarrhea as an Example of an Emerging Pathogen","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Center for Research Resources; National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute","keywords":"Diarrhea; Pathogen; Microbiology; Biology; Human pathogen; Helicobacter; Virology; Helicobacter pylori; Bacteria; Medicine; Genetics; Internal medicine","score_opus":0.04014772744134062,"score_gpt":0.3257521429381708,"score_spread":0.2856044154968302,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119403138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904997,0.0032560774,0.00078536826,0.0005190009,0.00013122661,0.000070871094,0.00067276217,0.000029276287,0.0040358035],"genre_scores_gemma":[0.9913197,0.0016712038,0.0027493713,0.0006097952,0.00012434667,0.000009007772,0.0018040302,0.000014192814,0.0016983465],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997943,0.000016272588,0.00001477261,0.0000403586,0.00006294327,0.00007134502],"domain_scores_gemma":[0.9997832,0.0000214117,0.000038448583,0.000017801136,0.00006785579,0.00007124938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014856922,0.00026361304,0.00018293803,0.0004892211,0.0007036787,0.00045787863,0.00017331973,0.0003273021,0.0008781792],"category_scores_gemma":[0.0004268403,0.00010590456,0.000119567114,0.00045306497,0.0003858478,0.00013342917,0.0003421166,0.00027555955,0.00032981706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014131336,0.00021698837,0.5913121,0.0014200883,0.00016219767,0.024437394,0.002565378,0.00043783346,0.29728594,0.0005519098,0.0062712026,0.07392575],"study_design_scores_gemma":[0.00007154176,0.0005911911,0.8627907,0.00018082219,0.00023934816,0.034096602,0.0035019333,0.0006080087,0.05208614,0.00028599927,0.04550222,0.00004545867],"about_ca_topic_score_codex":0.101186395,"about_ca_topic_score_gemma":0.14077128,"teacher_disagreement_score":0.101186395,"about_ca_system_score_codex":0.0007152474,"about_ca_system_score_gemma":0.0007339819,"threshold_uncertainty_score":0.20119482},"labels":[],"label_agreement":null},{"id":"W2119590699","doi":"10.1128/jcm.02134-06","title":"Genetic and Antigenic Analysis of Invasive Serogroup Y <i>Neisseria meningitidis</i> Isolates Collected from 1999 to 2003 in Canada","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"National Institutes of Health; Health Canada; European Commission; Wellcome Trust","keywords":"Neisseria meningitidis; Serotype; Biology; Multilocus sequence typing; Serology; Typing; Microbiology; Meningococcal disease; Virology; Neisseriaceae; Antigen; Genotype; Neisseria; Bacteria; Genetics; Antibiotics; Gene; Antibody","score_opus":0.016521610307014933,"score_gpt":0.2882511514881364,"score_spread":0.27172954118112147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119590699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971181,0.0003038042,0.00011717723,0.00006770583,0.000005718444,0.000027105261,0.0011741231,0.000005561227,0.0011806355],"genre_scores_gemma":[0.9961054,0.00047331376,0.00042007945,0.0001222526,0.0000072348485,0.00001061797,0.002144935,0.0000047866515,0.000711379],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99956614,0.000015563939,0.000025118768,0.000056891335,0.0001979841,0.00013822691],"domain_scores_gemma":[0.9989446,0.000042613494,0.00018672778,0.000018835417,0.0005943207,0.0002128796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018584156,0.0002840244,0.00028418069,0.001131689,0.0011623291,0.00071658194,0.00037123714,0.00020317652,0.0005146212],"category_scores_gemma":[0.0008738555,0.00017933258,0.00025278638,0.002259628,0.00039763364,0.000121469355,0.0003157062,0.0003140946,0.00012828129],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019440755,0.000047410602,0.9733863,0.0000637373,0.00004938821,0.0006835475,0.0014465831,0.0002358655,0.01293619,0.00006152044,0.00083988666,0.010055129],"study_design_scores_gemma":[0.000004264174,0.00003546144,0.99679035,0.000013380193,0.000014772817,0.00032675918,0.0006139766,0.00012427798,0.00087972754,0.000005357355,0.0011869535,0.000004697861],"about_ca_topic_score_codex":0.9529588,"about_ca_topic_score_gemma":0.9636715,"teacher_disagreement_score":0.047041178,"about_ca_system_score_codex":0.0069623645,"about_ca_system_score_gemma":0.0075715818,"threshold_uncertainty_score":0.09463638},"labels":[],"label_agreement":null},{"id":"W2119606443","doi":"10.1128/jcm.42.11.4947-4955.2004","title":"New Quadriplex PCR Assay for Detection of Methicillin and Mupirocin Resistance and Simultaneous Discrimination of<i>Staphylococcus aureus</i>from Coagulase-Negative Staphylococci","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":335,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Mupirocin; Microbiology; Staphylococcus aureus; Biology; Methicillin-resistant Staphylococcus aureus; Coagulase; Staphylococcal infections; Staphylococcus; SCCmec; Virology; Bacteria; Genetics","score_opus":0.03807717703209163,"score_gpt":0.3541172173132768,"score_spread":0.31604004028118515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119606443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.54950094,0.005254156,0.4335776,0.00060292386,0.00039023627,0.0013267703,0.0018870493,0.002185678,0.0052745463],"genre_scores_gemma":[0.40317374,0.0026614268,0.57983583,0.000655742,0.00010124442,0.0011255529,0.0039611715,0.00009414939,0.008391133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980732,0.00047268762,0.00016846956,0.0006970558,0.0004752843,0.00011322901],"domain_scores_gemma":[0.9990978,0.0003013712,0.00022679355,0.000068717745,0.00021228961,0.00009311513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010770885,0.0009721715,0.00072601513,0.0012008774,0.00022215398,0.0005602361,0.00071481476,0.00087704073,0.0013511807],"category_scores_gemma":[0.0013371177,0.00052778795,0.00042734985,0.00051704893,0.0004221554,0.0006208787,0.0005028968,0.0007926993,0.0007171418],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029084244,0.00018903507,0.0031161772,0.00016379761,0.000019595698,0.00011547881,0.00007954748,0.00035912415,0.97191566,0.00025836553,0.00027193132,0.023220552],"study_design_scores_gemma":[0.00009320568,0.0023302888,0.014822129,0.00007283663,0.00013085935,0.0034637775,0.00011428819,0.021660816,0.9465054,0.00034314278,0.010391426,0.000071833],"about_ca_topic_score_codex":0.00026673026,"about_ca_topic_score_gemma":0.0005683426,"teacher_disagreement_score":0.0013511807,"about_ca_system_score_codex":0.0004007895,"about_ca_system_score_gemma":0.00044529288,"threshold_uncertainty_score":0.005696237},"labels":[],"label_agreement":null},{"id":"W2119716815","doi":"10.1128/jcm.05053-11","title":"Lack of Association between Clinical Outcome of Clostridium difficile Infections, Strain Type, and Virulence-Associated Phenotypes","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Clostridium difficile; Virulence; Microbiology; Phenotype; Clostridiaceae; Biology; Strain (injury); Clostridium; Bacteria; Genetics; Gene; Antibiotics; Toxin","score_opus":0.2163375404705661,"score_gpt":0.4469642743196672,"score_spread":0.23062673384910107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119716815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99923694,0.00015140334,0.00009180825,0.000032278447,0.000006919725,0.000004903872,0.00005511698,0.000003108399,0.00041762737],"genre_scores_gemma":[0.99974114,0.00002767209,0.000039651142,0.000016315124,0.000010776997,0.000003379407,0.00010835425,0.0000020247137,0.000050724935],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990752,0.00023702461,0.00014956042,0.00018794839,0.00014967084,0.00020059178],"domain_scores_gemma":[0.99433124,0.002042385,0.0013439712,0.00039000608,0.0006548425,0.0012375016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006158022,0.00034169306,0.00046838188,0.00067938044,0.00035592742,0.00051033066,0.00034230715,0.000616116,0.001674228],"category_scores_gemma":[0.0051158015,0.00018098427,0.00032250411,0.0004560463,0.00049159414,0.00040755855,0.00043738235,0.00062407966,0.0003201557],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032792383,0.00004017188,0.99652404,0.000010486319,0.000036127825,0.00046780866,0.000040791576,0.000036267324,0.0015901695,0.000014254554,0.000044027034,0.00086799526],"study_design_scores_gemma":[0.000011675922,0.00045301946,0.9959494,0.0000052313653,0.000028529577,0.0028432286,0.0001504372,0.00020220153,0.00023532078,0.000034764013,0.000080724596,0.0000053997387],"about_ca_topic_score_codex":0.0006372064,"about_ca_topic_score_gemma":0.00059222063,"teacher_disagreement_score":0.001674228,"about_ca_system_score_codex":0.00020356764,"about_ca_system_score_gemma":0.00026230508,"threshold_uncertainty_score":0.0056008697},"labels":[],"label_agreement":null},{"id":"W2119937202","doi":"10.1128/jcm.43.7.3438-3442.2005","title":"Sensitivity and Specificity of a Rapid rRNA Gene Probe Assay for Simultaneous Identification of <i>Staphylococcus aureus</i> and Detection of <i>mecA</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Staphylococcus aureus; Microbiology; Biology; Micrococcaceae; Identification (biology); SCCmec; Staphylococcus; Bacteria; Genetics; Methicillin-resistant Staphylococcus aureus","score_opus":0.025053009382213918,"score_gpt":0.3261375448112729,"score_spread":0.30108453542905894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119937202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85956347,0.008484087,0.11704026,0.0004728956,0.00027011233,0.00045874575,0.000707395,0.0008240023,0.01217908],"genre_scores_gemma":[0.92835724,0.0014625372,0.06698523,0.00023234605,0.000060770253,0.00021721133,0.00055257045,0.000067095476,0.0020649347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99438477,0.0015456382,0.00045475952,0.0011934038,0.0021016728,0.0003198081],"domain_scores_gemma":[0.9931672,0.004093227,0.0005380497,0.00044212188,0.0015186667,0.00024075076],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032370074,0.0008948722,0.00068806164,0.0010399331,0.00021137806,0.0006664517,0.00050351024,0.0014244425,0.0013003666],"category_scores_gemma":[0.005173279,0.000685363,0.0004780762,0.00043712955,0.0008683247,0.00038616298,0.00046961952,0.0007574846,0.0013488682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035131138,0.00008283894,0.0065291272,0.00020682607,0.000023624007,0.00006694263,0.00012985547,0.00043514292,0.975806,0.00015637324,0.00014376215,0.01606824],"study_design_scores_gemma":[0.00006643421,0.0033266859,0.0378139,0.00009939115,0.0001644049,0.0035572166,0.00014706035,0.0076224385,0.94223446,0.00029703323,0.004597642,0.0000732376],"about_ca_topic_score_codex":0.0009691992,"about_ca_topic_score_gemma":0.001310758,"teacher_disagreement_score":0.0032370074,"about_ca_system_score_codex":0.00043457004,"about_ca_system_score_gemma":0.00052213576,"threshold_uncertainty_score":0.01711917},"labels":[],"label_agreement":null},{"id":"W2119954264","doi":"10.1128/jcm.01439-12","title":"Standardized Methods and Quality Control Limits for Agar and Broth Microdilution Susceptibility Testing of Mycoplasma pneumoniae, Mycoplasma hominis, and Ureaplasma urealyticum","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Pfizer","keywords":"Ureaplasma urealyticum; Mycoplasma hominis; Broth microdilution; Microbiology; Mycoplasmataceae; Ureaplasma; Mycoplasma; Mycoplasma pneumoniae; Biology; Agar; Mollicutes; Medicine; Antibiotics; Bacteria; Minimum inhibitory concentration; Internal medicine; Pneumonia","score_opus":0.1151699973721247,"score_gpt":0.4649987640286372,"score_spread":0.3498287666565125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119954264","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10802596,0.005380604,0.8293684,0.0010195058,0.0012550149,0.035403863,0.0041869073,0.002814927,0.012544752],"genre_scores_gemma":[0.06726318,0.0015811202,0.89650244,0.0006134251,0.00021844431,0.024232639,0.0071868105,0.0003411907,0.0020607482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.735018,0.10753384,0.049928,0.013266179,0.08992339,0.0043305513],"domain_scores_gemma":[0.77097905,0.039102737,0.023255795,0.05472325,0.110023156,0.0019159738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.17080094,0.0024471472,0.0029245843,0.0112942755,0.004570101,0.006611959,0.0082950145,0.005188192,0.0025823873],"category_scores_gemma":[0.12598073,0.0020662781,0.00291575,0.0064468896,0.0056328285,0.002389177,0.0031107764,0.0034534368,0.0022308582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038864065,0.0054964093,0.05699102,0.004768978,0.000584425,0.0007889392,0.0068281097,0.007525875,0.570885,0.018307969,0.010922952,0.31301388],"study_design_scores_gemma":[0.0007272494,0.010122384,0.06319369,0.0034165313,0.0011060364,0.002520278,0.0028475004,0.016033815,0.78520185,0.005241649,0.108916126,0.0006729865],"about_ca_topic_score_codex":0.005271158,"about_ca_topic_score_gemma":0.006605307,"teacher_disagreement_score":0.17080094,"about_ca_system_score_codex":0.0036293697,"about_ca_system_score_gemma":0.012376427,"threshold_uncertainty_score":0.9032925},"labels":[],"label_agreement":null},{"id":"W2120078931","doi":"10.1128/jcm.39.4.1657-1660.2001","title":"Multilocus Genotyping Indicates that the Ability To Invade the Bloodstream Is Widespread among <i>Candida albicans</i> Isolates","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Genotyping; Biology; Genotype; Candida albicans; Microbiology; Fungemia; Corpus albicans; Dendrogram; Bloodstream infection; Allele; Genetics; Genetic diversity; Antifungal; Population; Gene; Medicine","score_opus":0.05520567457974739,"score_gpt":0.36863637292118073,"score_spread":0.31343069834143333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120078931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99692315,0.00021898646,0.0012996402,0.000061786704,0.0000038085307,0.000011129261,0.0005027098,0.000024633346,0.0009541434],"genre_scores_gemma":[0.9975134,0.000095245756,0.0013259175,0.0000321203,0.000004536361,0.0000055653004,0.00075335975,0.000009408544,0.00026037535],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994536,0.00006022525,0.000058561058,0.00015725424,0.0001739305,0.000096294854],"domain_scores_gemma":[0.99911505,0.00016119936,0.00036200747,0.000073313924,0.00015633578,0.0001321226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023295367,0.00015947339,0.00027526048,0.00061001733,0.0002643656,0.0006439418,0.0001614391,0.00026136992,0.0012338331],"category_scores_gemma":[0.0011235945,0.00010541209,0.0001695334,0.00060144166,0.000201763,0.0001624482,0.00025856716,0.00028557156,0.0003864845],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000597714,0.000079809586,0.13339745,0.00009612315,0.00008790726,0.00042124433,0.00045631896,0.0001691152,0.8464641,0.00017941803,0.00036281685,0.017688073],"study_design_scores_gemma":[0.000032081934,0.0005280826,0.8891057,0.00004295286,0.000133057,0.004623711,0.0005305331,0.00063288707,0.100261614,0.00019768794,0.0038704644,0.000041235093],"about_ca_topic_score_codex":0.0023922543,"about_ca_topic_score_gemma":0.0032734866,"teacher_disagreement_score":0.0023922543,"about_ca_system_score_codex":0.00016851483,"about_ca_system_score_gemma":0.00014150806,"threshold_uncertainty_score":0.0047566295},"labels":[],"label_agreement":null},{"id":"W2120215662","doi":"10.1128/jcm.05676-11","title":"Emergence of a New Swine H3N2 and Pandemic (H1N1) 2009 Influenza A Virus Reassortant in Two Canadian Animal Populations, Mink and Swine","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Nova Scotia Department of Agriculture; Hôpital Saint-François d'Assise; Université de Montréal","funders":"","keywords":"Mink; Virology; Neuraminidase; Virus; Biology; Pandemic; Influenza A virus; Hemagglutinin (influenza); H5N1 genetic structure; Genome; Reassortment; Gene; Coronavirus disease 2019 (COVID-19); Genetics; Infectious disease (medical specialty); Medicine","score_opus":0.3478194589750054,"score_gpt":0.502592539920526,"score_spread":0.1547730809455206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120215662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99934417,0.00006199436,0.000055600867,0.000030355593,0.000005027804,0.000021322843,0.00014891985,0.0000019712347,0.00033061157],"genre_scores_gemma":[0.99827945,0.00012653512,0.00033492025,0.00009436613,0.000003940514,0.000013409528,0.00049776677,0.000003499679,0.00064614875],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994336,0.00002685494,0.000018504312,0.00014612108,0.00020759262,0.0001674566],"domain_scores_gemma":[0.9995919,0.000019707095,0.00003853336,0.000020530886,0.00020226421,0.0001272362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047086526,0.00042468554,0.00027194218,0.0006929378,0.0030010112,0.00081119355,0.00049707724,0.0004816853,0.0006683491],"category_scores_gemma":[0.00062695885,0.00030470916,0.00038440694,0.00057881646,0.00083758106,0.00023630449,0.00035849062,0.00057220476,0.00010587053],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010975106,0.0002392701,0.88074464,0.000049894214,0.00014172946,0.0016667576,0.00580363,0.00021424667,0.098746784,0.00021097357,0.0007538682,0.010330821],"study_design_scores_gemma":[0.000018054228,0.00021858384,0.9939673,0.000005890608,0.000037474612,0.0006532595,0.0017258176,0.00023867782,0.002255132,0.000014307224,0.00084944925,0.00001606072],"about_ca_topic_score_codex":0.9016962,"about_ca_topic_score_gemma":0.9526211,"teacher_disagreement_score":0.098303795,"about_ca_system_score_codex":0.011334143,"about_ca_system_score_gemma":0.007215101,"threshold_uncertainty_score":0.19776541},"labels":[],"label_agreement":null},{"id":"W2120218258","doi":"10.1128/jcm.40.8.2729-2740.2002","title":"Ca3 Fingerprinting of <i>Candida albicans</i> Bloodstream Isolates from the United States, Canada, South America, and Europe Reveals a European Clade","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Pfizer","keywords":"Clade; Biology; Corpus albicans; Molecular epidemiology; Phylogenetic tree; DNA profiling; Candida albicans; Cluster (spacecraft); Geography; Microbiology; Genotype; Genetics; Gene","score_opus":0.032804583841939995,"score_gpt":0.28840630601989176,"score_spread":0.25560172217795174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120218258","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953198,0.00036077818,0.00062001956,0.00007156579,0.0000055133637,0.00002372715,0.0006268823,0.000015316009,0.0029563839],"genre_scores_gemma":[0.9928311,0.00034752622,0.0023578226,0.00013245466,0.0000051742304,0.000015357706,0.002878295,0.00001713652,0.0014150707],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99969184,0.000023315535,0.00002044156,0.00006424623,0.00011254906,0.000087612585],"domain_scores_gemma":[0.9994962,0.00004915801,0.000081221566,0.000032072247,0.00021871469,0.00012250825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022813246,0.00022742598,0.0001742334,0.0011819337,0.0007398102,0.0006563535,0.00017139691,0.00017538063,0.0010700149],"category_scores_gemma":[0.0007198763,0.00010959007,0.00019290207,0.0013068091,0.0002774923,0.00013024725,0.0003499752,0.00021162532,0.00028031733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006407097,0.00008268582,0.5491972,0.00008813065,0.00018287095,0.0007087655,0.002326858,0.000336077,0.40910923,0.000323028,0.0013081543,0.035696287],"study_design_scores_gemma":[0.000008400109,0.000051313327,0.980888,0.000028242996,0.00003278514,0.00051806687,0.00073533057,0.00024736678,0.012723465,0.00004901313,0.0047075725,0.000010422917],"about_ca_topic_score_codex":0.24913731,"about_ca_topic_score_gemma":0.32483295,"teacher_disagreement_score":0.7508627,"about_ca_system_score_codex":0.0008712889,"about_ca_system_score_gemma":0.0018694041,"threshold_uncertainty_score":0.49537432},"labels":[],"label_agreement":null},{"id":"W2120411669","doi":"10.1128/jcm.39.3.943-948.2001","title":"Diversity within Reference Strains of <i>Corynebacterium matruchotii</i> Includes <i>Corynebacterium durum</i> and a Novel Organism","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; Manitoba Health","funders":"bioMérieux","keywords":"Biology; Corynebacterium; Microbiology; Hypervariable region; 16S ribosomal RNA; Strain (injury); Ribosomal RNA; Bacteria; Gene; Genetics","score_opus":0.04176088379081243,"score_gpt":0.30640344755651283,"score_spread":0.2646425637657004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120411669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99399805,0.0010865435,0.0021480778,0.000060677034,0.000035240468,0.000102610546,0.0014075675,0.000042745727,0.0011185356],"genre_scores_gemma":[0.9778697,0.0008807677,0.013189228,0.00006491503,0.00003582884,0.00016029406,0.0070120613,0.000034891626,0.00075232453],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986676,0.00015926367,0.00026846837,0.00034871328,0.00040410444,0.00015191466],"domain_scores_gemma":[0.999116,0.00017133339,0.00020911243,0.00017532067,0.00025833317,0.00006987842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006424139,0.0005317151,0.00052732154,0.0013218013,0.0004930886,0.0007111561,0.00056759885,0.00045110763,0.00057116867],"category_scores_gemma":[0.0016204827,0.00018319288,0.00034259103,0.0017338408,0.0002525113,0.00027540643,0.00055521,0.00033845118,0.0002826063],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005446369,0.0001780108,0.057249613,0.00023064714,0.000046636073,0.00047810472,0.0005900083,0.00017992956,0.92172986,0.00016389712,0.00017259437,0.018436115],"study_design_scores_gemma":[0.000052957927,0.0023078898,0.48928508,0.00014420135,0.00030276718,0.009421413,0.0023352916,0.0015032131,0.4789737,0.0002165777,0.015389237,0.00006766985],"about_ca_topic_score_codex":0.003836487,"about_ca_topic_score_gemma":0.00474097,"teacher_disagreement_score":0.003836487,"about_ca_system_score_codex":0.00027705243,"about_ca_system_score_gemma":0.00052865973,"threshold_uncertainty_score":0.0076283216},"labels":[],"label_agreement":null},{"id":"W2120618774","doi":"10.1128/jcm.01634-15","title":"Tonsillar Syphilis: an Unusual Site of Infection Detected by Treponema pallidum PCR","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Treponematosis; Syphilis Serodiagnosis; Virology; Medicine; Public health; Immunology; Disease; Pathology; Sexually transmitted disease; Dermatology; Human immunodeficiency virus (HIV)","score_opus":0.09455050582816626,"score_gpt":0.4060602991386954,"score_spread":0.31150979331052914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120618774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.965542,0.005339969,0.0059946715,0.0019976948,0.0008668914,0.00019705074,0.0003058138,0.0005723885,0.019183565],"genre_scores_gemma":[0.9968071,0.0007323088,0.0011982446,0.00032116313,0.00042191302,0.000011980491,0.000039911705,0.000026696485,0.0004405729],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9987841,0.00015324059,0.00013944932,0.00022596124,0.00026237094,0.00043484193],"domain_scores_gemma":[0.9973158,0.00087914604,0.0006493714,0.00026433,0.00017221077,0.000719111],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046765845,0.001979016,0.0011602455,0.0025440136,0.001583713,0.002054114,0.0012688338,0.0044773,0.002635044],"category_scores_gemma":[0.0039159134,0.0016077948,0.0010008686,0.0010665612,0.0018343864,0.0017018198,0.0013990692,0.0029239322,0.0012733587],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005202335,0.000036062404,0.0054561873,0.00003989176,0.0000071190775,0.9878176,0.00016674308,0.0000485312,0.004777914,0.00013631815,0.00026999385,0.0011915927],"study_design_scores_gemma":[0.000011901961,0.00008276827,0.00528263,0.000020528045,0.000020251075,0.9919453,0.00014003445,0.00021671176,0.0018369433,0.00008284424,0.00033637378,0.000023591116],"about_ca_topic_score_codex":0.0025198057,"about_ca_topic_score_gemma":0.0025010423,"teacher_disagreement_score":0.0044773,"about_ca_system_score_codex":0.0006721997,"about_ca_system_score_gemma":0.00057253346,"threshold_uncertainty_score":0.00881505},"labels":[],"label_agreement":null},{"id":"W2120711767","doi":"10.1128/jcm.40.7.2686-2688.2002","title":"Laboratory Contamination of Specimens with Quality Control Strains of Vancomycin-Resistant Enterococci in Ontario","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Contamination; Enterococcus faecalis; Enterococcus; Microbiology; Vancomycin; Typing; Vancomycin-Resistant Enterococci; Biology; Bacteria; Antibiotics; Staphylococcus aureus; Ecology","score_opus":0.05009149217352048,"score_gpt":0.32859069306008637,"score_spread":0.2784992008865659,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120711767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99474686,0.0009770348,0.0007422147,0.00018672484,0.000021722033,0.00016730023,0.00047758585,0.000036108922,0.00264458],"genre_scores_gemma":[0.996005,0.00067726325,0.0012594295,0.00021234082,0.000011689811,0.000045242625,0.0007627805,0.00001534419,0.0010108626],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99510854,0.0004966814,0.00049695076,0.0004291014,0.0030276473,0.00044102344],"domain_scores_gemma":[0.9916612,0.0010137717,0.0019367744,0.00057470467,0.004316801,0.00049678894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019224735,0.000391384,0.0003194828,0.0013996423,0.0023335202,0.0011853889,0.00087997504,0.00041205308,0.001117978],"category_scores_gemma":[0.009135456,0.00058007374,0.00023702387,0.0017594829,0.0015241795,0.00028386468,0.00092514115,0.00027685863,0.0002344537],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009228191,0.00013729764,0.9102897,0.00039815268,0.00006830419,0.002928825,0.010223024,0.00023737593,0.043558504,0.00020842934,0.0014348828,0.02959274],"study_design_scores_gemma":[0.000043268024,0.0003774478,0.9711273,0.00013964745,0.00006766447,0.00229706,0.003842445,0.00030744963,0.014721563,0.000041523082,0.0070059556,0.000028750404],"about_ca_topic_score_codex":0.78273284,"about_ca_topic_score_gemma":0.8032357,"teacher_disagreement_score":0.21726716,"about_ca_system_score_codex":0.012019548,"about_ca_system_score_gemma":0.0137782935,"threshold_uncertainty_score":0.43709332},"labels":[],"label_agreement":null},{"id":"W2120822857","doi":"10.1128/jcm.02146-06","title":"International Quality Assurance Study for Characterization of<i>Streptococcus pyogenes</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton","funders":"European Commission","keywords":"Streptococcus pyogenes; Quality assurance; Microbiology; Biology; Medicine; Bacteria; External quality assessment; Genetics; Pathology","score_opus":0.09338155120724198,"score_gpt":0.4780866654388575,"score_spread":0.3847051142316156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120822857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96491367,0.0014713658,0.024221227,0.0004923868,0.0001260346,0.0009929978,0.0016008276,0.00024383588,0.0059375884],"genre_scores_gemma":[0.97640616,0.0002837064,0.017649993,0.00024093034,0.000060843282,0.0002650562,0.0044335597,0.00006605345,0.0005936765],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9687377,0.015543854,0.0036835747,0.0038548345,0.0070613325,0.0011187717],"domain_scores_gemma":[0.9160002,0.014674958,0.019180924,0.014252094,0.03151902,0.0043727932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.043249693,0.0010270424,0.0004492529,0.0027035638,0.0008473833,0.0017223868,0.0012027858,0.00089279976,0.00077516306],"category_scores_gemma":[0.02968819,0.00039170537,0.0006265774,0.002406582,0.0014026493,0.00083861005,0.0012510987,0.0007510923,0.00035384906],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011815019,0.0016064296,0.89966446,0.00035508632,0.00028922613,0.00010935123,0.0014462107,0.001394812,0.028497893,0.0007220307,0.0014244508,0.06330847],"study_design_scores_gemma":[0.00014290566,0.005676477,0.954873,0.000081463084,0.0001582443,0.0005968035,0.00054998056,0.002229132,0.027076872,0.00013415031,0.008441971,0.00003898464],"about_ca_topic_score_codex":0.004231953,"about_ca_topic_score_gemma":0.002172213,"teacher_disagreement_score":0.043249693,"about_ca_system_score_codex":0.0018418151,"about_ca_system_score_gemma":0.0024908765,"threshold_uncertainty_score":0.22872901},"labels":[],"label_agreement":null},{"id":"W2120900442","doi":"10.1128/jcm.44.2.622-624.2006","title":"Use of Molecular Beacon Probes for Real-Time PCR Detection of <i>Plasmodium falciparum</i> and Other <i>Plasmodium</i> Species in Peripheral Blood Specimens","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Plasmodium falciparum; Molecular beacon; Plasmodium (life cycle); Biology; Virology; Molecular probe; Apicomplexa; Peripheral blood; Real-time polymerase chain reaction; Parasite hosting; Malaria; Molecular biology; Immunology; Gene; Genetics","score_opus":0.03530797820568612,"score_gpt":0.31509332850612964,"score_spread":0.27978535030044355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120900442","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10863334,0.006350471,0.8791141,0.0006233566,0.00046302928,0.0005796649,0.0002825398,0.0013194288,0.0026341018],"genre_scores_gemma":[0.17024802,0.004276878,0.8189795,0.00048685505,0.00013546592,0.0010769875,0.00079501496,0.00010498828,0.0038963505],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973642,0.0008087818,0.00021058613,0.0007192302,0.00066559773,0.0002316198],"domain_scores_gemma":[0.9977701,0.0010245489,0.00045341367,0.00015806271,0.00042900967,0.00016493045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003030561,0.0013056216,0.0010572467,0.0010273953,0.00046562345,0.0009270925,0.0016354185,0.001624814,0.0013150352],"category_scores_gemma":[0.0036940882,0.0011232761,0.00079839287,0.00049897894,0.0008493339,0.001138225,0.0007951849,0.0026341106,0.0011204472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025492487,0.00009905219,0.0011000924,0.0002641664,0.000025492134,0.00015278166,0.00014758606,0.00036232301,0.9611866,0.0006013936,0.00033840878,0.03546723],"study_design_scores_gemma":[0.00007211442,0.0012319626,0.0013773111,0.00006627405,0.00008240533,0.0020028774,0.00004806949,0.004258321,0.9813952,0.0004216206,0.008990521,0.000053414136],"about_ca_topic_score_codex":0.00035100046,"about_ca_topic_score_gemma":0.00065702153,"teacher_disagreement_score":0.003030561,"about_ca_system_score_codex":0.0005265102,"about_ca_system_score_gemma":0.00063660514,"threshold_uncertainty_score":0.016027272},"labels":[],"label_agreement":null},{"id":"W2121784940","doi":"10.1128/jcm.38.2.752-754.2000","title":"Correlation of Oxacillin MIC with <i>mecA</i> Gene Carriage in Coagulase-Negative Staphylococci","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"SCCmec; Microbiology; Breakpoint; Coagulase; Biology; Agar dilution; Staphylococcus; Cefoxitin; Staphylococcus saprophyticus; Staphylococcus haemolyticus; Micrococcaceae; cons; Staphylococcus epidermidis; Antibacterial agent; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Bacteria; Minimum inhibitory concentration; Gene; Antimicrobial; Antibiotics; Genetics","score_opus":0.02501577487452993,"score_gpt":0.3320129321717121,"score_spread":0.3069971572971822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121784940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986217,0.0006471533,0.00013547605,0.000032593787,0.000008547802,0.000004039298,0.000103421175,0.0000116927795,0.00043535398],"genre_scores_gemma":[0.99953973,0.00009648278,0.00014475867,0.000013010563,0.0000069477137,0.000003059921,0.00011170295,0.0000023831235,0.00008193972],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999171,0.00025564944,0.00013751577,0.00013046218,0.00019736376,0.00010795208],"domain_scores_gemma":[0.99478006,0.002308319,0.0016127173,0.00016745889,0.00075393706,0.0003775393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074134866,0.0003140401,0.0003199339,0.0011716612,0.00014429275,0.0005406368,0.00022747174,0.0005221696,0.0009366896],"category_scores_gemma":[0.0065193973,0.00024645176,0.000188425,0.0007242913,0.00030888533,0.00026797137,0.00018416083,0.0004396371,0.00036370882],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039867064,0.00004223427,0.9922809,0.000015031172,0.000027952177,0.00017428727,0.000038986665,0.0001287157,0.0044395914,0.000010434731,0.00009676201,0.0023464458],"study_design_scores_gemma":[0.000008802314,0.00036925284,0.9936265,0.000008709851,0.000028213863,0.0012329951,0.000053399763,0.0009247238,0.0034775406,0.000023603709,0.00023956706,0.0000066976613],"about_ca_topic_score_codex":0.0019919712,"about_ca_topic_score_gemma":0.0014017571,"teacher_disagreement_score":0.0019919712,"about_ca_system_score_codex":0.0002791465,"about_ca_system_score_gemma":0.00014980356,"threshold_uncertainty_score":0.0039607882},"labels":[],"label_agreement":null},{"id":"W2121924886","doi":"10.1128/jcm.43.9.4665-4673.2005","title":"Multilocus Sequence Typing Scheme That Provides Both Species and Strain Differentiation for the <i>Burkholderia cepacia</i> Complex","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":221,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Cardiff University; University of Oxford; University of Warwick; Wellcome Trust","keywords":"Multilocus sequence typing; Housekeeping gene; Biology; Burkholderia cepacia complex; Typing; Genetics; Strain (injury); Burkholderia; Microbiology; Computational biology; Evolutionary biology; Genotype; Gene; Bacteria","score_opus":0.1909803587711544,"score_gpt":0.4355645226877836,"score_spread":0.2445841639166292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121924886","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42502698,0.0018781882,0.55926234,0.00046529624,0.0005411684,0.0022158911,0.0038996988,0.0018035696,0.004907012],"genre_scores_gemma":[0.35444734,0.0006432603,0.63709754,0.00021196315,0.00007425409,0.00057066116,0.004590526,0.000099647725,0.0022647697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809104,0.00050682016,0.0002619317,0.0003651526,0.00060979114,0.00016531473],"domain_scores_gemma":[0.99733293,0.0003511547,0.00078666664,0.00045667385,0.0008263257,0.00024630985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020776875,0.00045327534,0.00094825844,0.0016994358,0.00044788566,0.00072792795,0.0005801746,0.0005897518,0.0010724845],"category_scores_gemma":[0.0037409305,0.0002955429,0.00047150417,0.0009634266,0.00041467807,0.00062660105,0.0004817574,0.00085889245,0.0014006657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000989888,0.00032921077,0.025571842,0.0002863829,0.000095681164,0.00016538957,0.00037360366,0.0013971078,0.75968903,0.001877948,0.0016464952,0.20757724],"study_design_scores_gemma":[0.00035200777,0.006826836,0.0759542,0.00024105543,0.0004199621,0.0054885107,0.00027543155,0.032186575,0.8016067,0.0019298417,0.07439635,0.000322466],"about_ca_topic_score_codex":0.0009550592,"about_ca_topic_score_gemma":0.0015630287,"teacher_disagreement_score":0.0020776875,"about_ca_system_score_codex":0.0005487307,"about_ca_system_score_gemma":0.00079883117,"threshold_uncertainty_score":0.010987997},"labels":[],"label_agreement":null},{"id":"W2122060112","doi":"10.1128/jcm.03058-14","title":"Emergence of an Outbreak-Associated Clostridium difficile Variant with Increased Virulence","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Wellcome Trust","keywords":"Clostridium difficile; Outbreak; Virulence; Microbiology; Clostridium Infections; Clostridiaceae; Biology; Virology; Clostridium; Medicine; Bacteria; Antibiotics; Genetics; Gene; Toxin","score_opus":0.07818181124438267,"score_gpt":0.3849254758493512,"score_spread":0.30674366460496855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122060112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994288,0.00006542585,0.00016521409,0.000024630554,0.0000034521363,0.000008689403,0.00008678401,0.000009408423,0.00020750098],"genre_scores_gemma":[0.99889296,0.00007232715,0.0005217682,0.000033690536,0.000007822066,0.000004470408,0.00030132468,0.0000050187236,0.00016067737],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99982846,0.000015311849,0.000016557588,0.00004466028,0.000040523042,0.000054417607],"domain_scores_gemma":[0.9997253,0.000022138565,0.000105559084,0.000044903187,0.000051256895,0.000050782306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001241704,0.00030237087,0.00023727395,0.00027835747,0.0002741683,0.0003834564,0.0001988522,0.00030406055,0.00044217528],"category_scores_gemma":[0.00046893404,0.00012423271,0.00030126967,0.00037520583,0.00016755222,0.00014221336,0.00030819877,0.0003812078,0.00012378217],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069246994,0.00017834372,0.40561238,0.00008811126,0.000091149544,0.007950914,0.0005393157,0.0005788709,0.5707422,0.0002062064,0.00045938528,0.01286062],"study_design_scores_gemma":[0.00002242212,0.00036660928,0.9501558,0.000014488604,0.000049512128,0.014641098,0.00048741003,0.0016940763,0.03058853,0.00008072914,0.001876464,0.00002289377],"about_ca_topic_score_codex":0.004808792,"about_ca_topic_score_gemma":0.004174851,"teacher_disagreement_score":0.004808792,"about_ca_system_score_codex":0.00043770307,"about_ca_system_score_gemma":0.00027399792,"threshold_uncertainty_score":0.009561598},"labels":[],"label_agreement":null},{"id":"W2122378718","doi":"10.1128/jcm.01063-10","title":"Human Papillomavirus (HPV) DNA Triage of Women with Atypical Squamous Cells of Undetermined Significance with Amplicor HPV and Hybrid Capture 2 Assays for Detection of High-Grade Lesions of the Uterine Cervix","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"Health Canada","keywords":"Colposcopy; Cervical intraepithelial neoplasia; Medicine; Cytology; Human papillomavirus; Hybrid capture; Cervix; Confidence interval; Papillomaviridae; Gynecology; Internal medicine; Gastroenterology; Cervical cancer; Pathology; Cancer","score_opus":0.0403972691429793,"score_gpt":0.3639516785827282,"score_spread":0.3235544094397489,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122378718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832946,0.00061734294,0.00036270905,0.000033093304,0.000010702714,0.00008293174,0.0001242128,0.000016773733,0.000422846],"genre_scores_gemma":[0.9978764,0.0003083587,0.0010691538,0.000048704354,0.000015084281,0.000065986984,0.00025464947,0.0000034319844,0.0003582995],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991743,0.00032370185,0.000074778465,0.00015405905,0.00020748928,0.000065587024],"domain_scores_gemma":[0.9987155,0.00052623055,0.00027170635,0.00013214284,0.0002045441,0.00014984659],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015999372,0.00031401796,0.00041920747,0.0011551941,0.00024417645,0.00032340628,0.00038368898,0.0005970468,0.001231539],"category_scores_gemma":[0.0039269733,0.0004986098,0.00027269096,0.0006065288,0.00029995188,0.00036119868,0.0005125815,0.00035598507,0.00041976172],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010025053,0.000053952008,0.98522896,0.000054076616,0.000028031607,0.00024366744,0.00029081688,0.00005009327,0.0034774474,0.000016220292,0.0001973364,0.009356835],"study_design_scores_gemma":[0.00007003492,0.0011641289,0.99237263,0.000017452934,0.000043589516,0.0019616697,0.00021380754,0.0010237258,0.0023683112,0.000052862764,0.00070055237,0.000011237285],"about_ca_topic_score_codex":0.0019198111,"about_ca_topic_score_gemma":0.0026900007,"teacher_disagreement_score":0.0019198111,"about_ca_system_score_codex":0.00025209825,"about_ca_system_score_gemma":0.00031488042,"threshold_uncertainty_score":0.008461356},"labels":[],"label_agreement":null},{"id":"W2122704841","doi":"10.1128/jcm.42.8.3475-3482.2004","title":"Interlaboratory Comparison of Results of Susceptibility Testing with Caspofungin against <i>Candida</i> and <i>Aspergillus</i> Species","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Caspofungin; Broth microdilution; Reproducibility; Microbiology; Biology; Aspergillus; Serial dilution; Fluconazole; Fungi imperfecti; Minimum inhibitory concentration; Antifungal; Chromatography; Chemistry; Medicine; Antibiotics; Pathology","score_opus":0.057879989372186844,"score_gpt":0.3631748959356033,"score_spread":0.30529490656341646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122704841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9321562,0.0028369476,0.054375075,0.000284161,0.00049997005,0.000853988,0.001722312,0.0014124652,0.0058589913],"genre_scores_gemma":[0.96848583,0.0003241842,0.025198774,0.0003380521,0.00015025798,0.0005081086,0.0038108411,0.0003140717,0.00086997246],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.8935688,0.0404264,0.012486996,0.019819995,0.031249171,0.0024485814],"domain_scores_gemma":[0.85954505,0.066179864,0.015192871,0.025186624,0.031791095,0.0021043734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.051304996,0.0015309637,0.0009440887,0.0027808985,0.00093300303,0.0025981723,0.0020561677,0.0018065744,0.0010489709],"category_scores_gemma":[0.08704715,0.0010638731,0.0012409206,0.0023911565,0.0024217085,0.0007835743,0.0026413037,0.00088060496,0.0010184951],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0052235173,0.0012054666,0.62632114,0.0013502806,0.0024160522,0.00059711986,0.0079292245,0.0039878725,0.24883407,0.0006924572,0.0024828734,0.09895993],"study_design_scores_gemma":[0.0003195375,0.0068373545,0.6991997,0.00029381405,0.0014699764,0.0014895764,0.0015935403,0.00822669,0.26908767,0.0008906967,0.010322374,0.00026917906],"about_ca_topic_score_codex":0.0026336762,"about_ca_topic_score_gemma":0.002690808,"teacher_disagreement_score":0.051304996,"about_ca_system_score_codex":0.0013240511,"about_ca_system_score_gemma":0.0010667056,"threshold_uncertainty_score":0.27133},"labels":[],"label_agreement":null},{"id":"W2123034253","doi":"10.1128/jcm.39.6.2115-2121.2001","title":"Utility of Inoculum Counting (Walshe and English Criteria) in Clinical Diagnosis of Onychomycosis Caused by Nondermatophytic Filamentous Fungi","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care; University of Toronto; Western University; Sunnybrook Health Science Centre","funders":"","keywords":"Nail (fastener); Mold; Medicine; Mycosis; Fungal growth; Dermatology; Nail disease; Nail plate; Biology; Pathology; Surgery; Microbiology","score_opus":0.05001048675201554,"score_gpt":0.3972715367942188,"score_spread":0.34726105004220326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123034253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99093413,0.0018726443,0.0036577284,0.00009211071,0.000050597955,0.00012408689,0.00013610654,0.00004795304,0.0030846503],"genre_scores_gemma":[0.99383754,0.00070802093,0.004840886,0.000039546296,0.000032474287,0.000042605956,0.00024017617,0.000008399354,0.0002504533],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.996182,0.0012133097,0.00072051294,0.00046280038,0.001091057,0.00033026707],"domain_scores_gemma":[0.99280727,0.0038851367,0.0012495875,0.000607699,0.0009781185,0.00047231876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005334009,0.00092847954,0.0006968062,0.0040164916,0.0004131802,0.0008852928,0.0011256669,0.00080007897,0.0009559532],"category_scores_gemma":[0.019220276,0.00044261257,0.00040658357,0.001019733,0.0010389918,0.0014151199,0.0014098046,0.00055318786,0.0006021954],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044567377,0.00010047365,0.9644028,0.00007488067,0.0000247032,0.004386582,0.00028924175,0.00018709309,0.008260191,0.00012258449,0.00020498071,0.021500763],"study_design_scores_gemma":[0.00004988098,0.001251139,0.9641781,0.00006457665,0.00006839021,0.021808837,0.00053705747,0.004119465,0.006062002,0.0003120786,0.0015046981,0.000043725297],"about_ca_topic_score_codex":0.0015707995,"about_ca_topic_score_gemma":0.0019024378,"teacher_disagreement_score":0.005334009,"about_ca_system_score_codex":0.00027084377,"about_ca_system_score_gemma":0.00039571492,"threshold_uncertainty_score":0.028209269},"labels":[],"label_agreement":null},{"id":"W2123080572","doi":"10.1128/jcm.01113-08","title":"Utility of the Germ Tube Test for Direct Identification of <i>Candida albicans</i> from Positive Blood Culture Bottles","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont; McGill University","funders":"","keywords":"Germ tube; Candida albicans; Microbiology; Blood culture; Biology; Corpus albicans; Identification (biology); Antibiotics","score_opus":0.03394531389926243,"score_gpt":0.3454191089278754,"score_spread":0.311473795028613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123080572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97832525,0.007507004,0.00820304,0.00032527966,0.00018560744,0.0001123623,0.0003821865,0.00013239615,0.0048268824],"genre_scores_gemma":[0.9856059,0.0013126147,0.012142597,0.00011910781,0.000061416555,0.000029033128,0.00022237758,0.000022133649,0.00048477555],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9945129,0.0024083247,0.00041125127,0.00050927297,0.0019267764,0.0002314438],"domain_scores_gemma":[0.991732,0.0049608327,0.00070726825,0.00047490172,0.001753122,0.00037185068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033713388,0.00058372284,0.00065237674,0.0018579201,0.00023632366,0.0013293213,0.0008818889,0.0007458136,0.0007789874],"category_scores_gemma":[0.013807339,0.00027882415,0.00043282102,0.00076837826,0.0005539012,0.00074521045,0.00058621477,0.0006489188,0.00061411073],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008399215,0.0011396229,0.48146632,0.00089392246,0.0003525369,0.0018946065,0.0008856689,0.001244766,0.33034047,0.0004583909,0.0013206047,0.17160387],"study_design_scores_gemma":[0.0002610522,0.017628353,0.3704853,0.00041301243,0.0009538207,0.021437775,0.0009770556,0.014504,0.56334096,0.0004873024,0.009274299,0.00023709395],"about_ca_topic_score_codex":0.002336934,"about_ca_topic_score_gemma":0.0023019153,"teacher_disagreement_score":0.0033713388,"about_ca_system_score_codex":0.00038450753,"about_ca_system_score_gemma":0.000529428,"threshold_uncertainty_score":0.017829597},"labels":[],"label_agreement":null},{"id":"W2123194679","doi":"10.1128/jcm.01497-13","title":"Novel Fastidious, Partially Acid-Fast, Anaerobic Gram-Positive Bacillus Associated with Abscess Formation and Recovered from Multiple Medical Centers","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Weill Cornell Medical College; Public Health Agency","keywords":"Fastidious organism; Microbiology; Anaerobic exercise; Gram; Abscess; Biology; Bacteria; Bacillus (shape); Medicine; Pathology; Surgery; Physiology","score_opus":0.032476900255744616,"score_gpt":0.31649107000787274,"score_spread":0.2840141697521281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123194679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990495,0.00016236209,0.00028234586,0.000068928646,0.000007799067,0.000016328859,0.00004069079,0.0000071762506,0.00036507755],"genre_scores_gemma":[0.9992322,0.00007192243,0.00043606068,0.000051428695,0.000017007551,0.0000037666302,0.00005031704,0.0000039383926,0.0001333796],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9996244,0.000047444686,0.00005538473,0.00008690403,0.00007746644,0.00010836681],"domain_scores_gemma":[0.99924797,0.00011706245,0.00022284083,0.000049287788,0.00008707718,0.0002757491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017160753,0.0005143885,0.00034591972,0.0007331944,0.0012386716,0.0008275187,0.00028371724,0.00045651037,0.0012905336],"category_scores_gemma":[0.0012909503,0.0003343742,0.00019566034,0.0005093558,0.0004945985,0.00042567696,0.00065741397,0.0004993632,0.00020711447],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051999954,0.00034423568,0.74108744,0.00015841464,0.000080081285,0.20415872,0.0015669747,0.00026173852,0.03905928,0.00019085487,0.00070771686,0.011864539],"study_design_scores_gemma":[0.000086740096,0.0010718283,0.4392172,0.0000665614,0.00013808331,0.54381305,0.0033729938,0.000798418,0.008573532,0.00019379552,0.0026255453,0.000042287862],"about_ca_topic_score_codex":0.0024516012,"about_ca_topic_score_gemma":0.003752546,"teacher_disagreement_score":0.0024516012,"about_ca_system_score_codex":0.00026714106,"about_ca_system_score_gemma":0.00051393616,"threshold_uncertainty_score":0.0048746467},"labels":[],"label_agreement":null},{"id":"W2123374964","doi":"10.1128/jcm.00340-10","title":"Multicenter Study To Determine Disk Diffusion and Broth Microdilution Criteria for Prediction of High- and Low-Level Mupirocin Resistance in <i>Staphylococcus aureus</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"Centers for Disease Control and Prevention","keywords":"Broth microdilution; Mupirocin; Staphylococcus aureus; Microbiology; Agar diffusion test; Antibacterial agent; Biology; Micrococcaceae; Medicine; Minimum inhibitory concentration; Antibiotics; Methicillin-resistant Staphylococcus aureus; Bacteria","score_opus":0.03907533096719619,"score_gpt":0.3605902729389151,"score_spread":0.3215149419717189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123374964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99582905,0.00055780256,0.0010479691,0.0001804142,0.00003681209,0.00064928207,0.0008211226,0.000044865064,0.0008326558],"genre_scores_gemma":[0.9957671,0.00008722412,0.0021806655,0.00029586864,0.00005742297,0.0004195721,0.0010042613,0.000016050812,0.00017171426],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9953389,0.002703754,0.0004021645,0.0007226663,0.0005494474,0.00028299502],"domain_scores_gemma":[0.98238844,0.0054492434,0.0055035194,0.00148824,0.0030004943,0.0021700857],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008509854,0.0010516058,0.0008230128,0.00062692305,0.0004921772,0.0010690943,0.0006062724,0.0011203251,0.0013162299],"category_scores_gemma":[0.01788687,0.00046841288,0.0005363817,0.0005248807,0.0005084351,0.0006089792,0.0004994798,0.0009161168,0.0006172483],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.024175229,0.0025878518,0.95103174,0.000113076276,0.00061586744,0.00041112097,0.0003580974,0.0002940675,0.0077800797,0.00016809798,0.001155044,0.011309672],"study_design_scores_gemma":[0.0066130343,0.04224543,0.9366443,0.0000831903,0.0005545491,0.0026671276,0.00042327412,0.004450218,0.0033845773,0.00013218352,0.0027364662,0.000065684166],"about_ca_topic_score_codex":0.0014193428,"about_ca_topic_score_gemma":0.00082113355,"teacher_disagreement_score":0.008509854,"about_ca_system_score_codex":0.0005971589,"about_ca_system_score_gemma":0.00077112863,"threshold_uncertainty_score":0.045004964},"labels":[],"label_agreement":null},{"id":"W2123673715","doi":"10.1128/jcm.01979-10","title":"Molecular and Phenotypic Characterization of Phialemonium and Lecythophora Isolates from Clinical Samples","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"","keywords":"Biology; Ribosomal DNA; Ribosomal RNA; Zoology; Microbiology; Phylogenetics; Genetics; Gene","score_opus":0.04222905025837055,"score_gpt":0.3020566230562445,"score_spread":0.25982757279787394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123673715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975903,0.00044827364,0.00070386543,0.0000759805,0.000015445636,0.0000950124,0.0004575189,0.000007963496,0.00060561195],"genre_scores_gemma":[0.99589807,0.00057852536,0.0019047528,0.000069608075,0.00003381947,0.00005602006,0.0011124851,0.000005994067,0.00034063327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946266,0.00007448981,0.00009877204,0.00011099056,0.0001623535,0.00009069745],"domain_scores_gemma":[0.9993643,0.00016259226,0.00016515807,0.000046068857,0.00017056543,0.00009134422],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002440217,0.00040298337,0.0004607824,0.00077087106,0.00031819363,0.00056219014,0.00022625654,0.0003818479,0.00066709355],"category_scores_gemma":[0.0017156466,0.0001682679,0.00025879973,0.00051703927,0.00030956103,0.00026909148,0.00026407212,0.00037311844,0.00037303276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008341235,0.00035922928,0.261287,0.0004429726,0.000056835182,0.0059920675,0.00082545006,0.00019158513,0.7104359,0.000086081935,0.00028008228,0.019208614],"study_design_scores_gemma":[0.00008525172,0.0018108069,0.8158209,0.000103167375,0.00017859618,0.031695116,0.0027852084,0.001188959,0.14172599,0.00012548639,0.0044490295,0.000031436437],"about_ca_topic_score_codex":0.0014980636,"about_ca_topic_score_gemma":0.0012000935,"teacher_disagreement_score":0.0014980636,"about_ca_system_score_codex":0.00013379304,"about_ca_system_score_gemma":0.00027746562,"threshold_uncertainty_score":0.002978623},"labels":[],"label_agreement":null},{"id":"W2123735282","doi":"10.1128/jcm.40.8.2832-2836.2002","title":"Nasopharyngeal Carriage of Potential Bacterial Pathogens Related to Day Care Attendance, with Special Reference to the Molecular Epidemiology of <i>Haemophilus influenzae</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health","funders":"","keywords":"Moraxella catarrhalis; Haemophilus influenzae; Carriage; Microbiology; Moraxella (Branhamella) catarrhalis; Streptococcus pneumoniae; Biology; Moraxella; Genotype; Pasteurellaceae; Serotype; Epidemiology; Virology; Medicine; Antibiotics; Bacteria; Genetics; Internal medicine; Gene","score_opus":0.04227222739694522,"score_gpt":0.34350285353262955,"score_spread":0.3012306261356843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123735282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99952805,0.00018962532,0.000023142416,0.000007969953,0.0000022580218,0.0000061871774,0.00011400518,0.0000013845581,0.00012731923],"genre_scores_gemma":[0.9994848,0.00016775899,0.0000777237,0.000010109358,0.0000060161483,0.0000061041846,0.00016411683,0.000001070973,0.00008234106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992642,0.0001414783,0.000067053574,0.00018306436,0.00015854598,0.00018565891],"domain_scores_gemma":[0.99853265,0.00028877074,0.00063254195,0.00005530399,0.00018447553,0.0003062499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033562072,0.00044278373,0.00034945592,0.0011123292,0.0005217897,0.00066041725,0.00036152836,0.0005604244,0.00088720245],"category_scores_gemma":[0.0017417513,0.00033364247,0.00022104557,0.0008124274,0.00078887306,0.00033961763,0.0004205736,0.00035101402,0.00015469226],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007505135,0.000024678508,0.9972234,0.000027804988,0.000019901105,0.0002320642,0.00028354948,0.000021996942,0.0010998498,0.00000817756,0.000053294803,0.000930268],"study_design_scores_gemma":[0.0000024082276,0.00013544821,0.99852127,0.000004764395,0.000010647224,0.0006448658,0.00031165167,0.000058171663,0.00017754362,0.0000043030286,0.00012541424,0.0000035728108],"about_ca_topic_score_codex":0.028275613,"about_ca_topic_score_gemma":0.025164532,"teacher_disagreement_score":0.028275613,"about_ca_system_score_codex":0.0010546623,"about_ca_system_score_gemma":0.00044210406,"threshold_uncertainty_score":0.05622208},"labels":[],"label_agreement":null},{"id":"W2124002630","doi":"10.1128/jcm.41.9.4054-4057.2003","title":"Characterization of a Herpesvirus Associated with Tracheitis in Gouldian Finches ( <i>Erythrura</i> [ <i>Chloebia</i> ] <i>gouldiae</i> )","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Virology; Polymerase chain reaction; Subfamily; Tracheitis; Herpesviridae; Gene; Sequence analysis; Genetics; Molecular biology; Virus; Bronchitis; Viral disease","score_opus":0.03396226354045255,"score_gpt":0.3253612567132481,"score_spread":0.29139899317279555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124002630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99974793,0.00006971235,0.000065406115,0.0000054213674,9.810851e-7,0.0000053137715,0.000017067803,0.0000017292617,0.00008638113],"genre_scores_gemma":[0.99942434,0.000059089198,0.00025530267,0.000017799091,0.000002863697,0.0000069833122,0.00011835823,9.668098e-7,0.000114385824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9999056,0.000010627257,0.0000060407515,0.000027184586,0.00001673392,0.000033827957],"domain_scores_gemma":[0.99981946,0.000030228732,0.000055575503,0.00001242876,0.000029158344,0.00005316719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011487639,0.00018349444,0.0001454258,0.0004893913,0.00040035718,0.00022218999,0.00012249223,0.00048552896,0.00031070763],"category_scores_gemma":[0.00029182486,0.00016104795,0.00012851955,0.00013368018,0.0004299468,0.00015452271,0.00016423478,0.00020807407,0.00007790564],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024601998,0.00006633554,0.19584277,0.000078734316,0.000019753194,0.002514046,0.0006209143,0.000076733144,0.7969457,0.000062906285,0.000050624098,0.0034754255],"study_design_scores_gemma":[0.000012906902,0.00081200834,0.9729398,0.000014086233,0.000022481117,0.0065121786,0.0005051566,0.0002893574,0.018324537,0.000047465517,0.00051296747,0.0000071152285],"about_ca_topic_score_codex":0.0020288937,"about_ca_topic_score_gemma":0.003176046,"teacher_disagreement_score":0.0020288937,"about_ca_system_score_codex":0.00023312008,"about_ca_system_score_gemma":0.00014053947,"threshold_uncertainty_score":0.0040341616},"labels":[],"label_agreement":null},{"id":"W2124135506","doi":"10.1128/jcm.02291-06","title":"Real-Time PCR Assay for Rapid Detection and Analysis of PfCRT Haplotypes of Chloroquine-Resistant <i>Plasmodium falciparum</i> Isolates from India","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Ontario Genomics Institute; Genome Canada; Ontario Genomics; Pfizer","keywords":"Plasmodium falciparum; Haplotype; Chloroquine; Malaria; Biology; Drug resistance; Indian subcontinent; Virology; Apicomplexa; Genotype; Genetics; Gene; Immunology; Ancient history","score_opus":0.02489103361244627,"score_gpt":0.34152789681754214,"score_spread":0.3166368632050959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124135506","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.792148,0.00074452494,0.19496118,0.00018455404,0.00022370432,0.0014659314,0.002934186,0.0013024326,0.0060354713],"genre_scores_gemma":[0.6581061,0.0009995562,0.31638345,0.00041460866,0.000105419276,0.0036773789,0.012432239,0.00014587329,0.0077353935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853325,0.00033547534,0.0001595668,0.00044871555,0.00032524535,0.00019777687],"domain_scores_gemma":[0.99907696,0.00043568164,0.0001557444,0.00012497621,0.0001503359,0.00005624273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075590535,0.00087348797,0.0005413567,0.00067171146,0.00027158877,0.000400478,0.000885345,0.0004944439,0.0016417698],"category_scores_gemma":[0.001118443,0.00045953318,0.00049868866,0.0007234073,0.0005844346,0.0002794149,0.00032550347,0.0008298311,0.00047858228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021963881,0.00018409023,0.00462475,0.0001154605,0.000025946241,0.00011866663,0.0002183927,0.0003144057,0.9879772,0.00025744562,0.00025352728,0.0056905197],"study_design_scores_gemma":[0.00019720025,0.0026390373,0.05081459,0.00007084539,0.00015115672,0.0012658032,0.00036627403,0.014372212,0.91610324,0.00037842,0.013551974,0.00008927386],"about_ca_topic_score_codex":0.0011930605,"about_ca_topic_score_gemma":0.0019199573,"teacher_disagreement_score":0.0016417698,"about_ca_system_score_codex":0.00042832684,"about_ca_system_score_gemma":0.00045635004,"threshold_uncertainty_score":0.0054923296},"labels":[],"label_agreement":null},{"id":"W2124155120","doi":"10.1128/jcm.00681-08","title":"Rapid Method for Sensitive Screening of Oligosaccharide Epitopes in the Lipooligosaccharide from <i>Campylobacter jejuni</i> Strains Isolated from Guillain-Barre Syndrome and Miller Fisher Syndrome Patients","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Campylobacter jejuni; Glycan; Microbiology; Chromatography; RNase P; Mass spectrometry; Ganglioside; Multiplex; Chemistry; Biology; Bacteria; Biochemistry; Bioinformatics; Glycoprotein; RNA","score_opus":0.0399353842800383,"score_gpt":0.31705231221588165,"score_spread":0.27711692793584336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124155120","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46781522,0.015513375,0.49454978,0.0012314625,0.0007715767,0.0030514123,0.004457836,0.003055364,0.009553991],"genre_scores_gemma":[0.5151185,0.005858689,0.46341687,0.00085324794,0.00014181185,0.0026392858,0.005268533,0.00015402547,0.006549046],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988845,0.00026566107,0.00007823154,0.00026678684,0.00039602868,0.000108777625],"domain_scores_gemma":[0.9996075,0.000090563495,0.000069095455,0.0000450079,0.00013357855,0.000054296317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068728667,0.0012389366,0.0006076382,0.0017240363,0.00038679707,0.0004853221,0.00068429945,0.001083001,0.0014762924],"category_scores_gemma":[0.0008081887,0.0004903147,0.00038758252,0.0005442753,0.00034829997,0.00032673904,0.0007841603,0.0009818362,0.0014028556],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000111188114,0.00009275428,0.0016634923,0.00014695221,0.000022691127,0.00017874797,0.000049659677,0.00004917895,0.9826984,0.000090863745,0.00042108353,0.014475122],"study_design_scores_gemma":[0.00009391011,0.0009438274,0.027930154,0.00010626683,0.00015062827,0.004369857,0.00013873748,0.0039275656,0.94910604,0.00023077914,0.012922829,0.00007957136],"about_ca_topic_score_codex":0.0005436049,"about_ca_topic_score_gemma":0.0010038428,"teacher_disagreement_score":0.0017240363,"about_ca_system_score_codex":0.00027725802,"about_ca_system_score_gemma":0.00043108358,"threshold_uncertainty_score":0.004938662},"labels":[],"label_agreement":null},{"id":"W2124176727","doi":"10.1128/jcm.38.6.2403-2406.2000","title":"Epidemiologic Typing of <i>Salmonella enterica</i> Serotype Enteritidis in a Canada-Wide Outbreak of Gastroenteritis due to Contaminated Cheese","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Serotype; Salmonella enteritidis; Outbreak; Phage typing; Microbiology; Typing; Salmonella enterica; Biology; Salmonella Food Poisoning; Virology; Pulsed-field gel electrophoresis; Salmonella; Food microbiology; Bacteria; Genotype; Genetics","score_opus":0.019186535083281147,"score_gpt":0.2934875957095491,"score_spread":0.2743010606262679,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124176727","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986866,0.00008582941,0.0001022275,0.000056210138,0.0000030394217,0.000029643157,0.00025961577,0.000006646265,0.0007701704],"genre_scores_gemma":[0.9985838,0.00018677412,0.00027913816,0.00006902166,0.0000041068074,0.000007598551,0.00051561213,0.0000028334607,0.00035133434],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940455,0.000042812793,0.00003119498,0.000079930775,0.0002477024,0.00019382662],"domain_scores_gemma":[0.99881315,0.000060251725,0.00019722761,0.0000316889,0.00058165006,0.00031614205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004300228,0.00041945936,0.00023772048,0.0011052208,0.0012423819,0.0009278366,0.00039724962,0.00037173502,0.00048342836],"category_scores_gemma":[0.0010989974,0.00032384993,0.00021787324,0.0015116703,0.0008674126,0.00014909885,0.00043733837,0.00063690793,0.00010059249],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038958256,0.00014964463,0.9687353,0.000052056093,0.00004924212,0.0016047509,0.0016066894,0.0002112845,0.023267787,0.000084310894,0.00064221903,0.0032071122],"study_design_scores_gemma":[0.0000053257977,0.000100756624,0.99594194,0.000013096145,0.00002165291,0.0006202244,0.0012332693,0.00014727714,0.0013312419,0.000008261273,0.00056978286,0.000007166931],"about_ca_topic_score_codex":0.84711397,"about_ca_topic_score_gemma":0.8755865,"teacher_disagreement_score":0.15288603,"about_ca_system_score_codex":0.0052984837,"about_ca_system_score_gemma":0.0071543874,"threshold_uncertainty_score":0.30757278},"labels":[],"label_agreement":null},{"id":"W2124381370","doi":"10.1128/jcm.05195-11","title":"Canadian Multicenter Laboratory Study for Standardized Second-Line Antimicrobial Susceptibility Testing of Mycobacterium tuberculosis","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health; Public Health Ontario; Public Health Agency of Canada; Toronto Public Health; Institut National de Santé Publique du Québec; University of Manitoba","funders":"Pfizer","keywords":"Capreomycin; Ethionamide; Mycobacterium tuberculosis; Amikacin; Rifabutin; Moxifloxacin; Microbiology; Tuberculosis; Antimicrobial; Ofloxacin; Medicine; Antibiotics; Ethambutol; Biology; Ciprofloxacin; Pathology; Clarithromycin","score_opus":0.08730723869001036,"score_gpt":0.38163353977576386,"score_spread":0.29432630108575353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124381370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9237157,0.0052154954,0.01191198,0.0031586883,0.00049419905,0.013915848,0.014085927,0.00038705245,0.027115064],"genre_scores_gemma":[0.9741355,0.0009420224,0.011363967,0.0017354722,0.00013243148,0.0027542312,0.00625441,0.00006567423,0.0026162623],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98561656,0.004175162,0.00072387763,0.0013190577,0.0069040623,0.0012612027],"domain_scores_gemma":[0.98680043,0.000846443,0.0019145546,0.0010867575,0.007864787,0.0014870351],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008844441,0.000878388,0.00082947814,0.0011801246,0.0034919658,0.0012824641,0.0019089909,0.0009839175,0.0031957885],"category_scores_gemma":[0.012851346,0.00060643395,0.00067829643,0.0027501134,0.00097129383,0.0004896022,0.0009850585,0.0011573518,0.00049176946],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048771603,0.001990596,0.92290354,0.00056011765,0.000692264,0.0007472043,0.001186291,0.000606982,0.0065997452,0.0028001277,0.02144373,0.035592213],"study_design_scores_gemma":[0.0016990134,0.0023391922,0.96585196,0.00011147854,0.00027665743,0.00075739645,0.00048096382,0.001050314,0.0015609488,0.00014787252,0.025657592,0.00006660466],"about_ca_topic_score_codex":0.7680346,"about_ca_topic_score_gemma":0.80107605,"teacher_disagreement_score":0.23196542,"about_ca_system_score_codex":0.018133702,"about_ca_system_score_gemma":0.03856909,"threshold_uncertainty_score":0.466663},"labels":[],"label_agreement":null},{"id":"W2124622194","doi":"10.1128/jcm.38.11.4034-4041.2000","title":"Multicenter Comparison of Roche COBAS AMPLICOR MONITOR Version 1.5, Organon Teknika NucliSens QT with Extractor, and Bayer Quantiplex Version 3.0 for Quantification of Human Immunodeficiency Virus Type 1 RNA in Plasma","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec; Université de Montréal","funders":"","keywords":"BDNA test; Virology; Viral load; Human immunodeficiency virus (HIV); Coefficient of variation; Extractor; Lentivirus; Biology; Medicine; Viral disease; Chemistry; Chromatography","score_opus":0.06599093659823034,"score_gpt":0.3913068832092665,"score_spread":0.32531594661103613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124622194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926065,0.0020911908,0.0032701092,0.00009979482,0.00009235314,0.00070512574,0.0003933357,0.00010916754,0.0006324845],"genre_scores_gemma":[0.9892252,0.00036732442,0.0076907985,0.00016236979,0.000075751814,0.000850991,0.0010729511,0.000053635405,0.0005010453],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.9847771,0.009862713,0.00060000207,0.0025517896,0.0018869401,0.00032146502],"domain_scores_gemma":[0.98937666,0.0034244999,0.002531636,0.0016285488,0.0020157513,0.0010228609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0233804,0.0014651304,0.00095962756,0.00063915947,0.00033248033,0.0010254243,0.0010779707,0.001336516,0.0008928627],"category_scores_gemma":[0.015898453,0.0009383744,0.00064384146,0.0007978194,0.0010752124,0.0010922415,0.0005928868,0.0009813776,0.0003856351],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6200478,0.011265443,0.19205284,0.00059780944,0.0030543648,0.00014541394,0.0013508702,0.00340896,0.06337236,0.0009000625,0.0031118607,0.100692295],"study_design_scores_gemma":[0.08507178,0.40231705,0.44989443,0.00016835365,0.0029781822,0.0012210459,0.00032352103,0.015504659,0.03510975,0.000644305,0.0065406514,0.00022634871],"about_ca_topic_score_codex":0.0006867952,"about_ca_topic_score_gemma":0.0008627853,"teacher_disagreement_score":0.0233804,"about_ca_system_score_codex":0.0007749164,"about_ca_system_score_gemma":0.000899228,"threshold_uncertainty_score":0.12364882},"labels":[],"label_agreement":null},{"id":"W2124704272","doi":"10.1128/jcm.41.10.4578-4582.2003","title":"Association between Handling of Pet Treats and Infection with <i>Salmonella enterica</i> Serotype Newport Expressing the AmpC β-Lactamase, CMY-2","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Provincial Laboratory of Public Health; Canadian Science Centre for Human and Animal Health; Health Canada; Calgary Laboratory Services; University of Alberta; University of Calgary","funders":"University of Calgary","keywords":"Microbiology; Salmonella enterica; Biology; Cefotaxime; Cefepime; Ceftazidime; Serotype; Salmonella; Virology; Cephalosporin; Cefoxitin; Ciprofloxacin; Ampicillin; Imipenem; Plasmid; Antibiotic resistance; Antibiotics; Bacteria; Pseudomonas aeruginosa; Gene; Genetics","score_opus":0.02149985535658258,"score_gpt":0.3110781661706789,"score_spread":0.28957831081409635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124704272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99941874,0.000088702975,0.000080434984,0.00003640956,0.0000055210267,0.000005483634,0.00003651698,0.000006165133,0.00032204602],"genre_scores_gemma":[0.99955815,0.000056487683,0.00009402021,0.000026258767,0.000008220676,0.0000026189102,0.00007166309,0.0000028574289,0.00017983552],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996012,0.000060107614,0.00003520111,0.000086044194,0.00009543554,0.00012202854],"domain_scores_gemma":[0.9982868,0.00024370095,0.0008473128,0.00009838148,0.0002494233,0.00027440567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021712274,0.0005784977,0.0002725402,0.00045620347,0.00074133597,0.00059125596,0.0003991113,0.0006052877,0.0019434486],"category_scores_gemma":[0.0013808663,0.0004662297,0.00030212998,0.0004890078,0.0006642507,0.00026174024,0.0003710788,0.00086637435,0.00018005529],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017985207,0.00006391142,0.994284,0.00001611531,0.000028391914,0.002061795,0.000230033,0.00004875186,0.0016736868,0.000013102254,0.00019269236,0.0012075456],"study_design_scores_gemma":[0.000008010884,0.00041084766,0.9870812,0.000013014512,0.00003757117,0.01059545,0.00073221955,0.0002140156,0.0004908064,0.000011464276,0.00039641856,0.000008991551],"about_ca_topic_score_codex":0.042651154,"about_ca_topic_score_gemma":0.039651576,"teacher_disagreement_score":0.042651154,"about_ca_system_score_codex":0.00095657556,"about_ca_system_score_gemma":0.00085502554,"threshold_uncertainty_score":0.08480579},"labels":[],"label_agreement":null},{"id":"W2124995458","doi":"10.1128/jcm.38.1.268-273.2000","title":"Etiology of Genital Ulcer Disease in Dakar, Senegal, and Comparison of PCR and Serologic Assays for Detection of <i>Haemophilus ducreyi</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital","funders":"National Cancer Institute","keywords":"Haemophilus ducreyi; Serology; Genital ulcer; Chancroid; Virology; GroEL; Sexually transmitted disease; Polymerase chain reaction; Biology; Microbiology; Antibody; Medicine; Pasteurellaceae; Immunology; Haemophilus influenzae; Syphilis; Gene","score_opus":0.06410218642399518,"score_gpt":0.3903012007612401,"score_spread":0.3261990143372449,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124995458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992711,0.00024975327,0.000023538472,0.00003449438,0.0000037006414,0.0000087114195,0.000123949,0.000002096411,0.00028267902],"genre_scores_gemma":[0.9992411,0.0002525873,0.00011571605,0.00007353746,0.0000045589327,0.000015389496,0.00020023536,0.0000017099782,0.00009528433],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950707,0.00015103203,0.000060671737,0.000083622544,0.00007620341,0.000121362864],"domain_scores_gemma":[0.9993855,0.00012743237,0.00022785146,0.000035124707,0.00010015301,0.00012379553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042494858,0.00060823245,0.00026648297,0.0014945399,0.0006298931,0.0007054913,0.00043012676,0.00037455757,0.0010283818],"category_scores_gemma":[0.0013474771,0.0005980859,0.00024124153,0.0010244133,0.00095484586,0.00044619158,0.00080774026,0.00035083437,0.000259798],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010836979,0.000045866447,0.99262106,0.000049677,0.000037358954,0.0012935554,0.0004445607,0.00005118548,0.002903706,0.000016616099,0.00006956367,0.0023584424],"study_design_scores_gemma":[0.000019910543,0.00015885558,0.99320316,0.000016929265,0.000029254774,0.004191882,0.0015312443,0.0001042481,0.0004019671,0.000013343298,0.00031958107,0.0000096396225],"about_ca_topic_score_codex":0.030085152,"about_ca_topic_score_gemma":0.05825419,"teacher_disagreement_score":0.030085152,"about_ca_system_score_codex":0.0009304238,"about_ca_system_score_gemma":0.0006545534,"threshold_uncertainty_score":0.059820056},"labels":[],"label_agreement":null},{"id":"W2125352108","doi":"10.1128/jcm.44.2.423-432.2006","title":"Real-Time PCR Quantification of Genital Shedding of Herpes Simplex Virus (HSV) and Human Immunodeficiency Virus (HIV) in Women Coinfected with HSV and HIV","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Institut National de la Santé et de la Recherche Médicale; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Herpes simplex virus; Virology; Real-time polymerase chain reaction; Biology; Primer (cosmetics); Polymerase chain reaction; Virus; Genotype; HSL and HSV; Viral shedding; Sexually transmitted disease; Human immunodeficiency virus (HIV); Gene; Syphilis; Chemistry; Genetics","score_opus":0.02247350299849416,"score_gpt":0.3356231508552007,"score_spread":0.31314964785670657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125352108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6467715,0.009878932,0.3250241,0.00040014612,0.00084851217,0.0032083588,0.004517505,0.0023528526,0.0069980533],"genre_scores_gemma":[0.5072088,0.0023908813,0.47280678,0.0005649585,0.00020158204,0.007273437,0.003306746,0.00022488915,0.0060218833],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.98855406,0.004087585,0.00075835217,0.003232103,0.0028272837,0.0005405488],"domain_scores_gemma":[0.99494594,0.002522941,0.00079210335,0.0004518887,0.0011673729,0.00011983895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006244167,0.0012021792,0.0014924699,0.0017756713,0.0003974112,0.0018699595,0.0017622119,0.0013318318,0.0022111866],"category_scores_gemma":[0.007888923,0.00086691685,0.0007725695,0.0017049318,0.0013890801,0.00088588806,0.000721448,0.0017286926,0.0007688514],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002834789,0.0009616482,0.03823998,0.0011447857,0.0002533413,0.00028740973,0.0016599587,0.0027050248,0.8921593,0.0012356535,0.0011905397,0.05732761],"study_design_scores_gemma":[0.00044749255,0.005007814,0.0561885,0.00034536948,0.00048106222,0.0017365739,0.00085047586,0.061098773,0.8517979,0.0015840392,0.020162161,0.00029974245],"about_ca_topic_score_codex":0.0004746108,"about_ca_topic_score_gemma":0.00069765403,"teacher_disagreement_score":0.006244167,"about_ca_system_score_codex":0.0007917895,"about_ca_system_score_gemma":0.0007796431,"threshold_uncertainty_score":0.0330227},"labels":[],"label_agreement":null},{"id":"W2125662632","doi":"10.1128/jcm.39.2.596-600.2001","title":"Circulating Nucleic Acids of <i>Chlamydia pneumoniae</i> and Cytomegalovirus in Patients Undergoing Coronary Angiography","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"Heart and Stroke Foundation of Canada","keywords":"Chlamydia; Medicine; Cytomegalovirus; Serology; Odds ratio; Angioplasty; Human cytomegalovirus; Internal medicine; Chlamydiaceae; Chlamydophila pneumoniae; Cardiology; Gastroenterology; Pathology; Immunology; Antibody; Herpesviridae; Virus; Viral disease","score_opus":0.03709469004378314,"score_gpt":0.3485016640002185,"score_spread":0.31140697395643535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125662632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99955434,0.00018742998,0.000031522122,0.000025142055,0.000005314019,0.00000396272,0.00003103848,0.0000021341805,0.00015909388],"genre_scores_gemma":[0.9996456,0.000108043016,0.000056424404,0.00003173446,0.000021683392,0.0000063039115,0.00006295228,9.552091e-7,0.00006630848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995845,0.00010333623,0.00004788572,0.00007068012,0.0000795902,0.000114020324],"domain_scores_gemma":[0.9981078,0.0007434685,0.0005392822,0.00007117918,0.000113800095,0.000424614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037548406,0.0002742535,0.0005194086,0.00065087544,0.0004690972,0.0005425329,0.00020270304,0.0007073645,0.0012021133],"category_scores_gemma":[0.0039364896,0.00044561946,0.00021965851,0.0004983499,0.0004645302,0.00038599366,0.00024852328,0.00060556905,0.00020457771],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038681593,0.000044539094,0.9969957,0.000010701889,0.000017005354,0.000538336,0.00011148954,0.000020626621,0.0006658116,0.000011596423,0.00006424575,0.001133084],"study_design_scores_gemma":[0.0000428193,0.0005813262,0.99546105,0.000013937644,0.000040493047,0.0030121685,0.00025090334,0.00015988879,0.00024081116,0.000031858373,0.0001556246,0.000009261612],"about_ca_topic_score_codex":0.0022914512,"about_ca_topic_score_gemma":0.0019505203,"teacher_disagreement_score":0.0022914512,"about_ca_system_score_codex":0.00027215306,"about_ca_system_score_gemma":0.00029697805,"threshold_uncertainty_score":0.004556179},"labels":[],"label_agreement":null},{"id":"W2125691583","doi":"10.1128/jcm.01666-07","title":"Detection of Pathogenic Protozoa in the Diagnostic Laboratory: Result Reproducibility, Specimen Pooling, and Competency Assessment","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Montreal General Hospital","funders":"","keywords":"Concordance; Biology; Parasitology; Reproducibility; Protozoa; Entamoeba histolytica; Quality assurance; Medicine; Pathology; Microbiology; External quality assessment; Bioinformatics; Statistics; Mathematics","score_opus":0.04289045232575167,"score_gpt":0.3546787965468063,"score_spread":0.3117883442210546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125691583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"reproducibility","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"reproducibility","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7184862,0.0022994129,0.2695243,0.00088517676,0.000118437885,0.0022021567,0.00029447503,0.00093204237,0.005257785],"genre_scores_gemma":[0.80659586,0.00034855652,0.19109058,0.00018631993,0.000074469106,0.0005242998,0.0003491131,0.00011254465,0.0007182338],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.90506816,0.04582629,0.01220022,0.006087519,0.029252797,0.0015649698],"domain_scores_gemma":[0.91095483,0.041690163,0.010670655,0.015063588,0.020233633,0.0013870478],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.09327228,0.0011925863,0.0014888771,0.0034749433,0.0011744603,0.002632584,0.0020197039,0.0012755048,0.00052423443],"category_scores_gemma":[0.119834624,0.0007136328,0.0010341273,0.0017788429,0.0024987806,0.001679435,0.0026922238,0.0008276662,0.0005867727],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002245476,0.0010290407,0.52329844,0.0011998112,0.0007092266,0.00084120705,0.0046834922,0.0035866112,0.18952353,0.0013045955,0.00089650106,0.27068207],"study_design_scores_gemma":[0.00010426689,0.005430441,0.38639146,0.00027873158,0.00085805566,0.0052991007,0.0014268559,0.03564848,0.5580314,0.0021119677,0.004034022,0.00038533655],"about_ca_topic_score_codex":0.0025072456,"about_ca_topic_score_gemma":0.002283921,"teacher_disagreement_score":0.90672773,"about_ca_system_score_codex":0.0012255891,"about_ca_system_score_gemma":0.0020417054,"threshold_uncertainty_score":0.4932769},"labels":[],"label_agreement":null},{"id":"W2125737690","doi":"10.1128/jcm.01818-07","title":"Elucidating Global Epidemiology of <i>Burkholderia multivorans</i> in Cases of Cystic Fibrosis by Multilocus Sequence Typing","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of Oxford; Wellcome Trust; Cystic Fibrosis Trust; Cystic Fibrosis Foundation","keywords":"Multilocus sequence typing; Burkholderia cepacia complex; Biology; Outbreak; Microbiology; Typing; Virology; Genetics; Genotype; Burkholderia; Bacteria; Gene","score_opus":0.10312725835323115,"score_gpt":0.4738840980096882,"score_spread":0.37075683965645706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125737690","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99852437,0.00024241529,0.00048694518,0.000037269514,0.0000034764212,0.000016694225,0.00014295126,0.0000047824046,0.0005410799],"genre_scores_gemma":[0.9991923,0.00020914295,0.0003515114,0.0000203553,0.000007452575,0.0000040075047,0.00016309193,0.0000031372278,0.000048950023],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963725,0.00008544415,0.000043866254,0.000094756266,0.00004634875,0.000092365124],"domain_scores_gemma":[0.99954754,0.00009417113,0.00016449319,0.000033316795,0.00007348016,0.000087005814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005308373,0.00033533992,0.0002744654,0.001466876,0.00029918703,0.0006251098,0.00024077714,0.00038381648,0.0005037364],"category_scores_gemma":[0.0010138265,0.00021693442,0.00023110442,0.00087158737,0.00039009348,0.00071656285,0.00055539625,0.00032575338,0.00010105821],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048663544,0.000012773935,0.9942667,0.00001511455,0.00001687192,0.0006208856,0.0003134776,0.00006340039,0.00279016,0.000025128951,0.00005462276,0.0017722527],"study_design_scores_gemma":[0.000002812272,0.00011011945,0.9942234,0.000019687111,0.00003566137,0.0024776855,0.001426057,0.0004201802,0.0008415618,0.000050282102,0.0003865759,0.0000060120396],"about_ca_topic_score_codex":0.0062974407,"about_ca_topic_score_gemma":0.005878719,"teacher_disagreement_score":0.0062974407,"about_ca_system_score_codex":0.00026589137,"about_ca_system_score_gemma":0.00018959245,"threshold_uncertainty_score":0.012521565},"labels":[],"label_agreement":null},{"id":"W2125795878","doi":"10.1128/jcm.01044-06","title":"Detection of Human Bocavirus in Canadian Children in a 1-Year Study","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Stollery Children's Hospital; University of Alberta; Public Health Agency of Canada","funders":"","keywords":"Human bocavirus; Croup; Bronchiolitis; Pneumonia; Medicine; Pediatrics; Respiratory sounds; Virology; Respiratory system; Respiratory illness; Respiratory disease; Rhinovirus; Respiratory tract infections; Immunology; Asthma; Virus; Internal medicine; Lung","score_opus":0.06743751830803245,"score_gpt":0.453687346505619,"score_spread":0.3862498281975865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125795878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788374,0.00031365574,0.00005836929,0.00013096207,0.000011396334,0.000027971993,0.0006170276,0.0000061109527,0.00095070724],"genre_scores_gemma":[0.99848074,0.00042168135,0.00012163466,0.00013328946,0.0000070677756,0.000013421597,0.00045452334,0.0000034980587,0.00036408642],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99860185,0.00006651779,0.000049708182,0.00019877244,0.0005182241,0.00056486705],"domain_scores_gemma":[0.9982906,0.00006894122,0.00021380886,0.00003627778,0.0009878222,0.00040240734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075443694,0.0006124329,0.0006243426,0.0014516996,0.0038705468,0.0012258313,0.00084195053,0.00083563355,0.00090944575],"category_scores_gemma":[0.0020200652,0.00074305997,0.000542148,0.0024180894,0.0012274501,0.0004991583,0.00054673257,0.0011281784,0.00022625654],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007622147,0.000050925453,0.99530137,0.000024191308,0.00002382648,0.0003518903,0.0014500292,0.000036606285,0.00075614,0.000023634568,0.00037661847,0.0015286048],"study_design_scores_gemma":[0.00000515679,0.00007255673,0.99746597,0.000013347585,0.000018391478,0.0003082398,0.0013564472,0.000055283224,0.000085714535,0.000005041399,0.00060461636,0.000009175998],"about_ca_topic_score_codex":0.9771573,"about_ca_topic_score_gemma":0.98196304,"teacher_disagreement_score":0.022842705,"about_ca_system_score_codex":0.01614975,"about_ca_system_score_gemma":0.015252918,"threshold_uncertainty_score":0.11717522},"labels":[],"label_agreement":null},{"id":"W2125921329","doi":"10.1128/jcm.01893-06","title":"Rapid Molecular Strategy for Filovirus Detection and Characterization","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Ellison Medical Foundation","keywords":"Ebolavirus; Virology; Biology; Ebola virus; Phylogenetic tree; Computational biology; Sequence analysis; Outbreak; Genetics; Gene","score_opus":0.04864494968961368,"score_gpt":0.3669544366428758,"score_spread":0.3183094869532621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125921329","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1570311,0.0022670485,0.8318413,0.00044465758,0.0003155412,0.000803178,0.0012172472,0.002378518,0.0037014605],"genre_scores_gemma":[0.23769407,0.0018303682,0.74674225,0.00040758937,0.00012396571,0.0011739206,0.004901483,0.00026168293,0.0068647675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986841,0.00028983326,0.00007350503,0.0003401993,0.00046095953,0.00015147967],"domain_scores_gemma":[0.99879324,0.00042846944,0.00014274327,0.00020555324,0.000303999,0.00012592833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009149431,0.0012517101,0.00087839516,0.0013645848,0.00047431525,0.00063846813,0.0009850439,0.001059747,0.0032345548],"category_scores_gemma":[0.0014135736,0.0005973769,0.00055783836,0.00031702846,0.0006113324,0.0007304195,0.00064309203,0.0022675951,0.0036109313],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003691412,0.00003476688,0.00015600363,0.00006788769,0.000006509233,0.000039318267,0.00002022694,0.00006464706,0.9907528,0.00026880283,0.00021903968,0.008332987],"study_design_scores_gemma":[0.000026701216,0.00023573554,0.0008332934,0.000023340777,0.000029527942,0.00058657705,0.000034668778,0.0036651418,0.98628145,0.00037911686,0.007878306,0.000026109936],"about_ca_topic_score_codex":0.00045316908,"about_ca_topic_score_gemma":0.00080224103,"teacher_disagreement_score":0.0032345548,"about_ca_system_score_codex":0.0004263759,"about_ca_system_score_gemma":0.00059184455,"threshold_uncertainty_score":0.010820687},"labels":[],"label_agreement":null},{"id":"W2126006315","doi":"10.1128/jcm.38.2.910-913.2000","title":"Diagnostically and Experimentally Useful Panel of Strains from the <i>Burkholderia cepacia</i> Complex","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":326,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Burkholderia cepacia complex; Burkholderia; Microbiology; Burkholderia cenocepacia; Biology; Virulence; Identification (biology); Bacteria; Genetics; Ecology","score_opus":0.11460088208911613,"score_gpt":0.41351622182586484,"score_spread":0.2989153397367487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126006315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98936135,0.0006094827,0.006442638,0.00012118021,0.0000356721,0.00028265404,0.0019146372,0.000079925994,0.0011525099],"genre_scores_gemma":[0.9604994,0.0007630514,0.025724709,0.00024997944,0.000031179272,0.00028493494,0.01171849,0.000024992685,0.0007032898],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999035,0.00025489068,0.000105300765,0.00022827083,0.00021220076,0.00016438971],"domain_scores_gemma":[0.9995567,0.00012388254,0.000069772235,0.00006282469,0.000094051284,0.00009272482],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055874593,0.0006504249,0.0003811631,0.00074674946,0.00031825824,0.00033723866,0.00027342353,0.00042873656,0.0005004761],"category_scores_gemma":[0.0006948741,0.00020676345,0.0002506595,0.00047145694,0.00027383678,0.00024316051,0.00051381614,0.0005391234,0.00028731307],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015229352,0.00026710125,0.00933915,0.000051005467,0.000011646037,0.00011730535,0.000051025272,0.00018187401,0.98707867,0.00005328892,0.00010531442,0.0025913608],"study_design_scores_gemma":[0.00008173931,0.004320036,0.08941428,0.000041806124,0.0001606481,0.0025955813,0.00035077994,0.0015518934,0.8949937,0.0002297003,0.006223982,0.00003584099],"about_ca_topic_score_codex":0.0014600653,"about_ca_topic_score_gemma":0.0024026132,"teacher_disagreement_score":0.0014600653,"about_ca_system_score_codex":0.00019909085,"about_ca_system_score_gemma":0.00031992776,"threshold_uncertainty_score":0.0029549599},"labels":[],"label_agreement":null},{"id":"W2126059793","doi":"10.1128/jcm.01807-08","title":"Multiplex Assay for Simultaneously Typing and Subtyping Influenza Viruses by Use of an Electronic Microarray","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Université Laval","keywords":"Subtyping; Typing; Virology; Virus; Influenza A virus; Influenza A virus subtype H5N1; Biology; Multiplex; Microarray; H5N1 genetic structure; Gene; Microbiology; Genetics; Gene expression; Medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.203078353311226,"score_gpt":0.45536757298645164,"score_spread":0.25228921967522566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126059793","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24288523,0.0074673267,0.72947574,0.0006035981,0.0012811654,0.00088607887,0.0027779788,0.0032596036,0.011363293],"genre_scores_gemma":[0.32114515,0.0036907368,0.65869844,0.0005868493,0.00050050806,0.0014981806,0.0030924224,0.0000741318,0.010713724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99770325,0.0005747287,0.00012468042,0.00056271313,0.0008843312,0.00015040477],"domain_scores_gemma":[0.9989241,0.00046540765,0.00012604216,0.00015126675,0.00023505144,0.00009821258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016129115,0.0010899361,0.00054894446,0.0014301798,0.00034393338,0.00088574283,0.0009159218,0.0009514178,0.0020332993],"category_scores_gemma":[0.0014519466,0.00038899746,0.0004273315,0.00074421795,0.00039932824,0.00083054195,0.00076300354,0.00083335815,0.0014534503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034700258,0.00033697352,0.0047214814,0.0002452734,0.000073122006,0.00011739562,0.00008790806,0.00094741234,0.9247802,0.0009651563,0.0022684615,0.06510956],"study_design_scores_gemma":[0.000045888573,0.0014023482,0.00788011,0.000052768435,0.00013031262,0.0016091453,0.0000713413,0.024982935,0.93651634,0.0007423818,0.02648121,0.00008520232],"about_ca_topic_score_codex":0.00017680212,"about_ca_topic_score_gemma":0.00023870688,"teacher_disagreement_score":0.0020332993,"about_ca_system_score_codex":0.00030530585,"about_ca_system_score_gemma":0.00016099836,"threshold_uncertainty_score":0.008530021},"labels":[],"label_agreement":null},{"id":"W2126117815","doi":"10.1128/jcm.41.3.1256-1258.2003","title":"Detection and Species-Level Identification of Primate Herpesviruses with a Comprehensive PCR Test for Human Herpesviruses","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Hospital for Sick Children","funders":"","keywords":"Biology; Virology; Cytomegalovirus; Identification (biology); Herpesviridae; Human cytomegalovirus; Betaherpesvirinae; Virus; Herpesviridae Infections; Viral disease; Ecology","score_opus":0.10718751562332049,"score_gpt":0.39477501291538397,"score_spread":0.28758749729206345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126117815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89288557,0.004643932,0.09385834,0.0001507107,0.00007302908,0.0013863071,0.001300831,0.0006781907,0.005023099],"genre_scores_gemma":[0.8029172,0.0030456001,0.1864153,0.0003724389,0.0000700324,0.0013409698,0.0027598143,0.000058185335,0.0030205175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984127,0.000334683,0.00013495052,0.00045855987,0.00044062952,0.00021840427],"domain_scores_gemma":[0.998869,0.00036855217,0.00013816093,0.000109909946,0.0003526408,0.00016169756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014985757,0.00074256305,0.0006972134,0.0015314346,0.00038885063,0.00052055967,0.0004668378,0.00062710256,0.0014219134],"category_scores_gemma":[0.0022061877,0.00046081052,0.000418421,0.0006512412,0.00045386577,0.0004309548,0.0007081058,0.0007429067,0.0005379443],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002478475,0.0001290323,0.020983003,0.00017087319,0.00006740474,0.0001999658,0.00042783102,0.00039012788,0.95194197,0.00028135924,0.00030773663,0.02485284],"study_design_scores_gemma":[0.000075379256,0.0041548917,0.1728197,0.00020734585,0.00037096778,0.007056969,0.0006024216,0.0069179353,0.7936825,0.0007502128,0.013227907,0.00013377504],"about_ca_topic_score_codex":0.0009063964,"about_ca_topic_score_gemma":0.001827816,"teacher_disagreement_score":0.0015314346,"about_ca_system_score_codex":0.00017942359,"about_ca_system_score_gemma":0.0005538769,"threshold_uncertainty_score":0.007925332},"labels":[],"label_agreement":null},{"id":"W2126183097","doi":"10.1128/jcm.00502-11","title":"Rapid Identification of Cryptococcus neoformans var. grubii, C. neoformans var. neoformans, and C. gattii by Use of Rapid Biochemical Tests, Differential Media, and DNA Sequencing","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Hospital for Sick Children; BC Centre for Disease Control; University of Toronto; Toronto Public Health","funders":"","keywords":"Cryptococcus neoformans; Cryptococcus gattii; Biology; Cryptococcosis; Microbiology; Cryptococcus; Agar; Genetics; Bacteria","score_opus":0.0833645888125776,"score_gpt":0.32291019001091825,"score_spread":0.23954560119834065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126183097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98283434,0.0007379535,0.0132110715,0.000135379,0.00002078521,0.0003280131,0.00053893815,0.00013986445,0.0020537197],"genre_scores_gemma":[0.92385703,0.00073876657,0.07317528,0.00015421605,0.000016051896,0.000103324965,0.001060636,0.000022563974,0.0008721317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999183,0.00015176261,0.00011397453,0.0001467585,0.00032578895,0.00007868342],"domain_scores_gemma":[0.99880135,0.0003525078,0.00025641124,0.00008276705,0.00039282264,0.00011415057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010992253,0.00065069896,0.00036434128,0.0018842384,0.00029694973,0.0004824768,0.00040547943,0.00040766306,0.000628671],"category_scores_gemma":[0.002525392,0.00022641948,0.00025693464,0.0007554251,0.0003560438,0.0005063147,0.0004448468,0.0002573193,0.00024959803],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007890343,0.00030737685,0.34957394,0.00031208177,0.000053470412,0.00070796534,0.00029096112,0.0014160217,0.52454114,0.0002555981,0.00040748555,0.121345036],"study_design_scores_gemma":[0.00006802132,0.0024468277,0.57972866,0.00016111926,0.00012515127,0.007786087,0.0009739103,0.018146778,0.38431594,0.0004900801,0.00568636,0.00007104961],"about_ca_topic_score_codex":0.0070810434,"about_ca_topic_score_gemma":0.013551736,"teacher_disagreement_score":0.0070810434,"about_ca_system_score_codex":0.0003949237,"about_ca_system_score_gemma":0.00049646426,"threshold_uncertainty_score":0.01407963},"labels":[],"label_agreement":null},{"id":"W2126377514","doi":"10.1128/jcm.43.3.1105-1111.2005","title":"Role of Real-Time Molecular Typing in the Surveillance of <i>Campylobacter</i> Enteritis and Comparison of Pulsed-Field Gel Electrophoresis Profiles from Chicken and Human Isolates","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Nunavik Regional Board of Health and Social Services; Université de Sherbrooke","funders":"Ministère de la Santé et des Services sociaux","keywords":"Typing; Biology; Campylobacteriosis; Campylobacter; Genotype; Outbreak; Molecular epidemiology; Pulsed-field gel electrophoresis; Multilocus sequence typing; Enteritis; Microbiology; Veterinary medicine; Virology; Genetics; Medicine; Gene; Bacteria","score_opus":0.01785534646321639,"score_gpt":0.30432002461883484,"score_spread":0.28646467815561844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126377514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99123365,0.002398974,0.005390921,0.00025596976,0.00003902817,0.00003281688,0.00010423961,0.000053248055,0.00049119734],"genre_scores_gemma":[0.9895397,0.00041946635,0.009717314,0.00007318763,0.00003717744,0.000015465677,0.00010316682,0.0000048771867,0.00008963237],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9966948,0.0022132962,0.0001846988,0.00048928364,0.00029848432,0.000119422584],"domain_scores_gemma":[0.9919085,0.005504333,0.0013710709,0.00044829445,0.000496203,0.00027162884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0050100586,0.0004140074,0.00029121593,0.0008308633,0.0001377585,0.0010588821,0.000463729,0.0007555068,0.00033778453],"category_scores_gemma":[0.0125419265,0.0002191159,0.00015046235,0.0004293368,0.00055644754,0.0005383357,0.00020377524,0.0003892393,0.000174728],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004581136,0.0003021888,0.7326223,0.00047869238,0.000071911,0.00046059242,0.000960523,0.0023098644,0.12696877,0.00021071015,0.00030800042,0.13072519],"study_design_scores_gemma":[0.00015892393,0.007170426,0.85981476,0.0003173006,0.00035808547,0.008389977,0.0016214091,0.028407365,0.08881485,0.00055211666,0.0042365007,0.00015830722],"about_ca_topic_score_codex":0.00077127997,"about_ca_topic_score_gemma":0.0005787668,"teacher_disagreement_score":0.0050100586,"about_ca_system_score_codex":0.00028938593,"about_ca_system_score_gemma":0.00026180863,"threshold_uncertainty_score":0.026495993},"labels":[],"label_agreement":null},{"id":"W2126540136","doi":"10.1128/jcm.38.4.1575-1580.2000","title":"A Novel Multiresistant <i>Streptococcus pneumoniae</i> Serogroup 19 Clone from Washington State Identified by Pulsed-Field Gel Electrophoresis and Restriction Fragment Length Patterns","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Wellcome Trust","keywords":"Pulsed-field gel electrophoresis; Restriction fragment length polymorphism; Streptococcus pneumoniae; Biology; clone (Java method); Microbiology; Restriction enzyme; Penicillin; Gel electrophoresis; Molecular epidemiology; Restriction fragment; Genotype; Erythromycin; Pneumococcal infections; Antibacterial agent; Genetics; Antibiotics; Gene","score_opus":0.018872821014462256,"score_gpt":0.3165081144399787,"score_spread":0.2976352934255165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126540136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99893945,0.00010576914,0.0004004399,0.000021757613,0.000007667913,0.000023545139,0.00006769598,0.0000071033433,0.00042665715],"genre_scores_gemma":[0.9981641,0.000161841,0.0008750612,0.00004671911,0.000011401449,0.000012226079,0.00026887993,0.000003831257,0.00045590298],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99981886,0.000016054271,0.000026914322,0.000054565917,0.000041472227,0.000042104315],"domain_scores_gemma":[0.9995939,0.000061580715,0.00013999241,0.000034457218,0.00007485383,0.00009525036],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001047103,0.00039862233,0.00027407135,0.0005697099,0.000715823,0.00054932706,0.00021118086,0.000507857,0.0007280754],"category_scores_gemma":[0.0005685209,0.000297195,0.0002127796,0.0003714573,0.00034254757,0.00019058787,0.0002359553,0.00043458288,0.00017125365],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059635495,0.00025956938,0.7376038,0.00016050506,0.00007361026,0.03180426,0.0026214768,0.00021520085,0.20387514,0.00019145124,0.0005819384,0.022016777],"study_design_scores_gemma":[0.000047749352,0.0010261113,0.885114,0.000108697095,0.000108970264,0.06975805,0.0010411928,0.000724497,0.037515245,0.00009430897,0.0044197193,0.000041436844],"about_ca_topic_score_codex":0.013432912,"about_ca_topic_score_gemma":0.01510146,"teacher_disagreement_score":0.013432912,"about_ca_system_score_codex":0.00034434412,"about_ca_system_score_gemma":0.00045798143,"threshold_uncertainty_score":0.026709437},"labels":[],"label_agreement":null},{"id":"W2126556456","doi":"10.1128/jcm.42.7.3000-3011.2004","title":"Assessment of Partial Sequencing of the 65-Kilodalton Heat Shock Protein Gene ( <i>hsp65</i> ) for Routine Identification of <i>Mycobacterium</i> Species Isolated from Clinical Sources","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Biology; 16S ribosomal RNA; Identification (biology); Sequence analysis; DNA sequencing; Mycobacterium; Microbiology; Ribosomal RNA; Gene; Genetics; Bacteria; Ecology","score_opus":0.06491963062132924,"score_gpt":0.38943169800612837,"score_spread":0.3245120673847991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126556456","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99526983,0.00016932125,0.0036913708,0.000021463151,0.000004588254,0.000053913864,0.00043232995,0.000029688037,0.0003273569],"genre_scores_gemma":[0.97910243,0.00020553035,0.017974645,0.000058720896,0.000008979817,0.000061645645,0.0024060982,0.00002216707,0.0001598445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99843365,0.0005361251,0.00025766803,0.00028742064,0.00038273793,0.00010234947],"domain_scores_gemma":[0.99527884,0.0021611478,0.0008280052,0.00041340032,0.0010184598,0.00030013654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022652585,0.00027978545,0.00033570454,0.0010649171,0.0002470121,0.0004851667,0.0003730612,0.00041479783,0.0006789701],"category_scores_gemma":[0.0073492457,0.00023387835,0.00025560253,0.000628474,0.00018191991,0.00034847367,0.00034359941,0.00020720178,0.00036424352],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068532716,0.00031252523,0.118354335,0.0002905873,0.00007054242,0.00035229526,0.0005406243,0.0009814498,0.8493281,0.00008567382,0.0001285584,0.028870016],"study_design_scores_gemma":[0.000055264845,0.0035289144,0.39631322,0.00007393081,0.00034063516,0.004285869,0.0006761456,0.0124949245,0.57816356,0.0001570901,0.003873609,0.00003686713],"about_ca_topic_score_codex":0.0007735445,"about_ca_topic_score_gemma":0.001206696,"teacher_disagreement_score":0.0022652585,"about_ca_system_score_codex":0.00017451754,"about_ca_system_score_gemma":0.0003262065,"threshold_uncertainty_score":0.011979997},"labels":[],"label_agreement":null},{"id":"W2126783375","doi":"10.1128/jcm.02773-13","title":"Effect of the Initial Specimen Diversion Technique on Blood Culture Contamination Rates","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Capital District Health Authority; Dalhousie University","funders":"","keywords":"Contamination; Blood culture; Microbiology; Biology; Antibiotics; Ecology","score_opus":0.018992186843278244,"score_gpt":0.3580883075129385,"score_spread":0.3390961206696603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126783375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99622416,0.0018010656,0.0005551359,0.00016380937,0.0000730289,0.00009897579,0.00008797801,0.000032054442,0.00096380746],"genre_scores_gemma":[0.99620265,0.0010315736,0.0016148719,0.00014345958,0.000094787625,0.00006058412,0.00016519311,0.000021877904,0.00066506444],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99605346,0.0016434212,0.00051071,0.00041442597,0.0008960138,0.0004820052],"domain_scores_gemma":[0.978449,0.012372097,0.004397172,0.0011438053,0.0021228322,0.0015150949],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028478466,0.0004969306,0.00072814303,0.0006676994,0.00030585006,0.00084993703,0.00045533545,0.00036649837,0.0019077727],"category_scores_gemma":[0.018217415,0.00015396296,0.00080750405,0.0006620791,0.0004515236,0.0005358684,0.00057450274,0.00083326054,0.000300082],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06645005,0.01126199,0.36437896,0.0012687574,0.00097391877,0.0013749442,0.0015031876,0.0021179854,0.057021767,0.00018639861,0.001706878,0.49175513],"study_design_scores_gemma":[0.00035633656,0.06832899,0.8710003,0.00022514464,0.0007150089,0.0015446674,0.0010699776,0.0014841525,0.051472504,0.0000961696,0.003617693,0.00008907595],"about_ca_topic_score_codex":0.001767692,"about_ca_topic_score_gemma":0.0019812258,"teacher_disagreement_score":0.0028478466,"about_ca_system_score_codex":0.00051224424,"about_ca_system_score_gemma":0.000779862,"threshold_uncertainty_score":0.01506108},"labels":[],"label_agreement":null},{"id":"W2126798090","doi":"10.1128/jcm.42.10.4863-4865.2004","title":"Performance of the TechLab <i>C. DIFF</i> CHEK-60 Enzyme Immunoassay (EIA) in Combination with the <i>C. difficile</i> Tox A/B II EIA Kit, the Triage <i>C. difficile</i> Panel Immunoassay, and a Cytotoxin Assay for Diagnosis of <i>Clostridium difficile</i> -Associated Diarrhea","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; London Health Sciences Centre","funders":"","keywords":"Immunoassay; Triage; C difficile; Microbiology; Medicine; Clostridium difficile; Immunology; Biology; Emergency medicine; Antibiotics; Antibody","score_opus":0.03221999102625291,"score_gpt":0.30351782426279966,"score_spread":0.27129783323654677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126798090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99257666,0.0011373588,0.003598575,0.000060669023,0.00008337075,0.000099161996,0.0003160864,0.00008583867,0.002042243],"genre_scores_gemma":[0.99319845,0.00024419432,0.0051358347,0.00013231528,0.00004841122,0.000045044377,0.0005662947,0.000036920643,0.00059259735],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9923144,0.0027245553,0.00047949248,0.0019552184,0.0020212315,0.0005050995],"domain_scores_gemma":[0.9946233,0.0028304763,0.0005906662,0.0005156502,0.0010934074,0.000346406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0043718987,0.00094004546,0.0007806538,0.00081094424,0.00020175513,0.0007833305,0.00051680824,0.000926594,0.0009505538],"category_scores_gemma":[0.007526282,0.0006168252,0.00076269754,0.00068739144,0.00047321583,0.00053306366,0.00039232124,0.0006169715,0.00071445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.046820443,0.0067397486,0.4222727,0.00060941017,0.0012631438,0.00049344904,0.0006655736,0.0068367533,0.3993935,0.0001331728,0.0015313025,0.11324075],"study_design_scores_gemma":[0.0013476086,0.11658961,0.5884837,0.00008191764,0.0014095778,0.0029622042,0.00019773043,0.02831235,0.25678065,0.000137761,0.0035306409,0.00016621301],"about_ca_topic_score_codex":0.0027924401,"about_ca_topic_score_gemma":0.0021529163,"teacher_disagreement_score":0.0043718987,"about_ca_system_score_codex":0.00056764425,"about_ca_system_score_gemma":0.0004479322,"threshold_uncertainty_score":0.023121059},"labels":[],"label_agreement":null},{"id":"W2126872855","doi":"10.1128/jcm.44.3.881-887.2006","title":"Differentiating Host-Associated Variants of<i>Mycobacterium avium</i>by PCR for Detection of Large Sequence Polymorphisms","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Biology; Paratuberculosis; Mycobacterium; Genetics; Host (biology); Genomics; Genotype; Computational biology; Gene; Genome; Bacteria","score_opus":0.04004545927505719,"score_gpt":0.3630279319676022,"score_spread":0.322982472692545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126872855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8908478,0.0017007842,0.10136956,0.0003126813,0.00010580106,0.00055375084,0.0018870246,0.00047438094,0.0027481837],"genre_scores_gemma":[0.8434249,0.0010965344,0.1497201,0.00049213355,0.00007952948,0.00036843354,0.003347459,0.000119508746,0.0013514488],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999116,0.00023292474,0.00008382643,0.00029531907,0.00014643926,0.0001254095],"domain_scores_gemma":[0.99864656,0.0007938388,0.0002295217,0.0000904615,0.00013918831,0.00010049404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006962406,0.00049243035,0.00041753802,0.0009848295,0.0001693284,0.00047377413,0.0004452477,0.0007692567,0.0009004535],"category_scores_gemma":[0.002233393,0.00034198258,0.0004424795,0.00039219708,0.0004895059,0.00030139202,0.00027040747,0.00069722167,0.0009945376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012330974,0.00006717463,0.0054885643,0.00006969699,0.000013994742,0.00017036051,0.0000899927,0.00013597346,0.98738176,0.00011179113,0.00008649843,0.006260878],"study_design_scores_gemma":[0.000073666975,0.0014903573,0.09892997,0.000078410914,0.00022143776,0.004151315,0.00036790976,0.0098275915,0.8767683,0.00067279045,0.007361909,0.00005623959],"about_ca_topic_score_codex":0.0005891737,"about_ca_topic_score_gemma":0.0010193989,"teacher_disagreement_score":0.0009848295,"about_ca_system_score_codex":0.00015074683,"about_ca_system_score_gemma":0.00016360755,"threshold_uncertainty_score":0.0036821365},"labels":[],"label_agreement":null},{"id":"W2127081977","doi":"10.1128/jcm.43.7.3278-3282.2005","title":"Comparative Assessment of the Gelatin Particle Agglutination Test and an Enzyme-Linked Immunosorbent Assay for Diagnosis of Strongyloidiasis","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Associated Medical Services","funders":"National Research Council of Thailand; Kentucky Agricultural Experiment Station","keywords":"Strongyloidiasis; Latex fixation test; Agglutination (biology); Microbiology; Biology; Virology; Medicine; Immunology; Helminths; Antibody","score_opus":0.07071284697562184,"score_gpt":0.44339650380041673,"score_spread":0.3726836568247949,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127081977","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98841405,0.0025510243,0.007192901,0.000082240746,0.00004926143,0.000082320155,0.000111534035,0.00004749359,0.0014692211],"genre_scores_gemma":[0.9916393,0.000672695,0.0071978522,0.00003840672,0.00004353106,0.00004392414,0.00015341796,0.000005099555,0.00020577223],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9920489,0.0042592576,0.0005736152,0.0005990367,0.0022839652,0.00023519814],"domain_scores_gemma":[0.98702514,0.008585266,0.0014895028,0.0004229333,0.001943918,0.00053334504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009793272,0.00091394555,0.000661928,0.0018810146,0.00025183448,0.00083384593,0.0004997591,0.0009484356,0.0004926764],"category_scores_gemma":[0.013490887,0.0005507397,0.0004229824,0.0011767733,0.0006866843,0.0008690676,0.0005206098,0.0006073146,0.00030366456],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006086124,0.0008714741,0.6908872,0.00088892126,0.00058510876,0.0014369657,0.0015610185,0.0012985012,0.22906405,0.00018890765,0.00031103473,0.06682063],"study_design_scores_gemma":[0.00025445988,0.011695838,0.89255464,0.00012231157,0.0005555695,0.010478363,0.0007128179,0.01359232,0.06793445,0.00019246532,0.0017853829,0.00012137061],"about_ca_topic_score_codex":0.00062452623,"about_ca_topic_score_gemma":0.0009696869,"teacher_disagreement_score":0.009793272,"about_ca_system_score_codex":0.00023968368,"about_ca_system_score_gemma":0.00029256422,"threshold_uncertainty_score":0.051792383},"labels":[],"label_agreement":null},{"id":"W2127252960","doi":"10.1128/jcm.39.9.3085-3091.2001","title":"Identification of <i>Mycobacterium</i> Species by Multiple-Fluorescence PCR–Single-Strand Conformation Polymorphism Analysis of the 16S rRNA Gene","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba; Health Canada","funders":"","keywords":"Biology; 16S ribosomal RNA; Genetics; Ribosomal RNA; Polymerase chain reaction; Gene; Molecular biology; Mycobacterium; Bacteria","score_opus":0.04825858412247122,"score_gpt":0.3347203867163527,"score_spread":0.28646180259388143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127252960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97286487,0.0029214122,0.0217035,0.00015427543,0.00006116862,0.00010115324,0.00060916995,0.00014561511,0.001438892],"genre_scores_gemma":[0.9322279,0.0016528732,0.063944414,0.00014872284,0.000040133327,0.00008644989,0.0011278143,0.000029252275,0.0007424139],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99955815,0.00007251122,0.0000846121,0.00015062936,0.000092184106,0.000041915795],"domain_scores_gemma":[0.9995702,0.00010249843,0.00014022706,0.00004670147,0.00010243471,0.000037826532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005540665,0.00033233897,0.00041780216,0.0010822399,0.00019791945,0.00040409435,0.00025542153,0.00038524283,0.00064707285],"category_scores_gemma":[0.0012513293,0.0001641216,0.00035030968,0.00045767418,0.0002028022,0.0004203335,0.00021930611,0.00025179656,0.00052497827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032968255,0.00010977284,0.069096535,0.000324368,0.000032577154,0.00063946604,0.00024647382,0.00024128372,0.8740053,0.00016175034,0.00025266406,0.054560095],"study_design_scores_gemma":[0.000031950447,0.0017317425,0.21426873,0.00020957562,0.00017307485,0.015983693,0.00047798434,0.005264783,0.7474233,0.00061419554,0.01376818,0.000052850686],"about_ca_topic_score_codex":0.00038739876,"about_ca_topic_score_gemma":0.00037005747,"teacher_disagreement_score":0.0010822399,"about_ca_system_score_codex":0.00013851417,"about_ca_system_score_gemma":0.00019471749,"threshold_uncertainty_score":0.002930224},"labels":[],"label_agreement":null},{"id":"W2127283008","doi":"10.1128/jcm.40.2.615-6192002","title":"Genetic Diversity of <i>Streptococcus suis</i> Strains Isolated from Pigs and Humans as Revealed by Pulsed-Field Gel Electrophoresis","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Pulsed-field gel electrophoresis; Biology; Microbiology; Gel electrophoresis; Streptococcaceae; Streptococcus; Genetic diversity; Virology; Bacteria; Molecular biology; Genotype; Genetics; Gene; Medicine; Antibiotics; Virulence","score_opus":0.03140757213658105,"score_gpt":0.3214324321244168,"score_spread":0.2900248599878358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127283008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99917597,0.00019120165,0.00025299346,0.000019939824,0.000003209059,0.000004857346,0.000053927608,0.0000045449265,0.0002931922],"genre_scores_gemma":[0.9990871,0.00013894566,0.00042752287,0.000028979332,0.000009652019,0.0000057500497,0.00018087574,0.0000018399955,0.00011936449],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997609,0.00008612051,0.00001947745,0.000048060898,0.00004466382,0.000040756484],"domain_scores_gemma":[0.9997098,0.00012088495,0.000061906314,0.000020342279,0.000043554166,0.00004362633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004256374,0.00023116963,0.0002568952,0.0007294512,0.00018110267,0.00034523002,0.000075252654,0.00038985055,0.00043285423],"category_scores_gemma":[0.0008266376,0.00011938266,0.00013425938,0.0002644241,0.00036745885,0.00014032802,0.000117930096,0.00014099006,0.00015564851],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012901882,0.00013218305,0.73380226,0.00014995196,0.00014219062,0.0015931332,0.0014661675,0.00030963938,0.23516306,0.00017652691,0.0003100606,0.025464583],"study_design_scores_gemma":[0.000028729995,0.0020095713,0.97479546,0.00003806556,0.000077146484,0.0074038175,0.0005892849,0.0005197076,0.0131267905,0.00012723175,0.0012653483,0.000018853418],"about_ca_topic_score_codex":0.0006142588,"about_ca_topic_score_gemma":0.00036697925,"teacher_disagreement_score":0.0007294512,"about_ca_system_score_codex":0.00009783297,"about_ca_system_score_gemma":0.000093265204,"threshold_uncertainty_score":0.002251029},"labels":[],"label_agreement":null},{"id":"W2127319074","doi":"10.1128/jcm.41.12.5623-5632.2003","title":"Comparison of the Susceptibilities of <i>Candida</i> spp. to Fluconazole and Voriconazole in a 4-Year Global Evaluation Using Disk Diffusion","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Yonsei University College of Medicine; Pfizer Pharmaceuticals; Peking Union Medical College Hospital; Universiti Malaya; National Taiwan University Hospital; Centre Hospitalier Universitaire Vaudois; Peking Union Medical College; Hacettepe Üniversitesi; Universidad de Buenos Aires; Università degli Studi di Genova; University of Alberta; Wayne State University; National Taiwan University; Yonsei University; New York State Department of Health; Pfizer","keywords":"Fluconazole; Voriconazole; Microbiology; Candida albicans; Agar diffusion test; Corpus albicans; Candida parapsilosis; Biology; Veterinary medicine; Antifungal; Medicine; Bacteria","score_opus":0.08591204150488259,"score_gpt":0.4548341222271043,"score_spread":0.3689220807222217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127319074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985258,0.00072657206,0.00008933329,0.000026259055,0.0000063649536,0.000011342147,0.00019685242,0.0000068741274,0.00041069472],"genre_scores_gemma":[0.9978957,0.00049909006,0.00028831422,0.000043568394,0.000012067899,0.000009890911,0.0010001989,0.0000033263086,0.00024776568],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99938273,0.00015381194,0.00006973501,0.00014339625,0.00016678318,0.00008349293],"domain_scores_gemma":[0.99868363,0.00025374765,0.00040622568,0.00006038311,0.00041258032,0.00018341903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014932489,0.00061177893,0.00049088243,0.0009313431,0.00018488415,0.00048726733,0.0002824062,0.00039087576,0.0005262959],"category_scores_gemma":[0.0015108414,0.0002269226,0.0004263178,0.00070444256,0.0003669756,0.0005975469,0.0002947505,0.0003143918,0.00017065655],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032848683,0.00047498627,0.93203485,0.0002855349,0.0003619492,0.00072741916,0.00061572104,0.0005609926,0.024926266,0.000030574505,0.0005434714,0.036153376],"study_design_scores_gemma":[0.000051012255,0.003810482,0.98865813,0.00001418748,0.00012726814,0.0011893014,0.00027769408,0.0003477967,0.0041097417,0.000011808375,0.0013854236,0.000017216744],"about_ca_topic_score_codex":0.0021011622,"about_ca_topic_score_gemma":0.0031620539,"teacher_disagreement_score":0.0021011622,"about_ca_system_score_codex":0.0004816474,"about_ca_system_score_gemma":0.00021445013,"threshold_uncertainty_score":0.007897139},"labels":[],"label_agreement":null},{"id":"W2127338590","doi":"10.1128/jcm.00308-11","title":"Clostridium clostridioforme and Atopobium minutum Clinical Isolates with VanB-Type Resistance in France","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Biology; Vancomycin; Clostridium; Clostridium difficile; Virology; Bacteria; Antibiotics; Genetics; Staphylococcus aureus","score_opus":0.0528476251062742,"score_gpt":0.33303113184220884,"score_spread":0.2801835067359346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127338590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99781066,0.000864197,0.000121232006,0.0001741582,0.000022903832,0.000030336341,0.0001525965,0.000008137529,0.00081569614],"genre_scores_gemma":[0.9984668,0.0003273677,0.0002493717,0.0001418869,0.000026654723,0.000013551195,0.00024338672,0.0000034160955,0.00052752503],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99880743,0.00032234422,0.00007694578,0.00020925807,0.00024747368,0.0003366228],"domain_scores_gemma":[0.99915683,0.00013254258,0.00023575038,0.000029118963,0.00019498223,0.00025082432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006890295,0.00075927575,0.0005547072,0.0020458857,0.0013903157,0.0012101226,0.00042625944,0.001344389,0.0012848416],"category_scores_gemma":[0.0014783082,0.00045371157,0.00046466352,0.001076675,0.000574419,0.00024230996,0.00064774265,0.00048703334,0.00019488689],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016027098,0.00044048298,0.91666985,0.00021374946,0.00016311742,0.03051403,0.0029204665,0.00047668145,0.025935946,0.00032750575,0.0015447632,0.019190712],"study_design_scores_gemma":[0.0000733654,0.0008101646,0.9618591,0.000064059685,0.00006106955,0.028005471,0.0018271746,0.000356778,0.0028535721,0.00004788259,0.0040068645,0.00003456278],"about_ca_topic_score_codex":0.07054961,"about_ca_topic_score_gemma":0.050449222,"teacher_disagreement_score":0.07054961,"about_ca_system_score_codex":0.002069679,"about_ca_system_score_gemma":0.0013472294,"threshold_uncertainty_score":0.14027792},"labels":[],"label_agreement":null},{"id":"W2127472243","doi":"10.1128/jcm.01571-14","title":"Precision of Vancomycin and Daptomycin MICs for Methicillin-Resistant Staphylococcus aureus and Effect of Subculture and Storage","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services","funders":"","keywords":"Daptomycin; Etest; Vancomycin; Microbiology; Staphylococcus aureus; Broth microdilution; Medicine; Methicillin-resistant Staphylococcus aureus; Biology; Antimicrobial; Minimum inhibitory concentration; Bacteria","score_opus":0.024165674449782716,"score_gpt":0.3598817028091477,"score_spread":0.335716028359365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127472243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9657269,0.0039991955,0.026111638,0.00019084461,0.00024554343,0.00017706315,0.0013095904,0.0004353239,0.0018040112],"genre_scores_gemma":[0.96791583,0.00076169794,0.027285224,0.00020133865,0.0000847233,0.00032022395,0.0016802523,0.00015929948,0.0015915242],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9899233,0.002226259,0.0014792241,0.002959588,0.0032110433,0.00020060908],"domain_scores_gemma":[0.9802357,0.0065583163,0.003152778,0.0052161473,0.0045236475,0.00031345285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0075692707,0.00079770456,0.00092423713,0.0010536024,0.0006098043,0.001407839,0.0009908652,0.0009439551,0.0005974404],"category_scores_gemma":[0.01785025,0.0005060729,0.00078719924,0.0010495781,0.0007528268,0.00043191365,0.000797865,0.0006713556,0.0005664609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00603047,0.00036337945,0.17400096,0.00040781166,0.00038021384,0.00027087456,0.0023073389,0.0029415006,0.75768423,0.00017892876,0.0006685837,0.05476568],"study_design_scores_gemma":[0.000062744046,0.004096644,0.28859538,0.00014128065,0.00047926352,0.0011025852,0.0005595045,0.0075576953,0.6925359,0.00024513452,0.004452887,0.00017106651],"about_ca_topic_score_codex":0.002405226,"about_ca_topic_score_gemma":0.0025313615,"teacher_disagreement_score":0.0075692707,"about_ca_system_score_codex":0.0006159683,"about_ca_system_score_gemma":0.00048359335,"threshold_uncertainty_score":0.0400306},"labels":[],"label_agreement":null},{"id":"W2127815220","doi":"10.1128/jcm.41.9.4353-4358.2003","title":"<i>Corynebacterium nigricans</i> sp. nov.: Proposed Name for a Black-Pigmented <i>Corynebacterium</i> Species Recovered from the Human Female Urogenital Tract","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Corynebacterium; Microbiology; Biology; Agar; 16S ribosomal RNA; Bacteria; Agar plate; Strain (injury); Genetics; Anatomy","score_opus":0.03473389429261113,"score_gpt":0.30497711579671694,"score_spread":0.2702432215041058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127815220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9593059,0.011843823,0.013386259,0.0014823066,0.0014033776,0.0009177999,0.0024505036,0.00047646172,0.008733479],"genre_scores_gemma":[0.93549615,0.005805924,0.04260504,0.0012075966,0.0006802219,0.00034462218,0.009780269,0.000077477125,0.004002637],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994838,0.000048660146,0.00012145799,0.00016224117,0.0000886258,0.00009523888],"domain_scores_gemma":[0.9988538,0.00006453452,0.00042714167,0.00011849129,0.0003285827,0.00020741919],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040527174,0.0012640228,0.0006523737,0.0007646683,0.00065712957,0.001043644,0.0013882285,0.0011272803,0.00094732165],"category_scores_gemma":[0.0011898482,0.00022906509,0.00042911049,0.0010788861,0.00056224695,0.00086400786,0.0008934648,0.00066591427,0.0014150491],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001329823,0.0004925543,0.12945205,0.0026335295,0.00021605041,0.014573023,0.0015142265,0.002237583,0.69242084,0.0010988307,0.006829429,0.14720201],"study_design_scores_gemma":[0.00021565666,0.0037423708,0.5025253,0.0014061696,0.0005684257,0.079473786,0.004219251,0.008352018,0.19541882,0.0012373477,0.20260014,0.00024073731],"about_ca_topic_score_codex":0.005400826,"about_ca_topic_score_gemma":0.0032736484,"teacher_disagreement_score":0.005400826,"about_ca_system_score_codex":0.00049360923,"about_ca_system_score_gemma":0.00089034205,"threshold_uncertainty_score":0.01073879},"labels":[],"label_agreement":null},{"id":"W2127876781","doi":"10.1128/jcm.01168-10","title":"Evaluation of a New Chromogenic Medium (StrepB <i>Select</i> ) for Detection of Group B <i>Streptococcus</i> from Vaginal-Rectal Specimens","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Group B; Streptococcus; Streptococcus agalactiae; Chromogenic; Streptococcaceae; Incubation; Group A; Microbiology; Microbiological culture; Biology; Medicine; Internal medicine; Bacteria; Chromatography; Chemistry; Antibiotics","score_opus":0.053040323057351776,"score_gpt":0.3847189934410963,"score_spread":0.3316786703837445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127876781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98218256,0.0024507095,0.013644747,0.00015884753,0.000076265394,0.00020042215,0.00025227427,0.00007961909,0.00095465715],"genre_scores_gemma":[0.935233,0.0027845043,0.059364993,0.000120478115,0.00007378008,0.00022456024,0.0009843674,0.000042963984,0.0011713377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976891,0.00082695275,0.00017970342,0.00025596944,0.00092415,0.00012415231],"domain_scores_gemma":[0.99732363,0.0014815911,0.00040394528,0.0001757077,0.0003915702,0.00022343341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018750312,0.00084392604,0.0004821056,0.0010893616,0.00033620195,0.0007644395,0.00075118005,0.0007736086,0.00069842674],"category_scores_gemma":[0.003042576,0.00041001887,0.00039004852,0.00063476706,0.0006412642,0.0006356018,0.00073216454,0.00057852693,0.00030941318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013949148,0.00035357,0.006934432,0.00022367899,0.000033564345,0.00013152444,0.00011884782,0.00016343992,0.9831207,0.00005204828,0.00006320513,0.0074101947],"study_design_scores_gemma":[0.00006148309,0.007087684,0.023508154,0.000025840962,0.00014969365,0.0017221405,0.0001440694,0.0018726614,0.9642027,0.000031187636,0.0011567115,0.000037683458],"about_ca_topic_score_codex":0.0017883179,"about_ca_topic_score_gemma":0.0026888342,"teacher_disagreement_score":0.0018750312,"about_ca_system_score_codex":0.00032950874,"about_ca_system_score_gemma":0.00052257336,"threshold_uncertainty_score":0.009916186},"labels":[],"label_agreement":null},{"id":"W2127885339","doi":"10.1128/jcm.38.9.3474-3477.2000","title":"Quantitative, Competitive PCR Analysis of Porcine Circovirus DNA in Serum from Pigs with Postweaning Multisystemic Wasting Syndrome","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Porcine circovirus; Wasting Syndrome; Biology; Circovirus; Virology; Wasting; Plasmid; DNA; Genome; Real-time polymerase chain reaction; Polymerase chain reaction; Immunology; Molecular biology; Genetics; Virus; Gene; Endocrinology","score_opus":0.05562822489051184,"score_gpt":0.32003969815264166,"score_spread":0.2644114732621298,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127885339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96096605,0.0015616934,0.034227107,0.00009815859,0.000107258915,0.00041673344,0.0007137673,0.00025154828,0.0016577065],"genre_scores_gemma":[0.95552254,0.0008339569,0.038865358,0.0002611596,0.00008894005,0.0006197692,0.0022731677,0.000027819964,0.0015072931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985336,0.00040446792,0.00011524373,0.00032771888,0.0004178625,0.00020118289],"domain_scores_gemma":[0.9984847,0.0007504362,0.00015357175,0.00014285793,0.00035641622,0.00011215796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010641599,0.00073719805,0.0004984715,0.0006704288,0.00023453866,0.00039898691,0.0003451757,0.0007690753,0.0006260796],"category_scores_gemma":[0.0019232918,0.00028334474,0.0002543753,0.0004533307,0.00043809906,0.00019165155,0.00015788485,0.00060091144,0.00030501897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032255353,0.00011867869,0.004673073,0.000091971066,0.000017806362,0.00006587246,0.00009664184,0.00008154194,0.99086237,0.000056044024,0.00005532135,0.003558029],"study_design_scores_gemma":[0.0001417609,0.0049585057,0.049932636,0.000039432573,0.00013433753,0.001772301,0.00019430727,0.0070687183,0.9332014,0.00015496936,0.0023698644,0.000031810887],"about_ca_topic_score_codex":0.0008254219,"about_ca_topic_score_gemma":0.0011315439,"teacher_disagreement_score":0.0010641599,"about_ca_system_score_codex":0.00029451595,"about_ca_system_score_gemma":0.00028417393,"threshold_uncertainty_score":0.00562793},"labels":[],"label_agreement":null},{"id":"W2128071318","doi":"10.1128/jcm.00557-08","title":"Evaluation of StrepB Carrot Broth versus Lim Broth for Detection of Group B Streptococcus Colonization Status of Near-Term Pregnant Women","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Group B; Colonization; Predictive value; Streptococcus; Gestation; Medicine; Obstetrics; Biology; Internal medicine; Gynecology; Pregnancy; Microbiology; Bacteria","score_opus":0.1064753437869894,"score_gpt":0.4058741819513271,"score_spread":0.29939883816433766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128071318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986626,0.00065047847,0.0002834428,0.0000467145,0.000009199867,0.000014294438,0.0000345702,0.000007706675,0.00029111456],"genre_scores_gemma":[0.9984908,0.0002552618,0.0010405993,0.000039081435,0.00001141443,0.000010483964,0.00006574154,0.0000021187025,0.00008435071],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974254,0.0014523999,0.00016064246,0.00030892502,0.00053995603,0.000112690606],"domain_scores_gemma":[0.9955745,0.002731174,0.00066481146,0.00013844106,0.00045002467,0.00044103494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031213018,0.00035948618,0.00051193865,0.00071480795,0.00014899482,0.00048223382,0.00036127304,0.00046072312,0.00047267458],"category_scores_gemma":[0.014169054,0.00025743438,0.00017809987,0.0003849418,0.0004065084,0.00046571423,0.0003129376,0.00027618266,0.00024490344],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011614973,0.0004307636,0.8960082,0.00025124708,0.000163347,0.00074014626,0.0008147186,0.00040749606,0.041647192,0.00006753369,0.00018319189,0.04767122],"study_design_scores_gemma":[0.0002299994,0.022852156,0.9343586,0.00011775833,0.00030876923,0.006259361,0.000941954,0.0074594067,0.026155358,0.00009694826,0.0011562168,0.00006350592],"about_ca_topic_score_codex":0.0010955272,"about_ca_topic_score_gemma":0.002095922,"teacher_disagreement_score":0.0031213018,"about_ca_system_score_codex":0.00025095028,"about_ca_system_score_gemma":0.00030971394,"threshold_uncertainty_score":0.016507208},"labels":[],"label_agreement":null},{"id":"W2128202937","doi":"10.1128/jcm.41.9.4343-4352.2003","title":"Use of Discriminatory Probes for Strain Typing of Formalin-Fixed, Rabies Virus-Infected Tissues by In Situ Hybridization","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Rabies virus; Rabies; Virology; Typing; Biology; Rhabdoviridae; Lyssavirus; Amplicon; Virus; Digoxigenin; In situ hybridization; Polymerase chain reaction; Microbiology; Gene; Genetics; Messenger RNA","score_opus":0.061124068408050854,"score_gpt":0.34970121911685653,"score_spread":0.2885771507088057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128202937","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24071077,0.0019921446,0.74698246,0.00038461937,0.00027941627,0.0005214536,0.0007314688,0.0014529233,0.006944799],"genre_scores_gemma":[0.34866288,0.0033793603,0.6377505,0.00031507577,0.0000884168,0.0014174075,0.002521112,0.00044500906,0.0054202783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898535,0.00019230123,0.00012480898,0.00036569108,0.00016333364,0.00016839725],"domain_scores_gemma":[0.99835545,0.0007696592,0.0001878103,0.00029228616,0.000272122,0.00012266706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017176616,0.001136537,0.00048067232,0.0014208603,0.0006895662,0.000857519,0.0010948719,0.00086685986,0.002072398],"category_scores_gemma":[0.0015140927,0.0007608772,0.00038593775,0.00055066333,0.00089872256,0.0007983324,0.0006553649,0.001209433,0.001264366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000014890607,0.000005771764,0.0000954401,0.000036108737,0.0000019022914,0.000029801915,0.000029345894,0.000025832247,0.99786574,0.00018815874,0.000016733198,0.0016903115],"study_design_scores_gemma":[0.000021112608,0.00026613544,0.0035647568,0.000039140028,0.000051092495,0.0009901762,0.00017537581,0.0016453003,0.9839213,0.0006207827,0.008688172,0.000016604934],"about_ca_topic_score_codex":0.0006202074,"about_ca_topic_score_gemma":0.001550283,"teacher_disagreement_score":0.002072398,"about_ca_system_score_codex":0.0005025829,"about_ca_system_score_gemma":0.00057845307,"threshold_uncertainty_score":0.009083927},"labels":[],"label_agreement":null},{"id":"W2128366978","doi":"10.1128/jcm.42.8.3570-3574.2004","title":"Characterization and Prevalence of MefA, MefE, and the Associated <i>msr</i> (D) Gene in <i>Streptococcus pneumoniae</i> Clinical Isolates","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Streptococcus pneumoniae; Open reading frame; Efflux; Microbiology; Gene; Strain (injury); Biology; Genetics; Antibiotics; Peptide sequence","score_opus":0.027908853395842696,"score_gpt":0.3473816824142593,"score_spread":0.3194728290184166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128366978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99885786,0.00029716475,0.00014220533,0.000030856234,0.000002207467,0.0000105299405,0.00025982058,0.0000046293644,0.00039468776],"genre_scores_gemma":[0.9986308,0.00024388495,0.00036994184,0.000036612808,0.000006792799,0.0000082271135,0.0005177207,0.000004388974,0.00018169296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950767,0.00006893383,0.00008785245,0.00012196012,0.00013094959,0.000082660496],"domain_scores_gemma":[0.9991867,0.00015054626,0.00029552705,0.000039655573,0.00022293748,0.00010454831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024649687,0.00021412261,0.00033615262,0.001149876,0.00027784865,0.000649432,0.00021289263,0.0004986017,0.00071973394],"category_scores_gemma":[0.00140268,0.00019962784,0.00023309297,0.00072488346,0.00031867024,0.00023445883,0.00018348516,0.00026889527,0.00035181004],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026682508,0.00007068678,0.8711789,0.00009995146,0.000045334036,0.0012295019,0.00048301712,0.00009319859,0.119312495,0.00004766296,0.00016678122,0.007005618],"study_design_scores_gemma":[0.0000074483182,0.00017346858,0.98065877,0.00002313757,0.000036496585,0.0058398526,0.0004647257,0.00013221789,0.011781143,0.000016590899,0.00085757015,0.000008600764],"about_ca_topic_score_codex":0.0055218,"about_ca_topic_score_gemma":0.005364334,"teacher_disagreement_score":0.0055218,"about_ca_system_score_codex":0.00029860856,"about_ca_system_score_gemma":0.00023817967,"threshold_uncertainty_score":0.010979354},"labels":[],"label_agreement":null},{"id":"W2128434231","doi":"10.1128/jcm.00595-10","title":"<i>Bordetella holmesii</i> Bacteremia in Asplenic Children: Report of Four Cases Initially Misidentified as <i>Acinetobacter lwoffii</i>","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Bacteremia; Fastidious organism; Medicine; Acinetobacter; Microbiology; Asplenia; Virology; Biology; Antibiotics; Immunology; Spleen; Bacteria; Genetics","score_opus":0.03317950427940894,"score_gpt":0.33917178499034817,"score_spread":0.3059922807109392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128434231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967452,0.0007969999,0.0006781121,0.0002004682,0.0000860583,0.00006683245,0.000049789956,0.00003788648,0.001338666],"genre_scores_gemma":[0.9982936,0.00046166472,0.00060545857,0.00015944439,0.00010350044,0.00002077837,0.00007517655,0.000013642703,0.000266773],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99797446,0.00023402183,0.00041825822,0.0003787137,0.00033372766,0.00066077383],"domain_scores_gemma":[0.99605596,0.00074539933,0.0017233598,0.0003052876,0.00044266673,0.00072727195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006803475,0.0023220277,0.00082496385,0.0017731661,0.0025708633,0.0016566869,0.0012154065,0.0029511326,0.000950054],"category_scores_gemma":[0.00546727,0.0017175071,0.0010489863,0.0010451917,0.0024806655,0.0011618425,0.0014715329,0.0021487654,0.00065301347],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026366743,0.00025944188,0.47065124,0.00011030903,0.00005086267,0.5183703,0.0020700083,0.00017179827,0.0034279728,0.00009307546,0.00061587547,0.003915502],"study_design_scores_gemma":[0.000035277408,0.0007831783,0.15639539,0.000068148496,0.00010963835,0.833072,0.0025683271,0.00026194815,0.004754395,0.000053732812,0.0018318617,0.000066021996],"about_ca_topic_score_codex":0.009580646,"about_ca_topic_score_gemma":0.0053459457,"teacher_disagreement_score":0.009580646,"about_ca_system_score_codex":0.001959054,"about_ca_system_score_gemma":0.0009342494,"threshold_uncertainty_score":0.019049764},"labels":[],"label_agreement":null},{"id":"W2128447129","doi":"10.1128/jcm.01163-09","title":"Assessment of Flocked Swabs for Use in Identification of Streptococcal Pharyngitis","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Pharyngitis; Medicine; Acute Pharyngitis; Identification (biology); Microbiology; Internal medicine; Biology","score_opus":0.08351034433599841,"score_gpt":0.46337806889740035,"score_spread":0.37986772456140194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128447129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99318767,0.0029689725,0.002610127,0.000072228715,0.000086366184,0.00013143725,0.00013133563,0.000033231147,0.0007786486],"genre_scores_gemma":[0.98967254,0.00089751725,0.008959488,0.00007270628,0.000027526825,0.000041486055,0.00011672149,0.000009379134,0.00020270652],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99517524,0.0020669757,0.0005081083,0.00048379696,0.0015550731,0.00021074167],"domain_scores_gemma":[0.98947376,0.004762947,0.0019723603,0.00046435726,0.0026911756,0.0006355261],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044543557,0.0007169713,0.00094593223,0.0012621592,0.00027220987,0.0005708761,0.0005315616,0.0007827571,0.0005693522],"category_scores_gemma":[0.017422603,0.00027228022,0.00032777016,0.00063299085,0.00047598884,0.0011928952,0.0004293953,0.0006077657,0.00018374638],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00639654,0.0009881023,0.75228995,0.0011931753,0.00042844706,0.0017674303,0.0014055676,0.0007575779,0.13248543,0.00008618154,0.00039072018,0.1018108],"study_design_scores_gemma":[0.000099643985,0.017785056,0.9144685,0.00028014372,0.00035761797,0.004505137,0.0009155875,0.0027297637,0.05739863,0.00006677351,0.0013237103,0.00006936405],"about_ca_topic_score_codex":0.002090933,"about_ca_topic_score_gemma":0.0028300593,"teacher_disagreement_score":0.0044543557,"about_ca_system_score_codex":0.0003510234,"about_ca_system_score_gemma":0.00044017387,"threshold_uncertainty_score":0.023557186},"labels":[],"label_agreement":null},{"id":"W2128757992","doi":"10.1128/jcm.38.7.2706-2714.2000","title":"Characterization of a Toxin A-Negative, Toxin B-Positive Strain of <i>Clostridium difficile</i> Responsible for a Nosocomial Outbreak of <i>Clostridium difficile</i> -Associated Diarrhea","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Manitoba; St. Boniface Hospital","funders":"","keywords":"Clostridium difficile toxin B; Clostridium difficile toxin A; Clostridium difficile; Microbiology; Toxin; Outbreak; Biology; Clostridiaceae; Virology; Strain (injury); Diarrhea; Ribotyping; Medicine; Gene; Polymerase chain reaction; Genetics; Pathology; Antibiotics","score_opus":0.03395642752668945,"score_gpt":0.3439455402925083,"score_spread":0.30998911276581886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128757992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992416,0.000059607937,0.00027838274,0.00003396484,0.000009629982,0.000016450927,0.00013183636,0.0000040592736,0.00022442616],"genre_scores_gemma":[0.9967218,0.00013286294,0.0015874876,0.000089731504,0.000020982512,0.000012583908,0.001152913,0.000010167024,0.0002713554],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997677,0.00002647635,0.000033774108,0.000046182664,0.000082469145,0.000043436015],"domain_scores_gemma":[0.99948716,0.00010651179,0.00015243496,0.000039832747,0.00012502277,0.00008907441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013182395,0.00035916403,0.00021586152,0.0004728853,0.0003966003,0.00045484997,0.0002454488,0.00044917603,0.0004711959],"category_scores_gemma":[0.0008096687,0.00016568833,0.00027595498,0.00034668515,0.0001730405,0.00019418982,0.00021674049,0.00044173122,0.0002461718],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031597322,0.00031884952,0.070949726,0.00007662999,0.000020916097,0.003243869,0.0004381523,0.000105620384,0.92006975,0.00006959144,0.00014355153,0.0042473413],"study_design_scores_gemma":[0.00015913375,0.004144899,0.6717437,0.00010202651,0.00019395769,0.045583326,0.0021081637,0.0018649289,0.26750347,0.00011436031,0.006409486,0.000072648036],"about_ca_topic_score_codex":0.0012370987,"about_ca_topic_score_gemma":0.0010958934,"teacher_disagreement_score":0.0012370987,"about_ca_system_score_codex":0.000110467925,"about_ca_system_score_gemma":0.00018489083,"threshold_uncertainty_score":0.0024597645},"labels":[],"label_agreement":null},{"id":"W2129006267","doi":"10.1128/jcm.03146-12","title":"Detection of Avian Retroviruses in Vaccines by Amplification on DF-1 Cells with Immunostaining and Fluorescent Product-Enhanced Reverse Transcriptase Endpoint Methods","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Virology; Retrovirus; Reverse transcriptase; Biology; Immunostaining; Multiplex; Virus; Infectivity; Molecular biology; Cell culture; Polymerase chain reaction; Immunology; Immunohistochemistry; Bioinformatics; Genetics; Gene","score_opus":0.028170818269475126,"score_gpt":0.36481289994255894,"score_spread":0.3366420816730838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129006267","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29813775,0.0031584743,0.6911512,0.00014391438,0.00015351824,0.0018091544,0.0006649851,0.0011133899,0.0036676016],"genre_scores_gemma":[0.3089451,0.0052871983,0.67423743,0.00018839054,0.000072494906,0.0033238388,0.0027984695,0.0004164283,0.0047306465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9942205,0.0020219511,0.00060857594,0.0010481114,0.001734109,0.00036681286],"domain_scores_gemma":[0.9959927,0.0018460812,0.0006461123,0.0005674467,0.0008471513,0.00010051914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004736706,0.0026703302,0.0008774474,0.0012991917,0.00044055883,0.0008679422,0.0012560275,0.0014780366,0.0009343169],"category_scores_gemma":[0.0033468907,0.000907727,0.0011255619,0.0006478133,0.0011515734,0.00081520673,0.00080839597,0.002066006,0.0011105308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000047975416,0.000035742894,0.0002240934,0.00009589242,0.000009898927,0.000019979665,0.00007175472,0.0000725108,0.99726343,0.00011625479,0.000024919575,0.0020175448],"study_design_scores_gemma":[0.0000070079395,0.00030213298,0.00077320664,0.000012283386,0.000025749503,0.00012592385,0.000017387114,0.00095210946,0.99677473,0.00004023337,0.00095615507,0.000013056918],"about_ca_topic_score_codex":0.00076577265,"about_ca_topic_score_gemma":0.0014254337,"teacher_disagreement_score":0.004736706,"about_ca_system_score_codex":0.0006052678,"about_ca_system_score_gemma":0.00051822985,"threshold_uncertainty_score":0.025050402},"labels":[],"label_agreement":null},{"id":"W2129044335","doi":"10.1128/jcm.41.2.730-734.2003","title":"Rapid Detection of <i>Clostridium difficile</i> in Feces by Real-Time PCR","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research Council Canada","keywords":"Clostridium difficile; Microbiology; Pseudomembranous colitis; Biology; Amplicon; Feces; Clostridium difficile toxin B; Polymerase chain reaction; Clostridiaceae; Clostridium difficile toxin A; Multiplex polymerase chain reaction; Virology; Multiplex; Toxin; Enterotoxin; Colitis; Antibiotics; Gene; Escherichia coli; Genetics","score_opus":0.0357578019616045,"score_gpt":0.3469211030836901,"score_spread":0.3111633011220856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129044335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.55772233,0.008252778,0.41835645,0.00045417258,0.00041921638,0.0011158345,0.0046035303,0.004130525,0.0049452228],"genre_scores_gemma":[0.50403357,0.004077582,0.4780596,0.0007114295,0.00016496071,0.0014334421,0.00668141,0.00032438812,0.004513596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971071,0.00063454517,0.00024301007,0.0010526733,0.0005947655,0.00036790944],"domain_scores_gemma":[0.9985536,0.00054715143,0.00037749036,0.00010383808,0.00035003267,0.00006787188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015222498,0.001222868,0.0010043312,0.001179046,0.00022616402,0.0010414945,0.0008416264,0.00088379584,0.0010242274],"category_scores_gemma":[0.0021334044,0.00063001073,0.0007668944,0.0008822095,0.0006949499,0.0006479112,0.0005571494,0.0009509116,0.0012457572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015760439,0.000061302446,0.0014148694,0.00020782441,0.00001521083,0.00005688462,0.00007926668,0.00031113432,0.9875329,0.000096605225,0.00023182566,0.009834632],"study_design_scores_gemma":[0.000047268124,0.0008936678,0.0073035304,0.0001031428,0.00008589792,0.00049641536,0.00012293963,0.007999492,0.97629535,0.00018067389,0.0063989707,0.00007268763],"about_ca_topic_score_codex":0.0003990936,"about_ca_topic_score_gemma":0.0005957255,"teacher_disagreement_score":0.0015222498,"about_ca_system_score_codex":0.0003910461,"about_ca_system_score_gemma":0.00041287267,"threshold_uncertainty_score":0.008050501},"labels":[],"label_agreement":null},{"id":"W2129158501","doi":"10.1128/jcm.01584-10","title":"A Twist on Lyme: the Challenge of Diagnosing European Lyme Neuroborreliosis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Children's Hospital of Eastern Ontario; University of Toronto; University Health Network; SickKids Foundation; University of Ottawa; Hospital for Sick Children","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Lyme Neuroborreliosis; Neuroborreliosis; Lyme disease; Borrelia; LYME; Tick-borne disease; Borrelia burgdorferi; Tick; Biology; Medicine; Immunology; Virology; Antibody","score_opus":0.03339067997817609,"score_gpt":0.3251728812097378,"score_spread":0.29178220123156173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129158501","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010613815,0.05566771,0.0028804424,0.90896547,0.028995264,0.000024431592,0.00007043311,0.00013959916,0.0021953718],"genre_scores_gemma":[0.046586964,0.14671214,0.02111502,0.59892744,0.18049352,0.00014663026,0.00019975253,0.0002940974,0.005524427],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9758276,0.010774064,0.0034399985,0.0018246414,0.006603588,0.0015301456],"domain_scores_gemma":[0.90638727,0.050747458,0.0024339561,0.003098069,0.02678452,0.010548715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06628473,0.0018201345,0.004163258,0.0048653553,0.0045991433,0.0100508835,0.0045048376,0.021572165,0.007020077],"category_scores_gemma":[0.101609975,0.0016281543,0.0018610283,0.0012797846,0.019415813,0.02954414,0.0067587853,0.04377849,0.00468531],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043421658,0.00010532481,0.0033032747,0.0015782671,0.00016867495,0.0033050017,0.0018186145,0.0005654577,0.0014000017,0.021273855,0.720616,0.24543133],"study_design_scores_gemma":[0.00031340888,0.0005447329,0.006181784,0.012421804,0.00019318322,0.02118027,0.012464234,0.0024190028,0.0006104624,0.17678507,0.76618934,0.000696806],"about_ca_topic_score_codex":0.0093672685,"about_ca_topic_score_gemma":0.01911449,"teacher_disagreement_score":0.06628473,"about_ca_system_score_codex":0.0050838315,"about_ca_system_score_gemma":0.006722607,"threshold_uncertainty_score":0.35055137},"labels":[],"label_agreement":null},{"id":"W2129385085","doi":"10.1128/jcm.43.10.5158-5163.2005","title":"Rapid Genotyping of Hepatitis C Virus by Primer-Specific Extension Analysis","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Health","funders":"","keywords":"Genotype; Genotyping; Hepatitis C virus; Virology; Hepacivirus; Hepatitis C; Biology; Population; Immunology; Virus; Medicine; Genetics","score_opus":0.08165345413892645,"score_gpt":0.41047881032411665,"score_spread":0.3288253561851902,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129385085","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16990328,0.003602892,0.8135214,0.00020000152,0.00017183837,0.0022626072,0.0029669113,0.0027972476,0.004573854],"genre_scores_gemma":[0.14828272,0.0012134047,0.8422732,0.0003135898,0.000030698186,0.0019667516,0.0034038874,0.00012724943,0.0023884883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940544,0.0025087886,0.00048510364,0.0015602446,0.0010780096,0.0003134902],"domain_scores_gemma":[0.9962715,0.0021134415,0.00042870248,0.00037827087,0.00070091925,0.0001071043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039108577,0.0015623159,0.0011399455,0.0018714025,0.00030212046,0.0007162914,0.00088743074,0.0008783981,0.0018551676],"category_scores_gemma":[0.006172363,0.0009657739,0.0009865218,0.0011593208,0.0004950301,0.0005517669,0.0010295612,0.001434247,0.002444884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011822671,0.00026479052,0.009678737,0.0008676973,0.00020568207,0.00029188732,0.00048040604,0.006225109,0.85562176,0.0024512568,0.0017273847,0.121002965],"study_design_scores_gemma":[0.0003685642,0.003045372,0.02505506,0.00032230237,0.0003317649,0.0022597425,0.00017296379,0.10440049,0.8192282,0.0032457744,0.04128991,0.0002799464],"about_ca_topic_score_codex":0.00038474423,"about_ca_topic_score_gemma":0.0010023304,"teacher_disagreement_score":0.0039108577,"about_ca_system_score_codex":0.00037143854,"about_ca_system_score_gemma":0.0006767177,"threshold_uncertainty_score":0.020682812},"labels":[],"label_agreement":null},{"id":"W2129411233","doi":"10.1128/jcm.42.4.1409-1413.2004","title":"Detection and Genotyping of Varicella-Zoster Virus by TaqMan Allelic Discrimination Real-Time PCR","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"","keywords":"TaqMan; Genotyping; Virology; Varicella zoster virus; Biology; Virus; Genotype; Restriction fragment length polymorphism; Real-time polymerase chain reaction; Chickenpox Vaccine; Polymerase chain reaction; Varicella vaccine; Genetics; Antibody; Immunization; Gene","score_opus":0.029877294454300585,"score_gpt":0.347062110987802,"score_spread":0.3171848165335014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129411233","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3700473,0.0019184992,0.6127783,0.00029714408,0.0002987002,0.0016156499,0.0029981511,0.0022333893,0.007812829],"genre_scores_gemma":[0.33953744,0.0014575745,0.6343144,0.00047436845,0.00011577182,0.003926327,0.0054505514,0.00016045237,0.014563054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99593014,0.0010453522,0.00027582605,0.00091589644,0.0013806608,0.0004521809],"domain_scores_gemma":[0.9984738,0.0005356101,0.00022814,0.00022519799,0.00042666044,0.000110459],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024356593,0.00061565166,0.00085572246,0.0011293085,0.00026317683,0.00083381764,0.0009936355,0.0007505475,0.0023240468],"category_scores_gemma":[0.003945197,0.00073323946,0.00043924522,0.0009725221,0.0006265998,0.0004374103,0.0004182467,0.0008584874,0.0014929319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003746881,0.0001959003,0.0077114627,0.00017987352,0.000043096996,0.00009151764,0.00027981255,0.00090239954,0.95664144,0.0013084698,0.00085659797,0.031414762],"study_design_scores_gemma":[0.00022841411,0.002526016,0.03360703,0.00006828762,0.00020342985,0.00091966905,0.00021048996,0.024746638,0.8961699,0.0015314355,0.039669074,0.00011965344],"about_ca_topic_score_codex":0.0013888658,"about_ca_topic_score_gemma":0.002901593,"teacher_disagreement_score":0.0024356593,"about_ca_system_score_codex":0.0006141599,"about_ca_system_score_gemma":0.0005861477,"threshold_uncertainty_score":0.0128811},"labels":[],"label_agreement":null},{"id":"W2129487858","doi":"10.1128/jcm.01693-10","title":"Shiga-Toxigenic Escherichia coli Detection in Stool Samples Screened for Viral Gastroenteritis in Alberta, Canada","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Provincial Laboratory of Public Health","funders":"","keywords":"Serotype; Diarrhea; Shiga toxin; Virology; Microbiology; Outbreak; Biology; Feces; Escherichia coli; Medicine","score_opus":0.019480281719742035,"score_gpt":0.32534281415118405,"score_spread":0.305862532431442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129487858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99359566,0.0013212214,0.00025618184,0.00016860927,0.000031503292,0.00010001313,0.0011417149,0.000023617838,0.0033615404],"genre_scores_gemma":[0.9952987,0.0009732091,0.00078555674,0.00019751446,0.000009014667,0.000018504925,0.0011065181,0.0000073597676,0.0016036074],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990557,0.000052575928,0.000046994875,0.00011675619,0.00052047387,0.00020753649],"domain_scores_gemma":[0.99836105,0.00008161106,0.00013690269,0.000020967133,0.0010410792,0.00035841917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005269746,0.0004316231,0.00036402448,0.0019481083,0.0023680034,0.001215374,0.0009923498,0.0003913937,0.0008711802],"category_scores_gemma":[0.0013338819,0.0004175762,0.00025418718,0.00260362,0.0007911104,0.00016178118,0.00061431323,0.00038164813,0.00016617136],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002824959,0.000072319315,0.9777529,0.000119257245,0.00003679042,0.0017794147,0.0011538891,0.0002725796,0.0077538635,0.0000759754,0.001057863,0.009642663],"study_design_scores_gemma":[0.0000127503035,0.00007721987,0.9953904,0.00003828257,0.000018665445,0.00054237037,0.001683635,0.0003793385,0.000664423,0.000013748369,0.0011690746,0.0000100483685],"about_ca_topic_score_codex":0.9845962,"about_ca_topic_score_gemma":0.9936609,"teacher_disagreement_score":0.019250656,"about_ca_system_score_codex":0.019250656,"about_ca_system_score_gemma":0.022448763,"threshold_uncertainty_score":0.13967395},"labels":[],"label_agreement":null},{"id":"W2129853049","doi":"10.1128/jcm.41.8.3933-3935.2003","title":"Modification of the Double-Disk Test for Detection of <i>Enterobacteriaceae</i> Producing Extended-Spectrum and AmpC β-Lactamases","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Medical Research Council","keywords":"Citrobacter freundii; Enterobacteriaceae; Enterobacter aerogenes; Serratia marcescens; Enterobacter cloacae; Microbiology; Enterobacter; Citrobacter; Serratia; Biology; Enterobacteriaceae Infections; Bacilli; Bacteria; Escherichia coli; Genetics","score_opus":0.027620101550929345,"score_gpt":0.31971725847678917,"score_spread":0.2920971569258598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129853049","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6559542,0.0037507215,0.31711566,0.0014164656,0.0016207953,0.0023190733,0.0031818273,0.003975576,0.010665677],"genre_scores_gemma":[0.48978224,0.0026536437,0.4869765,0.0011841194,0.0002285668,0.0020163045,0.0048725563,0.0003116609,0.011974406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816066,0.00049988716,0.00020081682,0.00037404703,0.0006562326,0.00010832708],"domain_scores_gemma":[0.9982408,0.00054891297,0.00031303216,0.00029598057,0.00038360961,0.00021753732],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007509205,0.0007879602,0.00089624565,0.0012530766,0.00021163217,0.0005088259,0.0009405517,0.0010188115,0.0021607114],"category_scores_gemma":[0.003257617,0.00043477738,0.00055713695,0.0006087782,0.00033629156,0.00041021782,0.0006678524,0.0010041638,0.0017824338],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005100271,0.00025494583,0.0065298504,0.00021109986,0.0000387177,0.0002593182,0.0000516221,0.00009454603,0.9544328,0.0001688121,0.0010848624,0.036363404],"study_design_scores_gemma":[0.00016127792,0.0032826024,0.058452275,0.00006617129,0.00016999857,0.010427912,0.000095003095,0.0053766025,0.9062261,0.00033726488,0.015289968,0.00011474138],"about_ca_topic_score_codex":0.0005772373,"about_ca_topic_score_gemma":0.0012252424,"teacher_disagreement_score":0.0021607114,"about_ca_system_score_codex":0.00013798686,"about_ca_system_score_gemma":0.00028509006,"threshold_uncertainty_score":0.0072282553},"labels":[],"label_agreement":null},{"id":"W2129855053","doi":"10.1128/jcm.38.12.4356-4360.2000","title":"Quantitative Analysis of Cytomegalovirus (CMV) Viremia Using the pp65 Antigenemia Assay and the COBAS AMPLICOR CMV MONITOR PCR Test after Blood and Marrow Allogeneic Transplantation","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôpital du Saint-Sacrement; Université de Montréal; Hôpital Maisonneuve-Rosemont; Centre hospitalier universitaire de Québec","funders":"","keywords":"Viremia; Ganciclovir; Betaherpesvirinae; Cytomegalovirus; Medicine; Human cytomegalovirus; Virology; Roche Diagnostics; Immunology; Real-time polymerase chain reaction; Transplantation; Herpesviridae; Internal medicine; Viral disease; Biology; Virus","score_opus":0.05010117064921968,"score_gpt":0.3868916744833614,"score_spread":0.3367905038341418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129855053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9810203,0.0006428293,0.016906783,0.000015696243,0.000024238776,0.0001369532,0.00022685096,0.00009951697,0.000926921],"genre_scores_gemma":[0.9890471,0.00016685687,0.009686664,0.00002178831,0.000018652994,0.00020141297,0.0002968778,0.000019076699,0.00054165046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9941705,0.0017548768,0.0004545141,0.0011231613,0.002142387,0.00035454828],"domain_scores_gemma":[0.9957417,0.0018287812,0.00079559296,0.0004345182,0.00091817736,0.00028130854],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036193305,0.0006148132,0.00065802137,0.0014150363,0.0002226039,0.00077551627,0.00039750873,0.00049675396,0.0007412999],"category_scores_gemma":[0.005645497,0.00035452796,0.0004059157,0.0007046762,0.00062571926,0.0003925893,0.00033694977,0.0005064585,0.00038525552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050727795,0.00083405996,0.43093565,0.0002698153,0.00019411802,0.00034414887,0.0015039849,0.0009588983,0.5141885,0.00018861049,0.00023022074,0.045279276],"study_design_scores_gemma":[0.00010269025,0.0044173305,0.7791088,0.000034844594,0.00014748466,0.0016674132,0.00039837367,0.009614655,0.20347865,0.00017651856,0.00078604795,0.00006715952],"about_ca_topic_score_codex":0.0008138256,"about_ca_topic_score_gemma":0.00070046075,"teacher_disagreement_score":0.0036193305,"about_ca_system_score_codex":0.0003242083,"about_ca_system_score_gemma":0.00024657726,"threshold_uncertainty_score":0.019141078},"labels":[],"label_agreement":null},{"id":"W2130043670","doi":"10.1128/jcm.00427-10","title":"Impact of Strain Type on Detection of Toxigenic <i>Clostridium difficile:</i> Comparison of Molecular Diagnostic and Enzyme Immunoassay Approaches","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital","funders":"","keywords":"Clostridium difficile; Immunoassay; Glutamate dehydrogenase; Microbiology; Clostridioides; Clostridiaceae; Medicine; Ribotyping; Virology; Biology; Polymerase chain reaction; Internal medicine; Antibiotics; Immunology; Toxin; Antibody","score_opus":0.07085528758305545,"score_gpt":0.399303954690109,"score_spread":0.32844866710705356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130043670","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99407804,0.0034986269,0.00079604913,0.00029571142,0.00015118752,0.0001516528,0.0001291833,0.000023621958,0.000875913],"genre_scores_gemma":[0.99743277,0.00037368407,0.001323595,0.0003335004,0.00007807003,0.00006634772,0.00020029678,0.000015947584,0.00017578091],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9856273,0.010347441,0.0008007076,0.0014640172,0.0013666778,0.0003937631],"domain_scores_gemma":[0.98110825,0.011551461,0.004004112,0.0010519295,0.0012358453,0.0010483583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018413877,0.0009164661,0.0014113683,0.0004953045,0.00018188193,0.0016886516,0.0006726973,0.0012899075,0.000909903],"category_scores_gemma":[0.020212138,0.00037778754,0.0010045919,0.0005008054,0.00075218966,0.00087481854,0.00039164507,0.00088297273,0.00034050934],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.39302164,0.0038546848,0.4802651,0.00059739576,0.0025126196,0.00019705507,0.00021409545,0.0018822209,0.02265577,0.00011253947,0.00062121375,0.0940656],"study_design_scores_gemma":[0.01731951,0.3917183,0.5364177,0.0002515561,0.005398716,0.0013023901,0.00024364695,0.010348209,0.034142926,0.00025684797,0.0024566355,0.00014359743],"about_ca_topic_score_codex":0.0002611953,"about_ca_topic_score_gemma":0.00040564395,"teacher_disagreement_score":0.018413877,"about_ca_system_score_codex":0.0003966162,"about_ca_system_score_gemma":0.00040859255,"threshold_uncertainty_score":0.09738302},"labels":[],"label_agreement":null},{"id":"W2130311744","doi":"10.1128/jcm.42.12.5578-5581.2004","title":"Detection of Methicillin-Resistant <i>Staphylococcus aureus</i> Directly from Nasal Swab Specimens by a Real-Time PCR Assay","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":224,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Staphylococcus aureus; Microbiology; Micrococcaceae; Methicillin-resistant Staphylococcus aureus; Staphylococcal infections; Polymerase chain reaction; Biology; Virology; Medicine; Bacteria; Gene; Genetics","score_opus":0.026452607070352286,"score_gpt":0.3292183384102861,"score_spread":0.3027657313399338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130311744","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8803918,0.00368839,0.10806976,0.0002468672,0.00019181972,0.0006824502,0.00248734,0.0009460085,0.0032955045],"genre_scores_gemma":[0.7533282,0.0022042363,0.23718508,0.00042796586,0.00010616173,0.0009220717,0.0030381335,0.00007934906,0.0027087473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982534,0.00040948525,0.00015649499,0.0005022494,0.00051481934,0.00016352494],"domain_scores_gemma":[0.9983346,0.00077839056,0.0003467884,0.00010281289,0.00035470494,0.000082780454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010942911,0.00082891714,0.0007780723,0.00087720575,0.00017108343,0.00076351454,0.000619381,0.00041258862,0.001263235],"category_scores_gemma":[0.0024847314,0.00033633644,0.0005154039,0.00045287306,0.00047755468,0.00027132683,0.00023832027,0.00060739444,0.0006890804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004410368,0.00015758607,0.02133204,0.00026083982,0.00003827439,0.00018509194,0.00020219674,0.00022675087,0.96156603,0.0000758768,0.00020146454,0.015312786],"study_design_scores_gemma":[0.000116568284,0.0028521742,0.06704011,0.000113732654,0.00022727548,0.0032204406,0.00036736327,0.009353765,0.9106097,0.00012379482,0.0058872793,0.00008774601],"about_ca_topic_score_codex":0.0017868581,"about_ca_topic_score_gemma":0.0024926234,"teacher_disagreement_score":0.0017868581,"about_ca_system_score_codex":0.0005182326,"about_ca_system_score_gemma":0.00057006924,"threshold_uncertainty_score":0.0057872534},"labels":[],"label_agreement":null},{"id":"W2130702578","doi":"10.1128/jcm.40.11.4056-4059.2002","title":"Confirmation by 16S rRNA PCR of the COBAS AMPLICOR CT/NG Test for Diagnosis of <i>Neisseria gonorrhoeae</i> Infection in a Low-Prevalence Population","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal General Hospital","funders":"","keywords":"Neisseria gonorrhoeae; Urine; Medicine; Population; Sex organ; Roche Diagnostics; Virology; Internal medicine; Microbiology; Biology","score_opus":0.05319410406700913,"score_gpt":0.36514082406994786,"score_spread":0.3119467200029387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130702578","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898539,0.0011433535,0.005298171,0.00019898596,0.00007965684,0.00032073614,0.00038674683,0.00016171382,0.0025568756],"genre_scores_gemma":[0.99203277,0.0004710649,0.0063854754,0.00018463764,0.00003911943,0.000074177326,0.00037481217,0.000027994136,0.00040986456],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978661,0.0006184382,0.00027551805,0.00032358244,0.0006493832,0.0002670667],"domain_scores_gemma":[0.99695396,0.00112427,0.00054041645,0.00013610469,0.00096818234,0.00027697254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025489307,0.0008631044,0.0008243109,0.0014935624,0.00048555763,0.00083263346,0.0005665235,0.00075675984,0.0011980382],"category_scores_gemma":[0.0075397375,0.00057233055,0.00050122326,0.0007381781,0.0006267718,0.00057112164,0.00043526714,0.0005573141,0.00079514703],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094767567,0.00027993848,0.854711,0.00039863773,0.000053951295,0.0040898086,0.0012592338,0.00022400398,0.12216195,0.00009675264,0.0007876334,0.014989382],"study_design_scores_gemma":[0.00010191077,0.0021942097,0.90655,0.0003275423,0.00021277253,0.009825464,0.0016483942,0.0054643545,0.069022305,0.0001473124,0.00443746,0.000068341535],"about_ca_topic_score_codex":0.0056401487,"about_ca_topic_score_gemma":0.0054402426,"teacher_disagreement_score":0.0056401487,"about_ca_system_score_codex":0.000340517,"about_ca_system_score_gemma":0.0006010108,"threshold_uncertainty_score":0.013480186},"labels":[],"label_agreement":null},{"id":"W2130776958","doi":"10.1128/jcm.06835-11","title":"Invasive Serogroup B Neisseria meningitidis in Québec, Canada, 2003 to 2010: Persistence of the ST-269 Clone Since It First Emerged in 2003","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"National Institutes of Health; European Commission; Wellcome Trust","keywords":"Neisseria meningitidis; Meningococcal disease; Conjugate vaccine; Serotype; Biology; Virology; clone (Java method); Meningococcal vaccine; Genotype; Microbiology; Neisseriaceae; Antibiotics; Bacteria; Genetics; Streptococcus pneumoniae; Gene","score_opus":0.04252769224660971,"score_gpt":0.2974575566253483,"score_spread":0.25492986437873855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130776958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9636673,0.007548931,0.00045624957,0.0016509434,0.00010387856,0.00021168443,0.017949257,0.00006481735,0.008346885],"genre_scores_gemma":[0.9874489,0.0032606246,0.00037161814,0.0005705072,0.000037855716,0.000034428995,0.004940875,0.000015070103,0.0033200677],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992291,0.000028177234,0.000041700718,0.0001327775,0.00031508063,0.00025324203],"domain_scores_gemma":[0.99710804,0.00006386068,0.00038070657,0.000044623408,0.0018332137,0.00056955975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057086005,0.0006331381,0.000470852,0.0017437523,0.003122032,0.0015353068,0.0014168756,0.00074938004,0.0020590376],"category_scores_gemma":[0.0016050731,0.00031294682,0.00047045387,0.0047111465,0.0008475876,0.0005862477,0.0006019291,0.0010843901,0.0002830291],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032455308,0.00010741634,0.9663468,0.00022313654,0.000127245,0.0006016316,0.0014199668,0.00031572353,0.0016075379,0.00017176023,0.0066640317,0.02209024],"study_design_scores_gemma":[0.000012709681,0.00004324604,0.9947554,0.00008383695,0.00003627989,0.0001822408,0.0010552082,0.00031409506,0.00014662855,0.000016268446,0.0033366713,0.000017369473],"about_ca_topic_score_codex":0.9982809,"about_ca_topic_score_gemma":0.9988458,"teacher_disagreement_score":0.039309267,"about_ca_system_score_codex":0.039309267,"about_ca_system_score_gemma":0.047356836,"threshold_uncertainty_score":0.28521},"labels":[],"label_agreement":null},{"id":"W2130816712","doi":"10.1128/jcm.41.9.4411-4414.2003","title":"Outbreak of Serogroup C Meningococcal Disease Caused by a Variant of <i>Neisseria meningitidis</i> Serotype 2a ET-15 in a Community of Men Who Have Sex with Men","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Public Health; Ministry of Health and Long Term Care; Health Canada","funders":"","keywords":"Neisseria meningitidis; Serotype; Meningococcal disease; Outbreak; Neisseriaceae; Virology; Microbiology; Biology; Neisseria; Bacteria; Antibiotics; Genetics","score_opus":0.024563489323739997,"score_gpt":0.3169096995533654,"score_spread":0.2923462102296254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130816712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981552,0.00015605427,0.00023099073,0.0002367849,0.00002996876,0.00008257022,0.000052662865,0.000015262392,0.0010404],"genre_scores_gemma":[0.99850637,0.00019117612,0.00035384184,0.0004521026,0.00014870806,0.000012978953,0.000068255125,0.0000048143506,0.00026173127],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.999405,0.00013527363,0.000042643183,0.00009668788,0.00012373811,0.0001966248],"domain_scores_gemma":[0.9989472,0.00020442344,0.00022275846,0.0000644153,0.00016946215,0.00039170604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004513922,0.0010235675,0.00046358226,0.0006050535,0.004035217,0.0009641272,0.00042315078,0.0019164216,0.0015804343],"category_scores_gemma":[0.0015814322,0.0005687095,0.0004440499,0.00045093973,0.0009973045,0.00060060393,0.0011074439,0.0016082964,0.00022488117],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00139095,0.0025735032,0.6485361,0.000488373,0.0003325925,0.29098302,0.01543097,0.00068795774,0.017138705,0.0004126731,0.0039053115,0.018119864],"study_design_scores_gemma":[0.00061570824,0.006097055,0.62623596,0.00019730441,0.00035957876,0.33040434,0.018131128,0.001605853,0.0061006607,0.0004421861,0.009658555,0.00015168247],"about_ca_topic_score_codex":0.014652291,"about_ca_topic_score_gemma":0.012315741,"teacher_disagreement_score":0.014652291,"about_ca_system_score_codex":0.0006331429,"about_ca_system_score_gemma":0.0007827142,"threshold_uncertainty_score":0.029133976},"labels":[],"label_agreement":null},{"id":"W2130827108","doi":"10.1128/jcm.02329-12","title":"Evaluation of a New Chromogenic Agar Medium for Detection of Shiga Toxin-Producing Escherichia coli (STEC) and Relative Prevalences of O157 and Non-O157 STEC in Manitoba, Canada","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada","funders":"Alere","keywords":"Serotype; STX2; Microbiology; Escherichia coli; Carriage; Chromogenic; Shiga toxin; Biology; Isolation (microbiology); Agar; Medicine; Bacteria; Chemistry","score_opus":0.06506608810869262,"score_gpt":0.36370473619033594,"score_spread":0.2986386480816433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130827108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915168,0.0021286642,0.002237905,0.00023422275,0.000052009233,0.00028646959,0.0008246788,0.00013179492,0.0025873918],"genre_scores_gemma":[0.9761273,0.002444014,0.015880631,0.0002431612,0.000030487801,0.00013423989,0.0023979817,0.00004160343,0.0027006178],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99545515,0.00044245037,0.00027124534,0.0004802854,0.0030549099,0.00029600618],"domain_scores_gemma":[0.99498594,0.0006690701,0.00059108244,0.00014608879,0.003031316,0.00057646265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001813666,0.00087391457,0.00050739804,0.003017057,0.0015870746,0.0018573313,0.002126013,0.0005559164,0.0008002716],"category_scores_gemma":[0.0031117068,0.00062406063,0.00037748046,0.00221174,0.0014475962,0.0005236102,0.0010492351,0.0006394172,0.00030037915],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023209185,0.0011627929,0.6541229,0.00065683114,0.00028195314,0.0008434432,0.0026656894,0.0014696773,0.2829752,0.0002596122,0.0009937285,0.052247312],"study_design_scores_gemma":[0.00015618936,0.005512429,0.8752019,0.00019124587,0.00038029646,0.0020898045,0.0027745594,0.008069052,0.094608724,0.000043306954,0.010814681,0.00015779478],"about_ca_topic_score_codex":0.841735,"about_ca_topic_score_gemma":0.93631226,"teacher_disagreement_score":0.158265,"about_ca_system_score_codex":0.011646165,"about_ca_system_score_gemma":0.012579363,"threshold_uncertainty_score":0.31839406},"labels":[],"label_agreement":null},{"id":"W2130983373","doi":"10.1128/jcm.41.3.1280-1284.2003","title":"Molecular Characterization of Avian Paramyxovirus 1 Isolates Collected from Cormorants in Canada from 1995 to 2000","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Genotype; Virulence; Biology; Virology; Cleavage (geology); Gene; Genetics","score_opus":0.022484656021111604,"score_gpt":0.3104230439010538,"score_spread":0.2879383878799422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130983373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954567,0.000489921,0.00022644334,0.000059519585,0.000015158465,0.00007177242,0.0023538882,0.000010998053,0.0013155492],"genre_scores_gemma":[0.9852739,0.00069858204,0.0012684145,0.00017504655,0.000013150055,0.000037492042,0.008779234,0.000014199101,0.0037399984],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99957997,0.000009848775,0.000016977685,0.00007558591,0.00015081391,0.00016686368],"domain_scores_gemma":[0.99926156,0.000033158813,0.00011541444,0.000017542057,0.00041015996,0.00016222274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017561692,0.0006735226,0.00038242986,0.0016191824,0.0015705887,0.00094655104,0.00049252046,0.00039682575,0.0007465602],"category_scores_gemma":[0.0006189514,0.00025431954,0.00026724598,0.0013777523,0.0004343793,0.00014642543,0.00025964176,0.00055443076,0.00026976116],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072106294,0.00019450615,0.5799253,0.00025309034,0.00011220678,0.0026121833,0.0035635529,0.0005912563,0.39143395,0.00021316664,0.0015640191,0.018815614],"study_design_scores_gemma":[0.000010850696,0.00014669745,0.9860475,0.00002640112,0.000027274431,0.0006026635,0.0012688967,0.00016648906,0.008294159,0.000010629586,0.0033869594,0.000011413879],"about_ca_topic_score_codex":0.8643977,"about_ca_topic_score_gemma":0.92322266,"teacher_disagreement_score":0.1356023,"about_ca_system_score_codex":0.007238762,"about_ca_system_score_gemma":0.004344411,"threshold_uncertainty_score":0.2728017},"labels":[],"label_agreement":null},{"id":"W2131185071","doi":"10.1128/jcm.43.7.3129-3135.2005","title":"Detection of <i>Pseudomonas aeruginosa</i> Producing Metallo-β-Lactamases in a Large Centralized Laboratory","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":332,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Pseudomonas aeruginosa; Microbiology; Pseudomonadaceae; Pseudomonadales; Biology; Bacteria; Genetics","score_opus":0.01491993656826961,"score_gpt":0.3149881164917679,"score_spread":0.30006817992349827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131185071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98210114,0.00083813776,0.0127648795,0.00022758548,0.00002908003,0.00043491262,0.00026590188,0.0010503443,0.0022880735],"genre_scores_gemma":[0.9828736,0.0002860937,0.015701279,0.00016922275,0.00005614158,0.00008626542,0.0003757668,0.000021534888,0.00043017173],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9953754,0.0012031958,0.00027404123,0.0012903729,0.001583262,0.00027366908],"domain_scores_gemma":[0.9931496,0.0020179432,0.0016383441,0.0009056334,0.0014580855,0.00083036977],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029086734,0.0004989169,0.00050341955,0.00092397124,0.0005938134,0.0015328616,0.0010185519,0.00046186466,0.0008154643],"category_scores_gemma":[0.0040769083,0.00033315265,0.0002414148,0.0006091307,0.0010264614,0.0006221561,0.00078754214,0.00045279015,0.0005921007],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009861562,0.0007484276,0.54695964,0.00031621085,0.000095295865,0.0010425401,0.00086624676,0.0007301381,0.3692162,0.000105516316,0.0008351985,0.07809842],"study_design_scores_gemma":[0.00024753122,0.00759314,0.80200934,0.00013633375,0.000265526,0.0054029888,0.0012034907,0.005560606,0.1730917,0.00012411813,0.004272443,0.000092693015],"about_ca_topic_score_codex":0.005235679,"about_ca_topic_score_gemma":0.0046024797,"teacher_disagreement_score":0.005235679,"about_ca_system_score_codex":0.0011582898,"about_ca_system_score_gemma":0.0015891243,"threshold_uncertainty_score":0.015382767},"labels":[],"label_agreement":null},{"id":"W2131188188","doi":"10.1128/jcm.39.2.696-704.2001","title":"Typing and Subtyping Influenza Virus Using DNA Microarrays and Multiplex Reverse Transcriptase PCR","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Institutes of Health Research; Ontario Innovation Trust","keywords":"Subtyping; Biology; Multiplex; DNA microarray; Multiplex polymerase chain reaction; Typing; Influenza A virus; Neuraminidase; Virology; Hybridization probe; Polymerase chain reaction; Reverse transcriptase; Virus; Molecular biology; Gene; Genetics; Gene expression","score_opus":0.0792644008464865,"score_gpt":0.3593240835055204,"score_spread":0.2800596826590339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131188188","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32450595,0.0027813804,0.6629259,0.00023625458,0.00019266362,0.0007713383,0.0032203083,0.001935283,0.0034309125],"genre_scores_gemma":[0.24522127,0.002339463,0.7438898,0.00013741881,0.000055824377,0.001221726,0.0024917338,0.00010472653,0.0045380746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990182,0.00023310281,0.00006546548,0.00031541093,0.0002819256,0.00008589336],"domain_scores_gemma":[0.9995957,0.0002169672,0.000051103347,0.000045321452,0.000061237406,0.000029610894],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010303785,0.00078826665,0.0006893044,0.0010515462,0.00030544092,0.00070535386,0.0005488712,0.00060817186,0.0009733527],"category_scores_gemma":[0.0009110755,0.00044730905,0.00038887805,0.0006106927,0.0003303076,0.00049759774,0.00033144478,0.0007700602,0.0008986343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003839707,0.000024082276,0.00023041583,0.000037587706,0.000004072179,0.000017439595,0.000016362685,0.00022940416,0.994718,0.00013853436,0.00007236802,0.0044734525],"study_design_scores_gemma":[0.00000892967,0.00018542071,0.0015860434,0.000009988669,0.000018809285,0.00014606578,0.000034245026,0.010117228,0.9831791,0.0002826875,0.004411821,0.000019661402],"about_ca_topic_score_codex":0.00039549186,"about_ca_topic_score_gemma":0.0010335905,"teacher_disagreement_score":0.0010515462,"about_ca_system_score_codex":0.0003720295,"about_ca_system_score_gemma":0.00018297519,"threshold_uncertainty_score":0.0054492354},"labels":[],"label_agreement":null},{"id":"W2131264071","doi":"10.1128/jcm.00593-07","title":"First Contemporary Case of Human Infection with <i>Cryptococcus gattii</i> in Puget Sound: Evidence for Spread of the Vancouver Island Outbreak","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Washington","keywords":"Cryptococcus gattii; Outbreak; Cryptococcosis; Sound (geography); Genotyping; Genotype; Geography; Virology; Biology; Immunology; Genetics","score_opus":0.10766770418411187,"score_gpt":0.4202733446814499,"score_spread":0.312605640497338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131264071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860573,0.0009382522,0.0005973291,0.0013681016,0.00010434612,0.00008115193,0.00012256403,0.000037263246,0.010693753],"genre_scores_gemma":[0.99753547,0.0004899913,0.00029760943,0.0008079639,0.00011546687,0.000005776229,0.000069644106,0.000006902068,0.00067114155],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9994425,0.00008432071,0.00003572114,0.000112175985,0.00013071684,0.00019458706],"domain_scores_gemma":[0.99885225,0.00021519414,0.00019500646,0.000091153604,0.00019108538,0.0004552294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002557649,0.0008909145,0.0004715655,0.00082725496,0.0042927507,0.0012479257,0.0010249751,0.00315165,0.0022988631],"category_scores_gemma":[0.001741481,0.00083684915,0.00034387765,0.00085971656,0.0013815607,0.0007153988,0.0012027085,0.0028451183,0.0003855066],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039765253,0.00066247775,0.21849807,0.00018209142,0.000087601016,0.73907036,0.010531043,0.00032148184,0.0046910113,0.0004093965,0.0071093184,0.018039485],"study_design_scores_gemma":[0.000079806174,0.0017347649,0.16105753,0.00022751061,0.000100809535,0.81340116,0.0071529173,0.000531734,0.0010880606,0.00020028629,0.014363434,0.000062025276],"about_ca_topic_score_codex":0.07706459,"about_ca_topic_score_gemma":0.13723214,"teacher_disagreement_score":0.07706459,"about_ca_system_score_codex":0.0017711762,"about_ca_system_score_gemma":0.001320572,"threshold_uncertainty_score":0.15323204},"labels":[],"label_agreement":null},{"id":"W2131272750","doi":"10.1128/jcm.44.3.1084-1086.2006","title":"Use of Flocked Swabs and a Universal Transport Medium To Enhance Molecular Detection of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Nucleic Acid Amplification Tests; Nucleic acid; Microbiology; Chlamydia; Chlamydiales; Chlamydiaceae; Neisseriaceae; Virology; Biology; Neisseria; Bacteria; Immunology; Antibiotics; Genetics","score_opus":0.019204298541417586,"score_gpt":0.32377808256658636,"score_spread":0.30457378402516877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131272750","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96989644,0.0012735485,0.025948668,0.00010266014,0.00025809492,0.0005422464,0.000186491,0.00024101252,0.0015508886],"genre_scores_gemma":[0.8305977,0.0011373572,0.16331862,0.00031923974,0.00011908692,0.00064491894,0.0013309029,0.000094315714,0.002437827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849916,0.0003702144,0.0002213782,0.00044732762,0.0003296978,0.00013222412],"domain_scores_gemma":[0.9979298,0.000918079,0.00032257586,0.00033007844,0.00034021382,0.0001591639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013772309,0.0010184408,0.00064947223,0.00052543054,0.00022586944,0.00056715513,0.0005364806,0.00075391086,0.0015566977],"category_scores_gemma":[0.0023801993,0.0005935186,0.0004927196,0.00021620757,0.00047711562,0.000803193,0.00072238466,0.00075276184,0.0005636667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020447694,0.00015592085,0.002110611,0.00010903752,0.000017927076,0.00003273766,0.000036097903,0.000032491906,0.99347055,0.000032521915,0.000027884187,0.003769713],"study_design_scores_gemma":[0.00003921355,0.0029324186,0.019894289,0.000034833578,0.000098950586,0.00094992603,0.00005369619,0.00071034784,0.9737881,0.000022831831,0.0014535496,0.000021788568],"about_ca_topic_score_codex":0.0010141191,"about_ca_topic_score_gemma":0.0020014464,"teacher_disagreement_score":0.0015566977,"about_ca_system_score_codex":0.00020850323,"about_ca_system_score_gemma":0.00038736456,"threshold_uncertainty_score":0.0072835684},"labels":[],"label_agreement":null},{"id":"W2131765762","doi":"10.1128/jcm.02068-14","title":"Evaluation of Five Chromogenic Agar Media and the Rosco Rapid Carb Screen Kit for Detection and Confirmation of Carbapenemase Production in Gram-Negative Bacilli","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Chromogenic; Microbiology; Agar; Bacilli; Agar plate; Biology; Bacteria; Chromatography; Chemistry","score_opus":0.029512602877770033,"score_gpt":0.3303858473413714,"score_spread":0.30087324446360136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131765762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8780003,0.0051337327,0.10692463,0.00040123073,0.00026495892,0.0027875805,0.0023475706,0.00097493164,0.003165129],"genre_scores_gemma":[0.68209,0.0038321663,0.303743,0.00016849412,0.000060084327,0.0017731143,0.0054232827,0.00018228916,0.0027275686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9853822,0.0040032812,0.0019194493,0.00170462,0.006375138,0.00061535125],"domain_scores_gemma":[0.99301517,0.0017532505,0.0012443978,0.00067239953,0.0025441227,0.0007706805],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006793088,0.0022940265,0.0014487118,0.004092543,0.0006142117,0.0012991714,0.0022672866,0.0012580018,0.0009016297],"category_scores_gemma":[0.00813049,0.00095346314,0.0012385796,0.0022923388,0.0009176212,0.0008757743,0.0021584148,0.0006196975,0.0008036926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043719625,0.0023576352,0.0353275,0.0011432266,0.00034086138,0.00050348765,0.00044852565,0.0022781487,0.8973851,0.00040095337,0.00043340647,0.0550092],"study_design_scores_gemma":[0.00015138031,0.0065919864,0.03325239,0.0001368283,0.0004182129,0.0017636856,0.00022666977,0.0068192645,0.94756883,0.00014150313,0.0027860168,0.00014334246],"about_ca_topic_score_codex":0.0026446674,"about_ca_topic_score_gemma":0.004168597,"teacher_disagreement_score":0.006793088,"about_ca_system_score_codex":0.0006825403,"about_ca_system_score_gemma":0.0017506076,"threshold_uncertainty_score":0.035925686},"labels":[],"label_agreement":null},{"id":"W2131821874","doi":"10.1128/jcm.00224-07","title":"Prevalence of PCR Ribotypes among <i>Clostridium difficile</i> Isolates from Pigs, Calves, and Other Species","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":270,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Clostridium difficile; Biology; Ribotyping; Microbiology; Clostridiaceae; Polymerase chain reaction; Clostridium; Bacteria; Veterinary medicine; Gene; Genetics; Antibiotics; Toxin; Medicine","score_opus":0.047639365072481496,"score_gpt":0.35338148242948975,"score_spread":0.30574211735700824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131821874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99908113,0.00014393433,0.00013143133,0.000007756545,0.0000023357456,0.0000057291495,0.00015524634,0.0000062080185,0.00046616342],"genre_scores_gemma":[0.9986761,0.00015623028,0.00037369967,0.00003565558,0.0000049708156,0.000009728329,0.0004504754,0.000004582515,0.000288502],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99929976,0.00015358531,0.00007495651,0.00014773353,0.00013998378,0.00018398241],"domain_scores_gemma":[0.99876934,0.00050387013,0.0003132863,0.000046234854,0.00021258199,0.00015478741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006526828,0.00028130953,0.0002345476,0.0011706114,0.00021162914,0.00044936917,0.00020794239,0.00040070657,0.0015668111],"category_scores_gemma":[0.0014681896,0.00020299527,0.0002584486,0.00036761427,0.00038083436,0.00028357256,0.00019839994,0.00019950414,0.00032109657],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006420203,0.00011072753,0.83585215,0.00018494646,0.000106368105,0.0006821898,0.0008754158,0.00016200633,0.14998691,0.000050575436,0.00019032185,0.011156311],"study_design_scores_gemma":[0.000009248605,0.0008643542,0.9877616,0.000038138656,0.000053709904,0.0017606418,0.0005710532,0.00015207483,0.008250403,0.000017599004,0.0005066046,0.000014503272],"about_ca_topic_score_codex":0.0024914558,"about_ca_topic_score_gemma":0.0030606845,"teacher_disagreement_score":0.0024914558,"about_ca_system_score_codex":0.00019191581,"about_ca_system_score_gemma":0.00012556252,"threshold_uncertainty_score":0.0052414536},"labels":[],"label_agreement":null},{"id":"W2131829756","doi":"10.1128/jcm.39.3.949-953.2001","title":"Prevalence and Antifungal Susceptibility of 442 <i>Candida</i> Isolates from Blood and Other Normally Sterile Sites: Results of a 2-Year (1996 to 1998) Multicenter Surveillance Study in Quebec, Canada","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Montreal General Hospital; Centre Hospitalier de l’Université de Montréal; Hôtel-Dieu de Québec; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Corpus albicans; Microbiology; Fluconazole; Candida tropicalis; Itraconazole; Biology; Candida parapsilosis; Amphotericin B; Candida albicans; Fungemia; Candida glabrata; Antifungal","score_opus":0.02477740161239752,"score_gpt":0.32225078082899883,"score_spread":0.29747337921660133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131829756","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99730504,0.0005187804,0.00007732474,0.000069294016,0.0000029946334,0.000024611592,0.0014105209,0.000010873377,0.0005805356],"genre_scores_gemma":[0.99776244,0.0002914575,0.00021631806,0.00010358437,0.000004299156,0.00001169266,0.0012189907,0.0000033767026,0.00038787187],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950373,0.000049610695,0.000028582886,0.00010038041,0.00016567396,0.0001520259],"domain_scores_gemma":[0.9987953,0.00006964499,0.00026943252,0.000022592205,0.0005848803,0.00025812985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003648957,0.0004396346,0.00034890618,0.0008604438,0.0010404628,0.00080573343,0.00072284875,0.00052028586,0.0008837294],"category_scores_gemma":[0.0008524242,0.0002864302,0.00024193093,0.0016913788,0.0004717674,0.0002192921,0.0002470267,0.0003805165,0.00019619275],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073231095,0.000032960153,0.9945943,0.000025300002,0.00003677802,0.0001466834,0.00026833764,0.000064646614,0.0010207586,0.0000101013475,0.00058868463,0.0031383235],"study_design_scores_gemma":[0.0000054485404,0.000041711097,0.99902225,0.000008194562,0.000010349556,0.00013385998,0.00017484042,0.00013918187,0.00012121333,0.0000014149504,0.00033802202,0.0000036236997],"about_ca_topic_score_codex":0.9460108,"about_ca_topic_score_gemma":0.952283,"teacher_disagreement_score":0.053989172,"about_ca_system_score_codex":0.008205699,"about_ca_system_score_gemma":0.0029838756,"threshold_uncertainty_score":0.10861421},"labels":[],"label_agreement":null},{"id":"W2131878862","doi":"10.1128/jcm.43.5.2375-2379.2005","title":"Detection of <i>Cyclospora cayetanensis</i> Oocysts in Human Fecal Specimens by Flow Cytometry","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"Health Canada; Ontario Ministry of Health and Long-Term Care","keywords":"Flow cytometry; Cyclospora cayetanensis; Cyclospora; Biology; Feces; Microscopy; Cytometry; Stain; Fluorescence microscope; Microbiology; Staining; Cryptosporidium; Pathology; Molecular biology; Medicine; Fluorescence","score_opus":0.018893099423659635,"score_gpt":0.3386687504063242,"score_spread":0.3197756509826646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131878862","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98154896,0.0011089804,0.011424387,0.00017619837,0.00003865172,0.00036560092,0.0013380883,0.00029300366,0.003706194],"genre_scores_gemma":[0.9528877,0.0016358781,0.04002565,0.0002839454,0.00002659106,0.00022636268,0.0026829194,0.000026070576,0.0022048098],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99972457,0.0000460396,0.000028090084,0.00006569264,0.00009216456,0.0000434124],"domain_scores_gemma":[0.99977285,0.000052348958,0.000037409936,0.000015467742,0.00009588082,0.000026107453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045094767,0.00022452103,0.00019033399,0.00066612975,0.00029575598,0.00043275335,0.00020554673,0.00026525534,0.00086790207],"category_scores_gemma":[0.00049322686,0.00009407607,0.00012584384,0.00044445047,0.00032721972,0.00015042133,0.00013965006,0.00016808156,0.0002393676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020531616,0.00006547958,0.0449806,0.0001291871,0.000013908433,0.000113469316,0.00014250196,0.00014068591,0.9447036,0.000075617725,0.0003089238,0.009120665],"study_design_scores_gemma":[0.000082760074,0.0014463135,0.41094452,0.000085307554,0.00009159796,0.0016931532,0.00053964136,0.0059447195,0.5665021,0.00015069135,0.012473384,0.0000458546],"about_ca_topic_score_codex":0.023227712,"about_ca_topic_score_gemma":0.031080348,"teacher_disagreement_score":0.023227712,"about_ca_system_score_codex":0.0008207717,"about_ca_system_score_gemma":0.0006497211,"threshold_uncertainty_score":0.046185017},"labels":[],"label_agreement":null},{"id":"W2132081769","doi":"10.1128/jcm.44.4.1219-1223.2006","title":"Evaluation of the IDI-MRSA Assay for Detection of Methicillin-Resistant <i>Staphylococcus aureus</i> from Nasal and Rectal Specimens Pooled in a Selective Broth","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Micrococcaceae; Predictive value; Staphylococcal infections; Biology; Positive predicative value; Meticillin; Medicine; Bacteria; Antibiotics; Antibacterial agent; Internal medicine","score_opus":0.041571028858202026,"score_gpt":0.35935440927985696,"score_spread":0.31778338042165494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132081769","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97468287,0.0021478622,0.02094502,0.00010764088,0.000041443487,0.00016347898,0.00046372015,0.00020299142,0.0012449872],"genre_scores_gemma":[0.9533846,0.00067151134,0.044397276,0.00008770818,0.00001607235,0.00010394309,0.0007889052,0.000023367922,0.0005266445],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99692756,0.000936448,0.00024370103,0.0004850268,0.0012369717,0.00017032116],"domain_scores_gemma":[0.9977024,0.0010036366,0.0002824275,0.00016409186,0.0006803923,0.00016698889],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021705157,0.00064371165,0.0006122432,0.0006074373,0.00015505406,0.00049197365,0.0006111833,0.00044964024,0.0005485284],"category_scores_gemma":[0.0041660345,0.00033537426,0.0003030442,0.00037249154,0.00028187278,0.00025815086,0.00036695076,0.00046566335,0.00044340992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010535513,0.00031845257,0.057201274,0.00028117764,0.00006273969,0.0002392061,0.00015685857,0.00061899325,0.9221277,0.000047633846,0.0001606427,0.01773169],"study_design_scores_gemma":[0.000109961824,0.007295248,0.12432723,0.00008822916,0.00025687157,0.0051846723,0.00017924645,0.018824246,0.84148574,0.000033834127,0.002150823,0.000063874446],"about_ca_topic_score_codex":0.0013006422,"about_ca_topic_score_gemma":0.0017738272,"teacher_disagreement_score":0.0021705157,"about_ca_system_score_codex":0.0002869624,"about_ca_system_score_gemma":0.00045051545,"threshold_uncertainty_score":0.0114789605},"labels":[],"label_agreement":null},{"id":"W2132203954","doi":"10.1128/jcm.02147-10","title":"Aptima HPV E6/E7 mRNA Test Is as Sensitive as Hybrid Capture 2 Assay but More Specific at Detecting Cervical Precancer and Cancer","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dr. H. Bliss Murphy Cancer Centre; Thunder Bay Regional Health Sciences Centre; Queen Elizabeth II Health Sciences Centre; Université de Montréal; Centre Hospitalier de l’Université de Montréal; Royal University Hospital; Memorial University of Newfoundland","funders":"","keywords":"Colposcopy; Cervical intraepithelial neoplasia; Medicine; Cervical cancer; Confidence interval; Gynecology; Genotyping; Population; Internal medicine; Papillomaviridae; Cancer; Oncology; Genotype; Biology; Gene; Genetics","score_opus":0.043012311278641246,"score_gpt":0.4044064669609954,"score_spread":0.36139415568235417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132203954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9158632,0.021076124,0.02873056,0.0004746197,0.00035999442,0.0007996268,0.0056367675,0.0013898978,0.02566932],"genre_scores_gemma":[0.9451816,0.0041976385,0.02766306,0.00058915606,0.0002032192,0.00046273187,0.0043102857,0.000105961044,0.017286167],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9973074,0.0008154434,0.00016051,0.00059533055,0.00096171274,0.00015957974],"domain_scores_gemma":[0.99815696,0.0007179994,0.00038246275,0.0001440774,0.00046303976,0.00013555925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002318771,0.0008969465,0.0013979777,0.0027652332,0.00032397255,0.0008429716,0.00042074063,0.0008560544,0.006162225],"category_scores_gemma":[0.0027148086,0.0004892451,0.00061520643,0.0014323,0.0005134404,0.00054243125,0.00045898336,0.00051484245,0.0017003978],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046220757,0.0007748356,0.58514786,0.0011186192,0.00066491176,0.0010751829,0.0003902395,0.00073372107,0.24724399,0.0007970818,0.005873066,0.15155849],"study_design_scores_gemma":[0.00022071955,0.003984472,0.8569625,0.00012543892,0.00053214544,0.014206713,0.00019386197,0.0032500608,0.09623888,0.0005677855,0.023608629,0.00010877139],"about_ca_topic_score_codex":0.0011915739,"about_ca_topic_score_gemma":0.0027967282,"teacher_disagreement_score":0.006162225,"about_ca_system_score_codex":0.00045304143,"about_ca_system_score_gemma":0.0003283538,"threshold_uncertainty_score":0.020614684},"labels":[],"label_agreement":null},{"id":"W2132209704","doi":"10.1128/jcm.02082-09","title":"Development of Real-Time PCR Assays for Detection of the <i>Streptococcus milleri</i> Group from Cystic Fibrosis Clinical Specimens by Targeting the <i>cpn60</i> and 16S rRNA Genes","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Streptococcus anginosus; Streptococcus milleri; Biology; 16S ribosomal RNA; Microbiology; Streptococcus intermedius; Ribosomal RNA; Polymerase chain reaction; Streptococcus; 23S ribosomal RNA; Sputum; Gene; Bacteria; Genetics; Pathology; Medicine","score_opus":0.024888248512299916,"score_gpt":0.34651301547512564,"score_spread":0.3216247669628257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132209704","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.56384087,0.0027143206,0.42274323,0.00041089667,0.00050762563,0.0018474081,0.0019550992,0.0018977387,0.004082794],"genre_scores_gemma":[0.32969284,0.0015656813,0.6575403,0.00056373235,0.00012468928,0.003577994,0.0030372601,0.00015957432,0.0037379484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99696547,0.00078198203,0.00033604127,0.00089464046,0.0007579837,0.00026396764],"domain_scores_gemma":[0.99827313,0.00076747534,0.00037520428,0.00012004618,0.00036530473,0.00009882643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002014905,0.0014197762,0.0010690877,0.0010390328,0.00022559093,0.00081028574,0.00096333167,0.000990047,0.0011295651],"category_scores_gemma":[0.0029685928,0.0007595645,0.0008345116,0.0005543777,0.0006839532,0.0005962964,0.0005985886,0.001131545,0.0008650515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021050901,0.00017304145,0.0017203068,0.0001722104,0.000017661474,0.000058780588,0.00013563152,0.0005248954,0.98916477,0.00022049672,0.00010289883,0.0074987756],"study_design_scores_gemma":[0.00004833686,0.001162017,0.003933432,0.00006454834,0.000057080244,0.0002805224,0.00012795207,0.013529513,0.9768629,0.00023604429,0.003648792,0.000048885893],"about_ca_topic_score_codex":0.000275155,"about_ca_topic_score_gemma":0.0004476622,"teacher_disagreement_score":0.002014905,"about_ca_system_score_codex":0.00032962312,"about_ca_system_score_gemma":0.0005337862,"threshold_uncertainty_score":0.01065594},"labels":[],"label_agreement":null},{"id":"W2132453639","doi":"10.1128/jcm.38.12.4569-4576.2000","title":"<i>Acrophialophora fusispora</i>Brain Abscess in a Child with Acute Lymphoblastic Leukemia: Review of Cases and Taxonomy","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Brain abscess; Itraconazole; Neutropenia; Abscess; Surgery; Amphotericin B; Radiology; Chemotherapy; Gastroenterology; Internal medicine; Antifungal; Dermatology","score_opus":0.029343330532863445,"score_gpt":0.33575667121182534,"score_spread":0.3064133406789619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132453639","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13748384,0.84134173,0.0020880108,0.0024534597,0.0007158677,0.00014311442,0.00047082032,0.00021633717,0.015086747],"genre_scores_gemma":[0.42784604,0.5632642,0.002783309,0.001381331,0.0017908554,0.000055557535,0.0006847768,0.000051251256,0.0021427614],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99932826,0.00009346939,0.00026441517,0.00011578409,0.00009890221,0.0000991835],"domain_scores_gemma":[0.9991872,0.00022429581,0.0003934409,0.000035381894,0.00007725759,0.00008245782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003263891,0.00093714986,0.0007632839,0.0047276667,0.00080229196,0.0015144214,0.0012544582,0.0015242179,0.0014748008],"category_scores_gemma":[0.0010428076,0.00045452538,0.0005158232,0.004403218,0.0013783356,0.0017739792,0.000855804,0.0010128176,0.0009747963],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017125235,0.00019166774,0.07592455,0.0065689697,0.00012681422,0.72475076,0.0021547882,0.00047620456,0.0043484564,0.0018268424,0.017260527,0.16619919],"study_design_scores_gemma":[0.000008512585,0.00007373202,0.01939034,0.0012988476,0.00007634609,0.9346096,0.00094561506,0.00015141502,0.00072201935,0.00039403088,0.042300705,0.000028840082],"about_ca_topic_score_codex":0.0024545523,"about_ca_topic_score_gemma":0.0026215233,"teacher_disagreement_score":0.0047276667,"about_ca_system_score_codex":0.0005483862,"about_ca_system_score_gemma":0.0006779226,"threshold_uncertainty_score":0.004933715},"labels":[],"label_agreement":null},{"id":"W2132621688","doi":"10.1128/jcm.44.5.1625-1629.2006","title":"Emergence of an Invasive Clone of Nontoxigenic <i>Corynebacterium diphtheriae</i> in the Urban Poor Population of Vancouver, Canada","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Vancouver Coastal Health; St. Paul's Hospital; University of British Columbia; Providence Health Care","funders":"British Columbia Centre for Disease Control; Public Health Agency","keywords":"Corynebacterium diphtheriae; Bacteremia; Ribotyping; Population; Microbiology; Diphtheria; clone (Java method); Biology; Virology; Medicine; Antibiotics; Genotype; Vaccination; Environmental health","score_opus":0.010154579255422251,"score_gpt":0.27019596035845134,"score_spread":0.2600413811030291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132621688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990446,0.00012896418,0.00008512289,0.00003777965,0.0000035155665,0.000019342588,0.00009943507,0.0000035103033,0.0005776464],"genre_scores_gemma":[0.99905735,0.00020057405,0.00009995079,0.000056606244,0.0000031771929,0.000003491421,0.00016541357,0.0000021650587,0.00041123285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996321,0.000017997743,0.000013861523,0.00005996004,0.00012776942,0.00014833844],"domain_scores_gemma":[0.99928015,0.00003781069,0.000112035144,0.000029696126,0.00029695008,0.00024339782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013236837,0.00023045004,0.00024297164,0.0007770805,0.0018644664,0.0009586845,0.00038200247,0.0002841796,0.0008314696],"category_scores_gemma":[0.0006858462,0.00026643544,0.0001316107,0.00083463837,0.0006016498,0.00014117343,0.0004929587,0.00058197515,0.00011869966],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013061501,0.000045630248,0.978884,0.000034216795,0.000018418272,0.0019456042,0.0018471335,0.000052994088,0.007289854,0.000030779625,0.00036996894,0.009350842],"study_design_scores_gemma":[0.00000857376,0.00007249391,0.9933837,0.000015703885,0.000014060208,0.002427723,0.0025192958,0.00010750065,0.0007501074,0.00000926062,0.00068273855,0.000008908246],"about_ca_topic_score_codex":0.8373031,"about_ca_topic_score_gemma":0.9093934,"teacher_disagreement_score":0.1626969,"about_ca_system_score_codex":0.002989318,"about_ca_system_score_gemma":0.0033088874,"threshold_uncertainty_score":0.3273101},"labels":[],"label_agreement":null},{"id":"W2132911898","doi":"10.1128/jcm.00175-15","title":"Isolation of Bordetella bronchiseptica from Blood and a Pancreatic Abscess","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"","keywords":"Bordetella bronchiseptica; Isolation (microbiology); Microbiology; Abscess; Bordetella; Biology; Medicine; Bacteria; Bordetella pertussis; Surgery","score_opus":0.04478583570530669,"score_gpt":0.33657205283244934,"score_spread":0.29178621712714264,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132911898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98889226,0.0024305375,0.0019959935,0.00083254086,0.0002223762,0.000119049946,0.0002019457,0.000064169,0.005241186],"genre_scores_gemma":[0.9950203,0.001837653,0.0014216745,0.00035073643,0.00025395912,0.000025096653,0.00019103556,0.00002254959,0.000877028],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9991486,0.00014888034,0.00015163125,0.00013994044,0.00020854567,0.00020241295],"domain_scores_gemma":[0.9986425,0.0005319899,0.00019699185,0.00011114384,0.00014553861,0.0003716967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004561198,0.0012251245,0.00084769214,0.0016602095,0.0016233425,0.0014435559,0.00060146063,0.002204835,0.0013556734],"category_scores_gemma":[0.0030172535,0.0009612697,0.0006919588,0.0009016881,0.0009682333,0.001047934,0.0012210034,0.0016588728,0.0008860285],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086082675,0.0005701309,0.06582665,0.0004522774,0.00006160268,0.80466676,0.0027662632,0.00015984099,0.114405654,0.0004237229,0.00087324873,0.0089331],"study_design_scores_gemma":[0.000087169705,0.00081641215,0.07008376,0.00015525683,0.00017059075,0.88469017,0.0034229464,0.00048513713,0.03593843,0.00027479528,0.003806614,0.00006877814],"about_ca_topic_score_codex":0.002672203,"about_ca_topic_score_gemma":0.0013136863,"teacher_disagreement_score":0.002672203,"about_ca_system_score_codex":0.00044777576,"about_ca_system_score_gemma":0.00048531702,"threshold_uncertainty_score":0.0053132772},"labels":[],"label_agreement":null},{"id":"W2133211243","doi":"10.1128/jcm.01551-08","title":"Use of <i>Bordetella pertussis</i> BP3385 To Establish a Cutoff Value for an IS <i>481</i> -Targeted Real-Time PCR Assay","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Toronto Public Health","funders":"","keywords":"Bordetella pertussis; Cutoff; Whooping cough; Polymerase chain reaction; Virology; Biology; Microbiology; Real-time polymerase chain reaction; Bordetella; Bacteria; Genetics; Gene; Physics","score_opus":0.07719679309276041,"score_gpt":0.3459130672168508,"score_spread":0.2687162741240904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133211243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7848191,0.0028558597,0.1901216,0.0006503428,0.0006338951,0.0007884608,0.001489442,0.0016208473,0.01702046],"genre_scores_gemma":[0.79453486,0.0010741455,0.1931209,0.0006091848,0.000096211894,0.0012830248,0.0029339672,0.00035438914,0.0059932605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965037,0.0008419261,0.0003239658,0.0009503621,0.0008193075,0.00056069496],"domain_scores_gemma":[0.997352,0.0010252144,0.00032608138,0.00031530438,0.0007934254,0.00018799766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025092808,0.0012561937,0.0013591349,0.0010133138,0.0007835907,0.0016195687,0.00096325873,0.0014557429,0.0032684759],"category_scores_gemma":[0.003739465,0.00071999186,0.0007560905,0.00089998904,0.001055382,0.0008574696,0.00050229195,0.0021209721,0.0024580997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027743023,0.00012597597,0.0021852066,0.00014242354,0.00001389268,0.000050386807,0.00012979947,0.00014827326,0.99162805,0.00031623966,0.0002100662,0.004772138],"study_design_scores_gemma":[0.000026898353,0.0006493015,0.009501585,0.000054635988,0.000065206696,0.0003152683,0.000104101964,0.0018243956,0.9832895,0.0003045114,0.003843281,0.000021452683],"about_ca_topic_score_codex":0.0016397295,"about_ca_topic_score_gemma":0.0023085384,"teacher_disagreement_score":0.0032684759,"about_ca_system_score_codex":0.00088216324,"about_ca_system_score_gemma":0.0008435199,"threshold_uncertainty_score":0.013270497},"labels":[],"label_agreement":null},{"id":"W2133262715","doi":"10.1128/jcm.00892-09","title":"Identification of Performance Problems in a Commercial Human Immunodeficiency Virus Type 1 Enzyme Immunoassay by Multiuser External Quality Control Monitoring and Real-Time Data Analysis","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Protein purification and stability","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saskatchewan Health; St. Paul's Hospital; Provincial Laboratory of Public Health; Dr. Georges-L.-Dumont University Hospital Centre; Public Health Agency of Canada","funders":"Abbott Diagnostics; Public Health Agency; Public Health Agency of Canada","keywords":"Christian ministry; Human immunodeficiency virus (HIV); Immunoassay; External quality assessment; Computer science; Medicine; Virology; Immunology; Pathology","score_opus":0.04789399914028599,"score_gpt":0.3958223223993967,"score_spread":0.3479283232591107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133262715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7039262,0.0035069673,0.2724284,0.00097477133,0.00048608732,0.0021130757,0.0008252533,0.0075843735,0.008154883],"genre_scores_gemma":[0.8633337,0.00051836186,0.12883322,0.001394586,0.00007852065,0.00059571746,0.0011832302,0.0004451167,0.0036174054],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9522693,0.0080746235,0.002567116,0.006307292,0.029235523,0.0015460481],"domain_scores_gemma":[0.97415787,0.007796094,0.0048463284,0.002796812,0.009721563,0.0006812807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02438635,0.0019152627,0.0007969729,0.0026913458,0.0009905325,0.002293289,0.0019810947,0.0014820922,0.0009192769],"category_scores_gemma":[0.028209135,0.00085173483,0.0006258493,0.0023910496,0.0021908414,0.0007716222,0.0012016207,0.0012541894,0.0006094188],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027713494,0.0012309306,0.2710119,0.0008194758,0.00047114285,0.0011699772,0.0046693836,0.002217036,0.55388266,0.0017091424,0.0061546415,0.15389235],"study_design_scores_gemma":[0.00013969229,0.0043454324,0.17076236,0.00022127343,0.00050402945,0.0029505822,0.0006682083,0.043857865,0.75243735,0.0005958132,0.023298463,0.00021898978],"about_ca_topic_score_codex":0.023209436,"about_ca_topic_score_gemma":0.027800437,"teacher_disagreement_score":0.02438635,"about_ca_system_score_codex":0.0039104302,"about_ca_system_score_gemma":0.0032542648,"threshold_uncertainty_score":0.1289689},"labels":[],"label_agreement":null},{"id":"W2133343551","doi":"10.1128/jcm.41.2.778-782.2003","title":"Specimen Processing and Concentration of <i>Chlamydia trachomatis</i> Added Can Influence False-Negative Rates in the LCx Assay but Not in the APTIMA Combo 2 Assay When Testing for Inhibitors","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Buddhist Tzu Chi Medical Foundation","keywords":"Chlamydia trachomatis; Nucleic Acid Amplification Tests; Biology; Chlamydiaceae; Chlamydia; Cutoff; Chlamydiales; Urine; Virology; Immunology; Physics; Endocrinology","score_opus":0.06752312420994132,"score_gpt":0.3752787969048067,"score_spread":0.30775567269486537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133343551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9787667,0.0033668948,0.0114945,0.00042244684,0.00042121785,0.00045784548,0.00044248937,0.0002847866,0.0043430827],"genre_scores_gemma":[0.9804258,0.0005200815,0.016700894,0.0005342923,0.000077894874,0.00017509457,0.00059095206,0.0001350552,0.00084001874],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9752084,0.013904472,0.0022679623,0.0019801261,0.005934764,0.0007042977],"domain_scores_gemma":[0.96745646,0.023207435,0.003221542,0.002640896,0.003035888,0.00043778325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.019402657,0.0011051191,0.0008743973,0.0007324744,0.0005368103,0.0013104434,0.00086472026,0.0011302393,0.0011624336],"category_scores_gemma":[0.04789292,0.0009910455,0.001094091,0.000531224,0.0013532296,0.00050144835,0.0004938645,0.0007630683,0.00077128696],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01337653,0.0007589737,0.5896945,0.0013619353,0.0010096533,0.00091318367,0.0018130507,0.0016432651,0.31417447,0.00031844908,0.0032946754,0.07164133],"study_design_scores_gemma":[0.00009724896,0.006180745,0.56943315,0.00021153675,0.000772986,0.0029667576,0.00026323737,0.004551966,0.41006553,0.00014215415,0.0052372403,0.0000775269],"about_ca_topic_score_codex":0.002563052,"about_ca_topic_score_gemma":0.0029315252,"teacher_disagreement_score":0.019402657,"about_ca_system_score_codex":0.00048515722,"about_ca_system_score_gemma":0.0004950881,"threshold_uncertainty_score":0.10261226},"labels":[],"label_agreement":null},{"id":"W2133384137","doi":"10.1128/jcm.42.11.5270-5276.2004","title":"Selective Discrimination of <i>Listeria monocytogenes</i> Epidemic Strains by a Mixed-Genome DNA Microarray Compared to Discrimination by Pulsed-Field Gel Electrophoresis, Ribotyping, and Multilocus Sequence Typing","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Biology; Ribotyping; Subtyping; Multilocus sequence typing; Pulsed-field gel electrophoresis; Genetics; Typing; Listeria monocytogenes; Serotype; DNA microarray; Microbiology; Genotype; Gene; Bacteria","score_opus":0.07069371926021326,"score_gpt":0.37613354581994357,"score_spread":0.30543982655973034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133384137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98381835,0.0003322767,0.014725634,0.000115430754,0.000013919245,0.00002055521,0.00028403342,0.000111189736,0.00057854416],"genre_scores_gemma":[0.9521928,0.00034362808,0.044570006,0.00020644786,0.000022744973,0.00015661138,0.0011242862,0.00004143505,0.0013420547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995276,0.00010316237,0.000022902757,0.00019571961,0.00007752337,0.00007316521],"domain_scores_gemma":[0.999673,0.00013572437,0.000058004243,0.000024137466,0.000051161915,0.000057983005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031467696,0.00036461162,0.00040673456,0.00035492968,0.00013739853,0.00041936839,0.00027773876,0.0003910148,0.00076121406],"category_scores_gemma":[0.00068073825,0.00030300056,0.00018436534,0.00025587418,0.00022166078,0.00032516386,0.00035368095,0.00039633218,0.00039252662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015812546,0.000015244681,0.0010510839,0.000018294404,0.0000030982767,0.000006699468,0.000015857888,0.00008148215,0.99690944,0.000028560404,0.000020000132,0.0016921383],"study_design_scores_gemma":[0.00004128523,0.0007126374,0.06231424,0.00001945766,0.00006465698,0.0004853273,0.00014488175,0.013862625,0.92043996,0.00022501615,0.0016511912,0.000038756523],"about_ca_topic_score_codex":0.00031615133,"about_ca_topic_score_gemma":0.00043727254,"teacher_disagreement_score":0.00076121406,"about_ca_system_score_codex":0.00021447364,"about_ca_system_score_gemma":0.00011613431,"threshold_uncertainty_score":0.0025464892},"labels":[],"label_agreement":null},{"id":"W2133408300","doi":"10.1128/jcm.41.1.209-212.2003","title":"Commercial Assay for Detection of <i>Giardia lamblia</i> and <i>Cryptosporidium parvum</i> Antigens in Human Fecal Specimens by Rapid Solid-Phase Qualitative Immunochromatography","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario","funders":"","keywords":"Cryptosporidium; Cryptosporidium parvum; Giardia lamblia; Giardia; Microbiology; Biology; Antigen; Feces; Virology; Immunology","score_opus":0.03794940772543133,"score_gpt":0.431972338895976,"score_spread":0.3940229311705447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133408300","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4669438,0.015035503,0.44705835,0.0009264241,0.0010345663,0.0060466095,0.007557508,0.013495457,0.04190181],"genre_scores_gemma":[0.5571622,0.0042157136,0.38279954,0.0009934976,0.00035326934,0.0048675835,0.025930675,0.0004368722,0.023240732],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971257,0.0005926805,0.00019104565,0.0006548998,0.001241868,0.0001937594],"domain_scores_gemma":[0.99864334,0.000376575,0.00020506524,0.00016219073,0.0004820732,0.00013078396],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014144644,0.0011243632,0.0005783364,0.0020133492,0.0003440987,0.00049411244,0.0013815489,0.0010292885,0.010370819],"category_scores_gemma":[0.0015339551,0.0005441341,0.00052191806,0.0011491823,0.00037027418,0.00040337694,0.0004591483,0.0006245117,0.0048357644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085533335,0.0005815135,0.014961017,0.000755599,0.00008062859,0.00019198375,0.00012873604,0.00017643785,0.9242123,0.00069668214,0.0074871103,0.04987265],"study_design_scores_gemma":[0.0009700479,0.0051935352,0.08613199,0.0005314717,0.00048063186,0.0060751564,0.00016807095,0.012544276,0.823403,0.0006467985,0.063744284,0.00011074349],"about_ca_topic_score_codex":0.0007805166,"about_ca_topic_score_gemma":0.0016276039,"teacher_disagreement_score":0.010370819,"about_ca_system_score_codex":0.0005219071,"about_ca_system_score_gemma":0.0004976364,"threshold_uncertainty_score":0.034693837},"labels":[],"label_agreement":null},{"id":"W2133410523","doi":"10.1128/jcm.39.7.2713-2716.2001","title":"Basis of the Superiority of Cefoperazone Amphotericin Teicoplanin for Isolating <i>Campylobacter upsaliensis</i> from Stools","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Teicoplanin; Cefoperazone; Microbiology; Campylobacter; Antibacterial agent; Biology; Antibiotics; Medicine; Vancomycin; Imipenem; Bacteria; Antibiotic resistance; Staphylococcus aureus","score_opus":0.06085529516209358,"score_gpt":0.317138763245205,"score_spread":0.2562834680831114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133410523","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950584,0.002188712,0.0012328252,0.00023339901,0.000021307138,0.000021421787,0.00020033556,0.0000285594,0.0010149748],"genre_scores_gemma":[0.99546635,0.00052363786,0.0032364458,0.00006356509,0.000016412705,0.000008741063,0.0003502407,0.000009228669,0.00032539316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989458,0.00035056373,0.00014361076,0.0001976025,0.00027616174,0.00008631174],"domain_scores_gemma":[0.9982622,0.00091951183,0.00024918676,0.00014489816,0.000270499,0.00015365105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064633915,0.0002731437,0.00027598708,0.00026258407,0.00012183639,0.00064629596,0.0002646453,0.00042858865,0.00080860156],"category_scores_gemma":[0.0022254253,0.00016495846,0.00012560695,0.00013644881,0.00034188383,0.00036486998,0.00025466894,0.00032843207,0.00019985372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006561154,0.000051423118,0.005678748,0.00015310336,0.000014338226,0.000063968124,0.000039249837,0.000061801686,0.9869621,0.00003959304,0.000043492284,0.006236087],"study_design_scores_gemma":[0.000040021354,0.0029430713,0.083501466,0.00005154481,0.00006611048,0.0022968953,0.00022542509,0.0016838223,0.90702754,0.00011916545,0.0020295747,0.000015451413],"about_ca_topic_score_codex":0.0009142086,"about_ca_topic_score_gemma":0.0011801567,"teacher_disagreement_score":0.0009142086,"about_ca_system_score_codex":0.0001580626,"about_ca_system_score_gemma":0.00017431316,"threshold_uncertainty_score":0.0034182072},"labels":[],"label_agreement":null},{"id":"W2133536047","doi":"10.1128/jcm.02437-07","title":"Characterization of <i>Clostridium difficile</i> Strains Isolated from Patients in Ontario, Canada, from 2004 to 2006","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Mount Sinai Hospital; Toronto Public Health; University of Guelph","funders":"","keywords":"Ribotyping; Clostridium difficile; Microbiology; Metronidazole; Outbreak; Clostridiaceae; Biology; Clostridium difficile toxin B; Enterotoxin; Pulsed-field gel electrophoresis; Diarrhea; Clostridium difficile toxin A; Pore-forming toxin; Toxin; Molecular epidemiology; Antibiotic resistance; Virology; Antibiotics; Medicine; Genotype; Microbial toxins; Gene; Internal medicine; Escherichia coli; Genetics","score_opus":0.03410459856414238,"score_gpt":0.29844416008508534,"score_spread":0.26433956152094296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133536047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99423367,0.0006699617,0.00013348044,0.0001391821,0.000014028997,0.0000893131,0.0029972186,0.000013796845,0.0017093662],"genre_scores_gemma":[0.99230427,0.00079620536,0.0006861828,0.00034443277,0.000019866173,0.00003348357,0.004266278,0.00001059897,0.0015387329],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991804,0.000029085233,0.00007251237,0.00015783063,0.00034224894,0.00021791927],"domain_scores_gemma":[0.99866045,0.000049516442,0.0002249741,0.000028002627,0.00076871715,0.00026833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024958258,0.00046480214,0.00045234003,0.0012678227,0.0020374097,0.000936633,0.0005878592,0.00036434302,0.0007110121],"category_scores_gemma":[0.0011150579,0.00028607543,0.0003914379,0.0023184756,0.0005779135,0.00017979556,0.00040852188,0.00039179294,0.00019648777],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027685272,0.000070737115,0.9779689,0.00012154452,0.00004097821,0.0008570807,0.0013102065,0.00014281728,0.00976081,0.000036934965,0.001429432,0.007983859],"study_design_scores_gemma":[0.000009575711,0.00012994166,0.995777,0.000027008415,0.000026737096,0.0003877311,0.0006993225,0.000120134006,0.0008024308,0.0000045468037,0.0020076954,0.000007833459],"about_ca_topic_score_codex":0.94804376,"about_ca_topic_score_gemma":0.9572534,"teacher_disagreement_score":0.051956236,"about_ca_system_score_codex":0.010929001,"about_ca_system_score_gemma":0.012364052,"threshold_uncertainty_score":0.104524374},"labels":[],"label_agreement":null},{"id":"W2133669933","doi":"10.1128/jcm.00545-13","title":"Reply to “Calibration Technologies for Correct Determination of Epstein-Barr Virus, Human Herpesvirus 6 (HHV-6), and HHV-8 Antiviral Drug Susceptibilities by Use of Real-Time-PCR-Based Assays”","year":2013,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Human herpesvirus 6; Virology; Virus; Antiviral drug; Human herpesvirus; Epstein–Barr virus; Herpesviridae; Drug; Real-time polymerase chain reaction; Biology; Viral disease; Genetics; Pharmacology; Gene","score_opus":0.0329340033109375,"score_gpt":0.3309832732825061,"score_spread":0.2980492699715686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133669933","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010730992,0.0011665662,0.0003209563,0.974825,0.020731974,0.000021365877,0.00007766142,0.000055172073,0.0017281951],"genre_scores_gemma":[0.009233552,0.0010511762,0.0009101285,0.9575594,0.02608062,0.000055360215,0.00005570185,0.000027072223,0.0050269864],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984389,0.00052981864,0.0002424676,0.00022624142,0.00036981044,0.0001928456],"domain_scores_gemma":[0.9967449,0.001615442,0.0003118886,0.00009675838,0.0009399458,0.0002910109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016337514,0.0008942479,0.0007898065,0.00067996053,0.0016090093,0.0015576829,0.0011453681,0.025239035,0.004509407],"category_scores_gemma":[0.01558778,0.0004911211,0.0007835739,0.00054316985,0.0017076066,0.002336276,0.00074991013,0.017490618,0.0052153957],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011134356,0.000062035295,0.0015779412,0.00008467705,0.000019099423,0.008024948,0.0002533968,0.000097298944,0.00058303756,0.0016735176,0.97729546,0.01021729],"study_design_scores_gemma":[0.00013068375,0.00019357934,0.0028309661,0.00037228694,0.00005460297,0.024554625,0.0009505569,0.0010923875,0.0011447999,0.00673141,0.96182436,0.00011983447],"about_ca_topic_score_codex":0.0018542117,"about_ca_topic_score_gemma":0.002606556,"teacher_disagreement_score":0.025239035,"about_ca_system_score_codex":0.0019152573,"about_ca_system_score_gemma":0.0014360463,"threshold_uncertainty_score":0.015085518},"labels":[],"label_agreement":null},{"id":"W2133701259","doi":"10.1128/jcm.41.7.3344-3347.2003","title":"Strain Variation among <i>Bordetella pertussis</i> Isolates from Quebec and Alberta Provinces of Canada from 1985 to 1994","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Institut National de Santé Publique du Québec; Ste. Anne's Hospital; Montreal Children's Hospital; University of Alberta","funders":"","keywords":"Bordetella pertussis; Typing; Pulsed-field gel electrophoresis; Strain (injury); Microbiology; Virology; Biology; Whooping cough; Gene; Genetics; Bacteria; Vaccination; Genotype","score_opus":0.011363389011430858,"score_gpt":0.2593262021309621,"score_spread":0.24796281311953122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133701259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99279976,0.00093289535,0.00024342703,0.00015987201,0.000016228692,0.000024491907,0.0030688345,0.000019842551,0.002734667],"genre_scores_gemma":[0.9967452,0.00024846144,0.00028114123,0.000078955265,0.0000034466611,0.0000057568327,0.0014653482,0.0000051277875,0.0011666156],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993963,0.000040514373,0.000027194668,0.000099698955,0.00019547754,0.00024074275],"domain_scores_gemma":[0.9987399,0.00006163241,0.00014313437,0.000023293376,0.00082759786,0.0002044775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044998666,0.00033511876,0.00025919185,0.0014702107,0.0015867543,0.00096229644,0.0007405148,0.0003060557,0.00094960793],"category_scores_gemma":[0.00092920166,0.00019335379,0.00024027238,0.0021549484,0.00055155315,0.00016718962,0.0002266361,0.00035949578,0.00017861601],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003618663,0.000040741084,0.9723803,0.00005000679,0.00009109211,0.0002787581,0.0010758849,0.0008043882,0.006859341,0.00019264292,0.0022236106,0.015641341],"study_design_scores_gemma":[0.0000043530786,0.000021411775,0.9975447,0.00001219955,0.000018875111,0.000079717065,0.00042541669,0.00024633043,0.00045461874,0.0000075488315,0.001178742,0.000006154934],"about_ca_topic_score_codex":0.9948403,"about_ca_topic_score_gemma":0.996347,"teacher_disagreement_score":0.021917617,"about_ca_system_score_codex":0.021917617,"about_ca_system_score_gemma":0.011916863,"threshold_uncertainty_score":0.15902418},"labels":[],"label_agreement":null},{"id":"W2133928275","doi":"10.1128/jcm.43.11.5520-5525.2005","title":"Epidemiological Survey of Human Metapneumovirus Infection in a Large Pediatric Tertiary Care Center","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Institut National de Santé Publique du Québec","funders":"","keywords":"Human metapneumovirus; Metapneumovirus; Medicine; Epidemiology; Incidence (geometry); Respiratory tract infections; Pediatrics; Lower respiratory tract infection; Respiratory tract; Respiratory system; Pneumovirinae; Virus; Virology; Internal medicine; Viral disease; Paramyxoviridae","score_opus":0.15356385815289325,"score_gpt":0.4956092419631169,"score_spread":0.34204538381022365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133928275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992525,0.000111785936,0.000069955655,0.00006936406,0.0000022332115,0.000022071823,0.00021924311,0.000009137351,0.00024354618],"genre_scores_gemma":[0.99911386,0.00015977367,0.00018293089,0.00009663731,0.000014578716,0.000022716808,0.0003305111,0.0000033184895,0.00007573281],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991892,0.00019644722,0.000055144526,0.00015908887,0.00021982504,0.0001802505],"domain_scores_gemma":[0.9984267,0.00020293638,0.00042080224,0.00007018888,0.00028164798,0.00059771514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063420704,0.0003577762,0.00039413315,0.0012256865,0.000962462,0.00064305775,0.00054314965,0.0004552352,0.0014474199],"category_scores_gemma":[0.0016483276,0.00037452113,0.00017952043,0.0013922898,0.00057443866,0.000521304,0.0006518081,0.0006042315,0.0002534735],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020512354,0.000031419644,0.9979936,0.000007744615,0.000008538321,0.00027351474,0.00025029015,0.000018779945,0.00038607404,0.000008447438,0.00018570121,0.0008154657],"study_design_scores_gemma":[0.000007140373,0.00014814349,0.997755,0.000006895652,0.0000066190178,0.00085496495,0.0007785595,0.000105140476,0.00009113453,0.0000039878455,0.00023900747,0.000003487558],"about_ca_topic_score_codex":0.037488166,"about_ca_topic_score_gemma":0.03880293,"teacher_disagreement_score":0.037488166,"about_ca_system_score_codex":0.0017859157,"about_ca_system_score_gemma":0.0020502293,"threshold_uncertainty_score":0.0745399},"labels":[],"label_agreement":null},{"id":"W2133934438","doi":"10.1128/jcm.39.6.2367-2368.2001","title":"Improved Primer Design for Multiplex PCR Analysis of Vancomycin-Resistant <b>spp</b>","year":2001,"lang":"es","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services","funders":"","keywords":"Primer (cosmetics); Multiplex polymerase chain reaction; Biology; Multiplex; Polymerase chain reaction; 16S ribosomal RNA; Molecular biology; Microbiology; Gene sequence; Ribosomal RNA; Gene; Virology; Genetics; Chemistry","score_opus":0.082182606263964,"score_gpt":0.3897921223004279,"score_spread":0.3076095160364639,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133934438","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07090288,0.006122624,0.9087803,0.0015076224,0.0026731659,0.0019255973,0.0012332288,0.0023987312,0.0044559496],"genre_scores_gemma":[0.044265267,0.0011892328,0.9484621,0.0009460201,0.00025947925,0.0012970845,0.0012171718,0.00014941393,0.0022141202],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99560106,0.0017452148,0.00062265,0.0008637602,0.0008109074,0.00035643775],"domain_scores_gemma":[0.9964089,0.0015110223,0.00038043252,0.00038299072,0.0011666203,0.00014993157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032700545,0.0018251324,0.0018969076,0.0019561267,0.0004397704,0.0009903914,0.0014264121,0.0020465,0.0042706854],"category_scores_gemma":[0.006276677,0.0013791735,0.0009331582,0.0010368313,0.00045433672,0.0009733309,0.0006752978,0.0037156506,0.0043067164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070659217,0.00037201672,0.0010834665,0.0006166283,0.000054316624,0.00063873676,0.00018103901,0.00088359695,0.9151735,0.0016388136,0.003326291,0.07532499],"study_design_scores_gemma":[0.00039848962,0.0020579658,0.0043503777,0.00032530076,0.00029265272,0.005747301,0.00014718465,0.033983115,0.860213,0.002738722,0.08955417,0.00019164156],"about_ca_topic_score_codex":0.00032944558,"about_ca_topic_score_gemma":0.0009993631,"teacher_disagreement_score":0.0042706854,"about_ca_system_score_codex":0.0005879598,"about_ca_system_score_gemma":0.000580838,"threshold_uncertainty_score":0.01729393},"labels":[],"label_agreement":null},{"id":"W2134074932","doi":"10.1128/jcm.38.7.2480-2483.2000","title":"Pooling Cervical Swabs and Testing by Ligase Chain Reaction Are Accurate and Cost-Saving Strategies for Diagnosis of <i>Chlamydia trachomatis</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University; St. Joseph's Hospital","funders":"","keywords":"Ligase chain reaction; Chlamydia trachomatis; Pooling; Nucleic Acid Amplification Tests; False positive paradox; Multiplex; Population; Polymerase chain reaction; Biology; Medicine; Virology; Bioinformatics; Multiplex polymerase chain reaction; Computer science; Genetics; Environmental health","score_opus":0.06990176838106088,"score_gpt":0.38069605283564595,"score_spread":0.31079428445458507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134074932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7738656,0.007279798,0.20966278,0.0008948605,0.0002073058,0.0018733118,0.0012612758,0.0018434669,0.0031116102],"genre_scores_gemma":[0.7372245,0.002274761,0.25377226,0.000561153,0.00019250429,0.0010310987,0.0020093315,0.00019074135,0.0027436633],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99329376,0.002375478,0.0007789193,0.0014559182,0.0015226753,0.00057329825],"domain_scores_gemma":[0.993913,0.0023196756,0.0014805389,0.0015142467,0.0005520382,0.00022051108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006538624,0.0018663352,0.0019830132,0.0016798555,0.0007326412,0.0016576675,0.0015700647,0.0011930197,0.0019538752],"category_scores_gemma":[0.008156743,0.0010218833,0.0012806363,0.0013965219,0.0011299385,0.0013663254,0.0011624481,0.00070652715,0.0018421542],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014974276,0.00052869343,0.069151714,0.0010619253,0.00058748975,0.00044766554,0.00073917984,0.0016452706,0.7288786,0.0005883903,0.0013120945,0.19356152],"study_design_scores_gemma":[0.00008911204,0.0038773678,0.073195115,0.00009253143,0.000728391,0.0030363728,0.0004339395,0.0055582062,0.900957,0.0016750861,0.010117252,0.0002395756],"about_ca_topic_score_codex":0.0012860665,"about_ca_topic_score_gemma":0.0024503353,"teacher_disagreement_score":0.006538624,"about_ca_system_score_codex":0.00056710077,"about_ca_system_score_gemma":0.00062388816,"threshold_uncertainty_score":0.034579992},"labels":[],"label_agreement":null},{"id":"W2134177893","doi":"10.1128/jcm.44.3.1081-1083.2006","title":"Insertion Sequence IS <i>900</i> Revisited","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research","keywords":"Paratuberculosis; Biology; Mycobacterium; Mycobacterium avium subsp. paratuberculosis; Microbiology; Sequence analysis; Virology; Genetics; Bacteria; Gene","score_opus":0.08430670000803811,"score_gpt":0.4285426712110602,"score_spread":0.3442359712030221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134177893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.745138,0.010656651,0.05789064,0.013671627,0.014707874,0.0011456684,0.017756596,0.0039613396,0.13507162],"genre_scores_gemma":[0.9234324,0.0022451133,0.029123599,0.007802852,0.0017019452,0.00020499063,0.014557648,0.00064672396,0.020284748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949455,0.00012310075,0.000076645,0.00011326295,0.00012685827,0.000065513006],"domain_scores_gemma":[0.998892,0.00021165263,0.00021269692,0.00016453525,0.00026927597,0.00024996896],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004527114,0.000583712,0.00056753145,0.00058925344,0.0006930957,0.0010576108,0.00067712006,0.0018173549,0.009770871],"category_scores_gemma":[0.0012705873,0.0001732905,0.0007288491,0.000711225,0.00059601205,0.00040799275,0.0003507944,0.0023132677,0.0077064405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025913361,0.00049064675,0.013742692,0.0008669775,0.00029423294,0.013520085,0.00051136676,0.00045336003,0.842409,0.010916875,0.017638776,0.09656458],"study_design_scores_gemma":[0.00075451855,0.0027293605,0.08332167,0.0009707937,0.0010296904,0.055596024,0.0011553467,0.0031339566,0.31706783,0.00794662,0.5260073,0.00028692314],"about_ca_topic_score_codex":0.002031341,"about_ca_topic_score_gemma":0.0020919314,"teacher_disagreement_score":0.009770871,"about_ca_system_score_codex":0.0006257011,"about_ca_system_score_gemma":0.0008423112,"threshold_uncertainty_score":0.03268683},"labels":[],"label_agreement":null},{"id":"W2134275207","doi":"10.1128/jcm.40.4.1436-1440.2002","title":"Rapid Detection of Shiga Toxin-Producing Bacteria in Feces by Multiplex PCR with Molecular Beacons on the Smart Cycler","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"Centers for Disease Control and Prevention","keywords":"Biology; Shiga toxin; Microbiology; Multiplex polymerase chain reaction; Escherichia coli; Multiplex; Amplicon; Polymerase chain reaction; Feces; Primer (cosmetics); Bacteria; Molecular biology; Virology; Gene; Chemistry; Genetics","score_opus":0.03992082738603184,"score_gpt":0.3143008033922403,"score_spread":0.27437997600620845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134275207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53358626,0.004950982,0.45433432,0.00025906347,0.00015514676,0.0009459177,0.0016631973,0.0024534091,0.0016516965],"genre_scores_gemma":[0.28323305,0.0015751763,0.7093999,0.00019786089,0.00006122317,0.0011990316,0.0019227302,0.00010243901,0.0023086409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973711,0.00073753844,0.00023818319,0.0006575439,0.00076773675,0.00022793216],"domain_scores_gemma":[0.9989324,0.00041819405,0.00025278493,0.000104953506,0.00020113777,0.000090463924],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003168838,0.0010624152,0.0013093456,0.0013504904,0.0001858295,0.0006939436,0.00075536815,0.00061459054,0.00071736635],"category_scores_gemma":[0.0020859127,0.00081914995,0.00061134464,0.0007282287,0.00043093957,0.00057106116,0.0006084409,0.00089187466,0.00078030315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036260468,0.00009162138,0.0033056093,0.00021758303,0.000036194633,0.00007552103,0.00009747438,0.0008734723,0.9619539,0.00016092356,0.00025176315,0.032573264],"study_design_scores_gemma":[0.00015727997,0.0016982001,0.009958395,0.0000740785,0.000107823274,0.00095925987,0.000059752507,0.03639177,0.9444295,0.00035532293,0.005724526,0.000084067404],"about_ca_topic_score_codex":0.00024735805,"about_ca_topic_score_gemma":0.00043264034,"teacher_disagreement_score":0.003168838,"about_ca_system_score_codex":0.00023399967,"about_ca_system_score_gemma":0.00031953823,"threshold_uncertainty_score":0.01675862},"labels":[],"label_agreement":null},{"id":"W2134755460","doi":"10.1128/jcm.41.3.1010-1015.2003","title":"Conventional Methods versus 16S Ribosomal DNA Sequencing for Identification of Nontuberculous Mycobacteria: Cost Analysis","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; Health Canada; University of Manitoba","funders":"","keywords":"Biology; Nontuberculous mycobacteria; Ribosomal DNA; 16S ribosomal RNA; Clinical microbiology; DNA sequencing; Identification (biology); Ribosomal RNA; Computational biology; Polymerase chain reaction; Microbiology; DNA; Genetics; Mycobacterium; Bacteria; Gene; Phylogenetics; Ecology","score_opus":0.13274887387696346,"score_gpt":0.4911398330547216,"score_spread":0.3583909591777581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134755460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9630579,0.008860076,0.019454155,0.0009518569,0.00010976647,0.00047825775,0.00090823823,0.000029599536,0.0061502727],"genre_scores_gemma":[0.9527103,0.003335714,0.039437722,0.00045334632,0.00015950206,0.0004256738,0.0011033517,0.00005988427,0.0023145447],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99086297,0.0032976184,0.0004410961,0.00065618946,0.004205783,0.0005364662],"domain_scores_gemma":[0.98387384,0.008558524,0.002651646,0.0005126933,0.0040188124,0.00038448808],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007326488,0.0009611859,0.0006737415,0.003152115,0.00029269088,0.0018534228,0.0011620423,0.00091021607,0.0020095876],"category_scores_gemma":[0.017193032,0.00027750342,0.000911907,0.0030526374,0.000550837,0.0019414093,0.0011035401,0.00044146014,0.0004683794],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013892458,0.0017754022,0.44245747,0.002196017,0.00095593743,0.0009889703,0.0006562251,0.015431598,0.06163484,0.0085382955,0.0035996835,0.44787303],"study_design_scores_gemma":[0.00029189844,0.008787626,0.829369,0.000560704,0.0011289903,0.0015488482,0.0021821118,0.0931101,0.039674174,0.0052293725,0.017849829,0.00026734313],"about_ca_topic_score_codex":0.0026309832,"about_ca_topic_score_gemma":0.004615939,"teacher_disagreement_score":0.007326488,"about_ca_system_score_codex":0.0028633277,"about_ca_system_score_gemma":0.0007907712,"threshold_uncertainty_score":0.038746595},"labels":[],"label_agreement":null},{"id":"W2134904443","doi":"10.1128/jcm.39.5.1840-1844.2001","title":"Simple Method for Determining Biovar and Serovar Types of <i>Ureaplasma urealyticum</i> Clinical Isolates Using PCR–Single-Strand Conformation Polymorphism Analysis","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Ureaplasma urealyticum; Serotype; Biology; Biovar; Mycoplasmataceae; Microbiology; Polymerase chain reaction; Mollicutes; Typing; Gene; Virology; Genetics; Mycoplasma","score_opus":0.12679375989477398,"score_gpt":0.4563256118215923,"score_spread":0.32953185192681833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134904443","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.28830862,0.006155399,0.6824934,0.0012150217,0.0013686533,0.0039041284,0.003432584,0.0028719588,0.010250281],"genre_scores_gemma":[0.22804755,0.0031720798,0.7541428,0.00045113414,0.00025170835,0.0020809793,0.0048002694,0.0001734572,0.006880067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978613,0.00051872357,0.00026799768,0.00034941555,0.00090382743,0.0000986739],"domain_scores_gemma":[0.998331,0.0006268473,0.00030527601,0.00020747556,0.00035692833,0.0001725425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011764818,0.0010371004,0.0007182471,0.0023844275,0.0003642581,0.00044016715,0.0007794381,0.0009949768,0.0027502822],"category_scores_gemma":[0.00214593,0.000566344,0.00047242802,0.0005550028,0.00048323534,0.00039897417,0.0006454708,0.0013052075,0.0019348623],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021216803,0.00039036528,0.011365908,0.00035437787,0.00006729661,0.000298737,0.00021793124,0.00012924541,0.92259437,0.00037131432,0.0015886734,0.062409617],"study_design_scores_gemma":[0.0002408378,0.0040955064,0.10007729,0.00031768257,0.00050838396,0.01141411,0.00046726313,0.0058711707,0.8364137,0.0012357354,0.039093908,0.00026444806],"about_ca_topic_score_codex":0.00049183203,"about_ca_topic_score_gemma":0.0016898763,"teacher_disagreement_score":0.0027502822,"about_ca_system_score_codex":0.000156445,"about_ca_system_score_gemma":0.00038772332,"threshold_uncertainty_score":0.009200573},"labels":[],"label_agreement":null},{"id":"W2134990479","doi":"10.1128/jcm.38.11.4108-4113.2000","title":"PCR Detection of <i>Escherichia coli</i> O157:H7 Directly from Stools: Evaluation of Commercial Extraction Methods for Purifying Fecal DNA","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Escherichia coli; DNA extraction; Feces; Biology; DNA; Microbiology; Polymerase chain reaction; Bacteria; Enterobacteriaceae; Genetics; Gene","score_opus":0.1077680626978318,"score_gpt":0.4787575015024855,"score_spread":0.37098943880465374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134990479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92426306,0.0038938646,0.069198765,0.00020030081,0.00010482924,0.000760786,0.0005258189,0.00022154792,0.00083112373],"genre_scores_gemma":[0.7281122,0.00524095,0.2610725,0.00027943306,0.000112065034,0.000925726,0.0027204072,0.00015343733,0.0013832018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995376,0.002068504,0.00064188533,0.0006512702,0.0010103291,0.00025187703],"domain_scores_gemma":[0.9913981,0.005009102,0.0012995248,0.00047370687,0.0016178101,0.000201671],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0048229606,0.0012442014,0.00081710593,0.0011289244,0.00026201166,0.0006301041,0.0011126916,0.0010051826,0.0008808467],"category_scores_gemma":[0.008857371,0.000558183,0.00045959323,0.0008209872,0.0006912121,0.0006402495,0.0004894931,0.0004671138,0.0005669222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006529263,0.0005173176,0.019368347,0.00094500347,0.000066819615,0.00016653724,0.00023734386,0.00027205795,0.9581059,0.00006316564,0.00013247746,0.01947209],"study_design_scores_gemma":[0.00012815074,0.0040868274,0.021920076,0.000080655496,0.00024122768,0.0012921001,0.00023683779,0.0015704024,0.9688506,0.00006129502,0.0014910877,0.000040566574],"about_ca_topic_score_codex":0.0006900751,"about_ca_topic_score_gemma":0.0017509044,"teacher_disagreement_score":0.0048229606,"about_ca_system_score_codex":0.00032085727,"about_ca_system_score_gemma":0.0004032193,"threshold_uncertainty_score":0.025506556},"labels":[],"label_agreement":null},{"id":"W2135029894","doi":"10.1128/jcm.40.12.4457-4465.2002","title":"Microevolution of the Direct Repeat Region of <i>Mycobacterium tuberculosis</i> : Implications for Interpretation of Spoligotyping Data","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Research Foundation","keywords":"Microevolution; Mycobacterium tuberculosis; Biology; Interpretation (philosophy); Tuberculosis; Genetics; Virology; Microbiology; Evolutionary biology; Medicine; Linguistics; Philosophy; Pathology","score_opus":0.13021795200605815,"score_gpt":0.4168437650430401,"score_spread":0.286625813036982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135029894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98190767,0.0010350927,0.015533478,0.00016828674,0.000020049247,0.000033156277,0.00023834029,0.000075109754,0.0009888053],"genre_scores_gemma":[0.98921037,0.00033999965,0.010068187,0.00011205991,0.000016049202,0.000013540158,0.00014647211,0.00002158079,0.0000717687],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9985147,0.000848675,0.00014648573,0.00020973611,0.00019920977,0.00008106508],"domain_scores_gemma":[0.996411,0.002073598,0.00084135815,0.0003485675,0.00021555627,0.000109879395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002553153,0.00034148904,0.00043824024,0.00079052144,0.00022968161,0.0007792751,0.00044023324,0.00048394268,0.00026241614],"category_scores_gemma":[0.0052505364,0.00020264176,0.00024678846,0.0007001911,0.00050140795,0.00041585855,0.00034529335,0.0005256758,0.00018232071],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000699472,0.000079687,0.3874839,0.00028608952,0.00009182333,0.0013591103,0.0010394527,0.002156429,0.5554764,0.0005701796,0.00016299801,0.050594356],"study_design_scores_gemma":[0.000024137524,0.00047459398,0.78289616,0.00017133336,0.00015965595,0.0064568794,0.0010397834,0.014598643,0.18851182,0.0023918275,0.003210726,0.00006454474],"about_ca_topic_score_codex":0.00049069925,"about_ca_topic_score_gemma":0.0005063564,"teacher_disagreement_score":0.002553153,"about_ca_system_score_codex":0.00027362382,"about_ca_system_score_gemma":0.00015336178,"threshold_uncertainty_score":0.013502538},"labels":[],"label_agreement":null},{"id":"W2135030517","doi":"10.1128/jcm.39.6.2272-2279.2001","title":"Antibody Response to Shiga Toxins Stx2 and Stx1 in Children with Enteropathic Hemolytic-Uremic Syndrome","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Shiga toxin; Microbiology; Serotype; Serology; Antibody; Biology; Toxoid; STX2; Antigen; Virology; Immunology; Shiga-like toxin; Population; Escherichia coli; Immunization; Medicine","score_opus":0.01891959172895451,"score_gpt":0.3648027550421036,"score_spread":0.34588316331314906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135030517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996468,0.00011800921,0.000038962135,0.00001835162,0.0000032390553,0.0000027002943,0.000030773914,0.000004682455,0.00013661828],"genre_scores_gemma":[0.99972695,0.00008106549,0.000054290635,0.000023086242,0.0000061360824,0.0000040625464,0.000052935775,0.0000011762596,0.000050257673],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99960524,0.000084097104,0.000049757607,0.00008258315,0.00009002706,0.00008827711],"domain_scores_gemma":[0.9992291,0.00022409398,0.00024103692,0.000023608589,0.000084170635,0.00019790752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034856657,0.0006245527,0.0005255896,0.0013270141,0.00040583254,0.000429847,0.00018550147,0.00057757134,0.001023902],"category_scores_gemma":[0.0018425093,0.00047349514,0.00029271154,0.0006540047,0.0006046045,0.0004016535,0.00029451287,0.0005018562,0.00022068378],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012473667,0.000052499705,0.99437296,0.00001893211,0.00001769127,0.0011391096,0.0002313126,0.00004212801,0.0027651342,0.000011829269,0.000084321735,0.0011394753],"study_design_scores_gemma":[0.000014201218,0.00037982888,0.9939388,0.000007602756,0.000022568582,0.0045056874,0.00021382395,0.00015441931,0.0006361692,0.000010995976,0.00011117516,0.000004809342],"about_ca_topic_score_codex":0.003989189,"about_ca_topic_score_gemma":0.0024869472,"teacher_disagreement_score":0.003989189,"about_ca_system_score_codex":0.00044524562,"about_ca_system_score_gemma":0.00024054767,"threshold_uncertainty_score":0.007931948},"labels":[],"label_agreement":null},{"id":"W2135197149","doi":"10.1128/jcm.40.5.1773-1782.2002","title":"Shiga Toxin-Producing <i>Escherichia coli</i> Infection and Antibodies against Stx2 and Stx1 in Household Contacts of Children with Enteropathic Hemolytic-Uremic Syndrome","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"STX2; Antibody; Microbiology; Shiga toxin; Escherichia coli; Biology; Feces; Immunoglobulin G; Shiga-like toxin; Immunoglobulin M; Asymptomatic; Immunology; Virology; Medicine; Internal medicine; Gene","score_opus":0.030114551676809476,"score_gpt":0.2949322985593113,"score_spread":0.2648177468825018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135197149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997491,0.000088441506,0.000015661344,0.00001292631,0.0000018049208,0.0000025787072,0.000035648063,0.0000016105465,0.00009213413],"genre_scores_gemma":[0.9997967,0.00006047636,0.000022642544,0.00001762364,0.0000060405428,0.0000031568472,0.00005627455,8.2349396e-7,0.000036279842],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994836,0.00013288975,0.00006118162,0.000088044835,0.000090066336,0.00014420478],"domain_scores_gemma":[0.9987375,0.0002577098,0.0005292365,0.00004383254,0.000089243906,0.00034245464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032087593,0.00048584843,0.00053618336,0.0009782484,0.00092056097,0.00060212973,0.00025326718,0.0007113073,0.0012755819],"category_scores_gemma":[0.0018325077,0.0005966981,0.00037426755,0.00072476704,0.0005372602,0.0005906364,0.00046042944,0.00059585215,0.00022817685],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008905625,0.000045129014,0.9981651,0.000006622451,0.000018922061,0.0006762881,0.00023556242,0.000018601486,0.00028469964,0.000003932412,0.00004277491,0.00041343342],"study_design_scores_gemma":[0.000009254106,0.00022135126,0.9964144,0.00000662699,0.000019688881,0.0025499773,0.0005282062,0.00007818581,0.00008821168,0.0000065537506,0.000073118754,0.0000043128734],"about_ca_topic_score_codex":0.009106091,"about_ca_topic_score_gemma":0.009111476,"teacher_disagreement_score":0.009106091,"about_ca_system_score_codex":0.00045655872,"about_ca_system_score_gemma":0.0002546563,"threshold_uncertainty_score":0.018106222},"labels":[],"label_agreement":null},{"id":"W2135378052","doi":"10.1128/jcm.01946-14","title":"Evaluating the Auto-MODS Assay, a Novel Tool for Tuberculosis Diagnosis for Use in Resource-Limited Settings","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Sputum; Tuberculosis; Gold standard (test); Chiang mai; Internal medicine; Confidence interval; Biosafety; Intensive care medicine; Pathology","score_opus":0.19790966435825738,"score_gpt":0.4881773396568568,"score_spread":0.2902676752985994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135378052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849215,0.0031733476,0.006960633,0.0002450035,0.00006212135,0.00031398828,0.0009013412,0.00014934731,0.0032727004],"genre_scores_gemma":[0.98497146,0.000618841,0.013150339,0.00013604289,0.00002732911,0.000081578684,0.00035460724,0.000010608785,0.000649145],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99698275,0.0013504188,0.00019053249,0.0003762392,0.0010137288,0.00008622761],"domain_scores_gemma":[0.9974395,0.000835503,0.00076285156,0.00016789617,0.00065379834,0.00014035516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028009869,0.00048793922,0.00043903172,0.0010879216,0.00021531762,0.0010284024,0.00045048815,0.00049923564,0.0007902861],"category_scores_gemma":[0.003797985,0.00023375862,0.00037342968,0.0006378328,0.0004344178,0.0004814606,0.00053922925,0.0003143987,0.00029384563],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017737477,0.00033509807,0.79521775,0.0005793207,0.0002099776,0.00029563392,0.00028405577,0.0019034508,0.09059621,0.00026036685,0.00097081356,0.10757362],"study_design_scores_gemma":[0.00022369808,0.009063134,0.82274795,0.00023140201,0.00043706034,0.0045813452,0.0006267743,0.044125553,0.10703054,0.00046274293,0.010353219,0.000116612195],"about_ca_topic_score_codex":0.0019924566,"about_ca_topic_score_gemma":0.0034914368,"teacher_disagreement_score":0.0028009869,"about_ca_system_score_codex":0.00046188955,"about_ca_system_score_gemma":0.0009274901,"threshold_uncertainty_score":0.014813185},"labels":[],"label_agreement":null},{"id":"W2135951387","doi":"10.1128/jcm.00203-11","title":"Comparative Evaluation of a Chromogenic Agar Medium, the Modified Hodge Test, and a Battery of Meropenem-Inhibitor Discs for Detection of Carbapenemase Activity in Enterobacteriaceae","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Meropenem; Chromogenic; Microbiology; Enterobacteriaceae; Agar; Agar plate; Enterobacteriaceae Infections; Medicine; Biology; Chemistry; Chromatography; Antibiotics; Bacteria; Escherichia coli; Antibiotic resistance; Biochemistry","score_opus":0.09393673307793574,"score_gpt":0.3669526815827876,"score_spread":0.2730159485048519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135951387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860552,0.003287328,0.008545759,0.00009927543,0.000106452964,0.00015633299,0.0003666636,0.00009134716,0.0012916138],"genre_scores_gemma":[0.95402443,0.0038549043,0.038246553,0.00008517478,0.00011612019,0.00023303341,0.0014763786,0.0000554022,0.0019080576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99565387,0.0018286739,0.00052636536,0.00049152615,0.0012726373,0.00022688293],"domain_scores_gemma":[0.99445796,0.0022205885,0.00065667334,0.00051655667,0.0015824098,0.0005658773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003175305,0.0013871592,0.00088578335,0.0021629105,0.00046762815,0.00079975044,0.00091247674,0.0010012597,0.0006046889],"category_scores_gemma":[0.00412203,0.0005959952,0.00074667303,0.0016327532,0.0007599526,0.0007389153,0.0009883605,0.0005909117,0.00025482633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026635856,0.0010486991,0.008256669,0.0005791215,0.00021637208,0.00019329363,0.00041381537,0.0004300535,0.9704513,0.0001292824,0.00010770411,0.015510219],"study_design_scores_gemma":[0.00013309559,0.018697215,0.051162258,0.000065102664,0.0004935083,0.001779914,0.00028651868,0.0019482238,0.92345846,0.00010708605,0.0017660036,0.000102573846],"about_ca_topic_score_codex":0.0012266944,"about_ca_topic_score_gemma":0.002293839,"teacher_disagreement_score":0.003175305,"about_ca_system_score_codex":0.0002986265,"about_ca_system_score_gemma":0.000538059,"threshold_uncertainty_score":0.016792834},"labels":[],"label_agreement":null},{"id":"W2136228058","doi":"10.1128/jcm.00796-12","title":"The Genus Corynebacterium and Other Medically Relevant Coryneform-Like Bacteria","year":2012,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":418,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Corynebacterium; Biology; Microbiology; Bacteria; Taxon; Bacilli; Antibiotics; Genetics; Ecology","score_opus":0.057184816458030995,"score_gpt":0.36728599297879755,"score_spread":0.3101011765207666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136228058","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00016649073,0.9979329,0.00019492714,0.00020187731,0.00028525083,0.0000057981274,0.000022105134,0.000014815202,0.0011757445],"genre_scores_gemma":[0.0008603433,0.9971976,0.0005080527,0.0001575299,0.00017060988,0.000008520875,0.00006434481,0.0000028921588,0.0010301119],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9997342,0.000030834864,0.000033678672,0.000053330637,0.0001248212,0.000023042636],"domain_scores_gemma":[0.99957997,0.00013733438,0.00008633408,0.000015844907,0.00012768041,0.00005267571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041981056,0.0012315038,0.0015114113,0.003136411,0.00036795365,0.001051366,0.0008731488,0.0010259316,0.0033262167],"category_scores_gemma":[0.00070659246,0.00031606696,0.0003316904,0.0030259427,0.0005871452,0.0015095011,0.0006584539,0.0014122388,0.0045921607],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004137384,0.000050002323,0.00032799755,0.0143685285,0.000037998576,0.00032448818,0.00007879752,0.00014249473,0.004146716,0.001556734,0.024228979,0.9546959],"study_design_scores_gemma":[0.000004617469,0.000048765425,0.0010566933,0.0018651816,0.00004778894,0.0021598807,0.000083692816,0.00003565677,0.0009080876,0.000950069,0.9928236,0.000016034224],"about_ca_topic_score_codex":0.0010341918,"about_ca_topic_score_gemma":0.0015501627,"teacher_disagreement_score":0.0033262167,"about_ca_system_score_codex":0.00056310964,"about_ca_system_score_gemma":0.001505324,"threshold_uncertainty_score":0.011127293},"labels":[],"label_agreement":null},{"id":"W2136232438","doi":"10.1128/jcm.44.4.1382-1389.2006","title":"Genotyping of <i>Toxoplasma gondii</i> by Multiplex PCR and Peptide-Based Serological Testing of Samples from Infants in Poland Diagnosed with Congenital Toxoplasmosis","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Toxoplasma gondii Research Studies","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Toxoplasmosis; Genotyping; Serology; Toxoplasma gondii; Virology; Multiplex; Biology; Multiplex polymerase chain reaction; Polymerase chain reaction; Immunology; Genotype; Antibody; Genetics; Gene","score_opus":0.041731050798941974,"score_gpt":0.30088348610332516,"score_spread":0.2591524353043832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136232438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99963534,0.000060066974,0.00017159728,0.0000045363095,0.0000010256446,0.000005840935,0.000038777755,0.0000027662393,0.00008013357],"genre_scores_gemma":[0.9990012,0.00009523002,0.0007275498,0.000009621469,0.0000017886972,0.0000096983185,0.00010955129,0.0000017747318,0.0000435627],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995925,0.00006331426,0.00009478582,0.00008627961,0.00010086934,0.0000624069],"domain_scores_gemma":[0.99958545,0.00008503182,0.00018703975,0.000017795954,0.0000709535,0.00005380266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027633383,0.00032847622,0.0002752492,0.00056254497,0.00017466504,0.0003389082,0.00018846219,0.00021758032,0.00018415083],"category_scores_gemma":[0.0013004545,0.00030372274,0.00018297134,0.00032777674,0.0002911554,0.00012524062,0.0002656494,0.00021947743,0.00006731122],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025290163,0.000029316365,0.89779896,0.000063310064,0.00003065825,0.002431183,0.00068114663,0.00014652494,0.09154487,0.000023499771,0.000056327666,0.006941341],"study_design_scores_gemma":[0.000010597477,0.00021284648,0.97182167,0.00002363342,0.000036370322,0.007859366,0.0004926307,0.0005219541,0.018691761,0.000014983969,0.00030930995,0.000004890413],"about_ca_topic_score_codex":0.002194592,"about_ca_topic_score_gemma":0.0023931377,"teacher_disagreement_score":0.002194592,"about_ca_system_score_codex":0.00021486888,"about_ca_system_score_gemma":0.00014188408,"threshold_uncertainty_score":0.0043635964},"labels":[],"label_agreement":null},{"id":"W2136746436","doi":"10.1128/jcm.38.1.71-78.2000","title":"Characterization of<i>Streptococcus agalactiae</i>Isolates of Bovine and Human Origin by Randomly Amplified Polymorphic DNA Analysis","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"","keywords":"RAPD; Biology; Serotype; Streptococcus agalactiae; Microbiology; Genetic diversity; Streptococcus; Bacteria; Virology; Genetics; Population","score_opus":0.022790431552415717,"score_gpt":0.3382485454625607,"score_spread":0.315458113910145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136746436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955012,0.000900008,0.0012347803,0.00008025842,0.000011950301,0.000041979703,0.001480357,0.000015078227,0.0007343484],"genre_scores_gemma":[0.9919843,0.0005924004,0.0038105815,0.00011687705,0.000017046534,0.000028045597,0.0027737527,0.0000088437255,0.0006681397],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996592,0.00005551844,0.000029337523,0.00008465681,0.000102202896,0.00006905396],"domain_scores_gemma":[0.9995474,0.00010043727,0.000105490995,0.00002023176,0.00017871818,0.00004770317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002443765,0.00025942203,0.00027573353,0.0006884348,0.0002656975,0.00036366357,0.00014862845,0.00028189938,0.0005032368],"category_scores_gemma":[0.00067165477,0.00008367921,0.00019924695,0.0007201367,0.00020914795,0.0000686293,0.00010485148,0.00021188153,0.00024974512],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075129373,0.00019471992,0.43863517,0.00033373322,0.000097902506,0.0012844929,0.00220942,0.0003875481,0.5216436,0.00013914167,0.0007263115,0.03359667],"study_design_scores_gemma":[0.00001514795,0.0006814115,0.95534444,0.00007233647,0.00008937952,0.003022265,0.000979359,0.0008133202,0.031365458,0.000039955463,0.0075572007,0.00001972905],"about_ca_topic_score_codex":0.041443523,"about_ca_topic_score_gemma":0.03228676,"teacher_disagreement_score":0.041443523,"about_ca_system_score_codex":0.00032093684,"about_ca_system_score_gemma":0.0004623624,"threshold_uncertainty_score":0.08240461},"labels":[],"label_agreement":null},{"id":"W2137220504","doi":"10.1128/jcm.01243-06","title":"Evaluation of Commercial Rubella Immunoglobulin G Avidity Assays","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Avidity; Kappa; Rubella; Rubella virus; Immunoglobulin G; Virology; Antibody; Medicine; Immunology; Biology; Vaccination; Measles","score_opus":0.1173655188127712,"score_gpt":0.4501108921793475,"score_spread":0.33274537336657634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137220504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96983474,0.006197306,0.018952724,0.000115301475,0.00019250967,0.0002613823,0.0003939937,0.00035895707,0.003693011],"genre_scores_gemma":[0.9834487,0.00059740315,0.014060198,0.00007160071,0.000064970736,0.00009540057,0.000654879,0.000045476514,0.00096148765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.982888,0.0048168055,0.001264305,0.002962804,0.0073121614,0.0007559445],"domain_scores_gemma":[0.98392165,0.008057613,0.001492989,0.0010869487,0.004869411,0.0005714158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010996922,0.0013572935,0.0009605588,0.002204385,0.0005103805,0.0015329433,0.001395576,0.0017050316,0.0017439905],"category_scores_gemma":[0.01889077,0.00060125056,0.00071303116,0.0010894784,0.0010373202,0.00077024766,0.00073355396,0.00067911437,0.00078188936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007405563,0.001635272,0.18903123,0.0022951001,0.0009098227,0.00045181354,0.0017151402,0.001995218,0.6891638,0.00073952234,0.0009156491,0.103741825],"study_design_scores_gemma":[0.0004258766,0.01579408,0.17598373,0.00024015411,0.001329151,0.0027002168,0.0005961032,0.015986638,0.7787242,0.0005458639,0.007479738,0.00019418658],"about_ca_topic_score_codex":0.0018266402,"about_ca_topic_score_gemma":0.0019966566,"teacher_disagreement_score":0.010996922,"about_ca_system_score_codex":0.0009151751,"about_ca_system_score_gemma":0.00039848595,"threshold_uncertainty_score":0.05815798},"labels":[],"label_agreement":null},{"id":"W2137456143","doi":"10.1128/jcm.42.6.2855-2857.2004","title":"First Case Report of Catheter-Related Bacteremia Due to “ <i>Mycobacterium lacticola</i> ”","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Bacteremia; Microbiology; Mycobacterium; Catheter; Medicine; Gram-negative bacterial infections; Virology; Biology; Antibiotics; Tuberculosis; Pathology; Surgery","score_opus":0.04059883750324347,"score_gpt":0.3738791676794304,"score_spread":0.33328033017618697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137456143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89947855,0.011762503,0.011839297,0.013770467,0.00496127,0.0005313078,0.00068543496,0.0009483055,0.056022912],"genre_scores_gemma":[0.98004705,0.0023146672,0.0034319696,0.004385027,0.004990537,0.000103197475,0.00024853268,0.000083841514,0.0043952237],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9992422,0.00014980356,0.00006993298,0.00015170735,0.000101453064,0.0002848968],"domain_scores_gemma":[0.9974267,0.00078477425,0.0005343279,0.0003498514,0.00016563664,0.0007386928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005100007,0.0020058528,0.001337252,0.0013639746,0.0029667842,0.001836852,0.0015856994,0.007800355,0.0042916154],"category_scores_gemma":[0.004170078,0.0010955846,0.0012837491,0.0008731933,0.0017517805,0.0020387056,0.0018149309,0.0035383315,0.0017947688],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008347424,0.00017145436,0.005415403,0.000059804115,0.000028572456,0.98840976,0.00033718845,0.00004837564,0.0008999799,0.00027854482,0.0019826505,0.0022847822],"study_design_scores_gemma":[0.000036002468,0.00026235537,0.0031748002,0.000023370705,0.000024290173,0.9931117,0.00020167271,0.00010770074,0.00044785824,0.00015455544,0.002436072,0.000019528185],"about_ca_topic_score_codex":0.0014648038,"about_ca_topic_score_gemma":0.002395428,"teacher_disagreement_score":0.007800355,"about_ca_system_score_codex":0.0009784213,"about_ca_system_score_gemma":0.0007734977,"threshold_uncertainty_score":0.014356911},"labels":[],"label_agreement":null},{"id":"W2137499186","doi":"10.1128/jcm.00766-09","title":"Multiplex Real-Time PCR for Rapid Staphylococcal Cassette Chromosome <i>mec</i> Typing","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital","funders":"","keywords":"Typing; Staphylococcus aureus; Multiplex; Multiplex polymerase chain reaction; Biology; Microbiology; SCCmec; Concordance; Staphylococcal infections; Polymerase chain reaction; Virology; Methicillin-resistant Staphylococcus aureus; Genetics; Gene; Bacteria","score_opus":0.0479665406059732,"score_gpt":0.3757013521361863,"score_spread":0.32773481153021305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137499186","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24803098,0.0036839512,0.7343005,0.000322265,0.00065818586,0.0014514369,0.002791447,0.0042869714,0.004474328],"genre_scores_gemma":[0.28930065,0.0013426269,0.69885564,0.00037142972,0.00015966463,0.0020635396,0.0030839613,0.0002529615,0.004569531],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99580294,0.00092034496,0.00032762592,0.0014701657,0.0010788462,0.00040012327],"domain_scores_gemma":[0.9983311,0.00062196486,0.00031308585,0.00020368281,0.0003917173,0.00013850859],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002874263,0.0013558891,0.001123778,0.0015791256,0.00031395958,0.0010494171,0.0010509604,0.0008637111,0.0018559508],"category_scores_gemma":[0.003312659,0.0007815325,0.00075542,0.00072423543,0.0005435202,0.0008970761,0.0007337414,0.0013509253,0.0014081381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004475966,0.00019633463,0.002629164,0.0001952358,0.000032378117,0.00014178765,0.0002027755,0.0014800532,0.95101184,0.0007449329,0.00085171754,0.04206624],"study_design_scores_gemma":[0.00013354346,0.001591983,0.008519122,0.00008637061,0.00011158432,0.0009640996,0.00011037133,0.046643957,0.91721237,0.0007779058,0.023698824,0.00014986655],"about_ca_topic_score_codex":0.00055296835,"about_ca_topic_score_gemma":0.00080882624,"teacher_disagreement_score":0.002874263,"about_ca_system_score_codex":0.00056271686,"about_ca_system_score_gemma":0.0005579261,"threshold_uncertainty_score":0.015200794},"labels":[],"label_agreement":null},{"id":"W2137559802","doi":"10.1128/jcm.00327-11","title":"Evaluation and Clinical Validation of an Alcohol-Based Transport Medium for Preservation and Inactivation of Respiratory Viruses","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; McMaster University; Hospital for Sick Children; St. Joseph’s Healthcare Hamilton","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Rhinovirus; Virology; Multiplex; Virus; Biology; Multiplex polymerase chain reaction; Influenza A virus; Respiratory system; Human Parainfluenza Virus; Microbiology; Human metapneumovirus; Respiratory tract infections; Polymerase chain reaction; Bioinformatics","score_opus":0.4625320406212179,"score_gpt":0.5436982052967513,"score_spread":0.08116616467553339,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137559802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924908,0.0014068257,0.005087048,0.000052474843,0.000023063722,0.0004941033,0.00008503791,0.000048233596,0.0003123846],"genre_scores_gemma":[0.984339,0.0014047952,0.012406529,0.0000593974,0.00002671191,0.00037522023,0.000609067,0.000036311256,0.0007428698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794585,0.0011300439,0.00015084732,0.00023841228,0.00040372324,0.00013112833],"domain_scores_gemma":[0.9980385,0.0005580845,0.0003983497,0.00020853759,0.0006788084,0.00011779171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042185956,0.00072386145,0.00044969702,0.0005546734,0.00035853815,0.0008072435,0.00084959617,0.00057373394,0.00070394424],"category_scores_gemma":[0.0050927056,0.00023819601,0.0002848382,0.0003017083,0.0010883589,0.0005681937,0.00062851317,0.00039224737,0.00023657615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057257395,0.000942211,0.014452748,0.00035733558,0.00006173002,0.00025108777,0.00047939748,0.00070795236,0.95322543,0.00016231663,0.00010910786,0.023524836],"study_design_scores_gemma":[0.00039649595,0.051084645,0.026084641,0.000121844256,0.00023812239,0.0016306656,0.00056386366,0.005232569,0.90972924,0.0000702089,0.00479538,0.000052286603],"about_ca_topic_score_codex":0.0018112331,"about_ca_topic_score_gemma":0.0011934885,"teacher_disagreement_score":0.0042185956,"about_ca_system_score_codex":0.0008623686,"about_ca_system_score_gemma":0.0010348423,"threshold_uncertainty_score":0.022310317},"labels":[],"label_agreement":null},{"id":"W2137619099","doi":"10.1128/jcm.43.4.1752-1767.2005","title":"Species of <i>Phaeoacremonium</i> Associated with Infections in Humans and Environmental Reservoirs in Infected Woody Plants","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":154,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ontario Ministry of Health and Long-Term Care; University of Alberta","keywords":"Biology; Phylogenetic tree; Phaeohyphomycosis; Taxon; Phylogenetics; Botany; Ascomycota; Evolutionary biology; Zoology; Gene; Microbiology; Genetics","score_opus":0.01737910947530912,"score_gpt":0.27442838017470295,"score_spread":0.2570492706993938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137619099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745625,0.000805801,0.00036219246,0.00006178998,0.000008423579,0.0000120751065,0.00015438473,0.000012056834,0.0011270544],"genre_scores_gemma":[0.9976672,0.00059787877,0.0010590975,0.000047737834,0.000013673272,0.000004940437,0.00025769594,0.0000028909305,0.0003488878],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998599,0.000025811447,0.000021502772,0.00003669225,0.000025274843,0.000030796422],"domain_scores_gemma":[0.99980074,0.00004299588,0.00008704994,0.000017016711,0.000023822857,0.000028412527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013158986,0.00013877844,0.0001246334,0.00052911066,0.00030750374,0.0002913584,0.00014166374,0.00025447988,0.0013752733],"category_scores_gemma":[0.00050789694,0.00009863162,0.00008962899,0.0003873836,0.00027990952,0.00021836904,0.00021706562,0.00013847758,0.00024872855],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074625725,0.00008954553,0.80559146,0.00034080222,0.000035241774,0.014277296,0.0012763846,0.00013751589,0.119513236,0.00028110537,0.0010051581,0.056705885],"study_design_scores_gemma":[0.000015383861,0.00028174822,0.89997816,0.000091362235,0.000040925785,0.07996471,0.0010985652,0.00019473517,0.012728028,0.00021878799,0.0053684358,0.00001901125],"about_ca_topic_score_codex":0.0008040239,"about_ca_topic_score_gemma":0.0008425408,"teacher_disagreement_score":0.0013752733,"about_ca_system_score_codex":0.00008761288,"about_ca_system_score_gemma":0.000108270695,"threshold_uncertainty_score":0.004600823},"labels":[],"label_agreement":null},{"id":"W2137769175","doi":"10.1128/jcm.00883-10","title":"Phylogeny and Identification of <i>Nocardia</i> Species on the Basis of Multilocus Sequence Analysis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":130,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Public Health Agency of Canada","funders":"","keywords":"rpoB; Biology; Nocardia; 16S ribosomal RNA; Sequence analysis; Genetics; Phylogenetic tree; Phylogenetics; Nocardiosis; Locus (genetics); DNA gyrase; Multilocus sequence typing; Microbiology; Gene; Genotype; Bacteria","score_opus":0.05773235361761904,"score_gpt":0.3801256549034335,"score_spread":0.32239330128581445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137769175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98951334,0.0014898864,0.006373956,0.00009189684,0.000019620846,0.00006023811,0.0005111039,0.000055854252,0.001884126],"genre_scores_gemma":[0.98433554,0.00053567963,0.0133040175,0.00005469724,0.0000114014,0.000027665996,0.0013480098,0.000019235138,0.0003637024],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99955434,0.000099562494,0.00005562614,0.00011252767,0.000108753346,0.00006913547],"domain_scores_gemma":[0.99952376,0.000081906146,0.00016402747,0.000032243403,0.0001514426,0.000046634457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053837267,0.00026022267,0.00027099877,0.0015236681,0.00025329617,0.00062729744,0.00020122278,0.00024921802,0.0005344679],"category_scores_gemma":[0.0012466647,0.00010445977,0.0002827381,0.0008212157,0.00019359324,0.00026589114,0.00032732423,0.00029627726,0.00025340437],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005043935,0.0000808723,0.20219737,0.00029456356,0.00013458685,0.00057290826,0.0009099778,0.0016938586,0.74800014,0.0006971761,0.00038987366,0.044524215],"study_design_scores_gemma":[0.000037179147,0.0006840506,0.8570379,0.00031371447,0.00021468704,0.0031054048,0.0014568024,0.013843165,0.10470897,0.00075365684,0.017787585,0.000056902893],"about_ca_topic_score_codex":0.0028876115,"about_ca_topic_score_gemma":0.0018824161,"teacher_disagreement_score":0.0028876115,"about_ca_system_score_codex":0.00043108134,"about_ca_system_score_gemma":0.00026111162,"threshold_uncertainty_score":0.005741596},"labels":[],"label_agreement":null},{"id":"W2137827707","doi":"10.1128/jcm.38.5.1866-1868.2000","title":"Performance of the ImmunoCard STAT! E. coli O157:H7 Test for Detection of <i>Escherichia coli</i> O157:H7 in Stools","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Health Sciences Centre; Children's Hospital of Eastern Ontario","funders":"","keywords":"Escherichia coli; stat; Microbiology; Medicine; False positive paradox; Biology; Virology","score_opus":0.023544058630675838,"score_gpt":0.3308304698293113,"score_spread":0.3072864111986355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137827707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99754494,0.0003683672,0.00076145295,0.00004594983,0.000018854967,0.000017170263,0.0000879236,0.000016849724,0.0011383403],"genre_scores_gemma":[0.9991891,0.00009596248,0.00041305946,0.000031734915,0.000009677615,0.000005221937,0.00013099439,0.0000034756283,0.00012079007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99823606,0.00069309777,0.00015956997,0.00025781142,0.0004954548,0.00015787706],"domain_scores_gemma":[0.9968882,0.0012784722,0.0006591174,0.00020164865,0.00063810206,0.00033457694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023109382,0.00041342012,0.00038554115,0.0005569949,0.0002520891,0.00052276143,0.00029393614,0.0006264903,0.0007124188],"category_scores_gemma":[0.0056643863,0.00031280363,0.00039401726,0.00033259572,0.0003772353,0.00033781916,0.0001658244,0.0002990872,0.0006238418],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002569193,0.0004170572,0.9663762,0.000058755486,0.000079618774,0.00044339738,0.00025937735,0.00025471277,0.016418258,0.000039473813,0.00038595474,0.012698055],"study_design_scores_gemma":[0.00009757207,0.0063286154,0.97527254,0.00003460387,0.00010807333,0.0022585958,0.00015452351,0.0020948234,0.012707389,0.000041738596,0.0008814873,0.000019945432],"about_ca_topic_score_codex":0.0013786624,"about_ca_topic_score_gemma":0.0011501745,"teacher_disagreement_score":0.0023109382,"about_ca_system_score_codex":0.00028348822,"about_ca_system_score_gemma":0.00028295032,"threshold_uncertainty_score":0.012221515},"labels":[],"label_agreement":null},{"id":"W2137916819","doi":"10.1128/jcm.02934-13","title":"Streptococcus suis-Related Prosthetic Joint Infection and Streptococcal Toxic Shock-Like Syndrome in a Pig Farmer in the United States","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Microbiology; Serotype; Meningitis; Toxic shock syndrome; Biology; Streptococcus; Virology; Streptococcaceae; Medicine; Virulence; Staphylococcus aureus; Antibiotics; Bacteria; Pediatrics","score_opus":0.03710784745699839,"score_gpt":0.346097870796588,"score_spread":0.3089900233395896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137916819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99619746,0.00026350335,0.00028325562,0.00067748,0.00005966434,0.00003353272,0.000060286464,0.00001496587,0.002409962],"genre_scores_gemma":[0.99892235,0.0001428185,0.000111992784,0.00044071316,0.000038141185,0.0000047286894,0.000034607136,0.000001944281,0.00030278077],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9995844,0.00007762825,0.000039053073,0.00008482939,0.000078516794,0.00013561104],"domain_scores_gemma":[0.999366,0.00011780416,0.00013995676,0.000028194321,0.00008443318,0.00026363198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003537322,0.00075285725,0.0004330934,0.0010421219,0.0018361266,0.0005691051,0.00061212765,0.0021648554,0.0017726024],"category_scores_gemma":[0.00083841995,0.00056774815,0.00047277237,0.0005389441,0.0008336326,0.00074526866,0.00059244956,0.0010579525,0.0002890575],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019737595,0.0007313582,0.5088166,0.00005862108,0.00006627363,0.47953835,0.0018294839,0.00017504193,0.0043891934,0.00018589284,0.001101944,0.0029098217],"study_design_scores_gemma":[0.000046903468,0.0015442877,0.5746871,0.00009681307,0.00008473777,0.4152173,0.005355306,0.0009885288,0.0006656937,0.00017482933,0.0010937745,0.000044694734],"about_ca_topic_score_codex":0.016945101,"about_ca_topic_score_gemma":0.036622778,"teacher_disagreement_score":0.016945101,"about_ca_system_score_codex":0.0009509696,"about_ca_system_score_gemma":0.001102911,"threshold_uncertainty_score":0.033692896},"labels":[],"label_agreement":null},{"id":"W2138059684","doi":"10.1128/jcm.43.11.5816-5818.2005","title":"Group A Streptococcal Meningitis in a Pediatric Patient following Cochlear Implantation: Report of the First Case and Review of the Literature","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Meningitis; Cochlear implantation; Medicine; Cochlear implant; Bacterial meningitis; Food and drug administration; Pediatrics; Audiology; Medical emergency","score_opus":0.020002983959958427,"score_gpt":0.3525473617514038,"score_spread":0.33254437779144536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138059684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7171715,0.2454241,0.006622088,0.0054403027,0.0024723331,0.00050103077,0.00050085,0.00036025772,0.021507515],"genre_scores_gemma":[0.85621554,0.13035758,0.003021192,0.003024461,0.0040273704,0.0000927266,0.00028163035,0.0000571211,0.0029223908],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99937195,0.000069373025,0.0001373971,0.00011429085,0.00015374794,0.00015319689],"domain_scores_gemma":[0.9988984,0.00031439657,0.00036467196,0.00005246183,0.000119357195,0.00025084292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034323963,0.001639785,0.0019027829,0.0026402574,0.0017359871,0.0015671699,0.0012972486,0.0043702926,0.0016739984],"category_scores_gemma":[0.0019273811,0.0008073839,0.0010182472,0.0022603073,0.0012322366,0.002175848,0.0010727932,0.0024154694,0.0011707658],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020839489,0.000034650286,0.0037766693,0.00016981913,0.000009946283,0.99188775,0.00015320064,0.000030003024,0.0005209567,0.00004740109,0.00039962606,0.0029490755],"study_design_scores_gemma":[0.0000046152386,0.00007373587,0.00340998,0.00006424662,0.000023753235,0.9945116,0.00023961405,0.000029215975,0.0002638491,0.000044461143,0.0013235731,0.000011386769],"about_ca_topic_score_codex":0.0012741273,"about_ca_topic_score_gemma":0.0019619323,"teacher_disagreement_score":0.0043702926,"about_ca_system_score_codex":0.00091372954,"about_ca_system_score_gemma":0.001082426,"threshold_uncertainty_score":0.006629586},"labels":[],"label_agreement":null},{"id":"W2138120954","doi":"10.1128/jcm.39.9.3254-3259.2001","title":"International Surveillance of Bloodstream Infections Due to <i>Candida</i> Species: Frequency of Occurrence and In Vitro Susceptibilities to Fluconazole, Ravuconazole, and Voriconazole of Isolates Collected from 1997 through 1999 in the SENTRY Antimicrobial Surveillance Program","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":523,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Voriconazole; Fluconazole; Candida parapsilosis; Corpus albicans; Microbiology; Candida albicans; Candida glabrata; Candida tropicalis; Fungemia; Biology; Amphotericin B; Itraconazole; Antifungal","score_opus":0.02334154867666142,"score_gpt":0.33557037852402455,"score_spread":0.3122288298473631,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138120954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959598,0.00059279846,0.00017941794,0.000045416687,0.0000067307624,0.000019779774,0.0017142277,0.000020161124,0.0014616515],"genre_scores_gemma":[0.9954341,0.00043752417,0.00040569666,0.00005937639,0.000009520729,0.000010450553,0.0034454104,0.0000035616627,0.00019422277],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99962807,0.000055866934,0.0000579752,0.00008348445,0.000108249864,0.00006634179],"domain_scores_gemma":[0.9985091,0.00011755474,0.0006683305,0.00003935019,0.0004474836,0.00021813891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061731593,0.00025986414,0.00020470316,0.0014377664,0.00015810918,0.00039512577,0.00025020514,0.00018923866,0.00049514195],"category_scores_gemma":[0.0010809561,0.00010501568,0.00016756437,0.0010723175,0.00013169041,0.0002449527,0.0001902273,0.00020962331,0.0000815358],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008329833,0.000031186686,0.9893668,0.00003455444,0.000031862382,0.0000781235,0.00012825205,0.000074355405,0.0018469574,0.0000137900915,0.00054119475,0.0077695865],"study_design_scores_gemma":[0.000004863682,0.00011608505,0.99703884,0.000024836723,0.000023971546,0.00042369656,0.00014838473,0.00018458819,0.0011096987,0.000004111551,0.00091752224,0.000003413462],"about_ca_topic_score_codex":0.021686016,"about_ca_topic_score_gemma":0.021272376,"teacher_disagreement_score":0.021686016,"about_ca_system_score_codex":0.00043468687,"about_ca_system_score_gemma":0.00045801,"threshold_uncertainty_score":0.04311961},"labels":[],"label_agreement":null},{"id":"W2138240564","doi":"10.1128/jcm.00086-10","title":"Detection of Human Parechoviruses from Clinical Stool Samples in Aichi, Japan","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Virology; Serotype; Biology; Medicine","score_opus":0.1474559580911143,"score_gpt":0.4856760248033117,"score_spread":0.3382200667121974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138240564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900144,0.00046695757,0.000075845426,0.00002173673,0.0000071343766,0.000016285152,0.00014066455,0.000003974311,0.00026596925],"genre_scores_gemma":[0.99775034,0.0006521041,0.00046819367,0.00008602653,0.000017151375,0.000023184726,0.00073742773,0.0000028122029,0.00026285913],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996693,0.000056054163,0.00006991652,0.00007608985,0.0000689897,0.000059542755],"domain_scores_gemma":[0.9994286,0.00007505774,0.00021107515,0.000027111722,0.00015714072,0.000101008554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003121929,0.0003269098,0.00041143116,0.0009887425,0.0005344748,0.00049111317,0.000186235,0.00036514693,0.00043286663],"category_scores_gemma":[0.00086149276,0.00036312884,0.00017373056,0.00088319945,0.00028405825,0.00029090096,0.00040073847,0.00024971846,0.0001281247],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001508254,0.000031769316,0.9764014,0.000097396456,0.000028722436,0.0022821855,0.0008247984,0.0000767189,0.014203547,0.000010905842,0.0002641052,0.005627633],"study_design_scores_gemma":[0.0000108116565,0.000110151814,0.99647224,0.000020462303,0.000019842772,0.0016833317,0.00059825904,0.00011520012,0.0005363875,0.0000043841546,0.00042403123,0.0000048158054],"about_ca_topic_score_codex":0.008786082,"about_ca_topic_score_gemma":0.021271309,"teacher_disagreement_score":0.008786082,"about_ca_system_score_codex":0.00032169957,"about_ca_system_score_gemma":0.00031179877,"threshold_uncertainty_score":0.017469883},"labels":[],"label_agreement":null},{"id":"W2138331708","doi":"10.1128/jcm.38.4.1390-1396.2000","title":"Diagnosis and Differentiation of<i>Mycoplasma hyopneumoniae</i>and<i>Mycoplasma hyorhinis</i>Infections in Pigs by PCR Amplification of the p36 and p46 Genes","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Mycoplasma hyopneumoniae; Biology; Amplicon; Primer (cosmetics); Polymerase chain reaction; Serology; Gene; Mycoplasma; Virology; Molecular biology; Microbiology; Mollicutes; Antigen; Antibody; Genetics; Chemistry","score_opus":0.02522810440559879,"score_gpt":0.314830425311298,"score_spread":0.2896023209056992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138331708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99182206,0.00081270107,0.0055106706,0.000058981346,0.00003885905,0.000100525256,0.00009736814,0.000047852907,0.001510865],"genre_scores_gemma":[0.9901924,0.0005801291,0.008590674,0.00008346894,0.000038861817,0.00005245608,0.00020733883,0.000008215713,0.00024641523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992613,0.00016936562,0.000080782294,0.00018620043,0.00012145331,0.00018080602],"domain_scores_gemma":[0.99935466,0.00021618935,0.00016096547,0.000033474054,0.00008218004,0.00015248817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009789752,0.00066219835,0.00045949512,0.0008932014,0.00020728911,0.00046584697,0.00025130823,0.0012974396,0.00040041958],"category_scores_gemma":[0.0010011914,0.00058069633,0.0004215277,0.00018928882,0.0005224235,0.00057847233,0.00030880317,0.0004859885,0.00028536553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011407451,0.00023031348,0.15101638,0.00031698198,0.000036740003,0.002830116,0.00034636786,0.00013070383,0.8288717,0.00009165205,0.0001078948,0.014880335],"study_design_scores_gemma":[0.00015898791,0.0052433126,0.7685567,0.0002094348,0.00021685568,0.027882626,0.0012170018,0.004665365,0.1889745,0.00025073474,0.002562025,0.00006240138],"about_ca_topic_score_codex":0.00061143877,"about_ca_topic_score_gemma":0.00072998495,"teacher_disagreement_score":0.0012974396,"about_ca_system_score_codex":0.0001935327,"about_ca_system_score_gemma":0.0002166713,"threshold_uncertainty_score":0.0051773787},"labels":[],"label_agreement":null},{"id":"W2138529793","doi":"10.1128/jcm.43.8.4218-4220.2005","title":"Decreased Prevalence of Virulence Factors among Ciprofloxacin-Resistant Uropathogenic <i>Escherichia coli</i> Isolates","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Ciprofloxacin; Escherichia coli; Microbiology; Virulence; Fimbria; Genotype; Urinary system; Biology; Outpatient clinic; Medicine; Internal medicine; Gene; Antibiotics; Genetics","score_opus":0.017874150698275425,"score_gpt":0.3019626078339478,"score_spread":0.2840884571356724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138529793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9996037,0.000092885486,0.000048429763,0.000018823162,0.0000016259196,0.0000018396535,0.000062922445,0.0000049107935,0.00016490217],"genre_scores_gemma":[0.9995901,0.00005078866,0.000094807925,0.000013923222,0.0000055860205,0.0000021095568,0.00012952294,0.0000019287345,0.00011116891],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996252,0.00006456785,0.00004937839,0.000105787156,0.00008018642,0.00007482627],"domain_scores_gemma":[0.9987546,0.00020043546,0.00053647545,0.00007880329,0.00020507714,0.00022460148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021539851,0.00015410307,0.0002831117,0.00050201075,0.00021469504,0.00040668665,0.00014961838,0.00032796396,0.0016477063],"category_scores_gemma":[0.0022841697,0.00015563634,0.00010121339,0.00027900498,0.00022224318,0.00022717763,0.00016579073,0.0002774767,0.0002645885],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005001422,0.00010205426,0.9724482,0.000036222442,0.000018959148,0.00031584303,0.00019780433,0.000032726806,0.019687047,0.0000142546705,0.00021413667,0.0064325547],"study_design_scores_gemma":[0.0000059439494,0.000257674,0.9969773,0.000006077274,0.000011128655,0.0012750207,0.00010222855,0.000059020065,0.001122076,0.0000040916307,0.00017654532,0.000002934353],"about_ca_topic_score_codex":0.0023576566,"about_ca_topic_score_gemma":0.0027025996,"teacher_disagreement_score":0.0023576566,"about_ca_system_score_codex":0.00019174222,"about_ca_system_score_gemma":0.00016592167,"threshold_uncertainty_score":0.0055121183},"labels":[],"label_agreement":null},{"id":"W2138572375","doi":"10.1128/jcm.44.3.777-782.2006","title":"Single-Nucleotide Repeat Analysis for Subtyping <i>Bacillus anthracis</i> Isolates","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Public Health Agency of Canada; Defence Research and Development Canada","funders":"","keywords":"Multiple Loci VNTR Analysis; Bacillus anthracis; Subtyping; Biology; Variable number tandem repeat; Genetics; Genotype; Locus (genetics); Microsatellite; Genetic diversity; Tandem repeat; In silico; Computational biology; Genome; Gene; Population; Bacteria; Medicine","score_opus":0.03611395628353021,"score_gpt":0.3363613392951464,"score_spread":0.3002473830116162,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138572375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9761821,0.0007715852,0.020498684,0.00008259496,0.000021834265,0.0001034415,0.00097645103,0.00015111775,0.0012121231],"genre_scores_gemma":[0.9572567,0.0005261593,0.040375162,0.000029971034,0.000010886844,0.000047898648,0.0014053084,0.000020932894,0.0003268964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99950874,0.00014895688,0.0000539628,0.00008887812,0.00015156169,0.00004783362],"domain_scores_gemma":[0.9993942,0.00019560878,0.00013470843,0.000045601555,0.00013926117,0.00009059037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000427607,0.00024658127,0.00029610106,0.0012230107,0.00023051111,0.00032636357,0.00024474075,0.00031104137,0.0005524105],"category_scores_gemma":[0.0013086831,0.00015438958,0.00031351,0.0006330168,0.00016384311,0.00015815547,0.00016070419,0.00028273676,0.00038535797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022087424,0.00008913,0.022350455,0.00010309133,0.000020712352,0.00012774678,0.0000608258,0.00031656038,0.9659411,0.000055016237,0.00007058824,0.010643956],"study_design_scores_gemma":[0.00003877548,0.0013183354,0.13525744,0.000051351482,0.00017205457,0.002645151,0.00022156871,0.0067720055,0.8510265,0.00014646865,0.0023194652,0.0000309238],"about_ca_topic_score_codex":0.0009488188,"about_ca_topic_score_gemma":0.0016302965,"teacher_disagreement_score":0.0012230107,"about_ca_system_score_codex":0.0001477201,"about_ca_system_score_gemma":0.00023941598,"threshold_uncertainty_score":0.0022614002},"labels":[],"label_agreement":null},{"id":"W2138618978","doi":"10.1128/jcm.00998-06","title":"Genotyping of Measles Virus in Clinical Specimens on the Basis of Oligonucleotide Microarray Hybridization Patterns","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Public Health Agency; Thrasher Research Fund; U.S. Department of Health and Human Services; Elizabeth Glaser Pediatric AIDS Foundation; Public Health Agency of Canada; National Health and Medical Research Council; Bill and Melinda Gates Foundation","keywords":"Genotyping; Genotype; Biology; Measles virus; Oligonucleotide; Microarray; Genetics; DNA microarray; Molecular biology; Gene; Virology; Gene expression; Measles","score_opus":0.05632012267013677,"score_gpt":0.3678132577139599,"score_spread":0.31149313504382314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138618978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87273806,0.0015168053,0.119516924,0.00031482178,0.00009595485,0.000459302,0.0020074944,0.0005338607,0.0028168429],"genre_scores_gemma":[0.77848154,0.0012651767,0.21509987,0.0001883626,0.0000415116,0.00068276416,0.0022923702,0.00004349076,0.0019049565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902153,0.00034146055,0.00008275829,0.0002688077,0.00020596506,0.00007950041],"domain_scores_gemma":[0.99959403,0.00018482844,0.000047604914,0.0000447101,0.000102520324,0.000026292162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073294394,0.0003720123,0.00057999307,0.00062984927,0.00019723298,0.0003419461,0.0002652384,0.00055771554,0.0008270371],"category_scores_gemma":[0.0016545857,0.00023256638,0.00020705583,0.00046013462,0.0001917914,0.0002454233,0.00016946859,0.0003444318,0.0006002786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001872805,0.00002876941,0.0049445406,0.0000774487,0.000015510805,0.000054900913,0.000061345825,0.00038664715,0.983648,0.000114459894,0.00012486259,0.010356351],"study_design_scores_gemma":[0.000044629538,0.0014269096,0.08854343,0.000056824,0.00014021553,0.0016179818,0.00024724944,0.020881947,0.8786122,0.00069525186,0.0076901275,0.000043180837],"about_ca_topic_score_codex":0.000393251,"about_ca_topic_score_gemma":0.00059220573,"teacher_disagreement_score":0.0008270371,"about_ca_system_score_codex":0.00033817763,"about_ca_system_score_gemma":0.00017358916,"threshold_uncertainty_score":0.0038762093},"labels":[],"label_agreement":null},{"id":"W2138620668","doi":"10.1128/jcm.40.3.852-856.2002","title":"Trends in Antifungal Susceptibility of <i>Candida</i> spp. Isolated from Pediatric and Adult Patients with Bloodstream Infections: SENTRY Antimicrobial Surveillance Program, 1997 to 2000","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":322,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Pfizer Pharmaceuticals; Pfizer; Bristol-Myers Squibb","keywords":"Fluconazole; Posaconazole; Itraconazole; Voriconazole; Candida glabrata; Candida tropicalis; Candida parapsilosis; Amphotericin B; Fungemia; Microbiology; Medicine; Flucytosine; Biology; Internal medicine; Candida albicans; Antifungal","score_opus":0.014742871524709288,"score_gpt":0.3037921256094469,"score_spread":0.28904925408473764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138620668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732214,0.0007055439,0.00005380246,0.000084232306,0.0000049994137,0.000008158032,0.0012630883,0.000015511549,0.0005425074],"genre_scores_gemma":[0.9959733,0.0007087975,0.00020297224,0.00014984529,0.000018920655,0.00002056126,0.0027207835,0.0000041133503,0.00020075376],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994311,0.000060950588,0.0001169501,0.000108364766,0.00016851096,0.0001141153],"domain_scores_gemma":[0.9964097,0.00047580965,0.0016902636,0.000049121267,0.0009682907,0.00040682923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056153256,0.00023220523,0.00038514406,0.0013518739,0.00024711245,0.00061824155,0.00041230296,0.0005857431,0.000642872],"category_scores_gemma":[0.0029392191,0.00018290785,0.00023102092,0.001330425,0.00021693463,0.00054132857,0.00030318927,0.0006550639,0.00023994708],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089858,0.00002865632,0.9958145,0.000027427628,0.000019628204,0.00012706316,0.00013337801,0.00006144924,0.00036369212,0.0000092114415,0.00042592274,0.002899157],"study_design_scores_gemma":[0.000005786743,0.0001010514,0.9984042,0.000013566598,0.000014244816,0.0006556954,0.0001360881,0.00011976312,0.00019306838,0.0000027209742,0.0003515324,0.0000023905943],"about_ca_topic_score_codex":0.009309683,"about_ca_topic_score_gemma":0.009673161,"teacher_disagreement_score":0.009309683,"about_ca_system_score_codex":0.0006100519,"about_ca_system_score_gemma":0.00029951724,"threshold_uncertainty_score":0.018510997},"labels":[],"label_agreement":null},{"id":"W2138739762","doi":"10.1128/jcm.01469-09","title":"Enhanced Viral Etiological Diagnosis of Respiratory System Infection Outbreaks by Use of a Multitarget Nucleic Acid Amplification Assay","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; University of Alberta; Provincial Laboratory of Public Health","funders":"Fondation pour la Recherche Médicale","keywords":"Outbreak; Virology; Virus; Respiratory system; Etiology; Nucleic Acid Amplification Tests; Picornavirus; Biology; Medicine; RNA; Pathology","score_opus":0.11543946126105836,"score_gpt":0.42813738658312794,"score_spread":0.3126979253220696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138739762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958254,0.0006868678,0.002437192,0.000048692495,0.00000967996,0.00010727874,0.000104433464,0.000042039013,0.00073844404],"genre_scores_gemma":[0.99126256,0.00028375085,0.007929097,0.000061896695,0.000013745217,0.00003387971,0.00020237705,0.0000034112343,0.00020926747],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980172,0.0006636327,0.00010470096,0.00023829726,0.0008426653,0.00013344758],"domain_scores_gemma":[0.9973339,0.0012553214,0.00044845854,0.0001474616,0.00060660293,0.0002083506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023203602,0.00047326274,0.00028566635,0.001166943,0.00023474493,0.00057057885,0.00049104437,0.00036223143,0.0004153712],"category_scores_gemma":[0.0046751765,0.00028202654,0.00014267993,0.00044809812,0.0003957953,0.0003313238,0.00034945924,0.00031424107,0.00017969272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00127982,0.00030541996,0.8675994,0.00012140754,0.00005039365,0.00053219305,0.00037497914,0.0007297475,0.07732299,0.000043382835,0.00018380044,0.051456407],"study_design_scores_gemma":[0.0000864423,0.002811726,0.9582858,0.000039928625,0.00007866661,0.0036078994,0.00031240593,0.007617184,0.026010992,0.000038586346,0.0010808426,0.000029587014],"about_ca_topic_score_codex":0.020772409,"about_ca_topic_score_gemma":0.039169356,"teacher_disagreement_score":0.020772409,"about_ca_system_score_codex":0.0008002006,"about_ca_system_score_gemma":0.0007874641,"threshold_uncertainty_score":0.04130298},"labels":[],"label_agreement":null},{"id":"W2138750282","doi":"10.1128/jcm.00962-06","title":"Use of Pulsed-Field Gel Electrophoresis of Conserved XbaI Fragments for Identification of Swine<i>Salmonella</i>Serotypes","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Serotype; Salmonella; Biology; Pulsed-field gel electrophoresis; Gel electrophoresis; Identification (biology); Microbiology; Molecular biology; Genetics; Virology; Bacteria; Gene; Genotype","score_opus":0.06869875530449661,"score_gpt":0.32287400063420857,"score_spread":0.254175245329712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138750282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910251,0.00077873946,0.0066293236,0.00006357698,0.00001113546,0.000052690786,0.0002648127,0.000021187852,0.001153538],"genre_scores_gemma":[0.9651829,0.001227136,0.031561587,0.000046129204,0.0000071426925,0.00003796009,0.0012125821,0.000008848752,0.0007158111],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99967885,0.000068132125,0.000027857935,0.00006544408,0.00010538681,0.000054311997],"domain_scores_gemma":[0.99930346,0.00020651793,0.0001075627,0.00004903528,0.00025573306,0.00007769188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047805454,0.00030114187,0.00023920836,0.0007815589,0.00030514432,0.00040283665,0.0002610158,0.00020832161,0.0005536632],"category_scores_gemma":[0.0011121708,0.0001608825,0.00017300784,0.00062759465,0.00037615816,0.00021799374,0.00016962913,0.00023261807,0.00021820357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061248254,0.00013529217,0.10628971,0.00023777169,0.00006596891,0.0002313838,0.00049949763,0.00028461183,0.85632366,0.00013346817,0.00014532295,0.035040956],"study_design_scores_gemma":[0.0000593294,0.0022451805,0.6862565,0.00009594233,0.0003062931,0.0037729817,0.0013496795,0.0028138082,0.29785445,0.00016055568,0.005038915,0.000046389592],"about_ca_topic_score_codex":0.031405773,"about_ca_topic_score_gemma":0.047674708,"teacher_disagreement_score":0.031405773,"about_ca_system_score_codex":0.00047556157,"about_ca_system_score_gemma":0.0009130482,"threshold_uncertainty_score":0.06244594},"labels":[],"label_agreement":null},{"id":"W2138811876","doi":"10.1128/jcm.43.11.5819-5821.2005","title":"Molecular Identification of <i>Rhizomucor pusillus</i> as a Cause of Sinus-Orbital Zygomycosis in a Patient with Acute Myelogenous Leukemia","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Zygomycosis; Biology; Mucormycosis; Leukemia; Microbiology; Pathology; Medicine; Genetics; Amphotericin B","score_opus":0.022519124007776434,"score_gpt":0.34086906904436415,"score_spread":0.3183499450365877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138811876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974486,0.00028133695,0.0006362267,0.00024252715,0.000020425823,0.000032813467,0.00005923358,0.00001986244,0.0012588714],"genre_scores_gemma":[0.9991315,0.00014873176,0.00040641098,0.00008292653,0.000028969347,0.0000046413056,0.000047373836,0.000004723626,0.00014472246],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997819,0.000024615747,0.00002696723,0.000042222862,0.000041791052,0.00008254789],"domain_scores_gemma":[0.999632,0.00010607023,0.00008315914,0.000017904744,0.000024670499,0.0001362222],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015658035,0.0006042364,0.00045882634,0.0007555252,0.0007205245,0.0007255449,0.0002619275,0.0012107342,0.0008624492],"category_scores_gemma":[0.0009483447,0.0003588608,0.0003447876,0.00034128202,0.0005902475,0.0004720364,0.00032243467,0.00086729066,0.00034134858],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000378665,0.00015734094,0.11676477,0.00008313217,0.000020988256,0.8223202,0.0011226248,0.00024401348,0.051234838,0.00038095706,0.00047924332,0.006813211],"study_design_scores_gemma":[0.000045308123,0.0008592122,0.0997327,0.00004186841,0.000071362454,0.87784123,0.0009794454,0.0015252925,0.016984269,0.00020686192,0.0016795861,0.000032890483],"about_ca_topic_score_codex":0.0016268487,"about_ca_topic_score_gemma":0.0010054987,"teacher_disagreement_score":0.0016268487,"about_ca_system_score_codex":0.00035002205,"about_ca_system_score_gemma":0.0002285753,"threshold_uncertainty_score":0.003234744},"labels":[],"label_agreement":null},{"id":"W2138938016","doi":"10.1128/jcm.01213-08","title":"Comparison of Viral Isolation and Multiplex Real-Time Reverse Transcription-PCR for Confirmation of Respiratory Syncytial Virus and Influenza Virus Detection by Antigen Immunoassays","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Virology; Multiplex; Virus; Immunoassay; Reverse transcription polymerase chain reaction; Viral culture; Multiplex polymerase chain reaction; Reverse transcriptase; Influenza A virus; Antigen; Orthomyxoviridae; Pneumovirinae; Biology; Medicine; Real-time polymerase chain reaction; Viral disease; Paramyxoviridae; Polymerase chain reaction; Immunology; Antibody; Gene; Gene expression","score_opus":0.09807942303719555,"score_gpt":0.4579756683799407,"score_spread":0.3598962453427451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138938016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9336326,0.010560043,0.05270007,0.00025648475,0.00029752354,0.0002618834,0.00038361154,0.00039114174,0.0015166256],"genre_scores_gemma":[0.9305706,0.0019494694,0.0655375,0.00023116314,0.00014844799,0.00026626716,0.00045033984,0.000054425866,0.0007918838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9876984,0.0045370962,0.0006769015,0.0023551418,0.004267174,0.00046544723],"domain_scores_gemma":[0.98453856,0.010429258,0.0019163627,0.00076949527,0.0019173608,0.00042893508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010260909,0.0012293486,0.0009453974,0.0015784657,0.00022354271,0.0018977444,0.0011488365,0.00088114425,0.0005204019],"category_scores_gemma":[0.01720364,0.0009290649,0.00058362575,0.0006919067,0.00069318817,0.00091502425,0.0005689882,0.0010174036,0.0004086543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0132325515,0.0015509789,0.15192097,0.0011953604,0.0009151516,0.00043692268,0.001326436,0.010935017,0.61466557,0.0007188412,0.0006803821,0.20242187],"study_design_scores_gemma":[0.0006552151,0.019623475,0.12789528,0.00025812467,0.0010307105,0.0048083193,0.0005047088,0.173428,0.66532713,0.00072943105,0.005398022,0.00034163267],"about_ca_topic_score_codex":0.00071821455,"about_ca_topic_score_gemma":0.0010014462,"teacher_disagreement_score":0.010260909,"about_ca_system_score_codex":0.0008159641,"about_ca_system_score_gemma":0.0004365314,"threshold_uncertainty_score":0.0542655},"labels":[],"label_agreement":null},{"id":"W2139080354","doi":"10.1128/jcm.41.1.84-89.2003","title":"Regional Distribution of Antibodies to Herpes Simplex Virus Type 1 (HSV-1) and HSV-2 in Men and Women in Ontario, Canada","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care; McMaster University; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program","funders":"U.S. Food and Drug Administration; GlaxoSmithKline","keywords":"Seroprevalence; Herpes simplex virus; Serology; Medicine; Population; Confidence interval; Prenatal care; Immunology; Antibody; Virology; Obstetrics; Demography; Internal medicine; Virus; Environmental health","score_opus":0.04055352152281445,"score_gpt":0.34662578940024247,"score_spread":0.30607226787742803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139080354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99553466,0.0013318593,0.0001058223,0.00010485539,0.000007485416,0.000021318232,0.0014381781,0.000009869863,0.001445954],"genre_scores_gemma":[0.99815816,0.00057416665,0.00012001771,0.000035231,0.00000434366,0.0000060339917,0.00049099507,0.0000024680694,0.0006085645],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994972,0.000033745302,0.00003374401,0.00009756214,0.00019909623,0.00013871124],"domain_scores_gemma":[0.99925,0.000053932425,0.00020555941,0.000020705556,0.00028971196,0.00018005529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034053696,0.00028801494,0.0003202531,0.0012185351,0.0012325211,0.00063795474,0.0005723837,0.00021039281,0.0010283373],"category_scores_gemma":[0.0009924783,0.00035948242,0.000429506,0.0019815078,0.0005756675,0.00025948955,0.0004817728,0.0002188474,0.00013519062],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040966486,0.0000049976984,0.9959688,0.000023413078,0.000033579516,0.000075349264,0.00063340954,0.00006842359,0.00028937982,0.000027463131,0.00027255662,0.0025615843],"study_design_scores_gemma":[0.000002049535,0.000010359202,0.9989411,0.000009951749,0.000011075943,0.00006235952,0.00044718475,0.00008062613,0.00002830246,0.000004477587,0.00039861782,0.0000039632773],"about_ca_topic_score_codex":0.9874046,"about_ca_topic_score_gemma":0.9902367,"teacher_disagreement_score":0.012595415,"about_ca_system_score_codex":0.011492613,"about_ca_system_score_gemma":0.008585506,"threshold_uncertainty_score":0.08338511},"labels":[],"label_agreement":null},{"id":"W2139137497","doi":"10.1128/jcm.41.5.1925-1928.2003","title":"BVBlue Test for Diagnosis of Bacterial Vaginosis","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Bacterial vaginosis; Microbiology; Medicine; Test (biology); Biology; Ecology","score_opus":0.0732259572499072,"score_gpt":0.4061982196277699,"score_spread":0.3329722623778627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139137497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8908863,0.033791665,0.008353201,0.002032158,0.0011340614,0.0013753679,0.004276602,0.00073814066,0.057412434],"genre_scores_gemma":[0.9462921,0.008920115,0.01753256,0.0016221369,0.00032786743,0.0008113725,0.005726642,0.000055319455,0.018711912],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992169,0.00019107915,0.000065375425,0.000095947675,0.00030960832,0.00012105822],"domain_scores_gemma":[0.99923134,0.00014795054,0.00021271237,0.000024200035,0.0002528461,0.000130915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057680276,0.000513622,0.0006906754,0.001956298,0.00030513038,0.0003982163,0.0007668951,0.00090738887,0.007978596],"category_scores_gemma":[0.002420369,0.00017327032,0.0003171261,0.0009890652,0.00023149364,0.00035842604,0.0005163517,0.0005792105,0.002519324],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026451426,0.0012071033,0.78769577,0.0013165247,0.00020488283,0.00702859,0.00066723436,0.00040820063,0.054251414,0.001032234,0.032388005,0.11115482],"study_design_scores_gemma":[0.00045099595,0.005214642,0.85141516,0.0014275981,0.00023909513,0.038648255,0.0010313431,0.0046393517,0.025867319,0.0010096427,0.06996489,0.0000917485],"about_ca_topic_score_codex":0.000894605,"about_ca_topic_score_gemma":0.0010333399,"teacher_disagreement_score":0.007978596,"about_ca_system_score_codex":0.00026843217,"about_ca_system_score_gemma":0.00031406764,"threshold_uncertainty_score":0.02669102},"labels":[],"label_agreement":null},{"id":"W2139322418","doi":"10.1128/jcm.42.9.4253-4260.2004","title":"Identification and Typing of <i>Malassezia</i> Species by Amplified Fragment Length Polymorphism and Sequence Analyses of the Internal Transcribed Spacer and Large-Subunit Regions of Ribosomal DNA","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":129,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Women's College Hospital; University of Toronto; Mediprobe Research (Canada); Sunnybrook Health Science Centre","funders":"","keywords":"Amplified fragment length polymorphism; Internal transcribed spacer; Malassezia; Biology; Ribosomal DNA; Spacer DNA; Genetics; Ribosomal RNA; Genotype; DNA sequencing; Typing; Sequence analysis; Polymerase chain reaction; DNA; Gene; Microbiology; Genetic diversity; Phylogenetic tree; Population","score_opus":0.07869886885070569,"score_gpt":0.38399075240038816,"score_spread":0.30529188354968245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139322418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894785,0.0026877478,0.0052167685,0.00011189313,0.00002070109,0.00006772386,0.00065754465,0.000036890207,0.0017222324],"genre_scores_gemma":[0.98152864,0.001824501,0.0141760195,0.000076930046,0.000015861548,0.000032990938,0.0011719484,0.0000142111785,0.0011588251],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99959725,0.00003883245,0.00003561217,0.000102822625,0.0001542404,0.000071255694],"domain_scores_gemma":[0.9995708,0.000064169384,0.00016325877,0.000024189287,0.00013778191,0.000039856714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028025292,0.00038703624,0.0002998395,0.001015673,0.0002137202,0.0005761733,0.00031957476,0.0002647596,0.00047954055],"category_scores_gemma":[0.0008112218,0.00013174566,0.0002510465,0.00095481495,0.00036598914,0.00023275583,0.00019264255,0.00028870854,0.00023403738],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000250561,0.00007897586,0.045241922,0.00014513187,0.000030504669,0.00026404514,0.00025095989,0.00013248931,0.9326102,0.00013370746,0.00008749271,0.02077393],"study_design_scores_gemma":[0.000021168898,0.00063116744,0.5574562,0.000059827587,0.00013168892,0.0033570032,0.0008528931,0.0011146496,0.42895666,0.00018968976,0.007194331,0.00003473751],"about_ca_topic_score_codex":0.025007294,"about_ca_topic_score_gemma":0.02761923,"teacher_disagreement_score":0.025007294,"about_ca_system_score_codex":0.0005469261,"about_ca_system_score_gemma":0.00043875375,"threshold_uncertainty_score":0.049723506},"labels":[],"label_agreement":null},{"id":"W2139343419","doi":"10.1128/jcm.02024-14","title":"Performance of Rapid Influenza Diagnostic Testing in Outbreak Settings","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"Research Innovation and Development Trust, University of Malta; F. Hoffmann-La Roche; GlaxoSmithKline","keywords":"Outbreak; Virology; Medicine; Context (archaeology); Virus; Influenza A virus; Diagnostic test; Disease; Pandemic; Orthomyxoviridae; Intensive care medicine; Infectious disease (medical specialty); Biology; Emergency medicine; Internal medicine; Coronavirus disease 2019 (COVID-19)","score_opus":0.13011490187427732,"score_gpt":0.43763931177941606,"score_spread":0.30752440990513874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139343419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873158,0.0018479131,0.003704779,0.00026021904,0.000059779293,0.00020331639,0.00059293304,0.00014339774,0.005871961],"genre_scores_gemma":[0.99546057,0.00040490538,0.0033421651,0.0000915249,0.000016793923,0.00003288163,0.00031722008,0.000009055315,0.00032484866],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99313194,0.0028260828,0.000763994,0.0008951015,0.0017872,0.00059567846],"domain_scores_gemma":[0.98847055,0.005492678,0.0024168983,0.00060263334,0.0026270647,0.00039015908],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009465069,0.0007430253,0.00057204225,0.0012156873,0.00044927243,0.001255402,0.00067147677,0.00051916554,0.0010801392],"category_scores_gemma":[0.02264547,0.00035052496,0.00036164504,0.00077006273,0.00065617677,0.0009382608,0.00065529183,0.00046458244,0.00033381904],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010832982,0.00023993668,0.92190325,0.00044333717,0.00011540912,0.0005951995,0.0012463912,0.0019470166,0.014190436,0.00018343011,0.00072297576,0.057329323],"study_design_scores_gemma":[0.000048224338,0.0024303116,0.95873016,0.00015654173,0.00011869937,0.0012534886,0.0016257969,0.0063117915,0.026100768,0.00022739054,0.0029443128,0.0000524951],"about_ca_topic_score_codex":0.030834565,"about_ca_topic_score_gemma":0.03613198,"teacher_disagreement_score":0.030834565,"about_ca_system_score_codex":0.0020432936,"about_ca_system_score_gemma":0.0017547514,"threshold_uncertainty_score":0.061310172},"labels":[],"label_agreement":null},{"id":"W2139376526","doi":"10.1128/jcm.00450-08","title":"Multicenter Evaluation of the Vitek 2 Anaerobe and <i>Corynebacterium</i> Identification Card","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"16S ribosomal RNA; Corynebacterium; Biology; Microbiology; Reproducibility; Clinical microbiology; Bacteria; Genetics; Chromatography; Chemistry","score_opus":0.045758854542911405,"score_gpt":0.3377306862475678,"score_spread":0.2919718317046564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139376526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9803422,0.0013042656,0.012081792,0.00025774463,0.00016133185,0.002102027,0.0019180375,0.00034037026,0.0014922201],"genre_scores_gemma":[0.9462238,0.0005841382,0.041152533,0.00042067675,0.000075798656,0.0012214212,0.00809514,0.0001634097,0.0020630825],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9774039,0.008887226,0.0019874687,0.0036302158,0.0073353252,0.0007557481],"domain_scores_gemma":[0.98440546,0.0023483734,0.0026235029,0.0014395982,0.007797282,0.0013857796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03472839,0.00105067,0.0009688797,0.0008681365,0.00050230604,0.0021019923,0.0024528636,0.0010964861,0.0015752675],"category_scores_gemma":[0.015376831,0.00059391896,0.0005623022,0.0008654296,0.0007776691,0.000834097,0.0014693261,0.00096705416,0.00061865855],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.11445252,0.009052554,0.23585814,0.0014365937,0.0007862621,0.00044448668,0.0016067036,0.005359304,0.43265527,0.0008944035,0.006469226,0.19098434],"study_design_scores_gemma":[0.008396495,0.20660447,0.4196023,0.00036108572,0.001093055,0.0027824752,0.00072108343,0.019698787,0.3095316,0.00016693266,0.030765185,0.000276518],"about_ca_topic_score_codex":0.0021443937,"about_ca_topic_score_gemma":0.0013793284,"teacher_disagreement_score":0.03472839,"about_ca_system_score_codex":0.0015359299,"about_ca_system_score_gemma":0.0020513898,"threshold_uncertainty_score":0.18366349},"labels":[],"label_agreement":null},{"id":"W2139377692","doi":"10.1128/jcm.42.2.660-664.2004","title":"Detection of Species-Specific <i>Helicobacter</i> Ribosomal DNA in Intestinal Biopsy Samples from a Population-Based Cohort of Patients with Ulcerative Colitis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Manitoba; McMaster University; University of Toronto; Canadian Society of Intestinal Research; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Ulcerative colitis; Inflammatory bowel disease; Helicobacter; Helicobacter pylori; Biology; Gastroenterology; Gastritis; Population; Immunology; Medicine; Internal medicine; Disease","score_opus":0.027313936994896867,"score_gpt":0.28834860273022367,"score_spread":0.2610346657353268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139377692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993954,0.00019260649,0.00009292814,0.000020534779,0.000005399331,0.000009547301,0.000065243024,0.000004238658,0.0002141147],"genre_scores_gemma":[0.9992335,0.00016407057,0.00014797569,0.000055810648,0.000017786666,0.000013865117,0.00019782272,0.0000026705163,0.00016651259],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995684,0.000088464316,0.000045004082,0.00013069753,0.00008937166,0.00007801367],"domain_scores_gemma":[0.9991775,0.00020956951,0.00022686117,0.00005792951,0.00012664146,0.00020144015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002817352,0.00041224028,0.0005563749,0.0011081969,0.00067016017,0.0006662167,0.00023825711,0.00071663345,0.0016430496],"category_scores_gemma":[0.002253993,0.00044248582,0.00020778441,0.00051321264,0.00061750045,0.00029733215,0.0003203401,0.0005036634,0.00042228986],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032705933,0.00012407475,0.9808741,0.000039185168,0.000046424313,0.0011578851,0.0005450864,0.000021371738,0.013955091,0.000015063578,0.0001419456,0.002752691],"study_design_scores_gemma":[0.000019056783,0.00066664425,0.98918927,0.000009661155,0.000043751148,0.0077992254,0.0005498444,0.0000781978,0.0012504867,0.000014998464,0.0003723049,0.000006605202],"about_ca_topic_score_codex":0.001438993,"about_ca_topic_score_gemma":0.0013813738,"teacher_disagreement_score":0.0016430496,"about_ca_system_score_codex":0.00012841188,"about_ca_system_score_gemma":0.00011802945,"threshold_uncertainty_score":0.0054965615},"labels":[],"label_agreement":null},{"id":"W2139572726","doi":"10.1128/jcm.41.3.1289-1294.2003","title":"<i>Paracoccus yeeii</i> sp. nov. (Formerly CDC Group EO-2), a Novel Bacterial Species Associated with Human Infection","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"","keywords":"Biology; Paracoccus denitrificans; 16S ribosomal RNA; Microbiology; Phylogenetic tree; GenBank; Bacteria; Genetics; Gene","score_opus":0.034390463894688625,"score_gpt":0.30260161450175427,"score_spread":0.26821115060706563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139572726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98322785,0.0031390663,0.0035530785,0.0004217798,0.00031793595,0.00021953016,0.0020247814,0.00009897595,0.006996944],"genre_scores_gemma":[0.9757656,0.0016456827,0.009310424,0.0006993,0.00020591122,0.00010516204,0.007922377,0.00003072198,0.0043147593],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999691,0.000021440785,0.00003375593,0.00009704548,0.00005897113,0.00009779104],"domain_scores_gemma":[0.9997707,0.000017580309,0.00006893895,0.000027840946,0.00006120101,0.00005370891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001428234,0.00070147146,0.00030924982,0.0005104289,0.0007491858,0.0007907923,0.00036230605,0.00072132767,0.0011047133],"category_scores_gemma":[0.0003886935,0.0001376906,0.0002546869,0.00068764173,0.00033532328,0.0004769685,0.00056050293,0.0005519889,0.00068226585],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012840655,0.00042261527,0.24046803,0.00092910207,0.000114168666,0.0136380745,0.0014710489,0.001478735,0.65893084,0.001028359,0.008170456,0.07206458],"study_design_scores_gemma":[0.000107095744,0.0010248651,0.70083904,0.00042135039,0.00021047566,0.040216655,0.0037716818,0.003182417,0.13752209,0.00065786793,0.11193203,0.00011438955],"about_ca_topic_score_codex":0.010721812,"about_ca_topic_score_gemma":0.01137633,"teacher_disagreement_score":0.010721812,"about_ca_system_score_codex":0.00039620543,"about_ca_system_score_gemma":0.000766291,"threshold_uncertainty_score":0.021318793},"labels":[],"label_agreement":null},{"id":"W2139716817","doi":"10.1128/jcm.42.2.800-806.2004","title":"Multicenter Evaluation of the VERSANT Hepatitis B Virus DNA 3.0 Assay","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"World Health Organization","keywords":"BDNA test; Hepatitis B virus; Virology; Biology; DNA; Detection limit; Molecular biology; Virus; Hepatitis C virus; Chemistry; Chromatography; Genetics","score_opus":0.08928114484788327,"score_gpt":0.41379939063538634,"score_spread":0.3245182457875031,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139716817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8960816,0.007841594,0.06750933,0.00064000976,0.00034383434,0.0030646862,0.0077031837,0.0021528876,0.014662865],"genre_scores_gemma":[0.91829437,0.0010415986,0.06015207,0.00053827115,0.00013677649,0.0018700805,0.011983549,0.0003248335,0.0056584636],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9865323,0.006766532,0.000527307,0.0019746462,0.0037892966,0.00040991648],"domain_scores_gemma":[0.9893973,0.0018287194,0.0022307148,0.0010862573,0.0046367934,0.00082027697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.020401843,0.00124125,0.00064295443,0.0011470414,0.00049799826,0.0012687015,0.0011875513,0.0010461535,0.0015711839],"category_scores_gemma":[0.009574332,0.00050106796,0.0006342113,0.0008654316,0.0006858897,0.00052362616,0.0013401832,0.0008820267,0.0010370777],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.031226225,0.0035045466,0.4107324,0.0014357523,0.0012270918,0.00060058554,0.0018844676,0.0046349084,0.27108827,0.0042246985,0.012491002,0.25695005],"study_design_scores_gemma":[0.004311197,0.069465175,0.58728933,0.0005516062,0.0013792311,0.005151621,0.00046427085,0.019015595,0.20375776,0.00069625594,0.10762813,0.00028987142],"about_ca_topic_score_codex":0.0014501592,"about_ca_topic_score_gemma":0.0015866357,"teacher_disagreement_score":0.020401843,"about_ca_system_score_codex":0.00084593677,"about_ca_system_score_gemma":0.0015094897,"threshold_uncertainty_score":0.10789657},"labels":[],"label_agreement":null},{"id":"W2139832617","doi":"10.1128/jcm.42.6.2618-2622.2004","title":"Rapid and Specific Detection of <i>Escherichia coli</i> Clonal Group A by Gene-Specific PCR","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Bayer Canada; National Institutes of Health; Minnesota Department of Health; U.S. Department of Veterans Affairs; U.S. Department of Agriculture; Office of Research and Development; U.S. Environmental Protection Agency","keywords":"Biology; Escherichia coli; Housekeeping gene; Polymerase chain reaction; RAPD; Gene; Molecular biology; Microbiology; Genetics; Gene expression; Population; Medicine","score_opus":0.020610844476161974,"score_gpt":0.27808397115823624,"score_spread":0.2574731266820743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139832617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6071016,0.0023500908,0.38137788,0.0002771476,0.00013329556,0.00075851183,0.0017293938,0.0015125966,0.00475939],"genre_scores_gemma":[0.59926057,0.0016197145,0.39260596,0.0003706222,0.00008345886,0.00061432045,0.0026516493,0.00013688105,0.0026568815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900985,0.00021700635,0.00008035187,0.00034651367,0.00022614683,0.00012009423],"domain_scores_gemma":[0.99849164,0.00055416994,0.00029659327,0.00012741947,0.00043273292,0.0000973722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006744983,0.00062276,0.00050480437,0.00089294865,0.000143781,0.00051118433,0.00048869493,0.0006070064,0.00060104026],"category_scores_gemma":[0.0020055014,0.00035668985,0.0003082649,0.0003503372,0.00040467724,0.00033138413,0.00030428357,0.0007036666,0.0008155805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006069351,0.000028760585,0.0014527106,0.000055009627,0.0000064608553,0.00004383705,0.00003613511,0.00010896717,0.99118537,0.000108347595,0.00011444541,0.006799196],"study_design_scores_gemma":[0.00003402201,0.0006363491,0.012179076,0.00003324654,0.00006888502,0.0012402586,0.000083833824,0.0040525836,0.9755028,0.00023411849,0.0059063802,0.000028351704],"about_ca_topic_score_codex":0.00033278632,"about_ca_topic_score_gemma":0.000719132,"teacher_disagreement_score":0.00089294865,"about_ca_system_score_codex":0.00018592681,"about_ca_system_score_gemma":0.00025057897,"threshold_uncertainty_score":0.0035671592},"labels":[],"label_agreement":null},{"id":"W2139941874","doi":"10.1128/jcm.01214-06","title":"Differentiation of Mycobacterial Species by <i>hsp65</i> Duplex PCR Followed by Duplex-PCR-Based Restriction Analysis and Direct Sequencing","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Biology; Amplicon; Duplex (building); Subspecies; Polymerase chain reaction; Microbiology; Mycobacterium; Genetics; DNA; Gene; Bacteria","score_opus":0.029805665475969398,"score_gpt":0.32098046904578226,"score_spread":0.29117480356981285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139941874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7207948,0.004053527,0.27067828,0.00015992687,0.00017743769,0.00016192906,0.00079435424,0.00082117354,0.0023584638],"genre_scores_gemma":[0.72436154,0.0020651368,0.2680651,0.0001905421,0.00006524113,0.00016675706,0.001673656,0.00009401553,0.0033180292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99962604,0.000063944266,0.000054774293,0.00014146544,0.00007053007,0.000043109067],"domain_scores_gemma":[0.99941075,0.00021648705,0.00011395474,0.00007026858,0.0001299426,0.00005859005],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003868297,0.00041310652,0.00040409472,0.0004931481,0.00019110048,0.0004298823,0.00021331629,0.0003573847,0.0011750255],"category_scores_gemma":[0.0009266978,0.00025778415,0.00023528922,0.00015455308,0.00021568584,0.00039040452,0.00025080654,0.00052108715,0.0011388834],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006289905,0.000020154059,0.0015146158,0.000094618445,0.00000549577,0.000041229287,0.000048955244,0.000029583187,0.9895403,0.00007890114,0.00005999655,0.008503298],"study_design_scores_gemma":[0.000010666168,0.00033165672,0.009001211,0.000021497526,0.000043645123,0.0014800532,0.00010072042,0.0014978837,0.9829328,0.00016806992,0.0043949992,0.00001688384],"about_ca_topic_score_codex":0.00018158286,"about_ca_topic_score_gemma":0.0005904884,"teacher_disagreement_score":0.0011750255,"about_ca_system_score_codex":0.00012320199,"about_ca_system_score_gemma":0.00014673962,"threshold_uncertainty_score":0.003930807},"labels":[],"label_agreement":null},{"id":"W2139990552","doi":"10.1128/jcm.01907-06","title":"<i>Mucor circinelloides</i> Was Identified by Molecular Methods as a Cause of Primary Cutaneous Zygomycosis","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Zygomycosis; Mucor circinelloides; Mucormycosis; Mucor; Mucorales; Mycosis; Phycomycetes; Microbiology; Medicine; Biology; Pathology; Immunology; Amphotericin B; Antifungal; Aspergillus; Inoculation","score_opus":0.03397129101957202,"score_gpt":0.4041329529072851,"score_spread":0.3701616618877131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139990552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98982763,0.0020811006,0.0017117901,0.00065124704,0.00008693394,0.000063585976,0.00014190905,0.000092067196,0.0053437077],"genre_scores_gemma":[0.99776924,0.00062044064,0.00086603814,0.00012568866,0.00006644027,0.0000062223453,0.000069669455,0.00000800211,0.00046820944],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997036,0.000029859679,0.00003035166,0.000077586585,0.00005578746,0.00010276699],"domain_scores_gemma":[0.99936324,0.00014783691,0.00024874226,0.00004080007,0.0000577227,0.00014160355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018049759,0.0006707982,0.0004355614,0.0007956488,0.00053459604,0.00079687196,0.00036342267,0.0013752884,0.0013113169],"category_scores_gemma":[0.0011983167,0.00027870666,0.0002685622,0.00044357203,0.0006849601,0.00036696892,0.000319025,0.0008168942,0.00061183196],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021763692,0.00009319227,0.04863118,0.00025152843,0.000022625558,0.8006418,0.0005188271,0.00015817865,0.13588826,0.00031227185,0.00079004746,0.012474506],"study_design_scores_gemma":[0.000019261655,0.00042913854,0.063222185,0.0000678898,0.000062043284,0.9077889,0.00048336273,0.00048400642,0.023700062,0.00011829288,0.0035991299,0.000025712608],"about_ca_topic_score_codex":0.0027932357,"about_ca_topic_score_gemma":0.001485523,"teacher_disagreement_score":0.0027932357,"about_ca_system_score_codex":0.0004060734,"about_ca_system_score_gemma":0.00022185913,"threshold_uncertainty_score":0.005553961},"labels":[],"label_agreement":null},{"id":"W2140191175","doi":"10.1128/jcm.00860-06","title":"Optimal Surveillance Culture Sites for Detection of Methicillin-Resistant <i>Staphylococcus aureus</i> in Newborns","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Markham Stouffville Hospital","funders":"","keywords":"Staphylococcus aureus; Microbiology; Methicillin-resistant Staphylococcus aureus; Micrococcaceae; Staphylococcal infections; Medicine; Biology; Virology; Bacteria; Genetics","score_opus":0.03233207642601901,"score_gpt":0.35314966545146487,"score_spread":0.3208175890254459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140191175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99410987,0.002150721,0.0028217928,0.00012897878,0.000023689561,0.000026825312,0.00009004359,0.00008687117,0.00056119566],"genre_scores_gemma":[0.9931365,0.0005354881,0.006091164,0.000059759044,0.0000143958205,0.00001698479,0.000073892435,0.000013652923,0.000057992143],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989844,0.0003124532,0.00017014828,0.00012992977,0.00028615058,0.000116901065],"domain_scores_gemma":[0.9980102,0.0007314229,0.00062975433,0.00009165357,0.00030913446,0.00022789014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010400653,0.000515153,0.00051023095,0.0010034178,0.00033838712,0.0007471196,0.0005133408,0.00077643024,0.0003902129],"category_scores_gemma":[0.00554463,0.00042484206,0.00022732692,0.0003473081,0.00035059132,0.0005943394,0.00043456152,0.00047704033,0.00020768776],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010552454,0.00015901981,0.81483406,0.00036216652,0.000031096184,0.007843041,0.0007973126,0.0007905565,0.123715386,0.00013971316,0.00058743876,0.04968498],"study_design_scores_gemma":[0.00008956495,0.003283264,0.58871555,0.0004291183,0.0002329323,0.059407968,0.0031635847,0.0058865314,0.33577815,0.00031965424,0.002589191,0.00010446617],"about_ca_topic_score_codex":0.001140274,"about_ca_topic_score_gemma":0.0011823087,"teacher_disagreement_score":0.001140274,"about_ca_system_score_codex":0.00039530903,"about_ca_system_score_gemma":0.0004385411,"threshold_uncertainty_score":0.0055004954},"labels":[],"label_agreement":null},{"id":"W2140217304","doi":"10.1128/jcm.42.9.4275-4283.2004","title":"Uses of <i>Staphylococcus aureus</i> GeneChips in Genotyping and Genetic Composition Analysis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Ribotyping; Pulsed-field gel electrophoresis; Biology; Genotyping; Multilocus sequence typing; Typing; Staphylococcus aureus; Genetics; Gene chip analysis; Microbiology; Genotype; Gene; DNA microarray; Bacteria","score_opus":0.03307493235547512,"score_gpt":0.35315453704402877,"score_spread":0.3200796046885537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140217304","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7109542,0.0017167678,0.27656826,0.00036230448,0.00011640751,0.00020543886,0.0055325087,0.0010876274,0.0034564727],"genre_scores_gemma":[0.71175903,0.0012492955,0.2789927,0.00039889346,0.000077408644,0.00036988303,0.0057492014,0.00012469427,0.0012790156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838126,0.0006362346,0.00010119431,0.00046028197,0.0002850591,0.00013596239],"domain_scores_gemma":[0.9979988,0.0010039032,0.0004123377,0.00030921554,0.00017788669,0.00009781664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010881796,0.00048548172,0.000574275,0.00082278455,0.00018946288,0.0008773006,0.00045321917,0.0005853742,0.000495028],"category_scores_gemma":[0.001675699,0.0003091546,0.0004214395,0.0008431214,0.00036187802,0.00026265718,0.00044748452,0.00046184642,0.00042430175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014078328,0.00005260877,0.0066355546,0.00005940498,0.00003984578,0.00003871108,0.000035979025,0.0007050067,0.98090816,0.00019744165,0.00013060667,0.011055856],"study_design_scores_gemma":[0.000023247994,0.0006519126,0.10826642,0.00003744756,0.00020180522,0.0010728057,0.00012403466,0.017239232,0.86374736,0.0010514646,0.0075018867,0.00008235883],"about_ca_topic_score_codex":0.0005243189,"about_ca_topic_score_gemma":0.0010095182,"teacher_disagreement_score":0.0010881796,"about_ca_system_score_codex":0.00027721256,"about_ca_system_score_gemma":0.00025423226,"threshold_uncertainty_score":0.0057549477},"labels":[],"label_agreement":null},{"id":"W2140227711","doi":"10.1128/jcm.00685-10","title":"Comparison of the RealTime HIV-1, COBAS TaqMan 48 v1.0, Easy Q v1.2, and Versant v3.0 assays for Determination of HIV-1 Viral Loads in a Cohort of Canadian Patients with Diverse HIV Subtype Infections","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; McGill University; Alberta Health Services","funders":"Calgary Laboratory Services; Abbott Canada; Abbott Laboratories","keywords":"BDNA test; Viral load; Human immunodeficiency virus (HIV); Virology; TaqMan; Medicine; Genotype; Internal medicine; Biology; Real-time polymerase chain reaction; Genetics","score_opus":0.02622054471907391,"score_gpt":0.33545277541944035,"score_spread":0.30923223070036643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140227711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938028,0.0014136697,0.0010379775,0.00011383445,0.000029504326,0.000109249086,0.0011782586,0.000065030814,0.0022496693],"genre_scores_gemma":[0.9942304,0.00053615595,0.002374471,0.00014127506,0.00001769275,0.00006143691,0.0016885698,0.000018481325,0.00093160785],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99712425,0.00038785895,0.00012456944,0.00043216336,0.0016312966,0.00029979795],"domain_scores_gemma":[0.99738103,0.0007953292,0.00032694687,0.00013760626,0.0009065555,0.00045245155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026031444,0.00087541935,0.00055083947,0.00096557464,0.0009343614,0.0010924694,0.0012428854,0.0006002219,0.0007119655],"category_scores_gemma":[0.005557802,0.00047913438,0.00039644574,0.0011108759,0.00053290115,0.0003277258,0.00043028567,0.00070928363,0.00024810113],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0052540256,0.00035317635,0.93887615,0.00017464215,0.00046766893,0.00023242433,0.0010514777,0.0011918661,0.010679963,0.00024865652,0.0017572225,0.039712794],"study_design_scores_gemma":[0.00011938714,0.0012947655,0.99059206,0.000029650437,0.0001897569,0.00048772126,0.0003091011,0.0031885237,0.0021699904,0.000044854332,0.0015360638,0.000038037255],"about_ca_topic_score_codex":0.52301884,"about_ca_topic_score_gemma":0.72273296,"teacher_disagreement_score":0.47698116,"about_ca_system_score_codex":0.0040034275,"about_ca_system_score_gemma":0.0044135335,"threshold_uncertainty_score":0.9595804},"labels":[],"label_agreement":null},{"id":"W2140294211","doi":"10.1128/jcm.42.5.1947-1955.2004","title":"<i>mecA</i> Locus Diversity in Methicillin-Resistant <i>Staphylococcus aureus</i> Isolates in Brisbane, Australia, and the Development of a Novel Diagnostic Procedure for the Western Samoan Phage Pattern Clone","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Australian Government; Canadian Centre for Applied Research in Cancer Control","keywords":"Multilocus sequence typing; Methicillin-resistant Staphylococcus aureus; SCCmec; Genotyping; Biology; Staphylococcus aureus; Staphylococcal infections; Typing; Microbiology; Genetics; Virology; Genotype; Gene","score_opus":0.07180350680232041,"score_gpt":0.36239632753365125,"score_spread":0.29059282073133086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140294211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99926347,0.00016074785,0.00015519044,0.000022800174,0.0000011733049,0.000010585173,0.00007240299,0.0000015767057,0.00031201812],"genre_scores_gemma":[0.9981852,0.0001821628,0.00084758014,0.000029119901,0.0000026309833,0.000019600993,0.00022853957,0.0000023442667,0.0005027647],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995097,0.00011448421,0.000041594685,0.00012069478,0.0001568917,0.000056659046],"domain_scores_gemma":[0.99958044,0.00007055753,0.000154551,0.00002582831,0.000100066085,0.00006847846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003602425,0.00018990092,0.00015666534,0.00094418856,0.00045238034,0.00039558407,0.0002507697,0.00028306336,0.00053443835],"category_scores_gemma":[0.0008054318,0.00025667757,0.00021982905,0.0006035405,0.00035336075,0.00024041033,0.0003844381,0.00026970124,0.0001616518],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031712,0.00015518354,0.5879632,0.00019840196,0.00007307207,0.0008838804,0.004680287,0.00046013322,0.38607228,0.00014819359,0.00023464375,0.018813536],"study_design_scores_gemma":[0.0000048750044,0.00019496141,0.9925355,0.000019949563,0.000017827299,0.00082806067,0.0005353083,0.00037009845,0.0048131985,0.000020096499,0.00065196335,0.000008198456],"about_ca_topic_score_codex":0.036950387,"about_ca_topic_score_gemma":0.06192573,"teacher_disagreement_score":0.036950387,"about_ca_system_score_codex":0.0005775732,"about_ca_system_score_gemma":0.00049158663,"threshold_uncertainty_score":0.07347059},"labels":[],"label_agreement":null},{"id":"W2140299964","doi":"10.1128/jcm.02347-10","title":"Rapid Genoserotyping Tool for Classification of Salmonella Serovars","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Public Health Agency of Canada; Alere","keywords":"Serotype; Salmonella; Salmonella enterica; Biology; Microbiology; Repeatability; Antigen; Subspecies; Virology; Genetics; Bacteria; Mathematics; Statistics","score_opus":0.21625813908635816,"score_gpt":0.34892602280261703,"score_spread":0.13266788371625887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140299964","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2375546,0.0027290895,0.7100877,0.0004478511,0.00031607624,0.00064561696,0.009719428,0.03352875,0.0049709324],"genre_scores_gemma":[0.19577955,0.00076473574,0.7887114,0.0003440512,0.00007485514,0.00071562995,0.009197344,0.0007438231,0.0036686494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834895,0.00037581075,0.00014321103,0.00044190168,0.00054222654,0.00014798803],"domain_scores_gemma":[0.9979406,0.00080808747,0.000412577,0.00025530104,0.00042950342,0.0001539356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017989486,0.0013106613,0.0010234138,0.00287427,0.0003416385,0.0008563759,0.0008204174,0.00074495724,0.0049644257],"category_scores_gemma":[0.0032039965,0.0004887527,0.0006977358,0.0011644834,0.00038075433,0.00089941296,0.0013096774,0.0009778854,0.0034465839],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001255953,0.00018949326,0.026512044,0.0004965148,0.00013675907,0.00034356315,0.00029667313,0.0023144349,0.70072824,0.0008314986,0.007324518,0.2595704],"study_design_scores_gemma":[0.00020551292,0.0018399418,0.09740948,0.00020435182,0.00025731776,0.0030234973,0.00035713913,0.09755243,0.7291068,0.0025065576,0.06723232,0.0003047282],"about_ca_topic_score_codex":0.0007243686,"about_ca_topic_score_gemma":0.0011618005,"teacher_disagreement_score":0.0049644257,"about_ca_system_score_codex":0.0002651868,"about_ca_system_score_gemma":0.0002719445,"threshold_uncertainty_score":0.016607583},"labels":[],"label_agreement":null},{"id":"W2140336790","doi":"10.1128/jcm.01135-11","title":"Evaluation of Luminex xTAG Fungal Analyte-Specific Reagents for Rapid Identification of Clinically Relevant Fungi","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Candida parapsilosis; Candida tropicalis; Microbiology; Candida krusei; Biology; Candida glabrata; Candida albicans; Aspergillus fumigatus; Aspergillus","score_opus":0.23517269876739974,"score_gpt":0.44053602445298673,"score_spread":0.205363325685587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140336790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9488205,0.0059231753,0.040701646,0.00032315974,0.00019703052,0.0010314642,0.0005418001,0.00042909116,0.0020321663],"genre_scores_gemma":[0.9118493,0.0029647823,0.07932195,0.000396048,0.000092364884,0.00090815086,0.002347146,0.00004890981,0.002071292],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99438596,0.002460828,0.00043045118,0.00061524985,0.00178255,0.00032491915],"domain_scores_gemma":[0.9981178,0.00096459483,0.00025341648,0.00013097156,0.00041941923,0.00011375122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008504091,0.0012745326,0.0006737364,0.0010124819,0.00031037576,0.0014145721,0.0010432185,0.0008980095,0.0006380983],"category_scores_gemma":[0.0039199553,0.00042081546,0.0004934728,0.00057494483,0.00048191173,0.00052842725,0.0005328001,0.00072790403,0.00035745488],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005594937,0.001989122,0.017453676,0.00065975095,0.00017174594,0.00025309384,0.00029288002,0.0038908627,0.9206376,0.0006553207,0.00077975006,0.04762115],"study_design_scores_gemma":[0.00038324128,0.011961024,0.016653063,0.00008627095,0.00019263342,0.0013567616,0.00009083422,0.026268763,0.9370539,0.0001464958,0.0057616276,0.000045359957],"about_ca_topic_score_codex":0.0006238049,"about_ca_topic_score_gemma":0.0004965322,"teacher_disagreement_score":0.008504091,"about_ca_system_score_codex":0.00060244306,"about_ca_system_score_gemma":0.00060802,"threshold_uncertainty_score":0.044974506},"labels":[],"label_agreement":null},{"id":"W2140384607","doi":"10.1128/jcm.01253-07","title":"Reductions in Workload and Reporting Time by Use of Methicillin-Resistant <i>Staphylococcus aureus</i> Screening with MRSA <i>Select</i> Medium Compared to Mannitol-Salt Medium Supplemented with Oxacillin","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health; St. Boniface Hospital","funders":"","keywords":"Staphylococcus aureus; Medicine; Methicillin-resistant Staphylococcus aureus; Turnaround time; Mannitol; Staphylococcal infections; Micrococcaceae; Microbiology; Meticillin; Workload; Infection control; Antibacterial agent; Surgery; Biology; Antibiotics; Bacteria","score_opus":0.07851874426080939,"score_gpt":0.35695264160893725,"score_spread":0.27843389734812785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140384607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985708,0.00015474574,0.0003532328,0.000099213,0.000015270947,0.0000244226,0.000051489045,0.000013544091,0.00071730284],"genre_scores_gemma":[0.9987198,0.00008419668,0.0007458662,0.000048135644,0.00002184455,0.000034799796,0.00009890291,0.0000068276654,0.00023967109],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958698,0.0024213472,0.00035184494,0.00023694198,0.00077967066,0.00034036514],"domain_scores_gemma":[0.98982555,0.0040425984,0.0036810213,0.0008004014,0.0009953921,0.00065501715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021319746,0.00029401714,0.00028558,0.00047771676,0.0002649442,0.0005772111,0.0005372702,0.00027498716,0.0010013311],"category_scores_gemma":[0.016580561,0.00015562595,0.00037648337,0.00037694036,0.00027091661,0.000403546,0.0005730038,0.00029574274,0.00025102065],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057685394,0.0016861133,0.8245797,0.0002204525,0.00014684755,0.00038657588,0.0021144766,0.0008985669,0.013952119,0.00015044956,0.0012060478,0.14889015],"study_design_scores_gemma":[0.00008914452,0.013845253,0.96538,0.000070903436,0.00015402454,0.00098794,0.0013398594,0.0016714695,0.012554938,0.000055187225,0.003810723,0.000040494106],"about_ca_topic_score_codex":0.002292125,"about_ca_topic_score_gemma":0.0021166126,"teacher_disagreement_score":0.002292125,"about_ca_system_score_codex":0.0004649495,"about_ca_system_score_gemma":0.0007595793,"threshold_uncertainty_score":0.011275053},"labels":[],"label_agreement":null},{"id":"W2140400415","doi":"10.1128/jcm.01509-06","title":"Verification of the IDI-MRSA Assay for Detecting Methicillin-Resistant <i>Staphylococcus aureus</i> in Diverse Specimen Types in a Core Clinical Laboratory Setting","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"North York General Hospital; University Health Network; University of Toronto","funders":"","keywords":"Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Medicine; Clinical microbiology; Microbiology; Micrococcaceae; Staphylococcal infections; Biology; Antibacterial agent; Antibiotics; Bacteria","score_opus":0.049387945451504774,"score_gpt":0.35930529473613404,"score_spread":0.3099173492846293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140400415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.979368,0.0007137569,0.014489407,0.00015418744,0.00009533801,0.00041128125,0.00096793706,0.00017042857,0.003629631],"genre_scores_gemma":[0.9727303,0.00023437351,0.024987977,0.00016388722,0.000019507717,0.00011507825,0.0010273769,0.000025127718,0.0006962806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99480766,0.0013404093,0.00088981853,0.000874647,0.0017591895,0.00032839153],"domain_scores_gemma":[0.99371874,0.0019172665,0.001148077,0.000716246,0.0021590572,0.0003406095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004596592,0.000623763,0.00068119675,0.001025594,0.00040727484,0.0006515206,0.0005700396,0.0006676392,0.0010673571],"category_scores_gemma":[0.009043317,0.00030356034,0.00044861526,0.0006727368,0.00043259416,0.00034579178,0.00052042597,0.0005624898,0.0009269658],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019919206,0.0004945464,0.43484995,0.00042251078,0.00011196959,0.00068562024,0.0007188936,0.00029104974,0.5350334,0.00019482296,0.00061881053,0.024586407],"study_design_scores_gemma":[0.00014177078,0.008216994,0.40705016,0.00011445791,0.0003111208,0.015102005,0.0005401852,0.0031612848,0.5608511,0.000070813476,0.0043731304,0.000067088724],"about_ca_topic_score_codex":0.0015043463,"about_ca_topic_score_gemma":0.0021884826,"teacher_disagreement_score":0.004596592,"about_ca_system_score_codex":0.00024220027,"about_ca_system_score_gemma":0.00055445585,"threshold_uncertainty_score":0.024309397},"labels":[],"label_agreement":null},{"id":"W2140402634","doi":"10.1128/jcm.41.6.2547-2553.2003","title":"Genetic Biodiversity of <i>Mycobacterium tuberculosis</i> Complex Strains from Patients with Pulmonary Tuberculosis in Cameroon","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie","keywords":"Tuberculosis; Mycobacterium tuberculosis; Mycobacterium tuberculosis complex; Genotype; Biology; Virology; Bacilli; Mycobacterium; Microbiology; Medicine; Bacteria; Genetics; Gene; Pathology","score_opus":0.0451135800074454,"score_gpt":0.3296097519909866,"score_spread":0.28449617198354116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140402634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961,0.00017512657,0.000055158653,0.000030023091,0.0000024747446,0.0000049764512,0.00006542529,0.0000014004206,0.000055390115],"genre_scores_gemma":[0.9997676,0.000054725708,0.0000723272,0.000018453651,0.000003596625,0.0000027927376,0.00006102882,8.408959e-7,0.000018645429],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996718,0.000107726075,0.000031931017,0.0000771082,0.00002778806,0.00008360491],"domain_scores_gemma":[0.99944013,0.00016795016,0.00019956085,0.00002860223,0.00005658318,0.0001071766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000458581,0.00055015786,0.00025981932,0.0011359255,0.00054652285,0.00057974766,0.0001862137,0.000328387,0.0011655005],"category_scores_gemma":[0.0017941146,0.0002450604,0.00020284668,0.0007095886,0.0005032411,0.00033123346,0.00032687676,0.00025063322,0.00012390771],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029146014,0.000024662939,0.9866241,0.00002947874,0.000029018114,0.001047971,0.00062876043,0.0001170873,0.0062737265,0.00004379804,0.00014842073,0.004741512],"study_design_scores_gemma":[0.000032544027,0.00027349062,0.9926473,0.000033808792,0.000038175906,0.0035658393,0.0009957023,0.0006602682,0.001130774,0.000035179626,0.0005757306,0.000011253008],"about_ca_topic_score_codex":0.012615917,"about_ca_topic_score_gemma":0.006813354,"teacher_disagreement_score":0.012615917,"about_ca_system_score_codex":0.0006140437,"about_ca_system_score_gemma":0.00023065884,"threshold_uncertainty_score":0.025084972},"labels":[],"label_agreement":null},{"id":"W2140691349","doi":"10.1128/jcm.00203-07","title":"PCR-Restriction Fragment Length Polymorphism Analysis of <i>Campylobacter jejuni</i> Genes Involved in Lipooligosaccharide Biosynthesis Identifies Putative Molecular Markers for Guillain-Barre Syndrome","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Campylobacter jejuni; Molecular mimicry; Biology; Gene; Restriction fragment length polymorphism; Ganglioside; Campylobacter; Genetics; Guillain-Barre syndrome; Antibody; Molecular biology; Microbiology; Polymerase chain reaction; Immunology; Bacteria","score_opus":0.03707792438263025,"score_gpt":0.31579734770829326,"score_spread":0.278719423325663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140691349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99193454,0.00041275533,0.004340956,0.00015332115,0.000031229334,0.0001271425,0.0015251462,0.00005109041,0.0014238354],"genre_scores_gemma":[0.982002,0.00035137637,0.010965355,0.00017373486,0.000015083906,0.00010363958,0.00441654,0.000030560048,0.001941561],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998006,0.000025015686,0.000016608636,0.000079291916,0.000026921532,0.000051528274],"domain_scores_gemma":[0.99958557,0.0001472391,0.000115090974,0.000014458753,0.00006982784,0.000067811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001311548,0.00046509426,0.00020728141,0.0007068221,0.00013411582,0.00023265644,0.00021069332,0.00038489775,0.0018649563],"category_scores_gemma":[0.0004969169,0.0002010264,0.00032579844,0.00033466474,0.0003265553,0.00011327628,0.0001347817,0.00041017405,0.0005040901],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026691234,0.000045099783,0.0052773175,0.00004148998,0.000010097365,0.00026814715,0.000045169167,0.000048748403,0.99195564,0.000058310492,0.00006360792,0.0019194701],"study_design_scores_gemma":[0.000094024625,0.0011877294,0.28103277,0.00009050801,0.0001536636,0.005111938,0.00037698183,0.0017676724,0.7059415,0.00025051172,0.0039592967,0.000033467502],"about_ca_topic_score_codex":0.0022658296,"about_ca_topic_score_gemma":0.002600123,"teacher_disagreement_score":0.0022658296,"about_ca_system_score_codex":0.00028594208,"about_ca_system_score_gemma":0.00020310757,"threshold_uncertainty_score":0.0062389374},"labels":[],"label_agreement":null},{"id":"W2140804203","doi":"10.1128/jcm.01614-14","title":"Comparison of Flocked and Aptima Swabs and Two Specimen Transport Media in the Aptima Combo 2 Assay","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Health Sciences; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Medicine; Virology; Biology; Microbiology","score_opus":0.0816664715354182,"score_gpt":0.4384225386697466,"score_spread":0.3567560671343284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140804203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972574,0.00051733566,0.0011710875,0.000037728216,0.00006239278,0.00008737582,0.00021206171,0.000023304228,0.000631218],"genre_scores_gemma":[0.99234325,0.00034701376,0.005665687,0.00008946043,0.00004437237,0.000091064336,0.0007665319,0.00001581797,0.000636818],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99345654,0.0022638517,0.0004902402,0.00084019045,0.002466923,0.00048222],"domain_scores_gemma":[0.99146503,0.0049103615,0.0011671827,0.00047165548,0.001485759,0.00050000753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0050223507,0.0010948187,0.0009470585,0.0018560819,0.00030369204,0.0012499195,0.0007447039,0.0010651945,0.00075201335],"category_scores_gemma":[0.013714958,0.0012166521,0.00061887916,0.0010244659,0.0007698811,0.0008836721,0.00073395326,0.0006593648,0.00043117197],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018940277,0.0018583001,0.70213807,0.00052424736,0.00073410745,0.0005904255,0.0015765511,0.00067852554,0.23798658,0.0001752071,0.0004878707,0.034309793],"study_design_scores_gemma":[0.00031191413,0.015790075,0.8369955,0.000097646036,0.0007423869,0.0025154918,0.0007652176,0.006665397,0.13455711,0.00007810558,0.0013964444,0.000084776664],"about_ca_topic_score_codex":0.001445647,"about_ca_topic_score_gemma":0.0025158573,"teacher_disagreement_score":0.0050223507,"about_ca_system_score_codex":0.00028487432,"about_ca_system_score_gemma":0.00028366395,"threshold_uncertainty_score":0.026561022},"labels":[],"label_agreement":null},{"id":"W2140982902","doi":"10.1128/jcm.01446-08","title":"Detection of Mumps Virus RNA by Real-Time One-Step Reverse Transcriptase PCR Using the LightCycler Platform","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Dalhousie University; Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Reverse transcriptase; Mumps virus; Virology; Real-time polymerase chain reaction; Biology; Reverse transcription polymerase chain reaction; RNA; RNA-Directed DNA Polymerase; Virus; Messenger RNA; Genetics; Gene","score_opus":0.0893498265804851,"score_gpt":0.3557393615866849,"score_spread":0.2663895350061998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140982902","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20487314,0.0036328214,0.77374136,0.00036566085,0.0006576292,0.0034167662,0.0020773648,0.005076359,0.006158971],"genre_scores_gemma":[0.13112237,0.0020318953,0.84937245,0.00028313787,0.00015800574,0.005191485,0.0038103438,0.00050861103,0.007521743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970515,0.00080077926,0.0002784914,0.0007705067,0.0007859187,0.00031279874],"domain_scores_gemma":[0.9984664,0.00089210406,0.00013042438,0.00020182463,0.00023337008,0.00007580841],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026818386,0.002153287,0.0024060155,0.0016009643,0.000546805,0.0011477995,0.0016643126,0.0011244162,0.005098812],"category_scores_gemma":[0.0027026306,0.0015061063,0.0008209223,0.0007939731,0.0013276215,0.0008306666,0.0007925342,0.003291013,0.0033771873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001912452,0.00008250713,0.00026320905,0.000302041,0.000011555459,0.00004114146,0.00008292649,0.00018706781,0.9924682,0.00032800253,0.00020569182,0.0058364607],"study_design_scores_gemma":[0.00014843485,0.0010221942,0.0012317258,0.00006320531,0.000058784295,0.00023035271,0.00005469416,0.0067529357,0.97526336,0.0006003915,0.014510883,0.000062883584],"about_ca_topic_score_codex":0.0003486197,"about_ca_topic_score_gemma":0.00081976916,"teacher_disagreement_score":0.005098812,"about_ca_system_score_codex":0.00055384345,"about_ca_system_score_gemma":0.000975679,"threshold_uncertainty_score":0.01705724},"labels":[],"label_agreement":null},{"id":"W2141037035","doi":"10.1128/jcm.44.5.1851-1852.2006","title":"Emergence of <i>Cryptococcus gattii</i> in a Novel Environment Provides Clues to Its Incubation Period","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control","keywords":"Incubation period; Cryptococcus gattii; Incubation; Cryptococcus; Period (music); Biology; Veterinary medicine; Microbiology; Medicine; Biochemistry","score_opus":0.04671342161236468,"score_gpt":0.3648245439724991,"score_spread":0.3181111223601344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141037035","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981463,0.0001985026,0.0001629947,0.000049223967,0.0000028912325,0.000010813813,0.00031718536,0.0000047319018,0.0011073147],"genre_scores_gemma":[0.9987967,0.00017623829,0.00046783598,0.00003071539,0.0000029942369,0.0000026417874,0.00029807238,0.0000019994711,0.00022282475],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99975556,0.000018657995,0.000010836309,0.00004915609,0.00005070714,0.000115146446],"domain_scores_gemma":[0.9995627,0.00005109937,0.00013662477,0.000016893793,0.00011254471,0.000120062636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001558493,0.00023498364,0.00019474053,0.0007293108,0.0010110813,0.0009806163,0.00020552693,0.00025218143,0.0007733971],"category_scores_gemma":[0.0005667677,0.00017308637,0.00011469973,0.0008106341,0.00048460005,0.0002500718,0.00033082606,0.00037853487,0.00018971832],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021083237,0.000041887477,0.96411204,0.00004747202,0.000015562631,0.0015799917,0.00082592317,0.00012146069,0.02404203,0.000074070056,0.0003400832,0.008588681],"study_design_scores_gemma":[0.0000024456626,0.00006556443,0.9942731,0.000017919807,0.000011819106,0.0012756013,0.0016997859,0.00012510977,0.001667026,0.000024966059,0.00082919636,0.000007359016],"about_ca_topic_score_codex":0.31393525,"about_ca_topic_score_gemma":0.63085306,"teacher_disagreement_score":0.31393525,"about_ca_system_score_codex":0.0016915769,"about_ca_system_score_gemma":0.0011411824,"threshold_uncertainty_score":0.6242159},"labels":[],"label_agreement":null},{"id":"W2141083402","doi":"10.1128/jcm.01894-09","title":"<i>Mycobacterium tuberculosis</i> Spoligotypes in Monterrey, Mexico","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Health Canada","funders":"Conseil Régional de Guadeloupe","keywords":"rpoB; Clade; Mycobacterium tuberculosis; Tuberculosis; Biology; Restriction fragment length polymorphism; Multiple drug resistance; Genetics; Drug resistance; Polymerase chain reaction; Medicine; Gene; Phylogenetics","score_opus":0.04747433413284828,"score_gpt":0.40801269965635706,"score_spread":0.36053836552350876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141083402","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983851,0.00046977645,0.00007837451,0.000070119386,0.0000039495735,0.000009921105,0.0004312192,0.0000059281247,0.0005457129],"genre_scores_gemma":[0.9972945,0.000730935,0.00035023032,0.000039758743,0.000012789639,0.000023842658,0.0012861596,0.0000029074376,0.00025880476],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998553,0.000023316634,0.000012998954,0.00004611664,0.000029139372,0.000033198772],"domain_scores_gemma":[0.9997509,0.000029697396,0.00015215954,0.000011740614,0.000030546904,0.000024988238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033271432,0.0001537882,0.00015119223,0.0008556234,0.00038917307,0.0005120436,0.00017437898,0.0002327747,0.00050308375],"category_scores_gemma":[0.00042158092,0.00011015205,0.00014039093,0.0005048419,0.00022894326,0.00017517875,0.00027968545,0.00016561282,0.00005623594],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030328843,0.00005281472,0.975528,0.00009293392,0.000055643777,0.0003609491,0.00059656164,0.00019580465,0.010078017,0.00008051809,0.00047364848,0.0121817775],"study_design_scores_gemma":[0.0000061784317,0.000043580632,0.99802196,0.000017294657,0.000016341211,0.00012965193,0.000268996,0.00005873629,0.00031556553,0.0000070781575,0.0011119937,0.0000025886739],"about_ca_topic_score_codex":0.037025988,"about_ca_topic_score_gemma":0.045110054,"teacher_disagreement_score":0.037025988,"about_ca_system_score_codex":0.0007012649,"about_ca_system_score_gemma":0.00044176384,"threshold_uncertainty_score":0.073620975},"labels":[],"label_agreement":null},{"id":"W2141121101","doi":"10.1128/jcm.39.10.3638-3648.2001","title":"Necessity of Quality-Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous <i>Mycobacterium</i> Species","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":310,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Canada","funders":"","keywords":"16S ribosomal RNA; Biology; Sequence database; Database; Sequence analysis; Ribosomal RNA; Nontuberculous mycobacteria; Mycobacterium; Genetics; Identification (biology); Gene; Microbiology; Computational biology; Bacteria; Ecology","score_opus":0.20485048327610533,"score_gpt":0.46550559049561935,"score_spread":0.260655107219514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141121101","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7318189,0.025567101,0.20602402,0.0045364345,0.00082403683,0.0022624587,0.018779522,0.0034760477,0.006711462],"genre_scores_gemma":[0.4514742,0.005320665,0.5007583,0.0016915208,0.00027667274,0.00092061947,0.03787089,0.0006495089,0.0010376867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9669945,0.012366171,0.007884457,0.002716653,0.00911105,0.00092709454],"domain_scores_gemma":[0.92238307,0.029928897,0.010264844,0.01197739,0.0234285,0.0020173388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.028930688,0.0007393408,0.0016910568,0.0049140956,0.0011581095,0.00527932,0.0023888974,0.0016121484,0.0014777185],"category_scores_gemma":[0.05619612,0.000712949,0.0009093033,0.0052199624,0.00094087305,0.0037905697,0.0016205959,0.0010521314,0.0017087872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036567606,0.0011655346,0.12141814,0.0062790397,0.00047888077,0.0016001995,0.001888302,0.0057563963,0.46359804,0.0039098184,0.007125487,0.3831234],"study_design_scores_gemma":[0.00055413746,0.0026068778,0.17068554,0.0032785847,0.0011196836,0.008754862,0.004398272,0.043860976,0.62644875,0.00810972,0.1296759,0.00050676445],"about_ca_topic_score_codex":0.0024943964,"about_ca_topic_score_gemma":0.0029502248,"teacher_disagreement_score":0.028930688,"about_ca_system_score_codex":0.0009788619,"about_ca_system_score_gemma":0.0024947086,"threshold_uncertainty_score":0.15300196},"labels":[],"label_agreement":null},{"id":"W2141177835","doi":"10.1128/jcm.02389-10","title":"An International Collaboration To Standardize HIV-2 Viral Load Assays: Results from the 2009 ACHI <sub>E</sub> V <sub>2E</sub> Quality Control Study","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Medical Research Council; Universidade de Coimbra; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Università degli Studi di Milano; McGill University; University of Washington; Université Catholique de Louvain; Styrelsen för Internationellt Utvecklingssamarbete; National Science Foundation","keywords":"Viral load; Human immunodeficiency virus (HIV); Lentivirus; External quality assessment; Virology; Biology; Medicine; Viral disease; Pathology","score_opus":0.0566259152489469,"score_gpt":0.3822157002029345,"score_spread":0.3255897849539876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141177835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79237866,0.019864462,0.08920312,0.016068943,0.0013878065,0.0064415736,0.0124314595,0.0012135878,0.061010435],"genre_scores_gemma":[0.87009835,0.0030236116,0.09292867,0.0057764533,0.00044922816,0.0022745214,0.016169397,0.000655644,0.008624103],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9026,0.05504065,0.0063527697,0.0071181776,0.025879836,0.0030084667],"domain_scores_gemma":[0.85543674,0.033079896,0.015504402,0.023575468,0.06467158,0.0077318973],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.14695399,0.0009985818,0.00077588257,0.0017644084,0.0016482256,0.004261835,0.0017810237,0.0018229808,0.0020532892],"category_scores_gemma":[0.06287961,0.0005629832,0.0010112966,0.0021452368,0.0017130694,0.0011796717,0.004250894,0.0020479944,0.0009898584],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014413456,0.003865402,0.5112458,0.0013438582,0.0018774095,0.0004496635,0.0049360804,0.0032247617,0.04393311,0.0051767277,0.0302168,0.37931702],"study_design_scores_gemma":[0.004216868,0.012347739,0.73843336,0.0010086483,0.0016585104,0.0015329157,0.0025720973,0.0040865107,0.08224974,0.001866401,0.14976177,0.00026539178],"about_ca_topic_score_codex":0.0053127646,"about_ca_topic_score_gemma":0.005495278,"teacher_disagreement_score":0.14695399,"about_ca_system_score_codex":0.0023511448,"about_ca_system_score_gemma":0.0059794993,"threshold_uncertainty_score":0.77717626},"labels":[],"label_agreement":null},{"id":"W2141250602","doi":"10.1128/jcm.00844-09","title":"Use of the Normalized Absorbance Ratio as an Internal Standardization Approach To Minimize Measurement Error in Enzyme-Linked Immunosorbent Assays for Diagnosis of Human Papillomavirus Infection","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; National Cancer Institute; Ludwig Institute for Cancer Research","keywords":"Human papillomavirus; Absorbance; Virology; Standardization; Enzyme; Medicine; Biology; Chromatography; Chemistry; Computer science; Biochemistry; Internal medicine","score_opus":0.18111918633746352,"score_gpt":0.44511907555438646,"score_spread":0.26399988921692297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141250602","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08207152,0.0033199687,0.89688945,0.00031416546,0.0018526874,0.0031138605,0.0011355586,0.00396576,0.007337009],"genre_scores_gemma":[0.1151358,0.00074183237,0.8749059,0.00031267415,0.000141868,0.004373611,0.0011090724,0.0008439249,0.00243539],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9081913,0.042036574,0.008254976,0.015128517,0.025183136,0.0012054922],"domain_scores_gemma":[0.9576824,0.01518844,0.005477857,0.0090008015,0.012301914,0.00034856968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06464063,0.003999744,0.002862311,0.0064841886,0.0018535339,0.003366699,0.003948427,0.0025334528,0.0027387647],"category_scores_gemma":[0.06873202,0.0017328671,0.0029435838,0.008182858,0.002707416,0.0024397147,0.0026292447,0.0031643708,0.00213042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003622389,0.0027363629,0.1810089,0.0039522736,0.003728643,0.0008360315,0.0044418434,0.011119503,0.3438386,0.014591806,0.007367898,0.42275575],"study_design_scores_gemma":[0.0004944746,0.008750353,0.25583592,0.0009217559,0.0028061492,0.004184533,0.0015203636,0.09365982,0.5486718,0.015191788,0.06703414,0.0009289282],"about_ca_topic_score_codex":0.0019383924,"about_ca_topic_score_gemma":0.0038432484,"teacher_disagreement_score":0.06464063,"about_ca_system_score_codex":0.0017153216,"about_ca_system_score_gemma":0.0020387939,"threshold_uncertainty_score":0.34185642},"labels":[],"label_agreement":null},{"id":"W2141293158","doi":"10.1128/jcm.00543-07","title":"Identification of Medically Important <i>Candida</i> and Non- <i>Candida</i> Yeast Species by an Oligonucleotide Array","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Beef Cattle Research Council; National Science Council","keywords":"Yeast; Biology; Oligonucleotide; Internal transcribed spacer; Candida albicans; Ribosomal RNA; Specific identification; Polymerase chain reaction; Microbiology; genomic DNA; DNA; Digoxigenin; Gene; Genetics; In situ hybridization","score_opus":0.010119564640673259,"score_gpt":0.29904829528560056,"score_spread":0.2889287306449273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141293158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8524207,0.004368253,0.13375425,0.00030990987,0.00019188206,0.00034248753,0.0022303942,0.0009992267,0.0053829723],"genre_scores_gemma":[0.58835334,0.0037449724,0.39633134,0.0004907245,0.0001184923,0.00061479013,0.004296241,0.00010680149,0.0059433584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993876,0.00013707887,0.000055236593,0.00021520928,0.00014039264,0.00006449958],"domain_scores_gemma":[0.9997168,0.0000869867,0.000050605566,0.000021843261,0.000079179634,0.000044508015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047812174,0.000670248,0.000668336,0.00079424854,0.00018360399,0.00041360105,0.00026781685,0.0006852383,0.001535214],"category_scores_gemma":[0.0006912822,0.00034485696,0.00032030162,0.000495574,0.00018911365,0.00037479706,0.0003126328,0.00030997358,0.0011916868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006141621,0.000013719475,0.00061272905,0.000040942225,0.0000050881918,0.000013741315,0.000010044218,0.000043884862,0.9954188,0.000022712691,0.00003272028,0.0037241937],"study_design_scores_gemma":[0.000019185287,0.00074176106,0.011764389,0.000031554424,0.00009422621,0.0005750402,0.00007325905,0.0031060923,0.9791252,0.00017565639,0.0042666066,0.000027118933],"about_ca_topic_score_codex":0.00012898953,"about_ca_topic_score_gemma":0.0003264109,"teacher_disagreement_score":0.001535214,"about_ca_system_score_codex":0.00013969294,"about_ca_system_score_gemma":0.00018547388,"threshold_uncertainty_score":0.0051357746},"labels":[],"label_agreement":null},{"id":"W2141374001","doi":"10.1128/jcm.00248-12","title":"Wild-Type MIC Distributions and Epidemiological Cutoff Values for Amphotericin B, Flucytosine, and Itraconazole and Candida spp. as Determined by CLSI Broth Microdilution","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Flucytosine; Amphotericin B; Itraconazole; Broth microdilution; Candida parapsilosis; Candida glabrata; Candida krusei; Microbiology; Candida tropicalis; Biology; Candida albicans; Medicine; Veterinary medicine; Internal medicine; Antifungal; Minimum inhibitory concentration; Antibiotics","score_opus":0.04555728301403828,"score_gpt":0.39583623387550226,"score_spread":0.350278950861464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141374001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9846251,0.00063620106,0.008802047,0.00006167939,0.000022762233,0.00019083028,0.0036925531,0.00013569293,0.0018330255],"genre_scores_gemma":[0.9682836,0.0004447785,0.024586897,0.000057906636,0.000006101458,0.00024703803,0.0054667126,0.000049082944,0.00085783564],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988288,0.0001944572,0.0002477742,0.000249997,0.00035035258,0.0001286451],"domain_scores_gemma":[0.99908113,0.0001630402,0.00018582484,0.00016288477,0.00035538414,0.000051736322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091995194,0.0005705362,0.00042892256,0.0008492473,0.00015210842,0.00048673325,0.0004182499,0.00035492223,0.00080819795],"category_scores_gemma":[0.0019507934,0.00018251395,0.00036662555,0.00073937356,0.00033238207,0.00019979864,0.00022798721,0.00034727447,0.00036563567],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045015386,0.00019668223,0.05303453,0.00008712885,0.000041981504,0.00024348841,0.00026407742,0.0008764191,0.9320395,0.00035969817,0.00030849938,0.012097883],"study_design_scores_gemma":[0.000061242274,0.001747985,0.29097778,0.00005268214,0.00011209334,0.0031002737,0.000429869,0.005296432,0.6911656,0.00036782288,0.0066317027,0.000056538283],"about_ca_topic_score_codex":0.0054352474,"about_ca_topic_score_gemma":0.0044615148,"teacher_disagreement_score":0.0054352474,"about_ca_system_score_codex":0.00041139644,"about_ca_system_score_gemma":0.00036692346,"threshold_uncertainty_score":0.010807216},"labels":[],"label_agreement":null},{"id":"W2141570244","doi":"10.1128/jcm.44.4.1530-1535.2006","title":"Invasive <i>Haemophilus influenzae</i> in Manitoba, Canada, in the Postvaccination Era","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"National Institutes of Health; Public Health Agency of Canada; University of Manitoba","keywords":"Serotype; Multilocus sequence typing; Haemophilus influenzae; Biology; Typing; Microbiology; Genotype; Ampicillin; Virology; Molecular epidemiology; Haemophilus; Antibiotics; Bacteria; Genetics; Gene","score_opus":0.027894485526710137,"score_gpt":0.2914951388595407,"score_spread":0.26360065333283056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141570244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978332,0.00064161746,0.000040199804,0.00018755085,0.000015107179,0.000036005327,0.00049747236,0.0000070676524,0.00074177654],"genre_scores_gemma":[0.99559915,0.0013604066,0.000193238,0.00049257197,0.000018309553,0.00002035234,0.00085785124,0.000006191924,0.0014519579],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993673,0.000048455317,0.000035214962,0.00006393332,0.00016321603,0.0003218977],"domain_scores_gemma":[0.99877495,0.00006465329,0.00017764396,0.000019939333,0.00055728486,0.0004054243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028991778,0.00067813974,0.0003043912,0.00093608384,0.0025547151,0.001007958,0.0008120149,0.0005749977,0.000992518],"category_scores_gemma":[0.0012522837,0.000702337,0.0002563777,0.0018058392,0.0009770129,0.00034030603,0.00075260794,0.0008256182,0.00023809158],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000114476185,0.00008057878,0.991,0.000055082168,0.00002726708,0.0007579536,0.0016956071,0.0000820405,0.0010865746,0.000028294877,0.0009140238,0.004158148],"study_design_scores_gemma":[0.00001533495,0.000085221676,0.9958599,0.00003316983,0.000017857983,0.00034495117,0.0023445282,0.00013814741,0.0001309611,0.0000074728946,0.0010137218,0.000008713134],"about_ca_topic_score_codex":0.98724246,"about_ca_topic_score_gemma":0.9933868,"teacher_disagreement_score":0.015510556,"about_ca_system_score_codex":0.015510556,"about_ca_system_score_gemma":0.015899146,"threshold_uncertainty_score":0.1125375},"labels":[],"label_agreement":null},{"id":"W2141973151","doi":"10.1128/jcm.39.7.2541-2547.2001","title":"Development of a PCR Assay for Identification of Staphylococci at Genus and Species Levels","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":301,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Biology; Amplicon; Polymerase chain reaction; Microbiology; genomic DNA; Primer (cosmetics); Genetics; Sequence analysis; Gene","score_opus":0.10434180230201084,"score_gpt":0.39044275905764203,"score_spread":0.2861009567556312,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141973151","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38492352,0.006197349,0.5989166,0.00024996416,0.0002107223,0.0012743827,0.0012672214,0.0021300048,0.0048302417],"genre_scores_gemma":[0.33523405,0.0026887276,0.6537274,0.00032787735,0.00008700107,0.00096298236,0.0022994748,0.00012580582,0.0045466707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980258,0.00044918025,0.00017329172,0.0005749587,0.00058686204,0.00018982143],"domain_scores_gemma":[0.9980096,0.0007357331,0.00031383504,0.00014750299,0.0006345401,0.00015872582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014425184,0.001280887,0.0008859797,0.001973361,0.00023909776,0.00056632597,0.000711229,0.0008103394,0.0015864243],"category_scores_gemma":[0.0025893028,0.0006575293,0.00053208903,0.0005822948,0.00046662227,0.0005083871,0.0005372497,0.0010811918,0.0013945239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000042023912,0.000028182245,0.00092166814,0.00007731909,0.000010051411,0.000026746666,0.000034039498,0.00010915184,0.9899625,0.00008515172,0.000042775875,0.008660347],"study_design_scores_gemma":[0.000030759064,0.0010307513,0.007999791,0.00006888314,0.00008268972,0.00075549254,0.000082038714,0.008996139,0.97631377,0.00022251935,0.0043783453,0.000038933824],"about_ca_topic_score_codex":0.00095305673,"about_ca_topic_score_gemma":0.001532048,"teacher_disagreement_score":0.001973361,"about_ca_system_score_codex":0.00034266678,"about_ca_system_score_gemma":0.00052784535,"threshold_uncertainty_score":0.007628858},"labels":[],"label_agreement":null},{"id":"W2141992911","doi":"10.1128/jcm.42.10.4686-4696.2004","title":"Accuracy of Phenotypic and Genotypic Testing for Identification of <i>Streptococcus pneumoniae</i> and Description of <i>Streptococcus pseudopneumoniae</i> sp. nov","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":253,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre","funders":"","keywords":"Streptococcus pneumoniae; Streptococcus oralis; Microbiology; Streptococcus mitis; Biology; Pneumolysin; Streptococcaceae; Streptococcus; Viridans streptococci; Genotype; Polymerase chain reaction; Bacteria; Genetics; Gene; Antibiotics","score_opus":0.059630440756577203,"score_gpt":0.3536214053946956,"score_spread":0.2939909646381184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141992911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9696154,0.0033194378,0.009584984,0.00044177126,0.00025497083,0.000046222496,0.00105625,0.00028078078,0.01540022],"genre_scores_gemma":[0.9954407,0.00027812322,0.0031040574,0.0000736828,0.00002785706,0.000007938217,0.0005442008,0.000017776192,0.0005056908],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9887483,0.0034917719,0.0017241286,0.0012493209,0.0040801577,0.0007062542],"domain_scores_gemma":[0.9724664,0.0125066945,0.0037238786,0.003803496,0.0065044616,0.000995083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005740979,0.0005572859,0.00038044283,0.0016648599,0.00024915388,0.0015812702,0.0009976579,0.0011305392,0.00095028395],"category_scores_gemma":[0.034444366,0.00038673545,0.00036625858,0.00057493604,0.0007331361,0.0010261275,0.0008624664,0.00058231666,0.001420144],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009994054,0.000088204666,0.91957724,0.00014868159,0.00010891812,0.00030017926,0.0001860309,0.0012619977,0.032159787,0.00020063086,0.00056289847,0.044406004],"study_design_scores_gemma":[0.00002112197,0.0005526547,0.9111889,0.00015419078,0.00021388599,0.0051886565,0.00037844805,0.018234571,0.05903404,0.0004059563,0.0045800586,0.00004751601],"about_ca_topic_score_codex":0.0030532326,"about_ca_topic_score_gemma":0.004262489,"teacher_disagreement_score":0.005740979,"about_ca_system_score_codex":0.00055144174,"about_ca_system_score_gemma":0.0003702805,"threshold_uncertainty_score":0.030361593},"labels":[],"label_agreement":null},{"id":"W2142042648","doi":"10.1128/jcm.00391-11","title":"Fourteen-Genome Comparison Identifies DNA Markers for Severe-Disease-Associated Strains of Clostridium difficile","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University and Génome Québec Innovation Centre; Jewish General Hospital; McGill University","funders":"National Human Genome Research Institute; Genome Canada; Canadian Institutes of Health Research; Association of Medical Microbiology and Infectious Disease Canada; Bayer HealthCare; McGill University","keywords":"Biology; Clostridium difficile; Genome; Candidate gene; Genetics; Single-nucleotide polymorphism; Gene; Genetic marker; Genotype","score_opus":0.12833375349292267,"score_gpt":0.3891858861263079,"score_spread":0.26085213263338525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142042648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956994,0.00041573457,0.0010855115,0.00002590883,0.000008142543,0.000016992364,0.0022788858,0.000025961239,0.0004432732],"genre_scores_gemma":[0.98131406,0.00029480705,0.0049053417,0.0000992513,0.000007890777,0.00002565815,0.012946027,0.000025622769,0.00038140768],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996233,0.00005326363,0.000031543994,0.00014278044,0.00008066465,0.00006842604],"domain_scores_gemma":[0.99939716,0.00018960286,0.00015804441,0.000048013368,0.00010436977,0.00010276362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035577425,0.00026946963,0.00042333195,0.0011406787,0.00024365158,0.0004163393,0.00024394681,0.00040679445,0.0011337234],"category_scores_gemma":[0.00083515554,0.00012422288,0.0005437699,0.001244493,0.00012323678,0.00015331483,0.00055777084,0.00037047063,0.00028129612],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017657854,0.00025520852,0.20117244,0.00030954654,0.00045256398,0.00037760253,0.00034905993,0.0006117599,0.7666786,0.0002706119,0.000601485,0.027155396],"study_design_scores_gemma":[0.000032641852,0.00045949433,0.9705235,0.000028274722,0.00023140482,0.00081422616,0.00020803438,0.0020864047,0.022214975,0.00014018021,0.00324549,0.00001537682],"about_ca_topic_score_codex":0.0012452453,"about_ca_topic_score_gemma":0.0022087607,"teacher_disagreement_score":0.0012452453,"about_ca_system_score_codex":0.00026101506,"about_ca_system_score_gemma":0.00025221103,"threshold_uncertainty_score":0.0037926435},"labels":[],"label_agreement":null},{"id":"W2142248046","doi":"10.1128/jcm.43.11.5782-5783.2005","title":"Comparison of the RSV Respi-Strip with Direct Fluorescent-Antigen Detection for Diagnosis of Respiratory Syncytial Virus Infection in Pediatric Patients","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Respiratory system; Confidence interval; Virus; Medicine; Antigen; Virology; Respiratory disease; Immunology; Internal medicine; Lung","score_opus":0.09478156510911191,"score_gpt":0.4479726698552558,"score_spread":0.3531911047461439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142248046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995834,0.0021657834,0.0009934925,0.00009402226,0.000046372625,0.000031459145,0.00013005387,0.0000209434,0.00068385334],"genre_scores_gemma":[0.9962418,0.00069302274,0.0023960758,0.00008337917,0.000051110845,0.000028158685,0.0003366668,0.0000072495986,0.00016256848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99429816,0.0030892082,0.0004158766,0.000544453,0.0014438379,0.00020852045],"domain_scores_gemma":[0.9860955,0.010451894,0.0010982469,0.0004230323,0.0012991661,0.0006321108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007066394,0.0005862198,0.0008587692,0.0011369538,0.00015499567,0.00067614915,0.0005956804,0.0009968826,0.0006446289],"category_scores_gemma":[0.014148569,0.0005461187,0.000516738,0.00062951044,0.0003843009,0.0006168637,0.0003855586,0.00077876105,0.00037974384],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.025275145,0.00057742244,0.8861474,0.0005465568,0.00083789544,0.00089460996,0.0006596478,0.0018818429,0.019286135,0.00023494707,0.0011191054,0.06253934],"study_design_scores_gemma":[0.0015125971,0.031524997,0.9135728,0.0001824729,0.0007840316,0.010191824,0.00038884196,0.020282427,0.018946832,0.00022101807,0.0023009318,0.000091215355],"about_ca_topic_score_codex":0.0006397673,"about_ca_topic_score_gemma":0.0012231715,"teacher_disagreement_score":0.007066394,"about_ca_system_score_codex":0.00035373573,"about_ca_system_score_gemma":0.000287004,"threshold_uncertainty_score":0.03737116},"labels":[],"label_agreement":null},{"id":"W2142342493","doi":"10.1128/jcm.41.1.498-499.2003","title":"Analysis of <i>Mycobacterium avium</i> Complex Isolates from Blood Samples of AIDS Patients by Pulsed-Field Gel Electrophoresis","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital; University of Alberta","funders":"","keywords":"Mycobacterium avium complex; Mycobacterium; Microbiology; Biology; Cluster (spacecraft); Gel electrophoresis; Pulsed-field gel electrophoresis; Bacteria; Virology; Molecular biology; Genotype; Genetics; Gene","score_opus":0.032587829450313986,"score_gpt":0.34179720060408036,"score_spread":0.3092093711537664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142342493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973236,0.00040433143,0.0007510612,0.00007257432,0.000012076886,0.000031003783,0.0004539559,0.0000143971165,0.0009369491],"genre_scores_gemma":[0.99622715,0.00035087895,0.0017209697,0.0000839501,0.000012069917,0.000011197883,0.0009481781,0.0000084239255,0.00063713995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998493,0.000011767554,0.000012000598,0.00002911184,0.000043364398,0.000054301476],"domain_scores_gemma":[0.9996302,0.00008997652,0.000044553,0.000016803986,0.00014173855,0.00007677992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013079449,0.00029130894,0.00019830707,0.0008830901,0.0005261362,0.00046365513,0.00015614575,0.00023352071,0.0012889851],"category_scores_gemma":[0.0010012453,0.000090649606,0.00018074093,0.00070017675,0.00036234388,0.00009118749,0.00013443387,0.00031321635,0.0002956331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009885369,0.00018414526,0.33417967,0.00024275623,0.000076091164,0.0022774835,0.0024693871,0.00015051904,0.631403,0.00024525766,0.0008031097,0.02698001],"study_design_scores_gemma":[0.00004153955,0.0008075951,0.87641025,0.000048911952,0.00013612813,0.0061143744,0.0017203344,0.0007147313,0.10818718,0.00012247007,0.0056771045,0.000019350819],"about_ca_topic_score_codex":0.062135525,"about_ca_topic_score_gemma":0.038573433,"teacher_disagreement_score":0.062135525,"about_ca_system_score_codex":0.00048086134,"about_ca_system_score_gemma":0.00056108524,"threshold_uncertainty_score":0.12354767},"labels":[],"label_agreement":null},{"id":"W2142408159","doi":"10.1128/jcm.43.4.1632-1639.2005","title":"Species-Level Identification of Isolates of the <i>Acinetobacter calcoaceticus</i> - <i>Acinetobacter baumannii</i> Complex by Sequence Analysis of the 16S-23S rRNA Gene Spacer Region","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Dalhousie University; National Science Council","keywords":"Acinetobacter calcoaceticus; Biology; Acinetobacter baumannii; Genetics; genomic DNA; Sequence analysis; Microbiology; Acinetobacter; Ribosomal RNA; Intergenic region; 16S ribosomal RNA; Ribosomal DNA; Gene; Phylogenetics; Genome; Bacteria","score_opus":0.05924899216092698,"score_gpt":0.329488273489171,"score_spread":0.270239281328244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142408159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855703,0.00042662883,0.00053454936,0.000027242068,0.0000057217553,0.00003472809,0.00011930059,0.000008814692,0.00028592945],"genre_scores_gemma":[0.99582016,0.0002799913,0.003370731,0.000024553958,0.0000075370535,0.00001937686,0.0003963127,0.0000048933257,0.00007648261],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991641,0.00018140343,0.00015971101,0.00016968818,0.00022047268,0.000104640996],"domain_scores_gemma":[0.9991642,0.00025915602,0.0002078068,0.00006304528,0.0002195359,0.00008619832],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005671378,0.00024868659,0.00024278961,0.0011291375,0.00029810905,0.0005309413,0.00016389266,0.00037035835,0.00042451135],"category_scores_gemma":[0.0022622999,0.0001444669,0.00020303013,0.00072245795,0.0002549189,0.00032980385,0.0002867365,0.00020305025,0.00022108287],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080841256,0.00024507247,0.3498329,0.0002671396,0.00005331906,0.000664173,0.0009843115,0.00030956996,0.6228931,0.00010499582,0.00014971782,0.023687236],"study_design_scores_gemma":[0.00006473317,0.0018823793,0.7298221,0.000112407404,0.00021191999,0.009828328,0.0021340782,0.0026005981,0.24930435,0.00019154491,0.0037973209,0.00005017782],"about_ca_topic_score_codex":0.0021125316,"about_ca_topic_score_gemma":0.0019491581,"teacher_disagreement_score":0.0021125316,"about_ca_system_score_codex":0.00026576009,"about_ca_system_score_gemma":0.00039230252,"threshold_uncertainty_score":0.004200399},"labels":[],"label_agreement":null},{"id":"W2142418684","doi":"10.1128/jcm.03218-13","title":"Twenty-Five-Year Outbreak of Pseudomonas aeruginosa Infecting Individuals with Cystic Fibrosis: Identification of the Prairie Epidemic Strain","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Calgary","funders":"","keywords":"Pseudomonas aeruginosa; Cystic fibrosis; Sputum; Multilocus sequence typing; Outbreak; Population; Bronchiectasis; Medicine; Microbiology; Biology; Genotype; Internal medicine; Virology; Bacteria; Lung; Pathology; Tuberculosis; Genetics","score_opus":0.02658169219869052,"score_gpt":0.36496816328619486,"score_spread":0.33838647108750436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142418684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99988985,0.000021806016,0.000020301344,0.00000858231,7.235827e-7,0.0000023560606,0.000017338694,7.3972535e-7,0.000038225626],"genre_scores_gemma":[0.99973565,0.000030791627,0.000077190525,0.000020549884,0.0000040550763,0.000003167112,0.000078953104,4.9635264e-7,0.000049106995],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996464,0.00007766447,0.000033545388,0.00008663965,0.000073905736,0.000081864186],"domain_scores_gemma":[0.999361,0.00011876262,0.00021413797,0.000044827833,0.00008551525,0.00017584933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044554385,0.00017244327,0.00020053593,0.0003637069,0.00062026,0.00040698063,0.00020017104,0.0003624292,0.0004232583],"category_scores_gemma":[0.0011646127,0.00020100456,0.00015226589,0.0002712415,0.00028001174,0.00032563883,0.00053553976,0.00048497293,0.000089201465],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052367097,0.000049655315,0.9952421,0.000006069637,0.000009298167,0.00074994384,0.00046421099,0.000021101838,0.0018183402,0.0000087656035,0.00005260185,0.0015255618],"study_design_scores_gemma":[0.0000031376735,0.00016394867,0.99699533,0.0000028461209,0.000006936805,0.0018842171,0.00045932728,0.00010706279,0.00023478158,0.000007393584,0.00013171713,0.0000032703963],"about_ca_topic_score_codex":0.0049881027,"about_ca_topic_score_gemma":0.0060956315,"teacher_disagreement_score":0.0049881027,"about_ca_system_score_codex":0.00034084095,"about_ca_system_score_gemma":0.00033163792,"threshold_uncertainty_score":0.009918153},"labels":[],"label_agreement":null},{"id":"W2142438665","doi":"10.1128/jcm.39.11.4149-4151.2001","title":"Evaluation of a Latex Agglutination Test (MRSA-Screen) for Detection of Oxacillin Resistance in Coagulase-Negative Staphylococci","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"SCCmec; Latex fixation test; Coagulase; Microbiology; Direct agglutination test; Staphylococcus saprophyticus; Broth microdilution; Staphylococcus; Medicine; Biology; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Antibiotics; Minimum inhibitory concentration; Serology; Bacteria; Immunology","score_opus":0.08237002448843093,"score_gpt":0.408260365452411,"score_spread":0.32589034096398006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142438665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864634,0.0019222493,0.008425296,0.00008843367,0.000057404402,0.00021301124,0.00057455857,0.0002068032,0.002048844],"genre_scores_gemma":[0.98778814,0.00051614083,0.010139741,0.0001306874,0.000020189142,0.00006248728,0.0006749372,0.000011511788,0.00065627426],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983589,0.00060264283,0.00017038686,0.0002722655,0.00052194693,0.00007373141],"domain_scores_gemma":[0.99843544,0.00071909686,0.00021922727,0.0000647901,0.00042425748,0.00013705553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013293611,0.0007062757,0.00050132954,0.0012365498,0.00012537409,0.00029732453,0.00032340226,0.00045350054,0.00065012096],"category_scores_gemma":[0.0023752023,0.0002591701,0.00030296936,0.000576712,0.00022153655,0.00021598607,0.00026573375,0.00026332343,0.00043186898],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028862874,0.0008773899,0.21572447,0.00042318815,0.00019754238,0.0009933017,0.000308655,0.00042655814,0.7291589,0.00007199672,0.0005808561,0.04835093],"study_design_scores_gemma":[0.0003363417,0.016622866,0.6125452,0.00006328639,0.00032984462,0.008706818,0.00023059739,0.007076059,0.35033095,0.00007143288,0.0036189363,0.00006771558],"about_ca_topic_score_codex":0.0008288607,"about_ca_topic_score_gemma":0.0008907923,"teacher_disagreement_score":0.0013293611,"about_ca_system_score_codex":0.00015910294,"about_ca_system_score_gemma":0.00016504027,"threshold_uncertainty_score":0.0070304275},"labels":[],"label_agreement":null},{"id":"W2142469054","doi":"10.1128/jcm.38.2.591-594.2000","title":"Pig and Goat Blood as Substitutes for Sheep Blood in Blood-Supplemented Agar Media","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary","funders":"","keywords":"Hemolysis; Biology; Agar plate; Microbiology; Agar; Candida albicans; Anaerobic exercise; Haemolysis; Chocolate agar; Horse; Blood culture; Bacteria; Veterinary medicine; Immunology; Physiology; Medicine; Antibiotics","score_opus":0.03457312718532748,"score_gpt":0.36378662130403766,"score_spread":0.3292134941187102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142469054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98173815,0.010553233,0.0042452496,0.00016216622,0.00015509082,0.00024970106,0.0002287796,0.00004497777,0.0026226533],"genre_scores_gemma":[0.96043175,0.0064868964,0.029214617,0.00018007611,0.00007802462,0.00016545749,0.0006080416,0.000042542306,0.0027926639],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788874,0.0011801437,0.00016233423,0.00018574757,0.00046676586,0.00011619752],"domain_scores_gemma":[0.9988569,0.00043444813,0.00027533225,0.000072751434,0.00022521973,0.00013546944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016461203,0.0007279699,0.00046502618,0.0008814735,0.00025301834,0.0010457354,0.00091476494,0.0004976136,0.0009241258],"category_scores_gemma":[0.0018434162,0.00022088314,0.00044522542,0.0005890656,0.00036361,0.00064136076,0.00076607335,0.00044426916,0.00037857617],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043178606,0.00056393474,0.007066072,0.00075344974,0.00007942385,0.0007555235,0.00027804152,0.00019497008,0.95816267,0.0003165033,0.00027477602,0.02723682],"study_design_scores_gemma":[0.000102763624,0.012747739,0.01933644,0.00028491847,0.00050689233,0.002854789,0.00064539065,0.0009306849,0.9492218,0.00014955243,0.013171866,0.000047090674],"about_ca_topic_score_codex":0.0008482218,"about_ca_topic_score_gemma":0.0017316089,"teacher_disagreement_score":0.0016461203,"about_ca_system_score_codex":0.00023665196,"about_ca_system_score_gemma":0.0005250298,"threshold_uncertainty_score":0.008705616},"labels":[],"label_agreement":null},{"id":"W2142536149","doi":"10.1128/jcm.38.12.4614-4615.2000","title":"Evaluation of Random Amplified Polymorphic DNA Typing of <i>Pseudomonas aeruginosa</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; University of British Columbia","funders":"","keywords":"RAPD; Typing; Pseudomonas aeruginosa; Biology; DNA; Genetics; Pseudomonadaceae; Microbiology; Pseudomonas; Bacteria; Medicine; Genetic diversity; Population","score_opus":0.05133312622409396,"score_gpt":0.3423363632704062,"score_spread":0.2910032370463122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142536149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.979864,0.0013050443,0.017151238,0.000092785616,0.000026276322,0.00008714225,0.0004047993,0.00010887453,0.0009598327],"genre_scores_gemma":[0.9512249,0.00067544985,0.046449672,0.00006261398,0.000026674945,0.00006997229,0.00096515403,0.000031199583,0.00049443264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995564,0.0015654316,0.00035032118,0.0008115,0.0015670835,0.00014168475],"domain_scores_gemma":[0.9940895,0.0026450083,0.0010351082,0.00043039347,0.0015909888,0.00020899466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025764154,0.00044889635,0.00039229132,0.00084456115,0.00019688837,0.0005119023,0.00038416407,0.0005235623,0.00031369927],"category_scores_gemma":[0.0055550775,0.00020109676,0.00022877657,0.0004985936,0.00039772195,0.00026167437,0.00021750896,0.00027877497,0.00037193796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005418684,0.00017056972,0.021148803,0.00014883556,0.000042186202,0.00012891668,0.000109878616,0.00034345486,0.9588905,0.000036118065,0.0000728981,0.01836605],"study_design_scores_gemma":[0.000046989913,0.0036840918,0.10992826,0.000039495917,0.00016721383,0.0028142077,0.00013352686,0.0032259927,0.8779652,0.00009317651,0.0018534965,0.000048318645],"about_ca_topic_score_codex":0.0005078096,"about_ca_topic_score_gemma":0.0007353934,"teacher_disagreement_score":0.0025764154,"about_ca_system_score_codex":0.0002409852,"about_ca_system_score_gemma":0.00019504658,"threshold_uncertainty_score":0.013625503},"labels":[],"label_agreement":null},{"id":"W2142755679","doi":"10.1128/jcm.02031-07","title":"Sequence Polymorphisms in a Surface PPE Protein Distinguish Types I, II, and III of <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Crohn's and Colitis Foundation of Canada; Faculty of Veterinary Medicine, University of Calgary; Crohn's and Colitis Foundation","keywords":"Paratuberculosis; Biology; Locus (genetics); Typing; Mycobacterium; Genetics; Gene; Microbiology; Nucleic acid sequence; Single-nucleotide polymorphism; Genotype; Bacteria","score_opus":0.0599509477736142,"score_gpt":0.35629586411123765,"score_spread":0.29634491633762344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142755679","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607015,0.0004981321,0.00261736,0.000042313393,0.0000077311415,0.000012095137,0.00022881103,0.00001899324,0.0005043903],"genre_scores_gemma":[0.9951664,0.00016314865,0.0035570364,0.000047791007,0.00000708999,0.000009936634,0.00067131745,0.000009178831,0.00036810042],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999879,0.000017020542,0.000015933365,0.000037549275,0.000028312583,0.00002210136],"domain_scores_gemma":[0.99971014,0.00007554473,0.00010539634,0.000023456289,0.000046528265,0.00003904622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014524937,0.00025674462,0.00017533482,0.00039361554,0.000101394995,0.0002588049,0.00015067124,0.00040032284,0.00067426794],"category_scores_gemma":[0.00040219104,0.00012473279,0.0002704299,0.00023589122,0.00019651627,0.000186421,0.00019824278,0.00028669852,0.00047755332],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011414384,0.000039671264,0.02751951,0.00004615339,0.000012670353,0.00020903005,0.000100968275,0.00004932213,0.96790725,0.000039225233,0.00005073872,0.0039114053],"study_design_scores_gemma":[0.00001934997,0.00074787275,0.60038596,0.000034885226,0.00007845494,0.006194063,0.00046978655,0.0010110267,0.38736334,0.0002725458,0.0034052182,0.000017397768],"about_ca_topic_score_codex":0.0003764277,"about_ca_topic_score_gemma":0.00038475142,"teacher_disagreement_score":0.00067426794,"about_ca_system_score_codex":0.0000699301,"about_ca_system_score_gemma":0.00006499451,"threshold_uncertainty_score":0.0022556782},"labels":[],"label_agreement":null},{"id":"W2142828726","doi":"10.1128/jcm.05397-11","title":"First Comprehensive Evaluation of the M.I.C. Evaluator Device Compared to Etest and CLSI Reference Dilution Methods for Antimicrobial Susceptibility Testing of Clinical Strains of Anaerobes and Other Fastidious Bacterial Species","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Etest; Fastidious organism; Broth microdilution; Agar dilution; Microbiology; Anaerobic bacteria; Biology; Imipenem; Penicillin; Antimicrobial; Bacteria; Antibiotics; Minimum inhibitory concentration; Antibiotic resistance","score_opus":0.30754040265560556,"score_gpt":0.4876338743173591,"score_spread":0.18009347166175355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142828726","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85219777,0.02844343,0.093527295,0.0015747407,0.0005910701,0.0050994554,0.0062301867,0.0020548308,0.010281206],"genre_scores_gemma":[0.79179126,0.0076686474,0.17812784,0.0014952188,0.0004201469,0.0020616476,0.011547712,0.000687946,0.0061995904],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.95473284,0.028236981,0.003233038,0.0026849234,0.010529222,0.0005830472],"domain_scores_gemma":[0.9395759,0.019852813,0.006037845,0.004762628,0.027929323,0.0018415229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.073953286,0.0019323297,0.002506474,0.0035486997,0.00089840364,0.0020817511,0.0022068785,0.0022908375,0.0010254532],"category_scores_gemma":[0.05359397,0.0011558996,0.0012357543,0.0019725356,0.00072378037,0.0014803037,0.002051459,0.0012297806,0.0007890035],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03946027,0.0044321837,0.19606166,0.004639611,0.0015608713,0.00047639466,0.0039965753,0.0044673374,0.21689533,0.0015657964,0.01271869,0.5137253],"study_design_scores_gemma":[0.0013772876,0.113895714,0.6446452,0.0013143645,0.0020456302,0.0026555448,0.0009001941,0.022691173,0.15857507,0.0002989925,0.050844237,0.0007566635],"about_ca_topic_score_codex":0.0036884241,"about_ca_topic_score_gemma":0.004884731,"teacher_disagreement_score":0.073953286,"about_ca_system_score_codex":0.0020693955,"about_ca_system_score_gemma":0.002177617,"threshold_uncertainty_score":0.39110702},"labels":[],"label_agreement":null},{"id":"W2142909323","doi":"10.1128/jcm.00671-08","title":"Evaluation of the OSOM <i>Trichomonas</i> Rapid Test versus Wet Preparation Examination for Detection of <i>Trichomonas vaginalis</i> Vaginitis in Specimens from Women with a Low Prevalence of Infection","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Trichomonas vaginalis; Vaginitis; Trichomonas Vaginitis; Trichomonas; Predictive value; Medicine; Gynecology; Trichomoniasis; False Negative Reactions; Vagina; Obstetrics; Internal medicine; Surgery","score_opus":0.06587523392721054,"score_gpt":0.36330943167110746,"score_spread":0.2974341977438969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142909323","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99837095,0.00053791096,0.0005435686,0.000039134175,0.000021468457,0.00003611269,0.000026115587,0.000008183879,0.00041659406],"genre_scores_gemma":[0.9981437,0.0002136969,0.0013811269,0.00003584828,0.000020047844,0.000020340145,0.00007173735,0.0000030032859,0.000110646164],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99688774,0.001727199,0.00019040355,0.0002674866,0.00073022343,0.00019698695],"domain_scores_gemma":[0.99314016,0.0049625756,0.0008300496,0.0001482062,0.0005239595,0.00039504137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0043630493,0.0005291313,0.0005041086,0.00086545723,0.0001771043,0.00044983145,0.0003765431,0.0006398543,0.00059187814],"category_scores_gemma":[0.012150946,0.00034679077,0.00031994455,0.00039588488,0.00045191435,0.00060371053,0.00030339687,0.0003097476,0.00016731626],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018464124,0.0011166082,0.8839791,0.00033701575,0.00019699431,0.0007097489,0.0004472797,0.0007138166,0.037558664,0.00010883148,0.000267855,0.05609993],"study_design_scores_gemma":[0.00063876517,0.059014875,0.88615936,0.00010577714,0.0003197189,0.0058407634,0.00072752486,0.015776658,0.030100156,0.00013428593,0.0011107068,0.00007141531],"about_ca_topic_score_codex":0.00072377385,"about_ca_topic_score_gemma":0.001471476,"teacher_disagreement_score":0.0043630493,"about_ca_system_score_codex":0.0002852918,"about_ca_system_score_gemma":0.0003210868,"threshold_uncertainty_score":0.02307427},"labels":[],"label_agreement":null},{"id":"W2143041183","doi":"10.1128/jcm.00098-09","title":"Detection of Plasmid-Mediated KPC-Producing <i>Klebsiella pneumoniae</i> in Ottawa, Canada: Evidence of Intrahospital Transmission","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Klebsiella pneumoniae; Plasmid; Microbiology; Transmission (telecommunications); Klebsiella infections; Klebsiella; Cross infection; Enterobacteriaceae; University hospital; Clinical microbiology; Medicine; Biology; Virology; Gene; Escherichia coli; Emergency medicine; Genetics","score_opus":0.013895942695330161,"score_gpt":0.2938609725383654,"score_spread":0.27996502984303523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143041183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976109,0.0003152284,0.00012569965,0.00015516594,0.000006533895,0.000045482648,0.00036658035,0.000012111745,0.0013622387],"genre_scores_gemma":[0.9981273,0.0003190247,0.00037502067,0.00014437267,0.00000460291,0.000013022444,0.00029960394,0.000004674486,0.0007124206],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909806,0.0000645992,0.000075810305,0.0001226525,0.00032994276,0.00030897243],"domain_scores_gemma":[0.9982968,0.00014574581,0.00023749519,0.000049523154,0.000789715,0.00048066484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024998598,0.00048033267,0.00035725985,0.0012226502,0.0033767954,0.0013897351,0.0009993108,0.00065892475,0.0015050876],"category_scores_gemma":[0.0014707876,0.00054900907,0.00026517062,0.0014248304,0.0014544846,0.00022604759,0.0007818498,0.00077606883,0.0003145225],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022569121,0.00007815703,0.97129065,0.00011095712,0.00004257376,0.0019174222,0.0036142704,0.00015586948,0.01563866,0.0000856659,0.0006018325,0.006238268],"study_design_scores_gemma":[0.000021769292,0.0001719596,0.987693,0.000046801473,0.00006522333,0.0021299361,0.004803127,0.0002483358,0.0032013413,0.00001948945,0.0015540894,0.000044948913],"about_ca_topic_score_codex":0.9755088,"about_ca_topic_score_gemma":0.98340917,"teacher_disagreement_score":0.02449119,"about_ca_system_score_codex":0.012152543,"about_ca_system_score_gemma":0.014113336,"threshold_uncertainty_score":0.08817327},"labels":[],"label_agreement":null},{"id":"W2143142696","doi":"10.1128/jcm.42.7.3356-3358.2004","title":"Quality Control Guidelines for BAL9141 (Ro 63-9141), an Investigational Cephalosporin, When Reference MIC and Standardized Disk Diffusion Susceptibility Test Methods Are Used","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Strong; University of Washington; Cleveland Clinic Foundation; University of Alberta; Cleveland Clinic","keywords":"Cephalosporin; Food and drug administration; Medicine; Multicenter study; Medical physics; Antibiotics; Microbiology; Surgery; Pharmacology; Biology; Randomized controlled trial","score_opus":0.22894240786371653,"score_gpt":0.5194099150774253,"score_spread":0.29046750721370873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143142696","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14538623,0.012312576,0.6517927,0.011822074,0.0050482354,0.06818125,0.011987693,0.008381663,0.085087605],"genre_scores_gemma":[0.21782303,0.003907244,0.6872499,0.008471475,0.0010232704,0.03461429,0.025731064,0.0011988004,0.019980853],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.88982284,0.052840956,0.018686095,0.004335624,0.031970784,0.0023436921],"domain_scores_gemma":[0.83866346,0.025978435,0.018370952,0.019426411,0.09569183,0.0018689424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0739334,0.0012606826,0.0013249019,0.0041971966,0.0035911566,0.0037829857,0.005169771,0.004407723,0.004299147],"category_scores_gemma":[0.09644744,0.0008875613,0.0017292104,0.0025903743,0.0020716714,0.0012306196,0.0012069098,0.0025720885,0.004406932],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032486168,0.005445922,0.070948265,0.00450314,0.00043307038,0.0019832684,0.006591033,0.0029322451,0.2526208,0.01486205,0.1555932,0.48083848],"study_design_scores_gemma":[0.0010825455,0.0072831525,0.096832916,0.0046375864,0.0007117224,0.0055535906,0.0021115823,0.014758989,0.29792246,0.002816129,0.5659134,0.00037591634],"about_ca_topic_score_codex":0.008173193,"about_ca_topic_score_gemma":0.009962704,"teacher_disagreement_score":0.0739334,"about_ca_system_score_codex":0.002149342,"about_ca_system_score_gemma":0.009284349,"threshold_uncertainty_score":0.39100188},"labels":[],"label_agreement":null},{"id":"W2143709116","doi":"10.1128/jcm.02153-08","title":"A Common Variant of Staphylococcal Cassette Chromosome <i>mec</i> Type IVa in Isolates from Copenhagen, Denmark, Is Not Detected by the BD GeneOhm Methicillin-Resistant <i>Staphylococcus aureus</i> Assay","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada)","funders":"","keywords":"Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Staphylococcal infections; SCCmec; Medicine; Biology; Genetics; Bacteria","score_opus":0.03531464013109602,"score_gpt":0.3417700621961726,"score_spread":0.3064554220650766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143709116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978923,0.00041727684,0.0005118522,0.000018075581,0.00001560153,0.000016315482,0.00054702815,0.000008983992,0.0005726353],"genre_scores_gemma":[0.997398,0.00017692632,0.00082573,0.000034245455,0.000004181861,0.00000906545,0.0012557284,0.000011491879,0.00028460787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99803084,0.00014923605,0.00033796558,0.00061486766,0.0006690369,0.00019806837],"domain_scores_gemma":[0.99872714,0.0002958512,0.00046195995,0.000104737774,0.0002425774,0.0001677484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055291806,0.00050665403,0.00061449653,0.000779193,0.00040922363,0.0013950599,0.00044311731,0.0005828014,0.0004837319],"category_scores_gemma":[0.0016313421,0.0007021182,0.00048602436,0.000671361,0.0004681703,0.00022962666,0.00040669634,0.00040192256,0.00029321204],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007913361,0.00012236803,0.49349892,0.00020885229,0.0001408865,0.0013833714,0.00084473804,0.00035526953,0.49686056,0.0001533427,0.0003235295,0.005316903],"study_design_scores_gemma":[0.000040135463,0.0006839991,0.90591884,0.00006712361,0.00021321651,0.0060791685,0.0010869376,0.0007662187,0.082120195,0.000045174686,0.0029339788,0.000044954733],"about_ca_topic_score_codex":0.01705637,"about_ca_topic_score_gemma":0.019857323,"teacher_disagreement_score":0.01705637,"about_ca_system_score_codex":0.0005126729,"about_ca_system_score_gemma":0.00065271696,"threshold_uncertainty_score":0.03391421},"labels":[],"label_agreement":null},{"id":"W2143932027","doi":"10.1128/jcm.40.11.4375-4381.2002","title":"Characteristics of Rare or Recently Described <i>Corynebacterium</i> Species Recovered from Human Clinical Material in Canada","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"","keywords":"Corynebacterium; Biology; 16S ribosomal RNA; Microbiology; Bacteria; Human disease; Human pathogen; Ribosomal RNA; Taxon; Sequence analysis; Gene; Genetics; Botany","score_opus":0.05736487869095965,"score_gpt":0.30069067283254625,"score_spread":0.2433257941415866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143932027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99701273,0.0006340765,0.0001441966,0.000060856477,0.000010019916,0.000023140141,0.0006323756,0.0000064019787,0.0014761705],"genre_scores_gemma":[0.99625,0.00076111744,0.0004880784,0.00009548613,0.000010929695,0.000009694732,0.001265492,0.000006909338,0.0011123619],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999511,0.000021078828,0.000048007114,0.00009206415,0.00017235741,0.00015543509],"domain_scores_gemma":[0.99944216,0.0000417741,0.00007935954,0.000022061406,0.00029549774,0.00011918369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014644496,0.00025295516,0.00032753558,0.001579876,0.0013785188,0.000981552,0.00041453715,0.00034943793,0.0008334693],"category_scores_gemma":[0.0010071041,0.00020673784,0.00014381912,0.0015777992,0.0005493467,0.00016946923,0.00038683298,0.00026159853,0.00024010155],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052439835,0.00008827918,0.86256087,0.00025181973,0.000050319628,0.004851085,0.0048754113,0.0002741871,0.10019356,0.00018046223,0.001001992,0.025147595],"study_design_scores_gemma":[0.000010809511,0.00013613755,0.97589105,0.00005748478,0.00003496958,0.0060501676,0.0031035792,0.00020317986,0.008489092,0.000025703319,0.0059767566,0.00002119985],"about_ca_topic_score_codex":0.53774446,"about_ca_topic_score_gemma":0.70587313,"teacher_disagreement_score":0.46225554,"about_ca_system_score_codex":0.0023089598,"about_ca_system_score_gemma":0.002747443,"threshold_uncertainty_score":0.9299557},"labels":[],"label_agreement":null},{"id":"W2143993063","doi":"10.1128/jcm.01718-12","title":"Targeting both rs12979860 and rs8099917 Polymorphisms with a Single-Tube High-Resolution Melting Assay for <i>IL28B</i> Genotyping","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Genotyping; High Resolution Melt; Genotype; Biology; Interleukin 28B; Haplotype; Duplex (building); Melting curve analysis; Hepatitis C virus; Virology; Genetics; Molecular biology; DNA; Single-nucleotide polymorphism; Gene; Polymerase chain reaction; Virus","score_opus":0.07356825854248218,"score_gpt":0.37438811871586297,"score_spread":0.3008198601733808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143993063","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92057467,0.0010516284,0.07156275,0.00025194854,0.00010181593,0.00062197266,0.002203571,0.00087053864,0.0027611323],"genre_scores_gemma":[0.8588101,0.00034816103,0.13358565,0.00028561443,0.0000573517,0.0010213449,0.0022267425,0.0001478902,0.0035172307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973943,0.0009610538,0.00018852256,0.00067727425,0.0006469592,0.00013177989],"domain_scores_gemma":[0.9980557,0.0009826126,0.00041099786,0.00022867581,0.00020827247,0.00011376236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015468987,0.0008900923,0.0008697954,0.001414461,0.0002870891,0.0004292899,0.00051347516,0.0009970611,0.0021569312],"category_scores_gemma":[0.003453266,0.0006522975,0.000644331,0.00069020427,0.00050248636,0.0002659279,0.00040612917,0.001082041,0.0011344553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018875566,0.000252942,0.05708696,0.00016093544,0.00027107898,0.00042976486,0.00037200423,0.0012922655,0.90450174,0.00044926212,0.0008180309,0.032477316],"study_design_scores_gemma":[0.0003413969,0.0021297135,0.19971466,0.000077365796,0.0003186153,0.004300531,0.00011008939,0.01761326,0.7671962,0.0008274867,0.007251149,0.00011954365],"about_ca_topic_score_codex":0.00047061575,"about_ca_topic_score_gemma":0.0012876893,"teacher_disagreement_score":0.0021569312,"about_ca_system_score_codex":0.0002554315,"about_ca_system_score_gemma":0.00030731678,"threshold_uncertainty_score":0.008180916},"labels":[],"label_agreement":null},{"id":"W2144162688","doi":"10.1128/jcm.42.6.2694-2700.2004","title":"Comparison of Blood Smear, Antigen Detection, and Nested-PCR Methods for Screening Refugees from Regions Where Malaria Is Endemic after a Malaria Outbreak in Quebec, Canada","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Montreal General Hospital","funders":"Health Canada; McGill University Health Centre","keywords":"Malaria; Refugee; Outbreak; Plasmodium falciparum; Medicine; Immunology; Blood smear; Nested polymerase chain reaction; Virology; Biology; Polymerase chain reaction; Geography","score_opus":0.04416441253655086,"score_gpt":0.41928531861446183,"score_spread":0.375120906077911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144162688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98159206,0.005265826,0.0018146147,0.0007512856,0.00008650555,0.00059052,0.001759492,0.00010404781,0.008035715],"genre_scores_gemma":[0.98809195,0.0021045704,0.0057243006,0.00038859886,0.000015010086,0.0001223015,0.0012772909,0.000026287857,0.0022497487],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9977575,0.00039924643,0.0001298482,0.0002944583,0.0008913976,0.0005276113],"domain_scores_gemma":[0.99494016,0.000910924,0.0004659178,0.00010472753,0.0025947434,0.0009836183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025424892,0.00088065787,0.00056402467,0.0020140547,0.0020118686,0.0015964335,0.0017297075,0.00059968873,0.0014629338],"category_scores_gemma":[0.0064918483,0.0006147282,0.00056583283,0.0016181468,0.0011629742,0.00056817883,0.0007588722,0.0006213594,0.00028958268],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041518994,0.0004128999,0.8720281,0.0010035717,0.00042465967,0.0007046818,0.004854048,0.0032060037,0.010681544,0.00046156748,0.0038280378,0.09824296],"study_design_scores_gemma":[0.00026849282,0.0011214311,0.97903275,0.00030772667,0.00024441467,0.00045728608,0.0039235526,0.007198989,0.002657699,0.000050768296,0.0045923586,0.00014446965],"about_ca_topic_score_codex":0.98526716,"about_ca_topic_score_gemma":0.9954307,"teacher_disagreement_score":0.021349283,"about_ca_system_score_codex":0.021349283,"about_ca_system_score_gemma":0.022942403,"threshold_uncertainty_score":0.15490061},"labels":[],"label_agreement":null},{"id":"W2144242593","doi":"10.1128/jcm.42.2.839-840.2004","title":"Development of a New Serological Test for Serotyping<i>Haemophilus parasuis</i>Isolates and Determination of Their Prevalence in North America","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Serotype; Haemophilus; Serology; Biology; Virology; Microbiology; Immunodiffusion; Pasteurellaceae; Ouchterlony double immunodiffusion; Haemophilus influenzae; Antibody; Bacteria; Immunology; Genetics; Antibiotics; Antiserum","score_opus":0.062190994545028994,"score_gpt":0.36396607838507294,"score_spread":0.3017750838400439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144242593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98929286,0.0014393115,0.006225328,0.00022144009,0.000055377346,0.0001347757,0.0001965971,0.000088915294,0.0023452952],"genre_scores_gemma":[0.97454876,0.0010565644,0.021976143,0.00035055738,0.000037808237,0.00016180024,0.0008530621,0.000011901576,0.0010033624],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995123,0.00010202955,0.000043844884,0.000112398426,0.00017650338,0.000052992287],"domain_scores_gemma":[0.99909055,0.00022188081,0.00016377855,0.00004416388,0.000355826,0.0001237891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006755647,0.00038472828,0.00027360296,0.00078481325,0.00021814574,0.00028478715,0.00033718385,0.00054590456,0.0006325859],"category_scores_gemma":[0.00084537274,0.0002954057,0.00018975919,0.00029811956,0.00055312726,0.0003760827,0.00024355309,0.00048292865,0.00015793515],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005316347,0.00092203525,0.41007772,0.00026615828,0.000080530364,0.0004709219,0.0007034552,0.00024146544,0.5139048,0.00014240552,0.0009333657,0.07172551],"study_design_scores_gemma":[0.00016195398,0.00454836,0.9194586,0.000095894546,0.00017263487,0.0046078027,0.0006913286,0.002223628,0.058709912,0.00010943754,0.009186302,0.000034217308],"about_ca_topic_score_codex":0.009125465,"about_ca_topic_score_gemma":0.015642093,"teacher_disagreement_score":0.009125465,"about_ca_system_score_codex":0.00040770503,"about_ca_system_score_gemma":0.0004434959,"threshold_uncertainty_score":0.018144727},"labels":[],"label_agreement":null},{"id":"W2144308562","doi":"10.1128/jcm.02209-10","title":"Diagnostic Accuracy Assessment of Sensititre and Agar Disk Diffusion for Determining Antimicrobial Resistance Profiles of Bovine Clinical Mastitis Pathogens","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island; University of Calgary","funders":"","keywords":"Broth microdilution; Ceftiofur; Microbiology; Penicillin; Ampicillin; Mastitis; Antimicrobial; Medicine; Biology; Antibiotics; Minimum inhibitory concentration","score_opus":0.09210307818317769,"score_gpt":0.3628866120525455,"score_spread":0.2707835338693678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144308562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93716645,0.009492633,0.04777135,0.00024352423,0.00020738512,0.00017412292,0.00048490468,0.00034302456,0.0041166674],"genre_scores_gemma":[0.978622,0.00083573116,0.01953856,0.00009764403,0.000048750902,0.00006460546,0.00027475774,0.000025286474,0.00049269147],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.96587723,0.015288758,0.003438106,0.0030665768,0.011621151,0.0007082048],"domain_scores_gemma":[0.9454602,0.034377396,0.007357916,0.0041345,0.008089162,0.00058082247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018650169,0.00069607474,0.00079354533,0.003221584,0.00032517067,0.0014144644,0.0010239176,0.0012093069,0.0006304342],"category_scores_gemma":[0.0574676,0.00044809043,0.00065027183,0.0011971011,0.0008209391,0.0009680912,0.00090920454,0.0006067048,0.00057649054],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029369139,0.00028399643,0.8027175,0.00056402467,0.0006353018,0.00019947163,0.00085945684,0.002131296,0.059465095,0.00043818483,0.0005673816,0.1292014],"study_design_scores_gemma":[0.0001245488,0.0035765222,0.78352344,0.00036042105,0.0009085402,0.0041396217,0.00082740095,0.05981111,0.1409251,0.0008875002,0.0047524045,0.00016344096],"about_ca_topic_score_codex":0.0008675808,"about_ca_topic_score_gemma":0.0015346089,"teacher_disagreement_score":0.018650169,"about_ca_system_score_codex":0.00059930846,"about_ca_system_score_gemma":0.0004684138,"threshold_uncertainty_score":0.09863275},"labels":[],"label_agreement":null},{"id":"W2144646532","doi":"10.1128/jcm.01484-07","title":"Comparison of Seven Techniques for Typing International Epidemic Strains of <i>Clostridium difficile</i> : Restriction Endonuclease Analysis, Pulsed-Field Gel Electrophoresis, PCR-Ribotyping, Multilocus Sequence Typing, Multilocus Variable-Number Tandem-Repeat Analysis, Amplified Fragment Length Polymorphism, and Surface Layer Protein A Gene Sequence Typing","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":338,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Sherbrooke","funders":"York University; Centers for Disease Control and Prevention; U.S. Department of Veterans Affairs","keywords":"Multilocus sequence typing; Multiple Loci VNTR Analysis; Biology; Typing; Pulsed-field gel electrophoresis; Ribotyping; Restriction enzyme; Genetics; Variable number tandem repeat; Clostridium difficile; Clostridium difficile toxin A; Amplified fragment length polymorphism; Restriction site; Microbiology; Polymerase chain reaction; Genotype; Gene; Population; Genetic diversity","score_opus":0.08374199447423293,"score_gpt":0.42408334951471444,"score_spread":0.3403413550404815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144646532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930322,0.00091380335,0.004881214,0.000039826253,0.000012569254,0.00007903313,0.00014584561,0.00002841272,0.0008671375],"genre_scores_gemma":[0.9655276,0.0010544327,0.031836644,0.00003415323,0.000013117697,0.00008444754,0.0011784707,0.000019921896,0.0002511922],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99507457,0.001675338,0.0005354074,0.000601451,0.001698325,0.00041489713],"domain_scores_gemma":[0.9925916,0.002495916,0.0010400697,0.00053969165,0.0029674468,0.00036517],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004445236,0.0009915753,0.0003866203,0.002788503,0.0003318011,0.00068228046,0.00068667805,0.000656258,0.0002018573],"category_scores_gemma":[0.0076452694,0.00034973188,0.00039623395,0.0015490111,0.0005325447,0.0004980899,0.00073782227,0.00039209146,0.0001674741],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016897927,0.0009980412,0.69024336,0.0008782081,0.0005587098,0.00027616523,0.0019877574,0.0023292878,0.1963764,0.00013517012,0.00028979997,0.10423734],"study_design_scores_gemma":[0.00017153918,0.005701303,0.88106006,0.00017034456,0.00074392586,0.0020360788,0.0014455686,0.006785024,0.09840984,0.00015150759,0.003222118,0.00010278868],"about_ca_topic_score_codex":0.008879703,"about_ca_topic_score_gemma":0.016961377,"teacher_disagreement_score":0.008879703,"about_ca_system_score_codex":0.00059907546,"about_ca_system_score_gemma":0.00084663916,"threshold_uncertainty_score":0.023508966},"labels":[],"label_agreement":null},{"id":"W2144720377","doi":"10.1128/jcm.00575-11","title":"Acute Hepatitis as a Manifestation of Parvovirus B19 Infection","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parvovirus B19 Infection Studies","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Intestinal Research; Shared Health; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Parvovirus; Parvoviridae; Virology; Serology; Acute hepatitis; Hepatitis; Differential diagnosis; Medicine; Liver biopsy; Viral disease; Immunology; Biopsy; Virus; Pathology; Antibody","score_opus":0.12622570246555725,"score_gpt":0.43598141988551253,"score_spread":0.3097557174199553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144720377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9709961,0.005982041,0.0012884213,0.0007689187,0.00019746563,0.00009544507,0.00009212292,0.00015646462,0.020423017],"genre_scores_gemma":[0.99684864,0.001377303,0.00035499095,0.00035054918,0.0004038372,0.0000109971215,0.000049827377,0.000013792244,0.00058996433],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99938965,0.0001320712,0.00006678595,0.000078683486,0.00009215196,0.00024068513],"domain_scores_gemma":[0.9981818,0.00068781845,0.00041501634,0.00013565795,0.00010377714,0.00047598014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035488163,0.0011103336,0.00076347525,0.0015558026,0.0011506944,0.0013137201,0.0005855048,0.0018963397,0.0038345358],"category_scores_gemma":[0.003308598,0.00076371245,0.00047484026,0.001068805,0.0011110939,0.0016397771,0.0010564498,0.0015562346,0.0012461749],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017134218,0.00009536829,0.04850522,0.00007975298,0.00001032966,0.9437219,0.00030418945,0.000071335104,0.0030059793,0.0002788342,0.00040422607,0.0033515964],"study_design_scores_gemma":[0.00003791904,0.00017333131,0.02682647,0.000038675775,0.00001766348,0.9706322,0.00022154553,0.00021282026,0.00064774026,0.00026715695,0.0009072977,0.000017228456],"about_ca_topic_score_codex":0.0009388068,"about_ca_topic_score_gemma":0.0007556133,"teacher_disagreement_score":0.0038345358,"about_ca_system_score_codex":0.00035759225,"about_ca_system_score_gemma":0.00039151462,"threshold_uncertainty_score":0.012827814},"labels":[],"label_agreement":null},{"id":"W2144901667","doi":"10.1128/jcm.38.11.3953-3959.2000","title":"Identification of <i>Enterococcus</i> Species and Phenotypically Similar <i>Lactococcus</i> and <i>Vagococcus</i> Species by Reverse Checkerboard Hybridization to Chaperonin 60 Gene Sequences","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; National Research Council Canada; Plant Biotechnology Institute; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"Enterococcus hirae; Enterococcus; Enterococcus faecium; Microbiology; Biology; Enterococcus faecalis; Lactococcus; Lactococcus lactis; Genetics; Bacteria; Staphylococcus aureus; Antibiotics","score_opus":0.019840171037783808,"score_gpt":0.2915549544418808,"score_spread":0.271714783404097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144901667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.983959,0.0006709261,0.012208875,0.000086158805,0.000052537893,0.0000761271,0.0004496151,0.00009201958,0.0024047166],"genre_scores_gemma":[0.96273315,0.0007257037,0.03268942,0.00018944983,0.000025973803,0.00009992106,0.0019839285,0.00004780677,0.0015047517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994986,0.00006355901,0.000060405073,0.00017933757,0.00010678864,0.00009131773],"domain_scores_gemma":[0.9993787,0.000120189674,0.0002279162,0.00006971132,0.000112090755,0.00009133064],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000337211,0.00044902344,0.00032406088,0.000646438,0.00019491291,0.0005436217,0.0002488685,0.0005228982,0.00052278186],"category_scores_gemma":[0.0007347857,0.00021422798,0.0003151162,0.00040227675,0.00034853249,0.00025568932,0.0004953029,0.0004283836,0.0003400124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008432419,0.000025856049,0.005826662,0.00003897975,0.0000054851566,0.000108826374,0.000050957224,0.000019639465,0.9909616,0.000052282485,0.000035747762,0.0027896946],"study_design_scores_gemma":[0.000012134993,0.0005867814,0.08619821,0.000027447823,0.00008758452,0.00409602,0.0003693234,0.0016788355,0.9037555,0.00016795864,0.0029971637,0.000022989158],"about_ca_topic_score_codex":0.000708259,"about_ca_topic_score_gemma":0.0008750648,"teacher_disagreement_score":0.000708259,"about_ca_system_score_codex":0.00017959885,"about_ca_system_score_gemma":0.00019134025,"threshold_uncertainty_score":0.001783371},"labels":[],"label_agreement":null},{"id":"W2145116602","doi":"10.1128/jcm.00510-13","title":"Results of External Quality Assessment for Proviral DNA Testing of HIV Tropism in the Maraviroc Switch Collaborative Study","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"","keywords":"Maraviroc; External quality assessment; Tropism; Tissue tropism; Virology; Biology; CCR5 receptor antagonist; Population; Computational biology; Human immunodeficiency virus (HIV); Medicine; Virus; Immunology; Pathology","score_opus":0.10729990506690652,"score_gpt":0.44696785729644634,"score_spread":0.3396679522295398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145116602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95086944,0.0013556374,0.019167753,0.0006404815,0.0001599618,0.0024261493,0.0061967964,0.0004965452,0.018687254],"genre_scores_gemma":[0.985704,0.000092858645,0.008046427,0.00052159943,0.00006365718,0.0005913913,0.003518782,0.00014032569,0.0013209592],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.93467,0.024610784,0.0067986227,0.007778812,0.023514163,0.0026276298],"domain_scores_gemma":[0.91881096,0.024923366,0.013830669,0.0069676284,0.03258157,0.002885795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.062111247,0.0012527955,0.0008916864,0.0024127685,0.0008735625,0.0025540143,0.0011597775,0.0011729045,0.0017796431],"category_scores_gemma":[0.05746069,0.0004913688,0.0012301748,0.0017804167,0.0013229059,0.00060648104,0.0016853525,0.0009229678,0.0005966608],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006161914,0.0004704776,0.9545668,0.00022293978,0.00047819177,0.00042790946,0.0013661276,0.0010604525,0.015246187,0.0005105024,0.0021211326,0.017367413],"study_design_scores_gemma":[0.00026124873,0.0029345013,0.96183884,0.00009440467,0.00039564777,0.0005563455,0.00053807447,0.003969379,0.020397775,0.00027041318,0.008663969,0.00007938337],"about_ca_topic_score_codex":0.0048657362,"about_ca_topic_score_gemma":0.0035861575,"teacher_disagreement_score":0.062111247,"about_ca_system_score_codex":0.0014837472,"about_ca_system_score_gemma":0.0014238803,"threshold_uncertainty_score":0.3284796},"labels":[],"label_agreement":null},{"id":"W2145195450","doi":"10.1128/jcm.41.5.2113-2125.2003","title":"Rapid Identification of <i>Escherichia coli</i> Pathotypes by Virulence Gene Detection with DNA Microarrays","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":182,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Biotechnology Research Institute","funders":"","keywords":"Virulence; Biology; DNA microarray; Escherichia coli; Gene; Amplicon; Microarray; Microbiology; Virulence factor; Genetics; Strain (injury); Polymerase chain reaction; Gene expression","score_opus":0.018012674917775348,"score_gpt":0.3040675047491053,"score_spread":0.28605482983132996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145195450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8436943,0.0025455612,0.1442101,0.000747209,0.00011756373,0.00024119086,0.0035620194,0.0013092358,0.0035729166],"genre_scores_gemma":[0.72862244,0.002927497,0.25800374,0.0005265187,0.000074625896,0.0005221797,0.0045697647,0.00012703921,0.004626245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99970716,0.000050434082,0.000021329326,0.00009307156,0.00007261289,0.000055349185],"domain_scores_gemma":[0.9997559,0.000110357236,0.000046867124,0.000020703697,0.000040251154,0.000025909872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002688927,0.00061112794,0.00043768957,0.00039517565,0.00014792632,0.0004879301,0.0003049931,0.0005671408,0.0010638132],"category_scores_gemma":[0.0003971368,0.00025825694,0.00028449597,0.00027213802,0.00022291549,0.00038699602,0.00031220508,0.0007090204,0.00088972214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023890578,0.000006677337,0.00021637573,0.00001828215,0.0000014671477,0.0000095302075,0.0000059001404,0.000043406293,0.9985826,0.000025010764,0.000037472135,0.0010294298],"study_design_scores_gemma":[0.0000056136782,0.00017140356,0.0043227216,0.000008936562,0.000011835838,0.00015036965,0.000037536523,0.0018442599,0.9909045,0.00011857943,0.0024114954,0.000012718677],"about_ca_topic_score_codex":0.0002560118,"about_ca_topic_score_gemma":0.00042251614,"teacher_disagreement_score":0.0010638132,"about_ca_system_score_codex":0.000218225,"about_ca_system_score_gemma":0.00014496091,"threshold_uncertainty_score":0.0035588741},"labels":[],"label_agreement":null},{"id":"W2145366229","doi":"10.1128/jcm.01627-13","title":"Impact of Blood Volume, Tube Shaking, and Incubation Time on Reproducibility of QuantiFERON-TB Gold In-Tube Assay","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; Reproducibility; Internal medicine; Incubation; Tuberculosis; Incubation period; Gastroenterology; Whole blood; Latent tuberculosis; Mycobacterium tuberculosis; Immunology; Pathology; Chemistry; Chromatography","score_opus":0.06255648447287747,"score_gpt":0.4277628272385879,"score_spread":0.3652063427657104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145366229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"reproducibility","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"reproducibility","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.971651,0.004834537,0.020221103,0.00034274955,0.00052091497,0.0002707716,0.00032836528,0.000385823,0.0014447976],"genre_scores_gemma":[0.9814927,0.00049308914,0.01562782,0.00038725455,0.00023722136,0.00023921441,0.0006404158,0.00016723064,0.0007150831],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9471749,0.031954926,0.003712346,0.0058179814,0.010411682,0.00092814764],"domain_scores_gemma":[0.9415958,0.042676978,0.0051355865,0.005977993,0.0039050896,0.00070857577],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.025608875,0.0010795477,0.0010449343,0.0007522979,0.00058220566,0.0015819616,0.0009817564,0.0011008447,0.0006976809],"category_scores_gemma":[0.042834558,0.00084817933,0.00079424516,0.0008275321,0.0013433376,0.0005199141,0.0008804162,0.0007233222,0.0006030127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.038724627,0.0013852842,0.3508571,0.00062621175,0.0013219257,0.0007087557,0.0032625434,0.005726722,0.48869273,0.0003300606,0.001275973,0.10708816],"study_design_scores_gemma":[0.0005135939,0.026149929,0.5045354,0.00017130893,0.001774768,0.0028958619,0.00084429036,0.022061361,0.43571645,0.00049558235,0.0045639775,0.0002773822],"about_ca_topic_score_codex":0.0015081788,"about_ca_topic_score_gemma":0.0012746255,"teacher_disagreement_score":0.9743911,"about_ca_system_score_codex":0.0005663991,"about_ca_system_score_gemma":0.0004874346,"threshold_uncertainty_score":0.13543433},"labels":[],"label_agreement":null},{"id":"W2145417538","doi":"10.1128/jcm.41.6.2779-2782.2003","title":"Soft Tissue Infection Caused by a Novel Pigmented, Rapidly Growing <i>Mycobacterium</i> Species","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Canada","funders":"","keywords":"Nontuberculous mycobacteria; Mycobacterium Infections; Mycobacterium; Biology; Mycobacterium avium complex; Microbiology; Soft tissue; Pathology; Medicine; Bacteria; Genetics","score_opus":0.048107014111245114,"score_gpt":0.3617723911529943,"score_spread":0.3136653770417492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145417538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98981375,0.0018532845,0.0019001855,0.0004881912,0.000082378654,0.000043704847,0.00004990774,0.00006664117,0.005701973],"genre_scores_gemma":[0.99752945,0.00054089964,0.0010226663,0.00023067294,0.00013960846,0.000008332614,0.00002272595,0.000009104213,0.0004965793],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99971586,0.000058799964,0.00003646435,0.0000561886,0.000034499728,0.0000982549],"domain_scores_gemma":[0.99925524,0.0002810263,0.0002425608,0.00005959534,0.000027862785,0.00013375423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023530134,0.0011667146,0.00045711,0.00048188207,0.000937199,0.00085765304,0.00033218818,0.0016477533,0.0020936232],"category_scores_gemma":[0.0014786568,0.0004818426,0.00041329127,0.0003079767,0.00091757136,0.0007982,0.00053314096,0.0011378266,0.0005693009],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017959558,0.00008003811,0.023031222,0.00009636409,0.000013336581,0.9497948,0.00030866577,0.00006351941,0.022829734,0.00026073522,0.00028986402,0.0030520167],"study_design_scores_gemma":[0.000022071636,0.00023201054,0.0071204444,0.000015028957,0.000017795659,0.98890406,0.000119221564,0.0001616001,0.0026924722,0.00006945297,0.00063656335,0.000009242344],"about_ca_topic_score_codex":0.00053531653,"about_ca_topic_score_gemma":0.0005649937,"teacher_disagreement_score":0.0020936232,"about_ca_system_score_codex":0.00025895375,"about_ca_system_score_gemma":0.00020134388,"threshold_uncertainty_score":0.007003844},"labels":[],"label_agreement":null},{"id":"W2145584920","doi":"10.1128/jcm.01956-06","title":"Characteristics of the <i>m</i> 2000 Automated Sample Preparation and Multiplex Real-Time PCR System for Detection of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Concordance; Multiplex; Chlamydiaceae; Chlamydiales; Virology; Real-time polymerase chain reaction; Microbiology; Biology; Medicine; Internal medicine; Genetics; Gene","score_opus":0.023002248573914398,"score_gpt":0.3421840454579358,"score_spread":0.3191817968840214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145584920","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48335996,0.007437507,0.46434438,0.0013397117,0.00057897595,0.011138101,0.00658943,0.010568422,0.014643533],"genre_scores_gemma":[0.502662,0.0021254136,0.4607815,0.0017802167,0.0003237193,0.011899958,0.010718045,0.0013049011,0.0084042745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.993761,0.0014275969,0.00060371717,0.0012033895,0.0026923884,0.0003119092],"domain_scores_gemma":[0.9929836,0.0037342107,0.0009420544,0.00047543805,0.0014276961,0.00043703543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0053854412,0.0016945895,0.0013031462,0.0016670054,0.00058366917,0.0014147223,0.0014435167,0.0015910865,0.0032187293],"category_scores_gemma":[0.007275227,0.0011001403,0.00064572616,0.0010837178,0.0005053284,0.0007935816,0.0005144643,0.00091652764,0.0025083725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056529325,0.0012745344,0.06393154,0.0010504541,0.00015039837,0.0007139382,0.00040112154,0.004595124,0.78472805,0.00092775834,0.0043777605,0.13219628],"study_design_scores_gemma":[0.0011423279,0.016605658,0.18018998,0.0002472779,0.0006903499,0.010953998,0.00021788864,0.074056,0.6648494,0.001243018,0.049283195,0.0005208719],"about_ca_topic_score_codex":0.0012059871,"about_ca_topic_score_gemma":0.0013430275,"teacher_disagreement_score":0.0053854412,"about_ca_system_score_codex":0.0005938596,"about_ca_system_score_gemma":0.0011138184,"threshold_uncertainty_score":0.028481305},"labels":[],"label_agreement":null},{"id":"W2145620204","doi":"10.1128/jcm.41.12.5473-5477.2003","title":"Evaluation of the INNO-LiPA HBV Genotyping Assay for Determination of Hepatitis B Virus Genotype","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Genotyping; Genotype; Virology; Amplicon; Hepatitis B virus; Biology; Typing; Polymerase chain reaction; Concordance; Orthohepadnavirus; Hepadnaviridae; Virus; Genetics; Gene","score_opus":0.11982966025877867,"score_gpt":0.42568640386042245,"score_spread":0.3058567436016438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145620204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8894905,0.014202051,0.07336796,0.00050761615,0.00033020062,0.0012925424,0.0029849196,0.00086397014,0.016960168],"genre_scores_gemma":[0.91411585,0.001276853,0.07735935,0.00025515098,0.000054517124,0.0006861699,0.003404175,0.000085004394,0.0027629663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.983634,0.009013579,0.0010306482,0.0015272102,0.0043310714,0.00046345146],"domain_scores_gemma":[0.9946648,0.002661118,0.00072020426,0.00043137505,0.0011819062,0.0003405789],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009614449,0.0010621536,0.00080250023,0.0025535198,0.0003489095,0.0007670987,0.00084561604,0.0010114845,0.0013430344],"category_scores_gemma":[0.009941172,0.0004719106,0.00037504992,0.001155308,0.00058119994,0.0005244471,0.00056464213,0.00053283176,0.0009682033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0083719725,0.0013207647,0.33014286,0.000839381,0.00034715625,0.000696249,0.00062373036,0.0014045248,0.53320664,0.0008336618,0.0018473215,0.120365776],"study_design_scores_gemma":[0.0007286373,0.014653908,0.5523008,0.000328695,0.00074498507,0.009600052,0.00030875418,0.026137508,0.373892,0.000588608,0.020557739,0.00015825604],"about_ca_topic_score_codex":0.0009488907,"about_ca_topic_score_gemma":0.0020425557,"teacher_disagreement_score":0.009614449,"about_ca_system_score_codex":0.00047862908,"about_ca_system_score_gemma":0.00048976584,"threshold_uncertainty_score":0.050846696},"labels":[],"label_agreement":null},{"id":"W2145631727","doi":"10.1128/jcm.42.12.5689-5697.2004","title":"Clinical and Laboratory Features of <i>Mycobacterium porcinum</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Microbiology; Mycobacterium fortuitum; Imipenem; Biology; Cefoxitin; Acinetobacter calcoaceticus; Mycobacterium; Acinetobacter; Bacteria; Antibiotics; Genetics; Antibiotic resistance; Staphylococcus aureus","score_opus":0.03405605267575529,"score_gpt":0.3920819963801211,"score_spread":0.3580259437043658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145631727","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913873,0.0005245703,0.00042585935,0.00031183852,0.000023279898,0.00008285893,0.0003081979,0.000049707938,0.006886331],"genre_scores_gemma":[0.99906033,0.00009610983,0.00017947069,0.00010013035,0.000027709526,0.000010281421,0.00019981097,0.000004558908,0.00032151295],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99972755,0.000040851628,0.000020303061,0.00006946299,0.000043296637,0.00009855336],"domain_scores_gemma":[0.99922085,0.00010036262,0.00020227167,0.00003927368,0.0001168029,0.0003203818],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019495825,0.000773912,0.0003357972,0.0005352872,0.0004681176,0.00036534385,0.00035004824,0.00070370047,0.0019062436],"category_scores_gemma":[0.0015965786,0.00021795841,0.00018953497,0.00038485942,0.0006188449,0.00038164464,0.0003485516,0.00048372895,0.00049330987],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013327674,0.0004749326,0.806686,0.0001823423,0.000043787695,0.13853858,0.0006277864,0.00029998866,0.039907932,0.00025862243,0.0020557574,0.00959157],"study_design_scores_gemma":[0.000060369606,0.0017653323,0.7162742,0.000062645166,0.00003939092,0.27485514,0.00054089614,0.00054164225,0.0027413296,0.00014484099,0.0029417928,0.000032417975],"about_ca_topic_score_codex":0.0026523,"about_ca_topic_score_gemma":0.0020252215,"teacher_disagreement_score":0.0026523,"about_ca_system_score_codex":0.00033790403,"about_ca_system_score_gemma":0.00027440235,"threshold_uncertainty_score":0.0063770413},"labels":[],"label_agreement":null},{"id":"W2145846724","doi":"10.1128/jcm.01424-08","title":"Multilocus Sequence Types Associated with Neonatal Group B Streptococcal Sepsis and Meningitis in Canada","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":188,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; University of Calgary; Michigan State University","keywords":"Meningitis; Multilocus sequence typing; Streptococcus agalactiae; Neonatal sepsis; Group B; Neonatal meningitis; Sepsis; Sequence (biology); Microbiology; Streptococcaceae; Biology; Group A; Medicine; Streptococcus; Immunology; Genetics; Bacteria; Pediatrics; Internal medicine; Antibiotics; Genotype; Gene","score_opus":0.029957099071138072,"score_gpt":0.32965521741575926,"score_spread":0.2996981183446212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145846724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98179644,0.003613515,0.0003564388,0.00085472775,0.00006513482,0.00010767672,0.0060962285,0.000035685425,0.0070740688],"genre_scores_gemma":[0.993533,0.0020600196,0.00068349997,0.0002125289,0.000011917135,0.000021312695,0.0022576943,0.000009005568,0.0012109226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989428,0.00005095389,0.00007958827,0.000113925176,0.0004900957,0.0003226118],"domain_scores_gemma":[0.9974111,0.00009025176,0.0003665396,0.000034636632,0.0013922461,0.0007052856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047609952,0.00034584865,0.00032151563,0.0022733957,0.0021596034,0.0009076539,0.0009207763,0.00033077557,0.0016106992],"category_scores_gemma":[0.0023676283,0.00029522355,0.00035713607,0.0045841164,0.0005200734,0.00021730395,0.0009327689,0.0005879018,0.00013051268],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013348935,0.00002882997,0.97839284,0.000098487275,0.00004625295,0.000901283,0.0007129184,0.0002750176,0.0009587631,0.00029642237,0.0023835546,0.015772292],"study_design_scores_gemma":[0.000011383895,0.000030502968,0.99551207,0.00006650653,0.000018918332,0.0005031181,0.001046552,0.00037466176,0.00017007267,0.000044572516,0.0022051246,0.000016600032],"about_ca_topic_score_codex":0.9944326,"about_ca_topic_score_gemma":0.9955546,"teacher_disagreement_score":0.030248368,"about_ca_system_score_codex":0.030248368,"about_ca_system_score_gemma":0.0469462,"threshold_uncertainty_score":0.2194683},"labels":[],"label_agreement":null},{"id":"W2145981337","doi":"10.1128/jcm.38.5.1869-1875.2000","title":"Molecular Differentiation of Seven <i>Malassezia</i> Species","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Malassezia; Biology; Internal transcribed spacer; genomic DNA; Restriction enzyme; Polymerase chain reaction; Ribosomal DNA; Ribosomal RNA; Genetics; Molecular biology; Gene; EcoRI; Microbiology; Phylogenetics","score_opus":0.027862255114870536,"score_gpt":0.35024401939083777,"score_spread":0.3223817642759672,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145981337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98631895,0.0014462037,0.01038627,0.00012044039,0.00002793802,0.00014001862,0.00048776943,0.00012728988,0.00094508694],"genre_scores_gemma":[0.9324461,0.0015711687,0.06189574,0.00012839815,0.00002330528,0.00016293177,0.0025615476,0.000032417454,0.0011784114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99967,0.000037651032,0.000045790483,0.00010045055,0.00008617963,0.000059912072],"domain_scores_gemma":[0.9995364,0.0000966886,0.00012931616,0.000025500121,0.00013562548,0.000076508935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027627035,0.000367341,0.00041084545,0.0008063951,0.00020903851,0.0005189728,0.00031755812,0.00028903628,0.00069205085],"category_scores_gemma":[0.00073013204,0.00017042222,0.00025070828,0.0003720059,0.00019101633,0.0003174964,0.00030700315,0.0003326068,0.0003546733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002764387,0.000060689104,0.02764242,0.00012266121,0.000015040642,0.00008947892,0.00011341451,0.00006859672,0.9494892,0.0001058461,0.000073397765,0.02194286],"study_design_scores_gemma":[0.000076006945,0.0018892516,0.27439603,0.00010298775,0.00017353488,0.003370804,0.00062174606,0.0034077514,0.70565766,0.00037994195,0.00987415,0.00005004772],"about_ca_topic_score_codex":0.0009026629,"about_ca_topic_score_gemma":0.0010634976,"teacher_disagreement_score":0.0009026629,"about_ca_system_score_codex":0.00028200395,"about_ca_system_score_gemma":0.00022045727,"threshold_uncertainty_score":0.002315104},"labels":[],"label_agreement":null},{"id":"W2146064229","doi":"10.1128/jcm.00031-15","title":"Isolation and Characterization of Porcine Deltacoronavirus from Pigs with Diarrhea in the United States","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":218,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Strain (injury); Virology; Isolation (microbiology); Diarrhea; Cell culture; Gene; Microbiology; Porcine epidemic diarrhea virus; Virus; Genetics; Medicine","score_opus":0.07873614368887875,"score_gpt":0.31953153816094093,"score_spread":0.24079539447206216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146064229","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945247,0.00062467094,0.0010419203,0.00012348454,0.000042518794,0.00008986494,0.0015631735,0.000013294502,0.001976302],"genre_scores_gemma":[0.97960424,0.0011230514,0.004997107,0.00056473695,0.0000372869,0.000078745376,0.011383373,0.00001549112,0.002195978],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998925,0.000010808232,0.000015763182,0.00003197695,0.000024784309,0.000024251569],"domain_scores_gemma":[0.9998573,0.000018952533,0.000023387367,0.0000120042305,0.000050871713,0.000037474692],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016406308,0.00029631483,0.00022089768,0.00036406075,0.00037249317,0.0002906789,0.00010642745,0.00029941788,0.00058976276],"category_scores_gemma":[0.00018911311,0.00012193018,0.00028794078,0.00045457674,0.00011781085,0.00018316317,0.00023326038,0.00026422375,0.00030116196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019145074,0.00017191627,0.1429743,0.00013124755,0.000034837587,0.0012471334,0.00057286513,0.00017185118,0.840107,0.000081115766,0.0007082581,0.013608019],"study_design_scores_gemma":[0.00003363634,0.0010338866,0.88465625,0.000075889206,0.00009751916,0.0047079157,0.0017697492,0.0011050253,0.08995939,0.00006344422,0.016470876,0.000026426484],"about_ca_topic_score_codex":0.0043303915,"about_ca_topic_score_gemma":0.0065800115,"teacher_disagreement_score":0.0043303915,"about_ca_system_score_codex":0.00018398797,"about_ca_system_score_gemma":0.0003294497,"threshold_uncertainty_score":0.008610368},"labels":[],"label_agreement":null},{"id":"W2146143720","doi":"10.1128/jcm.05084-11","title":"International Circumpolar Surveillance Interlaboratory Quality Control Program for Serotyping Haemophilus influenzae and Serogrouping Neisseria meningitidis, 2005 to 2009","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ste. Anne's Hospital; Provincial Laboratory of Public Health; Public Health Agency of Canada","funders":"","keywords":"Neisseria meningitidis; Serotype; Haemophilus influenzae; Concordance; Microbiology; Circumpolar star; Population; Virology; Biology; Medicine; Environmental health; Bacteria; Internal medicine; Genetics; Antibiotics","score_opus":0.08083766168868091,"score_gpt":0.4220358772070328,"score_spread":0.3411982155183519,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146143720","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.31234193,0.028350748,0.054625187,0.005894258,0.0022954948,0.020903878,0.35072258,0.0033889126,0.221477],"genre_scores_gemma":[0.36749122,0.013421383,0.10045634,0.004949849,0.00057758694,0.0071272044,0.44754562,0.00041621315,0.058014546],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9950754,0.0011902299,0.0004983159,0.0007994164,0.0020518028,0.0003847794],"domain_scores_gemma":[0.9838734,0.0004172504,0.0027358276,0.0008070176,0.010955915,0.0012106361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0106961895,0.0016081922,0.0005662828,0.005367869,0.0013235126,0.001545896,0.0015584744,0.00043105992,0.0034100844],"category_scores_gemma":[0.005882636,0.00042588724,0.00042171316,0.004925099,0.00050009484,0.00046080636,0.0011700088,0.00079250394,0.0010966402],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001268264,0.0006145945,0.663256,0.0015483061,0.00032922422,0.0003463473,0.0024925822,0.0018890996,0.009676397,0.001694815,0.16082527,0.1560591],"study_design_scores_gemma":[0.00008652406,0.00037494785,0.85999554,0.00068915234,0.00014416779,0.00021530037,0.0006101995,0.0013204842,0.003724558,0.00010363507,0.13270058,0.000034983226],"about_ca_topic_score_codex":0.30195576,"about_ca_topic_score_gemma":0.26380205,"teacher_disagreement_score":0.30195576,"about_ca_system_score_codex":0.00520348,"about_ca_system_score_gemma":0.0099762725,"threshold_uncertainty_score":0.6003964},"labels":[],"label_agreement":null},{"id":"W2146249521","doi":"10.1128/jcm.42.8.3441-3448.2004","title":"High-Resolution Genotyping of<i>Campylobacter upsaliensis</i>Strains Originating from Three Continents","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Biology; Serotype; Subspecies; Genotype; Genotyping; Intergenic region; Ribosomal RNA; Microbiology; Genetics; Virology; Genome; Gene; Zoology","score_opus":0.05154206485300101,"score_gpt":0.3086809761238053,"score_spread":0.2571389112708043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146249521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993351,0.00005969168,0.00012481528,0.000008825422,0.0000019539677,0.0000065433032,0.00014903229,0.0000036295216,0.00031033345],"genre_scores_gemma":[0.9974038,0.00007402029,0.0010706005,0.000044371132,0.0000028496067,0.000014462653,0.0011413002,0.0000037348827,0.00024486208],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99960893,0.00007234836,0.0000406234,0.00008850099,0.00009839001,0.000091186215],"domain_scores_gemma":[0.9995772,0.00006993856,0.000112167356,0.00003902308,0.00012977066,0.00007195262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035643723,0.0003245825,0.0002786315,0.0007293938,0.00038186592,0.00045509482,0.00021608226,0.0003018933,0.00044448863],"category_scores_gemma":[0.00064172765,0.00017339461,0.00024964445,0.00060967647,0.000211681,0.000091896836,0.00041474606,0.0001737922,0.00018618119],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003297204,0.000077424615,0.6072054,0.00008364574,0.00009688817,0.00037539168,0.0014043914,0.00037394778,0.3744708,0.00004824553,0.00023404392,0.015300154],"study_design_scores_gemma":[0.000006985439,0.00013114029,0.9867698,0.0000145009835,0.000036263853,0.00052127626,0.0006505665,0.00019525168,0.010322486,0.0000076157853,0.0013375346,0.000006574672],"about_ca_topic_score_codex":0.009519796,"about_ca_topic_score_gemma":0.01106824,"teacher_disagreement_score":0.009519796,"about_ca_system_score_codex":0.0002747644,"about_ca_system_score_gemma":0.0002031649,"threshold_uncertainty_score":0.018928766},"labels":[],"label_agreement":null},{"id":"W2146264981","doi":"10.1128/jcm.01309-07","title":"Novel Multiplex PCR Assay for Simultaneous Identification of Community-Associated Methicillin-Resistant <i>Staphylococcus aureus</i> Strains USA300 and USA400 and Detection of <i>mecA</i> and Panton-Valentine Leukocidin Genes, with Discrimination of <i>Staphylococcus aureus</i> from Coagulase-Negative Staphylococci","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Staphylococcus aureus; Leukocidin; Panton–Valentine leukocidin; Microbiology; Multiplex; Biology; Multiplex polymerase chain reaction; Staphylococcal infections; Micrococcaceae; Coagulase; Methicillin-resistant Staphylococcus aureus; Virology; Polymerase chain reaction; Bacteria; Gene; Staphylococcus; Genetics","score_opus":0.04893954469295651,"score_gpt":0.3427170446724739,"score_spread":0.29377749997951735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146264981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5836203,0.0054513044,0.39955398,0.00066352676,0.000826632,0.0010330984,0.0012764407,0.0029274095,0.004647263],"genre_scores_gemma":[0.56746525,0.0019265397,0.4210603,0.0005376522,0.00023238471,0.0007386664,0.0017119106,0.000069037545,0.006258208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984547,0.00023999374,0.00012623332,0.0005264244,0.00051178405,0.00014076573],"domain_scores_gemma":[0.9988059,0.00034151645,0.00026390015,0.00007375808,0.0003357824,0.00017925583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010103529,0.001132158,0.0007480768,0.0010907141,0.00019833884,0.0006953494,0.0008996067,0.001066452,0.0010088048],"category_scores_gemma":[0.0013853975,0.00060312764,0.0004171517,0.0003803625,0.00034040012,0.0006646411,0.00052934675,0.0010126232,0.0007447217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026727756,0.00023883233,0.0019759105,0.00010520289,0.000022491846,0.00014393483,0.00006671553,0.0002889899,0.97377455,0.0002010069,0.0003422084,0.022572907],"study_design_scores_gemma":[0.00014227185,0.0021834304,0.0049885074,0.00004723093,0.00012599697,0.004341392,0.00008743084,0.018389015,0.9612461,0.00027353305,0.0080824215,0.000092628135],"about_ca_topic_score_codex":0.0003415636,"about_ca_topic_score_gemma":0.0006014337,"teacher_disagreement_score":0.001132158,"about_ca_system_score_codex":0.00051457144,"about_ca_system_score_gemma":0.00038270795,"threshold_uncertainty_score":0.0053433776},"labels":[],"label_agreement":null},{"id":"W2146399501","doi":"10.1128/jcm.43.6.2987-2988.2005","title":"Species-Level Molecular Identification of Invasive “ <i>Streptococcus milleri</i> ” Group Clinical Isolates by Nucleic Acid Sequencing in a Centralized Regional Microbiology Laboratory","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"","keywords":"Streptococcus milleri; Microbiology; Biology; Streptococcus; Identification (biology); Clinical microbiology; Nucleic acid; Bacteriology; Bacteroidaceae; Bacteria; Genetics; Ecology","score_opus":0.06355575418743652,"score_gpt":0.36540188165307763,"score_spread":0.3018461274656411,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146399501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849417,0.0008670747,0.011453172,0.00021264877,0.000026733978,0.00028243507,0.00057955424,0.00012165176,0.0015149498],"genre_scores_gemma":[0.9691362,0.0006955598,0.02753037,0.00013134186,0.000035230132,0.00010016405,0.0015023898,0.000029663264,0.00083910726],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99848276,0.0004384174,0.00014248662,0.00035280664,0.0004623052,0.00012119699],"domain_scores_gemma":[0.9993197,0.00012632267,0.00015489456,0.00008786626,0.00020259169,0.00010870137],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001245495,0.00030662346,0.0006320161,0.00082328374,0.0003537403,0.00060285063,0.00040150745,0.00038722003,0.00057125714],"category_scores_gemma":[0.00193089,0.00025830866,0.000296847,0.0005340068,0.00036618317,0.00025405755,0.00035022167,0.0004024622,0.00051798986],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008200338,0.0002800883,0.10745828,0.00018710413,0.00006714654,0.00047249036,0.0008929394,0.0006824328,0.85981816,0.00021128407,0.000542759,0.028567314],"study_design_scores_gemma":[0.00013327108,0.003750663,0.45136648,0.00017717824,0.00045245345,0.004106689,0.0021138173,0.0065950006,0.5230033,0.0004075498,0.007823691,0.00006987885],"about_ca_topic_score_codex":0.0033062603,"about_ca_topic_score_gemma":0.0058512446,"teacher_disagreement_score":0.0033062603,"about_ca_system_score_codex":0.0004579046,"about_ca_system_score_gemma":0.0011138624,"threshold_uncertainty_score":0.0065869093},"labels":[],"label_agreement":null},{"id":"W2146498622","doi":"10.1128/jcm.01694-06","title":"Molecular Epidemiology of Metallo-β-Lactamase-Producing <i>Pseudomonas aeruginosa</i> in the Calgary Health Region: Emergence of VIM-2-Producing Isolates","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"Calgary Laboratory Services","keywords":"Pseudomonas aeruginosa; Microbiology; Biology; Molecular epidemiology; Epidemiology; Pseudomonadaceae; Bacteria; Medicine; Genetics; Genotype; Gene; Pathology","score_opus":0.040686040691000305,"score_gpt":0.350571758044121,"score_spread":0.3098857173531207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146498622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993938,0.0001871345,0.000068340494,0.000038109287,0.0000018127374,0.000019096111,0.00014617437,0.000004099405,0.00014143488],"genre_scores_gemma":[0.9988833,0.00024700863,0.00024902954,0.000102587925,0.00000805554,0.000012607373,0.00039738926,0.0000029360906,0.00009700925],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991906,0.00009782527,0.00007441246,0.00025526853,0.00016868745,0.00021316427],"domain_scores_gemma":[0.99842465,0.00018753804,0.000672364,0.000056583558,0.00028231437,0.0003765326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044053423,0.0004265625,0.00039418406,0.001752833,0.0005668768,0.0013043022,0.0008313939,0.0006902556,0.00060691824],"category_scores_gemma":[0.0012598742,0.00040067086,0.0002414012,0.0018693382,0.0009497839,0.00043976077,0.0007043117,0.0006321465,0.00014481887],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007320381,0.00003656159,0.988008,0.000042755713,0.000029561645,0.0004366616,0.00069520704,0.0001764337,0.008090661,0.00001889071,0.00008349603,0.0023084257],"study_design_scores_gemma":[0.000003521002,0.00007711658,0.99889034,0.0000073264832,0.0000074669247,0.00022322788,0.00042102858,0.00006994558,0.00022078399,0.0000023373116,0.00007359933,0.0000034007749],"about_ca_topic_score_codex":0.1896238,"about_ca_topic_score_gemma":0.1510749,"teacher_disagreement_score":0.81037617,"about_ca_system_score_codex":0.0027713885,"about_ca_system_score_gemma":0.0017654223,"threshold_uncertainty_score":0.37704015},"labels":[],"label_agreement":null},{"id":"W2146853731","doi":"10.1128/jcm.40.1.68-74.2002","title":"Emergence of Penicillin-Nonsusceptible <i>Streptococcus pneumoniae</i> Invasive Clones in Canada","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Pulsed-field gel electrophoresis; Penicillin; clone (Java method); Serotype; Microbiology; Biology; Streptococcus pneumoniae; Virology; Antibiotic resistance; Antibiotics; Genotype; Gene; Genetics","score_opus":0.058241331337992884,"score_gpt":0.32889322822209455,"score_spread":0.2706518968841017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146853731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690104,0.0006169745,0.00021856536,0.00013546748,0.000006239216,0.000032045526,0.0004935203,0.000024009734,0.0015720829],"genre_scores_gemma":[0.9976349,0.0005303903,0.0005024799,0.00013540698,0.000004079693,0.000009139313,0.0005393908,0.000007651913,0.000636459],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990615,0.000043147225,0.00003904981,0.0001583872,0.00040466015,0.00029318992],"domain_scores_gemma":[0.99798155,0.0000995637,0.00034869066,0.000045694313,0.0011032376,0.0004212266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003189782,0.00040911578,0.00036948395,0.0015527968,0.0022330254,0.0015192485,0.0006903086,0.0004880525,0.00096789567],"category_scores_gemma":[0.0015161427,0.00031042044,0.00029703524,0.0023728972,0.0007474433,0.00028052749,0.0005990641,0.00061098963,0.00011572739],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022163587,0.000040415354,0.9644127,0.000066398694,0.000042272564,0.0009757947,0.0016188984,0.00026802116,0.0083873635,0.00015384043,0.0008527602,0.022960084],"study_design_scores_gemma":[0.0000130824465,0.00009115924,0.9923274,0.00003628029,0.00003619065,0.00081679254,0.0014578423,0.00054531463,0.00196314,0.000023961862,0.0026651844,0.000023643026],"about_ca_topic_score_codex":0.9793706,"about_ca_topic_score_gemma":0.98676366,"teacher_disagreement_score":0.020629406,"about_ca_system_score_codex":0.018474514,"about_ca_system_score_gemma":0.019249795,"threshold_uncertainty_score":0.13404262},"labels":[],"label_agreement":null},{"id":"W2147172531","doi":"10.1128/jcm.43.6.2844-2849.2005","title":"Community-Wide Outbreaks of Clonally Related CTX-M-14 β-Lactamase-Producing <i>Escherichia coli</i> Strains in the Calgary Health Region","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary; Calgary Laboratory Services","funders":"University of Calgary","keywords":"Pulsed-field gel electrophoresis; Biology; Escherichia coli; Microbiology; Molecular epidemiology; Outbreak; Enterobacteriaceae; Genotype; Restriction enzyme; DNA profiling; Genetics; Virology; Gene; DNA","score_opus":0.03498224818688547,"score_gpt":0.33542260747277697,"score_spread":0.3004403592858915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147172531","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961746,0.00016111517,0.000049332637,0.000025393947,0.0000020358439,0.0000071699706,0.000022887172,0.000002567086,0.00011203064],"genre_scores_gemma":[0.9991604,0.00035534857,0.0001858919,0.00007899366,0.000011964262,0.0000052742275,0.000121512174,0.0000011952202,0.0000793897],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994716,0.00010381625,0.000046631758,0.00011671061,0.00012475997,0.00013656661],"domain_scores_gemma":[0.9990416,0.00015378244,0.00044484,0.00005497367,0.00014864594,0.00015620104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005621741,0.00023275227,0.00024735005,0.0008359959,0.00066045753,0.00052227883,0.00039913337,0.00042507867,0.00077246566],"category_scores_gemma":[0.0012842593,0.00025604694,0.00011330415,0.00085579336,0.0006932876,0.00029356507,0.0005943264,0.00041231382,0.00012036972],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001020922,0.000065197884,0.98520005,0.000054272696,0.00003361417,0.00089424633,0.00066989247,0.000068077694,0.005297949,0.000017732253,0.0001762838,0.0074205548],"study_design_scores_gemma":[0.000009161701,0.00010464873,0.9969592,0.000018099061,0.000014054394,0.0014235511,0.00074163766,0.00007786682,0.00046401712,0.000013293457,0.00017027183,0.0000041548556],"about_ca_topic_score_codex":0.04052777,"about_ca_topic_score_gemma":0.040759057,"teacher_disagreement_score":0.95947224,"about_ca_system_score_codex":0.0012304703,"about_ca_system_score_gemma":0.0010238854,"threshold_uncertainty_score":0.08058375},"labels":[],"label_agreement":null},{"id":"W2147478688","doi":"10.1128/jcm.38.8.2846-2852.2000","title":"Evaluation of <i>recA</i> Sequences for Identification of <i>Mycobacterium</i> Species","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Health Canada","funders":"","keywords":"Biology; 16S ribosomal RNA; Mycobacterium kansasii; Microbiology; Genetics; Mycobacterium; Mycobacterium leprae; GenBank; Sequence analysis; Gene; Ribosomal RNA; Mycobacterium tuberculosis; Mycobacterium tuberculosis complex; Bacteria; Tuberculosis","score_opus":0.12766851411935304,"score_gpt":0.4391301315607358,"score_spread":0.3114616174413828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147478688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866759,0.001574719,0.009203199,0.00010160215,0.000040690862,0.00010956118,0.00074196636,0.00007395944,0.0014783371],"genre_scores_gemma":[0.9368828,0.0014314605,0.057279747,0.00011219851,0.000030993324,0.00018011277,0.0030384148,0.00007526089,0.00096894783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863786,0.00045236634,0.00021165084,0.00024935996,0.0003131074,0.00013567632],"domain_scores_gemma":[0.99777895,0.0006070059,0.00057597214,0.0001595173,0.00069428206,0.00018426316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009907188,0.0005866748,0.0005054055,0.0012964928,0.00032387493,0.00061060104,0.0004511605,0.0006045325,0.00074238045],"category_scores_gemma":[0.0027849625,0.0002889068,0.00051500223,0.0007861437,0.0002634761,0.00040802406,0.00035551417,0.00033770726,0.0005880472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019075189,0.0000620547,0.005494158,0.00014217367,0.000017714892,0.00013388012,0.00011029612,0.000114093295,0.98893154,0.000040559582,0.000030827807,0.004732009],"study_design_scores_gemma":[0.000028463055,0.0018301037,0.09099378,0.00011123193,0.00021788728,0.0021505686,0.00048708092,0.0038966585,0.8951557,0.00013153379,0.004960998,0.00003590458],"about_ca_topic_score_codex":0.0007151548,"about_ca_topic_score_gemma":0.0009159938,"teacher_disagreement_score":0.0012964928,"about_ca_system_score_codex":0.00019154415,"about_ca_system_score_gemma":0.00032118076,"threshold_uncertainty_score":0.0052394867},"labels":[],"label_agreement":null},{"id":"W2147683631","doi":"10.1128/jcm.01677-09","title":"Caspofungin Etest Endpoint for <i>Aspergillus</i> Isolates Shows Poor Agreement with the Reference Minimum Effective Concentration","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Etest; Caspofungin; Broth microdilution; Agar dilution; Agar; Microbiology; Aspergillus fumigatus; Aspergillus flavus; Serial dilution; Aspergillus niger; Echinocandin; Aspergillus; Aspergillus terreus; Biology; Medicine; Antifungal; Minimum inhibitory concentration; Amphotericin B; Food science; Bacteria; Antimicrobial; Pathology","score_opus":0.03357997742727065,"score_gpt":0.35489107994646224,"score_spread":0.3213111025191916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147683631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8902062,0.007564843,0.09035344,0.0007016187,0.00027937262,0.00023742857,0.0025918288,0.0012375806,0.0068276445],"genre_scores_gemma":[0.97488564,0.0006038743,0.021669718,0.00034533662,0.000035577028,0.000057953388,0.0017762112,0.000094061,0.0005316428],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9801916,0.007324954,0.0037211108,0.0024017966,0.0059377872,0.00042277246],"domain_scores_gemma":[0.98000985,0.008929901,0.004046824,0.0031102316,0.0036233603,0.00027980356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009618101,0.00071316573,0.00096158247,0.00061950734,0.00021424555,0.0011056998,0.00080825883,0.0009074398,0.0006669266],"category_scores_gemma":[0.014271459,0.00028369963,0.0005717114,0.0007595338,0.000567926,0.000585456,0.000812672,0.0007903452,0.0010464191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016731776,0.000281397,0.17784262,0.0007822269,0.00042368108,0.00024921633,0.0005711053,0.003653237,0.724645,0.00042683995,0.0017943182,0.08765704],"study_design_scores_gemma":[0.000047943686,0.004321647,0.30213952,0.00017335867,0.00029740282,0.0020204105,0.00039695782,0.013965029,0.66766745,0.00081364205,0.008066573,0.00009000766],"about_ca_topic_score_codex":0.0012230579,"about_ca_topic_score_gemma":0.0016340992,"teacher_disagreement_score":0.009618101,"about_ca_system_score_codex":0.0005086164,"about_ca_system_score_gemma":0.00025648432,"threshold_uncertainty_score":0.050866008},"labels":[],"label_agreement":null},{"id":"W2147685256","doi":"10.1128/jcm.42.6.2718-2723.2004","title":"DNA Sequence Analysis of the PorB Protein of Nonserotypeable Serogroup C ET-15 Meningococci Suggests a Potential Mutational Hot Spot on Their Serotype Antigens","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Health Canada","keywords":"Biology; Serotype; Neisseria meningitidis; Virology; Microbiology; Epitope; Nucleic acid sequence; Point mutation; Sequence analysis; Gene; Antigen; Nonsynonymous substitution; Meningococcal disease; Mutation; Genetics; Bacteria; Genome","score_opus":0.04272486708929401,"score_gpt":0.3395153810703919,"score_spread":0.2967905139810979,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147685256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991209,0.0000891803,0.0003214472,0.0000133113845,0.0000026798357,0.000006550728,0.00015776374,0.0000034988227,0.00028478834],"genre_scores_gemma":[0.9982571,0.00009419955,0.0008371541,0.000019677813,0.000004081397,0.0000046781533,0.00036920683,0.0000029183927,0.00041102222],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999008,0.000014807981,0.000013025792,0.000024000132,0.000026156105,0.000021218657],"domain_scores_gemma":[0.9996113,0.00011673282,0.0001383958,0.000027739885,0.00004513935,0.000060763654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010806008,0.00025111422,0.00011684991,0.00043933568,0.00012750288,0.00018006061,0.00007632254,0.00017435936,0.0015678424],"category_scores_gemma":[0.0005156777,0.00007849962,0.00015507593,0.00021508656,0.00021686638,0.00009316752,0.00008917961,0.00014724731,0.00023751796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048160044,0.000050462942,0.0633148,0.000106549225,0.000028322158,0.0012701035,0.0002745163,0.00014734534,0.9256603,0.00013706867,0.000049503324,0.008479354],"study_design_scores_gemma":[0.000031098367,0.00087307073,0.7567784,0.000042788077,0.00008763023,0.011428619,0.00051800447,0.0009126212,0.22597177,0.00031307995,0.003028024,0.000014815804],"about_ca_topic_score_codex":0.0011831383,"about_ca_topic_score_gemma":0.001566099,"teacher_disagreement_score":0.0015678424,"about_ca_system_score_codex":0.00017070911,"about_ca_system_score_gemma":0.0001417136,"threshold_uncertainty_score":0.0052449703},"labels":[],"label_agreement":null},{"id":"W2147686473","doi":"10.1128/jcm.01858-08","title":"Multiplexed Real-Time PCR Assay for Discrimination of <i>Plasmodium</i> Species with Improved Sensitivity for Mixed Infections","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":260,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; McGill University Health Centre","funders":"National Research Council of the Philippines; University of Alberta; Public Health Agency of Canada; McGill University","keywords":"Biology; Plasmodium falciparum; Gold standard (test); Multiplex; Malaria; Polymerase chain reaction; Primer (cosmetics); Multiplex polymerase chain reaction; Virology; Parasitology; Plasmodium (life cycle); Assay sensitivity; Species identification; Microbiology; Immunology; Parasite hosting; Genetics; Medicine; Pathology; Chemistry; Zoology","score_opus":0.03775715705741422,"score_gpt":0.3551753728796011,"score_spread":0.3174182158221869,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147686473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5220126,0.0049306257,0.46639597,0.0003751335,0.00037219148,0.00076796644,0.0007423869,0.001800506,0.002602592],"genre_scores_gemma":[0.49264783,0.0013171702,0.50248015,0.00025691782,0.00007801156,0.0005022977,0.00056228455,0.00007293298,0.0020823593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99715,0.0010216249,0.0002723547,0.0006868369,0.0006541636,0.00021506457],"domain_scores_gemma":[0.9977071,0.0011093809,0.00040647225,0.00017911961,0.0004660596,0.00013167596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042302655,0.00089299923,0.0009334837,0.0010821739,0.00030464784,0.0010576003,0.00093604694,0.00073601736,0.0010054939],"category_scores_gemma":[0.0042439783,0.0005939917,0.0004960428,0.00055327965,0.0006457665,0.00086992554,0.00039861625,0.0011702942,0.0005429372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005647719,0.00015523822,0.007704285,0.00020444366,0.00004033566,0.0002576584,0.00029334816,0.0009984315,0.96120024,0.00035716765,0.00033773668,0.027886247],"study_design_scores_gemma":[0.0000953826,0.0014937042,0.01571798,0.00012448414,0.0002107218,0.0031437036,0.00017953226,0.039142676,0.9313009,0.0005198279,0.007929239,0.00014187917],"about_ca_topic_score_codex":0.0007498658,"about_ca_topic_score_gemma":0.0015605673,"teacher_disagreement_score":0.0042302655,"about_ca_system_score_codex":0.00047425105,"about_ca_system_score_gemma":0.000576684,"threshold_uncertainty_score":0.022372007},"labels":[],"label_agreement":null},{"id":"W2147735948","doi":"10.1128/jcm.44.1.280-282.2006","title":"<i>Nocardia cyriacigeorgica</i> Septicemia","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Nocardia; Microbiology; Biology; Blood culture; Nocardiosis; Bacteremia; Virology; Bacteria; Antibiotics; Genetics","score_opus":0.024358546851719242,"score_gpt":0.36734880012471277,"score_spread":0.34299025327299354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147735948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9813706,0.0042798533,0.0022396808,0.0010331472,0.00016908537,0.000085278305,0.00008840411,0.00013759696,0.010596381],"genre_scores_gemma":[0.9975395,0.00070820266,0.0006656804,0.00042204087,0.00012482758,0.000011602128,0.000050839724,0.0000080300015,0.0004692206],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996606,0.000042481955,0.00003776291,0.00006598976,0.00004749503,0.00014553798],"domain_scores_gemma":[0.9993735,0.0001487224,0.0002289688,0.00004538031,0.000054779,0.00014867092],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002671668,0.0011511687,0.0004611573,0.0005886118,0.00094185874,0.00084455626,0.00038211318,0.001717307,0.0008929716],"category_scores_gemma":[0.0014705572,0.00029925918,0.00032581083,0.00041680134,0.0010131192,0.00030332428,0.00068187196,0.0010542857,0.00035792647],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015876647,0.00007495228,0.045463633,0.00015839549,0.00001917872,0.9361759,0.00050314085,0.00021239609,0.00975032,0.000471742,0.0011842132,0.005827314],"study_design_scores_gemma":[0.00003854196,0.00016702537,0.01948454,0.00004427957,0.000025907899,0.9718787,0.00020623821,0.0002184265,0.0048308186,0.00014278987,0.0029474802,0.000015261525],"about_ca_topic_score_codex":0.0026917553,"about_ca_topic_score_gemma":0.001915643,"teacher_disagreement_score":0.0026917553,"about_ca_system_score_codex":0.0005918068,"about_ca_system_score_gemma":0.00042140632,"threshold_uncertainty_score":0.0053521395},"labels":[],"label_agreement":null},{"id":"W2148087739","doi":"10.1128/jcm.41.1.463-466.2003","title":"Epidemiology and Antimicrobial Susceptibilities of 111 <i>Campylobacter fetus</i> subsp. <i>fetus</i> Strains Isolated in Quebec, Canada, from 1983 to 2000","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ste. Anne's Hospital; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Campylobacter; Ampicillin; Tetracycline; Meropenem; Population; Microbiology; Ciprofloxacin; Erythromycin; Campylobacter fetus; Gentamicin; Biology; Imipenem; Cefotaxime; Epidemiology; Antibiotics; Internal medicine; Medicine; Antibiotic resistance; Bacteria","score_opus":0.037821487984089006,"score_gpt":0.2915263749942733,"score_spread":0.2537048870101843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148087739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99727446,0.0009972994,0.000108834436,0.00010294739,0.0000068648187,0.000018995614,0.000723744,0.0000117516865,0.0007551978],"genre_scores_gemma":[0.9976235,0.0005689574,0.00020548508,0.00013411487,0.000008297856,0.000011476283,0.0010037855,0.0000040770838,0.00044025245],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995521,0.000032871816,0.000039632607,0.00008643111,0.00014338292,0.00014559268],"domain_scores_gemma":[0.9987991,0.000118843316,0.0003131839,0.000019493851,0.0004483475,0.00030100887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018226424,0.00046263798,0.00032889642,0.0007839088,0.00094596425,0.00070238725,0.0006016673,0.0005531689,0.00094054453],"category_scores_gemma":[0.0010324327,0.00037292394,0.00022719971,0.0012546333,0.0006948794,0.00019752957,0.0002539878,0.00043815983,0.00015986087],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007589819,0.000022075146,0.9911481,0.000043270982,0.000020423166,0.0006290372,0.0004102963,0.00012362853,0.0024121571,0.000015874995,0.00056789175,0.004531211],"study_design_scores_gemma":[0.0000072417,0.00009882635,0.9964689,0.000027163434,0.00001767112,0.0012799312,0.0005365701,0.00016443898,0.00044916806,0.0000040789105,0.0009388167,0.0000072466196],"about_ca_topic_score_codex":0.85465485,"about_ca_topic_score_gemma":0.85390365,"teacher_disagreement_score":0.14534515,"about_ca_system_score_codex":0.007784734,"about_ca_system_score_gemma":0.0034583893,"threshold_uncertainty_score":0.2924022},"labels":[],"label_agreement":null},{"id":"W2148136110","doi":"10.1128/jcm.02480-12","title":"Polyclonal Outbreak of KPC-3-Producing Enterobacter cloacae at a Single Hospital in Montréal, Québec, Canada","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Jewish General Hospital","funders":"","keywords":"Enterobacter cloacae; Outbreak; Enterobacteriaceae Infections; Biology; Plasmid; Enterobacteriaceae; Microbiology; Enterobacter; Virology; Genetics; Gene; Escherichia coli","score_opus":0.010406246908408766,"score_gpt":0.25243025263942687,"score_spread":0.2420240057310181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148136110","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99605906,0.00027804234,0.00026806272,0.00067115814,0.000027105953,0.00010789147,0.0005837054,0.000030699663,0.0019744323],"genre_scores_gemma":[0.9987833,0.00012385858,0.0001621457,0.00027532797,0.000021347409,0.000008582826,0.000152147,0.0000041246644,0.00046926044],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99922323,0.000053279087,0.00004279225,0.0001972384,0.00023860479,0.00024491042],"domain_scores_gemma":[0.99837434,0.000098514516,0.00025278926,0.000037757756,0.0005549579,0.00068162626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037874802,0.0005186272,0.00040308788,0.00070422643,0.0026513366,0.0010350824,0.0009947162,0.0007523976,0.0018208884],"category_scores_gemma":[0.0012045428,0.00035271354,0.00023612232,0.0010315836,0.0009845007,0.00037538097,0.0006749881,0.00086579914,0.00013867064],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025810712,0.00022713102,0.95736575,0.00010476628,0.00013457428,0.012006337,0.0020394924,0.00078395294,0.011444308,0.00018209756,0.0032347392,0.012218791],"study_design_scores_gemma":[0.000030403115,0.00023438866,0.99219453,0.000033604174,0.00003420248,0.0023614177,0.002243799,0.0008889059,0.0006062017,0.000025178351,0.0013123121,0.000035120884],"about_ca_topic_score_codex":0.9464607,"about_ca_topic_score_gemma":0.9637876,"teacher_disagreement_score":0.053539276,"about_ca_system_score_codex":0.01892099,"about_ca_system_score_gemma":0.01624316,"threshold_uncertainty_score":0.13728201},"labels":[],"label_agreement":null},{"id":"W2148350859","doi":"10.1128/jcm.02220-10","title":"Genotypic and Phenotypic Characterization of Methicillin-Susceptible Staphylococcus aureus Isolates Misidentified as Methicillin-Resistant Staphylococcus aureus by the BD GeneOhm MRSA Assay","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"National Institute on Minority Health and Health Disparities; National Institute of Nursing Research; Ministerio de Economía y Competitividad; Fonds National de la Recherche Luxembourg; Johns Hopkins University","keywords":"SCCmec; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Meticillin; Staphylococcal infections; Biology; Typing; Leukocidin; Multiplex polymerase chain reaction; Micrococcaceae; Polymerase chain reaction; Virology; Antibacterial agent; Antibiotics; Genetics; Bacteria; Gene","score_opus":0.05170269224154893,"score_gpt":0.3323178731499556,"score_spread":0.28061518090840665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148350859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985812,0.0001920052,0.0005857663,0.000019309402,0.000009325617,0.000023103938,0.00014584755,0.00001262283,0.00043087118],"genre_scores_gemma":[0.99686414,0.00013194568,0.0020474119,0.00004264122,0.0000118490925,0.00002823758,0.00048559438,0.000009199454,0.00037892605],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992843,0.00011390763,0.00013488528,0.00010159018,0.00029324525,0.00007203225],"domain_scores_gemma":[0.99889344,0.0002709086,0.00025045493,0.000109739085,0.00034669708,0.0001288231],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039374124,0.0003345451,0.00033600585,0.0011534216,0.0002665058,0.00033181853,0.00019033073,0.00026206463,0.0006245738],"category_scores_gemma":[0.002342039,0.00023203436,0.00021218415,0.00056984596,0.00020742454,0.00015834802,0.0002155853,0.00017455449,0.00032163336],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007594938,0.0002150431,0.5362072,0.00006632953,0.000041135718,0.0025455207,0.00074892107,0.00014013507,0.44343388,0.00009209699,0.0002685985,0.015481676],"study_design_scores_gemma":[0.000024708906,0.0009431353,0.89805096,0.000028648403,0.000083041865,0.014772553,0.0007560132,0.0012347639,0.08115106,0.00004886717,0.0028736775,0.00003248259],"about_ca_topic_score_codex":0.002116656,"about_ca_topic_score_gemma":0.002945748,"teacher_disagreement_score":0.002116656,"about_ca_system_score_codex":0.00017994133,"about_ca_system_score_gemma":0.00013962395,"threshold_uncertainty_score":0.0042087436},"labels":[],"label_agreement":null},{"id":"W2148403313","doi":"10.1128/jcm.01095-08","title":"Phenotypic and Genotypic Characterization of Verotoxin-Producing<i>Escherichia coli</i>O103:H2 Isolates from Cattle and Humans","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"VTEC; Pulsed-field gel electrophoresis; Colicin; Virulence; Biology; Microbiology; Escherichia coli; Plasmid; Hemolysin; Phenotype; Genotype; Antibiotic resistance; Enterobacteriaceae; Shiga-like toxin; Antimicrobial; Gene; Genetics; Antibiotics","score_opus":0.031077771879288934,"score_gpt":0.31407227520105013,"score_spread":0.2829945033217612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148403313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991184,0.0002169455,0.00019819192,0.000021535832,0.0000030572428,0.000006211975,0.0001383207,0.0000018251733,0.00029548342],"genre_scores_gemma":[0.9986266,0.00024257562,0.0003222649,0.000045253422,0.00000970894,0.0000046274627,0.0005835077,0.0000035712972,0.00016182863],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99965453,0.0000885735,0.00003508936,0.00008719755,0.00007005491,0.00006461977],"domain_scores_gemma":[0.99971634,0.000057430116,0.00008114577,0.000024226954,0.000058305588,0.00006253856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000248748,0.0002595133,0.0002248143,0.0004556211,0.00019882413,0.00047950653,0.00014630177,0.0003212797,0.0005245246],"category_scores_gemma":[0.0007111148,0.00013475664,0.00012709186,0.00042455425,0.0001917574,0.0001269153,0.00016610371,0.00021704801,0.00016529823],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094088115,0.00017451594,0.8012954,0.00013245136,0.000086294654,0.0014280273,0.0010435681,0.00015758477,0.17459401,0.0000595463,0.00027098073,0.019816695],"study_design_scores_gemma":[0.000022844226,0.00049185834,0.98371685,0.00002741736,0.000043524753,0.0049299737,0.0009516214,0.0001723798,0.008553474,0.000029064024,0.0010520321,0.000008966529],"about_ca_topic_score_codex":0.0035979762,"about_ca_topic_score_gemma":0.0027357698,"teacher_disagreement_score":0.0035979762,"about_ca_system_score_codex":0.00019268222,"about_ca_system_score_gemma":0.00015781591,"threshold_uncertainty_score":0.0071540475},"labels":[],"label_agreement":null},{"id":"W2148414127","doi":"10.1128/jcm.02500-06","title":"Comparative Genomics of Canadian Epidemic Lineages of Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"Jewish General Hospital; Centre Hospitalier Universitaire de Québec; University of Alberta; Public Health Agency; Public Health Agency of Canada","keywords":"ORFS; Virulence; Staphylococcus aureus; Biology; Microbiology; Methicillin-resistant Staphylococcus aureus; Staphylococcal infections; Pathogen; Pulsed-field gel electrophoresis; Virology; Gene; Open reading frame; Genetics; Genotype; Bacteria; Peptide sequence","score_opus":0.09428002040750617,"score_gpt":0.4036392409567729,"score_spread":0.30935922054926673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148414127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962579,0.000405131,0.00031140255,0.00006420225,0.0000039660813,0.000013207203,0.0009890464,0.000010440307,0.0019447001],"genre_scores_gemma":[0.9908573,0.0006773592,0.0017251644,0.0001104303,0.000005528971,0.000015411733,0.0046612015,0.000014239434,0.001933379],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997615,0.000014537113,0.000006587001,0.000042710824,0.000082639875,0.00009211568],"domain_scores_gemma":[0.9996691,0.000037910522,0.000056560526,0.000009007519,0.000150427,0.000076982935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001539838,0.0002656299,0.00023708874,0.0008441025,0.00083791715,0.0005270279,0.00024931072,0.0002207947,0.00095113454],"category_scores_gemma":[0.00051018957,0.00013450913,0.00030125387,0.0014406814,0.000199712,0.0000971519,0.0002821126,0.00035425476,0.00017140197],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016207336,0.00015843319,0.16460124,0.00031300486,0.00013331899,0.0010182715,0.004730963,0.0012351081,0.77211684,0.0012079561,0.0018089748,0.051055193],"study_design_scores_gemma":[0.000012195222,0.00016086774,0.98083055,0.000022865104,0.00006276679,0.00068712543,0.0012941653,0.0010137808,0.00804275,0.00010388502,0.007750177,0.000018956795],"about_ca_topic_score_codex":0.55939984,"about_ca_topic_score_gemma":0.6127734,"teacher_disagreement_score":0.44060016,"about_ca_system_score_codex":0.0032477968,"about_ca_system_score_gemma":0.0023858116,"threshold_uncertainty_score":0.88638985},"labels":[],"label_agreement":null},{"id":"W2148492106","doi":"10.1128/jcm.43.8.4168-4171.2005","title":"Evaluation of β-Lactamase Inhibitors in Disk Tests for Detection of Plasmid-Mediated AmpC β-Lactamases in Well-Characterized Clinical Strains of <i>Klebsiella</i> spp","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Cefoxitin; Cefotetan; Klebsiella; Plasmid; Microbiology; Enterobacteriaceae; Klebsiella pneumoniae; Biology; Bacteria; Escherichia coli; DNA; Genetics; Gene; Staphylococcus aureus","score_opus":0.04806598265787286,"score_gpt":0.3859115098016377,"score_spread":0.3378455271437648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148492106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897272,0.002856971,0.0061604646,0.00007236952,0.00002335808,0.00013484042,0.00020192355,0.00010774413,0.00071512035],"genre_scores_gemma":[0.9711412,0.0013899244,0.02630445,0.000062902094,0.000025953303,0.00012391881,0.0005146427,0.000030249912,0.00040676194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969446,0.001230301,0.0002944163,0.0004257998,0.0009868545,0.00011798746],"domain_scores_gemma":[0.99830997,0.00063040777,0.00041687142,0.000081512,0.00037791586,0.00018328939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015937422,0.000977553,0.0010044125,0.00094908546,0.00023429414,0.00055477227,0.00049667986,0.00068704726,0.00039520615],"category_scores_gemma":[0.0029356105,0.0005412749,0.00034258678,0.0007699365,0.0003700797,0.0003850066,0.0003029867,0.00040405025,0.00034416988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001296212,0.0002804937,0.0145035945,0.00014492782,0.000057917932,0.0001273917,0.00008578283,0.00029102297,0.97522724,0.000018416,0.00003447686,0.007932533],"study_design_scores_gemma":[0.00009930148,0.0061694165,0.023619676,0.000021367301,0.00023732231,0.0016354881,0.00007616672,0.002914587,0.96411675,0.000021205244,0.0010600445,0.000028663073],"about_ca_topic_score_codex":0.0007390629,"about_ca_topic_score_gemma":0.0015954109,"teacher_disagreement_score":0.0015937422,"about_ca_system_score_codex":0.00028452202,"about_ca_system_score_gemma":0.0003706091,"threshold_uncertainty_score":0.008428574},"labels":[],"label_agreement":null},{"id":"W2148629083","doi":"10.1128/jcm.38.12.4629-4632.2000","title":"PCR Detection and Evidence of Shedding of Porcine Circovirus Type 2 in Boar Semen","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Food Inspection Agency","funders":"","keywords":"Porcine circovirus; Semen; Biology; Circovirus; Nested polymerase chain reaction; Antibody; Virology; BOAR; Andrology; Molecular biology; Polymerase chain reaction; Virus; Immunology; Medicine; Gene; Anatomy; Genetics","score_opus":0.08503160657765584,"score_gpt":0.3561431571685141,"score_spread":0.27111155059085823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148629083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99695885,0.0006623229,0.0014275197,0.000021563643,0.000016246462,0.000041512758,0.00024795128,0.000029189994,0.0005948808],"genre_scores_gemma":[0.9898928,0.0007304188,0.006081363,0.00012325699,0.00002000602,0.00009972017,0.0013776306,0.000013971569,0.0016608478],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995178,0.000086782136,0.00004347439,0.00016276214,0.00008964404,0.00009953142],"domain_scores_gemma":[0.9994423,0.00020491266,0.00013241339,0.000036824335,0.00010314382,0.000080452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045694117,0.00050380453,0.00034865696,0.0005115882,0.00027957212,0.00039979865,0.00024259639,0.000668812,0.00081863697],"category_scores_gemma":[0.00061560824,0.00039450286,0.00029464037,0.00022238094,0.00044215738,0.00029992728,0.00015230407,0.00045819973,0.0003075885],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030524112,0.0000971296,0.026267212,0.000081344275,0.000024045505,0.0002307509,0.0002071798,0.000053566706,0.9714065,0.000031467785,0.00003631265,0.0012592403],"study_design_scores_gemma":[0.000059783895,0.011566724,0.520641,0.00006448387,0.00016415639,0.004268337,0.0010767368,0.0015302255,0.4582682,0.00007674275,0.0022417349,0.000041938132],"about_ca_topic_score_codex":0.0015996393,"about_ca_topic_score_gemma":0.001912309,"teacher_disagreement_score":0.0015996393,"about_ca_system_score_codex":0.0002546762,"about_ca_system_score_gemma":0.00017199168,"threshold_uncertainty_score":0.003180623},"labels":[],"label_agreement":null},{"id":"W2148640338","doi":"10.1128/jcm.42.4.1471-1476.2004","title":"Performance and Cost Evaluation of One Commercial andSix In-House Conventional and Real-Time ReverseTranscription-PCR Assays for Detection of Severe AcuteRespiratory SyndromeCoronavirus","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; Health Sciences Centre; Sunnybrook Health Science Centre; McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Centers for Disease Control and Prevention; Hospital for Sick Children; Women's College Hospital; Ontario Ministry of Health and Long-Term Care","keywords":"Serial dilution; Assay sensitivity; Biology; Real-time polymerase chain reaction; Molecular biology; Virology; Medicine; Pathology; Gene","score_opus":0.13095970983670416,"score_gpt":0.3932581830989182,"score_spread":0.262298473262214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148640338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88506263,0.0052907537,0.10070824,0.00048275723,0.0004261516,0.0013888445,0.0014145004,0.0017446172,0.003481571],"genre_scores_gemma":[0.8536085,0.0017144263,0.13275722,0.00035347184,0.00021199726,0.0009824274,0.0050906767,0.00028020813,0.0050011277],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9893114,0.0029138557,0.00043061964,0.0021100272,0.0048448592,0.0003892124],"domain_scores_gemma":[0.99212193,0.0029230034,0.0008042044,0.0008859609,0.002828383,0.0004364724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0070272936,0.0019491331,0.0011685643,0.0016056126,0.000456005,0.0015449815,0.0026872326,0.001349935,0.0016424529],"category_scores_gemma":[0.007160419,0.00084790745,0.0009041224,0.0009065792,0.00103588,0.0008818493,0.00073274877,0.0006599048,0.001046761],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004933273,0.0017609831,0.04550705,0.001162551,0.00031853546,0.00022254745,0.00040198895,0.00547592,0.7637926,0.0004967086,0.0015577123,0.17437026],"study_design_scores_gemma":[0.0005573825,0.012021643,0.05126447,0.000104911596,0.00079340534,0.001244173,0.00028985093,0.054655507,0.86800855,0.00021392107,0.010667246,0.00017887076],"about_ca_topic_score_codex":0.0020813618,"about_ca_topic_score_gemma":0.0029182353,"teacher_disagreement_score":0.0070272936,"about_ca_system_score_codex":0.002115359,"about_ca_system_score_gemma":0.0009858673,"threshold_uncertainty_score":0.03716433},"labels":[],"label_agreement":null},{"id":"W2148832775","doi":"10.1128/jcm.01556-09","title":"<i>Neosartorya udagawae</i> ( <i>Aspergillus udagawae</i> ), an Emerging Agent of Aspergillosis: How Different Is It from <i>Aspergillus fumigatus</i> ?","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Aspergillus fumigatus; Gliotoxin; Virulence; Aspergillosis; Microbiology; Biology; Aspergillus; Pathogen; Conidium; Incubation; Immunology; Gene; Genetics; Biochemistry","score_opus":0.0744101158253094,"score_gpt":0.385098373834652,"score_spread":0.31068825800934263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148832775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547005,0.0022412539,0.0008463632,0.00014275707,0.00002755597,0.000013016345,0.000059754253,0.000014363961,0.0011848777],"genre_scores_gemma":[0.9971523,0.001169143,0.0010002084,0.00013191387,0.000013938562,0.000004581631,0.00013198584,0.000004055927,0.00039182324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998945,0.000022298704,0.000016826038,0.000030103178,0.00001378174,0.000022404472],"domain_scores_gemma":[0.9998523,0.000019385605,0.00006387249,0.000015405049,0.000020266767,0.000028767796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012816367,0.00024627228,0.0002285849,0.0001275086,0.0001336213,0.00036891253,0.00015321927,0.0003096661,0.00031072603],"category_scores_gemma":[0.00022826213,0.000067424546,0.00015249167,0.00009643693,0.00028184752,0.0002769954,0.00018053631,0.00024295773,0.00016813108],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046256863,0.00009212809,0.0899997,0.00031111532,0.000044064476,0.008302171,0.00037082803,0.00010504304,0.8804131,0.00053776236,0.0002158865,0.019145537],"study_design_scores_gemma":[0.000052560983,0.002031052,0.5398534,0.00011054876,0.00020559844,0.12023201,0.0025710629,0.0008221718,0.31816006,0.0008062357,0.015099076,0.000056204102],"about_ca_topic_score_codex":0.0008044722,"about_ca_topic_score_gemma":0.0011457381,"teacher_disagreement_score":0.0008044722,"about_ca_system_score_codex":0.00014160687,"about_ca_system_score_gemma":0.000072208335,"threshold_uncertainty_score":0.0015996099},"labels":[],"label_agreement":null},{"id":"W2148933559","doi":"10.1128/jcm.43.1.74-83.2005","title":"Molecular Epidemiology of Pneumococcal Colonization in Response to Pneumococcal Conjugate Vaccination in Children with Recurrent Acute Otitis Media","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Fondation pour la Recherche Médicale","keywords":"Pneumococcal conjugate vaccine; Vaccination; Serotype; Streptococcus pneumoniae; Pneumococcal infections; Population; Biology; Virology; Otitis; Conjugate vaccine; Immunology; Medicine; Microbiology; Genetics","score_opus":0.027987927982250662,"score_gpt":0.3742701087044429,"score_spread":0.34628218072219225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148933559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998895,0.00077216804,0.00004486191,0.00003452009,0.000018054774,0.0000890331,0.00004691791,0.000005220803,0.000094242314],"genre_scores_gemma":[0.9988586,0.00036103584,0.00021211473,0.000058937872,0.000043759577,0.00019790887,0.00014674554,0.0000029238852,0.000117856245],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.9973748,0.0014434687,0.0002013899,0.00025645999,0.00036424145,0.00035960673],"domain_scores_gemma":[0.9974214,0.0009417834,0.00083230314,0.00014717471,0.00013261453,0.00052479934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028898185,0.00072343147,0.0016376801,0.00051942986,0.00026921823,0.00046756395,0.00052730826,0.0014677262,0.0007812376],"category_scores_gemma":[0.0056677633,0.0006891546,0.001182611,0.00044187676,0.0006683701,0.0006181714,0.00035649093,0.00087765977,0.00020481934],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6462871,0.01767581,0.25499943,0.0013348592,0.0030052941,0.00046259482,0.000529206,0.0013633514,0.018336423,0.000099934725,0.0006216259,0.055284474],"study_design_scores_gemma":[0.06522007,0.29620174,0.6313429,0.000086204,0.001233883,0.00047003015,0.00015702339,0.0014666473,0.0029083733,0.000091390415,0.0007674671,0.000054366268],"about_ca_topic_score_codex":0.0017308161,"about_ca_topic_score_gemma":0.0016011328,"teacher_disagreement_score":0.0028898185,"about_ca_system_score_codex":0.0006173354,"about_ca_system_score_gemma":0.00064157596,"threshold_uncertainty_score":0.015282989},"labels":[],"label_agreement":null},{"id":"W2149116072","doi":"10.1128/jcm.03686-14","title":"Detection of Enterovirus D68 in Canadian Laboratories","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; University of Calgary; Mount Sinai Hospital; Ministry of Health; Children's Hospital of Eastern Ontario; Sunnybrook Health Science Centre; BC Centre for Disease Control; Public Health Ontario; Saskatchewan Disease Control Laboratory; University of Alberta; Health Sciences Centre; University Health Network; Capital District Health Authority; St. Joseph’s Healthcare Hamilton; Institut National de Santé Publique du Québec; University of Ottawa; Dr. Georges-L.-Dumont University Hospital Centre; Provincial Laboratory of Public Health; St. John’s Health Sciences Centre; University of Toronto; Dalhousie University","funders":"","keywords":"Enterovirus; Virology; Enterovirus Infections; Biology; Medicine; Virus","score_opus":0.09537655823061375,"score_gpt":0.4378630037565582,"score_spread":0.3424864455259444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149116072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9790341,0.0017651996,0.0022390755,0.0007379192,0.00008194368,0.00023148341,0.0010857447,0.0002274547,0.014597013],"genre_scores_gemma":[0.99393,0.00067958987,0.0032447823,0.00036690332,0.000014385436,0.000023118542,0.0005427213,0.000013861385,0.0011847281],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99036014,0.00095563935,0.00046055464,0.0011083327,0.005733002,0.0013822789],"domain_scores_gemma":[0.9863841,0.0015652479,0.0013099724,0.00045655647,0.009267563,0.0010164783],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004546878,0.00058124814,0.00037336524,0.002788657,0.0022048675,0.0023473194,0.0016555341,0.00078082125,0.001467546],"category_scores_gemma":[0.014349191,0.0005234091,0.00036865217,0.002551916,0.0014894479,0.00052733865,0.0012732241,0.00079988956,0.0002805732],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019899076,0.00038422534,0.8165448,0.0007281299,0.00014373125,0.0016786691,0.0072245807,0.0010379952,0.089344256,0.0013734396,0.004477894,0.075072385],"study_design_scores_gemma":[0.00020409565,0.0014137798,0.88869077,0.00042213243,0.00020340778,0.0021700875,0.010092667,0.0034254496,0.06323921,0.00035290825,0.02960495,0.00018047607],"about_ca_topic_score_codex":0.88994896,"about_ca_topic_score_gemma":0.9090567,"teacher_disagreement_score":0.110051036,"about_ca_system_score_codex":0.017723236,"about_ca_system_score_gemma":0.017458698,"threshold_uncertainty_score":0.22139823},"labels":[],"label_agreement":null},{"id":"W2149386746","doi":"10.1128/jcm.38.6.2170-2173.2000","title":"Evaluation of Three Rapid Methods for Detection of Methicillin Resistance in<i>Staphylococcus aureus</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":159,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre","funders":"","keywords":"Staphylococcus aureus; Microbiology; SCCmec; Latex fixation test; Methicillin-resistant Staphylococcus aureus; Meticillin; Penicillin; Micrococcaceae; Staphylococcal infections; Medicine; Virology; Penicillin binding proteins; Antibiotics; Biology; Antibacterial agent; Antibody; Bacteria; Immunology","score_opus":0.1132601237570531,"score_gpt":0.46355819844676127,"score_spread":0.3502980746897082,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149386746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92054325,0.015332291,0.056186747,0.0005557553,0.00026394546,0.0016284464,0.001864466,0.00084225537,0.0027827795],"genre_scores_gemma":[0.8146049,0.004177866,0.17293476,0.00047829718,0.00012720724,0.0012978629,0.0041390113,0.00012387075,0.0021162059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98326117,0.0049119233,0.0013638377,0.002767172,0.006994062,0.00070193136],"domain_scores_gemma":[0.98435694,0.007383475,0.0031792128,0.0007158941,0.0034956888,0.00086876674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004842612,0.0022471927,0.0013159766,0.003784404,0.00048489738,0.0010197388,0.0021851303,0.00184609,0.0009109721],"category_scores_gemma":[0.009276414,0.0010227658,0.0010767181,0.0013095533,0.0008740037,0.00083511183,0.0011963282,0.00092441286,0.0007662106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0053055813,0.0016751855,0.04390953,0.0015378481,0.00034171843,0.00026405728,0.0003668174,0.0009640863,0.86612153,0.00021898423,0.00070734293,0.07858717],"study_design_scores_gemma":[0.0006627739,0.01683299,0.06506189,0.00016353694,0.00053143955,0.0053368835,0.0003415271,0.008187885,0.89826226,0.00011582844,0.004198927,0.00030409673],"about_ca_topic_score_codex":0.0023275577,"about_ca_topic_score_gemma":0.003477006,"teacher_disagreement_score":0.004842612,"about_ca_system_score_codex":0.0013338876,"about_ca_system_score_gemma":0.00081726554,"threshold_uncertainty_score":0.025610447},"labels":[],"label_agreement":null},{"id":"W2149420445","doi":"10.1128/jcm.00173-09","title":"Laboratory Diagnosis of Amoebic Keratitis: Comparison of Four Diagnostic Methods for Different Types of Clinical Specimens","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Public Health Agency of Canada; Toronto General Hospital","funders":"","keywords":"Acanthamoeba keratitis; Acanthamoeba; Contact lens; Primer (cosmetics); Keratitis; Medicine; Confidence interval; Polymerase chain reaction; Pathology; Internal medicine; Biology; Microbiology; Ophthalmology; Genetics","score_opus":0.09818740757053597,"score_gpt":0.49578884232427256,"score_spread":0.3976014347537366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149420445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9679312,0.015693303,0.013491754,0.00032412028,0.0002641185,0.00024005624,0.0002533643,0.00019657878,0.0016053262],"genre_scores_gemma":[0.9760957,0.0022742816,0.020468388,0.00015622361,0.00008678966,0.00012861761,0.0005621125,0.000021774878,0.00020622127],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9787477,0.010195856,0.0023945358,0.0021565491,0.0058881706,0.0006171144],"domain_scores_gemma":[0.96535736,0.02068484,0.003970851,0.0019637633,0.006928676,0.0010945207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.017488986,0.0011580747,0.0016730012,0.004656931,0.00032579966,0.0016080522,0.0014562357,0.0012973727,0.00037136278],"category_scores_gemma":[0.037971634,0.00064930547,0.0010910726,0.0013173216,0.0009560676,0.0011845372,0.0008846219,0.0007637434,0.0003120227],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010667178,0.0009468728,0.8528423,0.0012293892,0.0015563836,0.00034629437,0.00052099844,0.0015414989,0.033248276,0.00018187666,0.0005066839,0.09641221],"study_design_scores_gemma":[0.0011710441,0.02368824,0.876038,0.0004911375,0.00150974,0.005979871,0.000821134,0.021595344,0.06551114,0.0003716837,0.0026266754,0.00019597958],"about_ca_topic_score_codex":0.0010052626,"about_ca_topic_score_gemma":0.0013682585,"teacher_disagreement_score":0.017488986,"about_ca_system_score_codex":0.00091841276,"about_ca_system_score_gemma":0.0006781727,"threshold_uncertainty_score":0.09249169},"labels":[],"label_agreement":null},{"id":"W2149437571","doi":"10.1128/jcm.00536-14","title":"Population Analysis of Streptococcus suis Isolates from Slaughtered Swine by Use of Minimum Core Genome Sequence Typing","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Streptococcus suis; Typing; Biology; Genome; Population; Sequence analysis; Whole genome sequencing; Sequence (biology); Multilocus sequence typing; Genetics; Microbiology; Virology; Genotype; Medicine; Gene","score_opus":0.11550588270659415,"score_gpt":0.40052333160601217,"score_spread":0.28501744889941805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149437571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989887,0.000020736834,0.0008084352,0.0000031824843,0.0000017454614,0.0000080876525,0.0000689764,0.0000034683394,0.00009659397],"genre_scores_gemma":[0.997825,0.000031160027,0.0015592346,0.000009895976,0.000003263577,0.00001057041,0.00048130416,0.0000029755445,0.000076613724],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99961287,0.000084755324,0.000036461777,0.00012314021,0.000087477354,0.000055357905],"domain_scores_gemma":[0.99957126,0.00012933905,0.00010370596,0.000040198345,0.000096892094,0.00005866382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005409216,0.00021664069,0.00034498653,0.0011394813,0.00021260255,0.0003149672,0.00014750939,0.00025073002,0.0003421176],"category_scores_gemma":[0.0008446384,0.00011197605,0.00029381315,0.0006151291,0.00018396271,0.00012338892,0.00021012197,0.00024123372,0.000092938855],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044060423,0.00017656275,0.7863866,0.000028803483,0.00008579514,0.00021991596,0.00047226428,0.0004334404,0.19774851,0.000077368975,0.000059612008,0.013870517],"study_design_scores_gemma":[0.000007893322,0.00058162014,0.9889769,0.0000053722083,0.000043029035,0.0004933729,0.000258153,0.001967117,0.0073795393,0.00003839035,0.00023942061,0.000009136413],"about_ca_topic_score_codex":0.0017320153,"about_ca_topic_score_gemma":0.0017139806,"teacher_disagreement_score":0.0017320153,"about_ca_system_score_codex":0.00014637852,"about_ca_system_score_gemma":0.00018208809,"threshold_uncertainty_score":0.0034438372},"labels":[],"label_agreement":null},{"id":"W2149584040","doi":"10.1128/jcm.38.10.3896-3899.2000","title":"<i>Mycobacterium branderi</i> from Both a Hand Infection and a Case of Pulmonary Disease","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; Health Sciences Centre; St. Boniface Hospital; Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Biology; 16S ribosomal RNA; Microbiology; Pathogen; Mycolic acid; Mycobacterium; Human pathogen; Ribosomal RNA; Antibiotics; Human disease; Gene; Bacteria; Genetics","score_opus":0.03299049599737514,"score_gpt":0.3592696254627641,"score_spread":0.32627912946538895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149584040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9593081,0.00431905,0.0016275893,0.0066442825,0.0007823683,0.00019978789,0.000249538,0.000118712946,0.026750756],"genre_scores_gemma":[0.9930554,0.0011164426,0.0011546055,0.0016735552,0.0008782293,0.000025831283,0.00012842684,0.000018386902,0.0019491254],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99930966,0.000087492364,0.00008908766,0.00015829665,0.0001281626,0.00022721446],"domain_scores_gemma":[0.9992718,0.00019782898,0.00017033934,0.00008903179,0.000054636064,0.0002163026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004283981,0.0015849884,0.00059291336,0.0016143719,0.0016708998,0.0011512602,0.0009164896,0.004096376,0.0019043955],"category_scores_gemma":[0.0035151779,0.0008007777,0.0006234192,0.0006337158,0.0017093739,0.0013440672,0.0012031106,0.0022505363,0.0008608367],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011626273,0.000037716698,0.014408153,0.00008582656,0.000012259543,0.9786684,0.0005187229,0.00005195814,0.0026855215,0.00028184257,0.00081431103,0.00231911],"study_design_scores_gemma":[0.00001662962,0.00007732367,0.01106426,0.000026489268,0.00002150043,0.9843715,0.00026011615,0.00013830047,0.0012731077,0.00021465345,0.0025205996,0.000015544669],"about_ca_topic_score_codex":0.004033604,"about_ca_topic_score_gemma":0.003746864,"teacher_disagreement_score":0.004096376,"about_ca_system_score_codex":0.00097405404,"about_ca_system_score_gemma":0.00052392646,"threshold_uncertainty_score":0.008020222},"labels":[],"label_agreement":null},{"id":"W2149613009","doi":"10.1128/jcm.02392-08","title":"Molecular Characterization of Syphilis in Patients in Canada: Azithromycin Resistance and Detection of<i>Treponema pallidum</i>DNA in Whole-Blood Samples versus Ulcerative Swabs","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Alberta Health; Calgary Laboratory Services; Provincial Laboratory of Public Health; Capital District Health Authority; Public Health Agency of Canada","funders":"","keywords":"Syphilis; Treponema; Primary Syphilis; Latent Syphilis; Azithromycin; Medicine; Sexually transmitted disease; Treponematosis; Polymerase chain reaction; Antibiotics; Virology; Immunology; Biology; Microbiology; Gene; Human immunodeficiency virus (HIV); Genetics","score_opus":0.025234428659295188,"score_gpt":0.300255657328111,"score_spread":0.2750212286688158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149613009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987197,0.00027276677,0.00009491245,0.00006250089,0.0000034638922,0.00002347461,0.00012958121,0.000005403771,0.00068811985],"genre_scores_gemma":[0.9988695,0.00023475815,0.0003874056,0.00006600038,0.0000045555903,0.000005512964,0.00019973851,0.0000023178402,0.00023016286],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996037,0.0000372886,0.000026182268,0.00004436441,0.00018066197,0.000107851134],"domain_scores_gemma":[0.99937624,0.00009350776,0.00008584871,0.00001505921,0.00024470114,0.0001846564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028149114,0.0002352089,0.00033886297,0.0011168852,0.0007880594,0.0005624959,0.000362223,0.00035076297,0.0010382689],"category_scores_gemma":[0.0019756116,0.00020602981,0.00011998021,0.0010864509,0.00042968418,0.00015329978,0.00020374631,0.0003178583,0.00014644692],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051150774,0.00008237303,0.9632718,0.000087282744,0.000031079624,0.0016190284,0.00095775124,0.00009752307,0.02224658,0.000058424484,0.0003396765,0.0106970435],"study_design_scores_gemma":[0.00001614921,0.00016871169,0.99343044,0.000016901968,0.000025437063,0.0017565431,0.0008467591,0.00046174394,0.0027731746,0.0000134232205,0.00048459994,0.000006159375],"about_ca_topic_score_codex":0.57900965,"about_ca_topic_score_gemma":0.64000046,"teacher_disagreement_score":0.42099035,"about_ca_system_score_codex":0.0024833784,"about_ca_system_score_gemma":0.0023807655,"threshold_uncertainty_score":0.84693927},"labels":[],"label_agreement":null},{"id":"W2149689938","doi":"10.1128/jcm.40.11.4045-4050.2002","title":"Use of Epitope Mapping To Identify a PCR Template for Protein Amplification and Detection by Enzyme-Linked Immunosorbent Assay of Bovine Herpesvirus Type 1 Glycoprotein D","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Bovine herpesvirus 1; Biology; Epitope; Virology; Monoclonal antibody; Semen; Molecular biology; Glycoprotein; Antibody; Virus; Herpesviridae; Viral disease; Immunology","score_opus":0.13347691816521012,"score_gpt":0.38165052965958424,"score_spread":0.2481736114943741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149689938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.55298126,0.0025005455,0.4392607,0.00029300206,0.00017400613,0.0008051673,0.0004032942,0.00039068994,0.0031914061],"genre_scores_gemma":[0.55948377,0.0026662066,0.43018624,0.00041174656,0.00007767328,0.0010107991,0.002630947,0.00012752267,0.0034050243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989215,0.00035647457,0.000117511474,0.0003124758,0.0001622362,0.00012978686],"domain_scores_gemma":[0.99856925,0.00094151177,0.00012433676,0.0001543087,0.00014402973,0.00006645664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010192256,0.0010980923,0.00071218837,0.0006989714,0.00024870672,0.000502392,0.00049535936,0.00080916233,0.0011044461],"category_scores_gemma":[0.0017433523,0.00057449396,0.0005051144,0.00037020654,0.00046308225,0.00037806926,0.00038756902,0.0012894082,0.001307726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043178858,0.00005849553,0.00019733471,0.000051684485,0.000004875662,0.000028629142,0.00001937503,0.000049193062,0.99735606,0.00007858705,0.000018690625,0.0020939438],"study_design_scores_gemma":[0.000039442424,0.00055152836,0.0017311813,0.000018258832,0.00004063164,0.0003939213,0.000028187773,0.0023170381,0.9923149,0.00013555135,0.002420916,0.00000860219],"about_ca_topic_score_codex":0.0002959495,"about_ca_topic_score_gemma":0.00038335958,"teacher_disagreement_score":0.0011044461,"about_ca_system_score_codex":0.0002997326,"about_ca_system_score_gemma":0.0003214825,"threshold_uncertainty_score":0.005390227},"labels":[],"label_agreement":null},{"id":"W2149848654","doi":"10.1128/jcm.40.4.1140-1145.2002","title":"<i>Enterococcus gilvus</i> sp. nov. and <i>Enterococcus pallens</i> sp. nov. Isolated from Human Clinical Specimens","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Biology; Enterococcus; Microbiology; Sequence analysis; Enterococcus faecalis; 16S ribosomal RNA; Bacteria; Genetics; Gene; Staphylococcus aureus; Antibiotics","score_opus":0.04820711885266418,"score_gpt":0.32723063138960085,"score_spread":0.2790235125369367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149848654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98104835,0.005248294,0.0035256403,0.00048043937,0.00032757036,0.00035288694,0.0046044295,0.00010711747,0.0043052444],"genre_scores_gemma":[0.9663173,0.001529347,0.012985596,0.0006515326,0.00013557529,0.00013516888,0.015428507,0.000029891919,0.00278707],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993691,0.00006100461,0.00012010854,0.00016903196,0.00014502979,0.00013582798],"domain_scores_gemma":[0.9993068,0.00008059114,0.000226687,0.00007306357,0.00019841712,0.00011440172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002897012,0.0007436568,0.00043141388,0.000466711,0.00025208143,0.000847223,0.00040353579,0.00065409887,0.0009886398],"category_scores_gemma":[0.0012384687,0.0002569682,0.00046026398,0.0006036291,0.0003007012,0.0004212186,0.00076069165,0.0006212208,0.0007495618],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030629605,0.00067409425,0.18976252,0.0017198521,0.00024585973,0.01099558,0.0012164644,0.0013033339,0.7149089,0.00094139605,0.004682365,0.0704867],"study_design_scores_gemma":[0.00019122254,0.0031102756,0.6878284,0.0004622893,0.00034041674,0.058866862,0.0025699644,0.0025123293,0.1967695,0.00077395636,0.046471324,0.00010341076],"about_ca_topic_score_codex":0.0030479305,"about_ca_topic_score_gemma":0.002209834,"teacher_disagreement_score":0.0030479305,"about_ca_system_score_codex":0.00030568737,"about_ca_system_score_gemma":0.00044944845,"threshold_uncertainty_score":0.0060604215},"labels":[],"label_agreement":null},{"id":"W2149879965","doi":"10.1128/jcm.01807-09","title":"Characterization of<i>Streptococcus milleri</i>Group Isolates from Expectorated Sputum of Adult Patients with Cystic Fibrosis","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; Calgary Laboratory Services","keywords":"Microbiology; Streptococcus anginosus; Biology; Streptococcus milleri; Sputum; Bacteroidaceae; 16S ribosomal RNA; Streptococcus; Bacteria; Genetics; Medicine; Pathology","score_opus":0.012788208972061519,"score_gpt":0.2895087149915375,"score_spread":0.276720506019476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149879965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99943024,0.00010631331,0.0001153426,0.000018211911,0.0000026626847,0.000014073624,0.00011742721,0.0000031776938,0.00019256877],"genre_scores_gemma":[0.9982139,0.00014135185,0.000762102,0.00005887282,0.000014831689,0.000016545378,0.00057098566,0.000004003882,0.00021740618],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997795,0.000030308782,0.00004294354,0.00004783964,0.000054374894,0.000045093337],"domain_scores_gemma":[0.9996984,0.000047807618,0.00009022998,0.000021297717,0.000074017014,0.000068358786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015513466,0.0002552066,0.0002819518,0.0006285449,0.00026760143,0.0003548879,0.0001126237,0.0003002297,0.0005108843],"category_scores_gemma":[0.00073399843,0.00010651954,0.00023975543,0.00040021085,0.00015765184,0.00015107867,0.00023566662,0.0002113003,0.00022591058],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005068403,0.00014918295,0.7630458,0.00008834381,0.00003509138,0.0023726078,0.0014115976,0.00013713671,0.2199499,0.000046628167,0.00022905116,0.012027863],"study_design_scores_gemma":[0.000011586468,0.00094412355,0.9741218,0.000022736902,0.000041609794,0.005908296,0.0010789256,0.00038342958,0.016139887,0.000021937592,0.0013158771,0.0000097778075],"about_ca_topic_score_codex":0.0022928822,"about_ca_topic_score_gemma":0.0018105782,"teacher_disagreement_score":0.0022928822,"about_ca_system_score_codex":0.00009561767,"about_ca_system_score_gemma":0.00014889384,"threshold_uncertainty_score":0.00455904},"labels":[],"label_agreement":null},{"id":"W2149893524","doi":"10.1128/jcm.39.10.3499-3504.2001","title":"Phospholipase Region of <i>Mycobacterium tuberculosis</i> Is a Preferential Locus for IS <i>6110</i> Transposition","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"Health Canada; Consejo Nacional de Ciencia y Tecnología","keywords":"Mycobacterium tuberculosis; Biology; Genetics; Insertion sequence; Gene; Polymerase chain reaction; Restriction fragment length polymorphism; Insertion; genomic DNA; Nucleic acid sequence; Sequence analysis; Molecular biology; Tuberculosis; Virology; Transposable element; Mutation; Medicine; Pathology","score_opus":0.07141327180587675,"score_gpt":0.3974166897798394,"score_spread":0.32600341797396265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149893524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99473685,0.00089533726,0.0021461153,0.0001084048,0.000017073646,0.000039125935,0.0005235691,0.000057176385,0.0014763419],"genre_scores_gemma":[0.9935184,0.00040870125,0.0027282357,0.00010496416,0.000019604286,0.000024366724,0.0018465308,0.00002156922,0.0013275782],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997372,0.00004145176,0.00002508512,0.00007096109,0.00007679576,0.00004862029],"domain_scores_gemma":[0.9995797,0.00006750476,0.00021983149,0.000034728462,0.00004059712,0.000057550278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001489637,0.00031589373,0.0002754968,0.00037870632,0.000215892,0.0004036156,0.00016349775,0.00040745424,0.0018271765],"category_scores_gemma":[0.00041565485,0.00019626647,0.00032997588,0.00049149274,0.00026560557,0.00013028277,0.00020943691,0.0005315641,0.0008975271],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001332678,0.00003730403,0.009348796,0.0000720389,0.0000109247,0.000312246,0.00008089161,0.000038091697,0.9862407,0.00009176191,0.00008917948,0.0035448056],"study_design_scores_gemma":[0.000041566265,0.00064489245,0.33788368,0.00010664208,0.00010113419,0.01175501,0.0003051365,0.00049346883,0.6355987,0.0002693231,0.012774364,0.00002604991],"about_ca_topic_score_codex":0.00073438004,"about_ca_topic_score_gemma":0.0006852934,"teacher_disagreement_score":0.0018271765,"about_ca_system_score_codex":0.00027894648,"about_ca_system_score_gemma":0.00022312983,"threshold_uncertainty_score":0.006112516},"labels":[],"label_agreement":null},{"id":"W2149924150","doi":"10.1128/jcm.43.8.4288-4292.2005","title":"Peritonitis Due to<i>Curvularia inaequalis</i>in an Elderly Patient Undergoing Peritoneal Dialysis and a Review of Six Cases of Peritonitis Associated with Other<i>Curvularia</i>spp","year":2005,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Peritonitis; Curvularia; Peritoneal dialysis; Continuous ambulatory peritoneal dialysis; Medicine; Surgery; Microbiology; Internal medicine; Biology","score_opus":0.07542404217463887,"score_gpt":0.4129495257850946,"score_spread":0.3375254836104557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149924150","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008978675,0.9888221,0.00023944478,0.00027122686,0.00014804659,0.000010728704,0.000025800102,0.000009678943,0.001494313],"genre_scores_gemma":[0.032292143,0.96585,0.0005088851,0.00036894265,0.00020347716,0.0000101548,0.00006427832,0.0000018031118,0.00070032984],"study_design_codex":"design_other","study_design_gemma":"case_report","domain_scores_codex":[0.9997911,0.000037611953,0.0000654442,0.000029766104,0.000057836754,0.000018364633],"domain_scores_gemma":[0.9997143,0.00011433045,0.000090650334,0.000006916887,0.000051545452,0.000022095506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027273153,0.00040861845,0.0007443527,0.0018398524,0.00020068244,0.00037346256,0.00039790344,0.0005347882,0.0007920937],"category_scores_gemma":[0.0006837747,0.00014063613,0.00034595383,0.0017535749,0.00024426728,0.0005841077,0.00021721818,0.0002801733,0.00044791898],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017897338,0.00009816683,0.017664075,0.029598739,0.00031391476,0.032468196,0.0007476936,0.00030950556,0.0081258835,0.00053515163,0.015118705,0.8948411],"study_design_scores_gemma":[0.000053753967,0.0009565776,0.09572774,0.012771293,0.001312644,0.46345368,0.0019208738,0.00028203434,0.0036342042,0.0007073893,0.4190889,0.00009096473],"about_ca_topic_score_codex":0.0013716135,"about_ca_topic_score_gemma":0.0024898895,"teacher_disagreement_score":0.0018398524,"about_ca_system_score_codex":0.00023831073,"about_ca_system_score_gemma":0.000539265,"threshold_uncertainty_score":0.0027272701},"labels":[],"label_agreement":null},{"id":"W2150014312","doi":"10.1128/jcm.42.7.3317-3320.2004","title":"Real-Time PCR Assay for Detection and Genotype Differentiation of <i>Giardia lamblia</i> in Stool Specimens","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Giardia lamblia; Biology; Genotype; Giardia; Feces; Microbiology; Real-time polymerase chain reaction; Virology; Molecular biology; Gene; Genetics","score_opus":0.022695211882532342,"score_gpt":0.32090995803006184,"score_spread":0.2982147461475295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150014312","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46328405,0.002822885,0.5182894,0.0007046513,0.0007250881,0.001250362,0.0027944043,0.003519599,0.006609682],"genre_scores_gemma":[0.38807017,0.001781076,0.58722377,0.0008767064,0.00021875101,0.0038002138,0.006543926,0.00035659331,0.01112879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99795365,0.0005782311,0.0001719586,0.00066687673,0.00042261934,0.00020670485],"domain_scores_gemma":[0.99836975,0.0007454207,0.00022149965,0.00018385852,0.0003344277,0.00014508967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016150459,0.0012461019,0.0012205075,0.0010442372,0.00034001723,0.0007733149,0.0011533634,0.0008199481,0.003160907],"category_scores_gemma":[0.0021369357,0.0006923734,0.00073496986,0.0006094708,0.0008648542,0.00054271054,0.00039764462,0.0018820874,0.001563948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005170912,0.00014440292,0.001289922,0.00012043714,0.000018813125,0.000068246896,0.0001246871,0.00016369019,0.9907855,0.00033977805,0.00036782818,0.0060596517],"study_design_scores_gemma":[0.00030200783,0.0025975965,0.0060565555,0.00009492645,0.00014118798,0.0009156589,0.00012311629,0.014088657,0.9640149,0.0005802132,0.011006256,0.000078941994],"about_ca_topic_score_codex":0.00020286157,"about_ca_topic_score_gemma":0.00032436254,"teacher_disagreement_score":0.003160907,"about_ca_system_score_codex":0.00043529164,"about_ca_system_score_gemma":0.00044963634,"threshold_uncertainty_score":0.010574222},"labels":[],"label_agreement":null},{"id":"W2150071247","doi":"10.1128/jcm.01305-07","title":"Yield of Stool Culture with Isolate Toxin Testing versus a Two-Step Algorithm Including Stool Toxin Testing for Detection of Toxigenic <i>Clostridium difficile</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Consortium canadien en neurodégénérescence associée au vieillissement; Johns Hopkins University","keywords":"Clostridium difficile; Clostridium difficile toxin A; Toxin; Microbiology; Clostridium difficile toxin B; Glutamate dehydrogenase; Gold standard (test); Biology; Medicine; Antibiotics; Internal medicine","score_opus":0.11774451563637227,"score_gpt":0.39678708019118974,"score_spread":0.27904256455481746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150071247","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97721887,0.001158917,0.018991271,0.00051272596,0.00008318482,0.0002808117,0.00015549258,0.00031238806,0.0012862735],"genre_scores_gemma":[0.9619019,0.0002905096,0.036458105,0.0003471718,0.00006248955,0.00013341353,0.0004620683,0.000046521178,0.00029791976],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9893497,0.004077881,0.0010665407,0.0014810998,0.00350266,0.0005221579],"domain_scores_gemma":[0.9750352,0.015509595,0.0029032938,0.001974851,0.003562714,0.0010143891],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009551334,0.0011046276,0.0015377552,0.0011772807,0.00021613152,0.0016298828,0.0010832399,0.001263513,0.00073964946],"category_scores_gemma":[0.035676476,0.0005908779,0.0009116673,0.0007488942,0.0004354481,0.0011338368,0.0011158575,0.0010842661,0.0004214785],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012769725,0.0016756044,0.7396379,0.00043525142,0.00064216275,0.0005076625,0.0002956602,0.019661719,0.02346819,0.00029936625,0.0010729494,0.19953375],"study_design_scores_gemma":[0.0014274577,0.031895436,0.6489831,0.00020071116,0.0015106413,0.0053379685,0.00026391467,0.24778356,0.058322918,0.0009376731,0.003017139,0.0003194662],"about_ca_topic_score_codex":0.00097065925,"about_ca_topic_score_gemma":0.0012822396,"teacher_disagreement_score":0.009551334,"about_ca_system_score_codex":0.0010082897,"about_ca_system_score_gemma":0.0012747907,"threshold_uncertainty_score":0.05051285},"labels":[],"label_agreement":null},{"id":"W2150189009","doi":"10.1128/jcm.41.1.273-278.2003","title":"Nonencapsulated <i>Neisseria meningitidis</i> Strain Produces Amylopectin from Sucrose: Altering the Concept for Differentiation between <i>N. meningitidis</i> and <i>N. polysaccharea</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"U.S. Food and Drug Administration","keywords":"Neisseria meningitidis; Microbiology; Biology; Amylopectin; Strain (injury); Genetics; Bacteria; Biochemistry; Starch; Amylose","score_opus":0.03799018965597934,"score_gpt":0.3215849596091608,"score_spread":0.28359476995318145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150189009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99827504,0.00021529141,0.00061252376,0.000027760034,0.000016463628,0.000017163029,0.00025310376,0.000010844208,0.00057179335],"genre_scores_gemma":[0.9938984,0.00029329283,0.0038225283,0.00003342277,0.0000087526,0.00002589921,0.0010811491,0.000016347829,0.0008201686],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99984336,0.000018983452,0.000026289343,0.00003360012,0.000051636045,0.000026058897],"domain_scores_gemma":[0.99985695,0.00002149959,0.000045200723,0.000029321398,0.000019393332,0.00002758018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012358488,0.0005520307,0.00022828195,0.00016809213,0.00014685161,0.00029420416,0.000326702,0.00019858938,0.0005165824],"category_scores_gemma":[0.0002065851,0.00013911935,0.00029288267,0.00016943288,0.00019282631,0.00016276419,0.00030354818,0.00043080957,0.00021099266],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007294545,0.00002740102,0.0010244449,0.000023046461,0.000006739506,0.00007613957,0.000018982846,0.000021443386,0.9981737,0.000026581163,0.000013465103,0.00051510456],"study_design_scores_gemma":[0.000014914069,0.0006260202,0.026504086,0.0000138199075,0.00005054312,0.0009773468,0.00013330596,0.00045896528,0.96975785,0.00003688326,0.0014152516,0.000011129533],"about_ca_topic_score_codex":0.004193129,"about_ca_topic_score_gemma":0.00413995,"teacher_disagreement_score":0.004193129,"about_ca_system_score_codex":0.00027387933,"about_ca_system_score_gemma":0.00023009216,"threshold_uncertainty_score":0.008337438},"labels":[],"label_agreement":null},{"id":"W2150322613","doi":"10.1128/jcm.40.4.1277-1282.2002","title":"Evolution of the IS <i>6110-</i> Based Restriction Fragment Length Polymorphism Pattern during the Transmission of <i>Mycobacterium tuberculosis</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Research Foundation; GlaxoSmithKline","keywords":"Restriction fragment length polymorphism; Mycobacterium tuberculosis; Biology; Tuberculosis; Genetics; Virology; Polymorphism (computer science); Terminal restriction fragment length polymorphism; Mycobacterium; Genotype; Medicine; Bacteria; Gene; Pathology","score_opus":0.03324958878160151,"score_gpt":0.32070169985694574,"score_spread":0.28745211107534424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150322613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991208,0.0000904457,0.00042080475,0.000021546177,0.0000026453502,0.0000052696146,0.00008521402,0.000004358418,0.0002488893],"genre_scores_gemma":[0.99932146,0.000040487506,0.00031869623,0.000015364101,0.0000031205373,0.000004640515,0.00018688536,0.0000025438205,0.00010681942],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99960834,0.00012172535,0.000028157194,0.00010404932,0.00006407841,0.00007363791],"domain_scores_gemma":[0.99848574,0.0004440639,0.00066348724,0.00009412117,0.00018143353,0.00013127511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078505743,0.00013357977,0.0001681832,0.00050849444,0.00015264763,0.00058700674,0.00021811287,0.00043154965,0.0005364709],"category_scores_gemma":[0.0024023594,0.00016532929,0.0002208966,0.00045139692,0.00024983636,0.00023099515,0.00011796284,0.00037386938,0.00033896408],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008475954,0.00013868122,0.88331,0.000029568444,0.00007164471,0.0004044384,0.00048103518,0.00081213797,0.10264507,0.00018896311,0.00016457874,0.010906376],"study_design_scores_gemma":[0.0000062838253,0.00027569223,0.9923787,0.000007785002,0.00002359564,0.00073696795,0.0001629699,0.0017395994,0.0043184864,0.000062619816,0.0002772957,0.000009947241],"about_ca_topic_score_codex":0.0013740472,"about_ca_topic_score_gemma":0.0007882486,"teacher_disagreement_score":0.0013740472,"about_ca_system_score_codex":0.00028344794,"about_ca_system_score_gemma":0.0001359698,"threshold_uncertainty_score":0.004151821},"labels":[],"label_agreement":null},{"id":"W2150469347","doi":"10.1128/jcm.44.3.1115-1119.2006","title":"Use of Sno Strip Filter-Paper Wicks for Collection of Genital-Tract Samples Allows Reproducible Determination of Human Immunodeficiency Virus Type 1 (HIV-1) RNA Viral Load with a Commercial HIV-1 Viral Load Assay","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; BC Centre for Disease Control; University of British Columbia; Royal Columbian Hospital; St. Paul's Hospital; Children's & Women's Health Centre of British Columbia; Providence Health Care","funders":"Canadian Foundation for AIDS Research","keywords":"Viral load; Cervix; Vagina; Human immunodeficiency virus (HIV); Virology; Reproducibility; Medicine; Coefficient of variation; Chromatography; Chemistry; Internal medicine; Surgery; Cancer","score_opus":0.07961652756869841,"score_gpt":0.3684314025011007,"score_spread":0.28881487493240227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150469347","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87436426,0.001409733,0.11502552,0.00014748909,0.00037180094,0.0012322522,0.0016538991,0.0009639304,0.004831104],"genre_scores_gemma":[0.7320664,0.0014844623,0.25258037,0.00039431138,0.00015826375,0.0022538574,0.006241725,0.00036461584,0.004455925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954899,0.0011600164,0.00048515992,0.0007872389,0.001890251,0.00018758046],"domain_scores_gemma":[0.99468154,0.0018562963,0.0008776446,0.0011342887,0.0012989215,0.00015136128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031880082,0.00071559416,0.00083215395,0.00067100755,0.00043938324,0.0008388742,0.00053929683,0.00037868932,0.0013745964],"category_scores_gemma":[0.007424292,0.0004178651,0.00033570678,0.00082784094,0.00057506753,0.00038663432,0.00043913283,0.00040046105,0.00089993636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017109563,0.0007411165,0.06300467,0.00034924652,0.000119458244,0.00013915046,0.00046966327,0.00052800647,0.85741454,0.00022747112,0.001580429,0.073715314],"study_design_scores_gemma":[0.0001538648,0.0045647784,0.3939948,0.00011271201,0.00024140031,0.002235543,0.0003731632,0.006692675,0.5687795,0.00048403407,0.022255404,0.00011207619],"about_ca_topic_score_codex":0.0014959972,"about_ca_topic_score_gemma":0.002920849,"teacher_disagreement_score":0.0031880082,"about_ca_system_score_codex":0.00023554015,"about_ca_system_score_gemma":0.00059243233,"threshold_uncertainty_score":0.016860008},"labels":[],"label_agreement":null},{"id":"W2150612488","doi":"10.1128/jcm.38.10.3759-3762.2000","title":"Prevalence of O1/K1- and O2/K3-Reactive <i>Actinobacillus suis</i> in Healthy and Diseased Swine","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institute for Biological Sciences; University of Guelph","funders":"","keywords":"Antiserum; Serotype; Microbiology; Biology; Virulence; Typing; Actinobacillus pleuropneumoniae; Polyclonal antibodies; Antigen; Streptococcus suis; Actinobacillus; Virology; Strain (injury); Lipopolysaccharide; Bacteria; Gene; Immunology; Genetics","score_opus":0.03129883122731204,"score_gpt":0.369171120711958,"score_spread":0.337872289484646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150612488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997495,0.000047113837,0.000019715877,0.000004159941,9.761189e-7,0.0000027552753,0.00006575463,0.0000020507596,0.000107942906],"genre_scores_gemma":[0.99955994,0.000053985856,0.000062328145,0.000014502504,0.0000015971044,0.0000021297133,0.00022042102,0.0000012667482,0.00008384226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994966,0.0000364583,0.0000680377,0.00012520708,0.00011984581,0.00015387831],"domain_scores_gemma":[0.99916494,0.00007882575,0.00030561644,0.000037367547,0.00017938134,0.00023384026],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027979826,0.00032053684,0.00026170182,0.0012748089,0.00044358874,0.0006288823,0.0002716548,0.0005044213,0.000485308],"category_scores_gemma":[0.0005390199,0.0002891766,0.00024010474,0.0005786571,0.0009156378,0.00024312784,0.0002887961,0.00021873807,0.00011427027],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027357152,0.000037305792,0.9532314,0.000030060097,0.000036060217,0.0003112069,0.00034884026,0.000050607,0.044560853,0.000016648723,0.00004115944,0.0010623308],"study_design_scores_gemma":[0.000003290614,0.00013967755,0.9980155,0.000003632058,0.000012356141,0.00030036765,0.00025610763,0.000041787895,0.0011387588,0.0000042179286,0.00008093628,0.000003287214],"about_ca_topic_score_codex":0.05268682,"about_ca_topic_score_gemma":0.0711616,"teacher_disagreement_score":0.05268682,"about_ca_system_score_codex":0.0010421894,"about_ca_system_score_gemma":0.00062020856,"threshold_uncertainty_score":0.10476029},"labels":[],"label_agreement":null},{"id":"W2150640518","doi":"10.1128/jcm.43.1.488-490.2005","title":"Analysis of Replication Kinetics of the Human Metapneumovirus in Different Cell Lines by Real-Time PCR","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Human metapneumovirus; Metapneumovirus; TaqMan; Virology; Vero cell; Biology; Cell culture; Real-time polymerase chain reaction; Respiratory tract; Kinetics; Respiratory tract infections; Respiratory system; Gene; Virus; Genetics","score_opus":0.0805389231828816,"score_gpt":0.4467701348255102,"score_spread":0.3662312116426286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150640518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93620384,0.0033656901,0.05420254,0.00015416087,0.00015470521,0.00046160558,0.003210967,0.0005134963,0.001732941],"genre_scores_gemma":[0.84707284,0.0030563853,0.1337506,0.00019704347,0.00008309922,0.0016548833,0.008659787,0.00018447942,0.005340834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879587,0.0003337893,0.0001451231,0.00028411392,0.00030563812,0.00013544619],"domain_scores_gemma":[0.9986016,0.0008778713,0.0001245941,0.00013455334,0.0002193698,0.0000418909],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011672737,0.0005541077,0.00061599974,0.0006715252,0.00022225059,0.0006900234,0.0004501598,0.0005549529,0.0014388128],"category_scores_gemma":[0.0014758173,0.0003731633,0.00048387118,0.0006528682,0.0003634641,0.000480981,0.00019751677,0.0011666018,0.0009492469],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002703383,0.000095862495,0.0016216834,0.00007944468,0.000018188686,0.000030033523,0.00017831009,0.00021142239,0.9945582,0.0000880612,0.000073298725,0.002775301],"study_design_scores_gemma":[0.00002510489,0.0007666405,0.006255052,0.000012683603,0.000045430308,0.00017066505,0.00009858307,0.0049940036,0.9858554,0.00009971166,0.0016454419,0.00003120611],"about_ca_topic_score_codex":0.00079734856,"about_ca_topic_score_gemma":0.000595476,"teacher_disagreement_score":0.0014388128,"about_ca_system_score_codex":0.00034907152,"about_ca_system_score_gemma":0.0001938265,"threshold_uncertainty_score":0.0061731935},"labels":[],"label_agreement":null},{"id":"W2151279827","doi":"10.1128/jcm.40.4.1230-1236.2002","title":"Phenotypic and Molecular Characterization of Clinical Isolates of <i>Mycobacterium elephantis</i> from Human Specimens","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Ministry of Health and Long Term Care; Health Canada","funders":"","keywords":"GenBank; Biology; 16S ribosomal RNA; Microbiology; Mycobacterium; Ribosomal RNA; Accession number (library science); Sequence analysis; Gene; Genetics; Bacteria","score_opus":0.05791803830234531,"score_gpt":0.3744518861271189,"score_spread":0.31653384782477356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151279827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99777716,0.0005261218,0.00034826156,0.00009400156,0.000011293766,0.00006953725,0.00047793324,0.000008101134,0.0006875983],"genre_scores_gemma":[0.99534756,0.0007465657,0.0013451485,0.00011640785,0.00003265111,0.00003418744,0.0016635543,0.0000075383346,0.00070629414],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996101,0.000037517988,0.000048288584,0.00010047883,0.00012479308,0.00007885365],"domain_scores_gemma":[0.9996088,0.00006020916,0.0000790515,0.000040527662,0.0001393652,0.00007204018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019203973,0.00032209177,0.00031748094,0.00051496126,0.00055624393,0.00048768483,0.00026825716,0.0004419576,0.00044861142],"category_scores_gemma":[0.0014413135,0.00018860889,0.0001649325,0.00050655816,0.0004224517,0.00017353221,0.00023323856,0.00029519567,0.000283767],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012177932,0.00034725032,0.45914343,0.00051594217,0.000050142648,0.011197331,0.002379173,0.0003929128,0.49588594,0.00010998036,0.0010016066,0.027758496],"study_design_scores_gemma":[0.00005461888,0.00095060776,0.92606705,0.000077622935,0.00007889097,0.020365892,0.001845785,0.00034224975,0.044596866,0.00006500103,0.005532103,0.000023248469],"about_ca_topic_score_codex":0.028435089,"about_ca_topic_score_gemma":0.02679861,"teacher_disagreement_score":0.028435089,"about_ca_system_score_codex":0.00056767376,"about_ca_system_score_gemma":0.0006392085,"threshold_uncertainty_score":0.05653912},"labels":[],"label_agreement":null},{"id":"W2151326498","doi":"10.1128/jcm.43.2.925-927.2005","title":"Quality Control Guidelines for Testing Gram-Negative Control Strains with Polymyxin B and Colistin (Polymyxin E) by Standardized Methods","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; Medical Center, University of Rochester; University of Alberta; Cleveland Clinic Foundation; University of Washington; University of Rochester; Cleveland Clinic","keywords":"Colistin; Polymyxin; Polymyxin B; Microbiology; Pseudomonas aeruginosa; Antimicrobial; Bacilli; Gram; Antibiotics; Medicine; Biology; Bacteria","score_opus":0.09382553940255804,"score_gpt":0.4763240741481196,"score_spread":0.38249853474556156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151326498","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07002788,0.008497591,0.8450236,0.0060260617,0.0024078607,0.03155775,0.004789642,0.0047568646,0.02691286],"genre_scores_gemma":[0.03447507,0.0031930637,0.92287296,0.0020528235,0.00041752518,0.022673829,0.007940282,0.00044387672,0.005930422],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.8948901,0.049867436,0.01782254,0.0028943727,0.032715645,0.0018097898],"domain_scores_gemma":[0.88257396,0.02592551,0.008990572,0.02023027,0.06086605,0.0014135733],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06108592,0.0026700676,0.0018547757,0.0076208604,0.0039356556,0.0032161097,0.008617976,0.0062413597,0.003373475],"category_scores_gemma":[0.070720986,0.0022377858,0.0021769747,0.0039808555,0.0034197778,0.0014384435,0.0019292047,0.0036332118,0.006034646],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011317399,0.005214386,0.020940708,0.0054124584,0.0003066571,0.0018267038,0.0044722804,0.0050367094,0.5933396,0.01293773,0.07272439,0.27665663],"study_design_scores_gemma":[0.0007173064,0.0056218323,0.048120208,0.005131234,0.0006144083,0.0052282363,0.002847467,0.013203278,0.59417564,0.005834861,0.31802565,0.0004798603],"about_ca_topic_score_codex":0.0062607317,"about_ca_topic_score_gemma":0.008097233,"teacher_disagreement_score":0.06108592,"about_ca_system_score_codex":0.0015178734,"about_ca_system_score_gemma":0.00781587,"threshold_uncertainty_score":0.32305712},"labels":[],"label_agreement":null},{"id":"W2151850577","doi":"10.1128/jcm.01474-06","title":"Phylogenetic Comparisons Reveal Multiple Acquisitions of the Toxin Genes by Enterotoxigenic <i>Escherichia coli</i> Strains of Different Evolutionary Lineages","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; University of Birmingham; Wellcome Trust","keywords":"Enterotoxigenic Escherichia coli; Biology; Microbiology; Virulence; Multilocus sequence typing; Escherichia coli; Diarrhea; Pathogen; Phylogenetic tree; Enterotoxin; Toxin; Shiga toxin; Pathovar; Gene; Genetics; Bacteria; Genotype; Pseudomonas aeruginosa","score_opus":0.02246482068054887,"score_gpt":0.3172218417544278,"score_spread":0.2947570210738789,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151850577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989697,0.00016282995,0.0003690826,0.000019147279,0.0000030993813,0.0000058002774,0.00011824991,0.000004115457,0.0003481209],"genre_scores_gemma":[0.99852353,0.0001451649,0.0005244657,0.000045100292,0.0000041782155,0.000006433276,0.00058384106,0.0000049229066,0.00016230681],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999597,0.00009576647,0.000042248645,0.00007645851,0.000073160314,0.000115256385],"domain_scores_gemma":[0.99926776,0.00017964616,0.00022992394,0.00006095574,0.00012129875,0.00014044545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003365058,0.0002459372,0.00030010092,0.0007212218,0.00029251818,0.00047686894,0.00018015438,0.00034635776,0.0006621024],"category_scores_gemma":[0.00083355076,0.0001532406,0.00025874938,0.0007580966,0.00020459875,0.00021978274,0.00041788822,0.0004960648,0.0002489525],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017173003,0.00019604256,0.15348333,0.00012985655,0.00016927136,0.0006200558,0.00072370784,0.00053267047,0.8286112,0.00027484103,0.00014013174,0.013401536],"study_design_scores_gemma":[0.000027857872,0.000762653,0.96345663,0.00004492914,0.00016273087,0.0028296611,0.0011168246,0.0011716204,0.02782785,0.00016120386,0.0024137588,0.000024307594],"about_ca_topic_score_codex":0.0005948931,"about_ca_topic_score_gemma":0.00052745605,"teacher_disagreement_score":0.0007212218,"about_ca_system_score_codex":0.00015661739,"about_ca_system_score_gemma":0.0001329453,"threshold_uncertainty_score":0.0022149086},"labels":[],"label_agreement":null},{"id":"W2151916354","doi":"10.1128/jcm.02436-06","title":"Development of a Respiratory Virus Panel Test for Detection of Twenty Human Respiratory Viruses by Use of Multiplex PCR and a Fluid Microbead-Based Assay","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":365,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Virology; Multiplex; Rhinovirus; Human metapneumovirus; Virus; Biology; Human bocavirus; Multiplex polymerase chain reaction; Coronavirus; Influenza A virus; Enterovirus; Polymerase chain reaction; Respiratory system; Respiratory tract infections; Medicine; Coronavirus disease 2019 (COVID-19)","score_opus":0.2793139903107201,"score_gpt":0.4618924733429814,"score_spread":0.18257848303226132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151916354","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.46227762,0.0047511538,0.50812936,0.00063715636,0.00048726358,0.0045693466,0.004621067,0.0046150484,0.009912067],"genre_scores_gemma":[0.4397378,0.0012619671,0.54465336,0.000996903,0.00013516135,0.0038204174,0.0039607477,0.000102982645,0.005330732],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960759,0.00077256805,0.00023956335,0.0009810404,0.001690572,0.00024027654],"domain_scores_gemma":[0.9989507,0.00036297803,0.000117574775,0.0000595907,0.00038226403,0.00012686243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033335292,0.0014594712,0.0011853059,0.0028637554,0.00035134883,0.00076094863,0.000996489,0.0011024278,0.0017860705],"category_scores_gemma":[0.0021693066,0.00090800034,0.0007455429,0.00089540536,0.0003344619,0.0009402972,0.0009265694,0.0008634416,0.001147595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014185869,0.001380643,0.09163271,0.00051408715,0.00032280054,0.0006186895,0.00044342937,0.0028430936,0.68787295,0.00083523284,0.003833342,0.20828432],"study_design_scores_gemma":[0.0007546113,0.014478087,0.1708366,0.00035119287,0.00072206755,0.0063171806,0.00028843794,0.10792632,0.6654369,0.0011416698,0.031354986,0.0003918045],"about_ca_topic_score_codex":0.0014236105,"about_ca_topic_score_gemma":0.0025033727,"teacher_disagreement_score":0.0033335292,"about_ca_system_score_codex":0.00048025118,"about_ca_system_score_gemma":0.000805654,"threshold_uncertainty_score":0.017629564},"labels":[],"label_agreement":null},{"id":"W2152063185","doi":"10.1128/jcm.06025-11","title":"Molecular Epidemiology over an 11-Year Period (2000 to 2010) of Extended-Spectrum β-Lactamase-Producing Escherichia coli Causing Bacteremia in a Centralized Canadian Region","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Escherichia coli; Bacteremia; Microbiology; Molecular epidemiology; Enterobacteriaceae; Epidemiology; Enterobacteriaceae Infections; Biology; Medicine; Genetics; Antibiotics; Genotype; Gene; Internal medicine","score_opus":0.050987522057042704,"score_gpt":0.33183831051931895,"score_spread":0.28085078846227624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152063185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997912,0.00022935812,0.00009915416,0.000073259725,0.000005222708,0.000040492065,0.0010842048,0.000008376563,0.0005478472],"genre_scores_gemma":[0.9981141,0.0003660479,0.00023766219,0.00006055974,0.00000590764,0.000013571609,0.0008937522,0.0000028978523,0.00030541758],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989961,0.000043968168,0.00004464651,0.00017197806,0.00037914191,0.00036418176],"domain_scores_gemma":[0.9980708,0.000068529625,0.00041765167,0.00004268713,0.0008310139,0.0005693262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048654678,0.00062189763,0.00043282512,0.0024064505,0.0024227675,0.0012707218,0.0013734101,0.0006443718,0.00085798773],"category_scores_gemma":[0.0013188042,0.00050643703,0.00052638195,0.0040938123,0.0010783934,0.00042693145,0.00090964127,0.0006450674,0.0001368324],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006429633,0.000038780734,0.99533045,0.000028258553,0.00004145879,0.00021926302,0.00046863625,0.00016740621,0.00094607874,0.00003364538,0.00031476974,0.0023469015],"study_design_scores_gemma":[0.0000033804915,0.0000404577,0.9985429,0.0000095360465,0.000012179482,0.00015588161,0.0007406106,0.00015987984,0.000065703345,0.0000051732395,0.0002563087,0.0000079084275],"about_ca_topic_score_codex":0.98744375,"about_ca_topic_score_gemma":0.991297,"teacher_disagreement_score":0.0251629,"about_ca_system_score_codex":0.0251629,"about_ca_system_score_gemma":0.028549401,"threshold_uncertainty_score":0.18257046},"labels":[],"label_agreement":null},{"id":"W2152081264","doi":"10.1128/jcm.02443-12","title":"Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat (MIRU-VNTR) Genotyping of Mycobacterium intracellulare for Strain Comparison with Establishment of a PCR-Based Database","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"bioMérieux; Amon G. Carter Foundation","keywords":"Variable number tandem repeat; Biology; Genotyping; Pulsed-field gel electrophoresis; Multiplex polymerase chain reaction; Genotype; Tandem repeat; Genetics; Population; Amplicon; Polymerase chain reaction; Gene; Medicine; Genome","score_opus":0.07483364884792523,"score_gpt":0.3919459755391528,"score_spread":0.3171123266912276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152081264","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9766831,0.0008199289,0.020649813,0.0000517921,0.000019155148,0.00017747517,0.0006575449,0.00007870953,0.000862473],"genre_scores_gemma":[0.9293449,0.00042451895,0.06773887,0.00007462382,0.000023887402,0.0002370776,0.0016797193,0.00003916635,0.00043712542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898845,0.00036408036,0.0001521585,0.00020503107,0.00022079388,0.000069400194],"domain_scores_gemma":[0.9993787,0.00023308577,0.00013039263,0.000107032734,0.000106561594,0.00004428587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089367165,0.0003588748,0.0005534025,0.0010894964,0.00019399644,0.00029849983,0.0002814332,0.00033294407,0.0005939317],"category_scores_gemma":[0.0016605367,0.00015934708,0.00029136616,0.00048561342,0.00016208352,0.00025505334,0.00029055975,0.00027928202,0.0003731905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006412518,0.00042002773,0.14687821,0.00020031419,0.00007106087,0.0005767451,0.00040416836,0.0007421504,0.7844321,0.00025251575,0.00026764095,0.065113895],"study_design_scores_gemma":[0.00009880253,0.0033203834,0.6006341,0.00014887199,0.00019991235,0.0066293203,0.000413213,0.009619846,0.37102863,0.00056837796,0.0072929203,0.00004559945],"about_ca_topic_score_codex":0.0002968515,"about_ca_topic_score_gemma":0.00047182856,"teacher_disagreement_score":0.0010894964,"about_ca_system_score_codex":0.00011545118,"about_ca_system_score_gemma":0.00016487385,"threshold_uncertainty_score":0.004726231},"labels":[],"label_agreement":null},{"id":"W2152384269","doi":"10.1128/jcm.01220-10","title":"Enteric Campylobacteria and RNA Viruses Associated with Healthy and Diarrheic Humans in the Chinook Health Region of Southwestern Alberta, Canada","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Chinook Regional Hospital; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Advanced Foods and Materials Network","keywords":"Virology; Biology; Medicine; Geography","score_opus":0.04688271081799518,"score_gpt":0.37203742962021397,"score_spread":0.3251547188022188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152384269","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975176,0.0004906444,0.000042036616,0.00010506525,0.000005216603,0.000021414175,0.00062229304,0.0000053590397,0.0011903682],"genre_scores_gemma":[0.997979,0.00040537945,0.0001561744,0.000084018524,0.000004908847,0.000006235244,0.00054189976,0.0000020175341,0.0008204602],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99967027,0.000022713426,0.000016814021,0.000045651053,0.00012568003,0.00011880074],"domain_scores_gemma":[0.9993961,0.000031745214,0.00010320753,0.000015447438,0.00025642253,0.00019717736],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023190588,0.00029452972,0.00021580122,0.0012984638,0.0024739502,0.0007534354,0.00052816514,0.0002505785,0.0011487735],"category_scores_gemma":[0.00048558682,0.00025920075,0.000180977,0.0019891502,0.0009079752,0.0001587659,0.00046567337,0.00023665084,0.0000965503],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012339771,0.000020846612,0.9915523,0.000044383665,0.000026939393,0.0004555143,0.0011981294,0.0000728241,0.0014222644,0.000054266548,0.00059895444,0.004430266],"study_design_scores_gemma":[0.0000057027705,0.000023242252,0.9978259,0.000011042116,0.000008627193,0.00015100192,0.0014231444,0.00008892934,0.00006287911,0.000009452176,0.00038519263,0.00000489862],"about_ca_topic_score_codex":0.9885643,"about_ca_topic_score_gemma":0.9955924,"teacher_disagreement_score":0.012596527,"about_ca_system_score_codex":0.012596527,"about_ca_system_score_gemma":0.010036167,"threshold_uncertainty_score":0.09139466},"labels":[],"label_agreement":null},{"id":"W2152712820","doi":"10.1128/jcm.00449-08","title":"Multicenter Evaluation of the New Vitek 2 <i>Neisseria</i> - <i>Haemophilus</i> Identification Card","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"16S ribosomal RNA; Neisseria; Microbiology; Fastidious organism; Biology; Haemophilus; Reproducibility; Clinical microbiology; Bacteria; Chromatography; Chemistry; Genetics","score_opus":0.07070086860571426,"score_gpt":0.3597378978410252,"score_spread":0.28903702923531094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152712820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825911,0.0018373635,0.008188175,0.00041238358,0.00023119766,0.0020195316,0.0021572672,0.0002771333,0.0022859205],"genre_scores_gemma":[0.96583617,0.0006061494,0.021769576,0.00055476493,0.000111253576,0.0010497046,0.007743607,0.00012595266,0.0022028056],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9806459,0.008937357,0.0013543104,0.0029734608,0.005275506,0.00081339217],"domain_scores_gemma":[0.9866108,0.002307367,0.0022343996,0.0012186634,0.006231888,0.001396946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.038967624,0.0010105786,0.00078819756,0.0006804379,0.0005439581,0.0018915659,0.0022062957,0.0012100927,0.002090382],"category_scores_gemma":[0.01554899,0.00048559278,0.00057365955,0.0006455,0.00089652365,0.0010647466,0.0013213457,0.001240777,0.0007178304],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.13424091,0.01132444,0.24723053,0.001245655,0.0007847176,0.0003881096,0.001765506,0.005198889,0.33932248,0.0012375995,0.01080299,0.24645814],"study_design_scores_gemma":[0.012289711,0.23931469,0.49926645,0.00030497924,0.0009177971,0.0021754329,0.0006137837,0.012493143,0.19247328,0.00018633442,0.039748862,0.0002155008],"about_ca_topic_score_codex":0.002049169,"about_ca_topic_score_gemma":0.0012070743,"teacher_disagreement_score":0.038967624,"about_ca_system_score_codex":0.0018663681,"about_ca_system_score_gemma":0.0017438293,"threshold_uncertainty_score":0.20608294},"labels":[],"label_agreement":null},{"id":"W2152897917","doi":"10.1128/jcm.02055-05","title":"Comparison of Flocked and Rayon Swabs for Collection of Respiratory Epithelial Cells from Uninfected Volunteers and Symptomatic Patients","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":187,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Medicine; Respiratory system; Sampling (signal processing); Clinical microbiology; Pathology; Microbiology; Internal medicine; Biology","score_opus":0.032925439417732745,"score_gpt":0.36171673283235284,"score_spread":0.3287912934146201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152897917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984346,0.00045307208,0.0003965552,0.00002781562,0.000034626475,0.0000661731,0.00010592297,0.000008220815,0.00047298754],"genre_scores_gemma":[0.99570686,0.0006108264,0.0021830061,0.00010201127,0.000059168953,0.00008516714,0.00090743334,0.00001280755,0.000332816],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853194,0.00040769437,0.00023383254,0.00023366159,0.00040051198,0.00019236817],"domain_scores_gemma":[0.9978028,0.00090227986,0.00022463966,0.00016008773,0.0005852879,0.0003247707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001492133,0.0007079084,0.00062037504,0.0012926476,0.00056128233,0.00077836704,0.0003325691,0.0006231691,0.0009893676],"category_scores_gemma":[0.0049013593,0.00040976546,0.00030899962,0.0005818934,0.00065205886,0.0004540224,0.00045807552,0.00036669127,0.00048070762],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0090290615,0.000725283,0.674058,0.0006101508,0.00022647865,0.0026795873,0.0034441531,0.00016576423,0.28191686,0.0001235771,0.00054942386,0.026471619],"study_design_scores_gemma":[0.0001199458,0.0049928613,0.96174884,0.000081152655,0.00016194714,0.00401473,0.0019527625,0.00041160593,0.025455235,0.000040515442,0.0009913367,0.000029123794],"about_ca_topic_score_codex":0.00137188,"about_ca_topic_score_gemma":0.0028485737,"teacher_disagreement_score":0.001492133,"about_ca_system_score_codex":0.0002276438,"about_ca_system_score_gemma":0.0003811153,"threshold_uncertainty_score":0.007891238},"labels":[],"label_agreement":null},{"id":"W2152915987","doi":"10.1128/jcm.43.6.2996-2997.2005","title":"Extraction of <i>Mycobacterium tuberculosis</i> DNA: a Question of Containment","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Tuberculosis; Mycobacterium tuberculosis; DNA; DNA profiling; Biology; DNA extraction; Restriction fragment length polymorphism; Microbiology; Mycobacterium; Mycobacterium tuberculosis complex; Virology; Polymerase chain reaction; Genetics; Medicine; Bacteria; Gene; Pathology","score_opus":0.04251666845576329,"score_gpt":0.4213102204207462,"score_spread":0.3787935519649829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152915987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5522378,0.019023769,0.3637528,0.053251866,0.0010846055,0.00063136336,0.00052554643,0.00083656784,0.008655706],"genre_scores_gemma":[0.81686735,0.0059115035,0.16436045,0.0067814286,0.0005709914,0.0005211311,0.0009652472,0.0004930179,0.0035289167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98899186,0.0065921308,0.0008300706,0.0007085292,0.0021033227,0.00077410426],"domain_scores_gemma":[0.97183484,0.015086344,0.003883487,0.0044210525,0.0039574653,0.00081687013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011871157,0.00041946932,0.0011666424,0.00062191096,0.0008275415,0.0026006424,0.0017419438,0.0018607086,0.00074761605],"category_scores_gemma":[0.030430676,0.0005677187,0.00040397976,0.0005282691,0.0026892333,0.0038161431,0.0009354776,0.0022647046,0.0014393348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005323072,0.00028785545,0.023619058,0.0010134676,0.000070091235,0.0011420038,0.0020539518,0.0010983386,0.8719895,0.020432228,0.0037567387,0.07400446],"study_design_scores_gemma":[0.000060989754,0.0013620147,0.019678287,0.0010535337,0.000093228715,0.0047005103,0.0023536119,0.0043137884,0.9115903,0.018329507,0.036324453,0.00013981201],"about_ca_topic_score_codex":0.0010950727,"about_ca_topic_score_gemma":0.0013694057,"teacher_disagreement_score":0.011871157,"about_ca_system_score_codex":0.00076053216,"about_ca_system_score_gemma":0.0012613216,"threshold_uncertainty_score":0.06278145},"labels":[],"label_agreement":null},{"id":"W2152934249","doi":"10.1128/jcm.05122-11","title":"Five-Year Outbreak of Community- and Hospital-Acquired Mycobacterium porcinum Infections Related to Public Water Supplies","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Outbreak; Pulsed-field gel electrophoresis; rpoB; Biology; Sputum; Microbiology; Veterinary medicine; Mycobacterium; Genotype; Virology; Medicine; Tuberculosis; Bacteria; Pathology; 16S ribosomal RNA; Genetics","score_opus":0.05378701527932349,"score_gpt":0.3475818726404316,"score_spread":0.2937948573611081,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152934249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99969816,0.000042666958,0.000060486083,0.000031757354,0.000003105128,0.000006524459,0.000020010288,0.0000051258025,0.00013232169],"genre_scores_gemma":[0.9997825,0.000024981426,0.000043418313,0.00003844724,0.000008799095,0.00000250335,0.00005179111,7.3814994e-7,0.000046798297],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995511,0.000107434025,0.000039545128,0.000081816266,0.00007021929,0.0001499122],"domain_scores_gemma":[0.99923515,0.00016515735,0.00024704266,0.00004286641,0.00010172983,0.0002080754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003671019,0.00041011735,0.0002604632,0.000528429,0.00094233046,0.00054749026,0.00029842413,0.00060832984,0.00093200884],"category_scores_gemma":[0.0015062146,0.00029230883,0.00018869397,0.00049372733,0.0004419688,0.0004278939,0.000614614,0.0005291634,0.00013174266],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002186686,0.00021053797,0.98263323,0.000024218274,0.00004367237,0.010493041,0.00063254643,0.00018695995,0.0020976425,0.00003506798,0.00025473075,0.0031696046],"study_design_scores_gemma":[0.000037119462,0.0007930192,0.97758543,0.000019770367,0.00004549724,0.017063811,0.0017877715,0.0010040799,0.0008445958,0.000045872097,0.0007547356,0.000018278779],"about_ca_topic_score_codex":0.005387362,"about_ca_topic_score_gemma":0.0042053536,"teacher_disagreement_score":0.005387362,"about_ca_system_score_codex":0.00076237204,"about_ca_system_score_gemma":0.0003837561,"threshold_uncertainty_score":0.010712028},"labels":[],"label_agreement":null},{"id":"W2153380173","doi":"10.1128/jcm.40.7.2566-2571.2002","title":"Sensitive Detection of HBsAg Mutants by a Gap Ligase Chain Reaction Assay","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Ligase chain reaction; Mutant; Hepatitis B virus; HBsAg; Molecular biology; DNA; Virology; Mutation; Biology; Hepadnaviridae; Polymerase chain reaction; Virus; DNA ligase; Genetics; Gene; Multiplex polymerase chain reaction","score_opus":0.06999233041525112,"score_gpt":0.3641475871028619,"score_spread":0.2941552566876108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153380173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.555226,0.0045028534,0.43171522,0.0002077881,0.0001627315,0.00088597805,0.00076380384,0.0020735904,0.004461991],"genre_scores_gemma":[0.5978675,0.0022362245,0.39213687,0.00023382621,0.00008346702,0.00090569723,0.001171895,0.00013517783,0.0052293804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954111,0.0020658907,0.0003120984,0.0007642201,0.001196942,0.0002497556],"domain_scores_gemma":[0.99770314,0.001138276,0.00035647245,0.00024309737,0.00041592965,0.00014314734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026233178,0.0011812577,0.0009047045,0.002009009,0.00017971364,0.00067262264,0.00059715204,0.0008860645,0.0015551021],"category_scores_gemma":[0.003094975,0.00058038125,0.00036144292,0.00066587934,0.00073057786,0.0006286995,0.00080613774,0.0009298207,0.0012143257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022613734,0.000093109586,0.0020777353,0.0001847537,0.000019784173,0.000094281735,0.0001211321,0.00012387193,0.98610723,0.00021677035,0.00011636746,0.010618826],"study_design_scores_gemma":[0.000040832216,0.001055605,0.0053402074,0.000029464803,0.000047076315,0.0010703703,0.00005232845,0.005389652,0.98386186,0.00015157963,0.0029326696,0.000028402255],"about_ca_topic_score_codex":0.0001696783,"about_ca_topic_score_gemma":0.00031527574,"teacher_disagreement_score":0.0026233178,"about_ca_system_score_codex":0.00029709414,"about_ca_system_score_gemma":0.00023223512,"threshold_uncertainty_score":0.013873577},"labels":[],"label_agreement":null},{"id":"W2153926968","doi":"10.1128/jcm.38.4.1592-1598.2000","title":"Comparison of Polyvinyl Alcohol Fixative with Three Less Hazardous Fixatives for Detection and Identification of Intestinal Parasites","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fecal contamination and water quality","field":"Environmental Science","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Fixative; Acridine orange; Polyvinyl alcohol; Microbiology; Chemistry; Biology; Chromatography; Medicine; Pathology; Staining","score_opus":0.08878383683533812,"score_gpt":0.40620999765603744,"score_spread":0.3174261608206993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153926968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9841085,0.00517335,0.008840738,0.00008062802,0.0001065968,0.00011654766,0.00009856702,0.000064943066,0.0014101737],"genre_scores_gemma":[0.95787185,0.0044928617,0.035285715,0.000101145844,0.000068949754,0.00017200943,0.0005660086,0.00007014318,0.0013713114],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99793077,0.00077412406,0.00033631208,0.00029363332,0.00047106436,0.00019406495],"domain_scores_gemma":[0.9970272,0.0014553126,0.0005024104,0.0002230675,0.00056142255,0.00023050842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024476198,0.0009643734,0.0003879483,0.0028480212,0.0004076421,0.0006312934,0.0006693259,0.0009369427,0.0009619096],"category_scores_gemma":[0.0033639243,0.00054216327,0.00057081523,0.00093758566,0.00061961124,0.0010775785,0.00068390206,0.00045467724,0.0002980167],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032194627,0.0004141875,0.034560896,0.00090599,0.00029567533,0.00039462786,0.000488424,0.00051803415,0.92958754,0.00021894516,0.00013257703,0.02926366],"study_design_scores_gemma":[0.0002399335,0.024236014,0.19836934,0.0002748229,0.001661604,0.003857186,0.00097351166,0.005663193,0.7564987,0.00044534748,0.007597245,0.00018317474],"about_ca_topic_score_codex":0.0013519459,"about_ca_topic_score_gemma":0.0025755554,"teacher_disagreement_score":0.0028480212,"about_ca_system_score_codex":0.00034374505,"about_ca_system_score_gemma":0.00038751878,"threshold_uncertainty_score":0.0129444},"labels":[],"label_agreement":null},{"id":"W2153983867","doi":"10.1128/jcm.00658-08","title":"Identities of <i>Arthrobacter</i> spp. and <i>Arthrobacter</i> -Like Bacteria Encountered in Human Clinical Specimens","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"Universität Ulm; Göteborgs Universitet","keywords":"Arthrobacter; Microbacterium; Biology; 16S ribosomal RNA; Microbiology; Bacteria; Brevibacterium; Microorganism; Genetics","score_opus":0.08607507032375783,"score_gpt":0.40479786139124097,"score_spread":0.31872279106748314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153983867","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974141,0.0012157462,0.0003758818,0.000023352703,0.000008481632,0.000026387032,0.00029940417,0.000008187811,0.00062852824],"genre_scores_gemma":[0.99704045,0.0009309577,0.0011858192,0.000039695544,0.000019450401,0.000022439812,0.0005667779,0.000005837675,0.0001885637],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99913365,0.00012936136,0.00021130848,0.00022384575,0.00017879998,0.00012310172],"domain_scores_gemma":[0.9989729,0.00023876647,0.00040306084,0.00009071165,0.00016223404,0.00013238203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003613497,0.0003795743,0.00037624565,0.0017671561,0.00031832865,0.0006586315,0.0002506638,0.00042983124,0.00072320364],"category_scores_gemma":[0.0015411583,0.00024264846,0.00023813541,0.0009285884,0.00047941034,0.00031733175,0.0005170287,0.00021736156,0.00050193875],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010038271,0.00015547228,0.64075726,0.00041726427,0.00008453237,0.0037744043,0.0016713364,0.000110221656,0.33154657,0.00010471475,0.00022188209,0.020152505],"study_design_scores_gemma":[0.00001718941,0.0010316139,0.91414475,0.00007701592,0.00014335394,0.02194399,0.0020764524,0.00023533966,0.057796907,0.00009887673,0.0024062106,0.000028388751],"about_ca_topic_score_codex":0.0008745743,"about_ca_topic_score_gemma":0.00078575127,"teacher_disagreement_score":0.0017671561,"about_ca_system_score_codex":0.00010593729,"about_ca_system_score_gemma":0.00022449598,"threshold_uncertainty_score":0.0024194121},"labels":[],"label_agreement":null},{"id":"W2154268169","doi":"10.1128/jcm.01622-10","title":"Evaluation of CLSI Agar Dilution Method and Trek Sensititre Broth Microdilution Panel for Determining Antimicrobial Susceptibility of Streptococcus pneumoniae","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto","funders":"","keywords":"Broth microdilution; Agar dilution; Streptococcus pneumoniae; Microbiology; Penicillin; Antimicrobial; Agar; Meropenem; Agar Dilution Method; Medicine; Biology; Antibiotics; Minimum inhibitory concentration; Bacteria; Antibiotic resistance","score_opus":0.0924260553256284,"score_gpt":0.41574410495811814,"score_spread":0.3233180496324897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154268169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7847229,0.012861306,0.17457652,0.0011138698,0.0011169078,0.0027386383,0.0046403143,0.0022428632,0.015986612],"genre_scores_gemma":[0.71969557,0.003666759,0.26149663,0.0005305768,0.00025374044,0.0020857924,0.0055385106,0.0002580538,0.0064742635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9717795,0.009501748,0.002966998,0.0026524868,0.012525017,0.00057417306],"domain_scores_gemma":[0.9822306,0.0047690603,0.0024129108,0.0016440725,0.008399011,0.00054431765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010642565,0.0013684449,0.001693833,0.003127235,0.00041166792,0.0009657132,0.0018959759,0.0014949818,0.0021741882],"category_scores_gemma":[0.018001894,0.00062507973,0.000875801,0.0019453828,0.00067051535,0.0008709863,0.00072021596,0.001024304,0.0017318644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032998794,0.0012186476,0.022237903,0.0008249757,0.00021024344,0.0004237357,0.000877915,0.00093680574,0.9099121,0.0005374,0.0014311082,0.058089253],"study_design_scores_gemma":[0.0003259588,0.0143763395,0.10324408,0.00019404246,0.0004734384,0.0056833723,0.000431226,0.011289097,0.8529939,0.00028873474,0.0103834625,0.000316278],"about_ca_topic_score_codex":0.00096304447,"about_ca_topic_score_gemma":0.0020701587,"teacher_disagreement_score":0.010642565,"about_ca_system_score_codex":0.00053100864,"about_ca_system_score_gemma":0.00094210333,"threshold_uncertainty_score":0.05628389},"labels":[],"label_agreement":null},{"id":"W2154457716","doi":"10.1128/jcm.39.7.2508-2512.2001","title":"Evaluation of a Modified Sanitary Napkin as a Sample Self-Collection Device for the Detection of Genital Chlamydial Infection in Women","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital du Saint-Sacrement","funders":"","keywords":"Chlamydia trachomatis; Urine; Confidence interval; Medicine; Gynecology; Urine sample; Chlamydia; Genitourinary system; Sex organ; Chlamydial infection; Obstetrics; Internal medicine; Biology; Immunology","score_opus":0.0994644114850102,"score_gpt":0.41836219931287844,"score_spread":0.31889778782786826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154457716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998782,0.00056875363,0.00022723031,0.00004534428,0.000015279667,0.00008206961,0.000057389134,0.000010942728,0.00021105369],"genre_scores_gemma":[0.9978364,0.00023162471,0.0014817684,0.0000638606,0.000011810848,0.000055839177,0.00011462243,0.0000032724809,0.000200751],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99689204,0.0012571362,0.000168531,0.00041496716,0.0011409215,0.00012641784],"domain_scores_gemma":[0.99647754,0.0016907335,0.0006657227,0.00018012342,0.00069981045,0.00028616269],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035992844,0.00082248193,0.0006470883,0.00054630433,0.00032673497,0.0006427275,0.0009012003,0.00069848023,0.0007043932],"category_scores_gemma":[0.008902098,0.0005154644,0.00053132855,0.0003311198,0.000438687,0.0004521443,0.00037857657,0.0003232996,0.0001679976],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020018907,0.0020584818,0.8721001,0.0007663374,0.0005836808,0.0003977458,0.0016339356,0.0006011312,0.032691665,0.000057803692,0.00036860903,0.06872155],"study_design_scores_gemma":[0.00047812608,0.03714089,0.94997865,0.00008183681,0.00045738596,0.0009608346,0.00056910445,0.003977704,0.0051687993,0.000018785255,0.0011115142,0.000056388482],"about_ca_topic_score_codex":0.0131688025,"about_ca_topic_score_gemma":0.022816513,"teacher_disagreement_score":0.0131688025,"about_ca_system_score_codex":0.001151223,"about_ca_system_score_gemma":0.00083321164,"threshold_uncertainty_score":0.02618432},"labels":[],"label_agreement":null},{"id":"W2154620371","doi":"10.1128/jcm.02736-12","title":"Phenotypic Identification of Staphylococcus intermedius May Be Inaccurate","year":2013,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Staphylococcus intermedius; Identification (biology); Biology; Phenotype; Streptococcus intermedius; Staphylococcus; Micrococcaceae; Microbiology; Staphylococcus aureus; Genetics; Bacteria; Streptococcus; Ecology; Gene","score_opus":0.05742492424985898,"score_gpt":0.3772344076581365,"score_spread":0.31980948340827753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154620371","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.044852793,0.028055348,0.008495943,0.8444992,0.0398555,0.00007493764,0.00035939878,0.000424709,0.033382174],"genre_scores_gemma":[0.37310192,0.02288544,0.008969371,0.530174,0.05496995,0.000054132714,0.00020566664,0.00023173327,0.009407811],"study_design_codex":"case_report","study_design_gemma":"not_applicable","domain_scores_codex":[0.99680495,0.0013339148,0.00054619747,0.00032805602,0.00073578674,0.00025104854],"domain_scores_gemma":[0.9903916,0.005639301,0.0014950058,0.00049850496,0.0015509549,0.00042448958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002136515,0.0008751075,0.0010002999,0.0012667158,0.0008896035,0.002280492,0.0012464249,0.006528274,0.002277167],"category_scores_gemma":[0.023759734,0.00058236776,0.0005822301,0.00077148504,0.002152653,0.0038291807,0.000852455,0.009031215,0.0059086345],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035258455,0.00016723131,0.031848453,0.0008576912,0.00008152656,0.43533656,0.002260888,0.00038655484,0.0069738324,0.0076547423,0.4287435,0.08533642],"study_design_scores_gemma":[0.000060181963,0.00022453396,0.009303959,0.0023158016,0.00012459046,0.65461004,0.005600871,0.0021731418,0.006167095,0.019662932,0.2996039,0.00015304062],"about_ca_topic_score_codex":0.0011552728,"about_ca_topic_score_gemma":0.0013373476,"teacher_disagreement_score":0.006528274,"about_ca_system_score_codex":0.001056321,"about_ca_system_score_gemma":0.00041757425,"threshold_uncertainty_score":0.011299074},"labels":[],"label_agreement":null},{"id":"W2154850739","doi":"10.1128/jcm.02417-09","title":"Novel Duplex Real-Time PCR Assay Detects <i>Bordetella holmesii</i> in Specimens from Patients with Pertussis-Like Symptoms in Ontario, Canada","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary; University of Toronto","funders":"","keywords":"Bordetella pertussis; Medicine; Whooping cough; Pathogen; Microbiology; Bordetella; Polymerase chain reaction; Virology; Biology; Immunology; Bacteria; Genetics; Gene","score_opus":0.012056614561444818,"score_gpt":0.24633962131280465,"score_spread":0.23428300675135982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154850739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879935,0.0011011633,0.0045615644,0.00024130182,0.0000505008,0.00025984173,0.001415374,0.00020353726,0.004173208],"genre_scores_gemma":[0.9876928,0.0006156946,0.0072333394,0.00022924693,0.000014754596,0.00009035657,0.0011647273,0.000018364177,0.0029406708],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999253,0.000053988013,0.00005196013,0.00016492137,0.00035110489,0.00012514125],"domain_scores_gemma":[0.99948835,0.000077687444,0.00008218335,0.000014737587,0.00026763382,0.00006938441],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038945253,0.00034727526,0.000333771,0.0005270359,0.0007935537,0.00066363637,0.0005299276,0.0003673955,0.00095036183],"category_scores_gemma":[0.000694326,0.00027675965,0.00018341029,0.00053214456,0.0006913254,0.00018637606,0.00020947844,0.00048005785,0.0002465171],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014673417,0.0002630125,0.40037212,0.00037741617,0.000057605674,0.00132521,0.00459391,0.00040510466,0.5518703,0.00022371406,0.002538258,0.036505967],"study_design_scores_gemma":[0.00010864126,0.0010158843,0.8850172,0.000086706365,0.00012146145,0.002453839,0.0045792926,0.0028376982,0.091314085,0.0000547418,0.012355016,0.000055347682],"about_ca_topic_score_codex":0.7228718,"about_ca_topic_score_gemma":0.82376516,"teacher_disagreement_score":0.27712822,"about_ca_system_score_codex":0.005145203,"about_ca_system_score_gemma":0.00474795,"threshold_uncertainty_score":0.5575205},"labels":[],"label_agreement":null},{"id":"W2154900038","doi":"10.1128/jcm.40.9.3455-3462.2002","title":"Characterization of Hepatitis C Virus Quasispecies by Matrix-Assisted Laser Desorption Ionization-Time of Flight (Mass Spectrometry) Mutation Detection","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Medical Research Council","keywords":"Viral quasispecies; Virology; Biology; Hypervariable region; Hepatitis C virus; Virus; Population; Genetics; Medicine; Antibody","score_opus":0.03555030209090152,"score_gpt":0.34130177814521123,"score_spread":0.3057514760543097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154900038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93023777,0.005513938,0.059846893,0.00023640906,0.00011190714,0.0002502642,0.0013796585,0.00036677715,0.002056438],"genre_scores_gemma":[0.8402763,0.0039495258,0.15193197,0.00039886404,0.000079188925,0.00030554444,0.0011947864,0.000052610525,0.0018111726],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995753,0.00008256429,0.00003706765,0.0001068003,0.00016736588,0.000030791296],"domain_scores_gemma":[0.99941087,0.00023332346,0.00012704464,0.000030256662,0.00013807014,0.00006053673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061087636,0.00047810443,0.0003882276,0.0010326648,0.0004049516,0.00048581944,0.00029342907,0.0006054072,0.0006151279],"category_scores_gemma":[0.0011358076,0.00018508045,0.00019396591,0.0004128475,0.00030192785,0.00039650337,0.00024103804,0.000482195,0.0006095959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007918583,0.000042107247,0.0028539828,0.000058325193,0.000009294913,0.00006462688,0.000034561017,0.000048181726,0.9905909,0.000079875725,0.000041610372,0.006097337],"study_design_scores_gemma":[0.000027842461,0.0005807919,0.031942602,0.00001571189,0.000039475963,0.0022206237,0.00007588197,0.0043633613,0.9583988,0.00025797324,0.0020351429,0.00004169894],"about_ca_topic_score_codex":0.00035726343,"about_ca_topic_score_gemma":0.0005942075,"teacher_disagreement_score":0.0010326648,"about_ca_system_score_codex":0.00019269802,"about_ca_system_score_gemma":0.00024320524,"threshold_uncertainty_score":0.0032306314},"labels":[],"label_agreement":null},{"id":"W2154904981","doi":"10.1128/jcm.01547-09","title":"Comparison of PCR and Culture for Screening of Vancomycin-Resistant Enterococci: Highly Disparate Results for <i>vanA</i> and <i>vanB</i>","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University Health Centre","funders":"","keywords":"Vancomycin-Resistant Enterococci; Predictive value; Vancomycin; Microbiology; Biology; Enterococcus; Polymerase chain reaction; Virology; Antibiotics; Medicine; Bacteria; Genetics; Internal medicine; Staphylococcus aureus; Gene","score_opus":0.0683894458800199,"score_gpt":0.4233022688025012,"score_spread":0.35491282292248133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154904981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950106,0.0012979072,0.0029040335,0.00006698403,0.000039581424,0.000030012361,0.000102655235,0.000021348014,0.00052683125],"genre_scores_gemma":[0.9967848,0.00036058563,0.002483968,0.000045197456,0.000019698437,0.000014371004,0.00017019904,0.000006528535,0.00011455012],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964122,0.0015352515,0.00029442212,0.00051513646,0.001011191,0.00023175537],"domain_scores_gemma":[0.98508275,0.0113223195,0.0014804272,0.00041209644,0.0012714914,0.00043082374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039967955,0.00043910308,0.00038052883,0.001356443,0.00012280051,0.00063762075,0.0003232383,0.00069880055,0.0003650899],"category_scores_gemma":[0.022456927,0.00034500626,0.00025681098,0.00065520563,0.0005176754,0.00060018164,0.0002869903,0.000482913,0.00026758562],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022524905,0.00034569445,0.89581245,0.00023527395,0.00017886581,0.00050578575,0.0006923681,0.0014257448,0.04547365,0.00011594663,0.00020474472,0.05275701],"study_design_scores_gemma":[0.00010178117,0.0060483506,0.9261054,0.00008619795,0.00019061797,0.0042777467,0.00085719407,0.011556196,0.04949323,0.00024422788,0.0009895489,0.000049601957],"about_ca_topic_score_codex":0.0013291517,"about_ca_topic_score_gemma":0.0016225198,"teacher_disagreement_score":0.0039967955,"about_ca_system_score_codex":0.00027037266,"about_ca_system_score_gemma":0.0002540423,"threshold_uncertainty_score":0.021137297},"labels":[],"label_agreement":null},{"id":"W2154994139","doi":"10.1128/jcm.44.2.637-639.2006","title":"Prospective Comparison of a New Chromogenic Medium, MRSA <i>Select</i> , to CHROMagar MRSA and Mannitol-Salt Medium Supplemented with Oxacillin or Cefoxitin for Detection of Methicillin-Resistant <i>Staphylococcus aureus</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; London Health Sciences Centre","funders":"","keywords":"Cefoxitin; Microbiology; Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Agar; Mannitol; Chromogenic; Micrococcaceae; Meticillin; Medicine; Antibacterial agent; Chemistry; Biology; Antibiotics; Bacteria; Chromatography","score_opus":0.03496178317011576,"score_gpt":0.3636169721925275,"score_spread":0.3286551890224117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154994139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971986,0.001020724,0.0009412646,0.000019740886,0.000027623833,0.00006516228,0.00019904492,0.0000231972,0.0005047369],"genre_scores_gemma":[0.99730766,0.0002957233,0.0015518151,0.0000436908,0.000024522205,0.000044555327,0.00040443338,0.000012365702,0.00031512746],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975846,0.00083176524,0.00016460913,0.00065147557,0.0006407967,0.00012680826],"domain_scores_gemma":[0.99195486,0.0043793,0.0012972238,0.00052446435,0.0010617037,0.00078247715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028963583,0.00092833623,0.00058421015,0.0011327227,0.00044565598,0.00065057556,0.00039912236,0.0008875871,0.0012341246],"category_scores_gemma":[0.007623691,0.000548092,0.00042384616,0.0008955051,0.00074832496,0.00055936427,0.0004204634,0.0006730892,0.00050221104],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.039850663,0.0032917694,0.8774906,0.0004338682,0.00043658394,0.0005382765,0.00049108296,0.00037384126,0.05275427,0.0001658224,0.00040232047,0.02377097],"study_design_scores_gemma":[0.0011052758,0.0960871,0.852041,0.000048399615,0.0005430116,0.0043094438,0.0002682133,0.0019356089,0.041165665,0.00008347787,0.0023427708,0.00007000053],"about_ca_topic_score_codex":0.0013507297,"about_ca_topic_score_gemma":0.0014773415,"teacher_disagreement_score":0.0028963583,"about_ca_system_score_codex":0.00040757956,"about_ca_system_score_gemma":0.0003902555,"threshold_uncertainty_score":0.015317559},"labels":[],"label_agreement":null},{"id":"W2155178820","doi":"10.1128/jcm.02477-05","title":"Detection of rtN236T and rtA181V/T Mutations Associated with Resistance to Adefovir Dipivoxil in Samples from Patients with Chronic Hepatitis B Virus Infection by the INNO-LiPA HBV DR Line Probe Assay (Version 2)","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Toronto Western Hospital; Hôpital Saint-Luc; University of Toronto; Public Health Agency of Canada","funders":"","keywords":"Adefovir; Virology; Hepatitis B virus; Lamivudine; Polymerase chain reaction; Resistance mutation; Mutation; Virus; Biology; Drug resistance; Hepatitis B; Molecular biology; Gene; Reverse transcriptase; Genetics","score_opus":0.017409921971939933,"score_gpt":0.29400066316913104,"score_spread":0.2765907411971911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155178820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981528,0.00044958736,0.0004699046,0.000027059896,0.000005655259,0.000035518173,0.00032778515,0.000020882546,0.00051064877],"genre_scores_gemma":[0.99731857,0.00016821283,0.0015099065,0.000059675058,0.000009392391,0.00004032229,0.0005278466,0.000011026098,0.00035494668],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99948776,0.000097410324,0.0000696368,0.00013622423,0.00013979372,0.00006919684],"domain_scores_gemma":[0.9995222,0.00014419715,0.0001431143,0.000032105767,0.000072818926,0.00008561791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040464636,0.0004237674,0.0004967542,0.0012172539,0.00032833315,0.0005144753,0.0002039393,0.0005057949,0.0010408543],"category_scores_gemma":[0.00098298,0.0002845782,0.00024511883,0.0006242986,0.0002939112,0.00022348625,0.00022427368,0.00040529354,0.00039428176],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020070383,0.00025707687,0.6909119,0.00011762829,0.000060827202,0.0052459463,0.0011318133,0.00020436103,0.28092927,0.00006805142,0.0003767673,0.018689334],"study_design_scores_gemma":[0.00012646677,0.0026223725,0.8650299,0.000029534793,0.00011023624,0.03192891,0.00054085604,0.0020922264,0.09506412,0.00005995875,0.0023627246,0.00003275626],"about_ca_topic_score_codex":0.0013386211,"about_ca_topic_score_gemma":0.0012233013,"teacher_disagreement_score":0.0013386211,"about_ca_system_score_codex":0.00025899202,"about_ca_system_score_gemma":0.00015545673,"threshold_uncertainty_score":0.0034819841},"labels":[],"label_agreement":null},{"id":"W2155226848","doi":"10.1128/jcm.40.7.2671-2674.2002","title":"PCR for Detection of <i>cdt-III</i> and the Relative Frequencies of Cytolethal Distending Toxin Variant-Producing <i>Escherichia coli</i> Isolates from Humans and Cattle","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Cytolethal distending toxin; Biology; Escherichia coli; Gene; Toxin; Genotype; Polymerase chain reaction; Microbiology; Molecular biology; Genetics","score_opus":0.03657582443002618,"score_gpt":0.3107803019949681,"score_spread":0.27420447756494193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155226848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9782427,0.00045397438,0.018552821,0.00007599606,0.00003093453,0.00012331425,0.0010729971,0.000085158805,0.0013622283],"genre_scores_gemma":[0.9520111,0.0007636084,0.040857203,0.0001680589,0.00003114151,0.00016836564,0.004370855,0.00004648012,0.0015832703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99964106,0.000047849164,0.00004197596,0.00012827285,0.000073595875,0.000067259636],"domain_scores_gemma":[0.9995295,0.0001443095,0.00012226381,0.000028958315,0.000118217824,0.000056810637],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023983911,0.0003966236,0.00032230865,0.00058843906,0.00012920113,0.0003817178,0.00017539317,0.000394922,0.0007291787],"category_scores_gemma":[0.0007010694,0.00019371492,0.00034928537,0.00036755993,0.00026338894,0.00009198766,0.000101790065,0.00034031805,0.0004098813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014855676,0.000026312557,0.01188189,0.000067526154,0.000013933759,0.00013605994,0.00009511532,0.000059210714,0.9849053,0.000051693085,0.000047643978,0.0025667036],"study_design_scores_gemma":[0.00004666577,0.0013789575,0.17485017,0.00008404029,0.00019245216,0.005383865,0.00053819804,0.0024101243,0.80946046,0.0001691855,0.005457795,0.000028152283],"about_ca_topic_score_codex":0.0010969469,"about_ca_topic_score_gemma":0.0010654158,"teacher_disagreement_score":0.0010969469,"about_ca_system_score_codex":0.0002229127,"about_ca_system_score_gemma":0.00015429097,"threshold_uncertainty_score":0.00243932},"labels":[],"label_agreement":null},{"id":"W2155380238","doi":"10.1128/jcm.43.9.4628-4634.2005","title":"Prevalence of Toxic Shock Syndrome Toxin 1-Producing <i>Staphylococcus aureus</i> and the Presence of Antibodies to This Superantigen in Menstruating Women","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"BD; Dartmouth College; Procter and Gamble","keywords":"Toxic shock syndrome; Staphylococcus aureus; Antibody; Antibody titer; Medicine; Titer; Superantigen; Immunology; Vagina; Staphylococcal infections; Microbiology; Biology; Immune system; Surgery","score_opus":0.02449807227639043,"score_gpt":0.33418094807828513,"score_spread":0.3096828758018947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155380238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993451,0.00023113821,0.000017779817,0.0000296055,0.0000032249925,0.0000054129328,0.00009118015,0.0000023928224,0.00027413366],"genre_scores_gemma":[0.9995265,0.00019177265,0.000047859703,0.00003628831,0.000008335548,0.000007763467,0.00006553215,9.520734e-7,0.00011501285],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99983835,0.000032753287,0.000019451112,0.000031960437,0.000033759814,0.00004372187],"domain_scores_gemma":[0.99930215,0.000115776325,0.0003562107,0.000023640892,0.00004878697,0.00015334945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001868442,0.00017737014,0.00023125693,0.00078287494,0.00037558717,0.00032973563,0.00022900767,0.00044846928,0.0013221141],"category_scores_gemma":[0.0010880501,0.0003221827,0.00019360449,0.00067362917,0.00032936488,0.0002936297,0.00025646767,0.00029411414,0.00019563401],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003067344,0.000014909546,0.9985337,0.0000063160737,0.000008553605,0.00012261621,0.00012619853,0.000007734558,0.00037521255,0.000006807079,0.000046499048,0.00072072214],"study_design_scores_gemma":[0.0000026134987,0.00010141743,0.99881494,0.0000050785998,0.000008423084,0.00060984504,0.0002889224,0.000031897132,0.000036071393,0.000005478774,0.000093459515,0.0000017688119],"about_ca_topic_score_codex":0.005807334,"about_ca_topic_score_gemma":0.0067316336,"teacher_disagreement_score":0.005807334,"about_ca_system_score_codex":0.00018101066,"about_ca_system_score_gemma":0.00019592729,"threshold_uncertainty_score":0.011547089},"labels":[],"label_agreement":null},{"id":"W2155388000","doi":"10.1128/jcm.41.7.2900-2907.2003","title":"Sources and Magnitude of Intralaboratory Variability in a Sequence-Based Genotypic Assay for Human Immunodeficiency Virus Type 1 Drug Resistance","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver","funders":"","keywords":"Concordance; Biology; Genotyping; Genotype; Virology; Reverse transcriptase; Drug resistance; Sequence (biology); Sequence analysis; Genetics; Human immunodeficiency virus (HIV); Consensus sequence; Polymerase chain reaction; Peptide sequence; DNA; Gene","score_opus":0.046212790547774586,"score_gpt":0.36625511599083443,"score_spread":0.3200423254430598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155388000","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742176,0.0008870325,0.023528771,0.00008679896,0.000030131705,0.00007764279,0.00028522723,0.000121379475,0.0007654249],"genre_scores_gemma":[0.9882527,0.00008610317,0.010781091,0.00006600947,0.000028983777,0.00006256599,0.00047046706,0.000046985726,0.00020507946],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.97793716,0.011322333,0.001323675,0.0033172355,0.0057842573,0.00031535904],"domain_scores_gemma":[0.9731505,0.018237365,0.0026969858,0.0033485638,0.0022921895,0.00027441912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014572119,0.00050417613,0.0004142164,0.0010985218,0.00034732476,0.0011854182,0.0005244234,0.0006764486,0.00030184092],"category_scores_gemma":[0.038872253,0.00034056584,0.00027931796,0.00080142956,0.00066856435,0.00031992322,0.0005686068,0.000547299,0.00026810146],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017590108,0.00039324668,0.6688048,0.00020762069,0.00069152133,0.0002277948,0.003068075,0.00513678,0.25378582,0.00039557499,0.0003688388,0.06516088],"study_design_scores_gemma":[0.00008101302,0.0027086362,0.81863785,0.000079729965,0.0003888451,0.001704274,0.00041458575,0.02675349,0.14573091,0.0007472543,0.0026303388,0.00012316591],"about_ca_topic_score_codex":0.00080129935,"about_ca_topic_score_gemma":0.000887533,"teacher_disagreement_score":0.014572119,"about_ca_system_score_codex":0.00039570848,"about_ca_system_score_gemma":0.0002713382,"threshold_uncertainty_score":0.07706565},"labels":[],"label_agreement":null},{"id":"W2155449488","doi":"10.1128/jcm.38.9.3274-3279.2000","title":"Comprehensive PCR-Based Assay for Detection and Species Identification of Human Herpesviruses","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Biology; Virology; Herpes simplex virus; Primer (cosmetics); Varicella zoster virus; Virus; Herpesviridae; Polymerase chain reaction; Alphaherpesvirinae; Restriction enzyme; Human cytomegalovirus; Human herpesvirus 6; Genome; Molecular biology; Viral disease; Gene; Genetics; Chemistry","score_opus":0.08477985539295992,"score_gpt":0.40192687094730567,"score_spread":0.31714701555434577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155449488","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.11714398,0.009109623,0.86198074,0.00019158173,0.0002883282,0.0023517306,0.0022328892,0.0032073243,0.0034937242],"genre_scores_gemma":[0.1652162,0.0046458812,0.8161977,0.00037225135,0.00015026507,0.002854032,0.0069002854,0.00012976595,0.0035336807],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964767,0.0007462751,0.000384572,0.0010139841,0.0011394062,0.00023902474],"domain_scores_gemma":[0.99770314,0.0007215642,0.00025168387,0.00029017386,0.0007965309,0.00023693465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023660802,0.0014669913,0.0013597847,0.0023417014,0.00051806885,0.00075263274,0.001122035,0.00089547614,0.0016011838],"category_scores_gemma":[0.0031346884,0.00086224,0.00074464426,0.0008996376,0.0006316963,0.00081996183,0.00097053574,0.0015264367,0.0019011298],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011121309,0.00011669803,0.0015318732,0.00022620131,0.00003440913,0.00007378141,0.000064451015,0.00037266948,0.9767556,0.00031454727,0.0004095033,0.01998887],"study_design_scores_gemma":[0.00008598449,0.0032659506,0.016112808,0.00022534135,0.00028442222,0.0034261358,0.00013532884,0.011612916,0.94349986,0.0010307787,0.02019152,0.00012904736],"about_ca_topic_score_codex":0.0003703744,"about_ca_topic_score_gemma":0.0009445403,"teacher_disagreement_score":0.0023660802,"about_ca_system_score_codex":0.00039148418,"about_ca_system_score_gemma":0.000938239,"threshold_uncertainty_score":0.012513161},"labels":[],"label_agreement":null},{"id":"W2155578547","doi":"10.1128/jcm.41.11.4986-4990.2003","title":"Study of Animal-Borne Infections in the Mucosas of Patients with Inflammatory Bowel Disease and Population-Based Controls","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture Food and Rural Development; University of Manitoba","funders":"University of Manitoba; Research Manitoba","keywords":"Inflammatory bowel disease; Medicine; Ulcerative colitis; Crohn's disease; Disease; Population; Internal medicine; Paratuberculosis; Gastroenterology; Colonoscopy; Immunology; Mycobacterium; Pathology; Tuberculosis; Cancer; Colorectal cancer","score_opus":0.02643134551752505,"score_gpt":0.35603873463312236,"score_spread":0.3296073891155973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155578547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931455,0.00012472575,0.00005318019,0.000015949356,0.000006574186,0.000012466515,0.0001061198,0.0000036192646,0.0003628423],"genre_scores_gemma":[0.9994899,0.000066224035,0.000051861152,0.000028375805,0.000014390503,0.00001583629,0.00021064367,0.0000022286397,0.000120458615],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991611,0.00020871662,0.00009714299,0.00029309222,0.00011641305,0.00012346443],"domain_scores_gemma":[0.99871707,0.0002964193,0.00038870925,0.00013204529,0.00014271415,0.00032304588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064067653,0.00058403006,0.0006589963,0.0017192242,0.0008878857,0.0008569268,0.00037376283,0.0009433145,0.0019305135],"category_scores_gemma":[0.003399676,0.0004666069,0.00038609965,0.0011278925,0.0005326145,0.00071353314,0.00058396405,0.0005439747,0.00033668982],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035297868,0.00011603719,0.9970452,0.00001223813,0.000052611576,0.00053284364,0.00018603198,0.000014257616,0.0008082005,0.000023397646,0.000051661627,0.0008045654],"study_design_scores_gemma":[0.000030480556,0.00049532804,0.9973797,0.0000034966981,0.00003572716,0.0014245185,0.00028884638,0.00005610292,0.00008421218,0.000019897903,0.00017700931,0.000004691324],"about_ca_topic_score_codex":0.0035473343,"about_ca_topic_score_gemma":0.0021808322,"teacher_disagreement_score":0.0035473343,"about_ca_system_score_codex":0.00036830708,"about_ca_system_score_gemma":0.0002338021,"threshold_uncertainty_score":0.0070533752},"labels":[],"label_agreement":null},{"id":"W2155655238","doi":"10.1128/jcm.01868-10","title":"<i>In Vitro</i> Selection of Clinically Relevant Bevirimat Resistance Mutations Revealed by “Deep” Sequencing of Serially Passaged, Quasispecies-Containing Recombinant HIV-1","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of British Columbia; AIDS Vancouver","funders":"Canadian Institutes of Health Research","keywords":"Viral quasispecies; Deep sequencing; Biology; Virology; Recombinant DNA; Reverse transcriptase; Group-specific antigen; Amplicon; Human immunodeficiency virus (HIV); Genotype; Molecular biology; Genetics; Virus; Polymerase chain reaction; Gene; Genome","score_opus":0.02296125577951261,"score_gpt":0.33395240244258856,"score_spread":0.3109911466630759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155655238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930837,0.00013835993,0.0058229268,0.000030372896,0.0000065943464,0.00003952067,0.00024074591,0.00003340203,0.00060437655],"genre_scores_gemma":[0.9904565,0.00010161989,0.008291155,0.00007481121,0.0000067671913,0.000057625446,0.0006172205,0.000017022066,0.00037739341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953496,0.00016435611,0.000035390534,0.000116088246,0.000101980884,0.000047204143],"domain_scores_gemma":[0.9996979,0.000102449754,0.000060269453,0.00005133905,0.00005449541,0.000033571534],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066033547,0.0002633877,0.00028881014,0.00011603115,0.00019931687,0.00047731056,0.00017010256,0.00020387184,0.0005463486],"category_scores_gemma":[0.00082030677,0.00015892161,0.00018823789,0.00009794368,0.00026034575,0.00013982368,0.00021366701,0.000389488,0.00017324423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109487664,0.000038535814,0.0060582063,0.000014044376,0.000013959238,0.000023327548,0.00005460579,0.00037022037,0.99101686,0.000053193373,0.000050101724,0.002197408],"study_design_scores_gemma":[0.00001467121,0.0011017957,0.03392987,0.0000052096643,0.00004617754,0.0005163929,0.0000644012,0.006685145,0.9565702,0.00007139824,0.000981045,0.000013626151],"about_ca_topic_score_codex":0.00074033916,"about_ca_topic_score_gemma":0.0012815947,"teacher_disagreement_score":0.00074033916,"about_ca_system_score_codex":0.00023630405,"about_ca_system_score_gemma":0.0001831885,"threshold_uncertainty_score":0.0034921765},"labels":[],"label_agreement":null},{"id":"W2155705049","doi":"10.1128/jcm.02249-07","title":"High-Throughput Genotyping of <i>Salmonella enterica</i> Serovar Typhi Allowing Geographical Assignment of Haplotypes and Pathotypes within an Urban District of Jakarta, Indonesia","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Max-Planck-Gesellschaft; Natural Sciences and Engineering Research Council of Canada; Wellcome Trust","keywords":"Genotyping; Salmonella typhi; Biology; Serotype; Haplotype; Salmonella enterica; Typing; Salmonella; Genotype; Pulsed-field gel electrophoresis; Molecular epidemiology; Genetics; Microbiology; Virology; Gene; Bacteria","score_opus":0.047970438810142416,"score_gpt":0.28431934731151437,"score_spread":0.23634890850137197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155705049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99143773,0.00012721596,0.0060122665,0.00004250105,0.000008833417,0.000064091306,0.0013801862,0.00008156151,0.0008456503],"genre_scores_gemma":[0.98224777,0.00012988031,0.014989491,0.000031072646,0.0000058163696,0.00005890274,0.0017352497,0.000010727467,0.0007910516],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997061,0.000098099365,0.00002259373,0.000069326896,0.00007081571,0.000033015975],"domain_scores_gemma":[0.9997248,0.00008982771,0.000069555215,0.00003728928,0.00004314224,0.00003531077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035630984,0.0001292688,0.00019075513,0.0005113768,0.00022251986,0.0005229376,0.0001681035,0.0001573069,0.0004804589],"category_scores_gemma":[0.00058745506,0.0001342124,0.000142814,0.00046688167,0.00012556431,0.0001517603,0.00023461069,0.00018543444,0.00021535068],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043285242,0.00030950914,0.3956238,0.0001479789,0.00015617559,0.00032548487,0.00058759336,0.002966596,0.5356463,0.00023651936,0.0009969624,0.06257026],"study_design_scores_gemma":[0.000016032149,0.00017442554,0.9355214,0.000017069862,0.0000735823,0.0005371265,0.0002855684,0.010368751,0.050720938,0.00013421827,0.0021305222,0.000020335789],"about_ca_topic_score_codex":0.0042232852,"about_ca_topic_score_gemma":0.009396619,"teacher_disagreement_score":0.0042232852,"about_ca_system_score_codex":0.00019629585,"about_ca_system_score_gemma":0.00023773452,"threshold_uncertainty_score":0.0083974},"labels":[],"label_agreement":null},{"id":"W2155826834","doi":"10.1128/jcm.02365-10","title":"International External Quality Assurance for Laboratory Identification and Typing of Streptococcus agalactiae (Group B Streptococci)","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"European Commission","keywords":"Streptococcus agalactiae; Typing; Streptococcus; Microbiology; Quality assurance; Biology; Identification (biology); Streptococcaceae; Group B; Group A; Medicine; External quality assessment; Bacteria; Genetics; Internal medicine; Pathology; Ecology","score_opus":0.08484404726186864,"score_gpt":0.41278746310939834,"score_spread":0.32794341584752973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155826834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7125387,0.010237313,0.21528287,0.0025880844,0.0008958364,0.0073471824,0.00838715,0.0019886103,0.04073413],"genre_scores_gemma":[0.8719757,0.00092808076,0.103525765,0.0011019483,0.00015692822,0.002219795,0.0145482905,0.00027512567,0.0052682906],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.93212026,0.034788407,0.007969364,0.0061812475,0.01624817,0.0026926005],"domain_scores_gemma":[0.86628246,0.01645777,0.02310745,0.030832358,0.05872554,0.0045944112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.08127935,0.001392559,0.0005650381,0.0038426204,0.0014185072,0.0026471424,0.0019207224,0.00087559293,0.0016939209],"category_scores_gemma":[0.03529468,0.0004340167,0.0007306997,0.0030951737,0.0019350952,0.0010088879,0.0034760414,0.0008837749,0.000855486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010789584,0.0007703181,0.6851192,0.00073446386,0.00025169918,0.000117695454,0.0023017537,0.0012723529,0.031555872,0.0015440863,0.0047228853,0.27053073],"study_design_scores_gemma":[0.00015491043,0.0031909065,0.8877589,0.0003278916,0.00017651856,0.0006580329,0.0013382015,0.0028058,0.04000747,0.00047921535,0.06302942,0.00007279377],"about_ca_topic_score_codex":0.0073212776,"about_ca_topic_score_gemma":0.004663668,"teacher_disagreement_score":0.08127935,"about_ca_system_score_codex":0.0020563449,"about_ca_system_score_gemma":0.004377527,"threshold_uncertainty_score":0.4298514},"labels":[],"label_agreement":null},{"id":"W2155949532","doi":"10.1128/jcm.03579-13","title":"Vancomycin-Variable Enterococcus faecium: <i>In Vivo</i> Emergence of Vancomycin Resistance in a Vancomycin-Susceptible Isolate","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Mount Sinai Hospital; Public Health Ontario; University of Toronto","funders":"","keywords":"Vancomycin; Enterococcus faecium; Microbiology; Enterococcus; Biology; In vivo; Gram-positive bacterial infections; Antibacterial agent; Antibiotics; Bacteria; Staphylococcus aureus; Genetics","score_opus":0.023749701769412483,"score_gpt":0.33988136003110114,"score_spread":0.31613165826168865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155949532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948053,0.00021446618,0.0010940357,0.00045105699,0.00006500986,0.000038897986,0.000114168906,0.000034052715,0.0031830543],"genre_scores_gemma":[0.99875164,0.00007867548,0.00054313085,0.00014651644,0.000051524312,0.000004534288,0.00007823382,0.000013105191,0.00033258332],"study_design_codex":"case_report","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953234,0.00007609959,0.000059888112,0.00014278121,0.00006735688,0.00012151498],"domain_scores_gemma":[0.9989396,0.0003760227,0.00021198511,0.00009404333,0.000097909135,0.0002804888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000227258,0.00075197604,0.00046145453,0.00042374618,0.00070018345,0.00092360517,0.00038807202,0.0014127499,0.0010176392],"category_scores_gemma":[0.0023937935,0.00035613295,0.0004964725,0.0002272608,0.000553555,0.00044597918,0.00048512992,0.0017275236,0.0005568619],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011880619,0.0006381001,0.10452011,0.00017286032,0.00004848356,0.7761318,0.0019258427,0.00047067538,0.103843324,0.0008928907,0.0012668014,0.0089010075],"study_design_scores_gemma":[0.00007360121,0.002633826,0.04913908,0.000057765956,0.00008482571,0.88249904,0.00091828883,0.0014454628,0.05941372,0.00027094933,0.0033998536,0.00006368682],"about_ca_topic_score_codex":0.00094917597,"about_ca_topic_score_gemma":0.00077105546,"teacher_disagreement_score":0.0014127499,"about_ca_system_score_codex":0.0003315137,"about_ca_system_score_gemma":0.0002611913,"threshold_uncertainty_score":0.0034043193},"labels":[],"label_agreement":null},{"id":"W2155990947","doi":"10.1128/jcm.44.3.772-776.2006","title":"Effects of<i>Moraxella</i>(<i>Branhamella</i>)<i>ovis</i>Culture Filtrates on Bovine Erythrocytes, Peripheral Mononuclear Cells, and Corneal Epithelial Cells","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Microbiology; Ovis; Biology; Moraxella; Peripheral blood mononuclear cell; Polyclonal antibodies; Virology; Immunology; Antibody; Bacteria; In vitro","score_opus":0.01134556228573842,"score_gpt":0.2808185500805486,"score_spread":0.2694729877948102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155990947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983374,0.0007541362,0.00009953929,0.000036368678,0.000015160749,0.000008761492,0.000086424596,0.0000049596797,0.0006572069],"genre_scores_gemma":[0.9979784,0.0005279669,0.00038677736,0.00007104233,0.000025528281,0.000009115488,0.0004058159,0.0000028748361,0.0005925185],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99977785,0.000079724276,0.000019774625,0.000020857384,0.000037747606,0.000064026055],"domain_scores_gemma":[0.99973303,0.0001185584,0.000041984626,0.000023945035,0.000053819636,0.000028627559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021177165,0.00024213284,0.00023407758,0.00012304608,0.000155128,0.00033986964,0.0001384785,0.00018496755,0.00069193804],"category_scores_gemma":[0.00028307067,0.00007450243,0.00017912991,0.00008437994,0.00012536309,0.0001265448,0.00019066113,0.0002980579,0.00019931553],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001111965,0.00029972306,0.0034252813,0.0001338887,0.000022025506,0.00019648764,0.00017842815,0.00013708299,0.9905438,0.000063079315,0.00014142653,0.0037468348],"study_design_scores_gemma":[0.00007642962,0.009599418,0.09110795,0.00006766686,0.00006624172,0.0008970668,0.0005475506,0.0010474168,0.89403284,0.00004935034,0.0024923678,0.000015625497],"about_ca_topic_score_codex":0.0015972278,"about_ca_topic_score_gemma":0.0020351335,"teacher_disagreement_score":0.0015972278,"about_ca_system_score_codex":0.00018215597,"about_ca_system_score_gemma":0.00013029668,"threshold_uncertainty_score":0.0031758547},"labels":[],"label_agreement":null},{"id":"W2156061895","doi":"10.1128/jcm.41.3.1004-1009.2003","title":"Invasive <i>Streptococcus iniae</i> Infections Outside North America","year":2003,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Hong Kong","keywords":"Streptococcus iniae; Biology; Microbiology; Streptococcus; Streptococcaceae; Virology; Immunology; Bacteria; Antibiotics; Immune system","score_opus":0.1189691287759074,"score_gpt":0.4515516998803365,"score_spread":0.3325825711044291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156061895","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98985004,0.0009474118,0.00041217948,0.0002736636,0.000021363501,0.000028420809,0.00007884925,0.000031212756,0.0083568515],"genre_scores_gemma":[0.9981353,0.00058493717,0.00019535232,0.00025546408,0.000031172276,0.000006459159,0.00006828087,0.00000658609,0.00071626424],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99975365,0.000028264792,0.000024634543,0.00004237803,0.000037502414,0.00011343177],"domain_scores_gemma":[0.9994677,0.000058534966,0.00020266845,0.000026798853,0.000082611004,0.0001617206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012556337,0.00070543954,0.00035087767,0.0005008947,0.001000513,0.0005996628,0.00022077489,0.00044714042,0.001992686],"category_scores_gemma":[0.0005077285,0.00018715425,0.0002546,0.00068093644,0.0005667649,0.00026073924,0.0004777853,0.00045335336,0.00032765238],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020630733,0.00012289344,0.8435429,0.00021084957,0.00006542744,0.11213838,0.0040977118,0.00013263058,0.01903061,0.00048624264,0.0019335015,0.018032474],"study_design_scores_gemma":[0.000021826085,0.00031369,0.7177996,0.00016455384,0.00010009588,0.26398733,0.004921707,0.0003385383,0.0033318866,0.00025230108,0.008724642,0.000043841308],"about_ca_topic_score_codex":0.0514703,"about_ca_topic_score_gemma":0.042200856,"teacher_disagreement_score":0.0514703,"about_ca_system_score_codex":0.00071809103,"about_ca_system_score_gemma":0.0010360606,"threshold_uncertainty_score":0.10234141},"labels":[],"label_agreement":null},{"id":"W2156080436","doi":"10.1128/jcm.41.9.4318-4323.2003","title":"Antimicrobial Susceptibility Testing of Aquatic Bacteria: Quality Control Disk Diffusion Ranges for <i>Escherichia coli</i> ATCC 25922 and <i>Aeromonas salmonicida</i> subsp. <i>salmonicida</i> ATCC 33658 at 22 and 28°C","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Oak Ridge Associated Universities","keywords":"Enrofloxacin; Florfenicol; Microbiology; Oxolinic acid; Biology; Aeromonas salmonicida; Gentamicin; Antimicrobial; Ampicillin; Trimethoprim; Antibiotics; Bacteria; Ciprofloxacin; Nalidixic acid","score_opus":0.04807068607585902,"score_gpt":0.33773536740264415,"score_spread":0.28966468132678513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156080436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87831783,0.002473601,0.09500825,0.00080502935,0.00023422965,0.004825641,0.008123224,0.001317853,0.008894392],"genre_scores_gemma":[0.66107655,0.0035000555,0.29487783,0.00065766973,0.00012489244,0.007115576,0.026002675,0.00027214625,0.0063726376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9841217,0.0061351475,0.003187342,0.001347855,0.0048095495,0.00039845557],"domain_scores_gemma":[0.98531413,0.002865161,0.0021211586,0.0016763689,0.007619589,0.00040354027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0073605594,0.0011268728,0.0010178298,0.0014939479,0.000733207,0.0011578872,0.0016143118,0.0011850186,0.0020395091],"category_scores_gemma":[0.012690297,0.00047513112,0.00073550624,0.0016398147,0.0006085499,0.0006206047,0.000768858,0.0005518589,0.0013428369],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009703712,0.00083488034,0.016637798,0.0006631738,0.000051138082,0.00013747998,0.0006856819,0.0006058628,0.95733535,0.00023547266,0.0013649827,0.020477735],"study_design_scores_gemma":[0.00017104654,0.004820076,0.04814152,0.00018374906,0.00019840366,0.00087643554,0.00040488437,0.0017587843,0.9333137,0.00014324373,0.009888004,0.000100075034],"about_ca_topic_score_codex":0.0029877536,"about_ca_topic_score_gemma":0.00489586,"teacher_disagreement_score":0.0073605594,"about_ca_system_score_codex":0.0005919464,"about_ca_system_score_gemma":0.0017585242,"threshold_uncertainty_score":0.03892684},"labels":[],"label_agreement":null},{"id":"W2156183823","doi":"10.1128/jcm.39.7.2708-2712.2001","title":"Novel Fluorescent Broth Microdilution Method for Fluconazole Susceptibility Testing of <i>Candida albicans</i>","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Alberta Hospital; University of Alberta","funders":"","keywords":"Broth microdilution; Candida albicans; Candida parapsilosis; Candida glabrata; Candida tropicalis; Fluconazole; Microbiology; Serial dilution; Biology; Corpus albicans; Minimum inhibitory concentration; Antifungal; Medicine; Antibiotics","score_opus":0.09230479870234821,"score_gpt":0.41953949801524093,"score_spread":0.32723469931289273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156183823","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7103477,0.0137239,0.26263365,0.00080421986,0.0011348935,0.0008768523,0.0016376862,0.0029190334,0.00592205],"genre_scores_gemma":[0.57205755,0.003842224,0.41728443,0.0004419653,0.00029637688,0.0007629691,0.0022737756,0.0001448006,0.0028959636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9912335,0.0026835552,0.0006856791,0.0014369304,0.0037574496,0.00020279674],"domain_scores_gemma":[0.99379736,0.002047299,0.0013626985,0.00061123125,0.001927852,0.00025353552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033352585,0.0008387459,0.0009450003,0.0012251834,0.00036706167,0.0008707714,0.0015180556,0.0012787173,0.0010579842],"category_scores_gemma":[0.0062844744,0.00045208956,0.00046051634,0.00080517813,0.0005745635,0.00060987315,0.00051360903,0.0008289752,0.0008177337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001493417,0.0006808643,0.010934407,0.00046075115,0.000086286316,0.00016010187,0.00025555457,0.00045818064,0.93725306,0.00037642123,0.0010495064,0.04679145],"study_design_scores_gemma":[0.00016550208,0.0036146927,0.03419789,0.00014807,0.00020304928,0.005317895,0.00011870456,0.012690102,0.9357694,0.00015312906,0.007439892,0.00018171994],"about_ca_topic_score_codex":0.001012918,"about_ca_topic_score_gemma":0.0022448804,"teacher_disagreement_score":0.0033352585,"about_ca_system_score_codex":0.00084591255,"about_ca_system_score_gemma":0.00062292116,"threshold_uncertainty_score":0.017638683},"labels":[],"label_agreement":null},{"id":"W2156250557","doi":"10.1128/jcm.00662-13","title":"Development of a Sensitive Loop-Mediated Isothermal Amplification Assay That Provides Specimen-to-Result Diagnosis of Respiratory Syncytial Virus Infection in 30 Minutes","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Loop-mediated isothermal amplification; Amplicon; Multiplex; Virology; Molecular biology; Biology; Multiplex polymerase chain reaction; Polymerase chain reaction; Virus; Gene; DNA","score_opus":0.1214245617249802,"score_gpt":0.4134220302802127,"score_spread":0.29199746855523245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156250557","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3749246,0.00507453,0.60994864,0.00038605672,0.00030976482,0.001624862,0.000838674,0.002716413,0.004176528],"genre_scores_gemma":[0.41851082,0.0015989323,0.5733257,0.00029479514,0.00006334756,0.00089855195,0.001360399,0.00010438163,0.0038430537],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982522,0.00041237986,0.00012956292,0.00035355735,0.000770398,0.000081814906],"domain_scores_gemma":[0.9994319,0.00019850329,0.00009460705,0.00006006787,0.00017103815,0.00004383082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015630554,0.00088207243,0.0006840309,0.00062603934,0.00018428854,0.0004981922,0.0008008315,0.0010051386,0.0008499649],"category_scores_gemma":[0.0014606745,0.0006655117,0.0005371624,0.00023182275,0.00033240902,0.0005493975,0.0005158109,0.0007543417,0.00086389756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000109865025,0.000101788355,0.0012902243,0.00011693141,0.000020903179,0.000047518435,0.000034221186,0.0005631506,0.978305,0.000174332,0.00016313767,0.01907308],"study_design_scores_gemma":[0.000040426803,0.0010476164,0.004056164,0.000025948173,0.000058372756,0.00059897243,0.00001892617,0.017259885,0.9713586,0.0001065712,0.005385287,0.000043298063],"about_ca_topic_score_codex":0.0006417356,"about_ca_topic_score_gemma":0.0010233652,"teacher_disagreement_score":0.0015630554,"about_ca_system_score_codex":0.00045545312,"about_ca_system_score_gemma":0.0007144269,"threshold_uncertainty_score":0.00826633},"labels":[],"label_agreement":null},{"id":"W2156424776","doi":"10.1128/jcm.01145-07","title":"Confirmatory Real-Time PCR Assay for Human Papillomavirus (HPV) Type 52 Infection in Anogenital Specimens Screened for HPV Infection with the Linear Array HPV Genotyping Test","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University of British Columbia; Institut National de Santé Publique du Québec; McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Hôpital Notre-Dame","funders":"National Cancer Institute; Ontario HIV Treatment Network; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Genotyping; Typing; Human papillomavirus; Papillomaviridae; Virology; HPV infection; Polymerase chain reaction; Biology; Real-time polymerase chain reaction; Molecular biology; Genotype; Medicine; Microbiology; Gene; Cervical cancer; Genetics; Internal medicine; Cancer","score_opus":0.07804322284189118,"score_gpt":0.4216767028387215,"score_spread":0.3436334799968303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156424776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98532665,0.0014731539,0.010572684,0.0001785176,0.00010050823,0.00020882869,0.00062015845,0.00020723735,0.0013121946],"genre_scores_gemma":[0.9827854,0.00058560254,0.014231249,0.00014207333,0.000059366183,0.00010622085,0.00069288607,0.000019036723,0.001378069],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993319,0.00019851163,0.00006947035,0.00013222665,0.00020396964,0.000063984924],"domain_scores_gemma":[0.9987129,0.0005682679,0.00014981448,0.00006332524,0.00040084423,0.00010492063],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088472647,0.0006217388,0.0005264786,0.00083036907,0.00021995988,0.00032172535,0.0002925305,0.00042450955,0.0018321535],"category_scores_gemma":[0.0016444739,0.0003527534,0.00030169188,0.00024538187,0.00020971507,0.00016970161,0.0001210539,0.00045882937,0.000890878],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019612126,0.00033109862,0.160838,0.00028526413,0.0000821757,0.0025497954,0.00044842693,0.00030823165,0.81064814,0.00006826392,0.0006692475,0.021810235],"study_design_scores_gemma":[0.00035213924,0.010222087,0.4438412,0.00016374307,0.00045933592,0.024193747,0.0013504826,0.008596417,0.5026014,0.00017084483,0.007933771,0.0001149391],"about_ca_topic_score_codex":0.00087851647,"about_ca_topic_score_gemma":0.001366058,"teacher_disagreement_score":0.0018321535,"about_ca_system_score_codex":0.00016506654,"about_ca_system_score_gemma":0.0001926679,"threshold_uncertainty_score":0.006129205},"labels":[],"label_agreement":null},{"id":"W2156493848","doi":"10.1128/jcm.43.1.356-362.2005","title":"Quantitative Multiplex Assay for Simultaneous Detection and Identification of Indiana and New Jersey Serotypes of Vesicular Stomatitis Virus","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"European Commission","keywords":"Vesicular stomatitis virus; Amplicon; Serotype; Vesicular Stomatitis; Primer (cosmetics); Biology; Virology; Multiplex; Vesicular stomatitis Indiana virus; Multiplex polymerase chain reaction; Rhabdoviridae; Virus; Molecular biology; Polymerase chain reaction; Gene; Genetics; Chemistry","score_opus":0.04349401508779269,"score_gpt":0.38664233300073936,"score_spread":0.34314831791294664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156493848","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3226447,0.0038743226,0.661086,0.00023166263,0.00053221866,0.0013002232,0.0026702478,0.0023768516,0.0052837213],"genre_scores_gemma":[0.262619,0.0017918425,0.7223709,0.00017956649,0.00014091498,0.0018237242,0.0032292823,0.00008641912,0.0077584265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970343,0.00084643054,0.00016913166,0.0006846084,0.0010487068,0.00021690567],"domain_scores_gemma":[0.99885166,0.000489276,0.00014959072,0.00011976516,0.00028841378,0.00010129018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026706972,0.0011044608,0.00084205356,0.0015876823,0.0003428601,0.00083744305,0.0009907349,0.0007242671,0.0014119066],"category_scores_gemma":[0.0019254552,0.00065983593,0.000414822,0.00066166336,0.00050148653,0.0006523886,0.0005492255,0.0013042035,0.00073017064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024158019,0.00014740907,0.001278254,0.00007368974,0.000024921583,0.000040379764,0.00008353535,0.0003302523,0.9850271,0.0005687095,0.00033949202,0.011844776],"study_design_scores_gemma":[0.000063439315,0.0009803892,0.004269702,0.00003606877,0.000067654044,0.0005439814,0.00005209276,0.021729749,0.96088886,0.00045054354,0.010852525,0.00006484582],"about_ca_topic_score_codex":0.00035808247,"about_ca_topic_score_gemma":0.0007745207,"teacher_disagreement_score":0.0026706972,"about_ca_system_score_codex":0.0006978562,"about_ca_system_score_gemma":0.00041886518,"threshold_uncertainty_score":0.014124155},"labels":[],"label_agreement":null},{"id":"W2156612083","doi":"10.1128/jcm.00195-13","title":"Impact of Routine Real-Time PCR Testing of Imported Malaria over 4 Years of Implementation in a Clinical Laboratory","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Alberta Health; Provincial Laboratory of Public Health","funders":"Alberta Health Services","keywords":"Malaria; Plasmodium falciparum; Public health; Medicine; Public health surveillance; Diagnosis of malaria; Blood smear; Environmental health; Pathology; Biology","score_opus":0.05020052469780795,"score_gpt":0.4457395238451154,"score_spread":0.39553899914730745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156612083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944569,0.0005679192,0.0007194003,0.0011591902,0.000074990254,0.00006618977,0.00014386894,0.00006369575,0.0027478265],"genre_scores_gemma":[0.9986884,0.00014851589,0.0006164398,0.00022337439,0.000028665117,0.000011020539,0.00009213087,0.000004659653,0.00018684554],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99189806,0.0035352642,0.0005874198,0.0009025362,0.0020652234,0.0010114338],"domain_scores_gemma":[0.9824885,0.004923602,0.005047722,0.0008589408,0.004485165,0.0021960614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008582072,0.00057221187,0.00029325316,0.0005554296,0.000533875,0.0013756282,0.0009521654,0.0005862857,0.0011958594],"category_scores_gemma":[0.032466456,0.00025512997,0.00041176114,0.00052416354,0.00080149795,0.0011014127,0.0009944257,0.00075579184,0.00018610845],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014370407,0.0016208777,0.8750083,0.00021275364,0.000131757,0.0012610834,0.0016292604,0.0034120767,0.0051115714,0.00012356172,0.0017108023,0.10834092],"study_design_scores_gemma":[0.00004932372,0.003315611,0.9869409,0.00009399993,0.00009518437,0.0008768248,0.0018227968,0.0029954321,0.0016697336,0.000058994327,0.0020468724,0.00003427],"about_ca_topic_score_codex":0.08480418,"about_ca_topic_score_gemma":0.07278674,"teacher_disagreement_score":0.08480418,"about_ca_system_score_codex":0.0028740647,"about_ca_system_score_gemma":0.0044142436,"threshold_uncertainty_score":0.16862112},"labels":[],"label_agreement":null},{"id":"W2156674905","doi":"10.1128/jcm.40.3.902-907.2002","title":"Use of PGMY Primers in L1 Consensus PCR Improves Detection of Human Papillomavirus DNA in Genital Samples","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University; Centre Hospitalier de l’Université de Montréal; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Hôpital Notre-Dame","funders":"","keywords":"Amplicon; Typing; Primer (cosmetics); Biology; Molecular biology; Virology; Polymerase chain reaction; Concordance; Papillomaviridae; Cervical cancer; Genetics; Gene; Chemistry; Cancer","score_opus":0.2227010055447431,"score_gpt":0.4288771887546701,"score_spread":0.20617618320992703,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156674905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9693104,0.0018222182,0.02704652,0.00010627602,0.000026095522,0.000057070094,0.00021593084,0.00042357176,0.0009919102],"genre_scores_gemma":[0.9400299,0.00051503535,0.05756953,0.0001497596,0.000032136322,0.00009664919,0.00057152903,0.00007759437,0.0009578528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974275,0.00082965347,0.00015231187,0.0009369163,0.00047171893,0.00018191397],"domain_scores_gemma":[0.9980736,0.0009894052,0.00040910373,0.00020390756,0.00021588404,0.00010820953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019904664,0.00052274426,0.0006314643,0.00075119396,0.00012959821,0.00053758454,0.00037517436,0.0007223705,0.0017563276],"category_scores_gemma":[0.00432321,0.00058998034,0.0002790233,0.00031172417,0.00032212495,0.0005656454,0.00063253136,0.00046139312,0.0007562386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078585,0.00006850832,0.04531076,0.00026921782,0.000041913376,0.00017751615,0.0001869363,0.00051623303,0.9026333,0.00007538604,0.00026019703,0.049674228],"study_design_scores_gemma":[0.00010831286,0.0024908183,0.24687001,0.00012613182,0.0001873807,0.0061415727,0.00022549187,0.007118101,0.7303099,0.00022351356,0.0061508305,0.000048090136],"about_ca_topic_score_codex":0.0002080207,"about_ca_topic_score_gemma":0.00047139026,"teacher_disagreement_score":0.0019904664,"about_ca_system_score_codex":0.00025451067,"about_ca_system_score_gemma":0.00016749151,"threshold_uncertainty_score":0.010526717},"labels":[],"label_agreement":null},{"id":"W2156698513","doi":"10.1128/jcm.02062-06","title":"Testing the Interaction between NOD-2 Status and Serological Response to<i>Mycobacterium paratuberculosis</i>in Cases of Inflammatory Bowel Disease","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health","keywords":"Serology; Paratuberculosis; Nod; Immunology; Population; Biology; Virology; Antibody; Medicine; Mycobacterium; Genetics; Gene","score_opus":0.07963191880110278,"score_gpt":0.4055429874616844,"score_spread":0.3259110686605816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156698513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99949455,0.00013363926,0.00006211716,0.000019585794,0.000003917756,0.000005886209,0.00005269668,0.0000030296835,0.00022452664],"genre_scores_gemma":[0.9996494,0.000041728206,0.000090114365,0.000023093984,0.000005232659,0.0000069971056,0.00008255538,0.0000016774229,0.00009918755],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99904364,0.00038979962,0.00008226697,0.00021441527,0.00015375695,0.00011609194],"domain_scores_gemma":[0.9979697,0.0006393379,0.000676076,0.0001633326,0.00019134564,0.00036021817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012245021,0.00054571574,0.0004490119,0.001039426,0.00060704723,0.00078202976,0.00062551326,0.0008300771,0.0010212911],"category_scores_gemma":[0.0042779017,0.0005583229,0.00034449255,0.00091144844,0.0006456489,0.00032923208,0.0004424837,0.0005869396,0.000260241],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018802333,0.00003799108,0.9984836,0.0000061210385,0.0000382969,0.0002194583,0.00007792744,0.0000150908545,0.0005604295,0.0000065022605,0.000023109484,0.00034344953],"study_design_scores_gemma":[0.000013794166,0.00021058189,0.99841,0.000003644679,0.000039144812,0.00079801364,0.00012133941,0.00015042735,0.00014025958,0.000009425734,0.000100573576,0.0000029278892],"about_ca_topic_score_codex":0.0072882352,"about_ca_topic_score_gemma":0.006966764,"teacher_disagreement_score":0.0072882352,"about_ca_system_score_codex":0.000396217,"about_ca_system_score_gemma":0.00022230165,"threshold_uncertainty_score":0.014491677},"labels":[],"label_agreement":null},{"id":"W2156981877","doi":"10.1128/jcm.00842-12","title":"Promise versus Reality: Optimism Bias in Package Inserts for Tuberculosis Diagnostics","year":2012,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Biosimilars and Bioanalytical Methods","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Heart Institute; University of Alberta; McGill University","funders":"European and Developing Countries Clinical Trials Partnership; Canadian Institutes of Health Research; U.S. Food and Drug Administration","keywords":"Food and drug administration; Medical physics; Package insert; Optimism; Tuberculosis; Medicine; R package; Diagnostic accuracy; Computer science; Statistics; Pathology; Psychology; Internal medicine; Risk analysis (engineering); Mathematics; Pharmacology","score_opus":0.44009669424978926,"score_gpt":0.505177077479671,"score_spread":0.06508038322988174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156981877","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":"evaluation","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":"evaluation","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002005337,0.97609067,0.0051629916,0.013506413,0.0005490124,0.000058670386,0.00015957895,0.000031657997,0.0024357275],"genre_scores_gemma":[0.1320489,0.8306501,0.01596446,0.016961822,0.0027333633,0.00029210534,0.00031410586,0.00007878555,0.0009564566],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.91877264,0.056235634,0.0069144825,0.0035527744,0.014024566,0.00049989007],"domain_scores_gemma":[0.57782525,0.38423812,0.02142786,0.0056976182,0.010285211,0.0005259334],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.12899171,0.0010313006,0.0041787224,0.0030436562,0.00035254497,0.0049280003,0.0033615383,0.0039069867,0.0036989965],"category_scores_gemma":[0.23976648,0.0008959767,0.0038099866,0.0029819643,0.0037937653,0.006012503,0.0017443042,0.00463985,0.00078481773],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012844927,0.00005783275,0.004361687,0.055488504,0.0071992003,0.00018713738,0.00069691293,0.0020346376,0.00050904014,0.02206411,0.013417734,0.8926988],"study_design_scores_gemma":[0.0021692847,0.0021597552,0.02464114,0.24315579,0.036269177,0.0045453925,0.0019690637,0.0044139586,0.007572999,0.1629405,0.5095575,0.00060546794],"about_ca_topic_score_codex":0.001246831,"about_ca_topic_score_gemma":0.0015539038,"teacher_disagreement_score":0.8710083,"about_ca_system_score_codex":0.002970133,"about_ca_system_score_gemma":0.0035914707,"threshold_uncertainty_score":0.6821815},"labels":[],"label_agreement":null},{"id":"W2157042259","doi":"10.1128/jcm.40.3.741-745.2002","title":"Identification of <i>Campylobacter</i> Heat-Stable and Heat-Labile Antigens by Combining the Penner and Lior Serotyping Schemes","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"Health Canada","keywords":"Serotype; Campylobacter; Virology; Antigen; Microbiology; Identification (biology); Biology; Bacteria; Immunology","score_opus":0.04317470330173938,"score_gpt":0.29147969963846954,"score_spread":0.24830499633673014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157042259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90384245,0.0033405828,0.068139575,0.0016835675,0.00022168152,0.0003623771,0.0011601674,0.00034177792,0.020907922],"genre_scores_gemma":[0.8957497,0.0019039904,0.09276169,0.0004739794,0.00010247219,0.000118832984,0.0017029808,0.00006495446,0.007121383],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994273,0.00015435912,0.000053711614,0.0001318097,0.00013394593,0.00009889918],"domain_scores_gemma":[0.9989901,0.00027942943,0.00022464544,0.0001445369,0.00023599107,0.00012522699],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088904804,0.00039168316,0.0003146545,0.0012636159,0.00031337168,0.00090888323,0.00048005302,0.000597273,0.002310184],"category_scores_gemma":[0.0016926861,0.00021328415,0.00033945724,0.00062539795,0.00078963494,0.00085399894,0.00062464795,0.0011615012,0.0011190798],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020833299,0.00007220727,0.022787783,0.00018685665,0.00001691644,0.00013805473,0.00026099753,0.00013719585,0.93771154,0.0009969794,0.0004786509,0.03700454],"study_design_scores_gemma":[0.00002077651,0.0013094749,0.15430224,0.00010481121,0.00009037186,0.0018498178,0.000755141,0.0014120436,0.8202958,0.0012180149,0.018571591,0.000069988775],"about_ca_topic_score_codex":0.0024213179,"about_ca_topic_score_gemma":0.004104238,"teacher_disagreement_score":0.0024213179,"about_ca_system_score_codex":0.000332268,"about_ca_system_score_gemma":0.0003554942,"threshold_uncertainty_score":0.0077283382},"labels":[],"label_agreement":null},{"id":"W2157050063","doi":"10.1128/jcm.01190-07","title":"Molecular Epidemiology of <i>Neisseria meningitidis</i> Isolates from an Outbreak of Meningococcal Disease among Men Who Have Sex with Men, Chicago, Illinois, 2003","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"European Commission; University of Oxford; Wellcome Trust","keywords":"Neisseria meningitidis; Meningococcal disease; Neisseriaceae; Outbreak; Epidemiology; Molecular epidemiology; Virology; Microbiology; Meningococcal Infections; Men who have sex with men; Biology; Medicine; Genotype; Bacteria; Antibiotics; Genetics; Syphilis; Internal medicine; Human immunodeficiency virus (HIV)","score_opus":0.02133400707507096,"score_gpt":0.3253127405649135,"score_spread":0.30397873348984256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157050063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99888283,0.00015920792,0.00007247951,0.00007039287,0.0000044691433,0.00001846204,0.00016955307,0.000005464629,0.00061706017],"genre_scores_gemma":[0.99848336,0.00015281433,0.00043936842,0.00011659877,0.00001094001,0.000010637615,0.0005199791,0.000003887619,0.00026249714],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997285,0.000032966724,0.000025513511,0.0000545292,0.000091340225,0.00006721697],"domain_scores_gemma":[0.9993955,0.00007127142,0.00021545289,0.000017642124,0.00017310228,0.00012712825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020300591,0.0002930835,0.00014141729,0.00084684807,0.0005892944,0.00054373284,0.00023243604,0.00044491232,0.0005843881],"category_scores_gemma":[0.00050758454,0.0002288335,0.00017569363,0.0005755874,0.00033315015,0.00014521781,0.00020464306,0.00043482074,0.00013969667],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050724397,0.00027517637,0.81011814,0.00013823494,0.00007892639,0.002221747,0.0028916614,0.00046515974,0.17277166,0.00011975348,0.000994048,0.009418227],"study_design_scores_gemma":[0.000024110865,0.00028562505,0.9788072,0.000056482582,0.00006492821,0.0022412564,0.0021111525,0.00043925195,0.013530873,0.00003278971,0.002388848,0.000017464828],"about_ca_topic_score_codex":0.045784015,"about_ca_topic_score_gemma":0.061885163,"teacher_disagreement_score":0.045784015,"about_ca_system_score_codex":0.0007640178,"about_ca_system_score_gemma":0.0006588117,"threshold_uncertainty_score":0},"labels":[{"model":"gpt","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"},{"model":"grok","categories":[],"domain":null,"study_design":"observational","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"},{"model":"opus","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"split"},{"id":"W2157054217","doi":"10.1128/jcm.02022-07","title":"Detection of Pathogenic <i>Leptospira</i> Bacteria in Pinniped Populations via PCR and Identification of a Source of Transmission for Zoonotic Leptospirosis in the Marine Environment","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; British Columbia Knowledge Development Fund; Washington Department of Fish and Wildlife; Canadian Institutes of Health Research; Washington State University","keywords":"Leptospira; Leptospirosis; Epizootic; Leptospira interrogans; Biology; Serotype; Veterinary medicine; Microbiology; Zoology; Virology; Outbreak; Medicine","score_opus":0.046291361346755225,"score_gpt":0.30613544593688735,"score_spread":0.25984408459013214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157054217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977162,0.00014130252,0.0014156555,0.000012757909,0.0000047943054,0.000047704132,0.0001835091,0.000017815093,0.00046040522],"genre_scores_gemma":[0.9951191,0.00025940235,0.0037825857,0.00005177237,0.000005916248,0.00006941407,0.0004254498,0.000005092135,0.00028123774],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996437,0.000037354053,0.000032236723,0.00018353968,0.000055884222,0.000047176334],"domain_scores_gemma":[0.9995578,0.000088088076,0.00020805349,0.000019386847,0.000086557804,0.000040123574],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002689394,0.00048618336,0.0002074819,0.00062664226,0.00021652733,0.0004826592,0.0002709918,0.000339322,0.00037403268],"category_scores_gemma":[0.00086055376,0.00028197034,0.00014901371,0.0002508876,0.00034975054,0.00025831754,0.00028428962,0.00020130316,0.00014830581],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023479444,0.00007564284,0.17085671,0.00014724958,0.000021977157,0.00034881724,0.00076201186,0.00024453882,0.8192745,0.000069789465,0.00004443312,0.0079195155],"study_design_scores_gemma":[0.000014487772,0.001616685,0.8860158,0.000059261634,0.00007756391,0.0019749876,0.0016726882,0.0011820314,0.106133044,0.000053587155,0.0011755432,0.000024198443],"about_ca_topic_score_codex":0.0019800004,"about_ca_topic_score_gemma":0.0018957928,"teacher_disagreement_score":0.0019800004,"about_ca_system_score_codex":0.00018876145,"about_ca_system_score_gemma":0.00015914542,"threshold_uncertainty_score":0.0039369464},"labels":[],"label_agreement":null},{"id":"W2157119208","doi":"10.1128/jcm.41.5.1936-1941.2003","title":"Comparison of the Pathogenesis of Two Genetically Different H3N2 Influenza A Viruses in Pigs","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Department of Agriculture","keywords":"Virology; Biology; Virus; Reassortment; H5N1 genetic structure; Hemagglutinin (influenza); Neuraminidase; Nucleoprotein; Influenza A virus subtype H5N1; Influenza A virus; Viral replication; Population; Viral shedding; Titer; Antigenic drift; Orthomyxoviridae; Infectious disease (medical specialty); Medicine; Disease","score_opus":0.26045663616731785,"score_gpt":0.5272025553090971,"score_spread":0.26674591914177925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157119208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990225,0.0003907483,0.00018906743,0.000015612915,0.000015644231,0.000025006015,0.000041127532,0.000004830852,0.00029547283],"genre_scores_gemma":[0.9977581,0.00057343073,0.00062170863,0.000119638156,0.000017504008,0.0000834221,0.00039226044,0.000005912701,0.00042806985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995753,0.00009639911,0.000030068897,0.000083031126,0.00006579022,0.00014948781],"domain_scores_gemma":[0.9997727,0.000060195493,0.00004936656,0.000014625914,0.000025253776,0.000077808545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004908501,0.00061327254,0.00042290863,0.0005924713,0.00031919352,0.00046318406,0.00028842516,0.0012455685,0.00024528714],"category_scores_gemma":[0.00026702086,0.00041631787,0.0008618959,0.00013403002,0.00051556464,0.0004224404,0.00040276942,0.00073034916,0.00019337167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093457376,0.00027487573,0.038107783,0.000067286004,0.000047795445,0.0010977385,0.0002041659,0.00014732385,0.9566182,0.00009961284,0.00006486537,0.0023358352],"study_design_scores_gemma":[0.00014593659,0.013989165,0.8552646,0.00004376144,0.00016309603,0.007396137,0.0010413791,0.0021324877,0.11825518,0.00031609813,0.0012010061,0.00005113694],"about_ca_topic_score_codex":0.0009638017,"about_ca_topic_score_gemma":0.0014704682,"teacher_disagreement_score":0.0012455685,"about_ca_system_score_codex":0.0006315485,"about_ca_system_score_gemma":0.0003096186,"threshold_uncertainty_score":0.004582286},"labels":[],"label_agreement":null},{"id":"W2157132384","doi":"10.1128/jcm.41.7.3167-3174.2003","title":"Comparison of LightCycler-Based PCR, COBAS Amplicor CMV Monitor, and pp65 Antigenemia Assays for Quantitative Measurement of Cytomegalovirus Viral Load in Peripheral Blood Specimens from Patients after Solid Organ Transplantation","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital","funders":"China Academy of Chinese Medical Sciences","keywords":"Virology; Betaherpesvirinae; Viral load; Cytomegalovirus; Polymerase chain reaction; Human cytomegalovirus; Virus; Primer (cosmetics); Biology; Real-time polymerase chain reaction; Herpesviridae; Molecular biology; Viral disease; Chemistry; Gene","score_opus":0.0860062088807033,"score_gpt":0.41067830410680173,"score_spread":0.3246720952260984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157132384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9466284,0.0064637787,0.0425132,0.00024003461,0.0003208606,0.00032809735,0.0004530484,0.0008218639,0.0022307758],"genre_scores_gemma":[0.92694414,0.001246053,0.068165675,0.00043062295,0.00017923495,0.0007233895,0.0009880294,0.00012193632,0.0012009814],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9828128,0.0074364883,0.0010070706,0.0030954576,0.0052001523,0.00044794992],"domain_scores_gemma":[0.98591006,0.008948831,0.001365932,0.0008881842,0.0023238922,0.00056310295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008413563,0.0010810507,0.0010455194,0.0022179668,0.0002581846,0.0014185667,0.0008983253,0.0013335833,0.0005560502],"category_scores_gemma":[0.016504167,0.00078406505,0.00050427584,0.0012185205,0.0008239088,0.0006605057,0.0006617151,0.0010255846,0.0006598998],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014972573,0.0014301866,0.34515804,0.0012052259,0.00084006396,0.00041827557,0.0018773781,0.0044301124,0.4594799,0.0006648366,0.001552367,0.16797099],"study_design_scores_gemma":[0.0012521329,0.01622326,0.5410636,0.00029967862,0.00084005477,0.0039652083,0.0005895169,0.064576454,0.36535403,0.0008137774,0.0047601606,0.00026215147],"about_ca_topic_score_codex":0.00056907086,"about_ca_topic_score_gemma":0.0011434354,"teacher_disagreement_score":0.008413563,"about_ca_system_score_codex":0.00065493316,"about_ca_system_score_gemma":0.00046783412,"threshold_uncertainty_score":0.04449576},"labels":[],"label_agreement":null},{"id":"W2157323107","doi":"10.1128/jcm.02107-06","title":"Assessment of Use of Microsatellite Polymorphism Analysis for Improving Spatial Distribution Tracking of <i>Echinococcus multilocularis</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic infections in humans and animals","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Fogarty International Center; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Echinococcus multilocularis; Microsatellite; Biology; Genotyping; Genotype; Genetic diversity; Locus (genetics); Allele; Genetics; Evolutionary biology; Zoology; Echinococcosis; Population; Gene","score_opus":0.08077242009539681,"score_gpt":0.433016029283593,"score_spread":0.3522436091881962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157323107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946287,0.00051607145,0.0042464794,0.000013991432,0.0000047924636,0.000023376133,0.00015820259,0.000026098314,0.00038232325],"genre_scores_gemma":[0.98423463,0.00026430996,0.014979686,0.000010977117,0.000003341111,0.000020264004,0.0002725563,0.000004342422,0.00021001164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990332,0.00031907408,0.00007124394,0.0002773147,0.00023964551,0.000059532453],"domain_scores_gemma":[0.9987011,0.0003850928,0.000377337,0.00006385294,0.000351706,0.00012092882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001181314,0.00036539542,0.00027324245,0.00063834945,0.00015718771,0.0004126842,0.00022224424,0.00040532314,0.00024762566],"category_scores_gemma":[0.0016758204,0.00015236058,0.00021513601,0.00045470087,0.00018066718,0.00023330528,0.00030680533,0.00017509625,0.00017873374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040065986,0.00014889875,0.20383453,0.00020280747,0.00014285231,0.00010416203,0.000319491,0.0011970343,0.75794756,0.00006262116,0.00004861812,0.035590816],"study_design_scores_gemma":[0.000033151115,0.0029680203,0.7623955,0.00005540311,0.00049492414,0.0011351639,0.0005948267,0.013327101,0.21668977,0.00010314441,0.0021457477,0.000057254652],"about_ca_topic_score_codex":0.0013836735,"about_ca_topic_score_gemma":0.0028418247,"teacher_disagreement_score":0.0013836735,"about_ca_system_score_codex":0.0001261673,"about_ca_system_score_gemma":0.00021886262,"threshold_uncertainty_score":0.006247461},"labels":[],"label_agreement":null},{"id":"W2157437937","doi":"10.1128/jcm.01502-14","title":"Using Crude Whole-Genome Assemblies of Neisseria gonorrhoeae as a Platform for Strain Analysis: Clonal Spread of Gonorrhea Infection in Saskatchewan, Canada","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan","funders":"U.S. Public Health Service","keywords":"Neisseria gonorrhoeae; Biology; Gonorrhea; Neisseria meningitidis; Single-nucleotide polymorphism; Housekeeping gene; Population; Genome; Genetics; Whole genome sequencing; Phenotype; SNP array; Penicillin; Neisseriaceae; Microbiology; Multilocus sequence typing; Genotype; Virology; Gene; Antibiotics; Bacteria; Medicine","score_opus":0.06391507429190457,"score_gpt":0.3884684744849333,"score_spread":0.32455340019302875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157437937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94538176,0.0005424887,0.023236921,0.0001656597,0.000020480125,0.0002526016,0.0261878,0.0003390223,0.003873217],"genre_scores_gemma":[0.85702187,0.0010199724,0.07324355,0.00018153447,0.000006312773,0.0002653493,0.06376655,0.00025744596,0.004237444],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99951386,0.000050422892,0.00003233935,0.00015163678,0.00014915993,0.00010266042],"domain_scores_gemma":[0.9987613,0.00021332277,0.000093532784,0.00013609251,0.0006583732,0.00013730988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007343307,0.0005781755,0.00048084627,0.0014643073,0.0012597464,0.0011561232,0.00070844806,0.0003412334,0.0010058144],"category_scores_gemma":[0.0027199336,0.00032649928,0.00050400867,0.0035508873,0.00031459148,0.00025372472,0.0007893746,0.0005889048,0.00033975448],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084159814,0.00014641286,0.39377224,0.0004409671,0.0016388902,0.0011090724,0.00414452,0.027485853,0.4470995,0.0026325136,0.0064682397,0.11422014],"study_design_scores_gemma":[0.000053996522,0.0000742795,0.930863,0.00006314411,0.0002749625,0.00020721044,0.0017762161,0.02539857,0.01966281,0.0007139107,0.020824427,0.00008745631],"about_ca_topic_score_codex":0.8956155,"about_ca_topic_score_gemma":0.9704954,"teacher_disagreement_score":0.10438448,"about_ca_system_score_codex":0.0052794656,"about_ca_system_score_gemma":0.013105122,"threshold_uncertainty_score":0.20999843},"labels":[],"label_agreement":null},{"id":"W2157546903","doi":"10.1128/jcm.42.9.3963-3969.2004","title":"Comprehensive Detection and Serotyping of Human Adenoviruses by PCR and Sequencing","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Serotype; Hypervariable region; Virology; Biology; Primer (cosmetics); Mastadenovirus; Polymerase chain reaction; Gene; Adenoviridae; Genetics; Genetic enhancement","score_opus":0.06470079731915156,"score_gpt":0.388412504146051,"score_spread":0.3237117068268994,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157546903","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48068628,0.007411625,0.49383703,0.00034033373,0.00018417217,0.00159329,0.009470043,0.0018907574,0.004586435],"genre_scores_gemma":[0.36795118,0.0050613303,0.60699785,0.00038556586,0.00007384953,0.0010768983,0.014267438,0.00029286044,0.0038929463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982377,0.0002469154,0.00025316648,0.00046555293,0.00062178867,0.00017489315],"domain_scores_gemma":[0.9974396,0.0007477247,0.00037510088,0.00026597877,0.00096612796,0.0002054774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013270362,0.0012161933,0.0015725205,0.0021988857,0.0003401557,0.0006702588,0.00041921748,0.0006017955,0.00067669037],"category_scores_gemma":[0.002888923,0.00059467094,0.0009113529,0.0009120765,0.00050358754,0.0005114046,0.00053439225,0.0008346376,0.0012449103],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000110950336,0.000052782612,0.002895577,0.00021834034,0.000025202882,0.00009798442,0.00013797398,0.0004279155,0.97029996,0.00017811144,0.00020506406,0.025350144],"study_design_scores_gemma":[0.000035480898,0.0008759237,0.0300264,0.000095712225,0.00023100604,0.0013088188,0.0002659251,0.0036340167,0.9512259,0.00046992704,0.011775277,0.00005562262],"about_ca_topic_score_codex":0.0018416853,"about_ca_topic_score_gemma":0.0029777056,"teacher_disagreement_score":0.0021988857,"about_ca_system_score_codex":0.00032811845,"about_ca_system_score_gemma":0.0010718161,"threshold_uncertainty_score":0.007018149},"labels":[],"label_agreement":null},{"id":"W2157812383","doi":"10.1128/jcm.01344-09","title":"Switching Gears for an Influenza Pandemic: Validation of a Duplex Reverse Transcriptase PCR Assay for Simultaneous Detection and Confirmatory Identification of Pandemic (H1N1) 2009 Influenza Virus","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Public Health Agency of Canada; Queen Elizabeth II Health Sciences Centre","funders":"Centers for Disease Control and Prevention; University of Ottawa","keywords":"Virology; Virus; Influenza A virus; Multiplex; Biology; Orthomyxoviridae; Real-time polymerase chain reaction; Pandemic; Viral culture; Reverse transcription polymerase chain reaction; Hemagglutinin (influenza); Immunoassay; Microbiology; Medicine; Infectious disease (medical specialty); Immunology; Antibody; Gene; Coronavirus disease 2019 (COVID-19); Pathology; Disease","score_opus":0.17939536386767,"score_gpt":0.46926372562916535,"score_spread":0.28986836176149533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157812383","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9481802,0.0007768727,0.048550613,0.00007542368,0.00013664916,0.00042909675,0.0004882626,0.00033359992,0.0010292892],"genre_scores_gemma":[0.8431361,0.0006873496,0.1505513,0.00033410254,0.000058840506,0.0008182314,0.0018570318,0.00007134015,0.002485783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99599695,0.00093539595,0.00034629987,0.0011639692,0.0013951734,0.0001620883],"domain_scores_gemma":[0.99803346,0.00087096886,0.0002397324,0.00020665435,0.00057194266,0.000077227494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029844744,0.000946547,0.0007463259,0.00048274777,0.000266958,0.0006324686,0.0006489494,0.00090781087,0.00067643414],"category_scores_gemma":[0.00426944,0.00054746756,0.00044939638,0.00023356013,0.0006200014,0.00057713216,0.00034515548,0.0006116355,0.00057771447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002827571,0.000115361814,0.0076182527,0.000086072294,0.00001829913,0.000043360345,0.0001541649,0.0003189954,0.98267394,0.000052241492,0.00007721035,0.0085594095],"study_design_scores_gemma":[0.000047140504,0.0019063902,0.021888662,0.00003061821,0.00010847005,0.00050350046,0.00014683166,0.010171677,0.9632396,0.000082024424,0.0018292718,0.000045754416],"about_ca_topic_score_codex":0.0008672353,"about_ca_topic_score_gemma":0.0013510109,"teacher_disagreement_score":0.0029844744,"about_ca_system_score_codex":0.00039773146,"about_ca_system_score_gemma":0.0005206974,"threshold_uncertainty_score":0.015783608},"labels":[],"label_agreement":null},{"id":"W2158045024","doi":"10.1128/jcm.00669-11","title":"Development and Validation of a Comparative Genomic Fingerprinting Method for High-Resolution Genotyping of Campylobacter jejuni","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Lethbridge","funders":"Health Canada; Government of Canada; Public Health Agency of Canada","keywords":"Multilocus sequence typing; Campylobacter jejuni; Subtyping; Biology; Campylobacter; Genotyping; Typing; High Resolution Melt; Campylobacteriosis; Context (archaeology); Genetics; Campylobacter coli; Computational biology; Microbiology; Genotype; Gene","score_opus":0.18291747005882858,"score_gpt":0.36889933229078337,"score_spread":0.1859818622319548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158045024","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8808493,0.0019641605,0.11125032,0.00028694118,0.00007868759,0.0011981935,0.0013946046,0.0004067751,0.002571018],"genre_scores_gemma":[0.6756207,0.0009846129,0.31785527,0.00021689183,0.000027867913,0.00044394287,0.0030412192,0.000081250786,0.0017282101],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9938665,0.0014013376,0.00032148798,0.0013034065,0.0027126183,0.00039458726],"domain_scores_gemma":[0.9980819,0.00056896236,0.000193104,0.0002342958,0.0007763952,0.0001453511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004336813,0.00086837594,0.00056231127,0.0018684329,0.00062101777,0.00081067503,0.0010105416,0.0012477285,0.00039991015],"category_scores_gemma":[0.0055573434,0.00037223278,0.0005636071,0.0010204308,0.0008426431,0.00030690216,0.00074978935,0.000652217,0.0003814117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016739957,0.00019458157,0.015329298,0.0001352714,0.000042802396,0.0001375011,0.00023211383,0.0012987659,0.9292673,0.00025010182,0.00016365359,0.052781336],"study_design_scores_gemma":[0.000110370034,0.0025246106,0.12464232,0.00014525394,0.0001928213,0.0017179946,0.00035523387,0.016871653,0.8397921,0.00028307375,0.013231199,0.00013345761],"about_ca_topic_score_codex":0.028774237,"about_ca_topic_score_gemma":0.022624427,"teacher_disagreement_score":0.028774237,"about_ca_system_score_codex":0.0011725136,"about_ca_system_score_gemma":0.0027162784,"threshold_uncertainty_score":0.057213485},"labels":[],"label_agreement":null},{"id":"W2158137570","doi":"10.1128/jcm.00601-06","title":"Invasive Meningococcal Disease in Quebec, Canada, Due to an Emerging Clone of ST-269 Serogroup B Meningococci with Serotype Antigen 17 and Serosubtype Antigen P1.19 (B:17:P1.19)","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec; Public Health Agency of Canada","funders":"Health Canada; European Commission; University of Oxford; Wellcome Trust","keywords":"Neisseria meningitidis; Serotype; Meningococcal disease; clone (Java method); Virology; Microbiology; Meningococcal vaccine; Biology; Antigen; Cluster (spacecraft); Neisseriaceae; Immunology; Genetics; Gene; Bacteria; Antibiotics","score_opus":0.02290291761556503,"score_gpt":0.30510788098936215,"score_spread":0.28220496337379714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158137570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.978583,0.0059426147,0.00037809546,0.0015468751,0.00010684839,0.00017547207,0.003879054,0.000041991578,0.009346055],"genre_scores_gemma":[0.9875372,0.0032757684,0.00047945924,0.0006984548,0.000032377917,0.000022060434,0.001562977,0.000008493488,0.0063833683],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99966955,0.000023771416,0.000011829411,0.000051676332,0.00012438002,0.00011880734],"domain_scores_gemma":[0.99936277,0.000032100095,0.000080871745,0.000011300359,0.0002763292,0.0002367108],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002577431,0.00044947263,0.00021147323,0.00076855253,0.0025452261,0.0008757889,0.00074170873,0.0004913611,0.00267571],"category_scores_gemma":[0.000714481,0.0002439861,0.00022615021,0.0014608962,0.0006617794,0.00025639383,0.00036171693,0.0006567339,0.00026608843],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004136168,0.00022875486,0.9377434,0.00023787878,0.00012175675,0.0035958535,0.0013104149,0.00048807875,0.0035502173,0.00042348722,0.013535337,0.038351186],"study_design_scores_gemma":[0.00005379887,0.000113083726,0.98793066,0.000095262556,0.000053405256,0.00090189994,0.0016099247,0.0008015772,0.00033674133,0.00004682238,0.008032661,0.000024150044],"about_ca_topic_score_codex":0.99799085,"about_ca_topic_score_gemma":0.99882394,"teacher_disagreement_score":0.023952425,"about_ca_system_score_codex":0.023952425,"about_ca_system_score_gemma":0.026468454,"threshold_uncertainty_score":0.17378783},"labels":[],"label_agreement":null},{"id":"W2158143284","doi":"10.1128/jcm.03311-13","title":"Evaluation of a Chromogenic Biplate Medium (ChromID MRSA/ChromID S. aureus) for the Simultaneous Detection of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus aureus in Preoperative Screening Samples from the Anterior Nares","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Sanofi Pasteur; British Columbia Centre for Disease Control; European Commission; Michael Smith Health Research BC; Sanofi","keywords":"Staphylococcus aureus; Chromogenic; Microbiology; Anterior nares; Medicine; Methicillin-resistant Staphylococcus aureus; Micrococcaceae; Antibacterial agent; Biology; Bacteria; Antibiotics; Chemistry; Chromatography","score_opus":0.08223177027294822,"score_gpt":0.3811465256914118,"score_spread":0.2989147554184636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158143284","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9637844,0.00468982,0.029192412,0.00016884961,0.000078058845,0.0001643588,0.00023835966,0.00020321691,0.0014806598],"genre_scores_gemma":[0.9240626,0.0017672468,0.072652094,0.00010454634,0.0000435382,0.00011136067,0.0004781109,0.000030091376,0.00075046864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981021,0.00070798537,0.00013694185,0.00020050518,0.00073428464,0.000118239645],"domain_scores_gemma":[0.99772745,0.0012970573,0.000245641,0.00013680091,0.00041570305,0.00017742836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014201967,0.00074767665,0.00044522667,0.0013837604,0.00026438956,0.00044691013,0.00035874106,0.00065399037,0.00072782947],"category_scores_gemma":[0.0022116303,0.00041927022,0.00029876374,0.0004938255,0.00056850543,0.0003398413,0.0004699335,0.0004714165,0.0004302348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006253694,0.00012671346,0.0064366,0.00014618537,0.000018013692,0.00016709947,0.000068040106,0.00009901421,0.9856624,0.000023809753,0.000039204428,0.006587634],"study_design_scores_gemma":[0.000041599447,0.0036831142,0.030063365,0.00003726174,0.0001050955,0.0027584396,0.00011653621,0.0033035837,0.9588368,0.000025798125,0.0009960501,0.000032417152],"about_ca_topic_score_codex":0.0011231172,"about_ca_topic_score_gemma":0.0019354168,"teacher_disagreement_score":0.0014201967,"about_ca_system_score_codex":0.00016731514,"about_ca_system_score_gemma":0.00040336463,"threshold_uncertainty_score":0.007510841},"labels":[],"label_agreement":null},{"id":"W2158293168","doi":"10.1128/jcm.02062-10","title":"Aptima Combo 2 Testing Detected Additional Cases of Neisseria gonorrhoeae Infection in Men and Women in Community Settings","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton; Brampton Civic Hospital","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Gonorrhea; Chlamydiales; Gonococcal infection; Virology; Microbiology; Neisseria; Medicine; Nucleic Acid Amplification Tests; Chlamydia; Biology; Sexually transmitted disease; Immunology; Bacteria; Syphilis; Genetics","score_opus":0.10316226869248026,"score_gpt":0.37070805360775594,"score_spread":0.2675457849152757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158293168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99958366,0.000090124,0.00003291702,0.000015382942,0.0000037587242,0.000006977355,0.00002527304,0.0000033153547,0.0002385964],"genre_scores_gemma":[0.9998293,0.0000245953,0.000040819057,0.000016089341,0.0000073042015,0.0000021388819,0.000017540528,6.099842e-7,0.000061662104],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991049,0.00023047347,0.00006181566,0.00015344148,0.0002083485,0.00024102008],"domain_scores_gemma":[0.99836177,0.00051813235,0.00039276062,0.00012939636,0.00016441029,0.00043363168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068525266,0.0006222625,0.0004188324,0.0010448786,0.00078848563,0.0007062427,0.0003147742,0.000774413,0.00313316],"category_scores_gemma":[0.0035753457,0.0007055034,0.000321826,0.00039274484,0.0007163099,0.0004937857,0.0005834317,0.00059524644,0.00024865268],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030475043,0.00012355341,0.99327034,0.000015710284,0.000025327021,0.0012414344,0.0004043626,0.000022253902,0.001894231,0.000016793178,0.00007943017,0.002601868],"study_design_scores_gemma":[0.00004562088,0.000840076,0.9906955,0.000015828507,0.00004928937,0.0060545723,0.0008766345,0.0002701127,0.0008719877,0.000028860119,0.00023887017,0.000012596334],"about_ca_topic_score_codex":0.0061073545,"about_ca_topic_score_gemma":0.008647439,"teacher_disagreement_score":0.0061073545,"about_ca_system_score_codex":0.00027467744,"about_ca_system_score_gemma":0.0003386206,"threshold_uncertainty_score":0.012143612},"labels":[],"label_agreement":null},{"id":"W2158475197","doi":"10.1128/jcm.01271-10","title":"<i>In Vitro</i> Susceptibility of the Yeast Pathogen <i>Cryptococcus</i> to Fluconazole and Other Azoles Varies with Molecular Genotype","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Medical Research Council; Pfizer Australia; Gilead Sciences; University of Sydney; National Health and Medical Research Council; Pfizer","keywords":"Cryptococcus gattii; Cryptococcosis; Fluconazole; Cryptococcus neoformans; Genotype; Biology; Microbiology; Azole; Flucytosine; Cryptococcus; Genotyping; Amphotericin B; Fungi imperfecti; Broth microdilution; Antifungal; Genetics; Minimum inhibitory concentration; Antibiotics; Gene","score_opus":0.016287130758023925,"score_gpt":0.31806365347284504,"score_spread":0.30177652271482114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158475197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99743026,0.0004142418,0.0005708972,0.00004750064,0.000008379022,0.000017136228,0.00037674545,0.000010096529,0.001124825],"genre_scores_gemma":[0.99746585,0.0002440399,0.0009372977,0.000046181827,0.000005440462,0.00000975871,0.0009186999,0.000006631206,0.0003659558],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99941266,0.00020289943,0.000071005474,0.0000889699,0.00013380684,0.000090690155],"domain_scores_gemma":[0.99954563,0.00019155936,0.00010078712,0.00005960066,0.000070625894,0.00003167925],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040192294,0.00021452027,0.00020522045,0.00026380664,0.00013972384,0.0005148646,0.00014451279,0.00022833441,0.00084791234],"category_scores_gemma":[0.0008257248,0.00013911139,0.00019564315,0.00026510263,0.00018629024,0.00014652403,0.00017595265,0.0002437924,0.000314041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054980774,0.000121650824,0.036064554,0.000071363516,0.000036068654,0.00008769018,0.00008714479,0.00041796544,0.95659846,0.000069709116,0.0002089032,0.0056867427],"study_design_scores_gemma":[0.000020424577,0.0020081527,0.19515407,0.000029148354,0.00006392858,0.0015713476,0.00020591103,0.0020935282,0.79693,0.00009731754,0.0018056801,0.000020449252],"about_ca_topic_score_codex":0.0048430488,"about_ca_topic_score_gemma":0.0046941643,"teacher_disagreement_score":0.0048430488,"about_ca_system_score_codex":0.0002588091,"about_ca_system_score_gemma":0.00017989588,"threshold_uncertainty_score":0.009629726},"labels":[],"label_agreement":null},{"id":"W2158495949","doi":"10.1128/jcm.00571-08","title":"Failure of Cloxacillin in Treatment of a Patient with Borderline Oxacillin-Resistant <i>Staphylococcus aureus</i> Endocarditis","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; Health Sciences Centre; University of British Columbia; University of Manitoba; University of Saskatchewan","funders":"","keywords":"Cloxacillin; Endocarditis; Staphylococcus aureus; Medicine; Coagulase; Staphylococcal infections; Microbiology; Micrococcaceae; Staphylococcus; Antibiotics; Surgery; Antibacterial agent; Penicillin; Bacteria; Biology","score_opus":0.027875567547169022,"score_gpt":0.3148344917196184,"score_spread":0.2869589241724494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158495949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9658095,0.007083203,0.003187437,0.011342282,0.0005421547,0.000096767355,0.00016235569,0.00025448937,0.011521794],"genre_scores_gemma":[0.99535215,0.00097227574,0.0009012048,0.0018669713,0.00025607392,0.000012676656,0.000058781912,0.000040293016,0.0005395371],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9994286,0.00012857733,0.00010845351,0.00008806728,0.00010782977,0.00013849697],"domain_scores_gemma":[0.9973018,0.0011998321,0.00038145384,0.00009642314,0.00019115412,0.0008291882],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000478828,0.0010792973,0.00094401534,0.0011461322,0.001559789,0.000911927,0.00091881136,0.0040962007,0.0008807388],"category_scores_gemma":[0.0048398348,0.00052219245,0.0008820149,0.0004647561,0.0011606943,0.0008921946,0.0004986321,0.0023285302,0.0007297915],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009191987,0.00025068695,0.060989406,0.00016754943,0.000051698982,0.908797,0.0007909228,0.00042085888,0.013687644,0.00036352826,0.0017573397,0.0118042305],"study_design_scores_gemma":[0.000079071346,0.0022619178,0.032035474,0.00016801813,0.00008146877,0.95043945,0.0005299694,0.0019217124,0.009326524,0.00039534317,0.0026996082,0.00006137316],"about_ca_topic_score_codex":0.001995138,"about_ca_topic_score_gemma":0.002793112,"teacher_disagreement_score":0.0040962007,"about_ca_system_score_codex":0.0006825936,"about_ca_system_score_gemma":0.00060398586,"threshold_uncertainty_score":0.00495255},"labels":[],"label_agreement":null},{"id":"W2158618601","doi":"10.1128/jcm.38.7.2512-2515.2000","title":"An Important Proportion of Genital Samples Submitted for <i>Chlamydia trachomatis</i> Detection by PCR Contain Small Amounts of Cellular DNA as Measured by β-Globin Gene Amplification","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Chlamydia trachomatis; Chlamydiaceae; Polymerase chain reaction; Biology; Molecular biology; DNA; Virology; Gene; Genetics","score_opus":0.04220365413382856,"score_gpt":0.33665318785675397,"score_spread":0.2944495337229254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158618601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922253,0.0026604244,0.0031574527,0.0001611479,0.00004056011,0.00008761368,0.0004947252,0.00009164337,0.0010810569],"genre_scores_gemma":[0.9832671,0.0021039129,0.011047647,0.0004418484,0.00009524589,0.00007377671,0.0017107464,0.00007852696,0.0011812011],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977336,0.0005304506,0.000252309,0.0002572895,0.0010015472,0.00022481503],"domain_scores_gemma":[0.99490106,0.0020172524,0.0014399245,0.00035826233,0.0010997094,0.0001837678],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020502587,0.0003767977,0.0006533285,0.0010556203,0.00037188106,0.0008867799,0.00037868932,0.0005372654,0.001689355],"category_scores_gemma":[0.0051869764,0.00041181632,0.00026817303,0.00087442977,0.00059514464,0.00026311286,0.00031397035,0.0002871652,0.0007056174],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068792986,0.0001591778,0.66905606,0.0006382329,0.000069027956,0.0013994642,0.0008274949,0.00017201806,0.27861658,0.00004746833,0.0005939526,0.047732618],"study_design_scores_gemma":[0.000024680472,0.001518452,0.83633554,0.00016480227,0.00011966956,0.00842862,0.0009426966,0.0005664563,0.14569654,0.00008115113,0.00609241,0.000028966913],"about_ca_topic_score_codex":0.0018648338,"about_ca_topic_score_gemma":0.0013485645,"teacher_disagreement_score":0.0020502587,"about_ca_system_score_codex":0.00031782678,"about_ca_system_score_gemma":0.0002776699,"threshold_uncertainty_score":0.010842979},"labels":[],"label_agreement":null},{"id":"W2158630561","doi":"10.1128/jcm.39.6.2358-2359.2001","title":"Streptococcal Meningitis Resulting from Contact with an Infected Horse","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; William Osler Health System; Mount Sinai Hospital","funders":"","keywords":"Horse; Meningitis; Streptococcus equi; Throat; Cerebrospinal fluid; Microbiology; Medicine; Streptococcaceae; Streptococcus; Virology; Biology; Surgery; Bacteria; Internal medicine; Antibiotics","score_opus":0.061093898344650226,"score_gpt":0.39944276055927214,"score_spread":0.3383488622146219,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158630561","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778381,0.004973601,0.0010118317,0.001994071,0.00028264849,0.00012213792,0.00011139519,0.00011269032,0.013553491],"genre_scores_gemma":[0.9951857,0.0021769982,0.00042942204,0.00084958493,0.00049820245,0.000015843034,0.000048779788,0.000012536028,0.00078302185],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99925727,0.00014818597,0.00006813717,0.00010258182,0.00014471984,0.00027910806],"domain_scores_gemma":[0.9984787,0.00047320966,0.00049736263,0.00010661438,0.000088093235,0.00035594872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029825917,0.0025428617,0.0010165892,0.0015217635,0.0031820163,0.0019527838,0.00069277274,0.004917461,0.0027368483],"category_scores_gemma":[0.0040496215,0.0011610592,0.00087492977,0.0012240806,0.001416199,0.0013245814,0.0015310374,0.002957966,0.0010972568],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007649155,0.00007390745,0.01609063,0.000046096775,0.000012314715,0.9810497,0.00041262075,0.00004301739,0.00054059556,0.00006749261,0.00027541307,0.0013117337],"study_design_scores_gemma":[0.000021817024,0.00021307926,0.006966939,0.000044590848,0.000025949828,0.99087393,0.00049251656,0.00012637333,0.00043038884,0.00008805251,0.00070606684,0.000010294199],"about_ca_topic_score_codex":0.0024565603,"about_ca_topic_score_gemma":0.0033556742,"teacher_disagreement_score":0.004917461,"about_ca_system_score_codex":0.0010740208,"about_ca_system_score_gemma":0.000749107,"threshold_uncertainty_score":0.009155631},"labels":[],"label_agreement":null},{"id":"W2158981139","doi":"10.1128/jcm.43.12.5925-5935.2005","title":"Polyphasic Characterization Reveals that the Human Pathogen <i>Mycobacterium peregrinum</i> Type II Belongs to the Bovine Pathogen Species <i>Mycobacterium senegalense</i>","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Biology; Microbiology; Mycobacterium fortuitum; Internal transcribed spacer; Pathogen; Mycobacterium; Ribosomal RNA; Bacteria; Gene; Genetics","score_opus":0.05747040524984985,"score_gpt":0.3506637669353511,"score_spread":0.29319336168550125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158981139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929605,0.0033812302,0.0014998273,0.00011572891,0.000021670228,0.00005151641,0.0005627263,0.000024144128,0.0013825328],"genre_scores_gemma":[0.98962337,0.0013477544,0.005588562,0.00021632761,0.000058894497,0.000039673116,0.0018712332,0.000014870312,0.0012393676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998299,0.000025152967,0.00001641706,0.00005405252,0.00003597191,0.000038399077],"domain_scores_gemma":[0.9995994,0.00006414467,0.00013805326,0.00003730854,0.0000840971,0.00007689876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013945377,0.0003870248,0.00025312885,0.00073224196,0.00018071887,0.00056104676,0.00024703777,0.00035028276,0.0009179225],"category_scores_gemma":[0.00061440404,0.00013177746,0.00018632754,0.00046856562,0.00018422144,0.00029326516,0.00021953142,0.0002265218,0.00042901235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006143283,0.00013283324,0.15888822,0.00032858207,0.0000658167,0.0010940813,0.0007755513,0.00014071928,0.8111699,0.00014596949,0.00070361653,0.025940295],"study_design_scores_gemma":[0.000038304526,0.0017441818,0.8222799,0.00014604148,0.00033472886,0.018277463,0.0018822664,0.0013990991,0.12776609,0.0002316085,0.025865769,0.000034626017],"about_ca_topic_score_codex":0.0023305072,"about_ca_topic_score_gemma":0.0020079748,"teacher_disagreement_score":0.0023305072,"about_ca_system_score_codex":0.00018844243,"about_ca_system_score_gemma":0.00013515892,"threshold_uncertainty_score":0.004633844},"labels":[],"label_agreement":null},{"id":"W2159038482","doi":"10.1128/jcm.00124-09","title":"Interlaboratory Reproducibility of a Single-Locus Sequence-Based Method for Strain Typing of <i>Aspergillus fumigatus</i>","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Health and Long Term Care","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention","keywords":"Aspergillus fumigatus; Typing; Reproducibility; Biology; Locus (genetics); Microbiology; Genetics; Chemistry; Gene; Chromatography","score_opus":0.11522474522991173,"score_gpt":0.43744465177990266,"score_spread":0.32221990654999094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159038482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":"reproducibility","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":"reproducibility","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8013206,0.0017482104,0.18458427,0.00059828773,0.0006212819,0.0012664611,0.0013966283,0.0013796971,0.007084511],"genre_scores_gemma":[0.91967934,0.00017630572,0.07510329,0.00039990246,0.0001243206,0.0008140384,0.002383181,0.00027768116,0.0010418647],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9024748,0.0457715,0.010165237,0.017857738,0.022224475,0.0015062274],"domain_scores_gemma":[0.8738532,0.057170194,0.010391825,0.03702091,0.020134326,0.0014295479],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.051690187,0.0009917945,0.00079512765,0.0020310094,0.0010998552,0.0020516815,0.0015427322,0.0017158965,0.00095480314],"category_scores_gemma":[0.07920427,0.0007816859,0.0010065429,0.0015074628,0.0020901405,0.00065233203,0.0018238011,0.0011609669,0.0012040822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033879317,0.0009355266,0.4220303,0.00070060324,0.0019846507,0.0002723553,0.0051968554,0.0047916397,0.44716826,0.0016460199,0.0023022373,0.10958362],"study_design_scores_gemma":[0.00038785645,0.005030764,0.5098271,0.0002856775,0.001439053,0.0017468802,0.00092532503,0.01944643,0.44548765,0.001694944,0.013407328,0.0003210501],"about_ca_topic_score_codex":0.0018574214,"about_ca_topic_score_gemma":0.0026156763,"teacher_disagreement_score":0.94830984,"about_ca_system_score_codex":0.0010738944,"about_ca_system_score_gemma":0.00096881506,"threshold_uncertainty_score":0.2733671},"labels":[],"label_agreement":null},{"id":"W2159243479","doi":"10.1128/jcm.44.1.60-66.2006","title":"Direct Identification of Mycobacteria in Primary Liquid Detection Media by Partial Sequencing of the 65-Kilodalton Heat Shock Protein Gene","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"16S ribosomal RNA; Biology; Concordance; Identification (biology); Microbiology; Gene; Genetics","score_opus":0.026108804518541272,"score_gpt":0.3183285283761771,"score_spread":0.29221972385763584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159243479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97006065,0.0006309331,0.027328108,0.00010324674,0.000026502583,0.00019093837,0.00028020068,0.00010417885,0.0012752549],"genre_scores_gemma":[0.9379428,0.00084270944,0.056975186,0.00018932999,0.000034770164,0.00017210028,0.001077853,0.000040744057,0.0027243858],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993303,0.00014832956,0.00005430989,0.00009755626,0.0002453774,0.00012413888],"domain_scores_gemma":[0.9990446,0.0003257106,0.00015433622,0.000088130386,0.00029731417,0.00008996413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007706926,0.0004904869,0.0004521837,0.0003078235,0.00027433483,0.00063630246,0.0003453661,0.0003231335,0.0012081376],"category_scores_gemma":[0.0013968259,0.00020097964,0.00038392041,0.00030911068,0.0003123614,0.0003729195,0.00052224996,0.0004331539,0.0008388635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103228354,0.000055873017,0.0044080094,0.000050163075,0.0000047460007,0.00008471808,0.00003983624,0.00016184394,0.987855,0.00003632791,0.000039945193,0.0071603316],"study_design_scores_gemma":[0.000012760677,0.0014721113,0.02369371,0.00001988683,0.00004116892,0.00055867457,0.00017735102,0.003332346,0.9691436,0.00009301745,0.0014421134,0.000013336205],"about_ca_topic_score_codex":0.0022599872,"about_ca_topic_score_gemma":0.003694529,"teacher_disagreement_score":0.0022599872,"about_ca_system_score_codex":0.00024160916,"about_ca_system_score_gemma":0.000469783,"threshold_uncertainty_score":0.004493654},"labels":[],"label_agreement":null},{"id":"W2159246434","doi":"10.1128/jcm.01690-06","title":"Risk Factors for the Presence of High-Level Shedders of<i>Escherichia coli</i>O157 on Scottish Farms","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Wellcome Trust","keywords":"Escherichia coli; Microbiology; Biology; Enterobacteriaceae; Genetics; Gene","score_opus":0.05157026175538665,"score_gpt":0.3717934200826073,"score_spread":0.32022315832722065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159246434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.999683,0.000032953594,0.00007343582,0.000034238026,0.0000016362096,0.0000030333572,0.00004733484,0.0000040783066,0.00012038805],"genre_scores_gemma":[0.9997298,0.000024790868,0.00008282731,0.000012399896,0.0000037181674,0.0000017711312,0.00007417537,0.0000011310899,0.00006947613],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990808,0.00027720997,0.00007000816,0.00014977051,0.00018840133,0.00023374475],"domain_scores_gemma":[0.9942147,0.0014084994,0.0028063052,0.00029817232,0.0004599802,0.000812318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001402272,0.00038187936,0.00032730398,0.0006468157,0.00042830114,0.0008587615,0.00045178732,0.00058530754,0.0016055997],"category_scores_gemma":[0.004239636,0.0002962171,0.0005221006,0.00065682875,0.00057746394,0.0004053583,0.00058715645,0.0005894307,0.00020260042],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005994795,0.000028185657,0.9982589,0.000003966535,0.000022592825,0.00012303711,0.00008358824,0.00012214917,0.00038194173,0.000008304455,0.000057860576,0.0008496588],"study_design_scores_gemma":[0.0000018429661,0.00011695763,0.9992124,0.00000400723,0.000007928188,0.00007031288,0.00011663116,0.0003862056,0.00003073635,0.000010343267,0.00003985884,0.0000026880568],"about_ca_topic_score_codex":0.021258418,"about_ca_topic_score_gemma":0.023276241,"teacher_disagreement_score":0.021258418,"about_ca_system_score_codex":0.00055088353,"about_ca_system_score_gemma":0.00058832945,"threshold_uncertainty_score":0.04226935},"labels":[],"label_agreement":null},{"id":"W2159417419","doi":"10.1128/jcm.39.8.2884-2890.2001","title":"Malaria Rapid Diagnostic Devices: Performance Characteristics of the <i>Para</i> Sight F Device Determined in a Multisite Field Study","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"U.S. Food and Drug Administration","keywords":"Parasitemia; Malaria; Plasmodium falciparum; Plasmodium vivax; Plasmodium malariae; Virology; Biology; Rapid diagnostic test; Antigen; Tropical medicine; Diagnosis of malaria; Diagnostic test; Medicine; Immunology; Pathology; Veterinary medicine","score_opus":0.04458791092128623,"score_gpt":0.3665159433729838,"score_spread":0.3219280324516976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159417419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99684083,0.0003948097,0.0013040935,0.000023006314,0.000008487695,0.00006230822,0.00038882816,0.000020950944,0.0009567685],"genre_scores_gemma":[0.99825174,0.00008677742,0.0008852267,0.00003819224,0.000010214756,0.00003404474,0.0003901072,0.000006617256,0.00029698585],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989735,0.00031518337,0.00010652915,0.00023260096,0.0002701429,0.00010203496],"domain_scores_gemma":[0.9956945,0.0022679227,0.00071286864,0.00016132764,0.0009118503,0.00025146193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018311772,0.00031984085,0.00020981266,0.00056432013,0.0001738096,0.00034810428,0.00019442919,0.00044661324,0.0010998532],"category_scores_gemma":[0.0054710284,0.00012415466,0.0001882623,0.0004491437,0.0002098999,0.00039393667,0.00019773554,0.00021569057,0.0004916204],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012370553,0.001323139,0.7969306,0.0002105945,0.00015896582,0.00036707093,0.00061934954,0.0008916456,0.15564156,0.00015352668,0.00088784506,0.030445114],"study_design_scores_gemma":[0.00018973272,0.021771997,0.91864693,0.000023457154,0.00011216597,0.0020249963,0.0003232659,0.005149894,0.049872365,0.00008731331,0.0017581002,0.000039809376],"about_ca_topic_score_codex":0.0011257789,"about_ca_topic_score_gemma":0.00059864856,"teacher_disagreement_score":0.0018311772,"about_ca_system_score_codex":0.00018397708,"about_ca_system_score_gemma":0.0001949971,"threshold_uncertainty_score":0.009684265},"labels":[],"label_agreement":null},{"id":"W2159466554","doi":"10.1128/jcm.00043-08","title":"Evaluation of Three Automated Nucleic Acid Amplification Systems for Detection of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> in First-Void Urine Specimens","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Nucleic acid; Gonorrhea; Virology; Chlamydiales; Urine; Chlamydiaceae; Microbiology; Biology; Chlamydia; Immunology","score_opus":0.0959883036618343,"score_gpt":0.3755170596326124,"score_spread":0.2795287559707781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159466554","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.961818,0.0016820254,0.032738484,0.00020881553,0.0002032238,0.0012419107,0.00041761436,0.00085949694,0.0008304631],"genre_scores_gemma":[0.8778159,0.0008327745,0.11623229,0.0005528751,0.000113915325,0.0014805275,0.001667923,0.00009836734,0.0012054086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.982688,0.0044069416,0.0013394917,0.0037095041,0.007047301,0.00080878264],"domain_scores_gemma":[0.9858379,0.0067737415,0.0015942389,0.0011197585,0.0039207335,0.0007536248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009572595,0.0015507701,0.0013057453,0.0020878946,0.001183286,0.0016401034,0.0031196452,0.0025552534,0.00080322556],"category_scores_gemma":[0.013297873,0.0019345512,0.0012430323,0.0012010187,0.0014779248,0.0010464336,0.001199913,0.0008536966,0.0004517053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.025164299,0.005412392,0.1097826,0.002008976,0.0013051585,0.00036327433,0.001955815,0.007548598,0.68743,0.0007400502,0.0015655532,0.15672328],"study_design_scores_gemma":[0.0036550523,0.04264127,0.16023818,0.00027709693,0.0018643832,0.0021314565,0.0005109455,0.06869803,0.71235824,0.0005284583,0.0065825083,0.00051442866],"about_ca_topic_score_codex":0.0040537836,"about_ca_topic_score_gemma":0.0048251515,"teacher_disagreement_score":0.009572595,"about_ca_system_score_codex":0.0022620868,"about_ca_system_score_gemma":0.001881232,"threshold_uncertainty_score":0.050625324},"labels":[],"label_agreement":null},{"id":"W2159502851","doi":"10.1128/jcm.42.5.1897-1902.2004","title":"Distribution of Insertion Sequences Associated with Tn <i>1546</i> -Like Elements among <i>Enterococcus faecium</i> Isolates from Patients in Korea","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Amplicon; Pulsed-field gel electrophoresis; Biology; Enterococcus faecium; Intergenic region; Molecular epidemiology; Polymerase chain reaction; Genetics; Gene cluster; Genetic diversity; Cluster (spacecraft); Gene; Genome; Microbiology; Genotype; Population; Bacteria; Medicine","score_opus":0.020671661709468478,"score_gpt":0.30843242845862023,"score_spread":0.28776076674915174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159502851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99965894,0.000074896976,0.00005839366,0.000009960221,0.0000013464249,0.000004504249,0.00005459742,0.0000026283276,0.00013483063],"genre_scores_gemma":[0.9995127,0.000077140496,0.00016163428,0.000017418022,0.000002852284,0.0000030644699,0.00015436407,0.0000023292143,0.000068466245],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99970585,0.00004162444,0.00006867699,0.000089092464,0.00003346375,0.00006126892],"domain_scores_gemma":[0.9995203,0.000070494636,0.00020840949,0.000024459234,0.000064135864,0.00011220045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014348736,0.00032734204,0.00024405823,0.0008864947,0.00020724248,0.0005090983,0.00019128589,0.00039669446,0.0007649715],"category_scores_gemma":[0.0007038121,0.00026053595,0.00027876647,0.00067189167,0.00028988268,0.00026409404,0.00027193027,0.00022106389,0.00013957618],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003154871,0.00005618705,0.9433805,0.00007067223,0.000056666304,0.001961208,0.0006211264,0.00010741281,0.04721972,0.000046020374,0.00013845596,0.0060267006],"study_design_scores_gemma":[0.000019002206,0.0003080475,0.9835534,0.000029499139,0.00007903638,0.0074713835,0.0015608043,0.00028375094,0.0058134533,0.000037046746,0.0008271483,0.000017425802],"about_ca_topic_score_codex":0.0025054847,"about_ca_topic_score_gemma":0.0022983328,"teacher_disagreement_score":0.0025054847,"about_ca_system_score_codex":0.00021167818,"about_ca_system_score_gemma":0.00017431549,"threshold_uncertainty_score":0.004981816},"labels":[],"label_agreement":null},{"id":"W2159539552","doi":"10.1128/jcm.03104-12","title":"Escherichia coli XL10-Gold Bacteria Produce Bacteriophage","year":2012,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Escherichia coli; Bacteriophage; Bacteria; Microbiology; Biology; Enterobacteriaceae; Virology; Genetics; Gene","score_opus":0.0227407255007375,"score_gpt":0.34652027462669005,"score_spread":0.3237795491259525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159539552","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12992814,0.028781272,0.16355303,0.2998618,0.07024322,0.0036263207,0.013297802,0.013248263,0.2774602],"genre_scores_gemma":[0.37740868,0.0270601,0.15650967,0.09171171,0.009131613,0.0014833,0.012517637,0.0007553501,0.32342187],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882466,0.00036417242,0.000078272526,0.000111374335,0.00051095133,0.00011058805],"domain_scores_gemma":[0.99917513,0.00035029097,0.0001126386,0.00014757105,0.000079720834,0.00013465155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011214622,0.000838909,0.00060436974,0.00031453688,0.00033956295,0.0010095504,0.0009415689,0.002475995,0.0115455175],"category_scores_gemma":[0.0021117628,0.00040192355,0.00022417065,0.00033652777,0.0005232378,0.000427672,0.0004898854,0.0040711854,0.021697337],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009927028,0.00038453456,0.0017440082,0.0011099353,0.000049637318,0.005020553,0.00022138958,0.0002900934,0.3862199,0.023072297,0.49800628,0.08288866],"study_design_scores_gemma":[0.00024035395,0.0006273875,0.0011691834,0.00013266785,0.000026241454,0.00935983,0.00008482438,0.0018988784,0.09784192,0.0072098933,0.8813615,0.00004737],"about_ca_topic_score_codex":0.00020305433,"about_ca_topic_score_gemma":0.0003581335,"teacher_disagreement_score":0.0115455175,"about_ca_system_score_codex":0.0006563535,"about_ca_system_score_gemma":0.00035073387,"threshold_uncertainty_score":0.03862357},"labels":[],"label_agreement":null},{"id":"W2159803968","doi":"10.1128/jcm.38.10.3780-3784.2000","title":"<i>Bacillus anthracis</i> Diversity in Kruger National Park","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kruger (Canada)","funders":"National Institute of General Medical Sciences","keywords":"Bacillus anthracis; National park; Biology; Genotype; Biological dispersal; Genetic diversity; Ungulate; Adaptation (eye); Ecology; Genetics; Demography; Gene; Population; Habitat","score_opus":0.05292270939510081,"score_gpt":0.3679907087444777,"score_spread":0.3150679993493769,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159803968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860555,0.00022617802,0.00003644797,0.000026585767,0.0000013036881,0.0000053849626,0.00044170255,0.0000043053783,0.00065252703],"genre_scores_gemma":[0.9986204,0.00015061886,0.00021741011,0.000017092509,0.0000026230343,0.0000065656427,0.00061154127,0.0000022694146,0.00037157506],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997594,0.000026154848,0.000015696434,0.00008808534,0.00005630638,0.00005435176],"domain_scores_gemma":[0.9997305,0.000016671662,0.00012583211,0.000010377874,0.000051258972,0.00006529473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014584005,0.00009642755,0.00014133546,0.001145526,0.00047801767,0.00043490966,0.00023255861,0.00012021819,0.0012419511],"category_scores_gemma":[0.00024509942,0.00008767791,0.000054781864,0.00073054514,0.0003471892,0.00019501627,0.00032861403,0.00017890561,0.00022875606],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011529002,0.000047855996,0.95406955,0.00006177949,0.000034439152,0.00037303774,0.002025661,0.0001365,0.02698817,0.00013794159,0.00056554214,0.015444035],"study_design_scores_gemma":[0.0000014472301,0.000028481216,0.99791175,0.000007335503,0.0000034529598,0.0002926914,0.0004789738,0.000031371557,0.00029378457,0.000012713837,0.00093444047,0.0000035155608],"about_ca_topic_score_codex":0.027344063,"about_ca_topic_score_gemma":0.068577185,"teacher_disagreement_score":0.027344063,"about_ca_system_score_codex":0.0005028975,"about_ca_system_score_gemma":0.00030008002,"threshold_uncertainty_score":0.054369748},"labels":[],"label_agreement":null},{"id":"W2160075424","doi":"10.1128/jcm.38.8.2807-2813.2000","title":"Comparison and Application of a Novel Genotyping Method, Semiautomated Primer-Specific and Mispair Extension Analysis, and Four Other Genotyping Assays for Detection of Hepatitis C Virus Mixed-Genotype Infections","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services","funders":"","keywords":"Genotyping; Genotype; Virology; Biology; Hepatitis C virus; Population; Polymerase chain reaction; Hepacivirus; Hepatitis C; Virus; Medicine; Genetics; Gene","score_opus":0.08282703419548425,"score_gpt":0.4321194990604069,"score_spread":0.34929246486492266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160075424","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89076126,0.003188457,0.104125634,0.00010036264,0.00013123255,0.00017818832,0.00027440093,0.00033063075,0.0009098543],"genre_scores_gemma":[0.8121608,0.0007236928,0.18560542,0.00012781101,0.000039597293,0.00017696334,0.0005002386,0.000038523747,0.0006269487],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9918786,0.0036419777,0.00054299505,0.0015007922,0.002228854,0.00020679443],"domain_scores_gemma":[0.99005896,0.0057279253,0.0010652441,0.0009415604,0.0019480044,0.00025830488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0049123215,0.00068497605,0.0007886036,0.0018688792,0.0002520937,0.00066702295,0.0009398731,0.0010252217,0.0002810203],"category_scores_gemma":[0.008341094,0.00075606426,0.0007669762,0.0009257976,0.0005324066,0.0005465791,0.0005016517,0.00062552345,0.00022760604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023669698,0.00042810795,0.09884578,0.00070571626,0.00076493475,0.00015513599,0.00058161543,0.0046247016,0.71175486,0.00052303425,0.00034501732,0.17890416],"study_design_scores_gemma":[0.0001746147,0.0061985836,0.33213377,0.000100078185,0.0009353255,0.0038597437,0.00018949872,0.10741621,0.54296035,0.0005414382,0.005228684,0.00026163372],"about_ca_topic_score_codex":0.00079107756,"about_ca_topic_score_gemma":0.0014979381,"teacher_disagreement_score":0.0049123215,"about_ca_system_score_codex":0.00037668512,"about_ca_system_score_gemma":0.00047711306,"threshold_uncertainty_score":0.025979102},"labels":[],"label_agreement":null},{"id":"W2160113463","doi":"10.1128/jcm.00136-09","title":"Interaction between Host Cells and Septicemic<i>Salmonella enterica</i>Serovar Typhimurium Isolates from Pigs","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Salmonella enterica; Serotype; Microbiology; Biology; Salmonella; Pathogen; Phagocytosis; Monocyte; Virulence; Host (biology); Virology; Bacteria; Immunology; Gene","score_opus":0.04765027511391461,"score_gpt":0.3219062563868264,"score_spread":0.2742559812729118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160113463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994111,0.00015903756,0.00010991298,0.000014228742,0.000004793088,0.000005379304,0.00003658816,0.0000022046365,0.00025673176],"genre_scores_gemma":[0.9990453,0.000133147,0.0002872037,0.000054057873,0.000010334634,0.00001462534,0.00020119407,0.0000019409742,0.00025207078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99949324,0.00018396626,0.00004360877,0.000079985824,0.000057675454,0.00014148306],"domain_scores_gemma":[0.99956614,0.00017800574,0.00008410281,0.000026563266,0.00006047556,0.000084607935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041057428,0.00030344806,0.00037482902,0.00031598742,0.00025335894,0.00050543586,0.00010890802,0.00048078166,0.0009974878],"category_scores_gemma":[0.00047241853,0.00022654558,0.00020644,0.00019022387,0.00030654424,0.00022462958,0.00031282302,0.0002938319,0.00026230884],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020325256,0.00023402426,0.14337383,0.00016600694,0.000043646643,0.000978325,0.0005167682,0.00007984006,0.8494848,0.00005569845,0.0001065716,0.0029279408],"study_design_scores_gemma":[0.000033239834,0.0055579096,0.8903438,0.000037311438,0.00009656287,0.003168661,0.0019571017,0.0006215141,0.09694921,0.00007988192,0.0011299129,0.000025024072],"about_ca_topic_score_codex":0.00051305466,"about_ca_topic_score_gemma":0.0006774231,"teacher_disagreement_score":0.0009974878,"about_ca_system_score_codex":0.00014915787,"about_ca_system_score_gemma":0.00018663336,"threshold_uncertainty_score":0.0033369064},"labels":[],"label_agreement":null},{"id":"W2160142367","doi":"10.1128/jcm.00364-10","title":"First Description of an Extended-Spectrum-β-Lactamase-Producing Multidrug-Resistant <i>Escherichia fergusonii</i> Strain in a Patient with Cystitis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Shared Health","funders":"","keywords":"Microbiology; Multiple drug resistance; Escherichia coli; Enterobacteriaceae; Strain (injury); Virology; Biology; Medicine; Antibiotics; Genetics; Gene; Internal medicine","score_opus":0.01444061014716266,"score_gpt":0.2809017170729177,"score_spread":0.2664611069257551,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160142367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96105325,0.0037139033,0.003629864,0.008828881,0.0011505716,0.0003358576,0.0005227986,0.00021936481,0.020545447],"genre_scores_gemma":[0.9935371,0.00085517694,0.0010111872,0.002016668,0.0006876588,0.000022241355,0.000119083066,0.000040771018,0.0017099811],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9992969,0.00007410316,0.000067395296,0.00021764102,0.00009860528,0.000245321],"domain_scores_gemma":[0.9975414,0.00072761654,0.00036360277,0.00015003141,0.00017615652,0.0010411822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032982777,0.0017083529,0.0013206123,0.0017214688,0.0026194393,0.0014526393,0.0014790074,0.0059902673,0.00232854],"category_scores_gemma":[0.0040358305,0.0011850365,0.0014320995,0.0008838767,0.0019866393,0.0019819047,0.001579379,0.0044188206,0.00085539476],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006900928,0.000107516695,0.0093099,0.000048878657,0.000010451026,0.9867004,0.00049397536,0.000046589576,0.001128105,0.00017879345,0.00068161736,0.0012247426],"study_design_scores_gemma":[0.000024211407,0.0003753466,0.015623067,0.000046947887,0.000028613513,0.98102343,0.00039264062,0.00024302797,0.0010205352,0.00015899072,0.001030884,0.000032298092],"about_ca_topic_score_codex":0.0042812587,"about_ca_topic_score_gemma":0.005079191,"teacher_disagreement_score":0.0059902673,"about_ca_system_score_codex":0.0014964326,"about_ca_system_score_gemma":0.0009101154,"threshold_uncertainty_score":0.010857463},"labels":[],"label_agreement":null},{"id":"W2160259663","doi":"10.1128/jcm.00165-15","title":"Evaluation of Ebola Virus Inactivation Procedures for Plasmodium falciparum Malaria Diagnostics","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Ontario; Toronto General Hospital; Toronto Public Health","funders":"","keywords":"Malaria; Plasmodium falciparum; Ebola virus; Virology; Diagnostic test; Transmission (telecommunications); Plasmodium (life cycle); Medicine; Ebolavirus; Biology; Immunology; Virus; Pediatrics; Parasite hosting","score_opus":0.23676902808981365,"score_gpt":0.4962370671207708,"score_spread":0.25946803903095716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160259663","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.920464,0.006576424,0.06902129,0.00027131708,0.00027762272,0.00077574054,0.00035145643,0.00026703018,0.0019950871],"genre_scores_gemma":[0.8773226,0.0032883328,0.11602982,0.00018402495,0.00008676175,0.00054664374,0.00068297796,0.00012499769,0.001733838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9949243,0.0022562412,0.00040035776,0.0006608383,0.0014166416,0.00034153534],"domain_scores_gemma":[0.99440986,0.0033445328,0.00071314623,0.00037841947,0.0009737983,0.00018017099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045062597,0.0010786215,0.00055553927,0.00091088284,0.00047511075,0.0007925825,0.0007569693,0.00096057524,0.0010964517],"category_scores_gemma":[0.008581022,0.00050689606,0.00051918434,0.0005915395,0.00080706936,0.00091412495,0.0004942823,0.00074933644,0.00052385806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013278213,0.00040049956,0.006651753,0.00041698632,0.00006908716,0.00009472932,0.00041380842,0.00065718824,0.9698873,0.00018947084,0.000098600285,0.01979277],"study_design_scores_gemma":[0.000026721127,0.0043690135,0.013677036,0.00006291949,0.0001689549,0.00039799616,0.00018060075,0.004205271,0.9747171,0.00012616071,0.0020220752,0.000046228037],"about_ca_topic_score_codex":0.000849113,"about_ca_topic_score_gemma":0.0009875036,"teacher_disagreement_score":0.0045062597,"about_ca_system_score_codex":0.00031836904,"about_ca_system_score_gemma":0.0005973644,"threshold_uncertainty_score":0.023831666},"labels":[],"label_agreement":null},{"id":"W2160436097","doi":"10.1128/jcm.39.8.2880-2883.2001","title":"Comparison of the BacT/Alert PF Pediatric FAN Blood Culture Bottle with the Standard Pediatric Blood Culture Bottle, the Pedi-BacT","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services","funders":"","keywords":"Bottle; Blood culture; Medicine; Microbiology; Biology; Antibiotics","score_opus":0.02857144932038592,"score_gpt":0.345127704355599,"score_spread":0.31655625503521306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160436097","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930756,0.0007092396,0.0040009473,0.00013555813,0.00015422517,0.000095153664,0.0005024993,0.00007875143,0.001247978],"genre_scores_gemma":[0.97277164,0.00097307167,0.021756,0.00022094604,0.00014458384,0.00013213462,0.0022872789,0.00007036744,0.0016439364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9931179,0.0013722334,0.0007150444,0.00077887805,0.0037763384,0.00023948282],"domain_scores_gemma":[0.9880151,0.00424023,0.0020096914,0.00053461496,0.004629965,0.0005703713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039589573,0.0006798594,0.00075778854,0.0012273969,0.00033947278,0.0013074577,0.0007996625,0.00046417123,0.0009337848],"category_scores_gemma":[0.01584786,0.00039154166,0.0004872699,0.0013373195,0.00033153422,0.0011534278,0.0007160932,0.00040555984,0.00043837517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019972589,0.0020002308,0.34994674,0.0019400144,0.0005433228,0.0010294813,0.0028409797,0.0016581183,0.48581913,0.00072393345,0.0042509283,0.12927453],"study_design_scores_gemma":[0.00023244222,0.02937127,0.56366324,0.00024642967,0.0005446364,0.004670949,0.0016402195,0.018086476,0.37293196,0.00013876053,0.008240793,0.00023281726],"about_ca_topic_score_codex":0.00504585,"about_ca_topic_score_gemma":0.004357832,"teacher_disagreement_score":0.00504585,"about_ca_system_score_codex":0.0008462689,"about_ca_system_score_gemma":0.0012483015,"threshold_uncertainty_score":0.020937204},"labels":[],"label_agreement":null},{"id":"W2161226076","doi":"10.1128/jcm.01787-07","title":"Multiplex PCR That Can Distinguish between Immunologically Cross- Reactive Serovar 3, 6, and 8<i>Actinobacillus pleuropneumoniae</i>Strains","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Actinobacillus pleuropneumoniae; Serotype; Multiplex polymerase chain reaction; Biology; Microbiology; Multiplex; Actinobacillus; Gene; Polymerase chain reaction; Virology; Genetics; Bacteria","score_opus":0.09867166538309687,"score_gpt":0.40518717483060857,"score_spread":0.3065155094475117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161226076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6868344,0.0042821937,0.296966,0.00040213024,0.00045946034,0.0005636412,0.002234412,0.00249313,0.0057646744],"genre_scores_gemma":[0.6607313,0.0013824052,0.32813892,0.00046963867,0.00021334094,0.0008439022,0.0026653928,0.000100296595,0.005454712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988656,0.00017010307,0.00010680572,0.00041908052,0.0002859,0.00015254543],"domain_scores_gemma":[0.9980725,0.0006393617,0.0006067512,0.00013974843,0.00031499492,0.00022656684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009448949,0.0012235886,0.0005936773,0.0011378737,0.00019831426,0.00062448636,0.00056311983,0.0009534723,0.0014157324],"category_scores_gemma":[0.0019821366,0.0005854702,0.00035793995,0.00039560985,0.0003890625,0.00061042357,0.0004812397,0.0007947857,0.0011696679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032341378,0.00020048076,0.005793642,0.0001190975,0.000027800319,0.00017368971,0.00008023572,0.0004498872,0.9629592,0.0002852016,0.000554598,0.029032916],"study_design_scores_gemma":[0.00007231562,0.0016193521,0.014695334,0.00007654641,0.000121455065,0.0040616347,0.00011410528,0.011451501,0.9576839,0.0007402422,0.009290621,0.000073039206],"about_ca_topic_score_codex":0.00019220366,"about_ca_topic_score_gemma":0.00033924502,"teacher_disagreement_score":0.0014157324,"about_ca_system_score_codex":0.00025845153,"about_ca_system_score_gemma":0.00022777278,"threshold_uncertainty_score":0.004997134},"labels":[],"label_agreement":null},{"id":"W2161233359","doi":"10.1128/jcm.42.8.3532-3537.2004","title":"Genetic Variability of the G Glycoprotein Gene of Human Metapneumovirus","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Human metapneumovirus; Biology; Genetics; Virology; Metapneumovirus; Gene; Nucleic acid sequence; Sequence analysis; Genetic variation; Genetic diversity; Phylogenetic tree; Respiratory tract infections; Respiratory system; Population; Medicine","score_opus":0.0964286668576239,"score_gpt":0.4473442737832405,"score_spread":0.3509156069256166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161233359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993456,0.00017547088,0.000110853165,0.000010837362,0.0000014665853,0.0000048550773,0.00014702586,0.000003379578,0.00020046456],"genre_scores_gemma":[0.99887806,0.00012893777,0.000327152,0.000018332348,0.0000025791323,0.000004060518,0.0004706525,0.000002471117,0.00016769522],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99989974,0.000008714008,0.0000041664343,0.00002860725,0.00003235085,0.000026397398],"domain_scores_gemma":[0.99992156,0.000016012142,0.000017235941,0.000006398205,0.000016604943,0.000022139913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007755933,0.00018330051,0.0001308641,0.00042699804,0.00023235737,0.00022082418,0.0001151116,0.00015373132,0.0003230011],"category_scores_gemma":[0.0003802318,0.00008997332,0.00011972911,0.00033757545,0.00021753364,0.00007741981,0.00014090794,0.00016734273,0.000083449],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005787617,0.00003587386,0.14410488,0.00004981296,0.00007040232,0.0005987142,0.0006332859,0.00046019902,0.84321976,0.00023218225,0.00020407948,0.0098120095],"study_design_scores_gemma":[0.00002548622,0.00032077386,0.9632418,0.00001599255,0.000054812503,0.001656629,0.00024783157,0.0010005139,0.030875104,0.000162212,0.00238192,0.00001697439],"about_ca_topic_score_codex":0.03377865,"about_ca_topic_score_gemma":0.031309582,"teacher_disagreement_score":0.03377865,"about_ca_system_score_codex":0.00075735786,"about_ca_system_score_gemma":0.00052200136,"threshold_uncertainty_score":0.06716406},"labels":[],"label_agreement":null},{"id":"W2161266174","doi":"10.1128/jcm.00825-07","title":"Multicenter Trials Need To Use the Same Assay for Hepatitis C Virus Viral Load Determination","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital","funders":"","keywords":"Viral load; Virology; Multicenter study; Hepatitis C virus; Virus; Hepacivirus; Viral disease; Viral hepatitis; Medicine; Flaviviridae; Biology; Pathology; Randomized controlled trial","score_opus":0.1798313834750351,"score_gpt":0.49468337041603194,"score_spread":0.3148519869409968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161266174","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":"methods","model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":"methods","domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5915676,0.11817776,0.14762002,0.047886975,0.024809673,0.04610466,0.0057270266,0.001883674,0.0162226],"genre_scores_gemma":[0.6796648,0.009526749,0.2315055,0.03520249,0.005104191,0.026078882,0.009693814,0.00061620306,0.002607295],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.7414788,0.20798391,0.026311405,0.008650587,0.012645352,0.00292992],"domain_scores_gemma":[0.65366423,0.1413653,0.061675332,0.053607218,0.08047446,0.00921351],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.28710124,0.0022205927,0.009570055,0.0017450475,0.0026474004,0.0048873606,0.003776197,0.006994145,0.002751877],"category_scores_gemma":[0.22460046,0.0011243573,0.0036922076,0.0052425233,0.002609476,0.0071806265,0.0020397748,0.004137016,0.002004551],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.1573185,0.023981774,0.24569127,0.010419607,0.019335916,0.00053493533,0.001546426,0.005871533,0.04559405,0.0043549244,0.020891758,0.4644593],"study_design_scores_gemma":[0.091144785,0.3650384,0.35258454,0.0043239794,0.0128744,0.0018755455,0.0028022435,0.007910689,0.05644137,0.0103864195,0.09330518,0.0013125042],"about_ca_topic_score_codex":0.0020858094,"about_ca_topic_score_gemma":0.0030909304,"teacher_disagreement_score":0.71289873,"about_ca_system_score_codex":0.0023603332,"about_ca_system_score_gemma":0.004804939,"threshold_uncertainty_score":0.8791311},"labels":[],"label_agreement":null},{"id":"W2161468351","doi":"10.1128/jcm.01989-13","title":"Clinical Prediction and Diagnosis of Neurosyphilis in HIV-Infected Patients with Early Syphilis","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Public Health Agency of Canada; Centre Hospitalier de l’Université de Montréal; Ste. Anne's Hospital; Cégep de Lévis","funders":"","keywords":"Rapid plasma reagin; Medicine; Syphilis; Neurosyphilis; Treponema; Lumbar puncture; Titer; Gastroenterology; Internal medicine; Viremia; White blood cell; Immunology; Cerebrospinal fluid; Serology; Antibody; Virology; Human immunodeficiency virus (HIV)","score_opus":0.028033835697832393,"score_gpt":0.32738236654638636,"score_spread":0.29934853084855395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161468351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99930155,0.00025386686,0.00006822609,0.000033094395,0.000007477397,0.0000070134274,0.000035024823,0.0000029309874,0.0002908378],"genre_scores_gemma":[0.9997336,0.00007394681,0.000067179186,0.00001299824,0.000017500854,0.0000035667963,0.00005674388,7.403268e-7,0.000033617296],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993291,0.0002524463,0.00009718008,0.000080200676,0.00013506267,0.000105943465],"domain_scores_gemma":[0.99552464,0.0018976033,0.0013384747,0.00012964018,0.00031944094,0.0007901845],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008300008,0.0004405836,0.00038261694,0.0015822621,0.0004890747,0.00082344806,0.0004572135,0.0007130261,0.0012353637],"category_scores_gemma":[0.0073624374,0.00043209715,0.00027561106,0.00066258217,0.0005767533,0.000588101,0.00047217205,0.0007904838,0.00030331212],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009238424,0.000020826445,0.9987005,0.000003177385,0.000005226257,0.0003695105,0.000025942276,0.00003332179,0.00013074766,0.0000062550344,0.000026885806,0.00058513414],"study_design_scores_gemma":[0.000016972355,0.00018370133,0.99458104,0.000013381882,0.00001673624,0.003828871,0.00019914402,0.00084259146,0.00018205929,0.000042931402,0.000085616484,0.0000069260677],"about_ca_topic_score_codex":0.0013416441,"about_ca_topic_score_gemma":0.0013762002,"teacher_disagreement_score":0.0015822621,"about_ca_system_score_codex":0.00023637434,"about_ca_system_score_gemma":0.00034544533,"threshold_uncertainty_score":0.004389465},"labels":[],"label_agreement":null},{"id":"W2161771809","doi":"10.1128/jcm.01228-08","title":"Characterization of a Canadian Mink H3N2 Influenza A Virus Isolate Genetically Related to Triple Reassortant Swine Influenza Virus","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Shared Health; Agriculture Food and Rural Development; Nova Scotia Department of Agriculture; Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mink; Virology; Virus; Biology; Population; Influenza A virus; H5N1 genetic structure; Orthomyxoviridae; Veterinary virology; Medicine; Infectious disease (medical specialty); Coronavirus disease 2019 (COVID-19); Disease","score_opus":0.12617289644908383,"score_gpt":0.4149533606207644,"score_spread":0.2887804641716806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161771809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966575,0.00037590592,0.00030520637,0.000111190035,0.000035742745,0.0000770409,0.00074551423,0.0000066622015,0.0016851722],"genre_scores_gemma":[0.9935196,0.0004360618,0.0016227053,0.00019631391,0.000022129148,0.000026336314,0.0023614443,0.0000128156025,0.0018025751],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997669,0.000009639024,0.000010679973,0.00004719439,0.000090400936,0.000075047064],"domain_scores_gemma":[0.99962974,0.000032697957,0.00003395458,0.000017845485,0.00016373665,0.00012199397],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000113079215,0.000457518,0.00031999304,0.00062206475,0.0010016504,0.0005602815,0.00040899235,0.00048167104,0.0006751965],"category_scores_gemma":[0.00054005557,0.00016062697,0.00037771638,0.000668689,0.0004315807,0.00020828903,0.00029675447,0.0004712808,0.0002676244],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033409175,0.000107395,0.07058779,0.000119127595,0.000045598492,0.0035377021,0.0013425387,0.00018974603,0.9180877,0.00025379058,0.00044903698,0.0049453718],"study_design_scores_gemma":[0.000043655615,0.0009807162,0.9021808,0.000032326436,0.00013429817,0.009653152,0.0025562039,0.001131473,0.07159459,0.00009223931,0.011539589,0.000060995128],"about_ca_topic_score_codex":0.5450425,"about_ca_topic_score_gemma":0.52343076,"teacher_disagreement_score":0.4549575,"about_ca_system_score_codex":0.0024782927,"about_ca_system_score_gemma":0.0028872683,"threshold_uncertainty_score":0.91527367},"labels":[],"label_agreement":null},{"id":"W2161865728","doi":"10.1128/jcm.42.8.3594-3599.2004","title":"Genomic Analysis Distinguishes <i>Mycobacterium africanum</i>","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research; Wellcome Trust; McGill University; Novartis Foundation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Biology; Mycobacterium tuberculosis; Mycobacterium tuberculosis complex; Tuberculosis; Genetics; genomic DNA; Phylogenetics; Sequence analysis; DNA; Gene","score_opus":0.05901758583494773,"score_gpt":0.40677913288330797,"score_spread":0.34776154704836026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161865728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99553335,0.0006101876,0.0018294974,0.00007282434,0.000008914675,0.000022843802,0.00089856196,0.000023474615,0.0010003622],"genre_scores_gemma":[0.993897,0.0003649592,0.003313879,0.00007523391,0.00001622133,0.00001790162,0.0019322543,0.000008511905,0.0003740502],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987996,0.000023962717,0.000007668988,0.000037975195,0.000020666967,0.000029833065],"domain_scores_gemma":[0.9998196,0.000062104475,0.00005105297,0.000020184805,0.000026841646,0.000020380827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010806368,0.00017233215,0.00013585434,0.00065253134,0.00013510029,0.0002484136,0.0001245152,0.0002847562,0.00080848765],"category_scores_gemma":[0.00044956862,0.00008309927,0.0001677383,0.00036259822,0.00019874773,0.00010686555,0.00019428466,0.0002206459,0.0002880613],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012411765,0.000018715818,0.012119,0.000043525622,0.000008093063,0.00011383801,0.00008221298,0.000038818223,0.98394763,0.00005841583,0.00003088213,0.003414763],"study_design_scores_gemma":[0.000015549767,0.0009326148,0.6103416,0.00004423815,0.000103269595,0.0034242887,0.0008135939,0.0010544856,0.3759351,0.00031263716,0.0070092543,0.000013302211],"about_ca_topic_score_codex":0.00080274465,"about_ca_topic_score_gemma":0.00070650596,"teacher_disagreement_score":0.00080848765,"about_ca_system_score_codex":0.0000777845,"about_ca_system_score_gemma":0.000074691794,"threshold_uncertainty_score":0.0027046204},"labels":[],"label_agreement":null},{"id":"W2161938456","doi":"10.1128/jcm.42.5.2203-2206.2004","title":"Use of β-Lactamase Inhibitors in Disk Tests To Detect Plasmid-Mediated AmpC β-Lactamases","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Southern Methodist University; F. Hoffmann-La Roche","keywords":"Cefotetan; Plasmid; Antibiotics; Microbiology; Biology; Chemistry; Antibiotic resistance; DNA; Genetics","score_opus":0.032482328204426585,"score_gpt":0.3354658015041032,"score_spread":0.3029834732996766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161938456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9622195,0.010430065,0.02313723,0.00017680309,0.00005746145,0.00029264885,0.00037310165,0.000333923,0.0029792446],"genre_scores_gemma":[0.93809694,0.0031995794,0.05607562,0.00009388493,0.00003726754,0.00020601424,0.00049266935,0.00003085771,0.001767247],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842286,0.00072671816,0.00013461165,0.00017591816,0.0004657148,0.000074184725],"domain_scores_gemma":[0.99786854,0.0011189359,0.00039865164,0.00011719721,0.00028597083,0.00021069382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008813131,0.00087886443,0.0007403035,0.00088306266,0.00016126693,0.00054083625,0.00060089823,0.0006989441,0.0009466309],"category_scores_gemma":[0.0020021887,0.00038759786,0.00019988764,0.00046608216,0.0004133902,0.00042866464,0.00032956907,0.00046391625,0.0006732643],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043604604,0.00017163843,0.006660065,0.000127559,0.000015403913,0.00009706482,0.0000455056,0.00016122493,0.9844625,0.000037613885,0.000039479204,0.0077458],"study_design_scores_gemma":[0.00006003197,0.0028824348,0.021133935,0.000024601104,0.00005886013,0.0013600163,0.000052315096,0.002553821,0.96968013,0.000060226717,0.0021089017,0.00002473548],"about_ca_topic_score_codex":0.0006124215,"about_ca_topic_score_gemma":0.0012730671,"teacher_disagreement_score":0.0009466309,"about_ca_system_score_codex":0.00024958185,"about_ca_system_score_gemma":0.00020401241,"threshold_uncertainty_score":0.0046609044},"labels":[],"label_agreement":null},{"id":"W2162070063","doi":"10.1128/jcm.40.5.1705-1708.2002","title":"Calculation of the Stability of the IS <i>6110</i> Banding Pattern in Patients with Persistent <i>Mycobacterium tuberculosis</i> Disease","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Research Foundation","keywords":"Mycobacterium tuberculosis; Sputum; Tuberculosis; Population; Molecular epidemiology; Biology; Epidemiology; Mutation rate; Disease; Medicine; Genetics; Internal medicine; Pathology; Genotype","score_opus":0.04624475966016655,"score_gpt":0.3234788643252054,"score_spread":0.27723410466503884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162070063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868304,0.00017215322,0.0008911177,0.000020526091,0.0000029074097,0.000004533752,0.00005331868,0.0000111818745,0.0001612808],"genre_scores_gemma":[0.9990839,0.000046565772,0.00068452116,0.000008349563,0.0000056566596,0.000003927284,0.00012201332,0.0000043291607,0.00004089687],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99946696,0.00021188555,0.00008889891,0.00008487429,0.000098741664,0.000048649905],"domain_scores_gemma":[0.9948914,0.0023999,0.001689342,0.00036365452,0.00040005313,0.00025563338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012664896,0.00023905947,0.00035317132,0.0010148349,0.00021198983,0.0007786434,0.00025055485,0.0005456172,0.00036548756],"category_scores_gemma":[0.010806356,0.00022810245,0.00024350063,0.0005536373,0.0002809951,0.00048812648,0.0002704366,0.00049964053,0.00030380182],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049169257,0.00002465608,0.98816675,0.000013035672,0.000023582928,0.00020346873,0.00012659651,0.0004647383,0.0030592564,0.000030549614,0.00005742307,0.0073382678],"study_design_scores_gemma":[0.000016407233,0.0005887281,0.9862403,0.000011295718,0.000054948207,0.002923701,0.00019031046,0.005822498,0.0036257727,0.00012378719,0.00038832737,0.000013952887],"about_ca_topic_score_codex":0.0006886442,"about_ca_topic_score_gemma":0.0002970259,"teacher_disagreement_score":0.0012664896,"about_ca_system_score_codex":0.00026799183,"about_ca_system_score_gemma":0.00017131244,"threshold_uncertainty_score":0.0066979527},"labels":[],"label_agreement":null},{"id":"W2162209360","doi":"10.1128/jcm.00414-10","title":"The <i>Streptococcus milleri</i> Population of a Cystic Fibrosis Clinic Reveals Patient Specificity and Intraspecies Diversity","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus milleri; Cystic fibrosis; Streptococcus; Microbiology; Streptococcaceae; Biology; Population; Medicine; Pathology; Bacteria; Genetics; Antibiotics","score_opus":0.028746458096726313,"score_gpt":0.35201268715231293,"score_spread":0.3232662290555866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162209360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99973637,0.000027572542,0.000036182464,0.00002700445,8.102312e-7,0.0000022697616,0.000026791078,0.000002243731,0.0001407687],"genre_scores_gemma":[0.99969995,0.000024915505,0.0000678634,0.00004782347,0.0000065471027,0.000004473567,0.000065598746,0.0000019322583,0.00008097653],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995962,0.00010835383,0.00003571703,0.00009855535,0.00007482445,0.00008628914],"domain_scores_gemma":[0.9995215,0.00013169921,0.00012539723,0.00003070668,0.000056854842,0.00013397411],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002785765,0.00018796169,0.00024019701,0.00077675626,0.0005257329,0.0006013649,0.00015278377,0.00055106444,0.001829522],"category_scores_gemma":[0.0017264492,0.000147498,0.00012172885,0.00035347094,0.0003924275,0.00026776578,0.00034546817,0.00033197386,0.0004252659],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023298533,0.00007598195,0.96885186,0.000015929325,0.00002284183,0.0008895466,0.0019892822,0.00005981755,0.022659829,0.00007342592,0.00023853952,0.004889897],"study_design_scores_gemma":[0.000009707668,0.00042536767,0.99092007,0.00000890136,0.000018136709,0.0049007847,0.0014494839,0.00039026915,0.0013468004,0.000044660635,0.00047445908,0.00001125055],"about_ca_topic_score_codex":0.0022133896,"about_ca_topic_score_gemma":0.0018290299,"teacher_disagreement_score":0.0022133896,"about_ca_system_score_codex":0.00017637241,"about_ca_system_score_gemma":0.00016760846,"threshold_uncertainty_score":0.0061203837},"labels":[],"label_agreement":null},{"id":"W2162305834","doi":"10.1128/jcm.42.5.2282-2284.2004","title":"Use of the Vitek-1 and Vitek-2 Systems for Detection of Constitutive and Inducible Macrolide Resistance in Group B Streptococci","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Toronto; Sunnybrook Health Science Centre; Mount Sinai Hospital","funders":"","keywords":"Erythromycin; Microbiology; Clindamycin; Agar; Group B; Biology; Agar diffusion test; Antibiotics; Medicine; Bacteria; Internal medicine; Staphylococcus aureus; Genetics","score_opus":0.060764024224855405,"score_gpt":0.3532201958041498,"score_spread":0.29245617157929443,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162305834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788386,0.0006138956,0.0010323379,0.000023306884,0.0000069117914,0.00004218919,0.000075735355,0.0000108239055,0.00031095266],"genre_scores_gemma":[0.9967283,0.0002721165,0.0025812413,0.00003656955,0.000011535632,0.000032259133,0.0001713633,0.000006761146,0.00015992783],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99559706,0.002090477,0.00040804598,0.0006890096,0.0010196136,0.00019579232],"domain_scores_gemma":[0.9934465,0.0030969835,0.001541277,0.0006492811,0.0008486169,0.00041736418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036810525,0.0005676973,0.0005426159,0.0010480668,0.00024420625,0.000595734,0.00050731224,0.0007043519,0.00058617146],"category_scores_gemma":[0.009743758,0.0005030428,0.00023519839,0.0006257035,0.00051543297,0.0006255118,0.00038538792,0.00066795584,0.00030511757],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024380751,0.00066790776,0.9368641,0.000091336005,0.000079988684,0.0002695284,0.00034936058,0.00023400041,0.032800656,0.000055892677,0.00011444658,0.026034746],"study_design_scores_gemma":[0.00019707209,0.012272739,0.9594157,0.000034203727,0.00012130034,0.004865071,0.00018326288,0.0019114168,0.020022728,0.000058852846,0.00088005286,0.000037692156],"about_ca_topic_score_codex":0.000929299,"about_ca_topic_score_gemma":0.0007895123,"teacher_disagreement_score":0.0036810525,"about_ca_system_score_codex":0.00029704714,"about_ca_system_score_gemma":0.0003158284,"threshold_uncertainty_score":0.019467473},"labels":[],"label_agreement":null},{"id":"W2162370156","doi":"10.1128/jcm.02411-05","title":"Sensitivity Analysis and Potential Uses of a Novel Gamma Interferon Release Assay for Diagnosis of Tuberculosis","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Public Health Service; National Institutes of Health; National Health Laboratory Service; University of Cape Town; Medical Research Council; South African Medical Research Council; Aeras Global Tuberculosis Vaccine Foundation; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; McGill University; American Educational Research Association","keywords":"Medicine; Sputum; Tuberculosis; Tuberculin; Interferon gamma release assay; Mycobacterium tuberculosis; Tuberculosis diagnosis; Immunology; Sputum culture; Latent tuberculosis; Internal medicine; Virology; Pathology","score_opus":0.050178779785156606,"score_gpt":0.39418502508614744,"score_spread":0.34400624530099083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162370156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90460855,0.01588009,0.07471497,0.00039853,0.00018735896,0.0002110384,0.0004726252,0.00036112114,0.0031657799],"genre_scores_gemma":[0.9834118,0.0005775949,0.01547131,0.000121966455,0.000059514365,0.000042916694,0.00019804815,0.000014792146,0.000102045866],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9652542,0.025658628,0.0014179868,0.0022512292,0.0050379885,0.0003799759],"domain_scores_gemma":[0.88019186,0.105575174,0.0052086883,0.0038777462,0.00471517,0.00043129807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0228329,0.0010358716,0.0011283116,0.0022880961,0.00023054454,0.0017905044,0.0008687145,0.0012631689,0.0003531451],"category_scores_gemma":[0.0691329,0.00052292715,0.0017960491,0.0011193964,0.0006565252,0.00084863853,0.0007133836,0.0008892145,0.00017568494],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00970527,0.00069825485,0.68381304,0.0010035742,0.004468993,0.000998966,0.00047559818,0.08803478,0.07155568,0.0015395302,0.00057738525,0.137129],"study_design_scores_gemma":[0.00031751438,0.011077795,0.34493485,0.00033814996,0.0031222282,0.009180954,0.00030292786,0.53993905,0.083134994,0.003507491,0.0037311292,0.0004129302],"about_ca_topic_score_codex":0.0008094142,"about_ca_topic_score_gemma":0.0006668831,"teacher_disagreement_score":0.0228329,"about_ca_system_score_codex":0.000956688,"about_ca_system_score_gemma":0.00041749544,"threshold_uncertainty_score":0.12075335},"labels":[],"label_agreement":null},{"id":"W2162688443","doi":"10.1128/jcm.00477-14","title":"16S rRNA Gene Sequencing, Multilocus Sequence Analysis, and Mass Spectrometry Identification of the Proposed New Species “Clostridium neonatale”","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Necrotizing enterocolitis; 16S ribosomal RNA; Microbiology; Multilocus sequence typing; Ribosomal RNA; Clostridium; Gene; Biology; Genetics; Internal medicine; Genotype; Bacteria","score_opus":0.03429992731241314,"score_gpt":0.33562701754131324,"score_spread":0.3013270902289001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162688443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96728945,0.00827435,0.016528914,0.0012978452,0.00035897808,0.00035802522,0.0022929823,0.000102384976,0.0034970476],"genre_scores_gemma":[0.9288809,0.006237614,0.056669317,0.0003758811,0.00008239156,0.0001158178,0.0044991435,0.000026065552,0.0031129173],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99920696,0.000104283055,0.0000889554,0.0001532372,0.00034627513,0.000100326004],"domain_scores_gemma":[0.9990048,0.00010244768,0.00021984379,0.000072598974,0.0004493521,0.00015106719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008255439,0.0005713925,0.00045756254,0.0010507371,0.0005270025,0.00070830825,0.0004941266,0.00061723834,0.00042521037],"category_scores_gemma":[0.0021772294,0.00018476624,0.0003646304,0.0010830521,0.0005165388,0.00039020283,0.0004270658,0.0004090259,0.00026941084],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064572116,0.00017814884,0.053334396,0.00058419554,0.0000867078,0.0024574965,0.0006039954,0.00072202977,0.8941467,0.00071901217,0.0008313278,0.045690253],"study_design_scores_gemma":[0.000069318354,0.0013766743,0.37441015,0.00044107428,0.0003698515,0.009790752,0.0029274644,0.006845181,0.563977,0.0012965971,0.038363423,0.0001324889],"about_ca_topic_score_codex":0.010558327,"about_ca_topic_score_gemma":0.011835463,"teacher_disagreement_score":0.010558327,"about_ca_system_score_codex":0.0010409376,"about_ca_system_score_gemma":0.001959248,"threshold_uncertainty_score":0.02099377},"labels":[],"label_agreement":null},{"id":"W2162691703","doi":"10.1128/jcm.42.12.5582-5587.2004","title":"Pulsed-Field Gel Electrophoresis Study of <i>Mycobacterium abscessus</i> Isolates Previously Affected by DNA Degradation","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Pulsed-field gel electrophoresis; Biology; Gel electrophoresis; Microbiology; Polymerase chain reaction; genomic DNA; Restriction enzyme; DNA profiling; Mycobacterium abscessus; Genotype; Genetics; Molecular biology; Mycobacterium; DNA; Bacteria; Gene","score_opus":0.022588445230541574,"score_gpt":0.35392116325347506,"score_spread":0.33133271802293346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162691703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99577844,0.00047763225,0.0028792853,0.000041167383,0.000016239239,0.000025732721,0.00015956926,0.000023279877,0.00059858366],"genre_scores_gemma":[0.99333996,0.00045989113,0.005079879,0.00004973839,0.000014990952,0.000022921517,0.00056534115,0.000015462747,0.0004517306],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99978167,0.000052916967,0.000027368864,0.000046792677,0.000055157547,0.00003600054],"domain_scores_gemma":[0.9995202,0.00010315196,0.0001167263,0.000028584283,0.00016765969,0.000063635765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021276416,0.00024302886,0.00023301363,0.00038327387,0.0001705113,0.00029924978,0.00016791096,0.00023062214,0.0003649133],"category_scores_gemma":[0.0006962051,0.000103516664,0.00022056072,0.0003669714,0.00018316353,0.00020981506,0.00016478113,0.00025688077,0.00023731559],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009721207,0.00004955877,0.0046195644,0.00007059444,0.000010139308,0.00022155822,0.00015234607,0.000041610983,0.99333936,0.00003065522,0.000029124765,0.0013382713],"study_design_scores_gemma":[0.000018260549,0.0015459332,0.15948252,0.00005805238,0.00013439654,0.004873338,0.0007646588,0.0016616853,0.82835186,0.00012278232,0.002958871,0.0000276725],"about_ca_topic_score_codex":0.0009404141,"about_ca_topic_score_gemma":0.00048714495,"teacher_disagreement_score":0.0009404141,"about_ca_system_score_codex":0.00009836346,"about_ca_system_score_gemma":0.000114285525,"threshold_uncertainty_score":0.0018699169},"labels":[],"label_agreement":null},{"id":"W2163000974","doi":"10.1128/jcm.02461-13","title":"Comparative Performances of HIV-1 RNA Load Assays at Low Viral Load Levels: Results of an International Collaboration","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver","funders":"","keywords":"Concordance; Viremia; Viral load; Virology; TaqMan; Medicine; Beagle; Human immunodeficiency virus (HIV); Immunology; Biology; Real-time polymerase chain reaction; Internal medicine; Gene; Genetics","score_opus":0.05919428876812759,"score_gpt":0.38710689602084014,"score_spread":0.32791260725271254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163000974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91299665,0.017958425,0.038389664,0.0010486696,0.00058601564,0.000420248,0.0011754974,0.0003013479,0.027123589],"genre_scores_gemma":[0.9681273,0.002170333,0.025412472,0.00027802231,0.00015703723,0.00016259003,0.0016641027,0.00014409597,0.0018840451],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.94973755,0.03028589,0.0045010396,0.0056749657,0.008416342,0.001384121],"domain_scores_gemma":[0.9286749,0.02857282,0.005747836,0.009232835,0.025622832,0.002148713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.055128627,0.0013020482,0.00094505167,0.0030013467,0.0010017644,0.0031031687,0.0012169442,0.001212041,0.00095084915],"category_scores_gemma":[0.04265503,0.00042700904,0.0011630434,0.0027852831,0.0013990479,0.0011148842,0.002461405,0.0013469029,0.00066574325],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037832507,0.00080360495,0.5780568,0.0016082525,0.0038263735,0.0008012013,0.016051766,0.0028815193,0.083610065,0.0032215796,0.0040059267,0.30134964],"study_design_scores_gemma":[0.00027535151,0.004286931,0.7881788,0.0013307685,0.0037033062,0.0037180502,0.0063785333,0.0052979686,0.14662454,0.0020792435,0.03780489,0.00032164695],"about_ca_topic_score_codex":0.0017283832,"about_ca_topic_score_gemma":0.0022773934,"teacher_disagreement_score":0.055128627,"about_ca_system_score_codex":0.00082149706,"about_ca_system_score_gemma":0.001324075,"threshold_uncertainty_score":0.29155147},"labels":[],"label_agreement":null},{"id":"W2163027123","doi":"10.1128/jcm.02386-09","title":"Circulation of Mumps Virus Genotypes in Spain from 1996 to 2007","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Instituto de Salud Carlos III","keywords":"Genotype; Outbreak; Mumps virus; Virology; Genotyping; Biology; Epidemiology; Virus; Molecular epidemiology; Medicine; Genetics; Internal medicine","score_opus":0.03969829328659161,"score_gpt":0.3893316780131431,"score_spread":0.3496333847265515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163027123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99620724,0.0009523473,0.00010313138,0.00006805265,0.000017503857,0.000013037953,0.0018267769,0.00001672954,0.00079525204],"genre_scores_gemma":[0.9909247,0.0012141867,0.00043215975,0.00013584072,0.0000322903,0.00002853405,0.0061158673,0.000014036992,0.0011023517],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996456,0.00005882174,0.000034479413,0.00008002053,0.00007320582,0.000107925516],"domain_scores_gemma":[0.99918383,0.00010386567,0.00029581718,0.0000639697,0.0002461551,0.000106222345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082979834,0.00033802792,0.00053868856,0.0012353937,0.0003090105,0.0008904745,0.00031478982,0.0004866901,0.000573557],"category_scores_gemma":[0.0013249846,0.00026227208,0.00034912277,0.0011244708,0.00024445367,0.0002687387,0.0004686907,0.00041065025,0.00024128683],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012958306,0.000059438924,0.97426456,0.00010166538,0.00010900468,0.00051221455,0.0005904686,0.0004719176,0.0026810765,0.0000407132,0.0013987959,0.018474303],"study_design_scores_gemma":[0.000030780993,0.00008923943,0.995972,0.0000585553,0.000026754882,0.00044602444,0.00036421473,0.00013820158,0.0006005997,0.000018487355,0.0022470967,0.000008093421],"about_ca_topic_score_codex":0.035309035,"about_ca_topic_score_gemma":0.026992828,"teacher_disagreement_score":0.035309035,"about_ca_system_score_codex":0.0016511187,"about_ca_system_score_gemma":0.00087593414,"threshold_uncertainty_score":0.07020706},"labels":[],"label_agreement":null},{"id":"W2163128362","doi":"10.1128/jcm.00771-07","title":"Similarity of Bacterial Populations in Saliva from African-American Mother-Child Dyads","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Oral microbiology and periodontitis research","field":"Dentistry","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; York University; University of Michigan","keywords":"Saliva; Temperature gradient gel electrophoresis; Similarity (geometry); Biology; Bacteria; Oral Microbiome; Microbiology; Genetics; Microbiome; 16S ribosomal RNA; Biochemistry","score_opus":0.09744055052097111,"score_gpt":0.44509192833493183,"score_spread":0.3476513778139607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163128362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99962056,0.00012451086,0.000043871965,0.0000065987274,0.0000014058347,0.0000030886645,0.000043339758,0.0000012416557,0.00015525967],"genre_scores_gemma":[0.9989317,0.00028364192,0.00032113696,0.00001820234,0.0000027420376,0.000013703678,0.0001404199,0.0000027913047,0.00028573355],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997415,0.00007256035,0.00001763287,0.000058585523,0.000052474268,0.000057248915],"domain_scores_gemma":[0.9997111,0.00010664869,0.000055294324,0.00001497402,0.000058433976,0.000053623466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030120072,0.00022424824,0.0002787904,0.00079042657,0.000697328,0.0006034298,0.00013912612,0.00025012856,0.0013900633],"category_scores_gemma":[0.0012388517,0.00016157508,0.00010144713,0.00032091633,0.00025472624,0.00016366465,0.00036804608,0.00024705144,0.00023501007],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011745557,0.00017336821,0.7747713,0.000102590195,0.00007794341,0.0014298126,0.018424783,0.000043357057,0.18927146,0.00015802075,0.00016656908,0.014206351],"study_design_scores_gemma":[0.0000078630555,0.00032418687,0.9775645,0.000021904525,0.000056326793,0.0025697523,0.008530698,0.000108082124,0.009977962,0.00004389987,0.0007824435,0.000012364791],"about_ca_topic_score_codex":0.0039307727,"about_ca_topic_score_gemma":0.004803389,"teacher_disagreement_score":0.0039307727,"about_ca_system_score_codex":0.00016288948,"about_ca_system_score_gemma":0.00021236713,"threshold_uncertainty_score":0.007815778},"labels":[],"label_agreement":null},{"id":"W2163164978","doi":"10.1128/jcm.00848-08","title":"Sensitivities of Nasal and Rectal Swabs for Detection of Methicillin-Resistant <i>Staphylococcus aureus</i> Colonization in an Active Surveillance Program","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Staphylococcus aureus; Colonization; Micrococcaceae; Medicine; Microbiology; Methicillin-resistant Staphylococcus aureus; Nose; Staphylococcal infections; Biology; Bacteria; Surgery","score_opus":0.04912693683054787,"score_gpt":0.3730266001089674,"score_spread":0.3238996632784195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163164978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994066,0.0001230533,0.000047770467,0.000018421391,0.0000028890802,0.000004564748,0.00008696418,0.000004179052,0.0003056367],"genre_scores_gemma":[0.99971575,0.000061292674,0.00006134659,0.000015923866,0.0000040823156,0.0000024050796,0.00008539807,8.7354124e-7,0.000053002717],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992711,0.00020136143,0.00009403454,0.00014675295,0.00018577283,0.000101020276],"domain_scores_gemma":[0.99804664,0.0005820793,0.0006263077,0.000066615736,0.00028683152,0.00039154702],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008362835,0.00030898192,0.00028498107,0.00084371655,0.00027300417,0.0005108889,0.00024832122,0.0003785569,0.00078687485],"category_scores_gemma":[0.004552629,0.00034119305,0.00029466563,0.0003680419,0.00032444388,0.0005091201,0.000246621,0.00033599383,0.00018881635],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000099157434,0.00004650945,0.9967417,0.0000080501295,0.000018033283,0.00017657415,0.000106584615,0.000033951706,0.001039507,0.000004588313,0.00008456219,0.001640733],"study_design_scores_gemma":[0.0000053151584,0.0003292222,0.9972842,0.000010056096,0.000024209976,0.0013207502,0.00019333702,0.0002222176,0.0004854748,0.0000060862917,0.00011523408,0.0000040211817],"about_ca_topic_score_codex":0.004934898,"about_ca_topic_score_gemma":0.0051472895,"teacher_disagreement_score":0.004934898,"about_ca_system_score_codex":0.0003009636,"about_ca_system_score_gemma":0.00023669889,"threshold_uncertainty_score":0.009812355},"labels":[],"label_agreement":null},{"id":"W2163230829","doi":"10.1128/jcm.02207-09","title":"Identification of Novel Diagnostic Serum Biomarkers for Chagas' Disease in Asymptomatic Subjects by Mass Spectrometric Profiling","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Asymptomatic; Chagas disease; Apolipoprotein A1; Biomarker; Apolipoprotein B; Biomarker discovery; Trypanosoma cruzi; Western blot; Biology; Lipoprotein; Immunology; Medicine; Internal medicine; Proteomics; Biochemistry; Cholesterol","score_opus":0.03735555562983733,"score_gpt":0.3940909853393835,"score_spread":0.3567354297095462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163230829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990464,0.0017151561,0.0065214257,0.00016736992,0.000022616345,0.0000692809,0.00034307063,0.00013745538,0.00055955094],"genre_scores_gemma":[0.9825104,0.00053142174,0.015718611,0.0002375303,0.000040416846,0.0000623398,0.00050523324,0.000010518196,0.00038362527],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997459,0.000058007805,0.000022709208,0.00006966781,0.000074657306,0.000029053112],"domain_scores_gemma":[0.99963224,0.00012775176,0.00008804584,0.000015264657,0.00009098056,0.000045744062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075457676,0.00058129575,0.0004491484,0.0012445635,0.00021460436,0.00062581856,0.00024607536,0.0005849453,0.0003610799],"category_scores_gemma":[0.0012885119,0.00017732549,0.00019122225,0.0005510049,0.00021860401,0.00023291657,0.0002920172,0.00032904412,0.0002498597],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013157236,0.0003589674,0.3137531,0.0002249059,0.00013622968,0.00041508043,0.00017965947,0.0008109421,0.62921697,0.00026531878,0.0008396618,0.052483495],"study_design_scores_gemma":[0.00015200229,0.0020380921,0.74315506,0.00007046296,0.0002894527,0.003873935,0.00034571995,0.04408429,0.20180851,0.000997416,0.003105583,0.00007952362],"about_ca_topic_score_codex":0.000526778,"about_ca_topic_score_gemma":0.0006513138,"teacher_disagreement_score":0.0012445635,"about_ca_system_score_codex":0.0002196916,"about_ca_system_score_gemma":0.0001761662,"threshold_uncertainty_score":0.00399065},"labels":[],"label_agreement":null},{"id":"W2163244984","doi":"10.1128/jcm.41.1.460-462.2003","title":"Characterization of the First Extended-Spectrum Beta-Lactamase-Producing<i>Salmonella</i>Isolate Identified in Canada","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Health Canada","funders":"","keywords":"Plasmid; Microbiology; Salmonella enterica; Salmonella; Tetracycline; Biology; Serotype; Enterobacteriaceae; Gene; Beta-lactamase; Virology; Bacteria; Antibiotics; Genetics; Escherichia coli","score_opus":0.014249203459123347,"score_gpt":0.26556710905462605,"score_spread":0.2513179055955027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163244984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897681,0.0006726527,0.0008496426,0.00023092287,0.000033671367,0.00010722721,0.0021338288,0.00004795059,0.0061560883],"genre_scores_gemma":[0.990099,0.0006731741,0.0016134391,0.00021518132,0.000011615475,0.000016468099,0.002489918,0.000028508157,0.004852609],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99953675,0.000008913182,0.000017745735,0.00006984134,0.00021686358,0.0001499505],"domain_scores_gemma":[0.99913055,0.000024366735,0.00006109227,0.000014100366,0.00050244055,0.00026748775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011970252,0.0005497657,0.00048403683,0.0012067788,0.002116797,0.0014415777,0.0006656706,0.00046182636,0.00091643597],"category_scores_gemma":[0.0005442532,0.0003377485,0.00043863477,0.0012138365,0.0005377003,0.00020827672,0.0005737891,0.00067068473,0.000345232],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069059123,0.0002431551,0.26753876,0.00033663565,0.00009694634,0.01360891,0.0039867205,0.0006090257,0.6864994,0.00061992457,0.002859936,0.022909928],"study_design_scores_gemma":[0.000054343214,0.00053739356,0.8355685,0.00010183893,0.00015042827,0.009419725,0.0070488113,0.0010867524,0.11803955,0.000074133364,0.027835669,0.00008289299],"about_ca_topic_score_codex":0.9131658,"about_ca_topic_score_gemma":0.94061565,"teacher_disagreement_score":0.08683419,"about_ca_system_score_codex":0.0077217077,"about_ca_system_score_gemma":0.009794716,"threshold_uncertainty_score":0.17469108},"labels":[],"label_agreement":null},{"id":"W2163265714","doi":"10.1128/jcm.02083-12","title":"Multicenter Clinical Evaluation of the Portrait Toxigenic C. difficile Assay for Detection of Toxigenic Clostridium difficile Strains in Clinical Stool Specimens","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Consortium canadien en neurodégénérescence associée au vieillissement","keywords":"Clostridium difficile; Microbiology; C difficile; Clostridiaceae; Gold standard (test); Medicine; Biology; Toxin; Internal medicine; Antibiotics","score_opus":0.13074873674088558,"score_gpt":0.4488709043201436,"score_spread":0.31812216757925804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163265714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995741,0.0007877044,0.0015759093,0.000063688225,0.000025752031,0.00037217006,0.00037395392,0.000056201654,0.0010035922],"genre_scores_gemma":[0.99519205,0.00013055265,0.003279201,0.000089966765,0.000018701812,0.0001705967,0.0007984472,0.000014833611,0.00030566024],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9946701,0.002800185,0.0002875643,0.00095813227,0.001077046,0.00020704303],"domain_scores_gemma":[0.9949752,0.000885924,0.0011086223,0.00047065338,0.0020306038,0.00052902626],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008355885,0.0006217163,0.0005710925,0.00057204964,0.00040372953,0.0006005641,0.00043881522,0.00051042525,0.00073725113],"category_scores_gemma":[0.0077255596,0.00027575693,0.00029322715,0.0003818643,0.00046216307,0.00036413973,0.0004923064,0.00049815705,0.00038741168],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023842817,0.002415345,0.83675545,0.00030218472,0.00051874446,0.00049184513,0.0007234656,0.0012676254,0.08087352,0.00017026268,0.0012176232,0.051421016],"study_design_scores_gemma":[0.0022842735,0.05866735,0.8990815,0.00006624468,0.00033981397,0.0020145825,0.0002629332,0.0042074746,0.028981803,0.000051509403,0.003988101,0.00005441173],"about_ca_topic_score_codex":0.001254371,"about_ca_topic_score_gemma":0.0011394889,"teacher_disagreement_score":0.008355885,"about_ca_system_score_codex":0.0006846286,"about_ca_system_score_gemma":0.0005782576,"threshold_uncertainty_score":0.044190705},"labels":[],"label_agreement":null},{"id":"W2163425788","doi":"10.1128/jcm.00655-07","title":"Monitoring of Polyomavirus BK Virus Viruria and Viremia in Renal Allograft Recipients by Use of a Quantitative Real-Time PCR Assay: One-Year Prospective Study","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; University of Alberta","funders":"Astellas Pharma","keywords":"Viremia; BK virus; Viral load; Urine; Real-time polymerase chain reaction; Medicine; Virology; Coefficient of variation; Kidney; Virus; Internal medicine; Gastroenterology; Biology; Kidney transplantation; Chemistry","score_opus":0.06647256484123593,"score_gpt":0.4021839645480076,"score_spread":0.33571139970677166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163425788","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991304,0.00017213625,0.00043485875,0.000010514487,0.0000051803136,0.000020940372,0.00006320056,0.0000070490223,0.00015570951],"genre_scores_gemma":[0.99913967,0.00010598725,0.00037156252,0.00002835034,0.000012029134,0.000025072684,0.00014636942,0.0000034312338,0.00016761008],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99867356,0.00041126486,0.00010714733,0.0003066567,0.00035264983,0.0001487704],"domain_scores_gemma":[0.9976465,0.00047081674,0.0006673018,0.00020383256,0.0006048709,0.00040666078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025895664,0.00070225605,0.0006960038,0.00086842984,0.0007509939,0.0010981017,0.00038996415,0.0006980035,0.00044496532],"category_scores_gemma":[0.0027701922,0.00048624264,0.0006351561,0.00056213525,0.00059743103,0.0006982673,0.00045433434,0.0010520398,0.0002969916],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005175973,0.0004143804,0.9926891,0.000020252966,0.00006649805,0.00018207569,0.00032162017,0.000093869705,0.0024108095,0.000015394482,0.00004832095,0.003220084],"study_design_scores_gemma":[0.00004102624,0.0037309406,0.99246466,0.000010321065,0.00011369376,0.0009530407,0.00037459985,0.00080369116,0.0010619403,0.000025038857,0.00039698443,0.000024088291],"about_ca_topic_score_codex":0.0019627213,"about_ca_topic_score_gemma":0.0012377582,"teacher_disagreement_score":0.0025895664,"about_ca_system_score_codex":0.00035785025,"about_ca_system_score_gemma":0.0004383267,"threshold_uncertainty_score":0.013695121},"labels":[],"label_agreement":null},{"id":"W2163431297","doi":"10.1128/jcm.01118-06","title":"Determining Human Immunodeficiency Virus Coreceptor Use in a Clinical Setting: Degree of Correlation between Two Phenotypic Assays and a Bioinformatic Model","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"AIDS Vancouver; University of British Columbia","funders":"","keywords":"Concordance; Tropism; Genotype; Biology; Phenotype; Virology; Tissue tropism; Population; Lentivirus; Virus; Computational biology; Genetics; Viral disease; Medicine; Gene","score_opus":0.10198154649005048,"score_gpt":0.38826310432097977,"score_spread":0.2862815578309293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163431297","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9196182,0.00034045262,0.077187054,0.00039263366,0.000036646845,0.000100958096,0.00021017568,0.0005191807,0.0015947908],"genre_scores_gemma":[0.99094814,0.000043102922,0.008519411,0.0000742527,0.0000124005655,0.000026063059,0.00021764054,0.000015569138,0.0001434226],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9937826,0.003367745,0.0003981735,0.0011109946,0.0011071425,0.00023344012],"domain_scores_gemma":[0.9756353,0.019035606,0.0017890977,0.0010669496,0.002166624,0.0003063691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013524671,0.00088914466,0.0008738826,0.0013826591,0.00028171696,0.001722072,0.00061648607,0.0009529677,0.0005547413],"category_scores_gemma":[0.035862364,0.00044455746,0.00054093834,0.0006867874,0.00068888674,0.0009099459,0.0007552577,0.0008629033,0.000396444],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001968481,0.00062019064,0.6882053,0.00020400902,0.000995504,0.00051927427,0.00040795907,0.21732639,0.012012428,0.00082348956,0.00082130916,0.076095685],"study_design_scores_gemma":[0.000028737293,0.00062776427,0.07406456,0.000018324006,0.000083679784,0.00050919654,0.000059092603,0.9201216,0.0031982241,0.0010466895,0.00020344442,0.000038752798],"about_ca_topic_score_codex":0.0015520074,"about_ca_topic_score_gemma":0.0011470366,"teacher_disagreement_score":0.013524671,"about_ca_system_score_codex":0.0005759477,"about_ca_system_score_gemma":0.0006989884,"threshold_uncertainty_score":0.07152611},"labels":[],"label_agreement":null},{"id":"W2163947570","doi":"10.1128/jcm.42.6.2573-2580.2004","title":"Genomic Characterization of an Endemic<i>Mycobacterium tuberculosis</i>Strain: Evolutionary and Epidemiologic Implications","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Genotyping; Biology; Mycobacterium tuberculosis; Restriction fragment length polymorphism; Genetics; Genotype; Tuberculosis; Molecular epidemiology; Population; Gene; Medicine","score_opus":0.06488087181456992,"score_gpt":0.39249085078018464,"score_spread":0.3276099789656147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2163947570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982681,0.00017384534,0.0004053558,0.000048954913,0.0000015370897,0.00001548347,0.0005728182,0.0000038129122,0.0005100356],"genre_scores_gemma":[0.9979346,0.00012294085,0.0007649119,0.00004821946,0.0000048719157,0.0000069056923,0.00092021876,0.0000038831813,0.0001935288],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997528,0.000030815656,0.000012886183,0.000075630705,0.000053560947,0.000074318334],"domain_scores_gemma":[0.99947363,0.00009397721,0.0001544776,0.000043547818,0.00014428643,0.00009008537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024225155,0.0003089024,0.00029852914,0.0009562979,0.00059947616,0.00043433913,0.00036076095,0.0003989325,0.00079997873],"category_scores_gemma":[0.0008347362,0.00009833599,0.00015174337,0.0011600819,0.00045140035,0.00010609003,0.00019020283,0.00032342106,0.00018675016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023906688,0.00007340868,0.85260236,0.00009837125,0.00004739476,0.00094681635,0.0012013383,0.0006831816,0.13050836,0.0002226721,0.00016641403,0.013210564],"study_design_scores_gemma":[0.000004093118,0.00008609552,0.99514514,0.000009138327,0.000014317348,0.00095472345,0.0005637915,0.00047608325,0.0018358252,0.000032327964,0.00087249145,0.0000060652615],"about_ca_topic_score_codex":0.19993359,"about_ca_topic_score_gemma":0.32840937,"teacher_disagreement_score":0.19993359,"about_ca_system_score_codex":0.0015051271,"about_ca_system_score_gemma":0.0014744455,"threshold_uncertainty_score":0.39753968},"labels":[],"label_agreement":null},{"id":"W2164268896","doi":"10.1128/jcm.01447-10","title":"<i>Candida bracarensis</i> Bloodstream Infection in an Immunocompromised Patient","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Candida glabrata; Bloodstream infection; Biology; Opportunistic pathogen; Microbiology; Candida infections; Pathogen; Organism; Opportunistic infection; Internal transcribed spacer; Mycosis; Human pathogen; Virology; Immunology; Candida albicans; Genetics; Viral disease; Gene; Human immunodeficiency virus (HIV); Ribosomal RNA; Virulence","score_opus":0.02664079489891057,"score_gpt":0.37611104690846026,"score_spread":0.3494702520095497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164268896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95617646,0.0034825916,0.00092677947,0.0060331174,0.00038493503,0.00014577432,0.00037035823,0.00018905605,0.032290827],"genre_scores_gemma":[0.9946583,0.00067138684,0.00040961112,0.0020042476,0.0005212918,0.000019442421,0.00015191811,0.000016847014,0.0015470656],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9998037,0.000029681072,0.000023089246,0.00004537474,0.000033931225,0.00006413252],"domain_scores_gemma":[0.9996393,0.00009191313,0.00007233256,0.000015261547,0.000027465861,0.0001537612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013409459,0.0006788009,0.00052980613,0.0006476982,0.0012291026,0.0005837787,0.0003321828,0.0018841928,0.004155454],"category_scores_gemma":[0.0012599126,0.00024224578,0.00030907564,0.0005135072,0.00071426964,0.0005397008,0.00038659855,0.0015135694,0.00087808847],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024037449,0.000116514966,0.08592388,0.00010806675,0.000022793462,0.89592296,0.00039816627,0.0001307559,0.004193393,0.0002954368,0.0058184224,0.00682927],"study_design_scores_gemma":[0.000029383522,0.00025581455,0.059711445,0.00006307252,0.000028451172,0.9340239,0.00024765584,0.00030877138,0.0013003183,0.00020010429,0.0038052963,0.00002578252],"about_ca_topic_score_codex":0.0028776515,"about_ca_topic_score_gemma":0.0030349784,"teacher_disagreement_score":0.004155454,"about_ca_system_score_codex":0.00043111914,"about_ca_system_score_gemma":0.00033897426,"threshold_uncertainty_score":0.0139014125},"labels":[],"label_agreement":null},{"id":"W2164280134","doi":"10.1128/jcm.00377-08","title":"Plastic Polymers for Efficient DNA Microarray Hybridization: Application to Microbiological Diagnostics","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Wilfrid Laurier University; Université Laval","funders":"Génome Québec; Genome Canada","keywords":"Computational biology; DNA; DNA microarray; Nucleic acid thermodynamics; Microarray; DNA–DNA hybridization; Biology; Hybridization probe; Genetics; Base sequence; Gene; Gene expression","score_opus":0.03130502718101386,"score_gpt":0.3329504009256547,"score_spread":0.30164537374464084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164280134","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26344895,0.029085275,0.68734294,0.0016177577,0.0006241278,0.0010104167,0.0013071214,0.002785693,0.012777752],"genre_scores_gemma":[0.48197916,0.018960834,0.48406464,0.0004703977,0.00017017595,0.0009852895,0.0012577449,0.00025094912,0.011860804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999463,0.0001529908,0.000034394205,0.00012031473,0.00018486644,0.000044326876],"domain_scores_gemma":[0.9996258,0.00019553212,0.00007651329,0.000034630448,0.00004076481,0.000026788935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005950233,0.0009696744,0.00033938218,0.0006859442,0.00031900857,0.0004818683,0.0004826431,0.00079322926,0.003010817],"category_scores_gemma":[0.0008643389,0.00048293214,0.00035942352,0.00049053325,0.0003100889,0.0004313415,0.00037001638,0.0006383239,0.001927873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022984656,0.000009809339,0.000056320332,0.00012474779,0.0000047315816,0.000026679376,0.000008851357,0.0001273844,0.9913293,0.00018893766,0.00009137813,0.008008842],"study_design_scores_gemma":[0.000006230963,0.00008390809,0.0005185111,0.000015718302,0.000010248413,0.00022537567,0.0000073415467,0.00074866175,0.991735,0.00012434514,0.0065146983,0.00000987008],"about_ca_topic_score_codex":0.0002245236,"about_ca_topic_score_gemma":0.00033978233,"teacher_disagreement_score":0.003010817,"about_ca_system_score_codex":0.00030768206,"about_ca_system_score_gemma":0.0002627614,"threshold_uncertainty_score":0.010072172},"labels":[],"label_agreement":null},{"id":"W2164379895","doi":"10.1128/jcm.02012-14","title":"First Report of Westerdykella dispersa as a Cause of an Angioinvasive Fungal Infection in a Neutropenic Host","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Johns Hopkins University","keywords":"Host (biology); Neutropenia; Leukopenia; Intensive care medicine; Immunology; Biology; Medicine; Microbiology; Internal medicine; Ecology; Chemotherapy","score_opus":0.038720472128674875,"score_gpt":0.3802868910774003,"score_spread":0.34156641894872547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164379895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9506363,0.01099924,0.0065152715,0.004190999,0.0013131677,0.00043726343,0.00087794167,0.0002880861,0.024741754],"genre_scores_gemma":[0.9892278,0.0037438239,0.0021670999,0.0014516104,0.0010505702,0.00004026944,0.00025269532,0.000038610982,0.0020274774],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9992823,0.00010207029,0.0000895315,0.00015511614,0.00012635399,0.00024458248],"domain_scores_gemma":[0.9972481,0.00082094735,0.00065232936,0.00032163263,0.00023272642,0.0007241809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003936191,0.0010858171,0.00079732575,0.0010175519,0.0014142698,0.0015211811,0.0008929962,0.0034845613,0.0032746023],"category_scores_gemma":[0.0027722637,0.0007531167,0.0006850065,0.000454948,0.0009805734,0.0015431893,0.0013315756,0.0025789237,0.0013418569],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019261369,0.00029626305,0.036744054,0.00017825683,0.00003135971,0.94562507,0.00090952695,0.00009731406,0.0034858184,0.0007314199,0.0034993999,0.008208894],"study_design_scores_gemma":[0.000033103435,0.00041789238,0.01512817,0.000090558686,0.00003497287,0.9737664,0.0004914419,0.00016976355,0.0015311848,0.00016440196,0.008147512,0.00002460658],"about_ca_topic_score_codex":0.0018225497,"about_ca_topic_score_gemma":0.0018798286,"teacher_disagreement_score":0.0034845613,"about_ca_system_score_codex":0.0006636885,"about_ca_system_score_gemma":0.0007486562,"threshold_uncertainty_score":0.010954618},"labels":[],"label_agreement":null},{"id":"W2164435406","doi":"10.1128/jcm.01781-07","title":"In Vitro Bactericidal Activity of <i>Streptococcus pneumoniae</i> and Bactericidal Susceptibility of <i>Staphylococcus aureus</i> Strains Isolated from Cocolonized versus Noncocolonized Children","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Streptococcus pneumoniae; Staphylococcus aureus; Microbiology; In vitro; Biology; Micrococcaceae; Streptococcaceae; Bacteria; Antibacterial agent; Antibiotics","score_opus":0.02527648302218895,"score_gpt":0.3492525389291944,"score_spread":0.32397605590700546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164435406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838984,0.0010088722,0.000073263225,0.000019323681,0.000009931357,0.000005685238,0.00013777749,0.0000025518316,0.0003529338],"genre_scores_gemma":[0.9988808,0.0003447134,0.00020855221,0.000025001253,0.000011137109,0.000007254619,0.00030882572,0.0000016415614,0.00021201328],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993864,0.00020350258,0.00006388682,0.00007578939,0.0001535298,0.00011686706],"domain_scores_gemma":[0.9988354,0.00048658848,0.00028006907,0.00007108726,0.00013376054,0.00019314328],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037922763,0.0002824886,0.00026268375,0.00036492458,0.00011009608,0.00043240967,0.00016208846,0.00035766707,0.0018270956],"category_scores_gemma":[0.0015239249,0.00014377237,0.00026035568,0.00020439968,0.00030086437,0.0002206522,0.00015382312,0.00046039475,0.00016777635],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006276128,0.000756982,0.14560717,0.0004252195,0.00019161712,0.00032933455,0.0004504448,0.00039026065,0.8337273,0.00027600364,0.00024117726,0.011328367],"study_design_scores_gemma":[0.00017547431,0.017253002,0.57382363,0.00005844446,0.00020778498,0.0024525996,0.00051418424,0.0007991512,0.40302968,0.000097693555,0.0015648293,0.000023542843],"about_ca_topic_score_codex":0.0014283778,"about_ca_topic_score_gemma":0.0013307572,"teacher_disagreement_score":0.0018270956,"about_ca_system_score_codex":0.0003072939,"about_ca_system_score_gemma":0.00024297395,"threshold_uncertainty_score":0.006112218},"labels":[],"label_agreement":null},{"id":"W2164601804","doi":"10.1128/jcm.01596-07","title":"Methicillin-Resistant <i>Staphylococcus aureus</i> Nasal Carriage among Injection Drug Users: Six Years Later","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Vancouver Coastal Health; Vancouver General Hospital; University of British Columbia","funders":"Vancouver Coastal Health Research Institute","keywords":"Staphylococcus aureus; Microbiology; Clindamycin; Pulsed-field gel electrophoresis; Methicillin-resistant Staphylococcus aureus; Medicine; Carriage; Colonization; Mupirocin; Population; Antibiotics; Biology; Bacteria; Genotype; Pathology","score_opus":0.03018632144266852,"score_gpt":0.35299478639356546,"score_spread":0.32280846495089693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164601804","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769396,0.00040109857,0.00006135111,0.00016400943,0.000016827253,0.000016247188,0.00032886252,0.0000055911105,0.0013120492],"genre_scores_gemma":[0.9983884,0.0002817527,0.000050034916,0.00009075564,0.000011725475,0.0000053946724,0.00024245371,0.0000015853141,0.00092770037],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99963844,0.000044485136,0.000023883977,0.00006745377,0.00011376362,0.00011200693],"domain_scores_gemma":[0.999092,0.00007694905,0.0001694043,0.00002888073,0.0003699569,0.0002629589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003109548,0.00015108139,0.00022990708,0.0007513407,0.0005746347,0.0008118528,0.00023770757,0.00058998994,0.0012283126],"category_scores_gemma":[0.0012476976,0.0001606478,0.00027762965,0.00079724943,0.00018698712,0.00046483052,0.00037604343,0.0005984346,0.00031695713],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006917627,0.00006873239,0.9900148,0.000025493737,0.00001455196,0.0005528927,0.0009961431,0.000013308001,0.0006671026,0.000013015898,0.0001928477,0.007371889],"study_design_scores_gemma":[0.000002266907,0.00006263331,0.99804974,0.000013236839,0.000010811075,0.00032416466,0.00074478384,0.000050143222,0.00014147382,0.000004140822,0.0005929096,0.0000037357195],"about_ca_topic_score_codex":0.13528243,"about_ca_topic_score_gemma":0.12875605,"teacher_disagreement_score":0.13528243,"about_ca_system_score_codex":0.0008505175,"about_ca_system_score_gemma":0.00058986957,"threshold_uncertainty_score":0.26898998},"labels":[],"label_agreement":null},{"id":"W2164743530","doi":"10.1128/jcm.05296-11","title":"Canada's First Case of a Multidrug-Resistant Corynebacterium diphtheriae Strain, Isolated from a Skin Abscess","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; University of British Columbia; BC Centre for Disease Control; Provincial Health Services Authority; Public Health Agency of Canada; University of Alberta","funders":"","keywords":"Corynebacterium diphtheriae; Microbiology; Abscess; Strain (injury); Corynebacterium; Biology; Medicine; Virology; Bacteria; Diphtheria; Genetics; Anatomy; Vaccination","score_opus":0.026171655990708673,"score_gpt":0.2806592185979686,"score_spread":0.2544875626072599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164743530","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90294546,0.004304933,0.001408621,0.01731687,0.0013246286,0.00033145872,0.0014618983,0.00017139007,0.07073479],"genre_scores_gemma":[0.98567986,0.0016828973,0.00105511,0.0042525968,0.00042768838,0.00001814318,0.00023246805,0.000044755427,0.0066064205],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9996406,0.000025972786,0.00002341128,0.00006173942,0.00007606444,0.00017233734],"domain_scores_gemma":[0.99911624,0.00016933055,0.00009654515,0.00004655809,0.00018625543,0.0003850079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013242567,0.0010069588,0.00034511054,0.0011706271,0.0045162584,0.0013404423,0.00076441764,0.0032123683,0.0038702881],"category_scores_gemma":[0.0028338875,0.0006024506,0.00037998162,0.0010390473,0.0010800373,0.00072893663,0.0007972961,0.0021566676,0.00058709877],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006554244,0.00007568468,0.016287643,0.00006827259,0.000015544401,0.97280383,0.0008999525,0.0000848424,0.0015291387,0.00042868295,0.0043471796,0.0033937753],"study_design_scores_gemma":[0.000048763854,0.0001315571,0.027568847,0.000067671885,0.00003068396,0.9506298,0.0018772952,0.00026649373,0.00095292286,0.00036390894,0.01802304,0.000039153198],"about_ca_topic_score_codex":0.25321114,"about_ca_topic_score_gemma":0.4719388,"teacher_disagreement_score":0.74678886,"about_ca_system_score_codex":0.0034842587,"about_ca_system_score_gemma":0.0047260895,"threshold_uncertainty_score":0.5034746},"labels":[],"label_agreement":null},{"id":"W2165440232","doi":"10.1128/jcm.01515-06","title":"Simultaneous Quantification of Epstein-Barr Virus, Cytomegalovirus, and Human Herpesvirus 6 DNA in Samples from Transplant Recipients by Multiplex Real-Time PCR Assay","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Multiplex; Whole blood; Virology; Cytomegalovirus; Herpesviridae; Viral load; Real-time polymerase chain reaction; Betaherpesvirinae; Multiplex polymerase chain reaction; Human cytomegalovirus; Biology; Virus; Polymerase chain reaction; Human herpesvirus 6; DNA; Epstein–Barr virus; Molecular biology; Asymptomatic; Viral disease; Immunology; Medicine; Pathology; Gene","score_opus":0.05331870902074177,"score_gpt":0.3758129090020501,"score_spread":0.32249419998130835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165440232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9257264,0.0060582934,0.06497346,0.00008682124,0.00016423786,0.0003459396,0.001199314,0.00048582364,0.00095977145],"genre_scores_gemma":[0.8621288,0.0030212505,0.12985693,0.00023247302,0.00015527642,0.0010133191,0.0017238116,0.000054554006,0.0018135278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997965,0.0004162982,0.0002153617,0.00062903645,0.0006162674,0.00015816207],"domain_scores_gemma":[0.9989926,0.00039215907,0.00026133508,0.00008083686,0.00020333764,0.000069831556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001952021,0.00091594533,0.0009314021,0.0020129862,0.00026887684,0.0010750679,0.0004922689,0.00072277646,0.0006512931],"category_scores_gemma":[0.0020951678,0.00056638423,0.0004807633,0.0011858812,0.0003926988,0.0006478158,0.00037724338,0.0006430047,0.000313947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013392488,0.00035809237,0.06212021,0.00040003963,0.00015536677,0.0005059112,0.00089624623,0.0010674103,0.89043015,0.00018525864,0.00027272268,0.042269267],"study_design_scores_gemma":[0.00014454825,0.0023390416,0.09624473,0.00012524554,0.0005745438,0.0048150346,0.00054756517,0.035474107,0.8518538,0.0006806155,0.007030538,0.00017027659],"about_ca_topic_score_codex":0.0003113173,"about_ca_topic_score_gemma":0.00040674873,"teacher_disagreement_score":0.0020129862,"about_ca_system_score_codex":0.00023220768,"about_ca_system_score_gemma":0.00023604058,"threshold_uncertainty_score":0.010323405},"labels":[],"label_agreement":null},{"id":"W2165658994","doi":"10.1128/jcm.38.6.2297-2301.2000","title":"Molecular Characterization of <i>Campylobacter jejuni</i> from Patients with Guillain-Barre and Miller Fisher Syndromes","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Peripheral Neuropathies and Disorders","field":"Medicine","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Serotype; Campylobacter jejuni; Biology; Sialic acid; Genotype; Microbiology; Guillain-Barre syndrome; Molecular mimicry; Campylobacter; Virology; Gene; Genetics; Bacteria; Antibody; Immunology","score_opus":0.010922516821678559,"score_gpt":0.2633992257973053,"score_spread":0.25247670897562674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165658994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99921775,0.00017675267,0.000069282265,0.00006359583,0.00000943274,0.000008966179,0.00006897301,0.0000038368344,0.00038142892],"genre_scores_gemma":[0.9993119,0.00011232071,0.000127806,0.000094640185,0.00002064861,0.000006836999,0.00018352638,0.000003399648,0.00013898913],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997254,0.000040023897,0.000035818317,0.00006772812,0.00004978575,0.00008114736],"domain_scores_gemma":[0.99954283,0.00009286088,0.0001267546,0.000019241192,0.00007307526,0.00014526487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001715277,0.0005594533,0.00038989776,0.0012176174,0.0005033102,0.00052674615,0.0002831589,0.00075325876,0.00092012295],"category_scores_gemma":[0.0018058581,0.00031910808,0.00028878203,0.00054668565,0.00044953907,0.00038188978,0.0002429992,0.00045579943,0.00023349066],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005575367,0.00013621367,0.9597944,0.00007054357,0.000048229922,0.01421287,0.00076368294,0.00008874546,0.01757229,0.00007444422,0.00051133713,0.0061697364],"study_design_scores_gemma":[0.000039712602,0.00056678517,0.9669644,0.00003295196,0.000045141387,0.028354062,0.0007962634,0.00032159922,0.0015590199,0.000062049396,0.0012406781,0.000017262044],"about_ca_topic_score_codex":0.0039023405,"about_ca_topic_score_gemma":0.001550089,"teacher_disagreement_score":0.0039023405,"about_ca_system_score_codex":0.0003462972,"about_ca_system_score_gemma":0.0001948683,"threshold_uncertainty_score":0.007759273},"labels":[],"label_agreement":null},{"id":"W2165687786","doi":"10.1128/jcm.00120-10","title":"Simultaneous Analysis of Multiple Enzymes Increases Accuracy of Pulsed-Field Gel Electrophoresis in Assigning Genetic Relationships among Homogeneous <i>Salmonella</i> Strains","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Subtyping; Salmonella enterica; Pulsed-field gel electrophoresis; Serotype; Biology; Salmonella; Microbiology; Restriction enzyme; Salmonella enteritidis; Typing; Genetics; Genotype; Bacteria; Gene","score_opus":0.03778092394463714,"score_gpt":0.30290274284063834,"score_spread":0.26512181889600117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165687786","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92388177,0.0017332175,0.0725214,0.00012427752,0.000027110957,0.00003558594,0.00016429402,0.0004021856,0.0011102286],"genre_scores_gemma":[0.916976,0.00080494373,0.08139817,0.00003503593,0.000012599613,0.000022211965,0.0002761098,0.000057378995,0.0004176551],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99565166,0.001681385,0.0003170922,0.0011361067,0.00088815193,0.0003256186],"domain_scores_gemma":[0.9916284,0.0048116446,0.0012011136,0.0009853776,0.000965311,0.00040812473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032061632,0.0008689021,0.00092747196,0.0016064438,0.00024076588,0.001426027,0.0004432605,0.0008031601,0.00037417925],"category_scores_gemma":[0.008912984,0.0005550547,0.00045896278,0.0009887019,0.00066204375,0.0010075235,0.0010657604,0.0011542701,0.00042783207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011480028,0.00028629976,0.08151875,0.00022334229,0.00012960906,0.00010565106,0.000298456,0.0038399023,0.8273942,0.00019366304,0.00014093464,0.08472115],"study_design_scores_gemma":[0.000031749565,0.001383147,0.22386777,0.00013120694,0.0003143216,0.00077399064,0.0002165214,0.08098771,0.6887605,0.00051163754,0.0029186208,0.00010278858],"about_ca_topic_score_codex":0.0010225547,"about_ca_topic_score_gemma":0.0016284658,"teacher_disagreement_score":0.0032061632,"about_ca_system_score_codex":0.00025120258,"about_ca_system_score_gemma":0.00045095198,"threshold_uncertainty_score":0.016956031},"labels":[],"label_agreement":null},{"id":"W2165777597","doi":"10.1128/jcm.02582-10","title":"Comparison of Two Multiplex Methods for Detection of Respiratory Viruses: FilmArray RP and xTAG RVP","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Florida","keywords":"Human metapneumovirus; Virology; Multiplex; Multiplex polymerase chain reaction; Respiratory system; Virus; Medicine; Microbiology; Respiratory tract infections; Biology; Polymerase chain reaction; Bioinformatics; Internal medicine; Gene","score_opus":0.4630469787794102,"score_gpt":0.6138516097070277,"score_spread":0.15080463092761748,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165777597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6285246,0.033089858,0.323231,0.0007156775,0.0014842836,0.0012595349,0.0029808013,0.002434544,0.0062797302],"genre_scores_gemma":[0.439513,0.012346867,0.5326748,0.00063062704,0.0006137027,0.0017557525,0.0035345107,0.00037323867,0.00855758],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9868837,0.0038859828,0.00094819866,0.0032921839,0.0044983607,0.0004915335],"domain_scores_gemma":[0.9922388,0.0043375837,0.0011645502,0.0005539427,0.0014561351,0.00024914206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008224137,0.0027365256,0.0014614473,0.0027558422,0.00038499758,0.0019122653,0.0020657012,0.0015477926,0.0017705457],"category_scores_gemma":[0.008599752,0.001515365,0.0008755002,0.0017171851,0.0007282978,0.0016279334,0.0013284284,0.001293721,0.0012304162],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046841577,0.00051927875,0.021346455,0.0018516093,0.0008065848,0.00017527296,0.00062789454,0.0017604047,0.8727166,0.0006142336,0.0013082391,0.09358929],"study_design_scores_gemma":[0.00030468893,0.009764799,0.061555963,0.0002746435,0.0012734777,0.002802499,0.00041650268,0.0235574,0.88852096,0.00045686978,0.0108002545,0.00027192806],"about_ca_topic_score_codex":0.0012843461,"about_ca_topic_score_gemma":0.0018274281,"teacher_disagreement_score":0.008224137,"about_ca_system_score_codex":0.00062553416,"about_ca_system_score_gemma":0.00043199497,"threshold_uncertainty_score":0.043493927},"labels":[],"label_agreement":null},{"id":"W2165826165","doi":"10.1128/jcm.01831-06","title":"<i>Catabacter hongkongensis</i>gen. nov., sp. nov., Isolated from Blood Cultures of Patients from Hong Kong and Canada","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"Centers for Disease Control and Prevention; University of Hong Kong","keywords":"Microbiology; Biology; MacConkey agar; Bacteremia; Cefotaxime; 16S ribosomal RNA; Blood culture; Chocolate agar; Agar plate; Bacteria; Antibiotics","score_opus":0.010509706250541925,"score_gpt":0.2622756155175841,"score_spread":0.2517659092670422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165826165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98608774,0.002566322,0.0005233938,0.00039312252,0.00019895271,0.0002151444,0.00424376,0.000053443116,0.00571817],"genre_scores_gemma":[0.9883079,0.0014497399,0.0016418159,0.00061299594,0.000045851128,0.00005081253,0.0045327623,0.000018348263,0.003339785],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997402,0.00000958261,0.000040667423,0.000070848924,0.000048935595,0.000089740555],"domain_scores_gemma":[0.9995602,0.000043156328,0.00008992733,0.000023288776,0.00019073526,0.00009258084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009879372,0.00067877566,0.0002867332,0.00057031785,0.0010729106,0.00082027004,0.00031604766,0.0003615344,0.0014079537],"category_scores_gemma":[0.0005131603,0.00021316929,0.00027470023,0.0012901949,0.00043420648,0.00026340652,0.00042010678,0.0003807311,0.0004247696],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013598625,0.00021912549,0.737598,0.0014901379,0.00023266248,0.01811938,0.0056710355,0.0012282974,0.15526228,0.00069958315,0.013968912,0.0641506],"study_design_scores_gemma":[0.000080959166,0.0003802255,0.9164896,0.00026416866,0.00019918583,0.014601071,0.007808953,0.0006762924,0.021472808,0.00011420938,0.037843194,0.00006934698],"about_ca_topic_score_codex":0.553122,"about_ca_topic_score_gemma":0.5391266,"teacher_disagreement_score":0.44687802,"about_ca_system_score_codex":0.0021242434,"about_ca_system_score_gemma":0.0033700638,"threshold_uncertainty_score":0.89901954},"labels":[],"label_agreement":null},{"id":"W2165831373","doi":"10.1128/jcm.02659-13","title":"Emergence of an Oseltamivir-Resistant Influenza A/H3N2 Virus in an Elderly Patient Receiving a Suboptimal Dose of Antiviral Prophylaxis","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Oseltamivir; Neuraminidase; Neuraminidase inhibitor; Titer; Virus; Virology; Medicine; Orthomyxoviridae; Influenza A virus; Zanamivir; Immunology; Biology; Microbiology; Internal medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.09998585120240915,"score_gpt":0.43648026010500207,"score_spread":0.3364944089025929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165831373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982868,0.00018258818,0.00034282854,0.00022845822,0.000029050105,0.000025384317,0.000065241984,0.000011687196,0.00082794455],"genre_scores_gemma":[0.99921,0.00008777194,0.00025108634,0.00020163564,0.000036657595,0.0000034484162,0.000033941036,0.0000029665412,0.00017235367],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9997645,0.000031621348,0.000033012646,0.00004822709,0.000053916472,0.000068788395],"domain_scores_gemma":[0.99945027,0.00013461646,0.00010063066,0.000036525238,0.00008025639,0.00019755171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019932239,0.00055117003,0.00059811614,0.0004216,0.0010240278,0.00056837976,0.00028368694,0.0010159706,0.00075501157],"category_scores_gemma":[0.0015032628,0.00030200384,0.0005662353,0.00025589077,0.00038475636,0.00038746724,0.0003132319,0.0010868614,0.0002661171],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013722887,0.00047937478,0.40855005,0.00008709212,0.00008941639,0.53959024,0.0018814248,0.0005777995,0.03527716,0.0004623487,0.0009191947,0.010713642],"study_design_scores_gemma":[0.00010580266,0.00477289,0.28677365,0.000060354712,0.00020133652,0.682215,0.002006367,0.004727696,0.016376838,0.0003336165,0.0023490018,0.00007757907],"about_ca_topic_score_codex":0.003293826,"about_ca_topic_score_gemma":0.0027494845,"teacher_disagreement_score":0.003293826,"about_ca_system_score_codex":0.00040950946,"about_ca_system_score_gemma":0.00039581943,"threshold_uncertainty_score":0.0065492988},"labels":[],"label_agreement":null},{"id":"W2165927091","doi":"10.1128/jcm.38.11.4058-4065.2000","title":"Evaluation of Fluorescence-Based Amplified Fragment Length Polymorphism Analysis for Molecular Typing in Hospital Epidemiology: Comparison with Pulsed-Field Gel Electrophoresis for Typing Strains of Vancomycin-Resistant <i>Enterococcus faecium</i>","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Health","funders":"","keywords":"Pulsed-field gel electrophoresis; Biology; Typing; Enterococcus faecium; Gel electrophoresis; Restriction enzyme; DNA profiling; Molecular epidemiology; Molecular biology; Genetics; Genotype; DNA; Bacteria; Gene","score_opus":0.06661072444314055,"score_gpt":0.3946075303867709,"score_spread":0.32799680594363034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165927091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92351896,0.003166408,0.071404085,0.00033940436,0.000067168905,0.00016863279,0.00022557816,0.00016146239,0.00094833475],"genre_scores_gemma":[0.8710269,0.0008096427,0.12723249,0.00009611229,0.00003507917,0.00012791436,0.00033256138,0.000034789686,0.00030451815],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9902048,0.00645483,0.00044903337,0.0008661988,0.001766139,0.0002589658],"domain_scores_gemma":[0.98947,0.007236962,0.0010483431,0.0004065732,0.0013406927,0.00049737014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077197356,0.00066857773,0.0004901343,0.0018009131,0.00029349036,0.0010831842,0.00075655646,0.001093817,0.00038974965],"category_scores_gemma":[0.017562982,0.00022398989,0.0003022556,0.0010921457,0.0004819404,0.00092428253,0.00046005036,0.00043968533,0.0002493459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050928616,0.0017564199,0.18472043,0.0007386402,0.00031885772,0.0004314659,0.00068308815,0.0057743317,0.50252575,0.00080615014,0.00058527314,0.2965666],"study_design_scores_gemma":[0.0003950288,0.015631482,0.44131973,0.00024022626,0.0005070553,0.007653643,0.0007199153,0.10460412,0.4213462,0.0012590343,0.0059965975,0.00032696736],"about_ca_topic_score_codex":0.0013027771,"about_ca_topic_score_gemma":0.0017939814,"teacher_disagreement_score":0.0077197356,"about_ca_system_score_codex":0.00049806474,"about_ca_system_score_gemma":0.0005440201,"threshold_uncertainty_score":0.04082638},"labels":[],"label_agreement":null},{"id":"W2166008660","doi":"10.1128/jcm.38.6.2366-2368.2000","title":"Epidemiologic Subtyping of <i>Escherichia coli</i> Serogroup O157 Strains Isolated in Ontario by Phage Typing and Pulsed-Field Gel Electrophoresis","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Ministry of Health and Long Term Care","funders":"","keywords":"Subtyping; Pulsed-field gel electrophoresis; Typing; Phage typing; Outbreak; Biology; Microbiology; DNA profiling; Virology; Molecular epidemiology; Escherichia coli; Genotype; Genetics; DNA; Gene","score_opus":0.025654483204381212,"score_gpt":0.32702645919216156,"score_spread":0.3013719759877803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166008660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981451,0.00022582829,0.00042267842,0.000045183835,0.0000030948654,0.000036577523,0.0001872993,0.0000070368615,0.0009272925],"genre_scores_gemma":[0.9979837,0.00031000926,0.0009398099,0.000033196247,0.0000035237765,0.000016238846,0.00029565752,0.0000038678163,0.0004139131],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99933547,0.00005299853,0.000039256276,0.00008143357,0.0003470929,0.00014362349],"domain_scores_gemma":[0.998779,0.00012848298,0.000319615,0.000031566324,0.00055195775,0.0001894247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037242638,0.0003329291,0.00025042397,0.0009605322,0.0010389047,0.00076299015,0.00026113927,0.00019650652,0.00047135673],"category_scores_gemma":[0.0015579069,0.0003053833,0.00025505724,0.0009803828,0.00065948046,0.00020831844,0.0004742357,0.00021184962,0.00008703141],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002652868,0.000031114225,0.9614727,0.00009502982,0.000022311784,0.00036576565,0.0016819781,0.00015977611,0.026468413,0.00004227815,0.00019083126,0.0092045],"study_design_scores_gemma":[0.0000056487247,0.0000938837,0.9964083,0.000016070664,0.000015610765,0.00024031132,0.00067450124,0.00019680697,0.0016399056,0.000009177919,0.0006921886,0.0000075498237],"about_ca_topic_score_codex":0.83381075,"about_ca_topic_score_gemma":0.8919065,"teacher_disagreement_score":0.16618925,"about_ca_system_score_codex":0.005525066,"about_ca_system_score_gemma":0.007369142,"threshold_uncertainty_score":0.33433592},"labels":[],"label_agreement":null},{"id":"W2166196825","doi":"10.1128/jcm.02262-14","title":"Serogroup-Specific Bacterial Engineered Glycoproteins as Novel Antigenic Targets for Diagnosis of Shiga Toxin-Producing-Escherichia coli-Associated Hemolytic-Uremic Syndrome","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Serotype; Microbiology; Escherichia coli; Antigen; Serology; Shiga toxin; Biology; Virology; Antibody; Immunology; Gene","score_opus":0.030130453958623005,"score_gpt":0.3222792360137008,"score_spread":0.29214878205507777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166196825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883338,0.00068527705,0.010386016,0.000045966255,0.00001609077,0.00005872197,0.000074963566,0.000035333203,0.0003636797],"genre_scores_gemma":[0.9825151,0.0006558766,0.016102565,0.000051323306,0.000007773632,0.000020201283,0.00025009847,0.000011973968,0.00038512345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998838,0.00004109204,0.000008714982,0.000016778618,0.000030213901,0.000019444355],"domain_scores_gemma":[0.9999201,0.000015984398,0.000024848187,0.000008742187,0.000014199202,0.000016151638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021364479,0.00047827084,0.00021814823,0.00016620605,0.000060506805,0.00020350204,0.00014657462,0.0003597929,0.00020092043],"category_scores_gemma":[0.00020676048,0.00009647961,0.00022240597,0.00014624403,0.00014209219,0.00015716269,0.00023973189,0.00033676717,0.00012345695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031860367,0.00002191977,0.00030814917,0.00001742419,0.0000031657635,0.000034383724,0.00000875861,0.000059011087,0.9986469,0.000023664941,0.0000064094884,0.0008383013],"study_design_scores_gemma":[0.000012888314,0.00082636665,0.006468997,0.000011185927,0.00003774718,0.00056383654,0.00003557173,0.0030889725,0.9877166,0.000045054494,0.0011859568,0.000006787423],"about_ca_topic_score_codex":0.0001752302,"about_ca_topic_score_gemma":0.0002511547,"teacher_disagreement_score":0.00047827084,"about_ca_system_score_codex":0.00010093051,"about_ca_system_score_gemma":0.000090736794,"threshold_uncertainty_score":0.0011298656},"labels":[],"label_agreement":null},{"id":"W2166210932","doi":"10.1128/jcm.44.4.1578-1580.2006","title":"A 24-Hour Screening Protocol for Identification of Vancomycin-Resistant <i>Enterococcus faecium</i>","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Enterococcus faecium; Enterococcus; Vancomycin; Microbiology; Identification (biology); Vancomycin-resistant Enterococcus; Medicine; Antibacterial agent; Biology; Antibiotics; Bacteria; Staphylococcus aureus; Genetics","score_opus":0.06728300360473491,"score_gpt":0.41642321933863075,"score_spread":0.34914021573389586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166210932","genre_codex":"methods","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.24143136,0.0031729422,0.6652584,0.0012980013,0.0016378062,0.0636899,0.004411027,0.004963778,0.014136786],"genre_scores_gemma":[0.15772295,0.0025316172,0.7586683,0.0021600646,0.00053474074,0.059826955,0.008429518,0.0003709718,0.009754996],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966642,0.0009574907,0.0004526061,0.00047478513,0.0012004655,0.00025049344],"domain_scores_gemma":[0.9978479,0.0004981651,0.0003453192,0.00034964588,0.00074064516,0.00021831985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022043912,0.0014110531,0.0017629756,0.0013938799,0.00089275936,0.0007433638,0.0016476961,0.0013843325,0.0043438687],"category_scores_gemma":[0.003163091,0.0007688558,0.00081214565,0.00077845383,0.0005931485,0.00060076994,0.0010379312,0.001788609,0.005282769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001736519,0.002931265,0.00865734,0.0006628703,0.00009855187,0.001109431,0.00040461868,0.00077923934,0.88495064,0.00043450898,0.0105642285,0.0876708],"study_design_scores_gemma":[0.0011182494,0.029071258,0.14894375,0.00071741734,0.0005599114,0.011439989,0.0008797696,0.015714878,0.6737235,0.0011147101,0.115666434,0.0010500763],"about_ca_topic_score_codex":0.0007488082,"about_ca_topic_score_gemma":0.0014660263,"teacher_disagreement_score":0.0043438687,"about_ca_system_score_codex":0.0003126665,"about_ca_system_score_gemma":0.0011679856,"threshold_uncertainty_score":0.014531672},"labels":[],"label_agreement":null},{"id":"W2166337293","doi":"10.1128/jcm.02446-10","title":"Comparison of Strain Typing Results for Clostridium difficile Isolates from North America","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Department of Veterans Affairs","keywords":"Clostridium difficile; Microbiology; Strain (injury); Clostridiaceae; Typing; Clostridium; Biology; Clostridiales; Clostridium Infections; C difficile; Virology; Bacteria; Genetics; Antibiotics","score_opus":0.1628536764808116,"score_gpt":0.4266670560027519,"score_spread":0.2638133795219403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166337293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959157,0.00053613144,0.00024414284,0.00006218033,0.000015229806,0.000011983495,0.0004756479,0.000015169577,0.0027238997],"genre_scores_gemma":[0.9965837,0.00042834223,0.0008139119,0.00015054306,0.00001388692,0.000018242388,0.0016407975,0.000016490607,0.00033408197],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985214,0.0003891354,0.00015871592,0.00024248323,0.00041028048,0.0002780108],"domain_scores_gemma":[0.9952793,0.0010403483,0.00065021904,0.0002608697,0.0023903449,0.00037888548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012465394,0.00023148947,0.00028556993,0.0029487873,0.00054593815,0.00061667763,0.00025407353,0.00031505883,0.0007144487],"category_scores_gemma":[0.0051557184,0.00019589647,0.00023398719,0.0015038162,0.00025394058,0.00034645386,0.0005374495,0.00022693946,0.00026883555],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000469172,0.00005476988,0.9630895,0.00006400708,0.00013568583,0.00020355982,0.0012162364,0.00015246056,0.008512769,0.000071778246,0.0009120308,0.025117937],"study_design_scores_gemma":[0.000007886692,0.00007260773,0.9970253,0.00002113394,0.000030071007,0.00035217495,0.0005623163,0.00012740184,0.00074468914,0.000023321501,0.0010269352,0.00000624758],"about_ca_topic_score_codex":0.041941855,"about_ca_topic_score_gemma":0.08049928,"teacher_disagreement_score":0.041941855,"about_ca_system_score_codex":0.000934784,"about_ca_system_score_gemma":0.0005380007,"threshold_uncertainty_score":0.08339542},"labels":[],"label_agreement":null},{"id":"W2166377147","doi":"10.1128/jcm.41.12.5537-5540.2003","title":"<i>Listeria monocytogenes</i> Serotype Identification by PCR","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Food and Drug Administration; Agricultural Research Service; Health Canada; Centers for Disease Control and Prevention; Washington State University; U.S. Department of Agriculture","keywords":"Serotype; Subtyping; Listeria monocytogenes; Biology; Primer (cosmetics); Microbiology; Polymerase chain reaction; Virology; Bacteria; Genetics; Gene; Chemistry","score_opus":0.09775846949199972,"score_gpt":0.3935763417406818,"score_spread":0.29581787224868206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166377147","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36511487,0.012975853,0.49502093,0.0025728347,0.0018017648,0.0020794144,0.026956981,0.010858843,0.082618535],"genre_scores_gemma":[0.37269735,0.011186151,0.5167183,0.0026129205,0.00037312688,0.0022720615,0.040737133,0.0014409579,0.051961973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889344,0.0002553012,0.00012995412,0.00030865535,0.00028844262,0.00012433705],"domain_scores_gemma":[0.9993622,0.0001417995,0.00010533303,0.000087189015,0.00026796755,0.000035591776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048389632,0.00080517464,0.00077739265,0.00089876703,0.0003055082,0.000644678,0.0004788294,0.000388459,0.0075192014],"category_scores_gemma":[0.0012860701,0.00038323915,0.00041999866,0.00063388405,0.00047761382,0.0002857764,0.0004966739,0.00067737297,0.006400846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033403144,0.000058364694,0.0026985863,0.0006650723,0.000012205493,0.00031270072,0.000120036035,0.00025429614,0.95086825,0.0009754455,0.008619876,0.03508109],"study_design_scores_gemma":[0.000030329262,0.0004244193,0.008455778,0.00014434935,0.000040171624,0.00113523,0.00012923386,0.0017381496,0.9077386,0.00056383864,0.07955695,0.000042982847],"about_ca_topic_score_codex":0.00094505167,"about_ca_topic_score_gemma":0.0013774696,"teacher_disagreement_score":0.0075192014,"about_ca_system_score_codex":0.00033063654,"about_ca_system_score_gemma":0.0004021276,"threshold_uncertainty_score":0.025154293},"labels":[],"label_agreement":null},{"id":"W2166404936","doi":"10.1128/jcm.02457-10","title":"Diagnostic Performance of Filter Paper Lesion Impression PCR for Secondarily Infected Ulcers and Nonulcerative Lesions Caused by Cutaneous Leishmaniasis","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Agency of Canada; Toronto General Hospital","funders":"","keywords":"Lesion; Cutaneous leishmaniasis; Leishmaniasis; Medicine; Pathology","score_opus":0.0389017474737244,"score_gpt":0.36485358769826726,"score_spread":0.3259518402245429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166404936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641705,0.0014185737,0.0015577783,0.00002200535,0.000022685155,0.000027485556,0.00003018191,0.000022980685,0.00048119007],"genre_scores_gemma":[0.9958994,0.00027111341,0.0035977096,0.000028713424,0.000015996078,0.00001281775,0.000057485064,0.0000050046897,0.00011165973],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99724615,0.00117356,0.00020438364,0.00045268753,0.00073242106,0.00019084274],"domain_scores_gemma":[0.9936727,0.0040091705,0.0006023556,0.0005177106,0.0007898342,0.0004081452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034252242,0.0007204713,0.0005841411,0.0011539634,0.00020965468,0.0007411315,0.0004792059,0.0009525111,0.0006386851],"category_scores_gemma":[0.011190392,0.0004153918,0.00028589304,0.00029804397,0.00054140773,0.00066396274,0.00032560527,0.00043036774,0.00032450916],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013283641,0.0013564095,0.6489207,0.0006292251,0.00036218384,0.0012813485,0.0016265168,0.00097161,0.2053821,0.0001070862,0.00032319658,0.12575594],"study_design_scores_gemma":[0.00038794716,0.02828118,0.77156377,0.00016926574,0.00068543834,0.0119615905,0.0007134698,0.013898216,0.17045124,0.0001850786,0.0015725568,0.00013023372],"about_ca_topic_score_codex":0.00079357444,"about_ca_topic_score_gemma":0.001117219,"teacher_disagreement_score":0.0034252242,"about_ca_system_score_codex":0.0003658344,"about_ca_system_score_gemma":0.00020896355,"threshold_uncertainty_score":0.018114567},"labels":[],"label_agreement":null},{"id":"W2166609399","doi":"10.1128/jcm.02707-05","title":"<i>Streptococcus pseudoporcinus</i> sp. nov., a Novel Species Isolated from the Genitourinary Tract of Women","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal; Institut National de Santé Publique du Québec","funders":"","keywords":"Streptococcus; Microbiology; Biology; Genitourinary system; 16S ribosomal RNA; Ribosomal RNA; Bacteria; Gene; Genetics; Anatomy","score_opus":0.040849997428683976,"score_gpt":0.33497433020574563,"score_spread":0.2941243327770616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166609399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960878,0.0011045254,0.0005820524,0.0002286094,0.000046259953,0.000055560402,0.00050637097,0.000018931347,0.0013699209],"genre_scores_gemma":[0.9945644,0.000909003,0.002499167,0.00016982816,0.00007963254,0.000027154994,0.0011268874,0.00000837759,0.0006154421],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9997563,0.00003071114,0.00003141474,0.00005712803,0.00006266267,0.000061699946],"domain_scores_gemma":[0.99965954,0.00005240406,0.0001479946,0.000019583273,0.000053361553,0.00006703719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013990409,0.00044445685,0.00032498103,0.0006065744,0.00048438532,0.0005701279,0.00026814645,0.00051627576,0.00085686636],"category_scores_gemma":[0.000726065,0.00015018742,0.00020356046,0.0006608734,0.0003954858,0.00036902298,0.00035577375,0.00029118956,0.00033890075],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016038065,0.00023020928,0.471736,0.0012780413,0.00010221331,0.034017403,0.0020759897,0.0006868468,0.39292854,0.00038886163,0.0022844574,0.09266764],"study_design_scores_gemma":[0.00003690626,0.0014226503,0.7857368,0.00017406148,0.00015483564,0.10061584,0.0033346214,0.0009767974,0.08839932,0.00036563067,0.018721402,0.00006104506],"about_ca_topic_score_codex":0.0032563226,"about_ca_topic_score_gemma":0.0032723167,"teacher_disagreement_score":0.0032563226,"about_ca_system_score_codex":0.00022376791,"about_ca_system_score_gemma":0.00052309816,"threshold_uncertainty_score":0.0064747334},"labels":[],"label_agreement":null},{"id":"W2166661158","doi":"10.1128/jcm.40.4.1225-1229.2002","title":"<i>Escherichia coli</i> <i>ehl1</i> Gene-Positive Serotype O18ac:H31 Associated with an Outbreak of Diarrhea in a Neonatal Nursery in Neuquen City, Argentina","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Outbreak; Pulsed-field gel electrophoresis; Microbiology; Diarrhea; Serotype; Escherichia coli; Biology; RAPD; Virology; Ampicillin; Genotype; Antibiotics; Medicine; Gene; Population; Internal medicine","score_opus":0.03368113416082856,"score_gpt":0.3253261838872825,"score_spread":0.29164504972645394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166661158","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9994363,0.00009452027,0.00007107287,0.000030669853,0.0000063986754,0.00002338849,0.00005852409,0.0000025967963,0.00027642515],"genre_scores_gemma":[0.9990095,0.00027150035,0.00023442635,0.000054655273,0.00002258673,0.000013035248,0.00023170072,0.0000022247914,0.00016030473],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995542,0.000072130286,0.00004705134,0.00011622995,0.00008229709,0.00012795503],"domain_scores_gemma":[0.99949336,0.000050967825,0.00019630135,0.000019274474,0.00009382056,0.00014629605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037597225,0.00057907274,0.00041820927,0.0005247459,0.0009532529,0.00062676764,0.00040918816,0.0005353448,0.00048637175],"category_scores_gemma":[0.00085738546,0.0004006036,0.00020008291,0.0004895584,0.0005116725,0.0003193643,0.00046856428,0.00043802994,0.0001734725],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042069636,0.00024164551,0.9504417,0.00011738793,0.000042695938,0.021181645,0.0012949447,0.00015489312,0.02100379,0.000027146389,0.0004136755,0.0046597472],"study_design_scores_gemma":[0.000020651927,0.00047268585,0.9863513,0.000027799297,0.000019480132,0.00979277,0.0012690328,0.00017072925,0.0014051924,0.000011521582,0.00044745018,0.000011428279],"about_ca_topic_score_codex":0.0270875,"about_ca_topic_score_gemma":0.03434353,"teacher_disagreement_score":0.0270875,"about_ca_system_score_codex":0.0015520523,"about_ca_system_score_gemma":0.0007701669,"threshold_uncertainty_score":0.05385971},"labels":[],"label_agreement":null},{"id":"W2166661460","doi":"10.1128/jcm.43.8.4083-4091.2005","title":"Genetic Diversity among Type <i>emm28</i> Group A <i>Streptococcus</i> Strains Causing Invasive Infections and Pharyngitis","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Prophage; Biology; Genetics; Gene; Virulence; Genetic variation; Genetic diversity; Hypervariable region; Amplicon; Population; Insertion sequence; Streptococcus pyogenes; Microbiology; Genome; Polymerase chain reaction; Bacteriophage; Escherichia coli; Bacteria; Transposable element","score_opus":0.046172526239059625,"score_gpt":0.34713556255356337,"score_spread":0.3009630363145037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166661460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9997943,0.000018730529,0.000043587057,0.000003259329,3.963476e-7,0.000001444466,0.000049590257,7.6628e-7,0.000087923916],"genre_scores_gemma":[0.99917233,0.000033489054,0.0002049097,0.000010574866,0.0000022660117,0.0000042584547,0.00036410103,0.0000020989442,0.00020611445],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99975044,0.000035007855,0.000020490812,0.00008058786,0.00005806663,0.000055392138],"domain_scores_gemma":[0.99972445,0.000046747045,0.00009405047,0.000030433102,0.000049596052,0.000054799963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020610074,0.00020965889,0.00021690651,0.00065134524,0.00019302075,0.00032391137,0.00020873935,0.00021664133,0.00052486145],"category_scores_gemma":[0.0005401727,0.00013875013,0.000162335,0.00033916224,0.00027742723,0.00011429935,0.00023240104,0.0001907126,0.00018160675],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005193076,0.000106058775,0.67493623,0.000031504667,0.000087691835,0.00039811854,0.0007917272,0.0002654164,0.31670764,0.000106528416,0.000093929004,0.0059558135],"study_design_scores_gemma":[0.000006822066,0.00020181689,0.9942122,0.0000044227436,0.000016022694,0.0006350941,0.00028220494,0.00026451502,0.0040670973,0.000021448503,0.0002831096,0.0000051825646],"about_ca_topic_score_codex":0.0035536657,"about_ca_topic_score_gemma":0.0045630177,"teacher_disagreement_score":0.0035536657,"about_ca_system_score_codex":0.00031425426,"about_ca_system_score_gemma":0.0001824233,"threshold_uncertainty_score":0.007065952},"labels":[],"label_agreement":null},{"id":"W2166959492","doi":"10.1128/jcm.02831-14","title":"Hepatitis C Virus Genotype 7, a New Genotype Originating from Central Africa","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":220,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Institut National de Santé Publique du Québec","funders":"","keywords":"Genotype; Virology; Lineage (genetic); Virus; Biology; Hepatitis C virus; Hepacivirus; Genetics; Gene","score_opus":0.0744372058103951,"score_gpt":0.3954815943864122,"score_spread":0.32104438857601714,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166959492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99844474,0.00052458537,0.0002541667,0.00007804006,0.00001673199,0.00000998206,0.00005206884,0.0000046623204,0.0006149834],"genre_scores_gemma":[0.99876153,0.00029458685,0.00053044775,0.00010714052,0.000031504303,0.000006856289,0.00008537646,0.0000032630312,0.00017925985],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99989355,0.000017625414,0.000010951303,0.000025741663,0.000017747618,0.000034298904],"domain_scores_gemma":[0.99971944,0.00007586418,0.00009522726,0.00002043008,0.000033913453,0.000055004304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009758318,0.00028462076,0.00017166465,0.00047765055,0.00069638697,0.00038766622,0.00010640573,0.00032972335,0.00079599384],"category_scores_gemma":[0.0005735666,0.00013090328,0.00017219894,0.0002491969,0.00031330145,0.00018321401,0.00014558522,0.00027954363,0.00014613711],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001213766,0.00010352809,0.73531324,0.0002035138,0.0000694714,0.081492655,0.0036368994,0.0003463346,0.113569304,0.0012695255,0.0019191817,0.06086255],"study_design_scores_gemma":[0.00015526978,0.0010140588,0.6029626,0.00019228266,0.00018193068,0.35191664,0.0014368991,0.0011045741,0.013393293,0.000690977,0.026888888,0.00006242498],"about_ca_topic_score_codex":0.0024414675,"about_ca_topic_score_gemma":0.0027704386,"teacher_disagreement_score":0.0024414675,"about_ca_system_score_codex":0.0002737731,"about_ca_system_score_gemma":0.0002094541,"threshold_uncertainty_score":0.0048545003},"labels":[],"label_agreement":null},{"id":"W2167097830","doi":"10.1128/jcm.42.3.1035-1041.2004","title":"Characterization of Toxin A-Negative, Toxin B-Positive <i>Clostridium difficile</i> Isolates from Outbreaks in Different Countries by Amplified Fragment Length Polymorphism and PCR Ribotyping","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"University of Manitoba; Université Catholique de Louvain; Northwestern University","keywords":"Ribotyping; Biology; Microbiology; Pseudomembranous colitis; Amplified fragment length polymorphism; Toxin; Clostridium difficile toxin A; Clindamycin; Clostridium difficile; Typing; Polymerase chain reaction; Clostridiaceae; Gene; Genetics; Antibiotics; Population; Medicine","score_opus":0.022960696222378545,"score_gpt":0.30920857125190765,"score_spread":0.2862478750295291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167097830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983492,0.00038286834,0.00044132583,0.000025414463,0.000007594542,0.000027976608,0.00046748255,0.0000072898215,0.00029080932],"genre_scores_gemma":[0.9931114,0.0006423854,0.0027115876,0.00013276223,0.000017386654,0.000040929986,0.003085618,0.000021472682,0.00023646964],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993156,0.0001429677,0.00013827675,0.00017881379,0.0001175018,0.000106889915],"domain_scores_gemma":[0.9990601,0.0002425981,0.00033440595,0.000074326286,0.00016461364,0.0001239715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045693183,0.0003976674,0.00033241123,0.0010863971,0.00029617472,0.0005130774,0.00016638746,0.00035938874,0.00027437435],"category_scores_gemma":[0.0016875707,0.00027297944,0.00041629066,0.0010212273,0.0003065831,0.00017397375,0.0002702647,0.00031845947,0.00024191246],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012577049,0.0002538345,0.45464498,0.0003051416,0.00021077483,0.002330293,0.0014656376,0.0008147095,0.52177554,0.00005653802,0.00033681976,0.016548008],"study_design_scores_gemma":[0.00004839922,0.0007238745,0.96351266,0.00004867621,0.00019502635,0.005447757,0.00092915696,0.0004477586,0.026523178,0.000023630224,0.0020714498,0.00002847537],"about_ca_topic_score_codex":0.0029346964,"about_ca_topic_score_gemma":0.0023414064,"teacher_disagreement_score":0.0029346964,"about_ca_system_score_codex":0.00020353832,"about_ca_system_score_gemma":0.00022209572,"threshold_uncertainty_score":0.005835235},"labels":[],"label_agreement":null},{"id":"W2167166714","doi":"10.1128/jcm.00651-11","title":"Rapid Identification of Cryptococcus neoformans and Cryptococcus gattii by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Hospital for Sick Children; BC Centre for Disease Control; University of Toronto; Toronto Public Health","funders":"","keywords":"Cryptococcus neoformans; Cryptococcus gattii; Mass spectrometry; Cryptococcus; Matrix-assisted laser desorption/ionization; Microbiology; Cryptococcosis; Biology; Subspecies; Desorption; Chemistry; Chromatography","score_opus":0.029402161754678295,"score_gpt":0.3057768132317325,"score_spread":0.2763746514770542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167166714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95960546,0.0035643105,0.029164433,0.0003569903,0.00010939196,0.0003985978,0.0028086386,0.00057653623,0.0034157096],"genre_scores_gemma":[0.8965596,0.0031048069,0.09102311,0.00031864794,0.000055291337,0.00028333216,0.0042883167,0.000088102715,0.004278751],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989749,0.00011021131,0.000087633794,0.0001713404,0.00053094805,0.00012506312],"domain_scores_gemma":[0.9991559,0.00027025666,0.0001644289,0.000057102374,0.000249674,0.00010273548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007734818,0.0009814173,0.00062059145,0.0020541502,0.0004231304,0.00054800604,0.00036393653,0.00060676323,0.0010603423],"category_scores_gemma":[0.0018481938,0.0004466418,0.00025209683,0.00096208375,0.00036410082,0.00047105018,0.0005519557,0.00042419258,0.0006627423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002867589,0.000061975166,0.0040388475,0.00009343524,0.00000792832,0.000108491535,0.00003731496,0.000089681926,0.9784249,0.000056402238,0.00010090693,0.016693305],"study_design_scores_gemma":[0.000044869485,0.00072356244,0.09016228,0.000072276685,0.000057436748,0.0032941594,0.00021084458,0.0062257047,0.89312655,0.0003462175,0.005688595,0.00004755606],"about_ca_topic_score_codex":0.0027026988,"about_ca_topic_score_gemma":0.004585825,"teacher_disagreement_score":0.0027026988,"about_ca_system_score_codex":0.0003791743,"about_ca_system_score_gemma":0.00049348926,"threshold_uncertainty_score":0.005373955},"labels":[],"label_agreement":null},{"id":"W2167279178","doi":"10.1128/jcm.01313-08","title":"Genomic Comparison of PE and PPE Genes in the<i>Mycobacterium avium</i>Complex","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital; University of Calgary","funders":"Pennsylvania State University","keywords":"Biology; Mycobacterium; Gene; Paratuberculosis; Virulence; Microbiology; Insertion sequence; Genetics; Mycobacterium avium complex; Mycobacterium avium-intracellulare infection; Genome; Bacteria; Virology; Transposable element","score_opus":0.10964852513042264,"score_gpt":0.4405439222661362,"score_spread":0.3308953971357136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167279178","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805343,0.00041770216,0.00078093994,0.000028214412,0.0000038593903,0.000007887615,0.00041762268,0.000007112397,0.00028332497],"genre_scores_gemma":[0.9937224,0.0002526957,0.0022454718,0.00006247021,0.000009558597,0.000015839665,0.0032645133,0.00001263776,0.0004143697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998764,0.000018811983,0.000011089051,0.000046404733,0.00002498301,0.000022272241],"domain_scores_gemma":[0.99969995,0.00009479728,0.00008394001,0.00002725562,0.000034573255,0.000059589573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009922395,0.0002200866,0.00023167669,0.0005736913,0.00014782818,0.00028677998,0.00018543974,0.00031232685,0.0005079335],"category_scores_gemma":[0.0004716235,0.00012156241,0.0003140422,0.00038947703,0.00017908994,0.00014740098,0.00028645262,0.00032318835,0.00022413836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036825382,0.000045517336,0.016670993,0.00008128392,0.000043111966,0.0002510698,0.00018906126,0.0001286964,0.977372,0.000066114626,0.000037779988,0.004746038],"study_design_scores_gemma":[0.00004196182,0.0006548382,0.8625236,0.00004262315,0.00024307893,0.0040359404,0.00059813895,0.0022589625,0.12321323,0.00022221226,0.0061408775,0.000024554549],"about_ca_topic_score_codex":0.00071139814,"about_ca_topic_score_gemma":0.00050336536,"teacher_disagreement_score":0.00071139814,"about_ca_system_score_codex":0.00012498067,"about_ca_system_score_gemma":0.00008384966,"threshold_uncertainty_score":0.0016991496},"labels":[],"label_agreement":null},{"id":"W2167286853","doi":"10.1128/jcm.02142-08","title":"Major <i>Mycobacterium tuberculosis</i> Lineages Associate with Patient Country of Origin","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ste. Anne's Hospital; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Restriction fragment length polymorphism; Mycobacterium tuberculosis; Biology; Genotype; Tuberculosis; Genetics; Clade; Lineage (genetic); Molecular epidemiology; Evolutionary biology; Phylogenetics; Gene; Medicine","score_opus":0.030917471246892318,"score_gpt":0.37538629470810103,"score_spread":0.3444688234612087,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167286853","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99664104,0.000748545,0.00035343357,0.00010218686,0.0000066905777,0.000027990762,0.000510728,0.000019480247,0.0015899248],"genre_scores_gemma":[0.9986858,0.00027328817,0.0003698033,0.000051201205,0.000007299425,0.000006111719,0.0003277613,0.000010210255,0.0002685475],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995628,0.00008543485,0.000034470377,0.00009650874,0.00006374868,0.00015704181],"domain_scores_gemma":[0.99830365,0.0002209993,0.00079297385,0.00014543331,0.00030573178,0.00023123117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048566874,0.00033815458,0.00035996272,0.00087002374,0.00047647365,0.0008298308,0.00035395636,0.00034347645,0.0023639728],"category_scores_gemma":[0.0018785023,0.00016436276,0.00028416986,0.0010395146,0.00045176817,0.00021070076,0.00047609067,0.00043398488,0.000525517],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000980521,0.000007005533,0.9946666,0.000010916144,0.000016808512,0.00013340912,0.00015223525,0.00002581414,0.0024311994,0.000022215203,0.00013493974,0.0023008464],"study_design_scores_gemma":[0.0000030470942,0.00004289298,0.9981635,0.000009490291,0.000019072477,0.00055799534,0.00022851367,0.000079456455,0.0004937037,0.00001466744,0.0003842527,0.0000035234702],"about_ca_topic_score_codex":0.06048197,"about_ca_topic_score_gemma":0.09684445,"teacher_disagreement_score":0.06048197,"about_ca_system_score_codex":0.0007578412,"about_ca_system_score_gemma":0.0007509606,"threshold_uncertainty_score":0.12025982},"labels":[],"label_agreement":null},{"id":"W2167982330","doi":"10.1128/jcm.00456-06","title":"Contemporary Prevalence of BRO β-Lactamases in <i>Moraxella catarrhalis</i> : Report from the SENTRY Antimicrobial Surveillance Program (North America, 1997 to 2004)","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Moraxella catarrhalis; Moraxella (Branhamella) catarrhalis; Antimicrobial; Moraxella; Microbiology; Neisseriaceae; Antibacterial agent; Medicine; Biology; Antibiotics; Haemophilus influenzae; Bacteria","score_opus":0.018202019149532178,"score_gpt":0.3157104185411246,"score_spread":0.2975083993915924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167982330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764925,0.0006070361,0.000061425235,0.000075992735,0.0000044864996,0.0000053515805,0.0009973727,0.000017666709,0.00058136135],"genre_scores_gemma":[0.9984005,0.00031360576,0.00012521993,0.000055332483,0.000011374226,0.0000059115555,0.000985465,0.0000019279332,0.0001006087],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995974,0.00006344623,0.00004429167,0.00011153992,0.00011351002,0.000069757974],"domain_scores_gemma":[0.998543,0.00010027111,0.00067441346,0.000041919855,0.00048012516,0.00016027434],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041369058,0.00015638238,0.00018182819,0.0009538607,0.0002986803,0.0005752962,0.00044632432,0.00047564073,0.00045797028],"category_scores_gemma":[0.00086736056,0.00021009294,0.00016636937,0.00075161183,0.00034831688,0.00033133547,0.00021562004,0.00029836153,0.0002252597],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020786712,0.0000097411885,0.99724495,0.000013364369,0.000015422598,0.00004852624,0.00010475862,0.00001370015,0.00039890356,0.0000037974269,0.00029418245,0.0018318477],"study_design_scores_gemma":[0.0000011106883,0.000027492933,0.99922657,0.0000046535592,0.0000077220675,0.0002784492,0.0001238969,0.000031049345,0.00009865457,0.0000013112167,0.00019799444,0.0000012224647],"about_ca_topic_score_codex":0.06046437,"about_ca_topic_score_gemma":0.07668375,"teacher_disagreement_score":0.06046437,"about_ca_system_score_codex":0.0008541669,"about_ca_system_score_gemma":0.00040257387,"threshold_uncertainty_score":0.12022489},"labels":[],"label_agreement":null},{"id":"W2167987796","doi":"10.1128/jcm.00469-07","title":"Comparison of Two Versions of the IDI-MRSA Assay Using Charcoal Swabs for Prospective Nasal and Nonnasal Surveillance Samples","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"North York General Hospital; Toronto Public Health; University of Toronto","funders":"","keywords":"Staphylococcus aureus; Microbiology; Predictive value; Micrococcaceae; Medicine; Prospective cohort study; Methicillin-resistant Staphylococcus aureus; Biology; Internal medicine; Bacteria; Antibacterial agent; Antibiotics","score_opus":0.11244694527988225,"score_gpt":0.47102193647946805,"score_spread":0.3585749911995858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167987796","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9687544,0.0033916305,0.021956334,0.0002549197,0.0005844509,0.00049736677,0.0017514534,0.0003828533,0.002426506],"genre_scores_gemma":[0.95140195,0.0009635282,0.041174117,0.00034639955,0.00012788695,0.00030726037,0.0039900127,0.000101556,0.0015872008],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98159087,0.0054454915,0.0018886754,0.0032008851,0.007227012,0.0006470441],"domain_scores_gemma":[0.9678917,0.018536974,0.0032671187,0.0033832917,0.0060143303,0.00090654416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00968769,0.0014944772,0.0013053312,0.0020903859,0.00030709477,0.002142922,0.0016560773,0.0015482766,0.00082687516],"category_scores_gemma":[0.030314721,0.00118238,0.001275647,0.0012755983,0.00068305724,0.0008548647,0.0009309828,0.0019824915,0.0009012561],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.043483112,0.0023148626,0.56008655,0.0014701958,0.0018004234,0.0003989653,0.0015043559,0.002453105,0.25810352,0.00061474316,0.0016801968,0.12608995],"study_design_scores_gemma":[0.0010577568,0.03356996,0.5538285,0.00020804851,0.0023014084,0.005947483,0.000390064,0.019690951,0.3759962,0.00022409354,0.0064601074,0.00032539063],"about_ca_topic_score_codex":0.0016743133,"about_ca_topic_score_gemma":0.0025390077,"teacher_disagreement_score":0.00968769,"about_ca_system_score_codex":0.00076636794,"about_ca_system_score_gemma":0.00048206814,"threshold_uncertainty_score":0.051234007},"labels":[],"label_agreement":null},{"id":"W2168042077","doi":"10.1128/jcm.01808-13","title":"Detection of Influenza H7N9 Virus: All Molecular Tests Are Not Equal","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia; University of Calgary; Mount Sinai Hospital; Université de Montréal; Institut National de Santé Publique du Québec; Saskatchewan Disease Control Laboratory; Ministry of Health; University Health Network; Capital District Health Authority; Provincial Laboratory of Public Health; University of Toronto; Dalhousie University","funders":"Centers for Disease Control and Prevention; Research Innovation and Development Trust, University of Malta","keywords":"Virology; Orthomyxoviridae; Virus; Influenza A virus; Biology; Microbiology; Medicine","score_opus":0.1779331092950711,"score_gpt":0.4778143915356065,"score_spread":0.2998812822405354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168042077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.654713,0.07887353,0.076689735,0.03713619,0.0060566114,0.0006216169,0.0016609571,0.0021043143,0.14214414],"genre_scores_gemma":[0.9049168,0.014186443,0.057495467,0.0077282805,0.00057622045,0.00009231659,0.000561744,0.00011578883,0.0143269515],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98666465,0.0048276554,0.0010998301,0.0013049496,0.005351265,0.0007517083],"domain_scores_gemma":[0.9899031,0.0035577926,0.0012470176,0.0010585365,0.003812516,0.00042106095],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00935088,0.0009674979,0.00079803687,0.0014320783,0.0007959677,0.0036466627,0.0012259609,0.0016946299,0.005335474],"category_scores_gemma":[0.015266087,0.00053694105,0.0005227931,0.0011516617,0.0019086546,0.002933098,0.0010776375,0.0013247776,0.0036547326],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012378495,0.00048597011,0.20912392,0.0017710925,0.00062593207,0.001336193,0.0010796338,0.0011673265,0.1298155,0.005807153,0.016331615,0.63121784],"study_design_scores_gemma":[0.00010573588,0.0038580117,0.33723783,0.0026023209,0.0010073414,0.02206128,0.0046125855,0.007545267,0.33092847,0.016249252,0.273522,0.00026995636],"about_ca_topic_score_codex":0.0026532828,"about_ca_topic_score_gemma":0.003826946,"teacher_disagreement_score":0.00935088,"about_ca_system_score_codex":0.0009993194,"about_ca_system_score_gemma":0.0012390162,"threshold_uncertainty_score":0.04945278},"labels":[],"label_agreement":null},{"id":"W2168114816","doi":"10.1128/jcm.40.2.330-334.2002","title":"Roleof Picornaviruses in Flu-Like Illnesses of Adults Enrolled in anOseltamivir Treatment Study Who Had No Evidence of Influenza VirusInfection","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Picornavirus; Seroconversion; Rhinovirus; Medicine; Serology; Virology; Concordance; Virus; Internal medicine; Influenza A virus; Placebo; Orthomyxoviridae; Immunology; Biology; Antibody; Pathology","score_opus":0.19375006214968857,"score_gpt":0.48325150359383456,"score_spread":0.289501441444146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168114816","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987827,0.00080993096,0.0000444546,0.000037768663,0.00001584124,0.000054256845,0.000060435537,0.0000032257576,0.00019141789],"genre_scores_gemma":[0.99926823,0.00018209437,0.000091990885,0.00012950049,0.000034387733,0.000050853625,0.0001262739,7.7283084e-7,0.00011590164],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.999418,0.0002708359,0.00006134155,0.00008059095,0.00007804219,0.00009112725],"domain_scores_gemma":[0.99945456,0.00014456244,0.00012013278,0.000022593387,0.000050246043,0.00020792053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009142299,0.0003689468,0.0014348993,0.00019411596,0.00036107353,0.00040471254,0.00018602611,0.00064990815,0.0008616458],"category_scores_gemma":[0.0014165761,0.0002814748,0.0005080233,0.00020155612,0.00025837566,0.00040895026,0.00022270708,0.00049303693,0.000109731125],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.22897044,0.008896062,0.6670314,0.0006046928,0.0011972517,0.0005548973,0.00058542634,0.0005236213,0.024471102,0.000096882875,0.00084168813,0.0662266],"study_design_scores_gemma":[0.020552855,0.078745075,0.89545375,0.00005462961,0.00084481173,0.00036048185,0.00015573023,0.001203572,0.0012772679,0.000070474365,0.001255545,0.000025701996],"about_ca_topic_score_codex":0.00052681967,"about_ca_topic_score_gemma":0.0011498366,"teacher_disagreement_score":0.0014348993,"about_ca_system_score_codex":0.00022963148,"about_ca_system_score_gemma":0.00025617832,"threshold_uncertainty_score":0.00483495},"labels":[],"label_agreement":null},{"id":"W2168283805","doi":"10.1128/jcm.01566-08","title":"Interpretation of MRSA <i>Select</i> Screening Agar at 24 Hours of Incubation","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Incubation; Agar; Chromogenic; Incubation period; Microbiology; Staphylococcus aureus; Micrococcaceae; Agar plate; Methicillin-resistant Staphylococcus aureus; Medicine; Biology; Bacteria; Antibacterial agent; Chromatography; Chemistry; Antibiotics","score_opus":0.03530580559765643,"score_gpt":0.37120111513863385,"score_spread":0.3358953095409774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168283805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93238133,0.0025109467,0.044065308,0.00028292343,0.0002336928,0.0008591234,0.0034375314,0.0018901302,0.01433897],"genre_scores_gemma":[0.8922574,0.0030642753,0.08408727,0.00030975748,0.000059946233,0.0011469244,0.0068740626,0.0004440623,0.011756273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862206,0.00027891362,0.00016870986,0.00018321317,0.00062149495,0.00012554177],"domain_scores_gemma":[0.9983525,0.00036864434,0.00026484512,0.00014889313,0.0007523834,0.00011276965],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011678154,0.0010176242,0.0007598317,0.0016611717,0.0005051731,0.0008397895,0.0006347014,0.0004168341,0.004633785],"category_scores_gemma":[0.001878935,0.00023186146,0.000496262,0.000806261,0.00036563253,0.00030799228,0.0005825673,0.00035637149,0.0023932913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074128294,0.00013426825,0.025175419,0.00031661813,0.000035153163,0.0005655422,0.00039394406,0.00024150613,0.9538423,0.000116146184,0.0011101862,0.017327728],"study_design_scores_gemma":[0.000014324602,0.0011492613,0.13783285,0.000098100034,0.00008658099,0.0014931555,0.0005879696,0.0027847188,0.84510136,0.00014712986,0.010634147,0.00007045412],"about_ca_topic_score_codex":0.0014711398,"about_ca_topic_score_gemma":0.0022787915,"teacher_disagreement_score":0.004633785,"about_ca_system_score_codex":0.0002935606,"about_ca_system_score_gemma":0.00038806797,"threshold_uncertainty_score":0.015501559},"labels":[],"label_agreement":null},{"id":"W2168369733","doi":"10.1128/jcm.06186-11","title":"Comparison of the Luminex xTAG RVP Fast Assay and the Idaho Technology FilmArray RP Assay for Detection of Respiratory Viruses in Pediatric Patients at a Cancer Hospital","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Human metapneumovirus; Human bocavirus; Virology; Multiplex; Rhinovirus; Medicine; Respiratory system; Enterovirus; Virus; Biology; Respiratory tract infections; Internal medicine; Bioinformatics","score_opus":0.07765212628625369,"score_gpt":0.44798606835373356,"score_spread":0.3703339420674799,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168369733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825498,0.0044698035,0.009143146,0.00021077381,0.00011632311,0.00011220383,0.0006487311,0.000117784344,0.0026315616],"genre_scores_gemma":[0.9774336,0.001177402,0.01899285,0.0002864793,0.000055212982,0.00012797395,0.0011435864,0.000030784715,0.0007519768],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9910102,0.0038633514,0.00062398554,0.0012810124,0.0027607256,0.000460706],"domain_scores_gemma":[0.99246067,0.0045705433,0.001101833,0.00037290508,0.0012579266,0.00023622997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005705388,0.00086905644,0.0006223186,0.0012701446,0.00026822035,0.0013774026,0.0008120118,0.00072256644,0.00045086537],"category_scores_gemma":[0.008386082,0.0004977664,0.00049656036,0.0009376746,0.00035500954,0.0005526356,0.000528453,0.0006738202,0.0002522519],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004949603,0.00043515713,0.8413151,0.00048510946,0.00049696193,0.00033467638,0.0013583795,0.0025409085,0.08231383,0.0005607025,0.0016004316,0.0636091],"study_design_scores_gemma":[0.00020186717,0.0063633067,0.8563799,0.00016970153,0.0004372919,0.0024196582,0.000896018,0.0230638,0.10280952,0.00010976708,0.0070599103,0.000089223664],"about_ca_topic_score_codex":0.0043882094,"about_ca_topic_score_gemma":0.0048726606,"teacher_disagreement_score":0.005705388,"about_ca_system_score_codex":0.0010479819,"about_ca_system_score_gemma":0.00065979036,"threshold_uncertainty_score":0.030173302},"labels":[],"label_agreement":null},{"id":"W2168975607","doi":"10.1128/jcm.02213-09","title":"Evolutionary Changes Affecting Rapid Identification of 2008 Newcastle Disease Viruses Isolated from Double-Crested Cormorants","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"U.S. Poultry and Egg Association; U.S. Department of Agriculture","keywords":"Biology; Virulence; Newcastle disease; Phylogenetic tree; Virology; Genotype; Virus; Phylogenetics; Gene; Polymerase chain reaction; Primer (cosmetics); Cormorant; Genetics; Sequence analysis","score_opus":0.0841715374578393,"score_gpt":0.3991591611129303,"score_spread":0.31498762365509103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168975607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995454,0.000038776812,0.00019029892,0.0000068499735,0.0000028139432,0.000012703598,0.000056882996,0.000004504476,0.00014184361],"genre_scores_gemma":[0.9975304,0.00007425065,0.0014078321,0.000025148978,0.0000031138159,0.000015666756,0.0005353161,0.000009035992,0.00039920807],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997236,0.000023962628,0.000022501878,0.000095906835,0.00007176277,0.00006220448],"domain_scores_gemma":[0.9996402,0.00005782753,0.00010996292,0.000033148168,0.00008736761,0.000071389564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001936069,0.0003780419,0.00024008163,0.00037989466,0.00033596164,0.0004937932,0.00020852729,0.00042041246,0.00032089947],"category_scores_gemma":[0.00071765186,0.00018868066,0.0002284043,0.0002311562,0.00030202945,0.00018063877,0.0003566587,0.00041114417,0.00013999525],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017920464,0.00003705086,0.04172487,0.000034127,0.000014909249,0.00051751005,0.0005307344,0.00011448443,0.95269877,0.0000295442,0.000030399939,0.0040884074],"study_design_scores_gemma":[0.000020147647,0.0008313054,0.82643265,0.000022887216,0.000054629167,0.003830761,0.0015800849,0.001116512,0.16442892,0.000032616925,0.0016207488,0.000028811965],"about_ca_topic_score_codex":0.00848647,"about_ca_topic_score_gemma":0.01685938,"teacher_disagreement_score":0.00848647,"about_ca_system_score_codex":0.00057554245,"about_ca_system_score_gemma":0.0002663943,"threshold_uncertainty_score":0.016874194},"labels":[],"label_agreement":null},{"id":"W2169051265","doi":"10.1128/jcm.02919-12","title":"Invasive Sino-Orbital Mycosis in an Aplastic Anemia Patient Caused by Neosartorya laciniosa","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infectious Diseases and Mycology","field":"Veterinary","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; University of Alberta","funders":"Core Research for Evolutional Science and Technology; Natural Sciences and Engineering Research Council of Canada","keywords":"Voriconazole; Aplastic anemia; Caspofungin; Medicine; Anidulafungin; Enucleation; Micafungin; Surgery; Dermatology; Internal medicine; Antifungal; Bone marrow","score_opus":0.041649134639900984,"score_gpt":0.35169841915801847,"score_spread":0.3100492845181175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169051265","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956018,0.0009272176,0.0005616993,0.00034758743,0.000040222716,0.000040532854,0.000041560674,0.000029975341,0.0024094156],"genre_scores_gemma":[0.99861944,0.0005084756,0.0003325152,0.00012696642,0.00008422604,0.0000055906207,0.000023964574,0.000004008207,0.00029470198],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99973756,0.000029178625,0.00003175173,0.000056663368,0.000045627232,0.00009923888],"domain_scores_gemma":[0.99924135,0.00023457514,0.00018553183,0.000055867804,0.00004154991,0.00024109619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019746761,0.0011772021,0.00067286566,0.0009160165,0.0017645344,0.0009939219,0.000372278,0.0017990008,0.0012683003],"category_scores_gemma":[0.0011949696,0.0006084731,0.00055615517,0.0005044672,0.0010483589,0.00075095776,0.0007937359,0.0013907823,0.00037990412],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013229207,0.000082070364,0.042436197,0.000043843553,0.000009071163,0.95085174,0.0006317549,0.000048780217,0.0035969992,0.00009147983,0.00011276575,0.0019629963],"study_design_scores_gemma":[0.000021786018,0.00025714637,0.020421572,0.000020110494,0.000027657677,0.976976,0.0005001155,0.00020486837,0.0010312251,0.00009412066,0.00043424394,0.000011259424],"about_ca_topic_score_codex":0.00146511,"about_ca_topic_score_gemma":0.0020192137,"teacher_disagreement_score":0.0017990008,"about_ca_system_score_codex":0.00044888415,"about_ca_system_score_gemma":0.00055026985,"threshold_uncertainty_score":0.004242897},"labels":[],"label_agreement":null},{"id":"W2169505520","doi":"10.1128/jcm.05316-11","title":"Evaluation of Aspergillus PCR Protocols for Testing Serum Specimens","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fundació Institut de Recerca Hospital Universitari Vall d’Hebron; Instituto de Salud Carlos III; Università degli Studi di Verona; Hospital for Sick Children; Università degli Studi di Padova; Cardiff University; Radboud Universiteit; Emory University","keywords":"Aspergillus; Biology; Aspergillus fumigatus; Polymerase chain reaction; Internal transcribed spacer; Real-time polymerase chain reaction; Bioinformatics; Computational biology; Gene; Microbiology; Genetics; Ribosomal RNA","score_opus":0.2889524048787252,"score_gpt":0.46431594975613566,"score_spread":0.17536354487741046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169505520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6414062,0.018530173,0.32348064,0.0011462998,0.00043679168,0.006126442,0.0022808788,0.0011635239,0.005428985],"genre_scores_gemma":[0.5712031,0.008027599,0.41206375,0.0005720521,0.00011595804,0.0025731213,0.0036943231,0.0002518764,0.0014981556],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9446659,0.023853958,0.006948007,0.005376161,0.018095015,0.0010609769],"domain_scores_gemma":[0.96232575,0.016958201,0.004294154,0.003569101,0.012352182,0.00050065183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.05110003,0.0013395362,0.0010020279,0.0024659047,0.0006330681,0.0015513358,0.0022679607,0.0011104605,0.0006162455],"category_scores_gemma":[0.061005056,0.0007914127,0.0010033753,0.0019974331,0.0009952427,0.00086848857,0.0010815056,0.0009894237,0.00069667335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028863666,0.0007488658,0.08226629,0.0035912595,0.0010072191,0.00038820718,0.0016254256,0.009099934,0.63720167,0.0014027864,0.0013955195,0.2583865],"study_design_scores_gemma":[0.00015219036,0.005755876,0.04028371,0.0006264292,0.0010697962,0.002394212,0.00063447765,0.018891742,0.9169213,0.0017367504,0.011373557,0.00015994301],"about_ca_topic_score_codex":0.0017775521,"about_ca_topic_score_gemma":0.0022497175,"teacher_disagreement_score":0.05110003,"about_ca_system_score_codex":0.0013771488,"about_ca_system_score_gemma":0.0018850483,"threshold_uncertainty_score":0.27024603},"labels":[],"label_agreement":null},{"id":"W2169749255","doi":"10.1128/jcm.41.8.3784-3789.2003","title":"Vaginal Swabs Are Appropriate Specimens for Diagnosis of Genital Tract Infection with <i>Chlamydia trachomatis</i>","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":175,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Nucleic Acid Amplification Tests; Chlamydia trachomatis; Medicine; Asymptomatic; Chlamydia; Sexually transmitted disease; Sex organ; Ligase chain reaction; Vagina; Chlamydia trachomatis infection; Trichomoniasis; Internal medicine; Gynecology; Virology; Polymerase chain reaction; Surgery; Immunology; Biology; Syphilis","score_opus":0.05181126584998693,"score_gpt":0.3623928573664074,"score_spread":0.3105815915164205,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169749255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9777109,0.008247952,0.0043855724,0.00031678795,0.00014521518,0.00046242072,0.0018293908,0.00016005326,0.0067417054],"genre_scores_gemma":[0.9787652,0.004189798,0.012467061,0.00038591182,0.00009907559,0.0001475466,0.0018811222,0.000034217537,0.0020301247],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990595,0.00036563748,0.00015468923,0.0001240327,0.00020983373,0.00008625153],"domain_scores_gemma":[0.99846387,0.00040452517,0.0005732336,0.000096845135,0.00032664888,0.00013492744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000820923,0.00045499267,0.00049320736,0.00056285557,0.00031536835,0.00049212744,0.00028613274,0.00041709782,0.0017317596],"category_scores_gemma":[0.0027252303,0.00024739865,0.00015357323,0.0004434245,0.00028892222,0.00028174382,0.00022745265,0.00019880253,0.000781081],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001211138,0.0004306892,0.8307808,0.0007817986,0.00011625598,0.0021203996,0.00068559736,0.00016806542,0.06487798,0.00016603868,0.002900123,0.09576105],"study_design_scores_gemma":[0.0001387391,0.004267295,0.90360063,0.00051464076,0.00013334992,0.015018042,0.001956868,0.00054578466,0.04703045,0.00021096216,0.026527356,0.00005583259],"about_ca_topic_score_codex":0.0013794275,"about_ca_topic_score_gemma":0.0031611265,"teacher_disagreement_score":0.0017317596,"about_ca_system_score_codex":0.00016749151,"about_ca_system_score_gemma":0.0002722857,"threshold_uncertainty_score":0.0057932734},"labels":[],"label_agreement":null},{"id":"W2169753995","doi":"10.1128/jcm.38.1.375-381.2000","title":"Pulmonary Infection Caused by <i>Gymnascella hyalinospora</i> in a Patient with Acute Myelogenous Leukemia","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Leukemia; Biology; Itraconazole; Fluconazole; Pathology; Biopsy; Amphotericin B; Pancytopenia; Medicine; Microbiology; Immunology; Antifungal; Bone marrow","score_opus":0.016075749142220045,"score_gpt":0.3093610489270375,"score_spread":0.29328529978481743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169753995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953589,0.0007373562,0.00043948015,0.00045619282,0.000028211996,0.000033117118,0.00006479517,0.00003554948,0.0028463057],"genre_scores_gemma":[0.9990374,0.00024327837,0.00018733289,0.00021302835,0.00005454449,0.0000042666925,0.00003180456,0.0000039274983,0.00022451558],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9998461,0.000016534354,0.000019635367,0.00003582271,0.000017547029,0.00006438269],"domain_scores_gemma":[0.9996201,0.0000975892,0.000104910236,0.000018504252,0.000021861259,0.00013718556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011704394,0.0006461888,0.00047176194,0.00048207756,0.0011940292,0.000617622,0.00024704082,0.0011220408,0.0013425996],"category_scores_gemma":[0.0007297157,0.00036465403,0.00029913627,0.0004178227,0.00047987417,0.0006054008,0.00045595982,0.0008137038,0.00036899853],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015892526,0.000094533694,0.16030768,0.000059585444,0.000015863037,0.82913876,0.0009119868,0.000099530225,0.0053642453,0.00010552796,0.00035053623,0.0033928202],"study_design_scores_gemma":[0.00002923808,0.00038367472,0.07941045,0.00003231694,0.000036812613,0.91626394,0.0006430142,0.00043459315,0.0011766844,0.00009077887,0.0014839525,0.000014609206],"about_ca_topic_score_codex":0.0012965038,"about_ca_topic_score_gemma":0.0015793623,"teacher_disagreement_score":0.0013425996,"about_ca_system_score_codex":0.00031788193,"about_ca_system_score_gemma":0.00022605665,"threshold_uncertainty_score":0.0044914484},"labels":[],"label_agreement":null},{"id":"W2169863761","doi":"10.1128/jcm.01202-06","title":"Detection of Severe Acute Respiratory Syndrome Coronavirus in Stool Specimens by Commercially Available Real-Time Reverse Transcriptase PCR Assays","year":2006,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Calgary; Toronto Public Health; Hospital for Sick Children; St. Joseph’s Healthcare Hamilton; SickKids Foundation; University of Toronto; Mount Sinai Hospital; Health Sciences Centre; Sunnybrook Health Science Centre","funders":"Hospital for Sick Children; Ontario Ministry of Health and Long-Term Care","keywords":"Coronavirus; Virology; Reverse transcriptase; Biology; Respiratory system; Coronaviridae; Reverse transcription polymerase chain reaction; Real-time polymerase chain reaction; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); RNA extraction; Polymerase chain reaction; RNA; Coronavirus disease 2019 (COVID-19); Medicine; Gene; Messenger RNA; Internal medicine","score_opus":0.06850229313594895,"score_gpt":0.3800034631916253,"score_spread":0.31150117005567635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169863761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.82275975,0.005953075,0.15999304,0.0002652635,0.00028041334,0.0021174473,0.003927606,0.00097637775,0.0037270966],"genre_scores_gemma":[0.6088234,0.004751235,0.37117052,0.00027246017,0.0001607196,0.0029034878,0.0074091,0.00017384546,0.004335374],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971553,0.0011007695,0.00041179202,0.00044901605,0.0006895827,0.00019357013],"domain_scores_gemma":[0.99629104,0.0018236066,0.0006351539,0.00032851097,0.0008270008,0.00009466874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027092888,0.0011025192,0.001076352,0.0010831888,0.00022604717,0.0007372213,0.0006101644,0.0006263434,0.0017306069],"category_scores_gemma":[0.0042555407,0.0005397975,0.0005636796,0.0007300746,0.0005284303,0.00037916092,0.00022975325,0.00091237464,0.0010817518],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046938483,0.00016975579,0.0051853457,0.0003107093,0.00003254596,0.00009714213,0.00011300184,0.00019643623,0.98116416,0.000080421145,0.00016626043,0.012014974],"study_design_scores_gemma":[0.00022412982,0.0040099653,0.015504394,0.000095696494,0.00017972362,0.00079047936,0.00020434223,0.0045223143,0.96864456,0.00020456334,0.0055661527,0.00005366321],"about_ca_topic_score_codex":0.00023776219,"about_ca_topic_score_gemma":0.0007254349,"teacher_disagreement_score":0.0027092888,"about_ca_system_score_codex":0.00026472527,"about_ca_system_score_gemma":0.00049899396,"threshold_uncertainty_score":0.014328241},"labels":[],"label_agreement":null},{"id":"W2169959573","doi":"10.1128/jcm.39.7.2412-2417.2001","title":"<i>Helicobacter winghamensis</i> sp. nov., a Novel <i>Helicobacter</i> sp. Isolated from Patients with Gastroenteritis","year":2001,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Biology; Helicobacter; Microbiology; 16S ribosomal RNA; Nalidixic acid; Campylobacter; Bacteria; Helicobacter pylori; Sequence analysis; Genetics; Ampicillin; Antibiotics; Gene","score_opus":0.023840013656505836,"score_gpt":0.28866831302106927,"score_spread":0.2648282993645634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169959573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811065,0.00080157194,0.0003058371,0.00007898189,0.00003294273,0.000035349778,0.00023801226,0.000011776547,0.00038474437],"genre_scores_gemma":[0.99771833,0.00036043287,0.0009282234,0.00012530765,0.00007094786,0.000014312349,0.0005869398,0.0000054689085,0.00019005327],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99973935,0.00001997317,0.000046405097,0.00008180718,0.00004334966,0.00006915309],"domain_scores_gemma":[0.9995721,0.000050533137,0.00015534916,0.00002156973,0.00007118191,0.00012927307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014604474,0.00046540578,0.00034781685,0.00041862903,0.0005645219,0.00061367685,0.0002573048,0.00040702333,0.00052081404],"category_scores_gemma":[0.0005473053,0.0002462784,0.00027250696,0.00039768103,0.00037422345,0.00044872775,0.00033942377,0.0002840087,0.00027928228],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009191046,0.00012887578,0.84246814,0.00037470864,0.00008971618,0.014322215,0.0011793324,0.00023125696,0.11697801,0.00008018075,0.0009512895,0.02227719],"study_design_scores_gemma":[0.000059186197,0.0010177835,0.9290897,0.00007846688,0.00016877938,0.039699815,0.001820381,0.00045404464,0.021041041,0.00006004514,0.0064823404,0.000028402863],"about_ca_topic_score_codex":0.0036796904,"about_ca_topic_score_gemma":0.0036219317,"teacher_disagreement_score":0.0036796904,"about_ca_system_score_codex":0.00034223666,"about_ca_system_score_gemma":0.0003326309,"threshold_uncertainty_score":0.0073165298},"labels":[],"label_agreement":null},{"id":"W2169982738","doi":"10.1128/jcm.42.1.45-51.2004","title":"Multiplex Real-Time PCR Assay for Detection of Influenza and Human Respiratory Syncytial Viruses","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Multiplex; Virology; Multiplex polymerase chain reaction; Virus; Biology; Influenza A virus; Respiratory tract infections; Antigen; Real-time polymerase chain reaction; Microbiology; Polymerase chain reaction; Respiratory system; Gene; Immunology","score_opus":0.18138035821526477,"score_gpt":0.4928688062306543,"score_spread":0.31148844801538955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169982738","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25641865,0.008782454,0.717435,0.00030925794,0.0010522995,0.0028247728,0.0034651319,0.0039729225,0.0057395063],"genre_scores_gemma":[0.19752939,0.0027969694,0.7806012,0.00034692453,0.00029035393,0.004963165,0.0041199233,0.00016920501,0.009182846],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940102,0.0017767872,0.00047103866,0.0015728918,0.0017985923,0.00037048786],"domain_scores_gemma":[0.99785405,0.0007944735,0.0003749654,0.00023645534,0.0005501602,0.00018987402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042195553,0.0018858677,0.0018426987,0.0030165005,0.0004593709,0.0010740171,0.0013218297,0.0009957682,0.003342659],"category_scores_gemma":[0.0042260415,0.0010317974,0.0010583814,0.0015872514,0.0005418019,0.0010402397,0.0007885386,0.0018271662,0.0015143213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013204191,0.00050156185,0.0069381357,0.00049249444,0.00018680168,0.00026706632,0.0003774151,0.001431516,0.9364511,0.0010483178,0.0024960132,0.048489235],"study_design_scores_gemma":[0.00046198536,0.0050564883,0.020776143,0.00023417604,0.00034819715,0.002857875,0.00019111251,0.071270786,0.8521217,0.0014926943,0.044914596,0.0002742489],"about_ca_topic_score_codex":0.00023481679,"about_ca_topic_score_gemma":0.00050726556,"teacher_disagreement_score":0.0042195553,"about_ca_system_score_codex":0.00065187743,"about_ca_system_score_gemma":0.0005978537,"threshold_uncertainty_score":0.022315443},"labels":[],"label_agreement":null},{"id":"W2170009154","doi":"10.1128/jcm.41.6.2587-2592.2003","title":"Phenotypic Description and Antimicrobial Susceptibilities of <i>Aerococcus sanguinicola</i> Isolates from Human Clinical Samples","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infective Endocarditis Diagnosis and Management","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Microbiology; Cefotaxime; Penicillin; Biology; Ampicillin; Vancomycin; Erythromycin; Quinupristin; Antibiotics; Bacteria; Staphylococcus aureus","score_opus":0.08276629589356604,"score_gpt":0.3833574255053566,"score_spread":0.3005911296117906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170009154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964405,0.0010762269,0.00084240665,0.000057672616,0.000010874129,0.00005080551,0.0006631611,0.000018366665,0.0008399123],"genre_scores_gemma":[0.99478215,0.0007241795,0.0023666676,0.00007899148,0.000022648408,0.00004420612,0.0015050235,0.00001115627,0.00046493972],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994803,0.00011267633,0.000112217574,0.00010702505,0.00011896476,0.00006884876],"domain_scores_gemma":[0.99947816,0.00014895046,0.00010883034,0.00005328404,0.00014522167,0.000065608525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026022663,0.0004421677,0.0004080151,0.00054180087,0.00022233005,0.00037980685,0.00021140407,0.00028996644,0.00079233747],"category_scores_gemma":[0.0011682721,0.000112062036,0.00023727553,0.00061264046,0.0002456108,0.00017233346,0.00024997,0.00022628177,0.00032982367],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001208175,0.000364409,0.30845138,0.0004944762,0.00008835396,0.0038961945,0.001241485,0.00037545507,0.6514453,0.00008302825,0.00052267197,0.031828985],"study_design_scores_gemma":[0.000052635558,0.0035283277,0.68471426,0.00012488737,0.00019834298,0.035601813,0.0025066363,0.0009693763,0.26008445,0.000110822235,0.0120405955,0.000068005655],"about_ca_topic_score_codex":0.0017373395,"about_ca_topic_score_gemma":0.0014318158,"teacher_disagreement_score":0.0017373395,"about_ca_system_score_codex":0.00014474406,"about_ca_system_score_gemma":0.00014562716,"threshold_uncertainty_score":0.0034545064},"labels":[],"label_agreement":null},{"id":"W2170116595","doi":"10.1128/jcm.01684-08","title":"Parotitis in a Child Infected with Triple-Reassortant Influenza A Virus in Canada in 2007","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministry of Health and Long Term Care; Public Health Agency of Canada","funders":"","keywords":"Parotitis; Virology; Virus isolation; Serology; Virus; Isolation (microbiology); Biology; Viral disease; Influenza A virus; Medicine; Immunology; Microbiology; Antibody","score_opus":0.061282426399086355,"score_gpt":0.4057854598162885,"score_spread":0.3445030334172021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170116595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99633527,0.00042847588,0.000079697675,0.00052801985,0.00003926145,0.000048112302,0.000249318,0.000016272761,0.002275599],"genre_scores_gemma":[0.9986803,0.00026885842,0.000112452966,0.00023021913,0.000014899651,0.0000053000886,0.00011955155,0.0000043244945,0.00056402263],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9995807,0.000015356833,0.00001640915,0.000040340045,0.00011368958,0.00023345392],"domain_scores_gemma":[0.99940836,0.000032607553,0.00008770301,0.000009299952,0.00014390901,0.00031813508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000118864686,0.00049121334,0.00048675344,0.0006090919,0.0040331637,0.00069779967,0.00063887227,0.0007877462,0.0013895354],"category_scores_gemma":[0.00064200506,0.0004106616,0.00035426035,0.0010139622,0.0012278277,0.0003306192,0.000638935,0.001723347,0.00018787838],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033408447,0.0002482796,0.7989653,0.0000876416,0.00003958847,0.18517247,0.004214117,0.00012424112,0.0041274293,0.00022986453,0.0019502303,0.00450675],"study_design_scores_gemma":[0.00004203303,0.00044401633,0.88368964,0.00006771141,0.000060522598,0.10324817,0.009485216,0.00043181778,0.00068219285,0.00007181639,0.001732166,0.000044767232],"about_ca_topic_score_codex":0.88220894,"about_ca_topic_score_gemma":0.9423307,"teacher_disagreement_score":0.11779106,"about_ca_system_score_codex":0.012444184,"about_ca_system_score_gemma":0.010170834,"threshold_uncertainty_score":0.23696947},"labels":[],"label_agreement":null},{"id":"W2170203166","doi":"10.1128/jcm.42.10.4566-4576.2004","title":"Large-Scale Comparative Genomics Meta-Analysis of <i>Campylobacter jejuni</i> Isolates Reveals Low Level of Genome Plasticity","year":2004,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; Health Canada; Institute for Biological Sciences","funders":"Health Canada; University of Ottawa","keywords":"Campylobacter jejuni; Biology; Genomics; Genome; Genetics; Computational biology; Meta-analysis; Comparative genomics; Gene; Bacteria; Medicine","score_opus":0.3921380719762472,"score_gpt":0.4242003763336809,"score_spread":0.03206230435743368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170203166","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99679595,0.00023550936,0.0020918618,0.000035078796,0.0000029555297,0.000019936106,0.00051206234,0.000023863988,0.0002827212],"genre_scores_gemma":[0.9939354,0.0001390475,0.0043657455,0.00004052495,0.000004725295,0.000026848167,0.0013783902,0.000017914026,0.00009142564],"study_design_codex":"bench_or_experimental","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99911076,0.00016609186,0.00005229533,0.0003268714,0.00022815168,0.000115792565],"domain_scores_gemma":[0.9993981,0.00024049672,0.00009842453,0.00013312444,0.000080810074,0.000049126567],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00097560836,0.0004455848,0.00079083827,0.001096891,0.00043798398,0.0007735625,0.000444489,0.00047336743,0.00030294017],"category_scores_gemma":[0.0012996206,0.0002477225,0.00055927795,0.001319771,0.00031316528,0.0003252882,0.00060668716,0.0005411165,0.00009336808],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004905424,0.00012856624,0.07770142,0.00014937046,0.0004966941,0.00012133673,0.00040010526,0.0016690947,0.90440756,0.000092911694,0.00007610675,0.014266335],"study_design_scores_gemma":[0.000026533527,0.00066334265,0.88276494,0.000027444801,0.0006969648,0.0005034636,0.00091370556,0.01022358,0.102024004,0.00031886375,0.0017794488,0.00005774359],"about_ca_topic_score_codex":0.0025744874,"about_ca_topic_score_gemma":0.0038837017,"teacher_disagreement_score":0.0025744874,"about_ca_system_score_codex":0.0004776867,"about_ca_system_score_gemma":0.00034434363,"threshold_uncertainty_score":0.005159557},"labels":[],"label_agreement":null},{"id":"W2170205901","doi":"10.1128/jcm.41.11.5113-5120.2003","title":"Pulsed-Field Gel Electrophoresis Typing of Oxacillin-Resistant<i>Staphylococcus aureus</i>Isolates from the United States: Establishing a National Database","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1409,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pulsed-field gel electrophoresis; Microbiology; Staphylococcus aureus; Biology; Multilocus sequence typing; Methicillin-resistant Staphylococcus aureus; Typing; Database; Virulence; Vancomycin; Molecular epidemiology; Staphylococcal infections; Virology; Genotype; Genetics; Bacteria; Gene","score_opus":0.04204365234995128,"score_gpt":0.3460115456481483,"score_spread":0.303967893298197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170205901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9858133,0.00089530146,0.003570595,0.00013471204,0.000019274086,0.00012981029,0.0071736295,0.00007225692,0.0021911156],"genre_scores_gemma":[0.94928443,0.0010250247,0.019341968,0.0002440349,0.000016079952,0.00018970274,0.029448269,0.000027255974,0.00042324874],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99942917,0.00009984439,0.00016600748,0.00010719486,0.00015734535,0.00004045667],"domain_scores_gemma":[0.9976024,0.0003865524,0.00048358119,0.00020924353,0.0011224085,0.00019589165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011208145,0.00022445233,0.0003112496,0.002476544,0.00036924257,0.00048544657,0.000416645,0.00025765513,0.00057884294],"category_scores_gemma":[0.0019552584,0.00015744107,0.00015699344,0.001727263,0.00014027853,0.00033113212,0.0004145415,0.00026958116,0.00014653745],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000413291,0.00038955724,0.8225944,0.00043727437,0.00013162153,0.00070237194,0.0014361952,0.0012505315,0.06525827,0.00042923816,0.004825578,0.10213165],"study_design_scores_gemma":[0.000027337213,0.0004244495,0.96007115,0.00016636352,0.00009006139,0.0015449742,0.0007485402,0.0026468055,0.01499842,0.00012450763,0.019134738,0.000022730643],"about_ca_topic_score_codex":0.011739903,"about_ca_topic_score_gemma":0.018179718,"teacher_disagreement_score":0.011739903,"about_ca_system_score_codex":0.0004746122,"about_ca_system_score_gemma":0.00084930426,"threshold_uncertainty_score":0.023343146},"labels":[],"label_agreement":null},{"id":"W2170220195","doi":"10.1128/jcm.00968-07","title":"Narrow-Spectrum Cephalosporin Susceptibility Testing of <i>Escherichia coli</i> with the BD Phoenix Automated System: Questionable Utility of Cephalothin as a Predictor of Cephalexin Susceptibility","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotics Pharmacokinetics and Efficacy","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Cephalosporin; Escherichia coli; Microbiology; Enterobacteriaceae; Biology; Antibiotics; Genetics; Gene","score_opus":0.033813941559171855,"score_gpt":0.3436079593468254,"score_spread":0.3097940177876536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170220195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99029446,0.0013629207,0.0052961768,0.00065717124,0.000033931326,0.00004149649,0.00032828256,0.00020865834,0.0017769092],"genre_scores_gemma":[0.9948895,0.00021486719,0.004491454,0.0001259874,0.000015782472,0.000007198656,0.000116437644,0.00001139115,0.00012734722],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960847,0.0018305386,0.0005403262,0.0002993583,0.0010662235,0.00017888958],"domain_scores_gemma":[0.98924994,0.0058287694,0.001949649,0.00066865905,0.00186347,0.00043938655],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029642927,0.00036821474,0.000517616,0.0011534953,0.0001795706,0.00080106995,0.0004134558,0.0005045095,0.0005587941],"category_scores_gemma":[0.011950531,0.00030251563,0.00022531106,0.0008194638,0.0005386642,0.00051652576,0.00022962643,0.0005784988,0.00043629194],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013935268,0.00015297104,0.90944844,0.00011555034,0.000043572014,0.00041908474,0.00020918177,0.00040174008,0.050674453,0.00011259977,0.0008227373,0.036206134],"study_design_scores_gemma":[0.000088204935,0.0025475393,0.7817113,0.00015560644,0.00014581741,0.008399676,0.00038449018,0.013287479,0.19015923,0.0003708902,0.0026840717,0.00006568833],"about_ca_topic_score_codex":0.0026563357,"about_ca_topic_score_gemma":0.0022106133,"teacher_disagreement_score":0.0029642927,"about_ca_system_score_codex":0.00032569314,"about_ca_system_score_gemma":0.0004632346,"threshold_uncertainty_score":0.015676856},"labels":[],"label_agreement":null},{"id":"W2170321757","doi":"10.1128/jcm.05100-11","title":"Divergent Rifamycin Susceptibilities of Clostridium difficile Strains in Canada and Italy and Predictive Accuracy of Rifampin Etest for Rifamycin Resistance","year":2011,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Jewish General Hospital","funders":"","keywords":"Etest; Rifamycin; Microbiology; Agar dilution; Clostridium difficile; Agar; Biology; Cefoxitin; rpoB; Antibiotics; Virology; Minimum inhibitory concentration; Bacteria; Genetics; Staphylococcus aureus","score_opus":0.07311696792193034,"score_gpt":0.3411210759489483,"score_spread":0.26800410802701796,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170321757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998071,0.0004476517,0.000088905465,0.00007348435,0.0000032208902,0.000009158694,0.00025628167,0.0000072014564,0.001043085],"genre_scores_gemma":[0.9986552,0.00030595204,0.000297603,0.000047087407,0.0000035078945,0.000004268625,0.00046186984,0.0000051265815,0.00021951906],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991998,0.00012290553,0.000048224407,0.00013579876,0.00029002992,0.00020320513],"domain_scores_gemma":[0.998214,0.0003586532,0.00036291208,0.00010551749,0.00063072453,0.000328195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008116632,0.000429582,0.00035512328,0.0013955827,0.0005663934,0.00068523304,0.00050860306,0.0003079303,0.00055657193],"category_scores_gemma":[0.0047043026,0.0002543462,0.00025231444,0.0013132404,0.000607437,0.00013888924,0.0003869156,0.0004332648,0.0001907886],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007122999,0.00004196078,0.9817879,0.000027960994,0.000042150605,0.0003588317,0.00063482544,0.00027612387,0.0055727856,0.000063899366,0.00031176818,0.010169551],"study_design_scores_gemma":[0.000015775477,0.00008120005,0.99652773,0.00002271803,0.00003242881,0.0004549861,0.0003854235,0.00043459257,0.0011535325,0.000017040076,0.00086331554,0.000011385864],"about_ca_topic_score_codex":0.71252084,"about_ca_topic_score_gemma":0.79984707,"teacher_disagreement_score":0.28747916,"about_ca_system_score_codex":0.004301309,"about_ca_system_score_gemma":0.0034110036,"threshold_uncertainty_score":0.57834435},"labels":[],"label_agreement":null},{"id":"W2170380549","doi":"10.1128/jcm.41.10.4642-4646.2003","title":"Human Metapneumovirus Infection in the Canadian Population","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":166,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; Queen Elizabeth II Health Sciences Centre; Saskatchewan Health; Canadian Science Centre for Human and Animal Health","funders":"","keywords":"Human metapneumovirus; Bronchiolitis; Bronchitis; Population; Pneumonia; Biology; Metapneumovirus; Respiratory tract infections; Public health; Epidemiology; Virus; Virology; Internal medicine; Medicine; Respiratory system; Pathology; Environmental health","score_opus":0.16696457667362344,"score_gpt":0.49359161894206044,"score_spread":0.326627042268437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170380549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98682225,0.0025757416,0.00016242581,0.0007166898,0.000031742966,0.00008321263,0.0029431412,0.000029304438,0.0066355355],"genre_scores_gemma":[0.9962114,0.0017931152,0.00020898187,0.00019749434,0.000015092841,0.000018703513,0.00080472743,0.000003904619,0.00074666727],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99940944,0.000027210412,0.000020072617,0.00009583254,0.00028082743,0.0001667463],"domain_scores_gemma":[0.9994779,0.000017336712,0.0000655196,0.000015568652,0.00027294364,0.00015070636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037590595,0.00033365234,0.00033053348,0.0015101058,0.0035217565,0.0009161906,0.0006869124,0.0003690381,0.0019705456],"category_scores_gemma":[0.0011689629,0.00031566524,0.00040827424,0.0032361862,0.0005997856,0.00029233922,0.0006038734,0.00048097665,0.00019426688],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068030444,0.00003094026,0.98202574,0.00007265649,0.000047999194,0.00029015238,0.0010654674,0.00013270343,0.0008707332,0.00019579254,0.0024638725,0.012736007],"study_design_scores_gemma":[0.0000091825395,0.00004135409,0.9960337,0.00003143288,0.000024238863,0.0002725432,0.0008949281,0.00019087356,0.000073765455,0.00003863358,0.0023744304,0.000014885385],"about_ca_topic_score_codex":0.9930397,"about_ca_topic_score_gemma":0.99313676,"teacher_disagreement_score":0.015462581,"about_ca_system_score_codex":0.015462581,"about_ca_system_score_gemma":0.019063067,"threshold_uncertainty_score":0.11218935},"labels":[],"label_agreement":null},{"id":"W2170483053","doi":"10.1128/jcm.40.7.2632-2634.2002","title":"Accuracy of Results Obtained by Performing a Second Ligase Chain Reaction Assay and PCR Analysis on Urine Samples with Positive or Near-Cutoff Results in the LCx Test for <i>Chlamydia trachomatis</i>","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Chlamydia trachomatis; Ligase chain reaction; Chlamydia; Chlamydiales; Nucleic Acid Amplification Tests; Urine; Chlamydiaceae; Reproducibility; Polymerase chain reaction; Biology; Virology; Medicine; Chromatography; Internal medicine; Chemistry; Immunology; Multiplex polymerase chain reaction; Genetics","score_opus":0.04837433130097099,"score_gpt":0.35148074922809003,"score_spread":0.303106417927119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170483053","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96778595,0.0030440781,0.021884922,0.0001563679,0.00020216953,0.000077602126,0.0005134,0.00056165975,0.005773823],"genre_scores_gemma":[0.9859831,0.0002930593,0.0122203,0.00013630147,0.000036357756,0.00003493418,0.0005015617,0.00005526708,0.0007391903],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9773955,0.006977213,0.0036789181,0.004131864,0.0065189525,0.001297467],"domain_scores_gemma":[0.97622347,0.011278464,0.0037329807,0.0030643032,0.0051956964,0.00050520303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015020495,0.0010066292,0.0008114854,0.0022973118,0.00040875148,0.0020128503,0.00088596315,0.0012199793,0.0008656609],"category_scores_gemma":[0.044868406,0.0005783544,0.0009954012,0.00086842687,0.0013505484,0.00093743793,0.0008838957,0.0005945219,0.0013767699],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022264144,0.000132967,0.8707087,0.0003643552,0.00047029267,0.00033028095,0.0007843382,0.0010255028,0.071532175,0.00017804818,0.0004228763,0.05182407],"study_design_scores_gemma":[0.00007295953,0.0012822852,0.8424415,0.00018714991,0.0005107979,0.0028797083,0.00043502083,0.0126020685,0.13701347,0.0002934991,0.0022107712,0.0000706796],"about_ca_topic_score_codex":0.0031229774,"about_ca_topic_score_gemma":0.0035484387,"teacher_disagreement_score":0.015020495,"about_ca_system_score_codex":0.0008668503,"about_ca_system_score_gemma":0.0005577985,"threshold_uncertainty_score":0.0794369},"labels":[],"label_agreement":null},{"id":"W2170501009","doi":"10.1128/jcm.42.4.1753-1755.2004","title":"First International Quality Assurance Study on the Rapid Detection of Viral Agents of Bioterrorism","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Statens Serum Institut; Rijksinstituut voor Volksgezondheid en Milieu; Aristotle University of Thessaloniki; Univerza v Ljubljani; Universität Wien; University College Dublin; Health Canada; Robert Koch Institut; Philipps-Universität Marburg","keywords":"Virology; Lassa virus; Quality assurance; Virus; Medicine; Biology; External quality assessment; Pathology","score_opus":0.0730905584144594,"score_gpt":0.4044362835316065,"score_spread":0.3313457251171471,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170501009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9840695,0.001353511,0.0062171286,0.0007015674,0.0001372626,0.0007164755,0.0006370278,0.00010386194,0.0060635954],"genre_scores_gemma":[0.99415886,0.00021285757,0.0027977666,0.0009197526,0.000105909625,0.0002735422,0.00077090954,0.000035783534,0.0007245782],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98089004,0.0122634275,0.0010910465,0.0019970834,0.00266106,0.0010973101],"domain_scores_gemma":[0.94163877,0.016031183,0.0097952755,0.009322916,0.017756414,0.005455543],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018687628,0.0016631228,0.0006899356,0.0013337795,0.0022806688,0.0019131511,0.0007978144,0.0015522181,0.0013715599],"category_scores_gemma":[0.027601333,0.0005962904,0.00065363676,0.0010415363,0.001992539,0.0009480972,0.0011294569,0.0019552454,0.00052694045],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005281892,0.005685636,0.93907976,0.00025437374,0.0005709094,0.00043188123,0.006282166,0.00026552335,0.006878973,0.00069625035,0.0027296555,0.0318431],"study_design_scores_gemma":[0.0013712676,0.027240833,0.9336318,0.00018449748,0.0007198508,0.0017780731,0.0045715137,0.00076190615,0.009504886,0.00032220152,0.019823784,0.00008942312],"about_ca_topic_score_codex":0.0069810594,"about_ca_topic_score_gemma":0.004812892,"teacher_disagreement_score":0.018687628,"about_ca_system_score_codex":0.0012340536,"about_ca_system_score_gemma":0.0016360078,"threshold_uncertainty_score":0.09883076},"labels":[],"label_agreement":null},{"id":"W2170921364","doi":"10.1128/jcm.40.11.4021-4029.2002","title":"Genetic Characterization and Sequence Heterogeneity of a Canadian Isolate of Swine Hepatitis E Virus","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis Viruses Studies and Epidemiology","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Health Canada","keywords":"Hepatitis E virus; ORFS; Biology; Virology; Genotype; Phylogenetic tree; Strain (injury); Sequence analysis; Caliciviridae; Nucleic acid sequence; Virus; Genetics; Open reading frame; Gene; Peptide sequence; Viral disease","score_opus":0.13519395415262506,"score_gpt":0.36630154906090207,"score_spread":0.231107594908277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170921364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979559,0.00014203641,0.0001964487,0.000035165765,0.000010259111,0.000025363564,0.000497474,0.0000049428563,0.0011323978],"genre_scores_gemma":[0.9945045,0.00026319377,0.0010566014,0.00010901388,0.000013829035,0.000014350494,0.0029275538,0.000009559252,0.0011013824],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9997733,0.0000073552246,0.000009393517,0.00004905525,0.00007984817,0.00008095807],"domain_scores_gemma":[0.9996394,0.000043275068,0.000035064575,0.000015888445,0.00014721825,0.00011916948],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007475414,0.00043242038,0.0002518895,0.0006703582,0.0010853109,0.00050984684,0.00025675516,0.00033548698,0.00059511827],"category_scores_gemma":[0.0005221863,0.00016995212,0.000293574,0.0008915038,0.00042757293,0.00013685222,0.00023915681,0.0004301858,0.00023945022],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006312426,0.0002141224,0.11653114,0.00015630342,0.000067041954,0.0034108397,0.0027570056,0.00042946235,0.86090577,0.00030321395,0.0006412477,0.013952665],"study_design_scores_gemma":[0.000046866793,0.0005593977,0.9612885,0.000026606658,0.000090749985,0.0051891035,0.00257122,0.00093543634,0.01965354,0.00008628857,0.009488055,0.000064220425],"about_ca_topic_score_codex":0.5764445,"about_ca_topic_score_gemma":0.6344893,"teacher_disagreement_score":0.4235555,"about_ca_system_score_codex":0.002387239,"about_ca_system_score_gemma":0.0025707262,"threshold_uncertainty_score":0.8520998},"labels":[],"label_agreement":null},{"id":"W2171094800","doi":"10.1128/jcm.00259-09","title":"<i>Leishmania</i> OligoC-TesT as a Simple, Rapid, and Standardized Tool for Molecular Diagnosis of Cutaneous Leishmaniasis in Peru","year":2009,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University Health Network","funders":"","keywords":"Leishmaniasis; Cutaneous leishmaniasis; Leishmania; Dipstick; Confidence interval; Medicine; Kinetoplast; Polymerase chain reaction; Leishmania major; Dermatology; Internal medicine; Biology; Virology; Pathology; Parasite hosting; DNA; Urine","score_opus":0.032146619231724086,"score_gpt":0.38177964605775766,"score_spread":0.3496330268260336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171094800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98790747,0.0039001813,0.005484651,0.00025822976,0.000014339893,0.0001422988,0.0001573918,0.0000761309,0.0020593214],"genre_scores_gemma":[0.9929275,0.00066235755,0.0059464527,0.00008588883,0.000017940203,0.000049096212,0.00017116858,0.000006150588,0.0001334511],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830073,0.0011617751,0.00007962016,0.00014263629,0.00024955787,0.00006575159],"domain_scores_gemma":[0.99874485,0.00044970863,0.00039312887,0.00008647727,0.00025160497,0.00007420144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015443822,0.00034238253,0.00022464372,0.00080267916,0.00018908228,0.00061629806,0.00020613316,0.0003379999,0.0005179405],"category_scores_gemma":[0.0033097428,0.00021752367,0.0001907666,0.00045543918,0.00059531594,0.00027090835,0.00039613555,0.0003089887,0.00017383165],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055943185,0.00011827918,0.89518416,0.000337913,0.00009845559,0.00091776345,0.0005649689,0.0007914849,0.056855526,0.00013188139,0.00042338483,0.044016827],"study_design_scores_gemma":[0.000087862405,0.0024950833,0.95842236,0.0001673641,0.00021799226,0.008573509,0.0005641384,0.0069074905,0.016116714,0.00013578346,0.00625394,0.000057691293],"about_ca_topic_score_codex":0.003715762,"about_ca_topic_score_gemma":0.0033855252,"teacher_disagreement_score":0.003715762,"about_ca_system_score_codex":0.0002728098,"about_ca_system_score_gemma":0.00035188266,"threshold_uncertainty_score":0.008167565},"labels":[],"label_agreement":null},{"id":"W2171235546","doi":"10.1128/jcm.03411-13","title":"Development of a Two-Step Multiplex PCR Assay for Typing of Capsular Polysaccharide Synthesis Gene Clusters of Streptococcus suis","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Streptococcus suis; Multiplex polymerase chain reaction; Multiplex; Typing; Biology; Microbiology; Streptococcaceae; Polymerase chain reaction; Gene; Genetics; Antibiotics","score_opus":0.0676912081553916,"score_gpt":0.3840859041200562,"score_spread":0.31639469596466463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171235546","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30678427,0.002298801,0.6808428,0.00038451125,0.00043486024,0.002199193,0.0012592301,0.0018996667,0.003896535],"genre_scores_gemma":[0.27063966,0.00094583543,0.72062,0.00027308078,0.00009565508,0.0015396066,0.0014900885,0.0000895385,0.00430653],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99681747,0.00084458716,0.00021645993,0.000704641,0.0011957256,0.00022112361],"domain_scores_gemma":[0.9982936,0.00066033745,0.00022824678,0.00017214911,0.00045956607,0.00018608362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022169421,0.0014434858,0.0008804292,0.001710571,0.00031770347,0.00090315024,0.0010498456,0.0011325171,0.000913875],"category_scores_gemma":[0.003106664,0.0009829402,0.0005341144,0.000554992,0.0004298919,0.0006734366,0.00083433907,0.0013699399,0.00091341836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019088869,0.00024473784,0.0030319022,0.00014698412,0.000037978843,0.00008814596,0.0001231536,0.0007578368,0.9553293,0.00033246336,0.00040246258,0.03931424],"study_design_scores_gemma":[0.000064574175,0.0017797276,0.008174217,0.00006910865,0.00010454001,0.00091828365,0.00009115064,0.029959923,0.9496509,0.0003509443,0.008714368,0.00012244843],"about_ca_topic_score_codex":0.00060570583,"about_ca_topic_score_gemma":0.0011756753,"teacher_disagreement_score":0.0022169421,"about_ca_system_score_codex":0.00036663515,"about_ca_system_score_gemma":0.00061625603,"threshold_uncertainty_score":0.011724412},"labels":[],"label_agreement":null},{"id":"W2171584441","doi":"10.1128/jcm.43.1.127-131.2005","title":"Ability of New APTIMA CT and APTIMA GC Assays To Detect <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> in Male Urine and Urethral Swabs","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Nucleic Acid Amplification Tests; Multiplex; Asymptomatic; Urine; Chlamydiales; Gonorrhea; Medicine; Chlamydiaceae; Chlamydia; False positive paradox; Virology; Biology; Microbiology; Internal medicine; Immunology","score_opus":0.03381639644157808,"score_gpt":0.3609494889015968,"score_spread":0.3271330924600187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171584441","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953858,0.0011878939,0.0020125778,0.00007847123,0.000026622343,0.000045758556,0.00017203938,0.00005839406,0.0010324375],"genre_scores_gemma":[0.9945668,0.00021947121,0.004277429,0.00008987123,0.000026905116,0.000033883345,0.00028131926,0.000005995356,0.0004984516],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99746716,0.000876034,0.00017558658,0.00050146633,0.00083041674,0.00014930988],"domain_scores_gemma":[0.9952076,0.0019253385,0.000891985,0.00035210323,0.0011165534,0.00050641975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024641755,0.0006029391,0.000398409,0.0008900164,0.00024382307,0.0004580129,0.0003607066,0.0006592997,0.0005857822],"category_scores_gemma":[0.0052501434,0.00037091554,0.000316852,0.0003211927,0.0005657179,0.00037327714,0.00033142173,0.0006295797,0.00025971181],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003918764,0.00082453416,0.8565664,0.00015743189,0.00024250694,0.00024216212,0.0008673176,0.0010669216,0.07110921,0.000117807635,0.0006233112,0.0642636],"study_design_scores_gemma":[0.00035272687,0.0134109985,0.89547676,0.000052049694,0.00034986847,0.007000867,0.00033940194,0.01375736,0.06566469,0.00018445302,0.0033193235,0.0000914503],"about_ca_topic_score_codex":0.0011277953,"about_ca_topic_score_gemma":0.002168247,"teacher_disagreement_score":0.0024641755,"about_ca_system_score_codex":0.000298651,"about_ca_system_score_gemma":0.00018051168,"threshold_uncertainty_score":0.0130319595},"labels":[],"label_agreement":null},{"id":"W2171690966","doi":"10.1128/jcm.00013-07","title":"Detection of <i>Chlamydia trachomatis</i> and <i>Neisseria gonorrhoeae</i> Infections in North American Women by Testing SurePath Liquid-Based Pap Specimens in APTIMA Assays","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Chlamydia trachomatis; Neisseria gonorrhoeae; Sexually transmitted disease; Medicine; Neisseria; Virology; Chlamydia; Trichomonas vaginalis; Biology; Gynecology; Microbiology; Syphilis; Immunology; Bacteria; Human immunodeficiency virus (HIV)","score_opus":0.032886879763060005,"score_gpt":0.3657568795375518,"score_spread":0.33286999977449183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171690966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991936,0.000188185,0.00010508702,0.000032005442,0.000003158089,0.000018499037,0.00006708875,0.0000056921976,0.0003866109],"genre_scores_gemma":[0.99899524,0.000166484,0.0004305478,0.00007608815,0.000008990338,0.00002033563,0.0001386289,0.000001240026,0.00016259981],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99916565,0.00025390496,0.00006697456,0.00016358761,0.00025158262,0.00009841102],"domain_scores_gemma":[0.99910337,0.0002848385,0.00025695813,0.00005606588,0.00016757236,0.00013127553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00097132666,0.00027027164,0.00020743838,0.00074792,0.00046214453,0.00038785604,0.00025254212,0.00039424625,0.0006040858],"category_scores_gemma":[0.0019294618,0.00041033656,0.00017198741,0.0004745468,0.0005058436,0.00029148898,0.00031729546,0.0002925383,0.0001626562],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010514546,0.0000924331,0.9929421,0.000017384817,0.000015715179,0.000107074266,0.00029696937,0.00004256891,0.0030814267,0.0000115260345,0.00013094427,0.00315666],"study_design_scores_gemma":[0.000010399124,0.00028255285,0.9975847,0.000008277829,0.000017871587,0.000579283,0.00027056038,0.00023589157,0.0006863252,0.000009421743,0.0003096735,0.0000050536587],"about_ca_topic_score_codex":0.015917554,"about_ca_topic_score_gemma":0.019280715,"teacher_disagreement_score":0.015917554,"about_ca_system_score_codex":0.00039715954,"about_ca_system_score_gemma":0.00039607234,"threshold_uncertainty_score":0.03164977},"labels":[],"label_agreement":null},{"id":"W2171876483","doi":"10.1128/jcm.00362-11","title":"Cutaneous Diphtheria in the Urban Poor Population of Vancouver, British Columbia, Canada: a 10-Year Review","year":2011,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia; Providence Health Care; University of Manitoba; Public Health Agency of Canada; University of Toronto","funders":"","keywords":"Corynebacterium diphtheriae; Diphtheria; Multilocus sequence typing; Diphtheria toxin; Population; Staphylococcus aureus; Streptococcus pyogenes; Medicine; Virology; Microbiology; Biology; Environmental health; Genetics; Genotype; Vaccination","score_opus":0.03213098950335365,"score_gpt":0.31731835983318396,"score_spread":0.2851873703298303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171876483","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004937544,0.99877733,0.000019873089,0.00013749869,0.000051911185,0.0000049829673,0.000112138856,0.0000031922941,0.00039923415],"genre_scores_gemma":[0.002230817,0.9972709,0.00006158948,0.0000765454,0.00002803825,0.000004858212,0.00011804949,0.0000011878092,0.00020802912],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.999451,0.000049377224,0.00014702271,0.000080315476,0.00021569409,0.000056593184],"domain_scores_gemma":[0.9971085,0.0008216312,0.0005782558,0.00004856126,0.0012253559,0.0002176911],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00094274885,0.0006876758,0.0016979857,0.008146364,0.0007370713,0.0018010623,0.0014328901,0.000876775,0.0024473288],"category_scores_gemma":[0.0026773366,0.00044254336,0.00040555792,0.016008185,0.00077973603,0.0009032811,0.00062601455,0.0006408643,0.00060717046],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000114793875,0.00002850396,0.0048370026,0.06683655,0.00027151903,0.0009649349,0.0003767363,0.00020155273,0.0004067336,0.00036357666,0.03233741,0.89326066],"study_design_scores_gemma":[0.00004625228,0.00016239352,0.07599167,0.08248808,0.0019889823,0.011248275,0.0013409368,0.00016836262,0.0004939414,0.00039601856,0.82557327,0.00010174158],"about_ca_topic_score_codex":0.31098625,"about_ca_topic_score_gemma":0.5407133,"teacher_disagreement_score":0.6890137,"about_ca_system_score_codex":0.0045271013,"about_ca_system_score_gemma":0.013561978,"threshold_uncertainty_score":0.6183522},"labels":[],"label_agreement":null},{"id":"W2171905872","doi":"10.1128/jcm.00128-12","title":"High Mortality Associated with Catabacter hongkongensis Bacteremia","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bacteremia; Microbiology; Medicine; Internal medicine; Sepsis; Gastroenterology; Biology; Antibiotics","score_opus":0.05913218454231848,"score_gpt":0.35152098319327035,"score_spread":0.29238879865095185,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171905872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983714,0.0005437529,0.00018886747,0.00006175372,0.000019015837,0.0000090717695,0.00007807132,0.000017741519,0.00071023824],"genre_scores_gemma":[0.9995913,0.00016489322,0.000036638514,0.000024908215,0.000015826421,0.0000026700181,0.00007023792,0.0000014267869,0.000092144015],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9997564,0.000040315754,0.000029431263,0.000040758394,0.00004087338,0.00009220714],"domain_scores_gemma":[0.99931383,0.00008985922,0.00017294954,0.000054196465,0.00012261118,0.00024653724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014719157,0.0003274869,0.00037714915,0.00049187423,0.0007449658,0.0004153407,0.00019798285,0.0004583153,0.0012851831],"category_scores_gemma":[0.0008363473,0.00016261,0.00026759223,0.00038615102,0.00039218008,0.00022018922,0.00043812912,0.00044891558,0.00027999093],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010662876,0.000017123617,0.9925483,0.000017336075,0.000024800807,0.0044018147,0.000101928264,0.00004513077,0.0009967089,0.000018041716,0.00014608014,0.0015761226],"study_design_scores_gemma":[0.000008902745,0.0001960155,0.98160857,0.000019452487,0.000031834898,0.016469382,0.00042745736,0.00028319526,0.00050895655,0.00004655044,0.00038688365,0.000012808515],"about_ca_topic_score_codex":0.005188256,"about_ca_topic_score_gemma":0.0046104956,"teacher_disagreement_score":0.005188256,"about_ca_system_score_codex":0.0004981706,"about_ca_system_score_gemma":0.00053090614,"threshold_uncertainty_score":0.0103161335},"labels":[],"label_agreement":null},{"id":"W2172006041","doi":"10.1128/jcm.43.12.5860-5864.2005","title":"Analysis of a Uropathogenic <i>Escherichia coli</i> Clonal Group by Multilocus Sequence Typing","year":2005,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":249,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Multilocus sequence typing; Housekeeping gene; Biology; Pulsed-field gel electrophoresis; Typing; Microbiology; Escherichia coli; Genetics; Strain (injury); Gene; Genotype","score_opus":0.034781492614585484,"score_gpt":0.36866654641101027,"score_spread":0.3338850537964248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172006041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928456,0.0003928589,0.005890232,0.000024949693,0.000007337904,0.000059336526,0.00036127042,0.000020705396,0.00039780833],"genre_scores_gemma":[0.98182136,0.0004301136,0.016253084,0.000058306163,0.000018875628,0.000034772533,0.0011059961,0.000012234301,0.0002652399],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99955827,0.000074172254,0.000056035595,0.000113424096,0.0001324755,0.00006564978],"domain_scores_gemma":[0.9993137,0.00017998453,0.00025456163,0.000039048013,0.00013634449,0.00007626078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040844336,0.00026444375,0.00028201175,0.00089064933,0.00016854198,0.00046204278,0.00013338019,0.00027361547,0.00038825595],"category_scores_gemma":[0.00084659393,0.000081343984,0.00023066589,0.00064160564,0.00011528176,0.00025408686,0.00030949168,0.00019546213,0.00015781938],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021156776,0.00010409287,0.10344214,0.00012811863,0.000049735787,0.00021096614,0.00013999334,0.00026386493,0.87746084,0.00008252891,0.000073459734,0.017832689],"study_design_scores_gemma":[0.000019871424,0.0011225492,0.66034055,0.000055901175,0.00018704834,0.0022666084,0.0004403888,0.0035458866,0.32842237,0.00015394016,0.0034108576,0.000034030527],"about_ca_topic_score_codex":0.0010482465,"about_ca_topic_score_gemma":0.00078302564,"teacher_disagreement_score":0.0010482465,"about_ca_system_score_codex":0.000098110446,"about_ca_system_score_gemma":0.00016003045,"threshold_uncertainty_score":0.0021600723},"labels":[],"label_agreement":null},{"id":"W2172211106","doi":"10.1128/jcm.41.6.2358-2366.2003","title":"Devices for Rapid Diagnosis of Malaria: Evaluation of Prototype Assays That Detect <i>Plasmodium falciparum</i> Histidine-Rich Protein 2 and a <i>Plasmodium vivax</i> -Specific Antigen","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Plasmodium falciparum; Plasmodium vivax; Malaria; Virology; Antigen; Biology; Giemsa stain; Rapid diagnostic test; Antibody; Immunology","score_opus":0.09374356631974777,"score_gpt":0.3719938866028342,"score_spread":0.27825032028308644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172211106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783014,0.00229848,0.016346056,0.00013510333,0.00013062982,0.001054193,0.0005711125,0.00026118825,0.0009018187],"genre_scores_gemma":[0.94934577,0.0013042496,0.046442993,0.00015810985,0.000071734474,0.00058773626,0.0012309444,0.000018667,0.0008398692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981324,0.0007122918,0.00012440546,0.00026947408,0.0006619867,0.00009937271],"domain_scores_gemma":[0.9981495,0.0009071454,0.00028687748,0.00013025275,0.0003863231,0.00013989868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026158479,0.0009978005,0.0005184616,0.0007683006,0.00022645162,0.0006767117,0.0010118696,0.0009395593,0.00077243434],"category_scores_gemma":[0.0039597754,0.000412324,0.00052187796,0.000417804,0.00043737027,0.00048083384,0.00051292777,0.00048544334,0.00020159302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013217172,0.0031037102,0.09391636,0.001621227,0.00039894466,0.0009196783,0.0010383682,0.003088828,0.7098938,0.000661307,0.002140377,0.17000027],"study_design_scores_gemma":[0.0032220446,0.18663746,0.22277728,0.00020731831,0.0008167452,0.014855714,0.0008782681,0.022905663,0.5307595,0.00041899047,0.016106075,0.0004149416],"about_ca_topic_score_codex":0.00060830486,"about_ca_topic_score_gemma":0.0007271861,"teacher_disagreement_score":0.0026158479,"about_ca_system_score_codex":0.00039054875,"about_ca_system_score_gemma":0.0003331066,"threshold_uncertainty_score":0.013834119},"labels":[],"label_agreement":null},{"id":"W2176543502","doi":"10.1128/jcm.02289-15","title":"Epidemiologic and Genotypic Review of Carbapenemase-Producing Organisms in British Columbia, Canada, between 2008 and 2014","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital; Providence Health Care; Royal Jubilee Hospital; Island Health; University of British Columbia; Surrey Memorial Hospital; Fraser Health; Vancouver Coastal Health; Public Health Agency of Canada; Vancouver General Hospital; Provincial Health Services Authority","funders":"","keywords":"Multilocus sequence typing; Pulsed-field gel electrophoresis; Biology; Klebsiella pneumoniae; Plasmid; Typing; Microbiology; Genotype; Molecular epidemiology; Enterobacter cloacae; Restriction fragment length polymorphism; Genetics; Escherichia coli; Gene","score_opus":0.03299011750846073,"score_gpt":0.3155995310237739,"score_spread":0.2826094135153132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2176543502","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6850637,0.21770425,0.0009462564,0.0030178768,0.00031261664,0.00042829133,0.0701333,0.00017359213,0.022220101],"genre_scores_gemma":[0.8262439,0.14276332,0.0014470057,0.0013546493,0.00009940127,0.00014634315,0.022162978,0.000039859427,0.005742616],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989066,0.000056834124,0.0001746174,0.00015380008,0.00051281176,0.00019547605],"domain_scores_gemma":[0.9950164,0.00025779285,0.000670816,0.000063131854,0.0035682993,0.000423666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005126054,0.0005558157,0.0004891127,0.0069960593,0.0020381254,0.0012088484,0.0012891766,0.0003510808,0.0018997587],"category_scores_gemma":[0.0026373847,0.00037074392,0.00032421786,0.014754087,0.00062516314,0.000345972,0.0006214106,0.0005223677,0.00026579178],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015894248,0.000050165425,0.90419805,0.0019955179,0.00015366908,0.0012889501,0.0013215701,0.00023929641,0.0009408085,0.00014511404,0.021154208,0.06835375],"study_design_scores_gemma":[0.0000043090804,0.000028054606,0.97550935,0.0010273338,0.00011028169,0.0011331984,0.0016169737,0.00013466751,0.000196691,0.000020015967,0.020194845,0.00002416849],"about_ca_topic_score_codex":0.9887117,"about_ca_topic_score_gemma":0.99146265,"teacher_disagreement_score":0.020400552,"about_ca_system_score_codex":0.020400552,"about_ca_system_score_gemma":0.033220597,"threshold_uncertainty_score":0.14801705},"labels":[],"label_agreement":null},{"id":"W2179686064","doi":"10.1128/jcm.01044-15","title":"A Single Nucleotide Polymorphism at the TaqMan Probe-Binding Site Impedes Real-Time Reverse Transcription-PCR-Based Detection of Norovirus GII.4 Sydney","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"TaqMan; Norovirus; Single-nucleotide polymorphism; Genotype; Biology; Molecular biology; SNP; Virology; Caliciviridae; Reverse transcriptase; Real-time polymerase chain reaction; Genetics; Polymerase chain reaction; Gene; Virus","score_opus":0.08248568872307868,"score_gpt":0.36238742844955185,"score_spread":0.27990173972647314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179686064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.76491904,0.0013427134,0.22418992,0.00084862206,0.0006831159,0.0005833231,0.0007071295,0.0013401764,0.005385833],"genre_scores_gemma":[0.70393413,0.0006759007,0.2829604,0.0010225037,0.00008470416,0.0013355358,0.0014313451,0.0001800669,0.008375463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99398625,0.0019355762,0.0006959636,0.0015279403,0.0014325982,0.00042168977],"domain_scores_gemma":[0.99768996,0.0010994774,0.00041413514,0.00026792896,0.00034368093,0.0001848557],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026506875,0.0009337798,0.001354739,0.0008348209,0.0005319306,0.00085985207,0.0010932954,0.0019120559,0.0030903793],"category_scores_gemma":[0.0048959414,0.0017954198,0.00076532626,0.00061744393,0.0015935132,0.0005532119,0.0005998716,0.0020741522,0.0011725946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014862917,0.000058248723,0.0012382393,0.00007046806,0.00002007093,0.00011978381,0.000092411625,0.000193166,0.9950982,0.0005477783,0.0001572942,0.0022557273],"study_design_scores_gemma":[0.00014884023,0.0009385782,0.010187431,0.00005902725,0.00011069848,0.0010543851,0.00006927387,0.008591151,0.9688131,0.0008028177,0.009169559,0.000055177716],"about_ca_topic_score_codex":0.0012916083,"about_ca_topic_score_gemma":0.0051199603,"teacher_disagreement_score":0.0030903793,"about_ca_system_score_codex":0.001034723,"about_ca_system_score_gemma":0.0017969538,"threshold_uncertainty_score":0.014018357},"labels":[],"label_agreement":null},{"id":"W2179986063","doi":"10.1128/jcm.01850-15","title":"Direct Repeat Unit ( <i>dru</i> ) Typing of Methicillin-Resistant Staphylococcus pseudintermedius from Dogs and Cats","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Staphylococcus pseudintermedius; Multilocus sequence typing; Typing; Pulsed-field gel electrophoresis; Biology; Microbiology; Genetics; Staphylococcus; Genotype; Staphylococcus aureus; Gene","score_opus":0.08881878874847851,"score_gpt":0.3838677347229524,"score_spread":0.29504894597447384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179986063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99934846,0.00012488436,0.0002629695,0.0000061901846,0.0000015160589,0.000013700416,0.00011357811,0.0000024920728,0.00012619434],"genre_scores_gemma":[0.9972332,0.00015669149,0.0016834609,0.000017061751,0.0000051131537,0.000014365736,0.0008031836,0.0000024756598,0.00008447174],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99922,0.00016806327,0.00014835848,0.00017531034,0.00022590446,0.00006228598],"domain_scores_gemma":[0.999146,0.00023512049,0.00026670733,0.000080263555,0.00015327855,0.00011863226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007347937,0.00027388195,0.00038857717,0.001325367,0.0002883578,0.00060788874,0.00021592637,0.00028890185,0.00023354478],"category_scores_gemma":[0.0014045279,0.00018347395,0.00026462937,0.00071926764,0.0002610484,0.0002706755,0.00039891654,0.00018110959,0.00009796479],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040522718,0.000135706,0.87186635,0.0001481186,0.00012543217,0.0009410207,0.00105688,0.0004935818,0.10458128,0.00006074661,0.00013044324,0.020055179],"study_design_scores_gemma":[0.000007745694,0.00040704638,0.9831267,0.000020390728,0.00005491642,0.0018562721,0.00038475526,0.0007171307,0.012741654,0.000020432599,0.0006503885,0.000012589503],"about_ca_topic_score_codex":0.0037078678,"about_ca_topic_score_gemma":0.006108498,"teacher_disagreement_score":0.0037078678,"about_ca_system_score_codex":0.00031962595,"about_ca_system_score_gemma":0.00024048163,"threshold_uncertainty_score":0.007372558},"labels":[],"label_agreement":null},{"id":"W2192893147","doi":"10.1128/jcm.02032-15","title":"Simplified Protocol for Carba NP Test for Enhanced Detection of Carbapenemase Producers Directly from Bacterial Cultures","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Microbiology; Bacilli; Biology; Clinical microbiology; Protocol (science); Bacterial protein; Microbiological culture; Bacteria; Medicine; Genetics","score_opus":0.04780136350398732,"score_gpt":0.39226918675162686,"score_spread":0.3444678232476395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2192893147","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.37004808,0.002700046,0.60464185,0.0003559969,0.0007782857,0.0063204137,0.0050216774,0.002638463,0.0074952086],"genre_scores_gemma":[0.2373223,0.001784182,0.733129,0.0004017738,0.00015784035,0.008009868,0.010649734,0.00034750617,0.008197838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968009,0.0008883447,0.00038733534,0.00070554984,0.00095407607,0.00026370294],"domain_scores_gemma":[0.9988728,0.0003231881,0.00011815187,0.00028925893,0.0003295065,0.000067094334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001320162,0.0013403064,0.0011716674,0.001039414,0.00035269358,0.00053485984,0.0009609982,0.0009255418,0.0039904206],"category_scores_gemma":[0.0017692408,0.00076745107,0.0007033478,0.00069553795,0.0004602482,0.00042293462,0.00085972226,0.0014342661,0.0030172982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011277937,0.000097856486,0.00042229457,0.00015935686,0.000014174013,0.000084666004,0.000036048998,0.00012504701,0.9948344,0.00008149685,0.00022204538,0.0038097745],"study_design_scores_gemma":[0.00008219266,0.0017252242,0.009309288,0.00005782203,0.00010845313,0.0015513512,0.00007618728,0.0034917407,0.9685744,0.00027223205,0.014660539,0.00009054023],"about_ca_topic_score_codex":0.0012097567,"about_ca_topic_score_gemma":0.0018110237,"teacher_disagreement_score":0.0039904206,"about_ca_system_score_codex":0.0002821785,"about_ca_system_score_gemma":0.00068682636,"threshold_uncertainty_score":0.013349235},"labels":[],"label_agreement":null},{"id":"W2194483671","doi":"10.1128/jcm.02407-15","title":"Role of Serologic and Molecular Diagnostic Assays in Identification and Management of Hepatitis C Virus Infection","year":2015,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Serology; Context (archaeology); Hepatitis C virus; Diagnostic test; Medicine; Immunology; Hepatitis C; Virology; Viral disease; Intensive care medicine; Virus; Biology; Antibody; Pediatrics","score_opus":0.10305419731711903,"score_gpt":0.4645037275473347,"score_spread":0.3614495302302157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2194483671","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006196534,0.99911255,0.000070167065,0.00022887386,0.00011187234,0.000002598003,0.000008281001,0.000003753171,0.00039990916],"genre_scores_gemma":[0.00042646527,0.99908364,0.00013787021,0.00009985709,0.00013270348,0.0000028041452,0.000011212217,6.822838e-7,0.00010477346],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994572,0.00013668137,0.00010990043,0.000071525246,0.000189988,0.00003468886],"domain_scores_gemma":[0.9987999,0.0007672468,0.00011899335,0.000029726642,0.00023187137,0.000052334333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011296318,0.0006743473,0.0014756416,0.0033007935,0.00025824513,0.0010991242,0.0008870021,0.0010986499,0.0022562353],"category_scores_gemma":[0.0022028973,0.00023474338,0.0006951685,0.002013082,0.0006621255,0.0012699709,0.000632544,0.0017911649,0.0012379823],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005104358,0.000055427787,0.000336622,0.018696321,0.00010698463,0.000222916,0.000068706555,0.00026942324,0.0007838043,0.0020890643,0.015767824,0.96155196],"study_design_scores_gemma":[0.000018230994,0.00014467067,0.001860995,0.013464569,0.00024537038,0.0032956705,0.000114842755,0.00015196647,0.0006324854,0.0025776676,0.97745615,0.000037385103],"about_ca_topic_score_codex":0.0010830815,"about_ca_topic_score_gemma":0.0013920624,"teacher_disagreement_score":0.0033007935,"about_ca_system_score_codex":0.00062379066,"about_ca_system_score_gemma":0.0011731661,"threshold_uncertainty_score":0.007547915},"labels":[],"label_agreement":null},{"id":"W2194614846","doi":"10.1128/jcm.02603-15","title":"Development and Validation of a PCR Assay To Detect the Prairie Epidemic Strain of Pseudomonas aeruginosa from Patients with Cystic Fibrosis","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Population Health Research Institute; University of Calgary","funders":"Cystic Fibrosis Canada","keywords":"Pseudomonas aeruginosa; Cystic fibrosis; Microbiology; Strain (injury); Biology; Pseudomonadaceae; Polymerase chain reaction; Virology; Bacteria; Gene; Genetics","score_opus":0.05583651467527417,"score_gpt":0.36768763239326574,"score_spread":0.31185111771799157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2194614846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8808805,0.001692184,0.10592548,0.000559099,0.00019887932,0.0035788636,0.0032358405,0.00046671438,0.0034624392],"genre_scores_gemma":[0.81904817,0.00085049344,0.16922262,0.0007529861,0.00008596624,0.0017314816,0.0062123253,0.000085817155,0.0020101692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99268275,0.0013657381,0.0005540405,0.0013996885,0.0034222344,0.0005755612],"domain_scores_gemma":[0.99554235,0.0014139444,0.0003593456,0.0004549198,0.0019643905,0.00026508424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0043927366,0.0010656199,0.0007925482,0.0017088556,0.00058172864,0.00093208614,0.0010714704,0.0012436665,0.0006396287],"category_scores_gemma":[0.0076429006,0.00060430955,0.00064802176,0.00095156464,0.0009167071,0.00038525843,0.0006159939,0.0012186599,0.00062594266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043598877,0.00084992533,0.0705931,0.00025448884,0.00009479582,0.00027586878,0.0008943521,0.0013588868,0.89258546,0.00026397596,0.00046507886,0.03192812],"study_design_scores_gemma":[0.00034595028,0.007163006,0.27611092,0.00019246149,0.0004931691,0.003593469,0.0013189133,0.021382311,0.6751713,0.00035436745,0.013721435,0.00015273123],"about_ca_topic_score_codex":0.014343777,"about_ca_topic_score_gemma":0.019527815,"teacher_disagreement_score":0.014343777,"about_ca_system_score_codex":0.00066958624,"about_ca_system_score_gemma":0.0018346118,"threshold_uncertainty_score":0.028520584},"labels":[],"label_agreement":null},{"id":"W2199172873","doi":"10.1128/jcm.02229-15","title":"Implementation of Next-Generation Sequencing for Hepatitis B Virus Resistance Testing and Genotyping in a Clinical Microbiology Laboratory","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; AIDS Vancouver; University of Toronto; University Health Network; University of British Columbia; Providence Health Care","funders":"","keywords":"Sanger sequencing; Genotyping; Biology; DNA sequencing; Hepatitis B virus; Clinical microbiology; Virology; Concordance; Massive parallel sequencing; Genotype; Genetics; Computational biology; Gene; Virus; Microbiology","score_opus":0.27155746691153126,"score_gpt":0.445555149825313,"score_spread":0.17399768291378176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2199172873","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22260216,0.0014329868,0.759848,0.0021866688,0.00036809724,0.0030241616,0.0005505354,0.003759567,0.006227791],"genre_scores_gemma":[0.24693632,0.00046378517,0.74908626,0.00078049337,0.000098390046,0.00087967986,0.0006304028,0.000153865,0.00097083783],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9801025,0.010406469,0.0016160057,0.0020312648,0.005185203,0.0006585347],"domain_scores_gemma":[0.99278647,0.002598072,0.0007546186,0.0015718845,0.0018674799,0.0004215844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013582759,0.00075419253,0.00083929,0.0014342538,0.0005575797,0.0021103625,0.0010684269,0.0010522142,0.0014930051],"category_scores_gemma":[0.009850345,0.00065773015,0.0008121735,0.00049570977,0.0008288323,0.0010614344,0.0015655563,0.001243738,0.0016336917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010422942,0.0013319587,0.041721836,0.00050317455,0.00017753827,0.0011997378,0.0008318183,0.0034593926,0.6859035,0.002336753,0.0021067061,0.25938532],"study_design_scores_gemma":[0.0005592628,0.010569598,0.06033729,0.00087044266,0.00042976093,0.00596141,0.000972588,0.08748815,0.77865356,0.0049745427,0.048825305,0.00035798555],"about_ca_topic_score_codex":0.0008749606,"about_ca_topic_score_gemma":0.0010526573,"teacher_disagreement_score":0.013582759,"about_ca_system_score_codex":0.00070852804,"about_ca_system_score_gemma":0.0024345915,"threshold_uncertainty_score":0.07183331},"labels":[],"label_agreement":null},{"id":"W2214181924","doi":"10.1128/jcm.03019-15","title":"Multilaboratory Evaluation of <i>In Vitro</i> Antifungal Susceptibility Testing of Dermatophytes for ME1111","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"Meiji Seika Pharma","keywords":"Antifungal; Microbiology; Dermatophyte; In vitro; Biology; Medicine; Genetics","score_opus":0.21913309475668039,"score_gpt":0.46521502645581136,"score_spread":0.24608193169913098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2214181924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8455318,0.003511942,0.13015074,0.0010031256,0.00063914194,0.005021898,0.003987455,0.0013126897,0.008841158],"genre_scores_gemma":[0.80981827,0.001415944,0.16780214,0.0012262455,0.00028988865,0.0031586827,0.012308296,0.00041209225,0.0035683059],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.94657826,0.020118693,0.0067307567,0.009089559,0.016370306,0.0011123896],"domain_scores_gemma":[0.9527631,0.010041512,0.009830398,0.008772451,0.01704447,0.0015481329],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.030458175,0.0018641603,0.0012962328,0.0012127876,0.0012638584,0.002431573,0.002311942,0.0022931185,0.0018014061],"category_scores_gemma":[0.03398605,0.0010642284,0.0015565109,0.0015150367,0.0019089353,0.0009271751,0.003388384,0.0015944001,0.0014814707],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021933655,0.0015760561,0.03602408,0.0007126281,0.00042548808,0.00018190229,0.0016884508,0.0013990782,0.9287154,0.00048407255,0.0014761223,0.025123307],"study_design_scores_gemma":[0.000252541,0.017277677,0.053368002,0.00021601305,0.00088755833,0.0015506006,0.0005218794,0.0035412053,0.908282,0.0002452831,0.013678687,0.00017869112],"about_ca_topic_score_codex":0.0024933289,"about_ca_topic_score_gemma":0.003305065,"teacher_disagreement_score":0.030458175,"about_ca_system_score_codex":0.001305205,"about_ca_system_score_gemma":0.002184544,"threshold_uncertainty_score":0.16108012},"labels":[],"label_agreement":null},{"id":"W2216089216","doi":"10.1128/jcm.02720-15","title":"Laboratory-Acquired Infection with Salmonella enterica Serovar Typhimurium Exposed by Whole-Genome Sequencing","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory; Public Health Agency of Canada; University of Regina","funders":"","keywords":"Salmonella enterica; Serotype; Biosafety; Salmonella; Biology; DNA sequencing; Whole genome sequencing; Genome; Identification (biology); Computational biology; Virology; Genetics; DNA; Gene; Biotechnology; Bacteria","score_opus":0.07925227573118118,"score_gpt":0.30494253678297234,"score_spread":0.22569026105179116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2216089216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9855928,0.0007753032,0.009780598,0.00018942362,0.000041538606,0.00007124146,0.0017306145,0.000106613,0.0017117349],"genre_scores_gemma":[0.9881854,0.00063859223,0.008780163,0.00023873855,0.000016191867,0.000018615516,0.0016523448,0.000020182973,0.00044979042],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99945337,0.0001612129,0.00004623203,0.00014426673,0.00012562975,0.00006939932],"domain_scores_gemma":[0.99949265,0.00015384526,0.00013020606,0.00006300462,0.00011084727,0.0000494197],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006332183,0.00036629732,0.0002214373,0.00052128686,0.00018838925,0.00046484117,0.00020841438,0.0004146982,0.0007496343],"category_scores_gemma":[0.0010004581,0.00016549315,0.00034295602,0.000356638,0.00022026419,0.00023925169,0.00045760855,0.0003520702,0.00016026759],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060816767,0.00016501978,0.37467462,0.0003935203,0.0002815108,0.00093656866,0.00052673375,0.0006040976,0.59157646,0.000343429,0.0006886348,0.02920121],"study_design_scores_gemma":[0.000018060107,0.000947123,0.89035654,0.00011351723,0.00028409273,0.004257244,0.0008266498,0.00438254,0.094009764,0.0006240243,0.004139813,0.000040652336],"about_ca_topic_score_codex":0.0020092719,"about_ca_topic_score_gemma":0.0032557764,"teacher_disagreement_score":0.0020092719,"about_ca_system_score_codex":0.00015161971,"about_ca_system_score_gemma":0.0002349935,"threshold_uncertainty_score":0.00399518},"labels":[],"label_agreement":null},{"id":"W2219221016","doi":"10.1128/jcm.02200-15","title":"Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Ministère de la Santé et des Services Sociaux (Québec); Université de Montréal; Santé Montérégie; McGill University; Public Health Agency of Canada; Institut National de Santé Publique du Québec","funders":"","keywords":"Subtyping; Pulsed-field gel electrophoresis; Outbreak; Salmonella enterica; Serotype; Biology; Genome; Phylogenetic tree; Pathogenicity island; Context (archaeology); Typing; Salmonella; Genetics; Molecular epidemiology; Virology; Genotype; Gene; Bacteria","score_opus":0.1754584784246452,"score_gpt":0.34018786606304013,"score_spread":0.16472938763839493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2219221016","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9743726,0.0006159051,0.013046263,0.0001228414,0.000015250893,0.00009606449,0.009365794,0.00035146807,0.0020138219],"genre_scores_gemma":[0.96489525,0.00029314012,0.023869157,0.00009407114,0.0000062531008,0.000028281313,0.010203724,0.00008437164,0.0005257982],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995183,0.000073803865,0.000033191285,0.00014730475,0.0001574553,0.00006996405],"domain_scores_gemma":[0.99868363,0.00028415842,0.00020847585,0.00010195478,0.0006088227,0.00011294452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009741831,0.00044819555,0.00037456717,0.0013877427,0.0006034778,0.001317099,0.0004118528,0.00030840718,0.0010004991],"category_scores_gemma":[0.002332558,0.00016488455,0.00037799415,0.0016073303,0.0002773056,0.00032084534,0.0004317385,0.0002492216,0.00035005543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009588249,0.00014628611,0.50631803,0.0005812315,0.00039560447,0.0008974952,0.0013162397,0.008590695,0.40480328,0.0004716527,0.0026082422,0.072912425],"study_design_scores_gemma":[0.000022496335,0.000180093,0.9253057,0.00010360381,0.00025746995,0.00056604587,0.0010609152,0.03332749,0.030789211,0.00022439993,0.008097886,0.00006463753],"about_ca_topic_score_codex":0.24287693,"about_ca_topic_score_gemma":0.41058666,"teacher_disagreement_score":0.24287693,"about_ca_system_score_codex":0.0012859569,"about_ca_system_score_gemma":0.0021013352,"threshold_uncertainty_score":0.4829265},"labels":[],"label_agreement":null},{"id":"W2234586290","doi":"10.1128/jcm.03050-15","title":"Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":255,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Children's & Women's Health Centre of British Columbia","funders":"","keywords":"DNA sequencing; Biology; Pathogen; Pathogenic organism; DNA; Microbiology; Human pathogen; Computational biology; Genetics; Virology; Bacteria","score_opus":0.18705530354083666,"score_gpt":0.4304876745728389,"score_spread":0.24343237103200221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2234586290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.59649456,0.005045297,0.3910063,0.00078825094,0.0002772772,0.0011398941,0.001457235,0.0014667313,0.0023244126],"genre_scores_gemma":[0.54334426,0.002538957,0.44720906,0.0008799209,0.000066729546,0.0008211915,0.002876284,0.00021380773,0.0020497872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979254,0.0007642005,0.00020793728,0.00039598855,0.0006137567,0.0000927719],"domain_scores_gemma":[0.99902546,0.0005092335,0.00012783869,0.00011503701,0.00018721509,0.00003527369],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014175011,0.00079876836,0.0005496913,0.00052987854,0.00023624077,0.00062325405,0.00052139716,0.0008235886,0.0010313444],"category_scores_gemma":[0.002916238,0.0004158159,0.0004193204,0.00035104834,0.00054646685,0.00032995324,0.0004402454,0.0006507846,0.0007749452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004009376,0.000022140126,0.0004265147,0.000077966695,0.000008335361,0.000021974702,0.000024649022,0.00008758419,0.99654776,0.000033616274,0.000033766486,0.0026757307],"study_design_scores_gemma":[0.0000069684625,0.00016737744,0.0020302334,0.00002522175,0.000019175879,0.00015777611,0.00003098384,0.0020968625,0.9935503,0.00007869761,0.0018273713,0.0000089137175],"about_ca_topic_score_codex":0.0003558891,"about_ca_topic_score_gemma":0.0009204811,"teacher_disagreement_score":0.0014175011,"about_ca_system_score_codex":0.00022817009,"about_ca_system_score_gemma":0.0005535437,"threshold_uncertainty_score":0.007496536},"labels":[],"label_agreement":null},{"id":"W2236349991","doi":"10.1128/jcm.02803-15","title":"Interferon Gamma Release Assays for Latent Tuberculosis: What Are the Sources of Variability?","year":2016,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Latent tuberculosis; Interferon gamma; Tuberculosis; Interferon gamma release assay; Mycobacterium tuberculosis; Virology; Biology; Microbiology; Immunology; Medicine; Cytokine; Pathology","score_opus":0.13389101614127194,"score_gpt":0.456680695332575,"score_spread":0.3227896791913031,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2236349991","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000479076,0.99913377,0.00011535325,0.00040719265,0.00011195347,0.0000030819358,0.00001245625,0.0000030738665,0.00016517336],"genre_scores_gemma":[0.0005484957,0.9985598,0.0002794364,0.00026519736,0.00019584362,0.0000067155456,0.000023549168,0.0000019803258,0.00011907143],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.9979857,0.0005656367,0.00039891715,0.00027390337,0.00069051515,0.00008536678],"domain_scores_gemma":[0.9924143,0.0053525395,0.00077016384,0.00014408604,0.0011966056,0.00012227129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004474009,0.001031342,0.0029091323,0.0041324,0.00028804346,0.0021150813,0.0018475596,0.0020375096,0.0022032452],"category_scores_gemma":[0.008651447,0.00054061256,0.0013526395,0.0032136969,0.0011112451,0.0030376662,0.0008801407,0.0022586929,0.001574739],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000073279494,0.000034631354,0.00083524396,0.031936392,0.00026203433,0.00022319515,0.00013936154,0.0002089078,0.00069438014,0.0020711313,0.015917592,0.94760394],"study_design_scores_gemma":[0.000034751545,0.00018730637,0.004117466,0.03632878,0.0008387911,0.0052310755,0.00036711458,0.00026864605,0.0014438807,0.0047412924,0.94634205,0.00009888187],"about_ca_topic_score_codex":0.0016737364,"about_ca_topic_score_gemma":0.0018570758,"teacher_disagreement_score":0.004474009,"about_ca_system_score_codex":0.0008308205,"about_ca_system_score_gemma":0.0019661253,"threshold_uncertainty_score":0.023661137},"labels":[],"label_agreement":null},{"id":"W2252830743","doi":"10.1128/jcm.02230-15","title":"Usefulness of Adjunctive Fecal Calprotectin and Serum Procalcitonin in Individuals Positive for Clostridium difficile Toxin Gene by PCR Assay","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; McGill University Health Centre","funders":"","keywords":"Calprotectin; Feces; Clostridium difficile; Diarrhea; Microbiology; Clostridiaceae; Clostridium difficile toxin A; Toxin; Biology; Medicine; Gastroenterology; Internal medicine; Antibiotics; Inflammatory bowel disease","score_opus":0.08160204768322188,"score_gpt":0.3784092741844427,"score_spread":0.2968072265012208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2252830743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973308,0.0013320391,0.00027978644,0.00014104322,0.00004191195,0.000022278977,0.000037990092,0.000028953864,0.0007851015],"genre_scores_gemma":[0.99898714,0.00022875328,0.0004927511,0.00006950283,0.000036592948,0.000010472583,0.000036213456,0.0000025243737,0.00013599094],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991266,0.00034953348,0.00007679029,0.00013285899,0.00018732762,0.00012683625],"domain_scores_gemma":[0.9982333,0.0008270369,0.00024319525,0.000076318815,0.00027035447,0.00034971256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010545905,0.0008650082,0.00082222413,0.001079934,0.00055583613,0.0005480162,0.000350094,0.00070356636,0.0007454299],"category_scores_gemma":[0.007045758,0.0003547619,0.0003256435,0.0004829335,0.00046217671,0.00047095254,0.00027258153,0.00084718986,0.00027422345],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024679361,0.0005087265,0.9561256,0.000084276595,0.00005237776,0.0016933123,0.00038526984,0.00019525504,0.010943278,0.000021831927,0.00027757345,0.027244702],"study_design_scores_gemma":[0.00023247956,0.0068785674,0.9740151,0.00011709925,0.00029060943,0.005497223,0.0008988814,0.0034943377,0.0075367247,0.000085730884,0.00091456395,0.00003859929],"about_ca_topic_score_codex":0.0020303135,"about_ca_topic_score_gemma":0.0028482,"teacher_disagreement_score":0.0020303135,"about_ca_system_score_codex":0.0002631653,"about_ca_system_score_gemma":0.00039231972,"threshold_uncertainty_score":0.005577266},"labels":[],"label_agreement":null},{"id":"W2254546860","doi":"10.1128/jcm.01607-15","title":"Reevaluation of an Acanthamoeba Molecular Diagnostic Algorithm following an Atypical Case of Amoebic Keratitis","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Ontario; Toronto General Hospital; Toronto Public Health","funders":"","keywords":"Acanthamoeba; Acanthamoeba keratitis; Gold standard (test); Biology; Microbiology; Predictive value; Keratitis; Medicine; Internal medicine; Dermatology","score_opus":0.06038414748602657,"score_gpt":0.4192882657166002,"score_spread":0.35890411823057367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2254546860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9122921,0.008676896,0.053541254,0.012039125,0.00046535744,0.00078903703,0.000140373,0.00074575184,0.011310154],"genre_scores_gemma":[0.94419086,0.002441796,0.050802313,0.0012628217,0.00036614368,0.00012511788,0.0002031704,0.00004470649,0.0005631644],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99572253,0.0013492816,0.00097102666,0.00039489873,0.0011582238,0.00040387065],"domain_scores_gemma":[0.99469686,0.0017741307,0.0004803225,0.00023113542,0.0024059177,0.00041151527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00655904,0.00093495764,0.0010164493,0.00637213,0.0010605373,0.00247996,0.0029442792,0.00167086,0.00047288774],"category_scores_gemma":[0.015227714,0.0005905967,0.00077844603,0.0013049354,0.0011341716,0.0020530887,0.0012476274,0.001945168,0.0005012787],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080362224,0.0005571356,0.7291733,0.0005190881,0.00013233876,0.049749177,0.0021583138,0.0061514606,0.021722684,0.0017532497,0.006374346,0.18090533],"study_design_scores_gemma":[0.00023714948,0.002047399,0.5247694,0.00188953,0.0006225526,0.2033898,0.008872106,0.19631194,0.027101306,0.007842348,0.026621956,0.0002945044],"about_ca_topic_score_codex":0.0029626414,"about_ca_topic_score_gemma":0.0041256784,"teacher_disagreement_score":0.00655904,"about_ca_system_score_codex":0.001240379,"about_ca_system_score_gemma":0.0013944542,"threshold_uncertainty_score":0.034687936},"labels":[],"label_agreement":null},{"id":"W2258118934","doi":"10.1128/jcm.02409-15","title":"Variable-Number Tandem-Repeat Analysis of Respiratory and Household Water Biofilm Isolates of “Mycobacterium avium subsp. hominissuis” with Establishment of a PCR Database","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"National Institute of General Medical Sciences; Amon G. Carter Foundation","keywords":"Biology; Variable number tandem repeat; Amplicon; Tandem repeat; Microbiology; Typing; Insertion sequence; Mycobacterium; Polymerase chain reaction; Subtyping; Population; Mycobacterium avium-intracellulare infection; Virology; Genetics; Genotype; Bacteria; Gene; Genome; Transposable element; Medicine","score_opus":0.04738510439306183,"score_gpt":0.33786686328752646,"score_spread":0.29048175889446465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2258118934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99925965,0.00006622324,0.0003042895,0.000011184373,0.0000029615267,0.000017610715,0.00020623334,0.0000025752356,0.00012928825],"genre_scores_gemma":[0.99739045,0.00008472567,0.0013788783,0.00002878462,0.0000072321504,0.00002324638,0.0008903082,0.00000228536,0.00019420218],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996364,0.000081898506,0.000047118032,0.00007555241,0.00010482733,0.000054146272],"domain_scores_gemma":[0.9996526,0.000074169504,0.00011856322,0.000025813184,0.00007539356,0.000053350548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030708336,0.00023017662,0.00016234275,0.0007546074,0.0001981211,0.00023542721,0.0001865951,0.00026474422,0.0006227805],"category_scores_gemma":[0.0009659832,0.0001244314,0.00019015622,0.0005476698,0.00012376695,0.00011652822,0.00022164155,0.00019128405,0.0001476235],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039096663,0.00018477875,0.79276615,0.0000946809,0.000053903583,0.0009625028,0.0008016876,0.00024885384,0.18098882,0.000096625234,0.0002741332,0.023136886],"study_design_scores_gemma":[0.000023747518,0.0007050408,0.9705419,0.000029188119,0.000041549418,0.0022479994,0.0006898257,0.0011129455,0.023292767,0.00005582187,0.0012520003,0.0000072643747],"about_ca_topic_score_codex":0.0029039017,"about_ca_topic_score_gemma":0.0029923038,"teacher_disagreement_score":0.0029039017,"about_ca_system_score_codex":0.00016829741,"about_ca_system_score_gemma":0.00015246113,"threshold_uncertainty_score":0.0057739615},"labels":[],"label_agreement":null},{"id":"W2260764139","doi":"10.1128/jcm.03202-15","title":"Comparative Detection and Quantification of Arcobacter butzleri in Stools from Diarrheic and Nondiarrheic People in Southwestern Alberta, Canada","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Chinook Regional Hospital; Agriculture and Agri-Food Canada; University of Lethbridge","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Government of Canada","keywords":"Arcobacter; Gram-negative bacterial infections; Feces; Microbiology; Medicine; Biology; Antibiotics; Bacteria; Campylobacter","score_opus":0.04395110831462496,"score_gpt":0.29551795544721415,"score_spread":0.2515668471325892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2260764139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963871,0.0010213779,0.00020073148,0.000080628255,0.000009405399,0.000032913365,0.0010601509,0.000012079766,0.0011956022],"genre_scores_gemma":[0.99602205,0.0009632609,0.00080716057,0.0000927131,0.000005681792,0.000014352832,0.0012212322,0.000004667866,0.00086892094],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99936587,0.000056886885,0.000042440446,0.00010348412,0.0002765238,0.00015488046],"domain_scores_gemma":[0.9989453,0.00006402101,0.00015307397,0.000022203893,0.0006322101,0.00018327858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039466703,0.00041614188,0.00038830756,0.002554421,0.0016211577,0.0009631165,0.00058272615,0.00029927632,0.000780527],"category_scores_gemma":[0.00091269717,0.00036218864,0.0002824358,0.0030947458,0.0006744254,0.00017761045,0.0004986171,0.00025167127,0.0001598194],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028046223,0.00004046897,0.9779741,0.00012412222,0.000045273675,0.00038543297,0.0021232292,0.00015080995,0.008384415,0.000048554153,0.0004925193,0.009950545],"study_design_scores_gemma":[0.000004618499,0.00002893116,0.99771357,0.000019429723,0.000013385385,0.00012489688,0.0012745459,0.00011933028,0.00033262506,0.000006967517,0.00035658464,0.0000051715315],"about_ca_topic_score_codex":0.96183264,"about_ca_topic_score_gemma":0.9789554,"teacher_disagreement_score":0.038167357,"about_ca_system_score_codex":0.008488802,"about_ca_system_score_gemma":0.006051341,"threshold_uncertainty_score":0.07678419},"labels":[],"label_agreement":null},{"id":"W2266236244","doi":"10.1128/jcm.01632-15","title":"Molecular Assay for Detection of Ciprofloxacin Resistance in Neisseria gonorrhoeae Isolates from Cultures and Clinical Nucleic Acid Amplification Test Specimens","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; University of Manitoba; Saskatchewan Disease Control Laboratory; Dr. Georges-L.-Dumont University Hospital Centre; Provincial Laboratory of Public Health; Public Health Agency of Canada; Toronto Public Health; Ste. Anne's Hospital; Public Health Ontario; BC Centre for Disease Control","funders":"","keywords":"Neisseria gonorrhoeae; Microbiology; Neisseriaceae; Biology; Ciprofloxacin; Nucleic acid; Nucleic Acid Amplification Tests; Virology; Genetics; Antibiotics; Chlamydia trachomatis","score_opus":0.0584918023946829,"score_gpt":0.3998218466230856,"score_spread":0.34133004422840274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2266236244","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.753183,0.004279436,0.23055446,0.0008250237,0.00028524591,0.0018806744,0.0023352108,0.0014016852,0.0052551664],"genre_scores_gemma":[0.62586457,0.0019876524,0.3636381,0.00060549745,0.00013296562,0.0021031427,0.002546257,0.000070958835,0.003050854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99631304,0.001116772,0.0003785176,0.0007440035,0.001230162,0.00021751638],"domain_scores_gemma":[0.9965821,0.0014316571,0.00078937865,0.0002578855,0.00075130415,0.00018774974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022090266,0.00087909476,0.0007477244,0.0022386762,0.00032532882,0.00077365065,0.00090728555,0.0010922436,0.0014519611],"category_scores_gemma":[0.0050429804,0.000667407,0.0005015341,0.0006921359,0.00061144575,0.00048988045,0.0004437023,0.0011759218,0.0009530853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029365107,0.00024468914,0.0226505,0.00026223116,0.00005221536,0.00022412327,0.00022099035,0.00034411697,0.9559084,0.00022633997,0.00024341025,0.019329293],"study_design_scores_gemma":[0.0001706652,0.0030874445,0.09312541,0.00029007465,0.00027347097,0.0054985033,0.0002951185,0.022787724,0.8650419,0.00044706627,0.008863405,0.00011929483],"about_ca_topic_score_codex":0.0006229084,"about_ca_topic_score_gemma":0.0012031359,"teacher_disagreement_score":0.0022386762,"about_ca_system_score_codex":0.00041075613,"about_ca_system_score_gemma":0.00055257685,"threshold_uncertainty_score":0.01168257},"labels":[],"label_agreement":null},{"id":"W2284974270","doi":"10.1128/jcm.02778-15","title":"Automated Scoring of Chromogenic Media for Detection of Methicillin-Resistant Staphylococcus aureus by Use of WASPLab Image Analysis Software","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton General Hospital; Université Laval","funders":"","keywords":"Chromogenic; Staphylococcus aureus; Agar; Microbiology; Methicillin-resistant Staphylococcus aureus; Hue; Biology; Digital image; Medicine; Bacteria; Artificial intelligence; Image processing; Chromatography; Chemistry; Computer science","score_opus":0.07618158355577812,"score_gpt":0.3624883808681054,"score_spread":0.28630679731232733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2284974270","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25715655,0.0020331144,0.71185476,0.000300379,0.00058239314,0.003486743,0.0019435104,0.010866621,0.01177589],"genre_scores_gemma":[0.19814256,0.001324714,0.78553337,0.000226714,0.000083185456,0.004336302,0.002904513,0.00073995744,0.0067086844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9929219,0.0018724527,0.0007361512,0.0008254522,0.0033528262,0.00029133316],"domain_scores_gemma":[0.99356383,0.0017947988,0.0007025893,0.0007264032,0.0029693225,0.00024296886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005752848,0.0017177623,0.0010226922,0.0094062295,0.00069696654,0.0016623053,0.00170623,0.0007037739,0.0050342404],"category_scores_gemma":[0.00835267,0.00093540945,0.001045844,0.002349158,0.0007182299,0.0010796336,0.001452046,0.0011842325,0.0023082956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015075114,0.0005492959,0.022503836,0.0009715513,0.000245928,0.0004926924,0.0004767889,0.00219664,0.8112415,0.0022431533,0.005835261,0.15173593],"study_design_scores_gemma":[0.00019058633,0.0016474386,0.069361046,0.00028499274,0.00024065915,0.0022216649,0.0003259831,0.10680907,0.7923907,0.0014220688,0.024792962,0.00031269973],"about_ca_topic_score_codex":0.0013795912,"about_ca_topic_score_gemma":0.0019301322,"teacher_disagreement_score":0.0094062295,"about_ca_system_score_codex":0.0006669511,"about_ca_system_score_gemma":0.0011478383,"threshold_uncertainty_score":0.030424297},"labels":[],"label_agreement":null},{"id":"W2285197800","doi":"10.1128/jcm.02954-15","title":"PCR-Based Rapid Identification System Using Bridged Nucleic Acids for Detection of Clarithromycin-Resistant Mycobacterium avium-M. intracellulare Complex Isolates","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Japan Society for the Promotion of Science","keywords":"Clarithromycin; Microbiology; Mycobacterium; Nucleic acid; Mycobacterium avium complex; Biology; Identification (biology); Virology; Mycobacterium avium-intracellulare infection; Polymerase chain reaction; Bacteria; Antibiotics; Genetics; Gene","score_opus":0.08693577425148913,"score_gpt":0.36918827099919055,"score_spread":0.2822524967477014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2285197800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7634268,0.0024006837,0.22775464,0.00026638366,0.00025647334,0.00080202485,0.0009886317,0.0013645362,0.0027398388],"genre_scores_gemma":[0.6927909,0.0011705203,0.2991705,0.00035208696,0.00004939508,0.0010124214,0.0025045904,0.000067538385,0.0028820345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985576,0.0003604496,0.000117692034,0.00046234383,0.00037725831,0.00012457863],"domain_scores_gemma":[0.9992242,0.00031884148,0.00016529295,0.00007125539,0.00015643727,0.00006403003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007472823,0.00069042534,0.0005184193,0.0009871037,0.00018832568,0.00040459292,0.0005879707,0.0007849535,0.00067746406],"category_scores_gemma":[0.0013313213,0.000386741,0.00031122734,0.00026821703,0.00041263032,0.00031377736,0.00040368584,0.00065674796,0.00086224824],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000080347025,0.000052752093,0.0010269453,0.00005883552,0.000007598435,0.000054841574,0.00006700184,0.000068133464,0.99314183,0.00008533156,0.000040223942,0.0053161224],"study_design_scores_gemma":[0.00004185825,0.0010346594,0.009012029,0.000041228446,0.000063799314,0.0012207242,0.00010608156,0.006911152,0.9783212,0.0001014462,0.003113391,0.00003247317],"about_ca_topic_score_codex":0.0002576625,"about_ca_topic_score_gemma":0.0004416308,"teacher_disagreement_score":0.0009871037,"about_ca_system_score_codex":0.00021891313,"about_ca_system_score_gemma":0.00034759822,"threshold_uncertainty_score":0.0039520264},"labels":[],"label_agreement":null},{"id":"W2285368925","doi":"10.1128/jcm.02872-15","title":"Species-Level Identification of Actinomyces Isolates Causing Invasive Infections: Multiyear Comparison of Vitek MS (Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry) to Partial Sequencing of the 16S rRNA Gene","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Actinomyces; Biology; Microbiology; 16S ribosomal RNA; Ribosomal RNA; Bacteria; Gene; Genetics","score_opus":0.07602494890641234,"score_gpt":0.3705102482057294,"score_spread":0.2944852992993171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2285368925","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879104,0.00027137678,0.00051432103,0.000007571169,0.000006908436,0.000013645467,0.00016921702,0.0000076421875,0.00021827334],"genre_scores_gemma":[0.9983481,0.00012076381,0.0008584509,0.000014325837,0.000003982818,0.000009404239,0.0005498035,0.0000038397257,0.0000914137],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99820876,0.0004135211,0.0003184801,0.00047553293,0.00038723063,0.00019650205],"domain_scores_gemma":[0.99717003,0.0006170415,0.00084588,0.00016541961,0.0009841038,0.00021745448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028282055,0.00025415566,0.00043383677,0.0022169645,0.00033562456,0.00072434585,0.000400068,0.00040733715,0.00041296755],"category_scores_gemma":[0.004756225,0.00022196957,0.00039705142,0.00091301685,0.0002923512,0.000820602,0.0009368227,0.0003029607,0.00013053023],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012132106,0.00027909392,0.8844767,0.00017921542,0.00030155297,0.00032904986,0.0010321878,0.0008873004,0.08097229,0.000084911604,0.00018216808,0.030062217],"study_design_scores_gemma":[0.00000661993,0.0005758515,0.9870788,0.000019200796,0.000079625934,0.00082240824,0.00043619078,0.0013043712,0.009197365,0.000036261994,0.00042641858,0.00001690905],"about_ca_topic_score_codex":0.0021379385,"about_ca_topic_score_gemma":0.0024593545,"teacher_disagreement_score":0.0028282055,"about_ca_system_score_codex":0.0004288839,"about_ca_system_score_gemma":0.00022796089,"threshold_uncertainty_score":0.01495719},"labels":[],"label_agreement":null},{"id":"W2287706102","doi":"10.1128/jcm.02709-15","title":"Verification of a Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Method for Diagnostic Identification of High-Consequence Bacterial Pathogens","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Mass spectrometry; Identification (biology); Matrix-assisted laser desorption/ionization; Chromatography; Time-of-flight mass spectrometry; Ionization; Microbiology; Chemistry; Desorption; Biology","score_opus":0.039381746910766575,"score_gpt":0.3570639856454459,"score_spread":0.3176822387346793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2287706102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8021358,0.0008970442,0.19101137,0.0012306019,0.0002906954,0.0012086347,0.0010840151,0.0009832927,0.0011585234],"genre_scores_gemma":[0.7967977,0.00050531386,0.19926524,0.00047128843,0.000056080316,0.00051883276,0.0009588641,0.00016076668,0.0012659414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9760878,0.0053125885,0.0022984343,0.0035986865,0.0119693335,0.00073311717],"domain_scores_gemma":[0.98052084,0.007389136,0.0022370724,0.0025025855,0.0067876466,0.000562696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.017213004,0.0010996708,0.00073896773,0.0014899096,0.00096280215,0.0015183135,0.0020622478,0.0024124552,0.00093923573],"category_scores_gemma":[0.022036487,0.00066626753,0.0008905631,0.000655931,0.0013262857,0.0010939279,0.0011446538,0.0007412706,0.0012689463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029363827,0.0002698897,0.008726265,0.00017140449,0.00004571551,0.00021311644,0.00028467592,0.00042820728,0.98314697,0.00019121899,0.00011970276,0.0061093373],"study_design_scores_gemma":[0.000032005646,0.0009056137,0.0066311294,0.00003728232,0.00006826439,0.0010319309,0.00013119222,0.0045263157,0.98538107,0.00011917891,0.0011089616,0.000027126882],"about_ca_topic_score_codex":0.0015725753,"about_ca_topic_score_gemma":0.002128111,"teacher_disagreement_score":0.017213004,"about_ca_system_score_codex":0.00065740483,"about_ca_system_score_gemma":0.0021554201,"threshold_uncertainty_score":0.09103215},"labels":[],"label_agreement":null},{"id":"W2289773312","doi":"10.1128/jcm.02046-15","title":"Vancomycin-Variable Enterococcal Bacteremia","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; St Joseph's Health Centre; Public Health Ontario; University of Toronto","funders":"","keywords":"Bacteremia; Vancomycin; Enterococcus; Biology; Microbiology; Antibiotics; Bacteria; Staphylococcus aureus; Genetics","score_opus":0.08218360955024454,"score_gpt":0.3984038560487266,"score_spread":0.316220246498482,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2289773312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9679147,0.0045508477,0.006241095,0.0026988825,0.00023155267,0.00011914411,0.00011075035,0.0001642786,0.017968846],"genre_scores_gemma":[0.99758077,0.0005844048,0.00068731385,0.0004236785,0.00011196894,0.0000070538536,0.000026489579,0.00000890613,0.0005693805],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9995807,0.000078674355,0.000047814938,0.00007750332,0.000077579556,0.00013782678],"domain_scores_gemma":[0.9992901,0.00020137239,0.00017702527,0.000035946145,0.000053487725,0.00024209089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030313144,0.0011243187,0.00043940666,0.0010402898,0.001129096,0.0007478487,0.0004029601,0.0015917275,0.00095699436],"category_scores_gemma":[0.0024935044,0.0004065388,0.00040882747,0.0006637729,0.0009605021,0.00080025673,0.0010156884,0.0013733376,0.00044483723],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055805067,0.00004114227,0.01658538,0.00004679,0.000008384571,0.9730899,0.00024158687,0.00019526984,0.004431212,0.0005553293,0.00041612933,0.0043330584],"study_design_scores_gemma":[0.000006996222,0.00007610477,0.008374551,0.000036712685,0.0000079984675,0.988605,0.0001775158,0.00040356102,0.0012126209,0.00038670836,0.000700822,0.000011437036],"about_ca_topic_score_codex":0.00094082195,"about_ca_topic_score_gemma":0.0010613054,"teacher_disagreement_score":0.0015917275,"about_ca_system_score_codex":0.0006740617,"about_ca_system_score_gemma":0.00048573306,"threshold_uncertainty_score":0.00489074},"labels":[],"label_agreement":null},{"id":"W2294646823","doi":"10.1128/jcm.00198-16","title":"Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, “Mycobacterium virginiense” sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"Amon G. Carter Foundation","keywords":"Microbiology; Tenosynovitis; Mycobacterium; Biology; Nontuberculous mycobacteria; Mycobacterium marinum; Clarithromycin; Mycobacterium abscessus; rpoB; Antibiotics; 16S ribosomal RNA; Bacteria; Medicine; Genetics","score_opus":0.048316802594701405,"score_gpt":0.3174407260892437,"score_spread":0.2691239234945423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2294646823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99369276,0.0021776548,0.0004355513,0.00010231055,0.000038167163,0.00003926734,0.000119411976,0.000010789038,0.0033841399],"genre_scores_gemma":[0.99702007,0.00054220605,0.0010756125,0.00006230182,0.000021543876,0.000011715045,0.0004298945,0.000001837925,0.0008348852],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995436,0.000059543443,0.00006339805,0.0001363803,0.00010842804,0.00008865215],"domain_scores_gemma":[0.999493,0.00008788737,0.00017758613,0.000074572825,0.00010534863,0.000061609564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044931116,0.0004192061,0.00021335146,0.00071433734,0.00060959015,0.00071943697,0.00057756604,0.0005588564,0.0010966961],"category_scores_gemma":[0.0008744673,0.00021358555,0.00026192196,0.0003916365,0.00037872564,0.00056225987,0.0005454807,0.00043537442,0.00017698326],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006624536,0.00035612087,0.6555288,0.0006277059,0.00016831829,0.0098849675,0.0016775532,0.0004596143,0.24043459,0.0010270488,0.0005484185,0.08862439],"study_design_scores_gemma":[0.00004184125,0.00070789625,0.9210719,0.00022255536,0.00018139304,0.02501268,0.0025604072,0.0011794914,0.03720476,0.00042169154,0.011357199,0.000038152157],"about_ca_topic_score_codex":0.008653451,"about_ca_topic_score_gemma":0.016768854,"teacher_disagreement_score":0.008653451,"about_ca_system_score_codex":0.0004243768,"about_ca_system_score_gemma":0.0005117116,"threshold_uncertainty_score":0.017206192},"labels":[],"label_agreement":null},{"id":"W2295312316","doi":"10.1128/jcm.02699-15","title":"Antemortem Detection of Chronic Wasting Disease Prions in Nasal Brush Collections and Rectal Biopsy Specimens from White-Tailed Deer by Real-Time Quaking-Induced Conversion","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institutes of Health; National Center for Research Resources; Merial","keywords":"Chronic wasting disease; Medicine; Pathology; Biopsy; Disease; Scrapie","score_opus":0.014005245124779474,"score_gpt":0.29124392749485517,"score_spread":0.2772386823700757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2295312316","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860233,0.00021379141,0.0008139133,0.000005275285,0.000003760058,0.000028839608,0.000067479676,0.0000071663994,0.0002574217],"genre_scores_gemma":[0.99524313,0.00031834442,0.0038351046,0.000035136694,0.0000057450056,0.00003064802,0.0003107423,0.0000030352833,0.00021812489],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932945,0.0001561154,0.000094674884,0.00019204979,0.00015992508,0.00006780047],"domain_scores_gemma":[0.9993887,0.00018621919,0.00017143639,0.00006152311,0.00014515813,0.000046969224],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092588627,0.00036104856,0.00022614462,0.00055968825,0.00024901473,0.0004796949,0.00018018017,0.00033235166,0.0003016795],"category_scores_gemma":[0.0011506595,0.00019933684,0.00015083699,0.0002691125,0.00052073936,0.00024538586,0.00021321054,0.00020551734,0.00014697628],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004463654,0.00009514714,0.3314975,0.00012829677,0.0000335796,0.0008861308,0.00080462365,0.00008321,0.6596914,0.000034357563,0.000033988323,0.006265492],"study_design_scores_gemma":[0.000018943918,0.001436956,0.8650836,0.00004343918,0.0001039605,0.0069442894,0.0011294205,0.0011470612,0.12303125,0.000046582376,0.0009967225,0.000017814997],"about_ca_topic_score_codex":0.0013820864,"about_ca_topic_score_gemma":0.0035344167,"teacher_disagreement_score":0.0013820864,"about_ca_system_score_codex":0.00014563951,"about_ca_system_score_gemma":0.0001252534,"threshold_uncertainty_score":0.004896581},"labels":[],"label_agreement":null},{"id":"W2304342781","doi":"10.1128/jcm.02960-15","title":"Inactivating Zaire Ebolavirus in Whole-Blood Thin Smears Used for Malaria Diagnosis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Ebolavirus; Malaria; Coinfection; Virology; Biology; Human immunodeficiency virus (HIV); Virus; Ebola virus; Immunology","score_opus":0.09458294750464104,"score_gpt":0.44412556201731496,"score_spread":0.34954261451267393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2304342781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988992,0.0034216738,0.0059438823,0.00008973043,0.000045138873,0.0001681092,0.00019509639,0.00005079487,0.001093571],"genre_scores_gemma":[0.97853994,0.001993666,0.017146382,0.00008195717,0.000014902568,0.000080187536,0.00059349317,0.00002147575,0.0015280509],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996766,0.00009022147,0.00004273832,0.000055493263,0.00008658643,0.000048289265],"domain_scores_gemma":[0.9998016,0.00006411543,0.000040318802,0.000034466775,0.000048661135,0.000010959823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005305262,0.0004477147,0.00029922725,0.00022918527,0.00022984635,0.0003089207,0.00031383988,0.00029753748,0.0010182841],"category_scores_gemma":[0.000514129,0.00020609189,0.00021154522,0.000140898,0.00024822183,0.00022199348,0.00018383382,0.00044584248,0.00027660874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013604108,0.00004112544,0.001325163,0.00009551661,0.000018260618,0.00003087529,0.00004603705,0.000077231336,0.99401844,0.00002913731,0.000029314884,0.0041528805],"study_design_scores_gemma":[0.00001077861,0.00050972437,0.0080857705,0.000021962565,0.000044201908,0.00020779554,0.000053538657,0.0006102386,0.98917985,0.000016744545,0.0012550931,0.000004374979],"about_ca_topic_score_codex":0.0018312251,"about_ca_topic_score_gemma":0.0046968493,"teacher_disagreement_score":0.0018312251,"about_ca_system_score_codex":0.00015969631,"about_ca_system_score_gemma":0.00017927018,"threshold_uncertainty_score":0.0036411285},"labels":[],"label_agreement":null},{"id":"W2304883727","doi":"10.1128/jcm.03195-15","title":"Genomic Epidemiology and Molecular Resistance Mechanisms of Azithromycin-Resistant Neisseria gonorrhoeae in Canada from 1997 to 2014","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":138,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Provincial Laboratory of Public Health; Public Health Agency of Canada; Toronto Public Health; BC Centre for Disease Control; Public Health Ontario; Ste. Anne's Hospital; Health Canada; Saskatchewan Disease Control Laboratory; University of Manitoba","funders":"","keywords":"Neisseria gonorrhoeae; Biology; MTRR; 23S ribosomal RNA; Azithromycin; Genetics; Microbiology; Molecular epidemiology; Neisseria meningitidis; Phylogenetic tree; Genotype; Gene; Bacteria; Antibiotics","score_opus":0.03397772171844732,"score_gpt":0.34479317984525093,"score_spread":0.3108154581268036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2304883727","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98646206,0.0027318783,0.00031652875,0.00044119786,0.000013543357,0.0000649545,0.0077877757,0.000023249604,0.0021588267],"genre_scores_gemma":[0.9907487,0.0025518131,0.00072031416,0.0002057304,0.000009885084,0.000019200823,0.0044950284,0.000007873361,0.0012414232],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99933136,0.000022388953,0.000033745204,0.00013079608,0.0002790412,0.00020276106],"domain_scores_gemma":[0.99820495,0.000051700365,0.00024074876,0.0000300436,0.0012076189,0.00026506622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038253033,0.00033304913,0.00030634995,0.0029552379,0.0014637518,0.0011114818,0.00075003447,0.00032712054,0.0008706545],"category_scores_gemma":[0.0015739287,0.00029264958,0.00036994106,0.005355635,0.000641113,0.00022900396,0.00056207547,0.0004997515,0.00009297927],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016820255,0.000027484222,0.9735729,0.000105550185,0.00008185351,0.00027735246,0.0012889967,0.00044103802,0.0025815063,0.00028747445,0.001295986,0.019871593],"study_design_scores_gemma":[0.00000422018,0.000021225671,0.9964288,0.00004202655,0.000023480878,0.00011288883,0.000738839,0.00027051018,0.00028341112,0.000016266156,0.0020499243,0.000008465079],"about_ca_topic_score_codex":0.99446857,"about_ca_topic_score_gemma":0.99510777,"teacher_disagreement_score":0.027607623,"about_ca_system_score_codex":0.027607623,"about_ca_system_score_gemma":0.032296594,"threshold_uncertainty_score":0.20030826},"labels":[],"label_agreement":null},{"id":"W2306667279","doi":"10.1128/jcm.02700-15","title":"Seeded Amplification of Chronic Wasting Disease Prions in Nasal Brushings and Recto-anal Mucosa-Associated Lymphoid Tissues from Elk by Real-Time Quaking-Induced Conversion","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"National Institute of Allergy and Infectious Diseases; National Park Service; National Institutes of Health; National Center for Research Resources; National Institute of Neurological Disorders and Stroke; Merial; Canadian Food Inspection Agency; Colorado State University","keywords":"Chronic wasting disease; Pathology; Immunohistochemistry; Mucous membrane of nose; Medicine; Biopsy; Biology; Disease; Scrapie","score_opus":0.020283466766729357,"score_gpt":0.3188197500898702,"score_spread":0.2985362833231408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2306667279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955205,0.00025316354,0.0035868874,0.000010523582,0.0000073583615,0.000046587287,0.00011704595,0.000026533626,0.0004313642],"genre_scores_gemma":[0.9896923,0.00026588305,0.0087335855,0.00004775293,0.0000058301052,0.000071790375,0.0005551452,0.000011222955,0.0006165919],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994425,0.0000918635,0.00006115158,0.00018443489,0.00015287682,0.00006723044],"domain_scores_gemma":[0.99935454,0.00024779636,0.00015476783,0.00008502644,0.0001287785,0.000029144452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068321876,0.00023609596,0.00017204319,0.00030347236,0.00014084562,0.00042050384,0.00018303783,0.00028682812,0.00036258315],"category_scores_gemma":[0.00096467807,0.0001711433,0.00015901528,0.00013339508,0.0003203902,0.00016946036,0.00019248978,0.00024710066,0.0001727184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000101786376,0.000022350398,0.012533415,0.000032647724,0.000008733656,0.000058574602,0.000101223755,0.00006555248,0.9853065,0.000015091727,0.000009502062,0.0017446668],"study_design_scores_gemma":[0.000018213064,0.0009492274,0.25516433,0.000026977068,0.00008187672,0.0010500324,0.0004117527,0.005176064,0.73571765,0.000062343075,0.0013233806,0.000018042278],"about_ca_topic_score_codex":0.0011989914,"about_ca_topic_score_gemma":0.0027162859,"teacher_disagreement_score":0.0011989914,"about_ca_system_score_codex":0.00020462334,"about_ca_system_score_gemma":0.00011500617,"threshold_uncertainty_score":0.0036132336},"labels":[],"label_agreement":null},{"id":"W2314281521","doi":"10.1128/jcm.02992-15","title":"Cumulative Antimicrobial Susceptibility Data from Intensive Care Units at One Institution: Should Data Be Combined?","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; University of Toronto","funders":"","keywords":"Piperacillin; Intensive care; Medicine; Tazobactam; Intensive care unit; Antibiotics; Antibiotic resistance; Intensive care medicine; Antimicrobial; Emergency medicine; Pseudomonas aeruginosa; Biology; Microbiology; Imipenem","score_opus":0.32619118674165437,"score_gpt":0.4234631507700159,"score_spread":0.09727196402836152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314281521","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4822186,0.09242835,0.20646764,0.1333218,0.016472068,0.003293424,0.0375354,0.0027734188,0.02548927],"genre_scores_gemma":[0.69608134,0.021416549,0.23200306,0.01836252,0.0065229083,0.001999629,0.02134992,0.0008666701,0.001397382],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.8193319,0.09171221,0.042130582,0.010543529,0.034067616,0.0022142432],"domain_scores_gemma":[0.5459968,0.17978649,0.07250454,0.09384608,0.102513924,0.0053521893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.1499233,0.0018883599,0.0047163027,0.01698859,0.0015798212,0.009491606,0.0047655334,0.0030119352,0.0017144384],"category_scores_gemma":[0.38996783,0.0018443703,0.0033010272,0.03132799,0.0024859512,0.011226089,0.004872698,0.0049724407,0.0008581186],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011018377,0.00029906273,0.55896103,0.0036191768,0.006674449,0.0008000353,0.0033748467,0.0013791398,0.001354011,0.0036560372,0.044119127,0.37466124],"study_design_scores_gemma":[0.00040505253,0.0023595723,0.7991956,0.008781389,0.0065685124,0.0034766223,0.0101075135,0.008186224,0.004521761,0.020351196,0.13510811,0.0009384087],"about_ca_topic_score_codex":0.011516387,"about_ca_topic_score_gemma":0.02138705,"teacher_disagreement_score":0.1499233,"about_ca_system_score_codex":0.0023828107,"about_ca_system_score_gemma":0.0052451547,"threshold_uncertainty_score":0.79287964},"labels":[],"label_agreement":null},{"id":"W2318963346","doi":"10.1128/jcm.00189-16","title":"Diagnosis of Urinary Tract Infections in Children","year":2016,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Pediatric Urology and Nephrology Studies","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Urinalysis; Urinary system; Antimicrobial; Medicine; Intensive care medicine; Pediatrics; Biology; Internal medicine; Microbiology","score_opus":0.0725209343393486,"score_gpt":0.43876997422610425,"score_spread":0.36624903988675567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2318963346","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003833425,0.99701214,0.00020092673,0.00052258006,0.00026218034,0.000008721777,0.000045553337,0.000010978322,0.0015536947],"genre_scores_gemma":[0.0029364186,0.9958079,0.00039818443,0.00028710143,0.00028315594,0.000006327509,0.000063108004,0.0000019503902,0.00021591717],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.99937785,0.00012390278,0.00013068221,0.00008091316,0.00023954763,0.00004701398],"domain_scores_gemma":[0.9990827,0.0004596726,0.00018712727,0.000021333615,0.0002041768,0.00004501964],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006357015,0.0007670193,0.0012368119,0.0026785056,0.0003378876,0.0010181541,0.00097507535,0.00087446644,0.0023879306],"category_scores_gemma":[0.0025648093,0.00022934134,0.00062975916,0.0018790398,0.00063518883,0.0011504551,0.00064602226,0.0013441951,0.000984405],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046038804,0.000047830476,0.0057271584,0.028184772,0.00015929328,0.0023980318,0.00026668617,0.00022716356,0.0009102409,0.0017883157,0.04181548,0.91842896],"study_design_scores_gemma":[0.00002395066,0.000092914015,0.01573772,0.04475446,0.000363676,0.05539816,0.00069404504,0.00014223024,0.0007011469,0.002704731,0.8793351,0.0000518192],"about_ca_topic_score_codex":0.0024326409,"about_ca_topic_score_gemma":0.0031368898,"teacher_disagreement_score":0.0026785056,"about_ca_system_score_codex":0.0004944635,"about_ca_system_score_gemma":0.0015097326,"threshold_uncertainty_score":0.007988453},"labels":[],"label_agreement":null},{"id":"W2336870970","doi":"10.1128/jcm.00355-16","title":"Epidemiology of Invasive Group B Streptococcal Disease in Alberta, Canada, from 2003 to 2013","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Epidemiology; Medicine; STREPTOCOCCAL INFECTIONS; Microbiology; Biology; Immunology; Internal medicine","score_opus":0.04100855462812135,"score_gpt":0.3549124141859566,"score_spread":0.31390385955783523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2336870970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9138841,0.024455499,0.0012334539,0.0040090946,0.00030277026,0.00041409652,0.031245114,0.00026083481,0.024194999],"genre_scores_gemma":[0.9681617,0.012848026,0.0019428286,0.0013130787,0.00007382403,0.00007296374,0.009489894,0.000032268064,0.006065474],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986099,0.000058230056,0.0000730434,0.00013272977,0.0007933794,0.00033253897],"domain_scores_gemma":[0.99758875,0.000055536504,0.0003441203,0.000029789095,0.0013806514,0.0006010649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007104517,0.00073630083,0.00036511943,0.0041572643,0.0023294818,0.0016711957,0.0014980001,0.00046126652,0.0013311754],"category_scores_gemma":[0.0017243564,0.0004183055,0.000587832,0.006427091,0.00081424485,0.00034254254,0.0008535075,0.00070253055,0.0001964653],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016452193,0.000063317886,0.9581465,0.0002261428,0.00009285078,0.00066243275,0.0008296048,0.000699839,0.0008292275,0.00030909939,0.009303134,0.028673384],"study_design_scores_gemma":[0.000011723796,0.000036382295,0.9920889,0.0001858652,0.000045934805,0.00045078815,0.0010967846,0.00045448626,0.00013426277,0.00004725186,0.005425182,0.000022260248],"about_ca_topic_score_codex":0.9981382,"about_ca_topic_score_gemma":0.99834454,"teacher_disagreement_score":0.061511878,"about_ca_system_score_codex":0.061511878,"about_ca_system_score_gemma":0.07013101,"threshold_uncertainty_score":0.446302},"labels":[],"label_agreement":null},{"id":"W2337744062","doi":"10.1128/jcm.00542-16","title":"Endpoint Quaking-Induced Conversion: a Sensitive, Specific, and High-Throughput Method for Antemortem Diagnosis of Creutzfeldt-Jacob Disease","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Recombinant DNA; Cerebrospinal fluid; Fluorescence; Virology; Prion protein; Medicine; Pathology; Biology; Disease; Biochemistry; Physics; Gene","score_opus":0.044576882202706655,"score_gpt":0.36979893190433877,"score_spread":0.3252220497016321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2337744062","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5643078,0.009977603,0.40730047,0.00031554096,0.00019344504,0.0036369509,0.0037734222,0.0017026907,0.008792026],"genre_scores_gemma":[0.6930699,0.0041469675,0.29006648,0.00024227507,0.000077968376,0.0011180353,0.0044271536,0.00014589781,0.0067052823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99442685,0.0013048308,0.00042247315,0.0007560035,0.0028237088,0.00026604725],"domain_scores_gemma":[0.9976794,0.0007561175,0.00034440946,0.00027455325,0.0008268548,0.000118682474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036548646,0.0010031726,0.0010386449,0.0031144812,0.00075149577,0.0010898291,0.0010877697,0.00086125144,0.0009199042],"category_scores_gemma":[0.0031929368,0.00054106885,0.00041583533,0.001689401,0.0009008582,0.00046154094,0.0007577629,0.0009186293,0.0008748874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030992425,0.00026096948,0.015108567,0.00024499986,0.00002844178,0.0003002577,0.00023497456,0.00030456026,0.9478661,0.000214409,0.00041896393,0.03470783],"study_design_scores_gemma":[0.000033425196,0.0017554319,0.11697502,0.00008808483,0.00015614681,0.003979242,0.00018493552,0.006461936,0.8618036,0.0003027128,0.008102974,0.00015655105],"about_ca_topic_score_codex":0.004175212,"about_ca_topic_score_gemma":0.00931435,"teacher_disagreement_score":0.004175212,"about_ca_system_score_codex":0.0006961195,"about_ca_system_score_gemma":0.0008234151,"threshold_uncertainty_score":0.019329011},"labels":[],"label_agreement":null},{"id":"W2339182278","doi":"10.1128/jcm.01495-15","title":"Commutability of the First World Health Organization International Standard for Human Cytomegalovirus","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; Emory University","keywords":"Human cytomegalovirus; Virology; Cytomegalovirus; Biology; Viral disease; Herpesviridae; Virus","score_opus":0.12220934085269418,"score_gpt":0.4547595787036469,"score_spread":0.3325502378509527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339182278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5171638,0.0061591556,0.4406986,0.0012702513,0.0018934787,0.0024918674,0.0022207454,0.0015164183,0.026585663],"genre_scores_gemma":[0.62802935,0.0012026022,0.35895482,0.00043379894,0.00019033693,0.0015945213,0.0033208886,0.0005691707,0.005704583],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.93191224,0.03184666,0.0059956885,0.0069303974,0.02187906,0.0014360124],"domain_scores_gemma":[0.91766584,0.034739833,0.007118049,0.01816428,0.021448769,0.0008632806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.04748051,0.0009678602,0.0012113554,0.0030945146,0.0016224934,0.0028651375,0.0023305812,0.001255207,0.0025597834],"category_scores_gemma":[0.06805403,0.0007536221,0.0012743936,0.0024312078,0.002319954,0.001427731,0.002006011,0.001807351,0.0016483975],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004092548,0.00088552723,0.3455236,0.0021678854,0.00069304026,0.00044444806,0.008420829,0.0058183977,0.27337557,0.01366465,0.008301534,0.33661193],"study_design_scores_gemma":[0.00016317649,0.0069500664,0.43102694,0.00073327776,0.0005676873,0.0020347065,0.003968666,0.017294673,0.4396941,0.008326264,0.08882099,0.00041950436],"about_ca_topic_score_codex":0.0029189803,"about_ca_topic_score_gemma":0.004425404,"teacher_disagreement_score":0.04748051,"about_ca_system_score_codex":0.0016587211,"about_ca_system_score_gemma":0.002504353,"threshold_uncertainty_score":0.25110394},"labels":[],"label_agreement":null},{"id":"W2341468196","doi":"10.1128/jcm.00364-16","title":"Does Choice Matter? Reference-Based Alignment for Molecular Epidemiology of Tuberculosis","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Tuberculosis; Epidemiology; Molecular epidemiology; Medicine; Computational biology; Biology; Pathology; Genetics; Genotype","score_opus":0.1046024721134934,"score_gpt":0.4457550694883836,"score_spread":0.34115259737489023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2341468196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6992883,0.04178143,0.18899293,0.050166484,0.0027882662,0.0001848225,0.0023672276,0.00084421155,0.013586244],"genre_scores_gemma":[0.93796456,0.0049367305,0.048529092,0.0049780225,0.0006634379,0.00010643378,0.0011449178,0.0007033317,0.0009736108],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9361763,0.049915187,0.0033318403,0.005262306,0.0042851255,0.0010291899],"domain_scores_gemma":[0.88960075,0.088189,0.007022839,0.008838872,0.004957336,0.0013911262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06297506,0.00042743256,0.0012977398,0.0012094802,0.0008250204,0.0032672535,0.0016187369,0.001708043,0.003554302],"category_scores_gemma":[0.18228535,0.0005418453,0.0006785189,0.003200228,0.0022047532,0.006163215,0.0012129211,0.00213137,0.0017487936],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005489592,0.00047043108,0.3016918,0.0041342797,0.0028868369,0.0013388183,0.008079335,0.012605397,0.0600242,0.08159627,0.035425812,0.48625728],"study_design_scores_gemma":[0.00095598673,0.002158909,0.32007825,0.004750404,0.0021813621,0.003686334,0.008445597,0.08769398,0.060309377,0.31023452,0.19860426,0.00090113474],"about_ca_topic_score_codex":0.0017080293,"about_ca_topic_score_gemma":0.004114991,"teacher_disagreement_score":0.06297506,"about_ca_system_score_codex":0.00088294456,"about_ca_system_score_gemma":0.0009939579,"threshold_uncertainty_score":0.33304793},"labels":[],"label_agreement":null},{"id":"W2343492868","doi":"10.1128/jcm.03275-15","title":"Detection of Human Herpesvirus 6B (HHV-6B) Reactivation in Hematopoietic Cell Transplant Recipients with Inherited Chromosomally Integrated HHV-6A by Droplet Digital PCR","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute; National Institutes of Health; National Institute of Allergy and Infectious Diseases; HHV-6 Foundation","keywords":"Human herpesvirus 6; Virology; Digital polymerase chain reaction; Biology; Hematopoietic cell; Bone marrow transplant; Polymerase chain reaction; Haematopoiesis; Herpesviridae; Immunology; Genetics; Stem cell; Virus; Viral disease; Bone marrow transplantation; Bone marrow; Gene","score_opus":0.031186498294727378,"score_gpt":0.3294845491663366,"score_spread":0.29829805087160927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343492868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99274933,0.0005505123,0.0055226707,0.000052676107,0.000016771408,0.00005372873,0.00016279942,0.00008064338,0.0008107564],"genre_scores_gemma":[0.9949484,0.00022477016,0.0044188728,0.000048297265,0.0000082599145,0.000015790889,0.000098008175,0.00000522687,0.00023238467],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995115,0.00009355948,0.000054753866,0.00012862847,0.0001641173,0.000047506746],"domain_scores_gemma":[0.99946886,0.00021701829,0.00015395491,0.000046924102,0.000059635826,0.000053530315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006887318,0.00021917044,0.00019414298,0.000628109,0.00018116519,0.00052545633,0.000191785,0.00029906727,0.00080674794],"category_scores_gemma":[0.0014755419,0.00014015645,0.000107628475,0.00024599538,0.00034560444,0.0003069247,0.00029716777,0.00037951279,0.00019478398],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071712444,0.00018996562,0.2944403,0.000094565,0.000033793553,0.0008525258,0.00039426747,0.00024653669,0.6657111,0.00021080364,0.00021412493,0.036894944],"study_design_scores_gemma":[0.000049897444,0.001981039,0.2591058,0.000046227226,0.000068023146,0.012466441,0.0005292737,0.006559027,0.7168355,0.00032183278,0.0020133741,0.000023622066],"about_ca_topic_score_codex":0.00036951865,"about_ca_topic_score_gemma":0.0003606858,"teacher_disagreement_score":0.00080674794,"about_ca_system_score_codex":0.00016657254,"about_ca_system_score_gemma":0.00011403319,"threshold_uncertainty_score":0.0036423802},"labels":[],"label_agreement":null},{"id":"W2401630927","doi":"10.1128/jcm.00262-16","title":"Evaluation of Molecular Methods for Identification of Salmonella Serovars","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Salmonella; Serotype; Genotyping; Biology; Salmonella enteritidis; Outbreak; Molecular epidemiology; Microbiology; Virology; Genotype; Genetics; Bacteria; Gene","score_opus":0.16565235090186084,"score_gpt":0.4724840355416637,"score_spread":0.3068316846398028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401630927","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7296379,0.064951785,0.18568842,0.0016237532,0.0009435864,0.0028833237,0.003993909,0.0005412717,0.009735989],"genre_scores_gemma":[0.67577356,0.024818541,0.2879837,0.00081272627,0.00034154992,0.0019729142,0.004175634,0.00012188702,0.003999429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9631842,0.017332826,0.0027058555,0.0037748537,0.0123387,0.0006635745],"domain_scores_gemma":[0.9746551,0.0120679485,0.0043647545,0.0018110315,0.0067220894,0.00037912527],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.020787682,0.0022363884,0.0009797451,0.005057423,0.00043004597,0.00160045,0.0020641447,0.0022336778,0.0011968657],"category_scores_gemma":[0.021797175,0.0007343517,0.00094299007,0.0023531981,0.0010839088,0.0014847245,0.000995911,0.001065735,0.0010596002],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020879463,0.0025442299,0.11122359,0.0039374474,0.0011001392,0.00013626614,0.0003071334,0.006152195,0.7042836,0.0011541785,0.0009404508,0.16613282],"study_design_scores_gemma":[0.00021746114,0.027962971,0.18139388,0.0009176383,0.0012088269,0.0014739067,0.0006482938,0.029873442,0.73744625,0.001108846,0.017497787,0.0002506212],"about_ca_topic_score_codex":0.0015605994,"about_ca_topic_score_gemma":0.0020451117,"teacher_disagreement_score":0.020787682,"about_ca_system_score_codex":0.0010140477,"about_ca_system_score_gemma":0.0007098094,"threshold_uncertainty_score":0.10993713},"labels":[],"label_agreement":null},{"id":"W2411643114","doi":"10.1128/jcm.00419-16","title":"PCR-Based Serotyping of Streptococcus pneumoniae from Culture-Negative Specimens: Novel Primers for Detection of Serotypes within Serogroup 18","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Serotype; Streptococcus pneumoniae; Biology; Microbiology; Virology; Streptococcaceae; Polymerase chain reaction; Gene; Genetics; Antibiotics","score_opus":0.07908602359804348,"score_gpt":0.37943292152354896,"score_spread":0.3003468979255055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2411643114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80130523,0.0035863812,0.18846816,0.00033764011,0.0003157307,0.0007468504,0.0019354025,0.00087123585,0.002433354],"genre_scores_gemma":[0.6314671,0.0020945293,0.36069122,0.00040710618,0.00007410007,0.000544972,0.0013653216,0.0000743603,0.0032812997],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988702,0.00020227936,0.00020134613,0.0003412493,0.00025303112,0.00013180923],"domain_scores_gemma":[0.9980715,0.00067809154,0.0004412466,0.00010439666,0.00053317496,0.00017158933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001056783,0.000977294,0.0007443449,0.0009464893,0.00016263836,0.00057148834,0.0004755999,0.00060682395,0.0009657182],"category_scores_gemma":[0.002352661,0.00062318845,0.0003733656,0.00043447744,0.0004121674,0.00048667414,0.0003353367,0.0008354353,0.0006309995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003494056,0.00007744642,0.009126924,0.00022651744,0.000025178926,0.00015644965,0.00024763908,0.00029636538,0.9648868,0.00013354425,0.00022469058,0.024248945],"study_design_scores_gemma":[0.00009478348,0.0014970038,0.027436137,0.00015148133,0.00013532043,0.003909841,0.0001880945,0.007890738,0.9499579,0.00030915925,0.008359597,0.00006994348],"about_ca_topic_score_codex":0.0006283724,"about_ca_topic_score_gemma":0.001832416,"teacher_disagreement_score":0.001056783,"about_ca_system_score_codex":0.0002870007,"about_ca_system_score_gemma":0.0004815758,"threshold_uncertainty_score":0.005588889},"labels":[],"label_agreement":null},{"id":"W2436658791","doi":"10.1128/jcm.00578-16","title":"Low Utility of Pediatric Isolator Blood Culture System for Detection of Fungemia in Children: a 10-Year Review","year":2016,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Fungemia; Blood culture; Malassezia; Dimorphic fungus; Medicine; Microbiology; Pediatrics; Biology; Clinical microbiology; Mycosis; Internal medicine; Yeast; Surgery; Antibiotics","score_opus":0.04725334780634643,"score_gpt":0.3998902628330765,"score_spread":0.35263691502673006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2436658791","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006989526,0.99191356,0.0002083404,0.00023803207,0.00012020205,0.000010228064,0.00008282065,0.0000096087615,0.0004277386],"genre_scores_gemma":[0.048668507,0.94991153,0.00054457056,0.00037584757,0.00020481487,0.00001767917,0.00018407646,0.0000110066185,0.000082025814],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99421906,0.0010117716,0.0023414402,0.0008193018,0.0014472692,0.00016117186],"domain_scores_gemma":[0.9630318,0.019605184,0.0078120623,0.0007856749,0.008196115,0.00056913856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0052886764,0.00056776655,0.001332482,0.0072843833,0.0003740145,0.0019749796,0.0013187365,0.0013406273,0.00069109123],"category_scores_gemma":[0.01839452,0.0006584031,0.0012320451,0.0062595243,0.0011596113,0.0023510375,0.0005970812,0.0011240772,0.00038728872],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049141893,0.0000876148,0.16891228,0.05426616,0.001730501,0.004805705,0.0012664588,0.0004293222,0.0022007145,0.000813723,0.0118239205,0.7531722],"study_design_scores_gemma":[0.00008224126,0.0011907708,0.4546293,0.09591685,0.010004087,0.110104494,0.003163145,0.0013231639,0.0066386475,0.00045948557,0.31620684,0.00028098424],"about_ca_topic_score_codex":0.0042428966,"about_ca_topic_score_gemma":0.00471177,"teacher_disagreement_score":0.0072843833,"about_ca_system_score_codex":0.0016608688,"about_ca_system_score_gemma":0.0028784315,"threshold_uncertainty_score":0.02796954},"labels":[],"label_agreement":null},{"id":"W2460503493","doi":"10.1128/jcm.01040-16","title":"Automatic Digital Analysis of Chromogenic Media for Vancomycin-Resistant-Enterococcus Screens Using Copan WASPLab","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Regional Laboratory Medicine Program; Hamilton Health Sciences; Université Laval","funders":"","keywords":"Chromogenic; Enterococcus; Vancomycin; Microbiology; Medicine; Biology; Bacteria; Chemistry; Antibiotics; Chromatography; Staphylococcus aureus","score_opus":0.06382803396320497,"score_gpt":0.3689838492109858,"score_spread":0.30515581524778085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2460503493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84204227,0.0012489298,0.1425946,0.0002088461,0.00019192726,0.0013005021,0.0012603493,0.0044212453,0.0067313346],"genre_scores_gemma":[0.666569,0.00082416035,0.32459295,0.00028131096,0.00005878843,0.001163226,0.001972029,0.000401647,0.004136806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99743575,0.0007721037,0.00024167713,0.00040927003,0.0010415445,0.00009954238],"domain_scores_gemma":[0.99717075,0.0011522273,0.00036898884,0.00030161982,0.00089615356,0.00011030937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026122674,0.0007924885,0.00048283872,0.0039351024,0.00036708632,0.00072350795,0.00073368195,0.00038151935,0.0025169356],"category_scores_gemma":[0.0050127856,0.00039156273,0.0004250276,0.0012547546,0.00041887694,0.0004306665,0.0007512258,0.00036823616,0.0009311763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032311962,0.00059234473,0.1527814,0.0007093175,0.00022186272,0.00070867,0.00079237204,0.0013720919,0.63230586,0.00097059517,0.0036596656,0.20265464],"study_design_scores_gemma":[0.00014592409,0.0015189986,0.22578019,0.00014772208,0.00024871505,0.002582136,0.00032442578,0.056941185,0.69785774,0.000400241,0.013913754,0.00013895308],"about_ca_topic_score_codex":0.001027705,"about_ca_topic_score_gemma":0.0015599063,"teacher_disagreement_score":0.0039351024,"about_ca_system_score_codex":0.00036020795,"about_ca_system_score_gemma":0.00044023574,"threshold_uncertainty_score":0.013815105},"labels":[],"label_agreement":null},{"id":"W2467572887","doi":"10.1128/jcm.03254-15","title":"Closing the Brief Case: Cryptococcus gattii Meningitis with Ventriculitis","year":2016,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ventriculitis; Meningitis; Cryptococcus gattii; Cryptococcosis; Fungemia; Closing (real estate); Biology; Cryptococcus; Microbiology; Medicine; Virology; Pediatrics; Antifungal","score_opus":0.02644706931217096,"score_gpt":0.38476809045365346,"score_spread":0.3583210211414825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2467572887","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004822284,0.014728682,0.00030241138,0.16860665,0.8131943,0.000035542762,0.00005892863,0.00009524245,0.0024960272],"genre_scores_gemma":[0.0030456185,0.011286794,0.00025167977,0.08674992,0.8955291,0.000029361006,0.000041195526,0.00003157959,0.0030348403],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.9970445,0.00077565113,0.00057401415,0.0004457878,0.0008953862,0.0002647967],"domain_scores_gemma":[0.9913954,0.005016276,0.00066258456,0.00025735833,0.0013835562,0.0012848219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035792666,0.0033119428,0.0031358819,0.0022088322,0.002621608,0.0039835107,0.003089733,0.031665865,0.0051275175],"category_scores_gemma":[0.022617688,0.001228697,0.0021652419,0.0008773843,0.002894029,0.00747089,0.001895615,0.029403752,0.0043237023],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058084413,0.000033163495,0.00025827595,0.00038626106,0.000029427749,0.008343633,0.00008371154,0.00007514303,0.00012152632,0.00064000953,0.97981447,0.010156221],"study_design_scores_gemma":[0.00019611239,0.0001689853,0.0014276538,0.0024363152,0.00014889905,0.034942824,0.00050153636,0.0005033776,0.00029440096,0.003408168,0.95587957,0.00009216962],"about_ca_topic_score_codex":0.0013196706,"about_ca_topic_score_gemma":0.0026262554,"teacher_disagreement_score":0.031665865,"about_ca_system_score_codex":0.0022411933,"about_ca_system_score_gemma":0.0019809569,"threshold_uncertainty_score":0.018929243},"labels":[],"label_agreement":null},{"id":"W2474114051","doi":"10.1128/jcm.00950-16","title":"Antimicrobial Stewardship in the Microbiology Laboratory: Impact of Selective Susceptibility Reporting on Ciprofloxacin Utilization and Susceptibility of Gram-Negative Isolates to Ciprofloxacin in a Hospital Setting","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; St Joseph's Health Centre","funders":"","keywords":"Ciprofloxacin; Medicine; Nitrofurantoin; Antimicrobial stewardship; Antibiotics; Microbiology; Pseudomonas aeruginosa; Internal medicine; Amoxicillin; Antibiotic resistance; Biology; Bacteria","score_opus":0.0445343201637094,"score_gpt":0.3800586259610721,"score_spread":0.3355243057973627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474114051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989304,0.00043499915,0.00010652903,0.00021007689,0.000006942452,0.000007866393,0.000026045087,0.000006521693,0.00027073114],"genre_scores_gemma":[0.99961334,0.00009511324,0.00014938832,0.00006613179,0.000011399203,0.0000054297334,0.000020915935,0.0000017330289,0.000036594414],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.989532,0.006417733,0.00084583025,0.00055601133,0.0017073193,0.0009410557],"domain_scores_gemma":[0.96075124,0.014374932,0.017210137,0.0011342627,0.002858517,0.003670871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005133736,0.00025640434,0.00031704537,0.00044874894,0.0003748862,0.0010470235,0.0006100953,0.00052339793,0.0009937325],"category_scores_gemma":[0.03713455,0.00018868838,0.0005813811,0.0006338807,0.00045988947,0.00075731496,0.0010752999,0.00062867795,0.000100105804],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002259624,0.0010506694,0.9460843,0.00018415929,0.00028229854,0.00032155128,0.0007716616,0.00044515473,0.0015572591,0.000054515105,0.00030853762,0.046680197],"study_design_scores_gemma":[0.000024671413,0.0017360025,0.996014,0.000039048005,0.00008380097,0.00022517363,0.00042960164,0.00061708345,0.00062552403,0.000020614703,0.0001725411,0.000012035831],"about_ca_topic_score_codex":0.0072746277,"about_ca_topic_score_gemma":0.008155407,"teacher_disagreement_score":0.0072746277,"about_ca_system_score_codex":0.0013677465,"about_ca_system_score_gemma":0.0021990875,"threshold_uncertainty_score":0.027150095},"labels":[],"label_agreement":null},{"id":"W2474879722","doi":"10.1128/jcm.00349-16","title":"Application of Whole-Genome Sequencing Data for O-Specific Antigen Analysis and <i>In Silico</i> Serotyping of Pseudomonas aeruginosa Isolates","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Government of Canada; Villum Fonden","keywords":"Serotype; Pseudomonas aeruginosa; In silico; Biology; Genome; Whole genome sequencing; Microbiology; Pseudomonadaceae; Antigen; Genetics; Computational biology; Virology; Bacteria; Gene","score_opus":0.03925352533596067,"score_gpt":0.3207984342400063,"score_spread":0.28154490890404565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2474879722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8030403,0.001076346,0.17578727,0.0004935151,0.00009450032,0.0002455808,0.013925014,0.0015285522,0.003808921],"genre_scores_gemma":[0.7929936,0.00133387,0.1830107,0.0002482079,0.00003563254,0.00019859873,0.020598255,0.0002894512,0.001291717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993844,0.00018572621,0.000061987164,0.00016861898,0.00015101495,0.00004816428],"domain_scores_gemma":[0.9991929,0.00028693862,0.00017095142,0.00016273624,0.00013091222,0.000055558103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075716013,0.0004912564,0.00048802944,0.0010601185,0.00030941083,0.000764316,0.00026579382,0.00047228846,0.00080888637],"category_scores_gemma":[0.0016568098,0.0002709466,0.0005013518,0.0008201231,0.00015484336,0.00037854296,0.0005157138,0.0005282643,0.0005269641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024751393,0.00014723782,0.02581374,0.0002700706,0.00010379094,0.00025724494,0.00021221282,0.0050542685,0.90912575,0.000755793,0.0010161217,0.056996193],"study_design_scores_gemma":[0.000038751026,0.0005766196,0.19426346,0.00015334648,0.00024551715,0.0012795671,0.00052541733,0.0947539,0.6699002,0.003070109,0.035086542,0.00010672353],"about_ca_topic_score_codex":0.001899983,"about_ca_topic_score_gemma":0.0028465807,"teacher_disagreement_score":0.001899983,"about_ca_system_score_codex":0.00025132333,"about_ca_system_score_gemma":0.0004970881,"threshold_uncertainty_score":0.0040042996},"labels":[],"label_agreement":null},{"id":"W2494487560","doi":"10.1128/jcm.03274-15","title":"Novel Method Based on Real-Time Cell Analysis for Drug Susceptibility Testing of Herpes Simplex Virus and Human Cytomegalovirus","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Herpes simplex virus; Virology; Human cytomegalovirus; Cytomegalovirus; Herpesviridae; Simplexvirus; Simplex; Virus; Drug; Biology; Medicine; Viral disease; Pharmacology; Mathematics","score_opus":0.09556098334562846,"score_gpt":0.4324585408181902,"score_spread":0.3368975574725617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2494487560","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07542148,0.0077705807,0.9031263,0.0005547497,0.0009879565,0.0007990575,0.001976666,0.0045141065,0.0048491806],"genre_scores_gemma":[0.2276056,0.005740798,0.7497306,0.00081300986,0.00026789977,0.002748684,0.0026617732,0.00032566898,0.010105968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9951486,0.00077988097,0.00031307092,0.0012685462,0.0023061375,0.00018374796],"domain_scores_gemma":[0.9983853,0.00052491773,0.00027342152,0.00020092275,0.0005308584,0.00008462694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018722668,0.0016461547,0.0011762169,0.0019890233,0.00041726566,0.0011119631,0.0014216522,0.0016019035,0.002213735],"category_scores_gemma":[0.0020977745,0.0006737467,0.00083230465,0.0013352437,0.0006249135,0.0012104033,0.0010805262,0.0018198988,0.0018396062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017298122,0.00014318906,0.0014278167,0.00030030502,0.000043235494,0.0000965532,0.00010896947,0.00029646122,0.95600593,0.00049101195,0.0010393057,0.039874274],"study_design_scores_gemma":[0.0000347278,0.00053400535,0.0032303412,0.000033284676,0.00010169097,0.0010336637,0.00008807303,0.0140540805,0.96827155,0.00037502087,0.01212258,0.00012091301],"about_ca_topic_score_codex":0.00054134737,"about_ca_topic_score_gemma":0.00079259457,"teacher_disagreement_score":0.002213735,"about_ca_system_score_codex":0.00047172798,"about_ca_system_score_gemma":0.00061026536,"threshold_uncertainty_score":0.009901643},"labels":[],"label_agreement":null},{"id":"W2507047328","doi":"10.1128/jcm.00422-16","title":"Phenotypic H-Antigen Typing by Mass Spectrometry Combined with Genetic Typing of H Antigens, O Antigens, and Toxins by Whole-Genome Sequencing Enhances Identification of Escherichia coli Isolates","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta; Ste. Anne's Hospital; Public Health Agency of Canada; Nova Scotia Health Authority; University of Manitoba","funders":"Public Health Agency of Canada","keywords":"Typing; Biology; Serotype; Escherichia coli; Antigen; Shiga toxin; H antigen; Genetics; Genome; Gene; Virulence; Microbiology","score_opus":0.017226414604472506,"score_gpt":0.30084229000712565,"score_spread":0.28361587540265315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2507047328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97593915,0.0005211293,0.021500677,0.0001088421,0.000020031757,0.00008126459,0.0004413811,0.0002550719,0.0011324647],"genre_scores_gemma":[0.93955016,0.00043448326,0.057968397,0.00017575751,0.00005102879,0.00005534898,0.0008884345,0.000052640735,0.0008236454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988159,0.00030683438,0.00009688611,0.0002700189,0.00039601926,0.00011436526],"domain_scores_gemma":[0.999278,0.0002152329,0.00017967884,0.0001151806,0.00012494643,0.00008698899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084422756,0.0005049885,0.0006824704,0.0010877148,0.00014840186,0.000910721,0.00033026887,0.00048259666,0.0005602305],"category_scores_gemma":[0.0012891982,0.00038935046,0.0004412466,0.0006319685,0.00025416102,0.0006083217,0.001088192,0.00045068018,0.00053361274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020014953,0.000080957536,0.015922941,0.00004570203,0.000041849802,0.000047937494,0.000036185877,0.00021908853,0.970997,0.000029263136,0.000055440498,0.012323455],"study_design_scores_gemma":[0.000031942312,0.0009420738,0.28286907,0.000033970526,0.00032132174,0.0015809637,0.00019853354,0.0176889,0.69374603,0.00027126598,0.0022682694,0.000047694237],"about_ca_topic_score_codex":0.00049554964,"about_ca_topic_score_gemma":0.00096726016,"teacher_disagreement_score":0.0010877148,"about_ca_system_score_codex":0.0001173892,"about_ca_system_score_gemma":0.00020314669,"threshold_uncertainty_score":0.0044647455},"labels":[],"label_agreement":null},{"id":"W2511912923","doi":"10.1128/jcm.01025-16","title":"Coinfection and Emergence of Rifamycin Resistance during a Recurrent Clostridium difficile Infection","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Nottingham; Génome Québec; National Institute for Health and Care Research; Genome Canada","keywords":"Clostridium difficile; Pseudomembranous colitis; Ribotyping; Coinfection; Moxifloxacin; Diarrhea; Microbiology; Biology; Colitis; Medicine; Genotype; Virology; Antibiotics; Internal medicine; Gene","score_opus":0.04341743567162094,"score_gpt":0.37389487803052945,"score_spread":0.3304774423589085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2511912923","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99631244,0.0011873086,0.00026550697,0.00039316586,0.00003638217,0.000024720926,0.00003775337,0.000019696576,0.0017230803],"genre_scores_gemma":[0.9991918,0.0001948632,0.00010383837,0.00021877029,0.000050155904,0.0000067281712,0.00005179419,0.0000040671307,0.00017800255],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99902534,0.00023412377,0.00011382327,0.00018366543,0.00015153737,0.00029151654],"domain_scores_gemma":[0.99751806,0.00064878014,0.0009289456,0.00014385342,0.00025189965,0.0005085684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000522672,0.00036679074,0.000761316,0.00081296754,0.0010673114,0.000857716,0.000309913,0.001223676,0.0022041071],"category_scores_gemma":[0.0047791013,0.00026153322,0.00037048687,0.00052119,0.00065412157,0.0007255735,0.0007318426,0.0012850545,0.0004748887],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012678436,0.0004361042,0.8512896,0.00009782874,0.000075372605,0.12069212,0.0018866394,0.00015483946,0.007149091,0.00036102283,0.0014232892,0.015166348],"study_design_scores_gemma":[0.00007557148,0.002008794,0.7696367,0.00018664385,0.00017174755,0.21853614,0.0022115626,0.0016475191,0.0023677,0.0004355795,0.0026295073,0.00009257595],"about_ca_topic_score_codex":0.001967476,"about_ca_topic_score_gemma":0.0017145608,"teacher_disagreement_score":0.0022041071,"about_ca_system_score_codex":0.00058479706,"about_ca_system_score_gemma":0.00041146923,"threshold_uncertainty_score":0.007373512},"labels":[],"label_agreement":null},{"id":"W2515985765","doi":"10.1128/jcm.01373-16","title":"Pooled Nucleic Acid Amplification Test for Screening of Stool Specimens for Shiga Toxin-Producing Escherichia coli","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Provincial Health Services Authority; University of British Columbia","funders":"","keywords":"Microbiology; Escherichia coli; Nucleic acid; Biology; Shiga toxin; Toxin; Shiga-like toxin; Virology; Genetics; Gene","score_opus":0.05966227538747216,"score_gpt":0.37762813735503087,"score_spread":0.3179658619675587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2515985765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9623189,0.0015941736,0.033221282,0.00007691791,0.000068814625,0.0008571214,0.0004931116,0.00025973216,0.0011099278],"genre_scores_gemma":[0.95198685,0.00037123536,0.04561747,0.000093220966,0.000022150052,0.00038499833,0.0007566523,0.000020727242,0.0007467822],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851555,0.00052930834,0.000135969,0.00026312892,0.00049276307,0.00006330308],"domain_scores_gemma":[0.99849844,0.00041508503,0.00023614863,0.00015270707,0.00057343114,0.00012409953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002316963,0.0006389886,0.000517434,0.00089437654,0.00031689822,0.00042324094,0.000466982,0.00045098466,0.0014020302],"category_scores_gemma":[0.0038333081,0.0004100089,0.00039549996,0.00039577452,0.00020158495,0.00037489118,0.00040989261,0.00029776167,0.0005177445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0078106862,0.0025261003,0.32846412,0.000617834,0.00038457295,0.0009887522,0.00048260414,0.0019304,0.5128095,0.00018118274,0.001409379,0.14239486],"study_design_scores_gemma":[0.0005338035,0.06807158,0.45554322,0.00026901727,0.0009767866,0.008913794,0.0007426368,0.033955876,0.42123407,0.0003186596,0.0092790425,0.00016158864],"about_ca_topic_score_codex":0.0012089775,"about_ca_topic_score_gemma":0.0023665032,"teacher_disagreement_score":0.002316963,"about_ca_system_score_codex":0.00030642533,"about_ca_system_score_gemma":0.0005793234,"threshold_uncertainty_score":0.012253463},"labels":[],"label_agreement":null},{"id":"W2517721391","doi":"10.1128/jcm.00765-16","title":"Multicenter Evaluation of BD Max Enteric Parasite Real-Time PCR Assay for Detection of Giardia duodenalis, Cryptosporidium hominis, Cryptosporidium parvum, and Entamoeba histolytica","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada)","funders":"","keywords":"Entamoeba histolytica; Cryptosporidium parvum; Cryptosporidium; Giardia; Biology; Microbiology; Diarrhea; Multiplex; Gold standard (test); Virology; Parasitology; Feces; Serology; Trichrome stain; Parasite hosting; Medicine; Antibody; Immunology; Gastroenterology; Internal medicine","score_opus":0.03187101070992018,"score_gpt":0.34354417463327236,"score_spread":0.3116731639233522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2517721391","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99488693,0.00030572043,0.0030676643,0.000040627005,0.00001588405,0.0002607783,0.00065622805,0.00006855321,0.00069758215],"genre_scores_gemma":[0.99191463,0.00008163149,0.0060696364,0.000073259114,0.000012804507,0.00018756995,0.0013226314,0.000012884913,0.00032503158],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99758923,0.000958372,0.00018352669,0.0006263357,0.0005062645,0.0001362851],"domain_scores_gemma":[0.99890137,0.00022034471,0.00022356333,0.0000917,0.00044432393,0.00011883191],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034016974,0.0006565683,0.00032532416,0.00042541046,0.00029312682,0.00039406025,0.0003587332,0.00028950733,0.000908681],"category_scores_gemma":[0.0021525219,0.0003678984,0.00019565772,0.00036317282,0.00034706743,0.00034411164,0.00040186048,0.00036848529,0.00028468156],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010463166,0.002202229,0.7400089,0.00019694048,0.00019035116,0.00030093998,0.0006975424,0.00081739086,0.19548915,0.00019894939,0.0012935672,0.048140902],"study_design_scores_gemma":[0.0009454903,0.035159912,0.86754274,0.000049198006,0.0002776443,0.0023519197,0.00042171957,0.008411158,0.07864384,0.000090183144,0.006066748,0.000039411174],"about_ca_topic_score_codex":0.00067408424,"about_ca_topic_score_gemma":0.0008974509,"teacher_disagreement_score":0.0034016974,"about_ca_system_score_codex":0.00035648432,"about_ca_system_score_gemma":0.0004535619,"threshold_uncertainty_score":0.017990112},"labels":[],"label_agreement":null},{"id":"W2549322967","doi":"10.1128/jcm.01879-16","title":"Rapid Identification of Measles Virus Vaccine Genotype by Real-Time PCR","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Virology; Measles virus; Genotype; Measles; Biology; Morbillivirus; Identification (biology); Measles vaccine; Virus; Real-time polymerase chain reaction; Vaccination; Genetics; Gene","score_opus":0.038047189362088805,"score_gpt":0.3626179481912386,"score_spread":0.3245707588291498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2549322967","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.38617173,0.0050202566,0.58942425,0.00038281965,0.00053362636,0.0018466061,0.006946697,0.0044814753,0.0051925876],"genre_scores_gemma":[0.28004697,0.002525276,0.7049792,0.00044264403,0.00013117005,0.002095372,0.00526498,0.00036143424,0.0041530128],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9935767,0.0018585365,0.0006383056,0.0019333271,0.0015975251,0.00039563095],"domain_scores_gemma":[0.9957742,0.001942808,0.00070995535,0.00040823637,0.0010732136,0.00009156928],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0046479106,0.001360941,0.0014580847,0.0023320932,0.00037370404,0.0015403983,0.0011679571,0.0010779703,0.0016497861],"category_scores_gemma":[0.006383389,0.0009255762,0.0009174175,0.0012274805,0.00078007154,0.0011716556,0.00062840956,0.0014889472,0.0019171132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00051201147,0.00015001716,0.009386907,0.00037786167,0.000058768517,0.00010755581,0.00036534757,0.00085110834,0.95907676,0.00033603385,0.00045577536,0.028321924],"study_design_scores_gemma":[0.000058695037,0.00082166103,0.018278154,0.00012330522,0.0001752168,0.00050672,0.00023998614,0.017162727,0.9519572,0.00073874317,0.009799748,0.00013787029],"about_ca_topic_score_codex":0.00059857464,"about_ca_topic_score_gemma":0.001313959,"teacher_disagreement_score":0.0046479106,"about_ca_system_score_codex":0.00045001262,"about_ca_system_score_gemma":0.0004663408,"threshold_uncertainty_score":0.024580777},"labels":[],"label_agreement":null},{"id":"W2552858295","doi":"10.1128/jcm.01615-16","title":"Serotype Distribution, Population Structure, and Antimicrobial Resistance of Group B Streptococcus Strains Recovered from Colonized Pregnant Women","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario","funders":"","keywords":"Clindamycin; Tetracycline; Erythromycin; Serotype; Biology; Microbiology; Penicillin; Population; Multilocus sequence typing; Antibiotic resistance; Streptococcus; Group B; Typing; Virology; Antibiotics; Genotype; Medicine; Genetics; Bacteria; Internal medicine; Gene","score_opus":0.020906838206310493,"score_gpt":0.3160827635851783,"score_spread":0.2951759253788678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2552858295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995529,0.00007087944,0.00004731654,0.000009139609,9.360753e-7,0.0000048495913,0.00021076325,0.0000021246387,0.00010109243],"genre_scores_gemma":[0.9992118,0.00012816238,0.00013294384,0.000018551793,0.0000023883972,0.000006439516,0.00040044845,0.0000016735288,0.00009751883],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99965775,0.00004493815,0.000028577315,0.00011491612,0.00007919497,0.00007457601],"domain_scores_gemma":[0.9996,0.00005033945,0.00013297875,0.000041413357,0.000092914284,0.00008234364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020758699,0.00028722873,0.00021984812,0.000976583,0.0003959379,0.0004763585,0.0003200376,0.00027745555,0.00041372786],"category_scores_gemma":[0.0012263148,0.00028009346,0.0002008645,0.0010967003,0.00050015945,0.00014649944,0.00036080822,0.00019273808,0.00011152137],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004038826,0.000006414126,0.99518484,0.0000064918263,0.000019602123,0.00013430836,0.00062693335,0.000056059383,0.0025670556,0.000009539328,0.000054950873,0.0012933319],"study_design_scores_gemma":[0.0000011435974,0.000030148763,0.9988925,0.0000031937886,0.000007652154,0.000188465,0.00046379457,0.00013314099,0.00018531729,0.0000035013672,0.00008867538,0.0000024217763],"about_ca_topic_score_codex":0.2749397,"about_ca_topic_score_gemma":0.25701287,"teacher_disagreement_score":0.2749397,"about_ca_system_score_codex":0.0014618476,"about_ca_system_score_gemma":0.00081093697,"threshold_uncertainty_score":0.5466787},"labels":[],"label_agreement":null},{"id":"W2556867267","doi":"10.1128/jcm.01902-16","title":"Assessment of Microbiological Diagnosis of Active Pulmonary Tuberculosis: Culture on Liquid Medium with or without Solid Medium","year":2016,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Liquid medium; Liquid culture; Microbiology; Tuberculosis; Medicine; Pulmonary tuberculosis; Mycobacterium tuberculosis; Chromatography; Chemistry; Pathology; Biology","score_opus":0.05383185584119443,"score_gpt":0.41439119531231255,"score_spread":0.3605593394711181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2556867267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8666121,0.044539146,0.020162951,0.028527215,0.004006477,0.00046469303,0.00066525175,0.00044019078,0.03458203],"genre_scores_gemma":[0.9778511,0.006151504,0.0076889405,0.004586294,0.0016674121,0.00009013781,0.00030718793,0.000031127212,0.0016263009],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9959877,0.0015669942,0.00042230036,0.00025477953,0.0015115537,0.00025659177],"domain_scores_gemma":[0.9954852,0.002545778,0.00057048444,0.00020832826,0.0007779368,0.00041241484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002414926,0.0007371897,0.0012034137,0.0012725445,0.00047036796,0.0013211865,0.00090198073,0.0029534863,0.0016588531],"category_scores_gemma":[0.010071419,0.00027876036,0.0003072851,0.0008579044,0.0008389577,0.0010239674,0.000668971,0.0017240971,0.0012818659],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009469029,0.0014355737,0.5250002,0.0018606632,0.00020602353,0.08222638,0.0020861384,0.00046054865,0.20236647,0.001019783,0.023972474,0.1498967],"study_design_scores_gemma":[0.00039491145,0.016114853,0.43590268,0.001742426,0.00072363846,0.31406346,0.0076544234,0.014812499,0.15223119,0.0030032923,0.05309053,0.00026609525],"about_ca_topic_score_codex":0.0004699899,"about_ca_topic_score_gemma":0.0007495625,"teacher_disagreement_score":0.0029534863,"about_ca_system_score_codex":0.0005178571,"about_ca_system_score_gemma":0.0002899883,"threshold_uncertainty_score":0.012771487},"labels":[],"label_agreement":null},{"id":"W2560301785","doi":"10.1128/jcm.02087-16","title":"Emergence of <i>mmpT5</i> Variants during Bedaquiline Treatment of Mycobacterium intracellulare Lung Disease","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; Government of Canada; Amon G. Carter Foundation","keywords":"Bedaquiline; Clofazimine; TetR; Nonsynonymous substitution; Biology; Mycobacterium tuberculosis; Microbiology; Operon; Mycobacterium; Tuberculosis; Efflux; Mutant; Gene; Genetics; Bacteria; Medicine; Genome; Immunology; Leprosy; Pathology","score_opus":0.040112783920431605,"score_gpt":0.37638691543751596,"score_spread":0.33627413151708435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560301785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993148,0.00012309352,0.00015282902,0.000038297836,0.0000045958163,0.000012034409,0.00010802096,0.000008985164,0.00023733913],"genre_scores_gemma":[0.9994966,0.0000361187,0.00014810955,0.00004063437,0.0000044706403,0.000003352128,0.00013611584,0.0000047749872,0.00012983904],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99968517,0.000040607756,0.00003368036,0.00009713852,0.00007406829,0.000069209505],"domain_scores_gemma":[0.99969006,0.000056563928,0.00010788072,0.000018387907,0.000053819578,0.00007328228],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015865693,0.00024656832,0.00035978635,0.00021967673,0.00022053381,0.00041607468,0.0002134302,0.0005567354,0.0005820761],"category_scores_gemma":[0.0009695537,0.00014443976,0.00035789117,0.00022511244,0.00023420168,0.00015699044,0.00017193511,0.00038893905,0.00017323729],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022153475,0.00031006662,0.32807583,0.00011381869,0.00011651137,0.019065654,0.0008806297,0.0005129594,0.624244,0.00020305417,0.0006632006,0.0235989],"study_design_scores_gemma":[0.00007903277,0.002368904,0.87506014,0.000029504405,0.00013165176,0.031381935,0.0006399851,0.0017866766,0.08644074,0.00006739985,0.001985159,0.000028969964],"about_ca_topic_score_codex":0.002319706,"about_ca_topic_score_gemma":0.0023140921,"teacher_disagreement_score":0.002319706,"about_ca_system_score_codex":0.00039554122,"about_ca_system_score_gemma":0.0001060604,"threshold_uncertainty_score":0.004612386},"labels":[],"label_agreement":null},{"id":"W2560754340","doi":"10.1128/jcm.01954-16","title":"Field Validation of SYBR Green- and TaqMan-Based Real-Time PCR Using Biopsy and Swab Samples To Diagnose American Tegumentary Leishmaniasis in an Area Where Leishmania (Viannia) braziliensis Is Endemic","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"TaqMan; Leishmania braziliensis; Leishmaniasis; Biology; Leishmania; Virology; Cutaneous leishmaniasis; Polymerase chain reaction; Real-time polymerase chain reaction; Microbiology; Parasite hosting; Immunology; Gene; Genetics","score_opus":0.07121479812846346,"score_gpt":0.393470640548998,"score_spread":0.3222558424205345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560754340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87196124,0.0022921786,0.12075486,0.00019241161,0.0004000069,0.0011898619,0.0006764065,0.0002237636,0.0023093675],"genre_scores_gemma":[0.8735963,0.0009461406,0.12052882,0.0003134698,0.00008852182,0.001558948,0.0012606584,0.000049191498,0.001657938],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.98844343,0.004002709,0.0010521949,0.0028422854,0.0032072891,0.00045206177],"domain_scores_gemma":[0.9933838,0.002856193,0.0007835316,0.0006148024,0.0021695704,0.000192047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01315231,0.0010653539,0.0007286376,0.0010090927,0.0005550026,0.00071585504,0.00069453084,0.00091642025,0.00089031924],"category_scores_gemma":[0.011884583,0.0008188284,0.0006050178,0.0008684207,0.0015278334,0.00045243767,0.00049462396,0.0007403317,0.0005392074],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002840522,0.0013132178,0.177722,0.0007465803,0.00029039764,0.00028275768,0.0028367154,0.0032628777,0.7625549,0.0010422147,0.00056668604,0.046541102],"study_design_scores_gemma":[0.0005755756,0.019006161,0.1813559,0.0003962099,0.0009474812,0.0031564895,0.0013695738,0.040745918,0.7391275,0.0011337545,0.011981026,0.00020441638],"about_ca_topic_score_codex":0.0016193149,"about_ca_topic_score_gemma":0.0030519292,"teacher_disagreement_score":0.01315231,"about_ca_system_score_codex":0.0005010193,"about_ca_system_score_gemma":0.00087315263,"threshold_uncertainty_score":0.06955695},"labels":[],"label_agreement":null},{"id":"W2561509358","doi":"10.1128/jcm.02052-16","title":"Correction for Alhhazmi et al., Epidemiology of Invasive Group B Streptococcal Disease in Alberta, Canada, from 2003 to 2013","year":2016,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Paragraph; Epidemiology; Column (typography); Medicine; Microbiology; Biology; Veterinary medicine; Virology; Pathology; Mathematics; Computer science; World Wide Web","score_opus":0.03979182158516104,"score_gpt":0.3742265501423614,"score_spread":0.33443472855720036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2561509358","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017189965,0.0017420426,0.00029588424,0.05300733,0.9360849,0.000038998525,0.00666692,0.0002934112,0.0016986983],"genre_scores_gemma":[0.022738803,0.017377691,0.0049132355,0.16210413,0.56422466,0.00055120344,0.026082732,0.002540177,0.1994674],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.995956,0.00044914777,0.0008752204,0.0004319692,0.001823421,0.00046414166],"domain_scores_gemma":[0.9629857,0.0046439944,0.001575705,0.0010476317,0.028393414,0.001353558],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034709084,0.00227779,0.0020442088,0.0042987308,0.002303825,0.0031001419,0.003601229,0.0029838074,0.047885958],"category_scores_gemma":[0.056438982,0.0010546171,0.0020040828,0.0039953794,0.001526726,0.0014349424,0.0013015388,0.0074414136,0.023444217],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001138405,0.0000018963937,0.00006817499,0.000058209367,0.000005181899,0.000029970643,0.000013288452,0.000010200373,0.000005562028,0.00006827434,0.99850166,0.0012261807],"study_design_scores_gemma":[0.00012902298,0.000025245135,0.005726775,0.0011212764,0.00007092262,0.00042285648,0.00019847864,0.00019610436,0.0001356771,0.0005822609,0.99133813,0.00005326372],"about_ca_topic_score_codex":0.34526557,"about_ca_topic_score_gemma":0.3015178,"teacher_disagreement_score":0.65473443,"about_ca_system_score_codex":0.007123236,"about_ca_system_score_gemma":0.014297052,"threshold_uncertainty_score":0.68651175},"labels":[],"label_agreement":null},{"id":"W2561536746","doi":"10.1128/jcm.01649-16","title":"Characterization and Diagnostic Application of Trypanosoma cruzi Trypomastigote Excreted-Secreted Antigens Shed in Extracellular Vesicles Released from Infected Mammalian Cells","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Trypanosoma species research and implications","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia; University of Victoria; McGill University Health Centre; McGill University","funders":"","keywords":"Chagas disease; Trypanosoma cruzi; Biology; Virology; Antigen; Toxoplasmosis; Kinetoplastida; Immunology; Trypanosomiasis; Serology; Leishmaniasis; Antibody; Parasite hosting; Malaria","score_opus":0.03496965295122927,"score_gpt":0.3482528747535959,"score_spread":0.3132832218023666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2561536746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937855,0.0016504716,0.0029630763,0.00004709088,0.000017075776,0.000038076487,0.00050431123,0.000017998105,0.00097638386],"genre_scores_gemma":[0.99146396,0.0010455406,0.0048105433,0.00003281439,0.000010570127,0.000021276832,0.0017546416,0.000010363093,0.00085034873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9999218,0.000014094116,0.00000826634,0.000014869341,0.000026610654,0.0000144609],"domain_scores_gemma":[0.9999329,0.000014700897,0.000010867274,0.0000074258774,0.000017443135,0.000016687682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015048072,0.00023061775,0.00014429977,0.00025653248,0.00011480926,0.00031762867,0.00009350359,0.0001996267,0.00029676463],"category_scores_gemma":[0.00015631007,0.00006442359,0.00018130726,0.00020090817,0.00013269098,0.0001381293,0.00017463155,0.0001930272,0.00024766722],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021701375,0.0000055446662,0.0004291808,0.000014610019,0.000002459865,0.000051320556,0.000009764873,0.000009243221,0.9989548,0.000013499874,0.000005020863,0.00048292102],"study_design_scores_gemma":[0.000009094985,0.00034033417,0.036489487,0.000013823486,0.000028967494,0.0013133652,0.00012976017,0.0010425886,0.95820343,0.00004496768,0.002378363,0.000005812448],"about_ca_topic_score_codex":0.00030408986,"about_ca_topic_score_gemma":0.0003013237,"teacher_disagreement_score":0.00031762867,"about_ca_system_score_codex":0.000096713855,"about_ca_system_score_gemma":0.000095466065,"threshold_uncertainty_score":0.000992775},"labels":[],"label_agreement":null},{"id":"W2562165708","doi":"10.1128/jcm.01296-16","title":"Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Medical Research Council; National Institute for Health and Care Research; Wellcome Trust","keywords":"Biology; Lineage (genetic); Phylogenetic tree; Phylogenetics; Clostridium difficile; Genetics; Genome; Population; Toxin; Gene; Evolutionary biology; Antibiotics","score_opus":0.0511552941836277,"score_gpt":0.380542180420664,"score_spread":0.3293868862370363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562165708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99886,0.00008286226,0.00034145938,0.0000072104494,0.0000012369127,0.000005057996,0.0003696647,0.000004496908,0.00032809438],"genre_scores_gemma":[0.9957325,0.000119167984,0.0010314826,0.000014628397,0.000003102553,0.000011127807,0.002812284,0.000009830562,0.00026588386],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9998555,0.000025404017,0.000009109575,0.000042089356,0.000025480766,0.00004241259],"domain_scores_gemma":[0.99980325,0.000046051042,0.00005892052,0.000018134444,0.000042894826,0.000030859414],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016832855,0.00020118785,0.0001963449,0.0010092999,0.0002012769,0.00037186814,0.00015016638,0.00017984648,0.00091901806],"category_scores_gemma":[0.00026709572,0.00010297164,0.00036375216,0.0011000847,0.00016309759,0.0001072585,0.00027677944,0.00025022516,0.00029196515],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010785167,0.00010187968,0.23966771,0.00011150445,0.00017537996,0.00035715313,0.00065964443,0.0006923855,0.7387362,0.00022609138,0.00018983144,0.018003672],"study_design_scores_gemma":[0.00001573301,0.0002652534,0.9857904,0.000011788854,0.00008008435,0.00063233025,0.00052302,0.0012174108,0.009906018,0.000057618654,0.0014918221,0.000008454162],"about_ca_topic_score_codex":0.002214779,"about_ca_topic_score_gemma":0.002862564,"teacher_disagreement_score":0.002214779,"about_ca_system_score_codex":0.0002448558,"about_ca_system_score_gemma":0.00015394636,"threshold_uncertainty_score":0.00440377},"labels":[],"label_agreement":null},{"id":"W2568936821","doi":"10.1128/jcm.02166-16","title":"A Unique Capsule Locus in the Newly Designated Actinobacillus pleuropneumoniae Serovar 16 and Development of a Diagnostic PCR Assay","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council; Hungarian Scientific Research Fund; Research Councils UK","keywords":"Actinobacillus pleuropneumoniae; Serotype; Biology; Locus (genetics); Microbiology; Polymerase chain reaction; Actinobacillus; Virology; Genetics; Gene; Bacteria","score_opus":0.08466163735999149,"score_gpt":0.37976619839743564,"score_spread":0.29510456103744415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2568936821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9749474,0.0007355691,0.021397406,0.00008234735,0.000057568475,0.000119575656,0.0007103574,0.00010118385,0.0018486881],"genre_scores_gemma":[0.95736784,0.0003476619,0.039147437,0.000092982234,0.000022300226,0.000106571526,0.0017475386,0.0000128003385,0.0011549814],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994836,0.00012831588,0.000062188374,0.00015813347,0.00009451554,0.000073254916],"domain_scores_gemma":[0.9995041,0.00012374448,0.00015124577,0.000052552397,0.00007535116,0.00009306472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005755891,0.00050923513,0.00021029935,0.00061449653,0.00013727778,0.00047977877,0.00023129905,0.0003653881,0.00056728243],"category_scores_gemma":[0.0006581418,0.00026537396,0.00032282283,0.00033553,0.00033979965,0.00019723862,0.0004418205,0.0003036709,0.00037211375],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000102543345,0.00005215167,0.009576339,0.000053439704,0.000013468755,0.000084957675,0.0000498138,0.00010740712,0.9851413,0.00009198424,0.00003549022,0.004691091],"study_design_scores_gemma":[0.000053826745,0.001346261,0.08607858,0.00008453692,0.00012910628,0.002035225,0.00018684388,0.004659125,0.90091455,0.00034521418,0.00414212,0.000024609648],"about_ca_topic_score_codex":0.00034285322,"about_ca_topic_score_gemma":0.0004143653,"teacher_disagreement_score":0.00061449653,"about_ca_system_score_codex":0.00013742485,"about_ca_system_score_gemma":0.0002479427,"threshold_uncertainty_score":0.0030440092},"labels":[],"label_agreement":null},{"id":"W2569249039","doi":"10.1128/jcm.02162-16","title":"Sequence Type 631 Vibrio parahaemolyticus, an Emerging Foodborne Pathogen in North America","year":2017,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; U.S. Department of Agriculture; National Oceanic and Atmospheric Administration; National Institutes of Health; National Science Foundation","keywords":"Vibrio parahaemolyticus; Microbiology; Biology; Pathogen; Foodborne pathogen; Vibrionaceae; Type (biology); Virology; Bacteria; Ecology; Genetics; Listeria monocytogenes","score_opus":0.10197675977807762,"score_gpt":0.41857681598221297,"score_spread":0.31660005620413534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2569249039","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01532075,0.011609495,0.0007242698,0.87117904,0.035579674,0.0001087084,0.00018282692,0.00014845816,0.06514672],"genre_scores_gemma":[0.18294138,0.026444053,0.0018806886,0.6117637,0.11450298,0.0001545851,0.00039128738,0.00010432195,0.061817057],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.99959046,0.00008707547,0.00004017286,0.00008956476,0.00011145727,0.00008130363],"domain_scores_gemma":[0.9989693,0.00030997972,0.00011154471,0.000042490254,0.0002959379,0.00027068565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042772113,0.00045902008,0.00036362268,0.00030224695,0.0012007436,0.0008541274,0.0005767401,0.006694966,0.0069176746],"category_scores_gemma":[0.0026422585,0.00020402993,0.00022600945,0.00025118416,0.0010383496,0.0010906039,0.0004364517,0.0068894387,0.0052378997],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008622419,0.00014665257,0.010912193,0.00020745289,0.000012358873,0.06367607,0.0004496408,0.00012308842,0.0016405233,0.0031956683,0.8811042,0.03844593],"study_design_scores_gemma":[0.00012039845,0.00020090966,0.019925727,0.0019711037,0.00004913179,0.119552344,0.0019824468,0.0010997833,0.0009905015,0.009354817,0.84470665,0.000046236768],"about_ca_topic_score_codex":0.0041971887,"about_ca_topic_score_gemma":0.005919321,"teacher_disagreement_score":0.9958028,"about_ca_system_score_codex":0.0022416455,"about_ca_system_score_gemma":0.0017328119,"threshold_uncertainty_score":0.02314198},"labels":[],"label_agreement":null},{"id":"W2583454168","doi":"10.1128/jcm.00224-14","title":"<i>In Vitro</i> Activity of Amikacin against Isolates of Mycobacterium avium Complex with Proposed MIC Breakpoints and Finding of a 16S rRNA Gene Mutation in Treated Isolates","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"","keywords":"Amikacin; Microbiology; Biology; 16S ribosomal RNA; Breakpoint; In vitro; Ribosomal RNA; Virology; Gene; Antibiotics; Genetics","score_opus":0.03378491474013001,"score_gpt":0.3420899231208245,"score_spread":0.30830500838069447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2583454168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911958,0.0016376704,0.0019523011,0.00025530366,0.00016734301,0.000066646135,0.0014725188,0.00007033189,0.0031820254],"genre_scores_gemma":[0.9942796,0.000368432,0.0016570297,0.00009300551,0.000058039295,0.000032328506,0.0023228761,0.000010778262,0.0011778154],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995863,0.000105055755,0.00008263767,0.0000628365,0.00008417672,0.000078952224],"domain_scores_gemma":[0.99954283,0.00019782434,0.000053935728,0.000060928578,0.00010693737,0.00003754675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002645802,0.00026642554,0.00033173818,0.00036040516,0.00019148935,0.00030731325,0.00041338798,0.00046621411,0.0023613553],"category_scores_gemma":[0.0009454334,0.00015374378,0.00038458215,0.00032368297,0.0003186481,0.0001853975,0.00014032121,0.00045535472,0.00039547638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029680454,0.00027831964,0.005021895,0.00020596138,0.000048030543,0.00049187895,0.00009421599,0.0006550941,0.9852504,0.00017662383,0.0006332131,0.004176378],"study_design_scores_gemma":[0.000033145494,0.0021647892,0.016931461,0.000011530939,0.000039577717,0.0006797058,0.00008094655,0.00095050235,0.97755265,0.000051761886,0.0014910757,0.000012849678],"about_ca_topic_score_codex":0.002172644,"about_ca_topic_score_gemma":0.0012413994,"teacher_disagreement_score":0.0023613553,"about_ca_system_score_codex":0.00019587594,"about_ca_system_score_gemma":0.00017413375,"threshold_uncertainty_score":0.007899523},"labels":[],"label_agreement":null},{"id":"W2588318584","doi":"10.1128/jcm.01847-16","title":"High Prevalence and Diversity of Hepatitis Viruses in Suspected Cases of Yellow Fever in the Democratic Republic of Congo","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Universitaire de la Francophonie; Centre International de Recherches Médicales de Franceville; Agence Nationale de la Recherche; Institut National de la Santé et de la Recherche Médicale; Institut de Recherche pour le Développement","keywords":"Virology; Yellow fever; Diversity (politics); Flaviviridae; Democracy; Viral disease; Hepatitis; Medicine; Biology; Virus; Political science","score_opus":0.09356958443565283,"score_gpt":0.3820629327399967,"score_spread":0.28849334830434387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588318584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99942017,0.00017715641,0.000032421114,0.000033904013,0.0000024888054,0.0000049138544,0.00009193471,0.0000016520083,0.0002353407],"genre_scores_gemma":[0.9998343,0.000049637092,0.000024978646,0.000011881201,0.0000028620398,0.0000025958764,0.000047699254,4.3749094e-7,0.000025502588],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995957,0.0001543816,0.000060626968,0.00006385093,0.000047792088,0.000077617355],"domain_scores_gemma":[0.9992361,0.00015644271,0.0003730978,0.000037590788,0.00006349277,0.00013330205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039373038,0.00024057497,0.0001909462,0.0012695023,0.0005759213,0.00065207906,0.00020801772,0.00025485305,0.0011643409],"category_scores_gemma":[0.0018540634,0.00021247893,0.00015892599,0.000687267,0.00050030847,0.00048380665,0.00034579032,0.00023659646,0.00013266467],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019474786,0.000006032409,0.9986381,0.000005694635,0.0000073186143,0.00020374446,0.00018163695,0.000009667705,0.00040797968,0.000009321142,0.000046594378,0.00046443767],"study_design_scores_gemma":[0.000002762373,0.000022919527,0.9977138,0.000013034814,0.0000052410983,0.0009921846,0.00090597366,0.00008299941,0.00009077773,0.000011109064,0.00015657606,0.000002620243],"about_ca_topic_score_codex":0.00619673,"about_ca_topic_score_gemma":0.009352722,"teacher_disagreement_score":0.00619673,"about_ca_system_score_codex":0.0004101539,"about_ca_system_score_gemma":0.00018422566,"threshold_uncertainty_score":0.012321353},"labels":[],"label_agreement":null},{"id":"W2588401929","doi":"10.1128/jcm.01945-16","title":"The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Data-Driven Disease Surveillance","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Lethbridge","funders":"Division of Electrical, Communications and Cyber Systems","keywords":"Subtyping; Concordance; Epidemiology; Exposome; Computational biology; Data science; Biology; Bioinformatics; Medicine; Computer science; Genetics; Pathology; Programming language","score_opus":0.2607124774694666,"score_gpt":0.5163996312184498,"score_spread":0.2556871537489832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2588401929","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0069587925,0.00020577616,0.9843128,0.00019959865,0.000020124864,0.00015859985,0.0021592537,0.005657094,0.00032791274],"genre_scores_gemma":[0.095048256,0.00014409209,0.89911824,0.00012136457,0.00003653807,0.0004860609,0.0040905755,0.00072100933,0.00023389327],"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9765891,0.011070984,0.0028638304,0.0026111058,0.006326902,0.0005382405],"domain_scores_gemma":[0.927442,0.04935598,0.0068302434,0.007714396,0.0074338913,0.0012234161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.045662444,0.0016527019,0.0026201035,0.009865397,0.000957537,0.005463862,0.004044972,0.0012809322,0.0028794925],"category_scores_gemma":[0.13589178,0.0016843188,0.0039816196,0.0062182187,0.0019778446,0.004592139,0.0067674145,0.0024857314,0.00084647984],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012592294,0.00034931005,0.05165964,0.002144382,0.0019822856,0.0008470331,0.0019669852,0.45491442,0.005230946,0.16041954,0.0140433125,0.30518293],"study_design_scores_gemma":[0.00005749476,0.000109342436,0.0033717493,0.00010527852,0.00006833045,0.00018829311,0.00016013195,0.9217574,0.0023790621,0.06437067,0.0073528998,0.00007927136],"about_ca_topic_score_codex":0.009582479,"about_ca_topic_score_gemma":0.009805918,"teacher_disagreement_score":0.045662444,"about_ca_system_score_codex":0.0029035597,"about_ca_system_score_gemma":0.0051505947,"threshold_uncertainty_score":0.241489},"labels":[],"label_agreement":null},{"id":"W2589293839","doi":"10.1128/jcm.02290-16","title":"Correction for Vasireddy et al., Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, “Mycobacterium virginiense” sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis","year":2017,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saskatchewan Disease Control Laboratory","funders":"","keywords":"Mycobacterium; Microbiology; Mycobacterium abscessus; Mycobacterium chelonae; Tenosynovitis; Mycobacterium marinum; Mycobacterium avium complex; Mycobacterium Infections; Biology; Medicine; Bacteria; Genetics","score_opus":0.06083597272273599,"score_gpt":0.35083919710251504,"score_spread":0.29000322437977905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2589293839","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00013955195,0.0014714815,0.0006603042,0.032694,0.96185005,0.000037632366,0.0012330548,0.00029939413,0.001614378],"genre_scores_gemma":[0.015401087,0.015254003,0.010023195,0.11987442,0.6715623,0.00045329906,0.007091555,0.0022341996,0.15810591],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9954782,0.00067506125,0.0012226577,0.0006780544,0.001605649,0.000340464],"domain_scores_gemma":[0.9718902,0.0068720137,0.0018677772,0.0014729258,0.016723074,0.0011739695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036854518,0.0023477627,0.001801016,0.005393045,0.0028079841,0.003208849,0.0033269248,0.0043212706,0.059834383],"category_scores_gemma":[0.061876502,0.0013468618,0.0018410919,0.002426503,0.0020624236,0.002535338,0.0018480591,0.009321063,0.03237542],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027710077,0.0000066398097,0.00007103,0.00013181582,0.0000071075697,0.00016623225,0.000021591006,0.000018183599,0.000033715263,0.0003116935,0.99391794,0.005286436],"study_design_scores_gemma":[0.000051337724,0.000023280836,0.0010340414,0.00062277535,0.00003479377,0.0011921119,0.000109887806,0.00013283524,0.00021708354,0.00087901193,0.9956684,0.00003431964],"about_ca_topic_score_codex":0.016879316,"about_ca_topic_score_gemma":0.019244224,"teacher_disagreement_score":0.059834383,"about_ca_system_score_codex":0.0030013565,"about_ca_system_score_gemma":0.00476047,"threshold_uncertainty_score":0.20016599},"labels":[],"label_agreement":null},{"id":"W2589316631","doi":"10.1128/jcm.00100-17","title":"Neisseria gonorrhoeae Sequence Typing for Antimicrobial Resistance, a Novel Antimicrobial Resistance Multilocus Typing Scheme for Tracking Global Dissemination of N. gonorrhoeae Strains","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":194,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Ontario; University of Saskatchewan; Toronto Public Health; Public Health Agency of Canada","funders":"Centers for Disease Control and Prevention; Government of Canada","keywords":"Neisseria gonorrhoeae; Typing; Multilocus sequence typing; Biology; Microbiology; Antibiotic resistance; Antimicrobial; Gonorrhea; Neisseriaceae; Drug resistance; Virology; Genetics; Genotype; Gene; Antibiotics","score_opus":0.10200687754549684,"score_gpt":0.44266039224711984,"score_spread":0.340653514701623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2589316631","genre_codex":"dataset","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.32167146,0.003624496,0.22884849,0.0010661655,0.0004320028,0.005123413,0.39759466,0.02385136,0.01778801],"genre_scores_gemma":[0.2700916,0.0019514841,0.5139364,0.0005796223,0.00013340719,0.0016592931,0.2011323,0.0013284154,0.009187381],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979126,0.00025047496,0.00031681245,0.00048169517,0.0008980133,0.00014038866],"domain_scores_gemma":[0.99570835,0.00056683307,0.0012487567,0.00048660475,0.0015759282,0.00041354206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00309848,0.0006080632,0.00070666213,0.0038548508,0.0007104665,0.0015676507,0.0008343911,0.0004920404,0.003757287],"category_scores_gemma":[0.0074914005,0.00046745653,0.0006065172,0.002834834,0.00022407855,0.00085400254,0.0012495278,0.0005178247,0.0023077936],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017719191,0.00031970112,0.3603399,0.0020255966,0.0003756929,0.0006313876,0.002121286,0.0024492086,0.09229203,0.0022059905,0.08839594,0.44707134],"study_design_scores_gemma":[0.00037519986,0.0005637952,0.5842075,0.0012550859,0.00045354958,0.0017996184,0.0010102552,0.030375978,0.04886552,0.0020762242,0.32870024,0.0003169897],"about_ca_topic_score_codex":0.05164436,"about_ca_topic_score_gemma":0.08304615,"teacher_disagreement_score":0.05164436,"about_ca_system_score_codex":0.0012768449,"about_ca_system_score_gemma":0.00400311,"threshold_uncertainty_score":0.10268748},"labels":[],"label_agreement":null},{"id":"W2589589242","doi":"10.1128/jcm.02436-16","title":"Short-Read Whole-Genome Sequencing for Laboratory-Based Surveillance of Bordetella pertussis","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Public Health Ontario; University of Toronto","funders":"Public Health Ontario; University of Toronto","keywords":"Bordetella pertussis; Whole genome sequencing; Whooping cough; Biology; Microbiology; DNA sequencing; Genome; Bordetella; Computational biology; Virology; Genetics; Bacteria; Gene; Vaccination","score_opus":0.0717248143616861,"score_gpt":0.37567183988444436,"score_spread":0.30394702552275826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2589589242","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8353381,0.0016396962,0.12866405,0.0005567826,0.000171869,0.00036751086,0.026085481,0.0044761016,0.0027004555],"genre_scores_gemma":[0.75428677,0.00041976504,0.21251859,0.0003364028,0.000086589724,0.0003892695,0.030114453,0.0005540978,0.001294137],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99928516,0.00027849342,0.000054054715,0.00018171563,0.0001644682,0.00003603318],"domain_scores_gemma":[0.9986676,0.0004908586,0.00027062275,0.00017327454,0.0002807606,0.00011700975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012004382,0.0004735863,0.0004511947,0.0010423642,0.0003935889,0.0007819977,0.0004918916,0.0005930592,0.001626793],"category_scores_gemma":[0.0025777172,0.0002541896,0.0006494893,0.00079124,0.00016112368,0.0003427081,0.0003726409,0.0005037875,0.0009023959],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00081098825,0.00022964046,0.019948075,0.00038232422,0.00020019397,0.00015868667,0.00019123039,0.0031091054,0.9365061,0.00037595877,0.0026117999,0.035476085],"study_design_scores_gemma":[0.00024458652,0.0015407661,0.2957208,0.0001903261,0.00053748157,0.0010960044,0.00072405307,0.1738457,0.49801716,0.0028843419,0.025066985,0.00013184434],"about_ca_topic_score_codex":0.0015252227,"about_ca_topic_score_gemma":0.0034801767,"teacher_disagreement_score":0.001626793,"about_ca_system_score_codex":0.00033991048,"about_ca_system_score_gemma":0.0005857292,"threshold_uncertainty_score":0.00634861},"labels":[],"label_agreement":null},{"id":"W2593960886","doi":"10.1128/jcm.00017-17","title":"Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections","year":2017,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Campylobacter jejuni; Outbreak; Whole genome sequencing; Epidemiology; Campylobacter; Biology; Molecular epidemiology; Public health; Genome; Medicine; Virology; Genetics; Bacteria; Genotype; Gene","score_opus":0.39894680128906707,"score_gpt":0.4710829620879988,"score_spread":0.07213616079893176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2593960886","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010409452,0.9989188,0.00011426649,0.00028596487,0.00017065972,0.0000041950007,0.000031425112,0.0000051551733,0.0003654528],"genre_scores_gemma":[0.0007319618,0.99865794,0.00019049186,0.00014341064,0.00010094558,0.000003856782,0.00003991137,0.0000012962076,0.0001301132],"study_design_codex":"design_other","study_design_gemma":"systematic_review","domain_scores_codex":[0.99949336,0.0001265138,0.00009130585,0.000078060504,0.0001715155,0.000039252634],"domain_scores_gemma":[0.9981914,0.0010477838,0.00026013597,0.000039478153,0.000386104,0.00007503378],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015424708,0.00072650623,0.0012556722,0.004163792,0.00021286604,0.0011632484,0.0007172952,0.0014493163,0.0029809747],"category_scores_gemma":[0.0029590447,0.00026226958,0.0008477487,0.0034065247,0.00047212094,0.0011410683,0.0008153707,0.0011088721,0.0010251714],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006431257,0.00003668374,0.00091649377,0.04652575,0.00030044783,0.00023867321,0.000105558676,0.0003575932,0.001090388,0.0021994286,0.020260077,0.92790455],"study_design_scores_gemma":[0.000012805058,0.000095241776,0.0038462023,0.032317232,0.0005660835,0.0017841127,0.00019009275,0.0001534799,0.00064752175,0.001961996,0.95838773,0.000037378828],"about_ca_topic_score_codex":0.002014814,"about_ca_topic_score_gemma":0.0023819664,"teacher_disagreement_score":0.004163792,"about_ca_system_score_codex":0.00051871367,"about_ca_system_score_gemma":0.002247291,"threshold_uncertainty_score":0.009972334},"labels":[],"label_agreement":null},{"id":"W2597605420","doi":"10.1128/jcm.00162-17","title":"Robust Microbiota-Based Diagnostics for Inflammatory Bowel Disease","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Science Council; ZonMw","keywords":"Inflammatory bowel disease; Gut flora; Replicate; Crohn's disease; Microbiome; Disease; Medicine; Biology; Bioinformatics; Immunology; Statistics; Internal medicine; Mathematics","score_opus":0.059709027500626045,"score_gpt":0.37675031906124007,"score_spread":0.317041291560614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2597605420","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4663252,0.04497942,0.47451606,0.0021243526,0.00061249075,0.00048524834,0.0046594506,0.002784626,0.0035130614],"genre_scores_gemma":[0.85610294,0.0045705386,0.13526496,0.000446892,0.00023732714,0.00014919326,0.002490273,0.00009137995,0.00064655964],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963069,0.0014184188,0.00019893901,0.0005969568,0.0013076979,0.0001712141],"domain_scores_gemma":[0.9975758,0.00079598883,0.00070533215,0.0003315395,0.00047735558,0.00011396322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037045805,0.00092999043,0.0013918444,0.0017499736,0.00028260308,0.001572317,0.00065290206,0.00085290626,0.0006167719],"category_scores_gemma":[0.0070080385,0.00034944143,0.00071065576,0.0011031842,0.00049769285,0.00071009865,0.0010269544,0.0009257469,0.0006282326],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002952775,0.0006280912,0.10990188,0.0016121904,0.00096120045,0.0005628493,0.0002120171,0.105794914,0.40631655,0.0030565057,0.0055329385,0.3624681],"study_design_scores_gemma":[0.00012605396,0.0021838576,0.08450061,0.00035113105,0.0006161278,0.0011069732,0.00020098446,0.6742771,0.21141523,0.011676401,0.013327085,0.00021844782],"about_ca_topic_score_codex":0.0011068322,"about_ca_topic_score_gemma":0.0011387352,"teacher_disagreement_score":0.0037045805,"about_ca_system_score_codex":0.00064207544,"about_ca_system_score_gemma":0.0007968749,"threshold_uncertainty_score":0.019591928},"labels":[],"label_agreement":null},{"id":"W2599075710","doi":"10.1128/jcm.02524-16","title":"<i>In Vitro</i> Antifungal Susceptibility of Yeast and Mold Phases of Isolates of Dimorphic Fungal Pathogen Emergomycesafricanus (Formerly Emmonsia sp.) from HIV-Infected South African Patients","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Posaconazole; Etest; Anidulafungin; Caspofungin; Voriconazole; Itraconazole; Biology; Flucytosine; Microbiology; Candida parapsilosis; Amphotericin B; Fluconazole; Candida krusei; Candida albicans; Antimicrobial","score_opus":0.031659580225862696,"score_gpt":0.3266702245644298,"score_spread":0.2950106443385671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2599075710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99626726,0.000761028,0.00029253113,0.000088077024,0.00001957475,0.000052073843,0.0010752816,0.000010453796,0.0014337088],"genre_scores_gemma":[0.9974994,0.0002934247,0.00063681824,0.00008826698,0.00002207546,0.000026446703,0.0011425641,0.0000033801164,0.0002875847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99970657,0.000058853166,0.000059921287,0.00006743547,0.00005516608,0.000051985156],"domain_scores_gemma":[0.9996455,0.00013673282,0.00007391385,0.000024431009,0.00006998216,0.000049496506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002674512,0.00033694447,0.00026178392,0.00034276335,0.00022901161,0.00041494714,0.00014338682,0.00026434014,0.0012708367],"category_scores_gemma":[0.000912429,0.00011383719,0.00024693814,0.0003904488,0.00020311454,0.00016647695,0.00022942337,0.00035000022,0.00024251039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031862773,0.000593579,0.4497614,0.00049633475,0.00015140799,0.0069544367,0.0015119581,0.001285903,0.50292695,0.0003203611,0.0019943863,0.030817043],"study_design_scores_gemma":[0.00010957455,0.004421737,0.7423589,0.00010127312,0.00016331325,0.017067071,0.0011896695,0.0019337736,0.2236378,0.00015203159,0.008831924,0.00003290128],"about_ca_topic_score_codex":0.0014072848,"about_ca_topic_score_gemma":0.0012751016,"teacher_disagreement_score":0.0014072848,"about_ca_system_score_codex":0.00017791352,"about_ca_system_score_gemma":0.00011615946,"threshold_uncertainty_score":0.004251361},"labels":[],"label_agreement":null},{"id":"W2599214762","doi":"10.1128/jcm.00358-17","title":"Real-Time Sequencing of Mycobacterium tuberculosis: Are We There Yet?","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Minion; Mycobacterium tuberculosis; Nanopore sequencing; Chatterjee; DNA sequencing; Tuberculosis; Whole genome sequencing; Biology; Phylogenetic tree; Microbiology; Genetics; DNA; Computational biology; Genome; Medicine; Gene; Philosophy; Pathology","score_opus":0.10205654619550476,"score_gpt":0.4270801648227152,"score_spread":0.32502361862721046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2599214762","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024695266,0.04354069,0.008506515,0.8504736,0.092207246,0.000036420304,0.00037305633,0.00032065265,0.0020722772],"genre_scores_gemma":[0.041942764,0.061336022,0.020342566,0.73459953,0.13088426,0.00019007125,0.00078193634,0.00044722648,0.009475612],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9881782,0.004441609,0.0014148337,0.0017994206,0.0033463873,0.0008196613],"domain_scores_gemma":[0.9002076,0.059482608,0.005970935,0.0075486996,0.020694347,0.0060957745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02960034,0.0009562096,0.0014029512,0.00080379937,0.0018932682,0.0057306406,0.0032224276,0.01223203,0.0089274775],"category_scores_gemma":[0.077342406,0.00075935107,0.001401868,0.0010419542,0.0070359367,0.012811766,0.002607228,0.020877456,0.0064325687],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007787852,0.00012325456,0.005232088,0.0024229214,0.00024703637,0.0011408227,0.0011864688,0.00081694324,0.011444399,0.024959924,0.76868594,0.18296145],"study_design_scores_gemma":[0.00006640011,0.00030730985,0.0031565118,0.0015228468,0.00012618853,0.0010020306,0.0016230326,0.0013822636,0.0061012036,0.058524035,0.9259637,0.00022431977],"about_ca_topic_score_codex":0.002669914,"about_ca_topic_score_gemma":0.0033638203,"teacher_disagreement_score":0.02960034,"about_ca_system_score_codex":0.0018198313,"about_ca_system_score_gemma":0.0043849316,"threshold_uncertainty_score":0.15654343},"labels":[],"label_agreement":null},{"id":"W2601039645","doi":"10.1128/jcm.02498-16","title":"Evaluation of QuantiFERON-TB Gold-Plus in Health Care Workers in a Low-Incidence Setting","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; QuantiFERON; Confidence interval; Tuberculosis; Incidence (geometry); Cross-sectional study; Internal medicine; Gold standard (test); Latent tuberculosis; Immunology; Mycobacterium tuberculosis; Pathology","score_opus":0.17105910586687498,"score_gpt":0.5403105268490673,"score_spread":0.3692514209821923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2601039645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99824107,0.00041432734,0.0004808145,0.000109832894,0.000021343594,0.00008624352,0.000106498774,0.00001632313,0.0005236347],"genre_scores_gemma":[0.999081,0.00004127588,0.0006675613,0.000060440845,0.00000831759,0.000022781755,0.00006387924,0.0000013386873,0.000053308348],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9887344,0.0068938234,0.0007315546,0.00085016486,0.0022703896,0.0005196758],"domain_scores_gemma":[0.98965144,0.0039833663,0.0024673985,0.00029373026,0.002727067,0.0008769915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014227748,0.00060697173,0.00057807076,0.0007389203,0.0006374573,0.0011035821,0.0010253204,0.0008389294,0.0006288017],"category_scores_gemma":[0.022590043,0.00040964634,0.00029464628,0.0005047825,0.0006378338,0.0007165478,0.0007718524,0.0006777695,0.00020838955],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000474803,0.0002817898,0.99357843,0.000085796986,0.000039937113,0.000055139128,0.000296402,0.0001364182,0.00074804714,0.000021887132,0.00015153292,0.0041299267],"study_design_scores_gemma":[0.00010272578,0.0049805935,0.9852887,0.000091680675,0.00008337533,0.000303909,0.0014702866,0.0053773564,0.0017896466,0.00006181167,0.00042937775,0.000020517333],"about_ca_topic_score_codex":0.008630826,"about_ca_topic_score_gemma":0.011249179,"teacher_disagreement_score":0.014227748,"about_ca_system_score_codex":0.0011385656,"about_ca_system_score_gemma":0.0008666716,"threshold_uncertainty_score":0.07524443},"labels":[],"label_agreement":null},{"id":"W2602125518","doi":"10.1128/jcm.02153-16","title":"Evaluation of Altona Diagnostics RealStar Zika Virus Reverse Transcription-PCR Test Kit for Zika Virus PCR Testing","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Toronto; Public Health Ontario; Hospital for Sick Children","funders":"F. Hoffmann-La Roche; GlaxoSmithKline; Pfizer","keywords":"Medicine; Virology; Zika virus; Real-time polymerase chain reaction; Sanger sequencing; Polymerase chain reaction; Biology; Virus; Gene; DNA sequencing; Genetics","score_opus":0.18118744270926165,"score_gpt":0.44375849029183695,"score_spread":0.2625710475825753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2602125518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8646183,0.013171832,0.05363791,0.0017717031,0.00077868195,0.0034910257,0.006844785,0.002169188,0.05351664],"genre_scores_gemma":[0.9301937,0.0029107777,0.0529762,0.00079315895,0.00007444778,0.00071377197,0.0045888084,0.00020638347,0.0075426553],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9908118,0.0014043018,0.0006459659,0.0010199287,0.0055992315,0.0005188497],"domain_scores_gemma":[0.9951337,0.0009332269,0.0005054452,0.00016854495,0.0030236351,0.00023542132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0063916272,0.0008800845,0.0007014912,0.0016861631,0.00041095586,0.0012077378,0.0014657646,0.00066838536,0.003715783],"category_scores_gemma":[0.009233618,0.0004922802,0.00050520705,0.00089253223,0.0010025658,0.00042289612,0.00040138423,0.00051770307,0.0020776836],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031176093,0.0006789361,0.61351603,0.00206927,0.0002396141,0.0039886665,0.0029846705,0.0017402042,0.2339541,0.001417446,0.010837925,0.12545551],"study_design_scores_gemma":[0.00033434996,0.0066350685,0.5195856,0.0010732423,0.0007348047,0.01385074,0.0024892092,0.025570149,0.3343276,0.00060052105,0.094606556,0.00019213566],"about_ca_topic_score_codex":0.015825497,"about_ca_topic_score_gemma":0.024996353,"teacher_disagreement_score":0.015825497,"about_ca_system_score_codex":0.0012537607,"about_ca_system_score_gemma":0.0017864115,"threshold_uncertainty_score":0.03380257},"labels":[],"label_agreement":null},{"id":"W2602667098","doi":"10.1128/jcm.02316-16","title":"<i>In Vitro</i> Activity of Imipenem against Carbapenemase-Positive Enterobacteriaceae Isolates Collected by the SMART Global Surveillance Program from 2008 to 2014","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Merck","keywords":"Ertapenem; Imipenem; Microbiology; Klebsiella pneumoniae; Enterobacter cloacae; Biology; Enterobacteriaceae; Klebsiella oxytoca; Proteus mirabilis; Carbapenem; Escherichia coli; Meropenem; Antibiotic resistance; Antibiotics; Gene; Genetics","score_opus":0.0120771958677533,"score_gpt":0.3242248276064607,"score_spread":0.3121476317387074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2602667098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99130297,0.0007007602,0.00028933457,0.000058570815,0.000018069051,0.000044124503,0.0065121027,0.000021416417,0.0010526828],"genre_scores_gemma":[0.9859654,0.00035144106,0.0013352142,0.0000931908,0.000020347588,0.000044473025,0.011657064,0.000007179061,0.000525828],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99924135,0.00015302925,0.00013888485,0.00020480291,0.00017789123,0.000084049105],"domain_scores_gemma":[0.99940383,0.00010983422,0.00020122595,0.000044842283,0.00018894274,0.000051306768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045856682,0.0003805152,0.00032329743,0.0007789391,0.00011103971,0.00043843326,0.00023471248,0.00022614181,0.0011270735],"category_scores_gemma":[0.0009263349,0.00016600301,0.00044566023,0.0008326013,0.00014387358,0.0002573144,0.00025668074,0.00030669273,0.00028541943],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018714165,0.00045829266,0.5980677,0.00044314022,0.00040638878,0.00020775982,0.00020580064,0.0014831431,0.37508148,0.000053728203,0.0018445837,0.019876586],"study_design_scores_gemma":[0.000045771918,0.0025435355,0.73542154,0.00006929668,0.00023871254,0.0007549817,0.00032804778,0.0021250749,0.25563118,0.000029943185,0.002787437,0.000024485764],"about_ca_topic_score_codex":0.0032303038,"about_ca_topic_score_gemma":0.0037163957,"teacher_disagreement_score":0.0032303038,"about_ca_system_score_codex":0.00032182844,"about_ca_system_score_gemma":0.0002480089,"threshold_uncertainty_score":0.0064229965},"labels":[],"label_agreement":null},{"id":"W2604455965","doi":"10.1128/jcm.02488-16","title":"Novel Multiplex PCR Assay for Detection of Chlorhexidine-Quaternary Ammonium, Mupirocin, and Methicillin Resistance Genes, with Simultaneous Discrimination of Staphylococcus aureus from Coagulase-Negative Staphylococci","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"Agency for Healthcare Research and Quality; Alberta Health Services","keywords":"Mupirocin; Microbiology; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Coagulase; Staphylococcus; Antiseptic; Staphylococcal infections; Chlorhexidine; Biology; Antibiotic resistance; Multiplex polymerase chain reaction; Medicine; Antibiotics; Bacteria; Polymerase chain reaction; Gene","score_opus":0.05773191293180056,"score_gpt":0.36143024654879635,"score_spread":0.3036983336169958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604455965","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43605116,0.005829259,0.54561436,0.0006467757,0.0012424869,0.0016086054,0.0016477861,0.0032717066,0.00408785],"genre_scores_gemma":[0.53723645,0.0018703642,0.45082027,0.0006237173,0.0002475082,0.0011793226,0.0016925088,0.00007660474,0.0062531973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99657094,0.00063646724,0.00029570618,0.0011967281,0.0010780669,0.00022204427],"domain_scores_gemma":[0.99867237,0.00037001705,0.00028908838,0.00008561391,0.00043495273,0.00014804838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014221416,0.0020015733,0.0008517688,0.0017068784,0.00036652226,0.000726219,0.00096816313,0.0019077965,0.0010154581],"category_scores_gemma":[0.0016214495,0.0008111429,0.0006719685,0.00067843613,0.00052924233,0.0007279058,0.0006741732,0.0009738763,0.0008127263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011159262,0.00018162411,0.0018491134,0.0001541937,0.000028027946,0.00008986383,0.00007317438,0.00028653603,0.98591703,0.00018883956,0.00028105555,0.010839089],"study_design_scores_gemma":[0.00005785033,0.0011485197,0.0049917568,0.00006624147,0.000120792225,0.0012474364,0.000075564756,0.027013205,0.95859385,0.00025495372,0.006348059,0.00008180697],"about_ca_topic_score_codex":0.00037672732,"about_ca_topic_score_gemma":0.0007122501,"teacher_disagreement_score":0.0020015733,"about_ca_system_score_codex":0.0004954937,"about_ca_system_score_gemma":0.00051019544,"threshold_uncertainty_score":0.007521093},"labels":[],"label_agreement":null},{"id":"W2606308655","doi":"10.1128/jcm.00254-17","title":"Antifungal Susceptibility Testing of Aspergillus spp. by Using a Composite Correlation Index (CCI)-Based Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Method Appears To Not Offer Benefit over Traditional Broth Microdilution Testing","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Public Health Ontario; University Health Network","funders":"","keywords":"Voriconazole; Aspergillus fumigatus; Aspergillus; Microbiology; Broth microdilution; Matrix-assisted laser desorption/ionization; Biology; Mass spectrometry; Chromatography; Chemistry; Antifungal; Minimum inhibitory concentration; Desorption; Antibiotics","score_opus":0.08806901252621253,"score_gpt":0.3779008619589548,"score_spread":0.28983184943274226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606308655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9230946,0.005630762,0.06282012,0.0006309442,0.0003496598,0.0005185327,0.0020079024,0.00081837573,0.0041290815],"genre_scores_gemma":[0.9176371,0.0012656181,0.0778824,0.00023583378,0.000069579226,0.00014252761,0.0010615037,0.000043143107,0.0016623304],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965138,0.00095669454,0.00043903923,0.0005159041,0.0014626966,0.00011182285],"domain_scores_gemma":[0.99722785,0.0011361637,0.0005336785,0.00020237287,0.0007384357,0.00016143438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021169812,0.0008264226,0.0007206848,0.0010661382,0.00026094215,0.00079817,0.00044298105,0.00063564186,0.0012063651],"category_scores_gemma":[0.003061712,0.00020121297,0.00041079472,0.0008227281,0.00036826704,0.0004463273,0.00033990334,0.00061715534,0.0006443506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046263533,0.00038410406,0.03050146,0.00018446449,0.000060294413,0.00011615891,0.000050778315,0.00011351853,0.94800556,0.00009655091,0.0002598522,0.019764574],"study_design_scores_gemma":[0.000027599413,0.002296486,0.08190254,0.000037174297,0.00013224997,0.0017281282,0.00013033765,0.0052145678,0.90582395,0.00013897664,0.0025239785,0.00004390013],"about_ca_topic_score_codex":0.00065295433,"about_ca_topic_score_gemma":0.0015562923,"teacher_disagreement_score":0.0021169812,"about_ca_system_score_codex":0.00021555118,"about_ca_system_score_gemma":0.00034228578,"threshold_uncertainty_score":0.011195779},"labels":[],"label_agreement":null},{"id":"W2608308533","doi":"10.1128/jcm.02556-16","title":"Prevalence and Outcomes of Achromobacter Species Infections in Adults with Cystic Fibrosis: a North American Cohort Study","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University; Population Health Research Institute; University of Calgary","funders":"","keywords":"Achromobacter; Interquartile range; Cystic fibrosis; Odds ratio; Medicine; Internal medicine; Sputum; Confidence interval; Sputum culture; Retrospective cohort study; Cohort; Epidemiology; Biology; Pathology; Tuberculosis","score_opus":0.01098182045804738,"score_gpt":0.31357021762539516,"score_spread":0.3025883971673478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608308533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99851435,0.00021665332,0.000042391548,0.000050442657,0.0000058742426,0.00001591391,0.00078687846,0.0000023634298,0.00036517234],"genre_scores_gemma":[0.99917847,0.00013176355,0.00004745424,0.000040783852,0.0000062393933,0.000011492834,0.0004735056,0.0000013242882,0.0001090179],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994036,0.00009348962,0.00005239774,0.00016741184,0.0001429319,0.00014010812],"domain_scores_gemma":[0.9989849,0.00007198862,0.00031460315,0.00009195463,0.00024314775,0.00029338367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068391516,0.00034674862,0.0003660659,0.00071951584,0.0011002896,0.00080624764,0.000586145,0.00060730765,0.0014191524],"category_scores_gemma":[0.0011524662,0.00039622938,0.0005672859,0.0014063583,0.0003739906,0.00054052577,0.0005570023,0.0006766727,0.00021203796],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031750747,0.000018805344,0.9994368,0.000004067794,0.000029506742,0.00003423717,0.000062311614,0.000007929175,0.000074227,0.0000055184632,0.00008220083,0.00021258778],"study_design_scores_gemma":[0.0000030669812,0.000026217887,0.99952316,0.000004861825,0.000015551861,0.00007017361,0.00020992992,0.000055004573,0.000007892861,0.000004561346,0.000077312165,0.0000021889293],"about_ca_topic_score_codex":0.22246332,"about_ca_topic_score_gemma":0.25263843,"teacher_disagreement_score":0.22246332,"about_ca_system_score_codex":0.0011488748,"about_ca_system_score_gemma":0.0012380283,"threshold_uncertainty_score":0.44233686},"labels":[],"label_agreement":null},{"id":"W2608968597","doi":"10.1128/jcm.00043-17","title":"Evaluation of StrepB <i>Select</i> Chromogenic Medium and the Fast-Track Diagnostics Group B Streptococcus (GBS) Real-Time PCR Assay Compared to Routine Culture for Detection of GBS during Antepartum Screening","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Abbott Canada; Calgary Laboratory Services","keywords":"Group B; Streptococcus agalactiae; Streptococcus; Medicine; Chromogenic; Agar; Gold standard (test); Microbiology; Obstetrics; Biology; Internal medicine; Bacteria; Chromatography; Chemistry","score_opus":0.048067732378592874,"score_gpt":0.38149192199686377,"score_spread":0.3334241896182709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608968597","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876671,0.0017224451,0.008102924,0.00014647304,0.00009942065,0.00015975312,0.000586111,0.00019493632,0.0013208814],"genre_scores_gemma":[0.97766954,0.0005437306,0.019488532,0.00013128856,0.000034446977,0.00012766907,0.0009926057,0.000030492585,0.0009816869],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9927044,0.0021652682,0.00041083022,0.0010310129,0.0033418646,0.0003465797],"domain_scores_gemma":[0.9938427,0.003174295,0.00088888285,0.00025127784,0.0014979157,0.0003449536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006145546,0.0009212137,0.0006500612,0.0012933434,0.00028322265,0.0012020773,0.00083490566,0.00084717857,0.0009155898],"category_scores_gemma":[0.009416005,0.00051491486,0.00037170583,0.0008352689,0.0008403767,0.0004368811,0.0004710322,0.0005364147,0.00042507317],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0055740643,0.00083770475,0.3661593,0.0008234532,0.00022856474,0.0003016256,0.0010641266,0.0012574891,0.5806432,0.00017620684,0.0006282336,0.042306002],"study_design_scores_gemma":[0.0001907354,0.011333221,0.52343214,0.00016604648,0.000435553,0.0021032633,0.0009138956,0.022318052,0.43606564,0.00008825645,0.0028393527,0.00011382154],"about_ca_topic_score_codex":0.009440801,"about_ca_topic_score_gemma":0.01908997,"teacher_disagreement_score":0.009440801,"about_ca_system_score_codex":0.0009317669,"about_ca_system_score_gemma":0.00087961665,"threshold_uncertainty_score":0.03250116},"labels":[],"label_agreement":null},{"id":"W2617993157","doi":"10.1128/jcm.00307-17","title":"Multicenter Clinical Evaluation of BacT/Alert Virtuo Blood Culture System","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Sepsis Diagnosis and Treatment","field":"Medicine","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Mount Sinai Hospital","funders":"","keywords":"Blood culture; Multicenter study; Medicine; Microbiology; Clinical microbiology; Intensive care medicine; Biology; Internal medicine; Antibiotics","score_opus":0.2916233308137627,"score_gpt":0.5256007389383057,"score_spread":0.23397740812454304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2617993157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98749465,0.0032111104,0.0024782591,0.00021655385,0.0001102605,0.0023831571,0.0014999097,0.00010728754,0.002498765],"genre_scores_gemma":[0.99074674,0.00075055734,0.0038251253,0.00037913406,0.00008679139,0.0011702824,0.0023069943,0.000024361929,0.0007100941],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99214303,0.004919189,0.0005231684,0.000896208,0.0012781417,0.0002402478],"domain_scores_gemma":[0.9927067,0.0013412561,0.0014908551,0.00044186797,0.0030689565,0.00095045194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008742966,0.0007137872,0.0010726888,0.00045411917,0.0004612153,0.0009437766,0.0006525239,0.0006257933,0.0013083832],"category_scores_gemma":[0.010213574,0.00023318187,0.0005603611,0.00067952846,0.00038963673,0.0005119216,0.00052329665,0.0005817522,0.00042380756],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.33134794,0.014807601,0.44920814,0.0013833818,0.0018343792,0.00047098222,0.00092877186,0.0023721457,0.05167971,0.0004698678,0.007798867,0.1376983],"study_design_scores_gemma":[0.017733643,0.42797497,0.52186817,0.0001612203,0.0010107424,0.0010343987,0.00034883048,0.0057870355,0.0141833,0.00011864535,0.009665848,0.00011309089],"about_ca_topic_score_codex":0.0006160793,"about_ca_topic_score_gemma":0.00057000783,"teacher_disagreement_score":0.008742966,"about_ca_system_score_codex":0.0006112986,"about_ca_system_score_gemma":0.0009463433,"threshold_uncertainty_score":0.046237826},"labels":[],"label_agreement":null},{"id":"W2618039469","doi":"10.1128/jcm.00318-17","title":"Multicenter Clinical Evaluation of the Luminex Aries Flu A/B &amp; RSV Assay for Pediatric and Adult Respiratory Tract Specimens","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Medicine; Virology; Respiratory tract; Respiratory system; Multicenter study; Respiratory tract infections; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Internal medicine; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.2791447454792162,"score_gpt":0.5392636978272871,"score_spread":0.2601189523480709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2618039469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99081403,0.00094893744,0.0033992885,0.00009127831,0.000041421605,0.0012364374,0.0015612453,0.00018641294,0.0017208826],"genre_scores_gemma":[0.99027306,0.00022215811,0.005006816,0.00018678582,0.00003686937,0.0006544795,0.003156856,0.000026972717,0.0004360098],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99202746,0.0034384364,0.0006373559,0.0015698179,0.0020227158,0.00030433893],"domain_scores_gemma":[0.994159,0.0008817634,0.0013265555,0.0005311143,0.0024225956,0.00067901175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0122292945,0.0010445307,0.0007563453,0.0007358014,0.00066621706,0.0009035806,0.0009055345,0.00073609385,0.0007480116],"category_scores_gemma":[0.008117464,0.000553147,0.00043505582,0.0007085645,0.00064979726,0.0005001542,0.00055402424,0.00074597856,0.00068751234],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011228774,0.0034666576,0.91492283,0.00021865894,0.0002606044,0.00060410064,0.0008211875,0.0012370814,0.038140725,0.00017317434,0.0018091999,0.027117029],"study_design_scores_gemma":[0.0009498197,0.03216151,0.9432412,0.000039479903,0.00015284782,0.0019267182,0.00021585276,0.003314912,0.014004499,0.000033013443,0.0039215465,0.0000385741],"about_ca_topic_score_codex":0.0022335388,"about_ca_topic_score_gemma":0.0015580226,"teacher_disagreement_score":0.0122292945,"about_ca_system_score_codex":0.000836127,"about_ca_system_score_gemma":0.0011421388,"threshold_uncertainty_score":0.06467545},"labels":[],"label_agreement":null},{"id":"W2619696637","doi":"10.1128/jcm.00487-17","title":"Correction for Cairns et al., “Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages”","year":2017,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Medical Research Council","keywords":"Clostridium difficile; Biology; Phylogenetics; Toxin; Microbiology; Genome; Computational biology; Genetics; Gene; Antibiotics","score_opus":0.06420461669137909,"score_gpt":0.4129237944369452,"score_spread":0.34871917774556616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619696637","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012358725,0.00056191615,0.0005378527,0.03410271,0.9626795,0.000019714307,0.0007705512,0.0002690152,0.0009352131],"genre_scores_gemma":[0.019827073,0.008900662,0.0093699545,0.13077727,0.63072675,0.00035425797,0.006116384,0.0034827502,0.19044481],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99268144,0.0012297905,0.0014796361,0.0010828987,0.002971883,0.00055420725],"domain_scores_gemma":[0.93645036,0.013202444,0.0031221288,0.003082674,0.041834053,0.002308291],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006021986,0.0020265693,0.002030641,0.0038038872,0.003473824,0.0036452648,0.003648489,0.0049615013,0.050303906],"category_scores_gemma":[0.10152105,0.001344779,0.0018735344,0.0023724388,0.0027162975,0.002186683,0.002319687,0.011120729,0.030477218],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025619056,0.000003439295,0.000051437008,0.000087332155,0.000008558147,0.00017609642,0.000022787537,0.00001976484,0.000047929203,0.0002850509,0.9961888,0.0030832214],"study_design_scores_gemma":[0.00005847878,0.00002116247,0.0008383205,0.0003716117,0.000041150848,0.0009232225,0.0001095594,0.00017235323,0.00046053616,0.0010923713,0.99586177,0.000049326653],"about_ca_topic_score_codex":0.015003355,"about_ca_topic_score_gemma":0.017732445,"teacher_disagreement_score":0.050303906,"about_ca_system_score_codex":0.0035349138,"about_ca_system_score_gemma":0.006673352,"threshold_uncertainty_score":0.16828334},"labels":[],"label_agreement":null},{"id":"W2619889792","doi":"10.1128/jcm.00442-17","title":"Evaluation of Euroimmun Anti-Zika Virus IgM and IgG Enzyme-Linked Immunosorbent Assays for Zika Virus Serologic Testing","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; University of Toronto; Public Health Ontario; Hospital for Sick Children","funders":"F. Hoffmann-La Roche","keywords":"Medicine; Serology; Plaque reduction neutralization test; Cohort; Immunoglobulin M; Virology; Antibody; Internal medicine; Immunology; Immunoglobulin G","score_opus":0.19202895657215405,"score_gpt":0.44575707982139545,"score_spread":0.25372812324924143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2619889792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9822433,0.0058529964,0.004420528,0.00011221463,0.00010604316,0.00035347955,0.0004748359,0.00008834882,0.0063482225],"genre_scores_gemma":[0.9942175,0.00062210567,0.0042212545,0.00009041442,0.00003646985,0.00006333978,0.00041705143,0.00000853714,0.00032330395],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9937691,0.0018334799,0.0005866461,0.0006540218,0.0027960418,0.0003606327],"domain_scores_gemma":[0.99428505,0.0015611446,0.0013069927,0.0002620254,0.0022599818,0.0003247821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009571157,0.00095469935,0.00044915595,0.0019562123,0.0002741343,0.00079923274,0.0010763628,0.00048125713,0.0010078719],"category_scores_gemma":[0.011521985,0.00034598485,0.00041455237,0.00092901266,0.0006850949,0.00065587915,0.00039570135,0.00039563855,0.00029459628],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011220074,0.00032850835,0.9592419,0.00029676035,0.00015383601,0.0005260863,0.00028998515,0.00035623045,0.019180985,0.00016823981,0.00039761775,0.01793782],"study_design_scores_gemma":[0.00008053778,0.002270373,0.96786666,0.000101182464,0.00018627988,0.0026946156,0.00031113176,0.0036460494,0.019492168,0.000064626714,0.0032625818,0.000023789675],"about_ca_topic_score_codex":0.00454672,"about_ca_topic_score_gemma":0.0060446966,"teacher_disagreement_score":0.009571157,"about_ca_system_score_codex":0.00083196495,"about_ca_system_score_gemma":0.0007009252,"threshold_uncertainty_score":0.050617695},"labels":[],"label_agreement":null},{"id":"W2626060000","doi":"10.1128/jcm.00300-17","title":"Identification of Group B Streptococcus Capsule Type by Use of a Dual Phenotypic/Genotypic Assay","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Typing; Sialic acid; Biology; Genotype; Microbiology; Serotype; Streptococcus; Virulence; Molecular biology; Gene; Genetics; Bacteria","score_opus":0.07131074375541181,"score_gpt":0.3909875405079289,"score_spread":0.3196767967525171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2626060000","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9260644,0.00059708947,0.063486345,0.00018090832,0.00013425348,0.00032117005,0.0017448162,0.0003576936,0.0071133426],"genre_scores_gemma":[0.91387933,0.00040822706,0.079940856,0.00011056389,0.000030457366,0.0002868829,0.0015419859,0.00003550132,0.003766108],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984493,0.00047362872,0.00013314438,0.00031330602,0.00051311933,0.00011746163],"domain_scores_gemma":[0.9990834,0.00020329503,0.00022571787,0.00009423438,0.0002901339,0.000103236474],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053509534,0.00054780446,0.00029918217,0.0011441965,0.000188901,0.0006092881,0.0003315333,0.00057911803,0.0012643593],"category_scores_gemma":[0.0013389871,0.00020956295,0.00029771993,0.00053913164,0.0003234599,0.00024091077,0.0005778229,0.00046918262,0.000911148],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014726778,0.00009585657,0.008642149,0.00006721173,0.000014408581,0.000050315164,0.000052978492,0.00006412917,0.9851468,0.000094895615,0.00007549981,0.005548394],"study_design_scores_gemma":[0.000019310746,0.0011253032,0.05464886,0.000039592785,0.00011453711,0.0010925899,0.00024819112,0.0049946145,0.9349604,0.00016095059,0.0025547037,0.00004085115],"about_ca_topic_score_codex":0.0006602974,"about_ca_topic_score_gemma":0.0007658405,"teacher_disagreement_score":0.0012643593,"about_ca_system_score_codex":0.0001542467,"about_ca_system_score_gemma":0.00019287672,"threshold_uncertainty_score":0.0042297244},"labels":[],"label_agreement":null},{"id":"W2738217993","doi":"10.1128/jcm.00920-17","title":"Cross-Reacting Ustilago maydis Causing False-Positive Cryptococcal Antigen Test Results","year":2017,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Cryptococcus neoformans; Latex fixation test; Basidiomycota; Biology; Agglutination (biology); Antigen; Cryptococcus; Microbiology; Cryptococcosis; Fungi imperfecti; Ustilago; Direct agglutination test; Immunology; Serology; Antibody; Botany","score_opus":0.09624587951968472,"score_gpt":0.4402783380944471,"score_spread":0.3440324585747624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2738217993","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3444456,0.013213207,0.008272143,0.49026215,0.020190619,0.00042859628,0.00059681473,0.00090234546,0.121688575],"genre_scores_gemma":[0.8446084,0.0043374766,0.0028285102,0.11366438,0.015807431,0.000091894944,0.00019953544,0.00010061078,0.01836171],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9992367,0.00023418335,0.000080992904,0.00011295568,0.0001541395,0.00018099496],"domain_scores_gemma":[0.9981127,0.0009369109,0.00019457295,0.00014086682,0.0003189455,0.00029605292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005023322,0.00086983974,0.0007082627,0.000614887,0.0011015586,0.000788483,0.00076068076,0.0068978975,0.0041935095],"category_scores_gemma":[0.0060791755,0.0003407443,0.0006298723,0.00046137162,0.00105288,0.0011521599,0.000459161,0.0055321553,0.002436911],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001764707,0.00014243521,0.006769422,0.00010376691,0.000017463686,0.94944686,0.00036621874,0.00016633967,0.0016521387,0.0020306397,0.028759906,0.010368347],"study_design_scores_gemma":[0.00011259866,0.00022071306,0.005247885,0.00018474023,0.000043526266,0.9477899,0.00046938774,0.0020326662,0.00202555,0.0031337582,0.038707953,0.000031321742],"about_ca_topic_score_codex":0.001766649,"about_ca_topic_score_gemma":0.0014469196,"teacher_disagreement_score":0.0068978975,"about_ca_system_score_codex":0.0014909705,"about_ca_system_score_gemma":0.00050977856,"threshold_uncertainty_score":0.014028728},"labels":[],"label_agreement":null},{"id":"W2738548739","doi":"10.1128/jcm.00972-17","title":"Determination of Disk Diffusion and MIC Quality Control Ranges for Nafithromycin (WCK 4873), a New Lactone-Ketolide","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Ketolide; Antibacterial agent; Biology; Microbiology; Antibiotics","score_opus":0.11653956652249886,"score_gpt":0.49137288940152174,"score_spread":0.3748333228790229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2738548739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.63246256,0.009253652,0.26312166,0.0016569956,0.0010163991,0.026990457,0.029117033,0.0031918916,0.033189315],"genre_scores_gemma":[0.6124207,0.004385921,0.31777406,0.0015367698,0.0002125777,0.014389079,0.036395974,0.0006261481,0.01225876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9605951,0.011755875,0.0061765322,0.0027460314,0.01798299,0.00074354175],"domain_scores_gemma":[0.97047937,0.0037772448,0.004124678,0.0027375892,0.018248683,0.0006324144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.019857872,0.0013297492,0.0012730561,0.0032784457,0.0011720976,0.0024690046,0.002105019,0.001566797,0.0029667756],"category_scores_gemma":[0.028386995,0.000738342,0.0012335988,0.002596475,0.0014081675,0.0007525976,0.00090318563,0.0010223483,0.0018706804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031839935,0.0013058612,0.029033104,0.00090998295,0.0001600392,0.0002332922,0.001213749,0.0012338003,0.90860516,0.0012955556,0.0055982154,0.04722715],"study_design_scores_gemma":[0.0003235343,0.008066212,0.06131441,0.0005171363,0.0003357537,0.0010068696,0.0006144417,0.0052958336,0.8807938,0.00029036033,0.041260727,0.00018095165],"about_ca_topic_score_codex":0.0072216243,"about_ca_topic_score_gemma":0.009590724,"teacher_disagreement_score":0.019857872,"about_ca_system_score_codex":0.0013167446,"about_ca_system_score_gemma":0.0034718157,"threshold_uncertainty_score":0.10501969},"labels":[],"label_agreement":null},{"id":"W2740736991","doi":"10.1128/jcm.00806-17","title":"Detection of Plasmodium Infection by the illumigene Malaria Assay Compared to Reference Microscopy and Real-Time PCR","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Malaria Research and Control","field":"Medicine","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Malaria; Loop-mediated isothermal amplification; Giemsa stain; Blood smear; Medicine; Diagnosis of malaria; Virology; Confidence interval; Biology; Immunology; Internal medicine; Pathology; Plasmodium falciparum","score_opus":0.051200905271568266,"score_gpt":0.39033959160812226,"score_spread":0.339138686336554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2740736991","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920311,0.0025410731,0.0042140367,0.00008151839,0.00004705431,0.00006586499,0.00015946192,0.000044720902,0.0008151955],"genre_scores_gemma":[0.99566615,0.00015991488,0.0038521097,0.00003683504,0.000014769137,0.0000331083,0.0000912384,0.0000045618285,0.0001413163],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99196565,0.005155949,0.0004683285,0.0008072944,0.001386437,0.00021649436],"domain_scores_gemma":[0.99446714,0.0033802185,0.0010261663,0.00026453644,0.00071597454,0.00014604132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005188206,0.00049563916,0.00039876942,0.00087562116,0.00015974915,0.0007530829,0.00047846895,0.00052440236,0.00094256573],"category_scores_gemma":[0.011926821,0.0002712423,0.0003840531,0.00040232966,0.00041624522,0.00047362605,0.00038710173,0.00047506523,0.0002182662],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011516418,0.0007571518,0.8684938,0.0005496387,0.0005921711,0.00027699923,0.00033281397,0.001378553,0.04524071,0.00029345113,0.00085645344,0.06971184],"study_design_scores_gemma":[0.00035929948,0.017997587,0.9001423,0.00010340435,0.00063643244,0.004198708,0.00040138504,0.026280759,0.047552355,0.00027002525,0.0019753482,0.00008231528],"about_ca_topic_score_codex":0.00093145133,"about_ca_topic_score_gemma":0.0008725309,"teacher_disagreement_score":0.005188206,"about_ca_system_score_codex":0.0004892703,"about_ca_system_score_gemma":0.00025464076,"threshold_uncertainty_score":0.027438223},"labels":[],"label_agreement":null},{"id":"W2748020984","doi":"10.1128/jcm.00958-17","title":"Correction for Eck et al., “Robust Microbiota-Based Diagnostics for Inflammatory Bowel Disease”","year":2017,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Inflammatory bowel disease; Inflammatory Bowel Diseases; Medicine; Disease; Gastroenterology; Microbiology; Biology; Internal medicine","score_opus":0.029297718317841205,"score_gpt":0.3472376087669177,"score_spread":0.3179398904490765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748020984","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008329104,0.0013662115,0.0008288388,0.030830491,0.96342546,0.00002921424,0.0014549611,0.00035257795,0.0016289805],"genre_scores_gemma":[0.01027683,0.016138365,0.011451361,0.119015746,0.6529823,0.00049940107,0.009450573,0.0033525948,0.17683287],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9930207,0.0012834761,0.0014185245,0.0009586709,0.0028198787,0.0004988193],"domain_scores_gemma":[0.9574622,0.010497318,0.0022350035,0.0023251001,0.025895527,0.0015848608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005862528,0.002710469,0.0016360943,0.0053410064,0.0027115946,0.00457662,0.00347461,0.0049512265,0.08789204],"category_scores_gemma":[0.079325415,0.0012363502,0.0023866622,0.0026933623,0.0022684939,0.0024226753,0.0024708114,0.010631144,0.04892282],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028780778,0.0000048658894,0.00005746609,0.000149379,0.000008891313,0.00007546777,0.00001394668,0.000024063806,0.000038139864,0.00038043855,0.9937238,0.0054947184],"study_design_scores_gemma":[0.000040399675,0.00001732401,0.00063904835,0.00057873444,0.000030394347,0.0005607085,0.000054064134,0.00013768248,0.00025444143,0.0011269245,0.9965307,0.000029659133],"about_ca_topic_score_codex":0.010894129,"about_ca_topic_score_gemma":0.013588374,"teacher_disagreement_score":0.08789204,"about_ca_system_score_codex":0.003408424,"about_ca_system_score_gemma":0.0052565145,"threshold_uncertainty_score":0.29402816},"labels":[],"label_agreement":null},{"id":"W2750155993","doi":"10.1128/jcm.00855-17","title":"Multiplex Real-Time PCR Assay for Simultaneous Identification of Neisseria gonorrhoeae and Its Ciprofloxacin Susceptibility Status","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Government of Saskatchewan; Public Health Agency of Canada; Saskatchewan Disease Control Laboratory; University of Saskatchewan","funders":"Grand Challenges Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Neisseria gonorrhoeae; Ciprofloxacin; Microbiology; Biology; Multiplex polymerase chain reaction; Multiplex; Primer (cosmetics); Polymerase chain reaction; Virology; Antibiotics; Genetics; Chemistry; Gene","score_opus":0.06565206100729926,"score_gpt":0.4205311778033902,"score_spread":0.35487911679609097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2750155993","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5122639,0.005149006,0.46684718,0.0003843144,0.0010774299,0.0023617386,0.004158375,0.003055966,0.0047020703],"genre_scores_gemma":[0.45358583,0.0015552137,0.5329314,0.00036802693,0.00024526787,0.002852505,0.0026666203,0.00010658793,0.0056886273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964359,0.0009787498,0.00033174857,0.0010785733,0.0009379739,0.00023709724],"domain_scores_gemma":[0.9976095,0.000903929,0.0005147044,0.0002323146,0.00060595927,0.00013361906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027413305,0.0012013722,0.0011693542,0.0017332672,0.0003368253,0.00091070356,0.00077514467,0.0011282379,0.002419774],"category_scores_gemma":[0.0033591734,0.00083604804,0.0006684471,0.000795457,0.00053223514,0.00080436334,0.00047254062,0.0011506721,0.00086623646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061315624,0.00036445682,0.0064402362,0.00021817852,0.000047402486,0.00016307828,0.00018276167,0.00045457977,0.9724821,0.00032484424,0.00040892485,0.018300306],"study_design_scores_gemma":[0.00013829865,0.0029878078,0.018365696,0.00013826648,0.00021152338,0.0015585383,0.00023681972,0.02823505,0.9362452,0.00049874454,0.0112550855,0.0001290544],"about_ca_topic_score_codex":0.00024958016,"about_ca_topic_score_gemma":0.00054410513,"teacher_disagreement_score":0.0027413305,"about_ca_system_score_codex":0.0004749683,"about_ca_system_score_gemma":0.0003990651,"threshold_uncertainty_score":0.014497757},"labels":[],"label_agreement":null},{"id":"W2753835675","doi":"10.1128/jcm.00911-17","title":"Multisite Evaluation of the BD Max Extended Enteric Bacterial Panel for Detection of Yersinia enterocolitica, Enterotoxigenic Escherichia coli, Vibrio, and Plesiomonas shigelloides from Stool Specimens","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); University of Calgary","funders":"","keywords":"Plesiomonas shigelloides; Yersinia enterocolitica; Microbiology; Vibrionaceae; Enterotoxigenic Escherichia coli; Aeromonas; Medicine; Biology; Escherichia coli; Enterotoxin; Bacteria","score_opus":0.07839641489086292,"score_gpt":0.38871320493463085,"score_spread":0.31031679004376794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2753835675","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99325234,0.0003677582,0.005487363,0.000021235875,0.00001593363,0.000051654657,0.00020970355,0.0000484556,0.0005454641],"genre_scores_gemma":[0.9896102,0.000089186826,0.009676967,0.000028101054,0.000008023707,0.00003551608,0.00036060074,0.000009023241,0.00018240411],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9932286,0.0028986363,0.000571931,0.0011686991,0.0019677181,0.00016445477],"domain_scores_gemma":[0.9938955,0.0021118724,0.0010299823,0.0006434913,0.0020344409,0.0002847149],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0063613937,0.00047256492,0.00053811615,0.0010071074,0.00024837095,0.0005884349,0.00032841766,0.0004340103,0.0006998265],"category_scores_gemma":[0.0066792085,0.0003799508,0.00035571167,0.00060144684,0.00028308688,0.0005083641,0.0009095616,0.0003538514,0.0003072204],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026022862,0.00029931727,0.78253204,0.0002013354,0.0002416762,0.00016536494,0.00048176333,0.000586738,0.18718794,0.00005002518,0.00021762676,0.025433902],"study_design_scores_gemma":[0.000089221605,0.006644278,0.87569296,0.00007171543,0.00027767793,0.0031408898,0.0005369827,0.0078906175,0.10392948,0.000040031162,0.0016405585,0.000045538527],"about_ca_topic_score_codex":0.00050755555,"about_ca_topic_score_gemma":0.0012513739,"teacher_disagreement_score":0.0063613937,"about_ca_system_score_codex":0.00020099114,"about_ca_system_score_gemma":0.00020196666,"threshold_uncertainty_score":0.03364265},"labels":[],"label_agreement":null},{"id":"W2763100814","doi":"10.1128/jcm.01354-17","title":"Evaluation of the β-Lacta Test for Detection of Extended-Spectrum-β-Lactamase (ESBL)-Producing Organisms Directly from Positive Blood Cultures by Use of Smudge Plates","year":2017,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Bacteremia; Enterobacteriaceae; Microbiology; Enterobacteriaceae Infections; Blood culture; Medicine; Biology; Antibiotics; Escherichia coli; Gene","score_opus":0.035751250966121154,"score_gpt":0.33638354856092834,"score_spread":0.3006322975948072,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2763100814","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20158668,0.017810494,0.015161183,0.5487141,0.03026574,0.0005688209,0.0006709076,0.000624534,0.18459754],"genre_scores_gemma":[0.80160064,0.009560783,0.008778009,0.11646482,0.025826601,0.00023265305,0.00043467886,0.000118609954,0.03698323],"study_design_codex":"case_report","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993482,0.00022992666,0.000078482226,0.000108975815,0.00012907143,0.0001052936],"domain_scores_gemma":[0.99863213,0.00073429453,0.000114189366,0.000095830444,0.0002758642,0.0001477017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004231514,0.0006189387,0.00042043012,0.00064246135,0.00050747715,0.0008694081,0.0007628797,0.005369079,0.00571753],"category_scores_gemma":[0.0040619313,0.00022157584,0.00033931862,0.00029107908,0.0009888065,0.0008410372,0.0002763852,0.0042285305,0.0044124965],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008473529,0.00056660664,0.029054767,0.0005473899,0.00004035411,0.656573,0.0006903083,0.0003707672,0.028846433,0.009179763,0.20558244,0.06770084],"study_design_scores_gemma":[0.000103338265,0.0010279678,0.014250509,0.00055449444,0.000047862006,0.76006585,0.0009155819,0.0030169932,0.017901797,0.009051696,0.19298539,0.00007855348],"about_ca_topic_score_codex":0.0005473882,"about_ca_topic_score_gemma":0.00059345836,"teacher_disagreement_score":0.00571753,"about_ca_system_score_codex":0.0008353243,"about_ca_system_score_gemma":0.00036348196,"threshold_uncertainty_score":0.019127011},"labels":[],"label_agreement":null},{"id":"W2765514197","doi":"10.1128/jcm.01234-17","title":"Evaluation of a Modified Carbapenem Inactivation Method for Detection of Carbapenemases in Pseudomonas aeruginosa","year":2017,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; Provincial Laboratory of Public Health; Alberta Health Services; University of Alberta","funders":"","keywords":"Pseudomonas aeruginosa; Microbiology; Carbapenem; Pseudomonadaceae; Pseudomonadales; Biology; Bacteria; Antibiotics; Genetics","score_opus":0.08458640267337574,"score_gpt":0.42022367490786666,"score_spread":0.3356372722344909,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765514197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9304651,0.0069400766,0.024313092,0.026335726,0.003741119,0.00046389227,0.00032121481,0.00037494162,0.007044894],"genre_scores_gemma":[0.9621472,0.0017785154,0.021508964,0.007927058,0.0012033337,0.00016457388,0.0003181473,0.0000741077,0.004878147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980494,0.00053907273,0.00017940623,0.00020262208,0.0008763723,0.00015312945],"domain_scores_gemma":[0.9977289,0.001121476,0.00016537284,0.00015161952,0.0007381918,0.00009459593],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011429307,0.00056517095,0.00059652206,0.00041442772,0.00034515088,0.000715183,0.0009050451,0.0025905643,0.00071553176],"category_scores_gemma":[0.00336971,0.00025751,0.0005422413,0.0002335893,0.0006665425,0.00053346425,0.00040253988,0.0017670476,0.0008359007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021557026,0.0011098543,0.027572328,0.0007066831,0.00010864687,0.020601286,0.000981625,0.00027949922,0.8683557,0.00049580116,0.006915694,0.070717126],"study_design_scores_gemma":[0.00015936996,0.005987969,0.029091151,0.0000846698,0.00031905939,0.050795216,0.0008059784,0.0049732965,0.8679923,0.00070879975,0.03898085,0.00010134809],"about_ca_topic_score_codex":0.00071139133,"about_ca_topic_score_gemma":0.0010030231,"teacher_disagreement_score":0.0025905643,"about_ca_system_score_codex":0.0005107543,"about_ca_system_score_gemma":0.00028759317,"threshold_uncertainty_score":0.006044507},"labels":[],"label_agreement":null},{"id":"W2773151689","doi":"10.1128/jcm.01384-17","title":"Zoonotic Transfer of Clostridium difficile Harboring Antimicrobial Resistance between Farm Animals and Humans","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Medical Research Council; National Health and Medical Research Council; State Government of Victoria; ZonMw; National Institute for Health and Care Research; Wellcome Trust","keywords":"Clostridium difficile; Microbiology; Clostridium Infections; Antibiotic resistance; Biology; C difficile; Antimicrobial; Clostridiaceae; Clostridium; Clostridiales; Bacteria; Virology; Antibiotics","score_opus":0.08802229103627593,"score_gpt":0.39634707096117044,"score_spread":0.3083247799248945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2773151689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952856,0.00059710117,0.0015607467,0.00014110314,0.000012560156,0.000021958553,0.0005642003,0.000019792282,0.0017968591],"genre_scores_gemma":[0.9980128,0.00032792176,0.00095616194,0.00009092209,0.000009756102,0.0000071218806,0.00044143197,0.000004130619,0.000149736],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99948645,0.0001319415,0.000023973147,0.00015029586,0.000098626224,0.00010868271],"domain_scores_gemma":[0.9992895,0.00017278756,0.00025922706,0.00009722693,0.00010940091,0.00007184512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035857505,0.00021727907,0.0002034417,0.0009474597,0.00042092835,0.000628559,0.00018483214,0.0004154231,0.0024611286],"category_scores_gemma":[0.00096674275,0.00013602129,0.00020763073,0.00088367803,0.00033443607,0.00025169167,0.00049431477,0.000391243,0.00021395262],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003751087,0.00015213832,0.8771534,0.00023776124,0.0002644553,0.0012120679,0.0011709215,0.0003252786,0.084783144,0.0008929036,0.0009023733,0.032530498],"study_design_scores_gemma":[0.000018217574,0.0002865842,0.9874643,0.0001098524,0.000087880995,0.0018182028,0.001639867,0.00077277666,0.0038292818,0.0005116015,0.0034461564,0.000015369906],"about_ca_topic_score_codex":0.0054081567,"about_ca_topic_score_gemma":0.00346476,"teacher_disagreement_score":0.0054081567,"about_ca_system_score_codex":0.00027638022,"about_ca_system_score_gemma":0.00034772154,"threshold_uncertainty_score":0.010753393},"labels":[],"label_agreement":null},{"id":"W2781651578","doi":"10.1128/jcm.01666-17","title":"Evaluation of Simplexa Group A Strep Direct Kit Compared to Hologic Group A Streptococcal Direct Assay for Detection of Group A Streptococcus in Throat Swabs","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Calgary Laboratory Services","keywords":"Throat; Pharyngitis; Throat culture; Streptococcus; Streptococcus pyogenes; Medicine; Group A; Real-time polymerase chain reaction; Predictive value; Veterinary medicine; Internal medicine; Microbiology; Biology; Surgery; Bacteria","score_opus":0.12870920931311886,"score_gpt":0.445182399383465,"score_spread":0.31647319007034613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2781651578","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98613805,0.0047022635,0.0044937553,0.0002452935,0.0002306355,0.00030488428,0.0010253213,0.00021276134,0.0026469827],"genre_scores_gemma":[0.9796109,0.0015495688,0.014963607,0.0002543996,0.000061075065,0.00013927989,0.0015821564,0.000043963122,0.001794972],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.989028,0.0027188424,0.0005585556,0.0016996015,0.00552919,0.00046584403],"domain_scores_gemma":[0.9917788,0.0039426554,0.0010742327,0.00030389926,0.0023936345,0.00050671544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007602876,0.0010350262,0.0012646128,0.0015030375,0.00035904316,0.0015585977,0.0008549287,0.0009680193,0.0011964634],"category_scores_gemma":[0.009957146,0.0005450815,0.00074123597,0.0012569083,0.0008600795,0.0005847767,0.00063814357,0.00075463287,0.0005171401],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018110896,0.0023323717,0.40608537,0.0029100284,0.0011619318,0.00072120805,0.0025396708,0.0030462102,0.4381597,0.000335066,0.0028845393,0.1217129],"study_design_scores_gemma":[0.0005233876,0.05316176,0.6555412,0.00033044085,0.0017061959,0.0028736,0.0014068461,0.02527289,0.25127554,0.0002504573,0.0073070726,0.00035057595],"about_ca_topic_score_codex":0.011899841,"about_ca_topic_score_gemma":0.022570042,"teacher_disagreement_score":0.011899841,"about_ca_system_score_codex":0.0010234349,"about_ca_system_score_gemma":0.0012426901,"threshold_uncertainty_score":0.04020828},"labels":[],"label_agreement":null},{"id":"W2789290702","doi":"10.1128/jcm.01778-17","title":"Universal Genotyping for Tuberculosis Prevention Programs: a 5-Year Comparison with On-Request Genotyping","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"Canadian Institutes of Health Research; British Columbia Centre for Disease Control; Killam Trusts; Michael Smith Health Research BC; University of British Columbia; Canada Research Chairs; Government of Canada","keywords":"Genotyping; Tuberculosis; Mycobacterium tuberculosis; Biology; Genotype; Medicine; Virology; Genetics; Computational biology; Pathology; Gene","score_opus":0.11915884165710991,"score_gpt":0.45072350128158106,"score_spread":0.3315646596244711,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789290702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735427,0.00113688,0.0003927379,0.00015847509,0.000042640622,0.00009707594,0.00030393442,0.000014164995,0.0004997318],"genre_scores_gemma":[0.99890053,0.00021244372,0.00025287308,0.00009107676,0.0000134268175,0.000049488546,0.00039750148,0.0000026630153,0.00007989686],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9897883,0.0059097344,0.0006376514,0.0010640773,0.0013493423,0.0012508843],"domain_scores_gemma":[0.9861428,0.00482957,0.0047433698,0.0008630948,0.0012217285,0.0021994198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014143941,0.0005799563,0.0007946899,0.0008584514,0.0005372157,0.00082347484,0.0009832915,0.0014230533,0.00093322975],"category_scores_gemma":[0.021531053,0.00031538968,0.0011156296,0.0010512533,0.00060532405,0.0013691279,0.0011908801,0.0008409831,0.00010644602],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023652816,0.0023954143,0.9055205,0.0003983611,0.00088728685,0.00024237648,0.00095358625,0.0016141292,0.000557041,0.00023099556,0.00089302345,0.062654436],"study_design_scores_gemma":[0.00034553214,0.011562829,0.98453856,0.00007085746,0.00040031737,0.00011881282,0.00042126258,0.0017681809,0.00020233866,0.00005864455,0.0004901212,0.000022547087],"about_ca_topic_score_codex":0.025594102,"about_ca_topic_score_gemma":0.027181648,"teacher_disagreement_score":0.025594102,"about_ca_system_score_codex":0.0022350238,"about_ca_system_score_gemma":0.0019741904,"threshold_uncertainty_score":0.07480121},"labels":[],"label_agreement":null},{"id":"W2789683631","doi":"10.1128/jcm.01673-17","title":"Performance of the Xpert HIV-1 Viral Load Assay: a Systematic Review and Meta-analysis","year":2018,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"GeneXpert MTB/RIF; Viral load; Medicine; Human immunodeficiency virus (HIV); Point of care; Confidence interval; Point-of-care testing; External quality assessment; Tuberculosis; Virology; Internal medicine; Immunology; Mycobacterium tuberculosis; Pathology","score_opus":0.12132623883971479,"score_gpt":0.4189369186077176,"score_spread":0.2976106797680028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2789683631","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004051296,0.99443674,0.00031040082,0.0001756421,0.00009825988,0.00020099457,0.00049970305,0.000016082256,0.00021099215],"genre_scores_gemma":[0.16621175,0.8289302,0.001393701,0.00097175833,0.00027790992,0.0009779622,0.0009356758,0.00003476066,0.0002661739],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.98891544,0.004852451,0.003226394,0.0011336785,0.0015253798,0.00034672866],"domain_scores_gemma":[0.9577175,0.031976987,0.0057416395,0.00087077625,0.0033436213,0.0003494192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.016386101,0.0024245288,0.017048186,0.006883445,0.0006840097,0.0033691318,0.0024061531,0.0020709205,0.003856138],"category_scores_gemma":[0.043972764,0.0013054768,0.02648758,0.008104794,0.00086747296,0.0019977088,0.0013646972,0.0015510278,0.0003570093],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015249186,0.0000259248,0.005970432,0.59462684,0.3826338,0.000119709075,0.000084508494,0.00043556647,0.00020698701,0.00011167075,0.0009373469,0.013322272],"study_design_scores_gemma":[0.0004951961,0.00020667801,0.006470637,0.06186338,0.928287,0.00012669072,0.000056159723,0.00019811084,0.00014776022,0.00017208426,0.0019456152,0.000030707673],"about_ca_topic_score_codex":0.006873279,"about_ca_topic_score_gemma":0.015792439,"teacher_disagreement_score":0.017048186,"about_ca_system_score_codex":0.002820107,"about_ca_system_score_gemma":0.004012303,"threshold_uncertainty_score":0.086659074},"labels":[],"label_agreement":null},{"id":"W2791084930","doi":"10.1128/jcm.01481-17","title":"Evaluation of the Copan ESwab Transport System for Viability of Pathogenic Fungi by Use of a Modification of Clinical and Laboratory Standards Institute Document M40-A2","year":2017,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; University Health Network","funders":"","keywords":"Homogeneous; Clinical microbiology; Turbidity; Agar; Biology; Microbiology; Mathematics; Ecology; Bacteria","score_opus":0.1328478360865584,"score_gpt":0.4551283200886645,"score_spread":0.32228048400210607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791084930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9337032,0.0028723294,0.05197072,0.00043558815,0.000228555,0.0025206436,0.0017328218,0.0006186807,0.005917424],"genre_scores_gemma":[0.83420545,0.0036728773,0.14058545,0.00041731674,0.00016221816,0.003756268,0.00835594,0.00022996843,0.008614545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.993349,0.0020330828,0.0008244235,0.00066975155,0.0029179042,0.00020588476],"domain_scores_gemma":[0.9956181,0.0008977797,0.0008394364,0.00061009,0.0018813821,0.00015312646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003123702,0.0007844465,0.00075449515,0.0013065184,0.0006352654,0.0010212497,0.0010732204,0.0007929942,0.0021137393],"category_scores_gemma":[0.0044359043,0.00033622695,0.00044297223,0.0013501554,0.00058058125,0.00066146324,0.00060219364,0.0006160341,0.001148953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066581764,0.00040843434,0.0040393164,0.00023682127,0.00003373022,0.000082170154,0.00030224517,0.00012777538,0.9781503,0.00027288604,0.00053802365,0.01514252],"study_design_scores_gemma":[0.00008819677,0.004887309,0.025471589,0.0001280776,0.00016933269,0.0010483634,0.00024373354,0.0019451648,0.9546547,0.000114448245,0.011194279,0.00005476351],"about_ca_topic_score_codex":0.0015941801,"about_ca_topic_score_gemma":0.0025603436,"teacher_disagreement_score":0.003123702,"about_ca_system_score_codex":0.00031811418,"about_ca_system_score_gemma":0.0009349996,"threshold_uncertainty_score":0.016519904},"labels":[],"label_agreement":null},{"id":"W2791675566","doi":"10.1128/jcm.01892-17","title":"Analysis of Potential β-Lactam Surrogates To Predict <i>In Vitro</i> Susceptibility and Resistance to Ceftaroline for Clinical Isolates of Enterobacteriaceae","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotics Pharmacokinetics and Efficacy","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Enterobacteriaceae; Lactam; Microbiology; Cephalosporin; In vitro; Biology; Enterobacteriaceae Infections; Beta-lactam; Antibiotics; Chemistry; Escherichia coli; Genetics; Gene","score_opus":0.03835697099822633,"score_gpt":0.4058698285911149,"score_spread":0.3675128575928886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791675566","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963561,0.00022727065,0.0027872073,0.000036989877,0.000007677315,0.00003456151,0.00036785327,0.000022792083,0.00015945578],"genre_scores_gemma":[0.9957783,0.00007168218,0.0032867827,0.00002666321,0.000003634143,0.000016538885,0.0007524585,0.000006053375,0.000057865498],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967078,0.0015835462,0.00031796092,0.000538429,0.0007258242,0.00012644005],"domain_scores_gemma":[0.9961318,0.0012457304,0.0012597803,0.00038858643,0.0007978946,0.00017622528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029329807,0.00079163525,0.0005224588,0.0007085588,0.00015274737,0.0006640412,0.00033596356,0.0004554077,0.00025227305],"category_scores_gemma":[0.0068491763,0.00021494288,0.0006128971,0.000821031,0.00026160502,0.00026575173,0.00037425218,0.0004282211,0.00019067549],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017344914,0.0005685494,0.8363631,0.000112912916,0.00043417525,0.0001345958,0.00021329247,0.004486199,0.140774,0.000065760665,0.0001969672,0.014916053],"study_design_scores_gemma":[0.00009382206,0.006817865,0.7018056,0.000057628007,0.0004340892,0.00133931,0.0005338609,0.038362008,0.24893887,0.00013911541,0.0014158033,0.000062014195],"about_ca_topic_score_codex":0.0024314066,"about_ca_topic_score_gemma":0.0017916843,"teacher_disagreement_score":0.0029329807,"about_ca_system_score_codex":0.00038571598,"about_ca_system_score_gemma":0.0003050312,"threshold_uncertainty_score":0.015511274},"labels":[],"label_agreement":null},{"id":"W2792176390","doi":"10.1128/jcm.01954-17","title":"Diagnostic Yield of Laboratory Methods and Value of Viral Genotyping during an Outbreak of Mumps in a Partially Vaccinated Population in British Columbia, Canada","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"","keywords":"Outbreak; Virology; Mumps virus; Genotyping; Buccal swab; Population; Medicine; Genotype; Vaccination; Rubella; Measles; Biology; Virus; Gene; Genetics; Environmental health","score_opus":0.02229689485858754,"score_gpt":0.3688041450358947,"score_spread":0.34650725017730716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792176390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99751484,0.0002704955,0.00007348614,0.000089250585,0.0000058176383,0.00002802078,0.000483527,0.0000125435645,0.0015220426],"genre_scores_gemma":[0.99915934,0.00012454306,0.00013944025,0.000044885215,0.0000019849533,0.000005299477,0.00024484526,0.0000023655589,0.00027728867],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99914646,0.00011884928,0.0000532238,0.00013347148,0.00028401744,0.000263854],"domain_scores_gemma":[0.99801683,0.00019609288,0.00019437844,0.000068117,0.0011772375,0.00034730975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055215677,0.00044435452,0.00033316758,0.0013752065,0.0021276958,0.0011205171,0.0011679956,0.00040824545,0.0009039453],"category_scores_gemma":[0.002610535,0.00036574723,0.00018507992,0.0015575108,0.0007803995,0.00020764656,0.00064488297,0.0005503283,0.00018020747],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010731664,0.000039857478,0.9919416,0.00002146075,0.000023887167,0.00038148332,0.00053042546,0.00014939735,0.0013693197,0.000019394089,0.00045774176,0.0049579926],"study_design_scores_gemma":[0.0000038355956,0.000034416556,0.99739313,0.00001817006,0.000012295873,0.00021198865,0.0013267245,0.00049820205,0.00022350269,0.000009339606,0.00026103613,0.000007441966],"about_ca_topic_score_codex":0.97481334,"about_ca_topic_score_gemma":0.97649,"teacher_disagreement_score":0.025186658,"about_ca_system_score_codex":0.011336209,"about_ca_system_score_gemma":0.007890252,"threshold_uncertainty_score":0.0822503},"labels":[],"label_agreement":null},{"id":"W2793220261","doi":"10.1128/jcm.01934-17","title":"CLSI Methods Development and Standardization Working Group Best Practices for Evaluation of Antimicrobial Susceptibility Tests","year":2018,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":747,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta","funders":"","keywords":"Standardization; Medicine; Medical physics; Computer science","score_opus":0.3671917425813457,"score_gpt":0.5593165973703706,"score_spread":0.19212485478902497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793220261","genre_codex":"review","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005233505,0.92036957,0.03357708,0.018840803,0.0077110655,0.0022926002,0.0021038582,0.00089174596,0.013689891],"genre_scores_gemma":[0.002886713,0.888782,0.08696849,0.0068679615,0.0021111348,0.003197193,0.0040137866,0.00034444532,0.0048282873],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.93398607,0.021114616,0.0153557835,0.0025286917,0.025408836,0.0016060502],"domain_scores_gemma":[0.84016085,0.063688934,0.014097364,0.0077315317,0.07178587,0.0025353255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.07611973,0.0030536042,0.0049298382,0.022474216,0.0015373827,0.006283435,0.010333632,0.005459689,0.0076900125],"category_scores_gemma":[0.0880843,0.0018004932,0.004224112,0.0101987235,0.0051063085,0.004881527,0.0050283233,0.008764076,0.009262012],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012054046,0.00018228286,0.0007410965,0.055692513,0.00023586636,0.00038064955,0.0006782361,0.00056116213,0.0026208698,0.01676389,0.14836086,0.773662],"study_design_scores_gemma":[0.000019714707,0.00009550641,0.000823495,0.02057293,0.0001907324,0.0004373115,0.0001575979,0.00013617829,0.0016169929,0.003341331,0.9725471,0.00006117939],"about_ca_topic_score_codex":0.0065438203,"about_ca_topic_score_gemma":0.0060057556,"teacher_disagreement_score":0.07611973,"about_ca_system_score_codex":0.005617394,"about_ca_system_score_gemma":0.038479704,"threshold_uncertainty_score":0.4025644},"labels":[],"label_agreement":null},{"id":"W2796450046","doi":"10.1128/jcm.00252-18","title":"Diagnostic Performance of a Molecular Test versus Clinician Assessment of Vaginitis","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada)","funders":"National Institute of Biomedical Imaging and Bioengineering; BD","keywords":"Vaginitis; Diagnostic test; Medicine; Test (biology); Trichomonas Vaginitis; Gynecology; Biology; Pediatrics","score_opus":0.060783103128423464,"score_gpt":0.4423259217284995,"score_spread":0.38154281860007605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2796450046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978309,0.00078213855,0.00052351644,0.000070455666,0.000035381214,0.000022456961,0.0000686788,0.000012401983,0.00065409264],"genre_scores_gemma":[0.99913234,0.00008893706,0.00060310715,0.000043464835,0.000016794686,0.0000072873627,0.000053301937,0.000001536035,0.000053200976],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99147743,0.005178715,0.0006258681,0.00076963566,0.0016562248,0.0002921794],"domain_scores_gemma":[0.9726704,0.018811636,0.0034861923,0.0005786128,0.003543274,0.00090994587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0077751083,0.0003104814,0.00045803338,0.0013472994,0.00020887592,0.0012674654,0.00037088076,0.0006541394,0.001077323],"category_scores_gemma":[0.035296503,0.00022171468,0.00026156785,0.00057009014,0.00041985116,0.0006100191,0.00047131476,0.0003701748,0.00039759895],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011272255,0.00019244503,0.98503125,0.00008314402,0.00010233173,0.00010220416,0.00020989038,0.00026790684,0.0026025225,0.00003743073,0.00017669876,0.010066945],"study_design_scores_gemma":[0.000095289826,0.0059329956,0.96703804,0.00013169977,0.00019102811,0.0023214938,0.0011470063,0.015571289,0.006590448,0.00011744279,0.0008239104,0.0000393491],"about_ca_topic_score_codex":0.00069966115,"about_ca_topic_score_gemma":0.00076147274,"teacher_disagreement_score":0.0077751083,"about_ca_system_score_codex":0.00038773296,"about_ca_system_score_gemma":0.0002800299,"threshold_uncertainty_score":0.041119218},"labels":[],"label_agreement":null},{"id":"W2800469711","doi":"10.1128/jcm.00423-18","title":"ThermoMixer-Aided Endpoint Quaking-Induced Conversion (EP-QuIC) Permits Faster Sporadic Creutzfeldt-Jakob Disease (sCJD) Identification than Real-Time Quaking-Induced Conversion (RT-QuIC)","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Virology; Identification (biology); Biology","score_opus":0.04232704465161016,"score_gpt":0.33305788366098255,"score_spread":0.29073083900937235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800469711","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.050094236,0.009244121,0.037625372,0.7975622,0.061614748,0.00037040026,0.0005716743,0.002217267,0.040700033],"genre_scores_gemma":[0.38937005,0.008636117,0.073086254,0.41630226,0.027836291,0.0007017252,0.0009596259,0.00061431754,0.082493365],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855846,0.00043772117,0.00023347067,0.00017930374,0.0004426706,0.00014843808],"domain_scores_gemma":[0.9963775,0.002460882,0.0002823143,0.00026626172,0.000482873,0.00013019361],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018848842,0.000555292,0.00060895225,0.00023581744,0.0007902097,0.0015198613,0.0005913991,0.006925865,0.0040102894],"category_scores_gemma":[0.006498833,0.00032288747,0.0004906588,0.0001843376,0.0010149465,0.00071290036,0.00040433943,0.009308415,0.0037073107],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015101131,0.0006072714,0.004773233,0.0005455187,0.000067959656,0.025727006,0.0006760607,0.00068006787,0.19859944,0.018542686,0.5826941,0.16557647],"study_design_scores_gemma":[0.0002502006,0.0008672629,0.0032696933,0.00014183653,0.000076656244,0.021020293,0.00026434916,0.004793143,0.102152966,0.0109838415,0.8560812,0.0000985815],"about_ca_topic_score_codex":0.00038493465,"about_ca_topic_score_gemma":0.00089455897,"teacher_disagreement_score":0.006925865,"about_ca_system_score_codex":0.00091722433,"about_ca_system_score_gemma":0.00040966956,"threshold_uncertainty_score":0.013415754},"labels":[],"label_agreement":null},{"id":"W2807185452","doi":"10.1128/jcm.00527-18","title":"Higher Sensitivity of the <i>recom</i> Line Borrelia IgG Immunoblot Kit than of the Standard Lyme IgG Immunoblot Kit According to CDC Testing Criteria","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Borrelia; Lyme disease; Biology; Borrelia burgdorferi; Virology; Spirochaetaceae; Microbiology; Antibody; Immunology","score_opus":0.04628656161088868,"score_gpt":0.3336427765374415,"score_spread":0.28735621492655283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2807185452","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18978836,0.015596382,0.023531068,0.37516505,0.029464243,0.00042555388,0.000592376,0.002040118,0.36339682],"genre_scores_gemma":[0.7786218,0.0037796812,0.019505346,0.14279501,0.013108871,0.00027197617,0.00076492794,0.0003260149,0.04082633],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9941011,0.001848243,0.0007680648,0.00097134395,0.0014875202,0.0008237944],"domain_scores_gemma":[0.99088097,0.0054825637,0.00043921452,0.0007641384,0.0021090573,0.00032402624],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024975496,0.0008061992,0.00063550065,0.0008560924,0.00076174346,0.0017388436,0.0012682719,0.0063682757,0.014109308],"category_scores_gemma":[0.011201065,0.0003334059,0.0005794841,0.0004905627,0.0010503583,0.0013705135,0.00039660544,0.0047322907,0.007517067],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011473909,0.00086345425,0.06919356,0.0010768442,0.00012827825,0.14867115,0.0021013047,0.00092458376,0.06932366,0.01545831,0.50407976,0.18703167],"study_design_scores_gemma":[0.00021653407,0.0009440072,0.031774983,0.00073654484,0.00013042067,0.45292693,0.0010501109,0.005694898,0.029340222,0.008801698,0.46822402,0.00015962355],"about_ca_topic_score_codex":0.0013066392,"about_ca_topic_score_gemma":0.0014120034,"teacher_disagreement_score":0.014109308,"about_ca_system_score_codex":0.0014590994,"about_ca_system_score_gemma":0.00047088097,"threshold_uncertainty_score":0.04720038},"labels":[],"label_agreement":null},{"id":"W2808502813","doi":"10.1128/jcm.00235-18","title":"Serratia marcescens Outbreak in a Neonatal Intensive Care Unit: New Insights from Next-Generation Sequencing Applications","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Institut National de la Recherche Scientifique; National Research Council Canada; McGill University; McGill University Health Centre; Université de Montréal; Ste. Anne's Hospital","funders":"","keywords":"Serratia marcescens; Outbreak; Biology; Pulsed-field gel electrophoresis; Microbiology; Typing; Multilocus sequence typing; Serratia; 16S ribosomal RNA; Bacteria; Genetics; Gene; Virology; Escherichia coli; Genotype","score_opus":0.11918962375345375,"score_gpt":0.3615702968466032,"score_spread":0.24238067309314942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808502813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899719,0.0011754562,0.006919205,0.00030557378,0.000056738743,0.00006755464,0.0003411009,0.000059806047,0.0011026398],"genre_scores_gemma":[0.9778856,0.0017651368,0.019018674,0.00022836935,0.000055235356,0.000043687804,0.00047982644,0.000018368211,0.00050510844],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993463,0.00014579308,0.000082771076,0.00013839116,0.00019376246,0.000093004965],"domain_scores_gemma":[0.99935144,0.00021482666,0.00013213356,0.00005712494,0.00017221736,0.000072249546],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093657325,0.0003906124,0.00038764294,0.00043913763,0.00036680733,0.0008876523,0.00025078646,0.0006307007,0.0004475114],"category_scores_gemma":[0.0013195134,0.00017088956,0.00038470735,0.00041582363,0.00033414285,0.00048510774,0.00045035486,0.0005409056,0.00020723161],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046064472,0.00028019896,0.117120154,0.0004961748,0.00006345552,0.0031183704,0.0010363118,0.00087843096,0.8320257,0.00013518354,0.00033802172,0.044047344],"study_design_scores_gemma":[0.00003944716,0.0015717739,0.6250661,0.00030040732,0.00037775043,0.009809774,0.0043141134,0.01457746,0.3331234,0.00078040204,0.009907639,0.00013185144],"about_ca_topic_score_codex":0.0026043493,"about_ca_topic_score_gemma":0.0046222243,"teacher_disagreement_score":0.0026043493,"about_ca_system_score_codex":0.0002238808,"about_ca_system_score_gemma":0.00048277515,"threshold_uncertainty_score":0.005178392},"labels":[],"label_agreement":null},{"id":"W2808824345","doi":"10.1128/jcm.00776-18","title":"Identification of Biomarkers for Differentiation of Hypervirulent Klebsiella pneumoniae from Classical K. pneumoniae","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":759,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention; U.S. Department of Veterans Affairs","keywords":"Klebsiella pneumoniae; Microbiology; Klebsiella infections; Biology; Klebsiella; Identification (biology); Virology; Escherichia coli; Genetics; Gene","score_opus":0.02625152820939046,"score_gpt":0.33687350859514287,"score_spread":0.3106219803857524,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2808824345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99049115,0.0042045354,0.0034284394,0.00011692314,0.000047197587,0.000045084682,0.0005031788,0.000074658165,0.001088935],"genre_scores_gemma":[0.9961688,0.00032770223,0.0029059264,0.000029121004,0.000020801364,0.000009793014,0.00029380166,0.0000072961957,0.00023674],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980058,0.000699185,0.0002277944,0.00031270576,0.0005121822,0.00024225128],"domain_scores_gemma":[0.9910431,0.00357232,0.0027675736,0.00071153266,0.0011914413,0.00071401923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030700837,0.00090438384,0.00071864965,0.0013556579,0.00029735116,0.0011887839,0.0005280353,0.00068098254,0.0010356836],"category_scores_gemma":[0.0072845514,0.00024414388,0.00080416823,0.0010704548,0.0005378259,0.00093518983,0.000804974,0.0008181164,0.00043237628],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085734355,0.000069437374,0.97439224,0.00012674651,0.00024119126,0.00012616524,0.000041136438,0.0004090093,0.008215461,0.00005266225,0.00015942528,0.015309177],"study_design_scores_gemma":[0.000014384853,0.00078025594,0.9824463,0.00006159287,0.00024388883,0.0013985905,0.0001945954,0.0039584027,0.0095235165,0.0003045022,0.001046744,0.000027095943],"about_ca_topic_score_codex":0.0007576979,"about_ca_topic_score_gemma":0.0017770792,"teacher_disagreement_score":0.0030700837,"about_ca_system_score_codex":0.0003347525,"about_ca_system_score_gemma":0.00039362532,"threshold_uncertainty_score":0.016236365},"labels":[],"label_agreement":null},{"id":"W2809502079","doi":"10.1128/jcm.00731-18","title":"Multiplex PCR Analysis for Rapid Detection of Klebsiella pneumoniae Carbapenem-Resistant (Sequence Type 258 [ST258] and ST11) and Hypervirulent (ST23, ST65, ST86, and ST375) Strains","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Cancer Institute; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Klebsiella pneumoniae; Microbiology; Multiplex polymerase chain reaction; Biology; Multiplex; Virology; Carbapenem; Enterobacteriaceae; Polymerase chain reaction; Gene; Antibiotics; Escherichia coli; Bioinformatics; Genetics","score_opus":0.04873140321835471,"score_gpt":0.3489647585602838,"score_spread":0.3002333553419291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809502079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8401136,0.0048438967,0.14135061,0.00036065438,0.00047072704,0.0008319987,0.002995514,0.0011041866,0.007928806],"genre_scores_gemma":[0.7932837,0.0030789876,0.18542846,0.00044690832,0.00015685355,0.0011307476,0.004000492,0.00006882393,0.012404977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872106,0.00016266762,0.00011838655,0.00046279584,0.00039223762,0.00014278332],"domain_scores_gemma":[0.99917525,0.00026567376,0.00016738317,0.000052134474,0.00020889082,0.00013059156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007798159,0.0009151036,0.0005856912,0.0022837808,0.00028521375,0.00061965286,0.00063892984,0.00089869427,0.0020340416],"category_scores_gemma":[0.001232506,0.0006281362,0.0003750789,0.0008477729,0.00034699152,0.0004847892,0.00038808127,0.00065833033,0.0008431925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033830557,0.00020115636,0.008437176,0.00010790119,0.000034681325,0.0001889217,0.00018326573,0.00021924773,0.9684857,0.0003643378,0.0003309339,0.021108387],"study_design_scores_gemma":[0.00012137076,0.0023178468,0.055746254,0.0002193352,0.00024458297,0.0043607764,0.00052795315,0.02948594,0.89164454,0.0011141767,0.014084258,0.00013290366],"about_ca_topic_score_codex":0.00051917863,"about_ca_topic_score_gemma":0.001319438,"teacher_disagreement_score":0.0022837808,"about_ca_system_score_codex":0.0004211423,"about_ca_system_score_gemma":0.00034281643,"threshold_uncertainty_score":0.006804526},"labels":[],"label_agreement":null},{"id":"W2883423601","doi":"10.1128/jcm.01137-18","title":"A List To Cement the Rightful Place of Diagnostics in Health Care","year":2018,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Pharmaceutical Economics and Policy","field":"Economics, Econometrics and Finance","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Cement; MEDLINE; Medicine; Data science; Computer science; History; Political science; Archaeology; Law","score_opus":0.07406482268287204,"score_gpt":0.41702483786748434,"score_spread":0.3429600151846123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883423601","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000140036445,0.0043286243,0.0001405377,0.050438996,0.9441017,0.000009354505,0.00003196967,0.000030882104,0.000903939],"genre_scores_gemma":[0.00028210663,0.0031274715,0.00019325255,0.021838805,0.97123563,0.0000153096,0.000013645317,0.000035815247,0.0032580097],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.98119384,0.004281493,0.0031098893,0.0017306829,0.008384051,0.0012999193],"domain_scores_gemma":[0.8865325,0.067954145,0.004934185,0.003389229,0.027837334,0.009352662],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.023522833,0.0052775797,0.0048239245,0.0058847805,0.0051352587,0.018390376,0.0052517396,0.03396772,0.020273624],"category_scores_gemma":[0.10194905,0.0016760151,0.003219476,0.0027486307,0.008146891,0.012209392,0.0040198597,0.047476627,0.011054114],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023148494,0.000012395542,0.000016426498,0.000275108,0.000021018532,0.000068124275,0.000022947288,0.000030124398,0.000029520395,0.0021194748,0.9923366,0.005045162],"study_design_scores_gemma":[0.00009330804,0.000030309557,0.00019334389,0.0011918822,0.00006466964,0.00014563177,0.00011424993,0.00017994223,0.00010841887,0.00990638,0.98792714,0.000044740187],"about_ca_topic_score_codex":0.0019245864,"about_ca_topic_score_gemma":0.0048768013,"teacher_disagreement_score":0.03396772,"about_ca_system_score_codex":0.005021471,"about_ca_system_score_gemma":0.008565486,"threshold_uncertainty_score":0.124402165},"labels":[],"label_agreement":null},{"id":"W2889028908","doi":"10.1128/jcm.01105-18","title":"Bordetella holmesii Contamination of Platelet Concentrates: Revisiting the Definition of a Positive Culture","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Héma-Québec","funders":"","keywords":"Microbiology; Contamination; Pathogenic organism; Medicine; Biology; Ecology","score_opus":0.060620932665590384,"score_gpt":0.39351036749362656,"score_spread":0.3328894348280362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889028908","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77170664,0.079663396,0.064380124,0.04059087,0.0063540326,0.0005249165,0.0007100722,0.00049719145,0.035572685],"genre_scores_gemma":[0.9244954,0.02208883,0.043329097,0.005372867,0.0026642468,0.00013312933,0.000515778,0.00015417668,0.001246317],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.98385954,0.004964496,0.0044197803,0.0009158189,0.0048428066,0.0009975757],"domain_scores_gemma":[0.98300856,0.006851764,0.0027260685,0.0011080116,0.004871482,0.0014341758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.011521734,0.0011098402,0.0021067797,0.0051920475,0.0017703898,0.006764716,0.0034090558,0.0026762153,0.0006046923],"category_scores_gemma":[0.022773324,0.00081501715,0.001159455,0.0028451735,0.008810005,0.004185784,0.0027278583,0.0044429684,0.0005959015],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015669545,0.00084242836,0.5053689,0.0054915105,0.00024104462,0.06560485,0.016438294,0.001404415,0.12081099,0.026817009,0.01998263,0.23543102],"study_design_scores_gemma":[0.00015396469,0.0038392865,0.3547763,0.013165159,0.0014303912,0.27751076,0.049066197,0.016602864,0.097930476,0.019630222,0.16500369,0.0008907339],"about_ca_topic_score_codex":0.009253804,"about_ca_topic_score_gemma":0.011212918,"teacher_disagreement_score":0.011521734,"about_ca_system_score_codex":0.0016594004,"about_ca_system_score_gemma":0.0032952419,"threshold_uncertainty_score":0.06093353},"labels":[],"label_agreement":null},{"id":"W2894510859","doi":"10.1128/jcm.01387-18","title":"Rapid Identification of Candida Species from Positive Blood Cultures by Use of the FilmArray Blood Culture Identification Panel","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Health Sciences Centre; University of Toronto; Mount Sinai Hospital; Sunnybrook Health Science Centre","funders":"","keywords":"Blood culture; Identification (biology); Microbiology; Biology; Antibiotics; Ecology","score_opus":0.04519174991621304,"score_gpt":0.30598578841852137,"score_spread":0.2607940385023083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894510859","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0743051,0.00707324,0.01299771,0.82487255,0.025595892,0.00023609912,0.0003890738,0.000461465,0.054068863],"genre_scores_gemma":[0.597964,0.0064769606,0.0147191975,0.29929057,0.049699552,0.00021461217,0.00047658678,0.00021949339,0.030939111],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905604,0.0002509019,0.00012898078,0.00012185015,0.00027091656,0.00017122738],"domain_scores_gemma":[0.9980028,0.0011276328,0.000115218725,0.00012243255,0.00037332682,0.0002585508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005689201,0.0006029202,0.0006045339,0.0005876197,0.00062813325,0.0010700276,0.0007274134,0.005300504,0.002704306],"category_scores_gemma":[0.00715395,0.00037591276,0.0005470964,0.0002324633,0.0007610005,0.0012411576,0.00037389738,0.008388375,0.002460095],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062276423,0.00033952214,0.017274117,0.00020147825,0.00004366811,0.38103908,0.000746813,0.00033810234,0.020434173,0.0044732634,0.49017203,0.08431508],"study_design_scores_gemma":[0.0002837573,0.00081378035,0.017851995,0.0005157007,0.00010174981,0.653036,0.0010842916,0.0067187776,0.017709898,0.011275543,0.2904705,0.00013805494],"about_ca_topic_score_codex":0.0011326596,"about_ca_topic_score_gemma":0.0015435353,"teacher_disagreement_score":0.005300504,"about_ca_system_score_codex":0.00089525385,"about_ca_system_score_gemma":0.00051101745,"threshold_uncertainty_score":0.009046733},"labels":[],"label_agreement":null},{"id":"W2898464210","doi":"10.1128/jcm.01262-17","title":"Photo Quiz: A 5-Year-Old Boy with an Unusual Arthritis of the Right Knee","year":2018,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Rheumatoid Arthritis Research and Therapies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Arthritis; Medicine; Surgery; Internal medicine","score_opus":0.0168243702427529,"score_gpt":0.35001351904322303,"score_spread":0.3331891488004701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898464210","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002221231,0.0154265035,0.0005551974,0.12375044,0.84468114,0.000057010697,0.00016458327,0.00022130486,0.012922609],"genre_scores_gemma":[0.018728193,0.013685206,0.00039733408,0.045775615,0.8976113,0.000031361316,0.00010288669,0.000079491256,0.023588533],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.99909747,0.00016586804,0.00014021141,0.0001294591,0.00034751045,0.000119531134],"domain_scores_gemma":[0.99689937,0.0018177916,0.00020040745,0.00008481012,0.00054615387,0.00045146796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008733656,0.0022149729,0.0016537557,0.00130606,0.0012689523,0.0018265576,0.0013941189,0.009485216,0.0110323],"category_scores_gemma":[0.0076660058,0.0007676789,0.0011060502,0.00034611995,0.0009463612,0.0024811954,0.0007751409,0.008597292,0.004740007],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094469586,0.000063441476,0.00038133288,0.00035391972,0.000025884567,0.06369301,0.000098099415,0.00009516903,0.00035803253,0.0005343157,0.9251905,0.009111907],"study_design_scores_gemma":[0.00017943862,0.00013740295,0.0018933932,0.0010251858,0.00010243662,0.10023117,0.00061374967,0.00044472158,0.00068618613,0.0015950693,0.89302367,0.00006759525],"about_ca_topic_score_codex":0.001316124,"about_ca_topic_score_gemma":0.0021290306,"teacher_disagreement_score":0.0110323,"about_ca_system_score_codex":0.001051925,"about_ca_system_score_gemma":0.00060498953,"threshold_uncertainty_score":0.03690678},"labels":[],"label_agreement":null},{"id":"W2898527144","doi":"10.1128/jcm.01688-18","title":"Higher Positivity Rate with Fourth-Generation QuantiFERON-TB Gold Plus Assay in Low-Risk U.S. Health Care Workers","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Medicine; Gold standard (test); Environmental health; Tuberculosis; QuantiFERON; Mycobacterium tuberculosis; Internal medicine; Pathology; Latent tuberculosis","score_opus":0.07903194023830834,"score_gpt":0.41366126068300063,"score_spread":0.3346293204446923,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2898527144","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.925759,0.0016263532,0.00070358644,0.049235318,0.0010776297,0.00003898012,0.00037024348,0.0001038481,0.02108503],"genre_scores_gemma":[0.987525,0.00030374827,0.00032644355,0.009981022,0.0007764003,0.000008765767,0.00007940768,0.0000083280665,0.0009908814],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99856275,0.000484579,0.00017430345,0.0002241159,0.00034041808,0.00021381413],"domain_scores_gemma":[0.99594045,0.001774725,0.00091492984,0.00025016788,0.0007582189,0.00036156134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007956552,0.00022591917,0.00024727083,0.0004756491,0.0009012982,0.00076427124,0.0003696779,0.0018383869,0.0022492744],"category_scores_gemma":[0.005331621,0.00013045856,0.00019249089,0.00045009694,0.000424768,0.0003241474,0.00021433075,0.0014075548,0.00051840104],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018308422,0.00018025075,0.94430745,0.000051247072,0.000021591992,0.020480003,0.0006504597,0.00010155954,0.0018843076,0.0002920345,0.018130666,0.013717424],"study_design_scores_gemma":[0.00006948006,0.00073605514,0.8117553,0.00027217178,0.000121379046,0.13843395,0.0045333747,0.0043157344,0.005572603,0.0010425796,0.033053964,0.000093449824],"about_ca_topic_score_codex":0.006379108,"about_ca_topic_score_gemma":0.0054215644,"teacher_disagreement_score":0.006379108,"about_ca_system_score_codex":0.0007629905,"about_ca_system_score_gemma":0.00038627398,"threshold_uncertainty_score":0.012683928},"labels":[],"label_agreement":null},{"id":"W2899570058","doi":"10.1128/jcm.00906-18","title":"<i>Mycobacterium talmoniae</i>, a Potential Pulmonary Pathogen Isolated from Multiple Patients with Bronchiectasis in the United States, Including the First Case of Clinical Disease in a Patient with Cystic Fibrosis","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"rpoB; Bronchiectasis; Cystic fibrosis; Biology; Microbiology; Respiratory disease; Pathogen; Lung disease; 16S ribosomal RNA; Ribosomal RNA; Pathology; Virology; Gene; Medicine; Genetics; Lung; Internal medicine","score_opus":0.027765518041001525,"score_gpt":0.3279064760303942,"score_spread":0.30014095798939266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899570058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985293,0.00017018044,0.0002075635,0.00020970797,0.0000086013715,0.0000131063225,0.00006073552,0.000010191798,0.00079060055],"genre_scores_gemma":[0.99930334,0.000075729986,0.00028467033,0.00014011304,0.000016267779,0.0000027173667,0.000082148006,0.0000023809607,0.00009253314],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.999757,0.00002976591,0.000034210203,0.00005778792,0.00003643047,0.00008476851],"domain_scores_gemma":[0.9995832,0.00008059021,0.00014590802,0.000030157127,0.00005347194,0.00010669648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019202472,0.0003969714,0.00017256629,0.0004597343,0.0009326093,0.00065054704,0.00025730507,0.00069727114,0.0007718847],"category_scores_gemma":[0.0007855555,0.00017530975,0.00025481224,0.000247409,0.00030284547,0.00029741382,0.0003870499,0.00048862526,0.0002736572],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022536442,0.00015973035,0.853556,0.000091223636,0.00004758008,0.08109898,0.002015884,0.00022440811,0.052661758,0.00013376655,0.0008719239,0.0089134],"study_design_scores_gemma":[0.000042703952,0.0011429647,0.7267792,0.00009155528,0.00015974592,0.2341929,0.00395106,0.0007620179,0.02637494,0.00013730647,0.006328621,0.000036931895],"about_ca_topic_score_codex":0.005001226,"about_ca_topic_score_gemma":0.010297097,"teacher_disagreement_score":0.005001226,"about_ca_system_score_codex":0.00044457082,"about_ca_system_score_gemma":0.0003076624,"threshold_uncertainty_score":0.0099442005},"labels":[],"label_agreement":null},{"id":"W2900806040","doi":"10.1128/jcm.01162-18","title":"MODS-Wayne, a Colorimetric Adaptation of the Microscopic-Observation Drug Susceptibility (MODS) Assay for Detection of <i>Mycobacterium tuberculosis</i> Pyrazinamide Resistance from Sputum Samples","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Grand Challenges Canada; Wellcome Trust","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Sputum; Tuberculosis; Microbiology; Drug resistance; Medicine; Biology; Pathology","score_opus":0.07466380892369046,"score_gpt":0.37980281655557746,"score_spread":0.305139007631887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900806040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.44174594,0.0237935,0.41825083,0.0018207548,0.0025707153,0.004472212,0.015594735,0.0210549,0.07069633],"genre_scores_gemma":[0.41586116,0.010051063,0.47569963,0.00090737775,0.00026230057,0.0028011566,0.01893985,0.0007366405,0.07474084],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99571437,0.0008531578,0.0003623611,0.00088982424,0.0019282664,0.00025194226],"domain_scores_gemma":[0.99870205,0.00020817612,0.0003621247,0.00020784404,0.0003692816,0.00015041654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013975938,0.0016558368,0.00090988394,0.0036260174,0.0005677533,0.00096370804,0.0014266146,0.0010289125,0.005518148],"category_scores_gemma":[0.0018652173,0.001131772,0.0010599297,0.0014507994,0.00078660605,0.0007866559,0.0018682015,0.0017243851,0.003136796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006286481,0.000308954,0.01434599,0.0008830156,0.00015945894,0.0001717311,0.00029303797,0.00031088715,0.8923963,0.001567412,0.007367107,0.08156753],"study_design_scores_gemma":[0.00021494582,0.0014313285,0.02517708,0.00015779976,0.00017509253,0.0021198636,0.00019150123,0.0049730036,0.9001251,0.0009517306,0.06434359,0.0001388769],"about_ca_topic_score_codex":0.0012557362,"about_ca_topic_score_gemma":0.004899204,"teacher_disagreement_score":0.005518148,"about_ca_system_score_codex":0.00040797508,"about_ca_system_score_gemma":0.0010972662,"threshold_uncertainty_score":0.018460035},"labels":[],"label_agreement":null},{"id":"W2902078840","doi":"10.1128/jcm.01338-18","title":"A Novel Sensitive Immunoassay Targeting the 5-Methylthio- <scp>d</scp> -Xylofuranose–Lipoarabinomannan Epitope Meets the WHO's Performance Target for Tuberculosis Diagnosis","year":2018,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"ImmunoPrecise (Canada); Alberta Glycomics Centre; University of Alberta","funders":"National Institutes of Health; Ministerie van Buitenlandse Zaken; Global Health Innovative Technology Fund; Alberta Glycomics Centre; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation","keywords":"Lipoarabinomannan; Epitope; Mycobacterium tuberculosis; Tuberculosis; Immunoassay; Medicine; Sputum; Antibody; Antigen; Urine; Virology; Immunology; Internal medicine; Pathology","score_opus":0.04972153259967607,"score_gpt":0.3749028503457262,"score_spread":0.3251813177460501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902078840","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5051927,0.008760126,0.47147852,0.0010857983,0.00071001664,0.0008393788,0.0012657248,0.0024794643,0.00818818],"genre_scores_gemma":[0.7236399,0.0015964806,0.26833647,0.0006204805,0.00020853837,0.00027616415,0.0010716266,0.000041880932,0.0042085177],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981694,0.0006624695,0.00008309331,0.0003626838,0.00056549674,0.0001568703],"domain_scores_gemma":[0.9991059,0.00031740856,0.0001962859,0.0000793507,0.00017633001,0.00012482426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016605707,0.0009835009,0.0006661494,0.0009312779,0.00029690558,0.0006792027,0.0011514714,0.0015998755,0.0015536175],"category_scores_gemma":[0.0015350897,0.00030592995,0.00048770788,0.00041087868,0.00058537954,0.0007572774,0.0005299157,0.0013501175,0.0009826383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016398115,0.00013242556,0.0017437967,0.00012240917,0.000025232825,0.00009453835,0.000023573224,0.0001492503,0.98080355,0.00020714379,0.00028700626,0.01624703],"study_design_scores_gemma":[0.00009461006,0.0029496537,0.00987924,0.00004226191,0.00010622475,0.0038449056,0.00009245527,0.012910734,0.9611336,0.00032100198,0.008549104,0.00007617648],"about_ca_topic_score_codex":0.00057059,"about_ca_topic_score_gemma":0.0011291218,"teacher_disagreement_score":0.0016605707,"about_ca_system_score_codex":0.0005053231,"about_ca_system_score_gemma":0.0005042319,"threshold_uncertainty_score":0.008782029},"labels":[],"label_agreement":null},{"id":"W2902306742","doi":"10.1128/jcm.01637-18","title":"Industry Perspectives on the WHO Essential Diagnostics List","year":2018,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Pharmaceutical Economics and Policy","field":"Economics, Econometrics and Finance","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Outbreak; Communicable disease; Healthcare system; Medicine; Low and middle income countries; Global health; Intensive care medicine; Health care; Environmental health; Business; Developing country; Public health; Economic growth; Virology; Pathology","score_opus":0.13043208718089475,"score_gpt":0.383639576013895,"score_spread":0.25320748883300026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902306742","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019353215,0.0013780345,0.000114464834,0.97973484,0.008312648,0.000007974508,0.00004484632,0.000018462433,0.010195199],"genre_scores_gemma":[0.0034151594,0.0014751061,0.00023419368,0.9656172,0.019602,0.000027664491,0.00006504918,0.000025311328,0.009538331],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9910415,0.0019271944,0.0007306,0.00079005654,0.0036106906,0.001900034],"domain_scores_gemma":[0.97936064,0.010850069,0.0009369391,0.00072707847,0.0043151304,0.0038101203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00882777,0.0007288376,0.00068512204,0.0009954395,0.0034963058,0.0073108785,0.0021642775,0.04980645,0.025123669],"category_scores_gemma":[0.03093473,0.0004793169,0.0011320836,0.0012090869,0.004069289,0.0060276026,0.0038832254,0.036811184,0.012529165],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017068045,0.00002328562,0.00026441342,0.00004708766,0.0000029250848,0.0004647523,0.00010388842,0.00004157608,0.00015511292,0.022040665,0.96450716,0.012331945],"study_design_scores_gemma":[0.000018919773,0.000020563322,0.0003057092,0.00018974043,0.0000034282273,0.00033799093,0.00017072266,0.00008867828,0.00008561918,0.008883835,0.98987997,0.000014731221],"about_ca_topic_score_codex":0.005850737,"about_ca_topic_score_gemma":0.01267885,"teacher_disagreement_score":0.04980645,"about_ca_system_score_codex":0.0063103987,"about_ca_system_score_gemma":0.0102510005,"threshold_uncertainty_score":0.08404702},"labels":[],"label_agreement":null},{"id":"W2911917411","doi":"10.1128/jcm.01724-18","title":"Multilocus Variable-Number Tandem-Repeat Analysis of Clostridioides difficile Clusters in Ribotype 027 Isolates and Lack of Association with Clinical Outcomes","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital; North York General Hospital; Sunnybrook Health Science Centre; Mount Sinai Hospital; Health Sciences Centre; Centre intégré universitaire de santé et de services sociaux de l'Est-de-l'Île-de-Montréal; Toronto East General Hospital; Toronto General Hospital; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Université de Sherbrooke","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Clostridioides; Clostridium difficile; Variable number tandem repeat; Biology; Multilocus sequence typing; Genetics; Microbiology; Genotype; Antibiotics; Gene","score_opus":0.0499647571877126,"score_gpt":0.4014306001139633,"score_spread":0.3514658429262507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911917411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931896,0.000041587067,0.000043681157,0.000017624714,0.0000028243303,0.0000026479497,0.00018751207,0.0000018268597,0.00038328595],"genre_scores_gemma":[0.99968946,0.000009184007,0.00003127183,0.0000075523317,0.000001995383,0.0000014736089,0.00016947731,6.1616385e-7,0.00008887283],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968493,0.00005941911,0.000025072499,0.00005863732,0.00007532304,0.00009674992],"domain_scores_gemma":[0.99877363,0.00023855636,0.00040627355,0.000073302435,0.00020087232,0.00030737466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003376131,0.00018408535,0.00014455867,0.00042912213,0.0002876047,0.00033759463,0.00019415298,0.0002574464,0.001524406],"category_scores_gemma":[0.0015497649,0.000078931764,0.00016498567,0.00037044077,0.00020479082,0.00008681987,0.00017909643,0.00028237575,0.00016726904],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021600218,0.000029726867,0.9961991,0.0000066104294,0.00002377299,0.00020013281,0.000053735566,0.000034938563,0.0021257636,0.000020972027,0.00008865414,0.0010006288],"study_design_scores_gemma":[0.000003873612,0.00010891517,0.9989293,0.000003873797,0.000010694009,0.00033739847,0.00011181929,0.0001540527,0.00023520832,0.00001135966,0.000091552436,0.0000018890886],"about_ca_topic_score_codex":0.028222693,"about_ca_topic_score_gemma":0.03741071,"teacher_disagreement_score":0.028222693,"about_ca_system_score_codex":0.00031975337,"about_ca_system_score_gemma":0.0004360315,"threshold_uncertainty_score":0.05611682},"labels":[],"label_agreement":null},{"id":"W2913225937","doi":"10.1128/jcm.01828-18","title":"Simultaneous Detection and Differentiation between Wild-Type and Vaccine Measles Viruses by a Multiplex Real-Time Reverse Transcription-PCR Assay","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; University of Calgary; University of Alberta; Provincial Laboratory of Public Health","funders":"","keywords":"Virology; Measles virus; Measles; Biology; Multiplex; Outbreak; Morbillivirus; Paramyxoviridae; Mononegavirales; Reverse transcription polymerase chain reaction; Genotype; Real-time polymerase chain reaction; Virus; Multiplex polymerase chain reaction; Microbiology; Viral disease; Polymerase chain reaction; Gene; Vaccination; Genetics; Gene expression","score_opus":0.02854349366845687,"score_gpt":0.3312427827506738,"score_spread":0.30269928908221694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913225937","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3226613,0.0029953832,0.6598472,0.00037654993,0.00072226976,0.0018623365,0.003056286,0.003626777,0.004851924],"genre_scores_gemma":[0.23070595,0.0013081457,0.75485283,0.0003985915,0.00018756621,0.0028260718,0.003104028,0.00017175771,0.006445112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.992401,0.0019860456,0.00068849034,0.0023328117,0.0021704377,0.0004212624],"domain_scores_gemma":[0.99627054,0.0018081609,0.00059628586,0.00035972314,0.0008339291,0.00013127312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0040815324,0.0020459937,0.0015033124,0.0024069976,0.00039918476,0.0014720752,0.0013635331,0.0014652099,0.0016592757],"category_scores_gemma":[0.0049511655,0.0012820434,0.0009843174,0.0011643266,0.0009359296,0.0011354279,0.0007765723,0.0017119552,0.0016093005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035513597,0.00024304171,0.0025676906,0.00021155739,0.000044185817,0.00009516407,0.00022063451,0.0006406784,0.9801829,0.0005177769,0.0003214116,0.014599861],"study_design_scores_gemma":[0.00006175513,0.0010806867,0.0044792667,0.00006498966,0.00011084071,0.00063870585,0.0001291509,0.026330972,0.9600053,0.0006184705,0.0063940617,0.00008569658],"about_ca_topic_score_codex":0.00031556323,"about_ca_topic_score_gemma":0.0007482151,"teacher_disagreement_score":0.0040815324,"about_ca_system_score_codex":0.000592619,"about_ca_system_score_gemma":0.0006797363,"threshold_uncertainty_score":0.021585464},"labels":[],"label_agreement":null},{"id":"W2916228384","doi":"10.1128/jcm.01739-18","title":"Reagent-Free Identification of Clinical Yeasts by Use of Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University","funders":"Centers for Disease Control and Prevention","keywords":"Attenuated total reflection; Infrared; Fourier transform spectroscopy; Fourier transform; Reagent; Fourier transform infrared spectroscopy; Infrared spectroscopy; Spectroscopy; Chemistry; Analytical Chemistry (journal); Optics; Chromatography; Physics; Organic chemistry","score_opus":0.03747119526241487,"score_gpt":0.4148856694454423,"score_spread":0.3774144741830274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916228384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8360594,0.006074351,0.150153,0.0002973785,0.00010617574,0.0005689145,0.0022929816,0.0010824932,0.003365335],"genre_scores_gemma":[0.7597546,0.0052222367,0.22877976,0.00025065453,0.00006433959,0.00035253525,0.0042166817,0.00013400306,0.0012251856],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954352,0.00089562073,0.0005587712,0.0007012194,0.0022694,0.00013980061],"domain_scores_gemma":[0.9974371,0.00075437076,0.0005770881,0.00044094346,0.00070195086,0.00008846532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002883793,0.00081376155,0.0009209456,0.002561765,0.00035547558,0.00086497737,0.00091453263,0.0005796388,0.0007060314],"category_scores_gemma":[0.0051296144,0.0002647654,0.00044047335,0.0016458334,0.00046284395,0.00084033783,0.00076977955,0.000531777,0.0009037796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041550523,0.00022827926,0.017674524,0.00027152585,0.000051864972,0.00034523715,0.00020920091,0.00052137655,0.918368,0.00015155006,0.00025324084,0.061509747],"study_design_scores_gemma":[0.000038452443,0.0017811201,0.05498712,0.00009878366,0.00019152122,0.003878009,0.00035388832,0.005134324,0.92445356,0.00026281635,0.008736245,0.000084109044],"about_ca_topic_score_codex":0.0008536169,"about_ca_topic_score_gemma":0.00101744,"teacher_disagreement_score":0.002883793,"about_ca_system_score_codex":0.00017099941,"about_ca_system_score_gemma":0.00050532987,"threshold_uncertainty_score":0.01525116},"labels":[],"label_agreement":null},{"id":"W2916402325","doi":"10.1128/jcm.00371-12","title":"Answer to October 2012 Photo Quiz","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Computational biology; Virology; Biology","score_opus":0.1520151898217177,"score_gpt":0.5085463224546096,"score_spread":0.35653113263289193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916402325","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012364963,0.0050023734,0.0010710355,0.2536332,0.16616248,0.00081912294,0.005083616,0.0040194816,0.5629721],"genre_scores_gemma":[0.0023754467,0.0010746145,0.00034479398,0.05703916,0.010827714,0.00014766125,0.000961854,0.00033298612,0.9268959],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9996537,0.000044720233,0.000020634248,0.000040972598,0.000164128,0.00007594446],"domain_scores_gemma":[0.9982455,0.00024748358,0.00006650382,0.000060344875,0.0008928768,0.00048727947],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00042397974,0.0008875339,0.00078917376,0.000751658,0.0012007459,0.0019572396,0.0008204295,0.00493322,0.7183165],"category_scores_gemma":[0.0050104745,0.00027617265,0.00082733977,0.00027129866,0.0003734893,0.0017469532,0.0015276617,0.004294202,0.44644135],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003085966,0.000016546886,0.000031745807,0.000025821468,8.078945e-7,0.000056513036,0.0000043479167,0.0000070692677,0.000034264238,0.0001002299,0.99487203,0.004819625],"study_design_scores_gemma":[0.000048031798,0.000046200756,0.00048341532,0.000093232295,0.0000033284412,0.00022480675,0.00006191756,0.00003691752,0.000096868425,0.00044647913,0.9984469,0.000012133598],"about_ca_topic_score_codex":0.0035178629,"about_ca_topic_score_gemma":0.0061377226,"teacher_disagreement_score":0.2816835,"about_ca_system_score_codex":0.0007596336,"about_ca_system_score_gemma":0.0005841817,"threshold_uncertainty_score":0.40178728},"labels":[],"label_agreement":null},{"id":"W2916478543","doi":"10.1128/jcm.01294-17","title":"Answer to November 2018 Photo Quiz","year":2018,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Medicine","score_opus":0.03343369439118767,"score_gpt":0.3817873578633938,"score_spread":0.34835366347220614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916478543","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000033600467,0.0018064496,0.00010455725,0.06775417,0.92184925,0.000024224508,0.00006791282,0.00011984279,0.008240042],"genre_scores_gemma":[0.0006383236,0.0019304145,0.00013560393,0.065537,0.83651596,0.00004303436,0.00009235592,0.000104126724,0.09500318],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974362,0.00050395203,0.00020235126,0.00022641507,0.0013636254,0.00026745824],"domain_scores_gemma":[0.9895902,0.0030260943,0.0006532397,0.00034481898,0.0041343193,0.0022513946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034272792,0.0020573619,0.0017607546,0.002478829,0.0027400022,0.005961343,0.001792818,0.012586496,0.1161794],"category_scores_gemma":[0.022220248,0.00081179896,0.0015677267,0.00066830986,0.0012986845,0.0026616608,0.0020888466,0.012986415,0.07064875],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000123270665,0.0000053824215,0.000010657592,0.000022287657,0.0000017308228,0.000045147164,0.0000021166436,0.000004793369,0.000015532221,0.000076862394,0.9977012,0.002101844],"study_design_scores_gemma":[0.000052197982,0.000018086821,0.0002051638,0.00015435132,0.000011908269,0.00014905045,0.000025118321,0.000060618488,0.000056195906,0.0005923327,0.99866223,0.000012769446],"about_ca_topic_score_codex":0.0017986457,"about_ca_topic_score_gemma":0.0063545494,"teacher_disagreement_score":0.1161794,"about_ca_system_score_codex":0.002308312,"about_ca_system_score_gemma":0.0015895579,"threshold_uncertainty_score":0.38865882},"labels":[],"label_agreement":null},{"id":"W2922252877","doi":"10.1128/jcm.00196-19","title":"To Lump or To Split: Does Strain Lineage for Clostridioides difficile Matter?","year":2019,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Clostridioides; Strain (injury); Lineage (genetic); Clostridium difficile; Biology; Microbiology; Genetics; Anatomy; Gene; Antibiotics","score_opus":0.0821281303913627,"score_gpt":0.4184751715296552,"score_spread":0.3363470411382925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2922252877","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.52175164,0.043250952,0.002592635,0.41231048,0.007102043,0.000066652705,0.001443144,0.000090389905,0.011392105],"genre_scores_gemma":[0.91398823,0.015325242,0.0013824868,0.06085397,0.005683411,0.000011605579,0.00053127453,0.00011066325,0.0021130887],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981698,0.00048727155,0.00016610263,0.00049688714,0.0003222841,0.00035765997],"domain_scores_gemma":[0.9904745,0.0038682772,0.0022611907,0.00054305483,0.0016878974,0.0011650217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006484487,0.00052860635,0.0006872621,0.0010070014,0.0015105128,0.003995009,0.0014839859,0.0033080822,0.00441066],"category_scores_gemma":[0.026478939,0.00023496011,0.00084044563,0.001587965,0.0032358062,0.0032639385,0.00082538376,0.0033433866,0.0009822788],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001920124,0.000106930995,0.8225972,0.00032111822,0.0007342748,0.0011394176,0.0025848828,0.00017298645,0.0013914993,0.0028951787,0.056165226,0.1099711],"study_design_scores_gemma":[0.00017083931,0.00050786766,0.8869201,0.0019168608,0.0014736599,0.0024780359,0.02855371,0.0022681938,0.0010573895,0.02319344,0.051271755,0.00018817594],"about_ca_topic_score_codex":0.05846866,"about_ca_topic_score_gemma":0.13118441,"teacher_disagreement_score":0.05846866,"about_ca_system_score_codex":0.0017416005,"about_ca_system_score_gemma":0.003929061,"threshold_uncertainty_score":0.116256714},"labels":[],"label_agreement":null},{"id":"W2923562511","doi":"10.1128/jcm.00404-19","title":"Triazole Antifungal Susceptibility Patterns among <i>Aspergillus</i> Species in Québec, Canada","year":2019,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; Institute of Infection and Immunity; McGill University","funders":"Fonds de Recherche du Québec - Santé; Gilead Sciences","keywords":"Aspergillosis; Aspergillus; Antifungal; Fungi imperfecti; Mortality rate; Biology; Mycosis; Microbiology; Medicine; Internal medicine; Immunology","score_opus":0.03757999891162578,"score_gpt":0.3159763533084433,"score_spread":0.27839635439681754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2923562511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9598984,0.0027014536,0.0003020147,0.012224104,0.0002122978,0.0001365238,0.0034079202,0.000036512098,0.021080863],"genre_scores_gemma":[0.99047524,0.0011002183,0.0003048772,0.004239226,0.000090014335,0.000019728659,0.0005715273,0.00001362842,0.0031855172],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99950933,0.000040488096,0.000055881075,0.00007952702,0.0001409402,0.00017386275],"domain_scores_gemma":[0.9986212,0.000104067076,0.0001575195,0.000023943534,0.00074523163,0.00034807515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030875075,0.00032970856,0.00028564673,0.0010145719,0.0026398646,0.0007768698,0.0008427041,0.00088597205,0.0027078784],"category_scores_gemma":[0.001103855,0.00015482196,0.00024006102,0.0018188857,0.00060659205,0.00030369408,0.0002860596,0.0008427471,0.0003750163],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013325282,0.00016873,0.95642,0.00008301488,0.000041137027,0.0049330243,0.0018264668,0.00021711485,0.0017727836,0.0003837083,0.017592177,0.01642861],"study_design_scores_gemma":[0.000025086852,0.00010492835,0.98316574,0.00022033112,0.000040397084,0.0028679923,0.00419243,0.0006542393,0.00027741893,0.00009132537,0.008324334,0.000035772362],"about_ca_topic_score_codex":0.9889931,"about_ca_topic_score_gemma":0.9926938,"teacher_disagreement_score":0.017833197,"about_ca_system_score_codex":0.017833197,"about_ca_system_score_gemma":0.0141071,"threshold_uncertainty_score":0.12938952},"labels":[],"label_agreement":null},{"id":"W2924121833","doi":"10.1128/jcm.01780-18","title":"Comparing Patient Risk Factor-, Sequence Type-, and Resistance Locus Identification-Based Approaches for Predicting Antibiotic Resistance in Escherichia coli Bloodstream Infections","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Antibiotic resistance; Antibiotics; Biology; Locus (genetics); Escherichia coli; Microbiology; Gene; Genetics","score_opus":0.0442222776083191,"score_gpt":0.31442799124709253,"score_spread":0.27020571363877344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2924121833","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99373686,0.0009570102,0.004031062,0.00012880504,0.000059745806,0.000026426089,0.0001648922,0.000029830386,0.00086538313],"genre_scores_gemma":[0.996856,0.00016690308,0.0025204269,0.000046301986,0.000025085998,0.000014961488,0.00016878755,0.000004748418,0.00019674281],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9970956,0.0019134302,0.0002407676,0.00029745465,0.00031367413,0.0001390334],"domain_scores_gemma":[0.9918358,0.0058649485,0.00058123434,0.00040116243,0.00067337934,0.0006435365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0063437014,0.00066608784,0.00055844855,0.00091714656,0.0002045067,0.0009606594,0.00034826229,0.0008859176,0.001332447],"category_scores_gemma":[0.012653203,0.00017491436,0.00058067916,0.00045660615,0.0002060962,0.00089814427,0.0005842157,0.0008033579,0.0005217203],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039809295,0.0003137929,0.9582054,0.00006300517,0.00058629096,0.000046520945,0.00008297131,0.0019978418,0.0018149151,0.0001127959,0.000306951,0.032488775],"study_design_scores_gemma":[0.00030680327,0.006951817,0.87777907,0.00010529439,0.0009645716,0.001331769,0.00038838384,0.103148066,0.0057211905,0.0016227432,0.001603931,0.000076432254],"about_ca_topic_score_codex":0.00033742664,"about_ca_topic_score_gemma":0.000938281,"teacher_disagreement_score":0.0063437014,"about_ca_system_score_codex":0.00021964761,"about_ca_system_score_gemma":0.0003282721,"threshold_uncertainty_score":0.03354913},"labels":[],"label_agreement":null},{"id":"W2926312960","doi":"10.1128/jcm.02019-18","title":"The Pseudomonas aeruginosa Population among Cystic Fibrosis Patients in Quebec, Canada: a Disease Hot Spot without Known Epidemic Isolates","year":2019,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University; Armand Frappier Museum; Cégep de l'Abitibi Témiscamingue; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Sherbrooke; Université Laval; Université de Montréal; Institut National de la Recherche Scientifique; Centre de Santé et de Services Sociaux de Chicoutimi","funders":"Cystic Fibrosis Canada","keywords":"Cystic fibrosis; Pseudomonas aeruginosa; Population; Medicine; Demography; Microbiology; Veterinary medicine; Biology; Internal medicine; Environmental health; Bacteria; Genetics","score_opus":0.019289993872038492,"score_gpt":0.3299886970998751,"score_spread":0.3106987032278366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2926312960","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2970758,0.013517151,0.000506121,0.6363935,0.0056578196,0.00021800933,0.0015049085,0.00014414373,0.04498255],"genre_scores_gemma":[0.8002277,0.008463469,0.0007547221,0.16641429,0.009231836,0.00007357124,0.00041336662,0.00006234699,0.014358741],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993992,0.00006247188,0.000053576423,0.00008845879,0.00015174015,0.00024450893],"domain_scores_gemma":[0.9981681,0.00027304207,0.00013688013,0.000046344147,0.000783437,0.0005922271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039319662,0.00040609587,0.00047179122,0.0007632239,0.0042947037,0.0014779902,0.00084903167,0.0043057,0.003181762],"category_scores_gemma":[0.002194352,0.00025156044,0.00028994321,0.0015331425,0.0014791926,0.00081214367,0.0003794278,0.002841354,0.00089334045],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005389102,0.00021609904,0.4399087,0.00036786584,0.00006089758,0.07937585,0.0039940756,0.00031451642,0.0041315113,0.0014986406,0.41157603,0.05801685],"study_design_scores_gemma":[0.00022047479,0.00040274378,0.7522053,0.0017595183,0.00019790752,0.07194859,0.022707429,0.002817839,0.0009569374,0.0030608638,0.14344788,0.00027440413],"about_ca_topic_score_codex":0.8715464,"about_ca_topic_score_gemma":0.90442616,"teacher_disagreement_score":0.12845361,"about_ca_system_score_codex":0.01571496,"about_ca_system_score_gemma":0.012603289,"threshold_uncertainty_score":0.25842017},"labels":[],"label_agreement":null},{"id":"W2927976810","doi":"10.1128/jcm.00213-19","title":"Pigment Visibility on Rectal Swabs Used To Detect Enteropathogens: a Prospective Cohort Study","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Alberta Children's Hospital; Women and Children’s Health Research Institute; University of Alberta; University of Calgary","funders":"Alberta Children's Hospital Research Institute; National Institutes of Health; Women and Children's Health Research Institute; Alberta Children's Hospital Foundation; National Institute of Diabetes and Digestive and Kidney Diseases; Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Medicine; Prospective cohort study; Confidence interval; Internal medicine; Diarrhea; Gastroenterology; Predictive value","score_opus":0.06018354344867923,"score_gpt":0.42945182500626644,"score_spread":0.36926828155758723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2927976810","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9993755,0.00012494408,0.00007434195,0.000011539509,0.0000042443626,0.000014805764,0.0002653935,0.000002242288,0.00012682624],"genre_scores_gemma":[0.9993781,0.00010977767,0.0001143428,0.00001866684,0.000006298638,0.00001321669,0.00029216506,0.000003850937,0.00006356765],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984469,0.00028819958,0.00014535004,0.00042082844,0.00038481638,0.0003140019],"domain_scores_gemma":[0.9961739,0.000532422,0.0017525336,0.00047755454,0.0005503894,0.00051309523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015280779,0.0007184962,0.00054343604,0.0010492922,0.0007416172,0.001211397,0.000716824,0.00069398765,0.00096256967],"category_scores_gemma":[0.0047359443,0.00091503083,0.0010611735,0.001457603,0.0006471484,0.0009220101,0.0008118586,0.0012580724,0.00023985328],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006355172,0.000014986959,0.9995307,0.0000034961945,0.000035946257,0.000031965013,0.000054274282,0.000008717339,0.00006247265,0.0000031931665,0.000022888242,0.00016798555],"study_design_scores_gemma":[0.0000061422334,0.00012936903,0.99919194,0.000006168144,0.000032041487,0.00023321206,0.00021078321,0.00008584246,0.000032424934,0.00000524035,0.000061930914,0.000004837647],"about_ca_topic_score_codex":0.026076201,"about_ca_topic_score_gemma":0.028223176,"teacher_disagreement_score":0.026076201,"about_ca_system_score_codex":0.0009445323,"about_ca_system_score_gemma":0.0008394307,"threshold_uncertainty_score":0.05184883},"labels":[],"label_agreement":null},{"id":"W2929887649","doi":"10.1128/jcm.01398-18","title":"Evaluation of the Bio-Rad Geenius HIV 1/2 Assay as Part of a Confirmatory HIV Testing Strategy for Quebec, Canada: Comparison with Western Blot and Inno-Lia Assays","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal; Université Laval; Institut National de Santé Publique du Québec","funders":"","keywords":"Human immunodeficiency virus (HIV); Western blot; Virology; Medicine; Biology; Biochemistry","score_opus":0.10290544988218255,"score_gpt":0.3766362336337181,"score_spread":0.2737307837515356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2929887649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9733715,0.0065078707,0.010535465,0.0006781172,0.0000628614,0.00033718033,0.0010730964,0.00030074618,0.007133137],"genre_scores_gemma":[0.9750695,0.0015060602,0.01977695,0.00030519677,0.000018672099,0.00008705509,0.0008753817,0.000030642146,0.0023304762],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99783045,0.00059979595,0.00010175281,0.00020478874,0.0010753663,0.00018794657],"domain_scores_gemma":[0.99689746,0.00078027573,0.00031238204,0.000092651855,0.001678884,0.0002383004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028687243,0.00086045574,0.00032851912,0.0011010251,0.000604315,0.00060117466,0.0011303083,0.0004243135,0.0014580959],"category_scores_gemma":[0.0040831356,0.00031904175,0.00030036253,0.0005827203,0.00055356795,0.0002957388,0.0002876853,0.00049160025,0.00031314202],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042379336,0.0005984771,0.64735043,0.0008579663,0.00042909852,0.0013944806,0.0015964032,0.006248163,0.1441017,0.0008824554,0.0042011216,0.18810183],"study_design_scores_gemma":[0.00040173592,0.0033403956,0.91236436,0.00022433596,0.00042020733,0.0029325467,0.00084831176,0.034080807,0.034113325,0.0001058037,0.010999275,0.00016890414],"about_ca_topic_score_codex":0.6866402,"about_ca_topic_score_gemma":0.8538139,"teacher_disagreement_score":0.3133598,"about_ca_system_score_codex":0.0046942374,"about_ca_system_score_gemma":0.0057277316,"threshold_uncertainty_score":0.63041043},"labels":[],"label_agreement":null},{"id":"W2930734343","doi":"10.1128/jcm.02057-18","title":"Diagnostic Accuracy of Stool Xpert MTB/RIF for Detection of Pulmonary Tuberculosis in Children: a Systematic Review and Meta-analysis","year":2019,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; BC Centre for Disease Control; University of British Columbia; McGill University","funders":"Fonds de Recherche du Québec - Santé","keywords":"Pulmonary tuberculosis; Medicine; Tuberculosis; Nucleic Acid Amplification Tests; Meta-analysis; Diagnostic test; Diagnostic accuracy; Mycobacterium tuberculosis; Virology; Internal medicine; Pathology; Pediatrics","score_opus":0.17109512966932833,"score_gpt":0.48493414710234317,"score_spread":0.31383901743301484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2930734343","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0027478114,0.9957094,0.00024581814,0.00011725678,0.000074867334,0.0002133716,0.00062688853,0.00001814006,0.00024631235],"genre_scores_gemma":[0.06157678,0.9349295,0.001152205,0.00056564953,0.00010909311,0.00062727166,0.00074891956,0.000018712357,0.000271912],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9962915,0.0013478214,0.0013793368,0.00038332838,0.00043058814,0.00016741338],"domain_scores_gemma":[0.9909904,0.006715343,0.0013049386,0.000186332,0.00068999326,0.00011293613],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0053964555,0.002060809,0.012517348,0.005628125,0.0005592822,0.0023770968,0.0015142261,0.0016799306,0.0040699425],"category_scores_gemma":[0.017223693,0.0012362548,0.022308301,0.006174941,0.0005294679,0.0013546178,0.0011952411,0.0014342688,0.00043801387],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015983803,0.00002692589,0.0026864477,0.73587483,0.23356898,0.00014913824,0.00007763185,0.0002742031,0.00030179607,0.000115337236,0.0011414561,0.024184804],"study_design_scores_gemma":[0.0006713806,0.0002151276,0.0043395692,0.07144718,0.91871244,0.00017474861,0.00006397592,0.000106517815,0.00018364338,0.00016801129,0.0038911933,0.00002616535],"about_ca_topic_score_codex":0.0072506587,"about_ca_topic_score_gemma":0.018914476,"teacher_disagreement_score":0.012517348,"about_ca_system_score_codex":0.002417319,"about_ca_system_score_gemma":0.0031236766,"threshold_uncertainty_score":0.028539538},"labels":[],"label_agreement":null},{"id":"W2937866817","doi":"10.1128/jcm.00205-19","title":"Comparative Evaluation of Enteric Bacterial Culture and a Molecular Multiplex Syndromic Panel in Children with Acute Gastroenteritis","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; Calgary Laboratory Services; Provincial Laboratory of Public Health; Women and Children’s Health Research Institute; University of Calgary; University of Alberta","funders":"Alberta Children's Hospital Research Institute; National Institutes of Health; National Institute of Diabetes and Digestive and Kidney Diseases; Alberta Innovates; Women and Children's Health Research Institute; Alberta Children's Hospital Foundation; Alberta Innovates - Health Solutions; Alberta Health Services; International Business Machines Corporation","keywords":"Multiplex; Enteric bacteria; Acute gastroenteritis; Microbiology; Pathogen; Enteric virus; Medicine; Immunology; Biology; Virology; Bioinformatics; Genetics; Gene; Escherichia coli","score_opus":0.06460798402252696,"score_gpt":0.4049225606878832,"score_spread":0.34031457666535625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2937866817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99862087,0.000391517,0.00027894918,0.000026969123,0.000011020666,0.000008444819,0.00020447868,0.00001491517,0.00044267758],"genre_scores_gemma":[0.999015,0.00012364866,0.00050984236,0.000025125612,0.000009703596,0.000011652313,0.00023754641,0.0000049239065,0.00006259764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9972421,0.0011704208,0.00027297222,0.00039191963,0.0006311556,0.00029148557],"domain_scores_gemma":[0.99692035,0.0013413863,0.0006480538,0.00011919835,0.00058595714,0.000385078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001854862,0.00046058284,0.0005778821,0.0014358513,0.00025814446,0.00086629874,0.00033384006,0.0005151898,0.0007235655],"category_scores_gemma":[0.00832626,0.00031687497,0.00032798116,0.0009028251,0.00045105175,0.0005558944,0.0007337197,0.00058431237,0.00024664073],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012182267,0.00006578449,0.9870424,0.000050740786,0.00006199065,0.00047076354,0.00033410225,0.00025880654,0.0049505155,0.00004976013,0.00015962301,0.0053372923],"study_design_scores_gemma":[0.000019510893,0.0013034805,0.9912363,0.00002728966,0.00007990933,0.0017407249,0.0006460528,0.00093641167,0.0036196795,0.000024319424,0.00035649858,0.000009871103],"about_ca_topic_score_codex":0.0021742708,"about_ca_topic_score_gemma":0.0019220994,"teacher_disagreement_score":0.0021742708,"about_ca_system_score_codex":0.0005921806,"about_ca_system_score_gemma":0.0003879949,"threshold_uncertainty_score":0.009809613},"labels":[],"label_agreement":null},{"id":"W2946350749","doi":"10.1128/jcm.00661-19","title":"Alternate Nucleic Acid Targets Can Be Used To Create a Composite Standard To Evaluate Clinical Performance of Nucleic Acid Amplification Tests","year":2019,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"","keywords":"Nucleic Acid Amplification Tests; Mycoplasma genitalium; Nucleic acid; Biology; Microbiology; Virology; Genetics","score_opus":0.087746146913737,"score_gpt":0.4113402652523305,"score_spread":0.3235941183385935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946350749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43766427,0.025257407,0.16584036,0.16835335,0.03079709,0.0013467327,0.0018794177,0.0038139306,0.16504745],"genre_scores_gemma":[0.81959665,0.0040067406,0.095866635,0.054316107,0.0062228767,0.0009833573,0.0010960717,0.00036732116,0.01754423],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9893935,0.0037412543,0.001413802,0.0009451262,0.004038869,0.00046748156],"domain_scores_gemma":[0.98731226,0.0072334493,0.0011171266,0.0009631064,0.0029103744,0.00046352675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006213108,0.00082700554,0.00062789203,0.0021041078,0.0005452127,0.0021312009,0.00078237674,0.004645864,0.0035748],"category_scores_gemma":[0.02447934,0.0003814188,0.00042635476,0.0007887949,0.0015099713,0.0011415532,0.0006803695,0.0028900402,0.004969254],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004091468,0.001528945,0.23704252,0.0008794445,0.00017700267,0.01706017,0.0018957326,0.0016418939,0.14471154,0.01291319,0.15162392,0.42643416],"study_design_scores_gemma":[0.00039133985,0.008389509,0.10495808,0.0011109497,0.00026143092,0.07962994,0.0024113704,0.022194766,0.38202962,0.026382295,0.37183136,0.00040925015],"about_ca_topic_score_codex":0.00044820044,"about_ca_topic_score_gemma":0.00087310723,"teacher_disagreement_score":0.006213108,"about_ca_system_score_codex":0.0013369024,"about_ca_system_score_gemma":0.00031753845,"threshold_uncertainty_score":0.03285849},"labels":[],"label_agreement":null},{"id":"W2948235187","doi":"10.1128/jcm.00296-19","title":"Calibration and Evaluation of Quantitative Antibody Titers for Varicella-Zoster Virus by Use of the BioPlex 2200","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Toronto; Dalhousie University; Public Health Ontario; Institute for Clinical Evaluative Sciences; Nova Scotia Health Authority; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Rubella; Virology; Measles; Medicine; Varicella zoster virus; Antibody; Rubella virus; Immunoassay; Measles virus; Poliovirus; Titer; Virus; Immunology; Vaccination","score_opus":0.13366043932824545,"score_gpt":0.4603733600928036,"score_spread":0.32671292076455816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2948235187","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.36003226,0.0023761652,0.6229447,0.0003272026,0.0004968859,0.0016053447,0.0011411109,0.0045326883,0.006543678],"genre_scores_gemma":[0.5363868,0.0015757158,0.45154577,0.00064680626,0.00008401657,0.0035273547,0.0017380826,0.00040816813,0.004087267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98311377,0.0052737957,0.0012449084,0.0029043092,0.0070219766,0.00044136844],"domain_scores_gemma":[0.99255764,0.0033256721,0.0010551858,0.0009782317,0.0019365121,0.00014681545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009148029,0.0020672833,0.00096330233,0.0023808877,0.00062335294,0.0015378329,0.0014251556,0.0018932015,0.0013803001],"category_scores_gemma":[0.014525228,0.0008436245,0.00078549,0.0017824603,0.001448705,0.0008956301,0.0010086275,0.0016996767,0.001234277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090134743,0.0010833017,0.014328011,0.0006047256,0.00024334328,0.00015596353,0.0009830134,0.005748198,0.9211395,0.0012917045,0.0014354824,0.0520855],"study_design_scores_gemma":[0.000047927784,0.0011623523,0.010195694,0.000053609147,0.000104777195,0.0005724556,0.00012255386,0.057386003,0.92504555,0.0005017204,0.0046876715,0.00011969607],"about_ca_topic_score_codex":0.0010840973,"about_ca_topic_score_gemma":0.0010246553,"teacher_disagreement_score":0.009148029,"about_ca_system_score_codex":0.00092647347,"about_ca_system_score_gemma":0.0010699257,"threshold_uncertainty_score":0.048380017},"labels":[],"label_agreement":null},{"id":"W2955994043","doi":"10.1128/jcm.00377-19","title":"Serotype and Genotype (Multilocus Sequence Type) of Streptococcus suis Isolates from the United States Serve as Predictors of Pathotype","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Serotype; Biology; Streptococcus suis; Microbiology; Genotype; Typing; Virology; Virulence; Genetics; Gene","score_opus":0.060221937410503516,"score_gpt":0.383718591155233,"score_spread":0.32349665374472947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2955994043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958162,0.0004716864,0.0003439271,0.00007453667,0.000019203744,0.0000115811345,0.0021064333,0.000011659129,0.001144828],"genre_scores_gemma":[0.99705195,0.00024305319,0.00065003417,0.00004973252,0.000010223011,0.000007054056,0.0016914281,0.0000033109336,0.00029305177],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996449,0.00011367055,0.000050416373,0.00004527167,0.000092104405,0.000053680953],"domain_scores_gemma":[0.99902976,0.00020061672,0.00044528762,0.00005186398,0.00016534165,0.00010722807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039638602,0.00031702846,0.00021429418,0.0009827951,0.00018088489,0.00036928867,0.00008960275,0.00025389894,0.0015057492],"category_scores_gemma":[0.001561104,0.00012844297,0.0002329632,0.000811852,0.00012343023,0.00019183602,0.00022745221,0.0002369832,0.0003423522],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094294286,0.000033268705,0.9937774,0.0000117756,0.000032208376,0.000028286422,0.00002619047,0.00006584039,0.0010240219,0.000012367727,0.0002975104,0.0045969347],"study_design_scores_gemma":[0.000002807719,0.00011710612,0.99835557,0.000012720583,0.000023575742,0.00019753152,0.00011368655,0.00021550145,0.0006233396,0.000018574792,0.0003173187,0.0000023552582],"about_ca_topic_score_codex":0.004491957,"about_ca_topic_score_gemma":0.011658977,"teacher_disagreement_score":0.004491957,"about_ca_system_score_codex":0.00012658667,"about_ca_system_score_gemma":0.00017773107,"threshold_uncertainty_score":0.008931637},"labels":[],"label_agreement":null},{"id":"W2956144136","doi":"10.1128/jcm.00306-19","title":"Multicenter Clinical Validation of the Molecular BD Max Enteric Viral Panel for Detection of Enteric Pathogens","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); University of Calgary","funders":"BD Biosciences","keywords":"Sapovirus; Astrovirus; Norovirus; Rotavirus; Virology; Diarrhea; Population; Human bocavirus; Medicine; Biology; Microbiology; Gastroenterology; Internal medicine; Virus; Respiratory tract infections","score_opus":0.0727138549568334,"score_gpt":0.4084067534757179,"score_spread":0.3356928985188845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2956144136","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98201936,0.0012726247,0.010470526,0.0001157863,0.00008652778,0.0004668908,0.0022475438,0.00017924407,0.0031414034],"genre_scores_gemma":[0.9847341,0.0001943339,0.011092995,0.00017549808,0.000031495754,0.00036745917,0.0029105365,0.000037421152,0.00045617064],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99256706,0.0034442493,0.0005959205,0.0014579705,0.0016022366,0.00033262573],"domain_scores_gemma":[0.99514186,0.0011069485,0.0009137042,0.00065694883,0.0018434622,0.0003370128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0116202375,0.00078649365,0.00047518933,0.0009230979,0.00047961832,0.0008824857,0.00058398384,0.0005438876,0.0009713849],"category_scores_gemma":[0.009798073,0.00044427128,0.00028753176,0.00069313234,0.000473552,0.00047018752,0.0010053507,0.0005757704,0.0008863524],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005818778,0.0005984691,0.8785215,0.00024192526,0.00020082625,0.0001563273,0.0007446839,0.0011152712,0.068654336,0.00029222472,0.0024207032,0.041234985],"study_design_scores_gemma":[0.00041954813,0.009399813,0.9390124,0.00018206473,0.00018644326,0.0018064041,0.0004560743,0.006444732,0.031898692,0.00020651858,0.009943034,0.000044338583],"about_ca_topic_score_codex":0.0009940298,"about_ca_topic_score_gemma":0.00113034,"teacher_disagreement_score":0.0116202375,"about_ca_system_score_codex":0.00044173189,"about_ca_system_score_gemma":0.00062763446,"threshold_uncertainty_score":0.061454415},"labels":[],"label_agreement":null},{"id":"W2960603005","doi":"10.1128/jcm.00300-19","title":"Molecular Diagnosis of Vaginitis: Comparing Quantitative PCR and Microbiome Profiling Approaches to Current Microscopy Scoring","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; Calgary Laboratory Services; University of Calgary","funders":"Natural Environment Research Council; Sight Research UK; Calgary Laboratory Services","keywords":"Vaginitis; Microbiome; Profiling (computer programming); Biology; Computational biology; Medicine; Microbiology; Bioinformatics; Computer science; Genetics","score_opus":0.24612730880239816,"score_gpt":0.4325761319946267,"score_spread":0.18644882319222852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2960603005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.889819,0.022698719,0.070927516,0.0021104775,0.001293073,0.0006950159,0.0021569843,0.00057271216,0.009726562],"genre_scores_gemma":[0.9038897,0.0069046365,0.08191792,0.0016556318,0.0003934984,0.00036330093,0.0019385151,0.00012310082,0.0028137688],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99176896,0.0034361016,0.00037632475,0.0015464041,0.0024470072,0.00042522044],"domain_scores_gemma":[0.9939938,0.0027700448,0.0011365081,0.00034509058,0.001471559,0.00028301906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00797432,0.00081855623,0.0010003475,0.0027704781,0.00036466584,0.0029322975,0.00096218876,0.0013673531,0.0013051311],"category_scores_gemma":[0.010200674,0.000532847,0.00066661177,0.0014529327,0.0008616261,0.0013750709,0.00091532065,0.0011608525,0.0008533269],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0117886625,0.0020745695,0.4915635,0.002437136,0.001925304,0.0002613096,0.0010425553,0.0031900185,0.15727404,0.0021059695,0.0032766082,0.32306036],"study_design_scores_gemma":[0.00039936756,0.016272768,0.7889932,0.0011273272,0.0015204896,0.0040969774,0.0038585502,0.0595526,0.10475636,0.0038325961,0.015233049,0.00035682268],"about_ca_topic_score_codex":0.0010566657,"about_ca_topic_score_gemma":0.0020069068,"teacher_disagreement_score":0.00797432,"about_ca_system_score_codex":0.00074937503,"about_ca_system_score_gemma":0.00044096657,"threshold_uncertainty_score":0.04217279},"labels":[],"label_agreement":null},{"id":"W2960708060","doi":"10.1128/jcm.00597-19","title":"Rapid and Easy Detection of Carbapenemases in <i>Enterobacterales</i> in the Routine Laboratory Using the New GenePOC Carba/Revogene Carba C Assay","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"GenePOC; Deutsches Zentrum für Infektionsforschung","keywords":"Biology; Enterobacteriaceae Infections; Microbiology; Computational biology; Enterobacteriaceae; Biochemistry; Escherichia coli; Gene","score_opus":0.020543948216915027,"score_gpt":0.30492900746484564,"score_spread":0.2843850592479306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2960708060","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95445687,0.0026623819,0.03559489,0.00021774201,0.00010115375,0.0009724248,0.001477746,0.0008819906,0.0036348265],"genre_scores_gemma":[0.9263367,0.0008170749,0.06844302,0.00023309673,0.00009048917,0.00040833178,0.0025659062,0.00007869457,0.0010267409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9925748,0.0020672663,0.0006627923,0.0021235612,0.0022102,0.00036144737],"domain_scores_gemma":[0.99673706,0.0009776712,0.00084070134,0.00035085206,0.00076937466,0.00032440992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022982606,0.0011466269,0.0006574713,0.001988359,0.0002438175,0.0008756354,0.0009380991,0.0010782168,0.0008257539],"category_scores_gemma":[0.0038289789,0.00076885725,0.0005008056,0.0008448166,0.0009005724,0.00076894485,0.0012570807,0.000834318,0.00070120144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002695187,0.00066652725,0.25718075,0.00050940656,0.00018128943,0.0009667437,0.00042634213,0.0003153246,0.65782666,0.00011644047,0.0009418038,0.07817349],"study_design_scores_gemma":[0.00045945894,0.0075822985,0.61628145,0.00013218922,0.0002594748,0.017724616,0.00034641405,0.004770135,0.34602833,0.00014661835,0.0060468107,0.00022226037],"about_ca_topic_score_codex":0.0019170665,"about_ca_topic_score_gemma":0.0023158654,"teacher_disagreement_score":0.0022982606,"about_ca_system_score_codex":0.0004100046,"about_ca_system_score_gemma":0.00033723094,"threshold_uncertainty_score":0.01215452},"labels":[],"label_agreement":null},{"id":"W2967573308","doi":"10.1128/jcm.00884-19","title":"Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Centre intégré universitaire de santé et de services sociaux de l'Est-de-l'Île-de-Montréal; Institut National de Santé Publique du Québec; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Hôpital Maisonneuve-Rosemont; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Candida auris; Biology; Microbiology; Clinical microbiology; Clade; Identification (biology); Yeast; Candida tropicalis; Antifungal; Genetics; Phylogenetics; Gene; Ecology","score_opus":0.040315647712168425,"score_gpt":0.3752044278056694,"score_spread":0.334888780093501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2967573308","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911152,0.0026516393,0.0029589299,0.00008484646,0.000059129598,0.00055326155,0.00069027697,0.000046034373,0.0018407622],"genre_scores_gemma":[0.992482,0.00064526004,0.004631824,0.00008634368,0.000044909102,0.00012275412,0.0014383349,0.00003251342,0.0005159976],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.985521,0.004593981,0.0022600906,0.0017609007,0.0052819746,0.0005820043],"domain_scores_gemma":[0.9920793,0.001776331,0.0012740424,0.00055607385,0.003819597,0.00049464905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0093171885,0.0009800387,0.0011294358,0.001862876,0.00042787078,0.0012426747,0.0008372504,0.00082697795,0.0012155755],"category_scores_gemma":[0.010094208,0.00030891417,0.0007410135,0.0012009889,0.00071099756,0.0009033026,0.001197661,0.0006257155,0.000769514],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020567844,0.0051112887,0.5912892,0.0012446815,0.00089598825,0.0021439411,0.0014832782,0.0018784463,0.26506642,0.00027512253,0.0012141395,0.108829744],"study_design_scores_gemma":[0.0007351266,0.045578726,0.7383739,0.00014114268,0.0015307004,0.010034462,0.0006597555,0.012512678,0.18089633,0.00010443239,0.009222426,0.00021043037],"about_ca_topic_score_codex":0.002162434,"about_ca_topic_score_gemma":0.0012629541,"teacher_disagreement_score":0.0093171885,"about_ca_system_score_codex":0.0006776694,"about_ca_system_score_gemma":0.0005105693,"threshold_uncertainty_score":0.049274623},"labels":[],"label_agreement":null},{"id":"W2971097100","doi":"10.1128/jcm.01281-19","title":"A Cost-Effective Method for Identifying <i>Enterobacterales</i> with OXA-181","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Calgary Laboratory Services","keywords":"Loop-mediated isothermal amplification; Bacteria; Confidence interval; Biology; Enterobacteriaceae; Indian subcontinent; Microbiology; Enzyme; Computational biology; Medicine; Genetics; Escherichia coli; Gene; Internal medicine; Biochemistry","score_opus":0.04535940769555661,"score_gpt":0.4097493129656658,"score_spread":0.36438990527010917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971097100","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.845351,0.0045429496,0.1259983,0.0017950424,0.0004718641,0.002012013,0.008816575,0.0013161058,0.009696197],"genre_scores_gemma":[0.759651,0.002124418,0.22249508,0.00034726041,0.00011346768,0.0007816593,0.006932701,0.000064733,0.0074896635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987463,0.00025776617,0.00010246396,0.00025596833,0.00056354806,0.00007396457],"domain_scores_gemma":[0.99939835,0.000115359595,0.00015748551,0.000053181404,0.00020816854,0.00006743769],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006556039,0.0009643216,0.0005179748,0.001724795,0.000351081,0.00066185987,0.00079937524,0.0010159774,0.0027921877],"category_scores_gemma":[0.0009493699,0.00039299426,0.00043979747,0.0008909421,0.00027433276,0.0004763058,0.0006242825,0.0004765459,0.0016575822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029612466,0.0003683497,0.03623999,0.0005209208,0.00007965779,0.00033358854,0.00010684213,0.0002823085,0.8520425,0.00015047683,0.0013186211,0.10826072],"study_design_scores_gemma":[0.00022054442,0.003400133,0.2314679,0.00022148383,0.0007676493,0.010775685,0.00081372075,0.008234262,0.71034163,0.0005219387,0.033050068,0.00018501803],"about_ca_topic_score_codex":0.0011016327,"about_ca_topic_score_gemma":0.0025556777,"teacher_disagreement_score":0.0027921877,"about_ca_system_score_codex":0.00027535498,"about_ca_system_score_gemma":0.00044330698,"threshold_uncertainty_score":0.009340763},"labels":[],"label_agreement":null},{"id":"W2973168848","doi":"10.1128/jcm.00962-19","title":"Evaluation of Anatomically Designed Flocked Rectal Swabs for Use with the BioFire FilmArray Gastrointestinal Panel for Detection of Enteric Pathogens in Children Admitted to Hospital with Severe Gastroenteritis","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; BC Children's Hospital","funders":"National Institute of Allergy and Infectious Diseases; Center for AIDS Research, University of Washington; Grand Challenges Canada; NIH Clinical Center; National Institutes of Health; BioFire Diagnostics; bioMérieux; University of Pennsylvania","keywords":"Medicine; Pathogen; Acute gastroenteritis; Internal medicine; Gastroenterology; Virology; Immunology","score_opus":0.04876157856292614,"score_gpt":0.34461377345378985,"score_spread":0.29585219489086373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2973168848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977252,0.00025328033,0.0012473668,0.000047998266,0.000020721156,0.0000990174,0.00022168219,0.00002130599,0.00036342477],"genre_scores_gemma":[0.9882895,0.0003692279,0.010333268,0.00012886267,0.000011207154,0.00007924288,0.00050790125,0.0000141603505,0.00026659187],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99858,0.0004971437,0.00013950994,0.00022362017,0.00043514586,0.0001246369],"domain_scores_gemma":[0.99836105,0.00056270894,0.00044789922,0.000084794294,0.00040228915,0.00014127011],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012620583,0.0006797137,0.00047010975,0.00067300064,0.00022636703,0.00052277837,0.00046943896,0.000410308,0.00068719033],"category_scores_gemma":[0.004247385,0.00029585048,0.00030841332,0.0004455345,0.00029633092,0.00039870932,0.0002785643,0.00029226314,0.00022375725],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017214039,0.0002801576,0.58187443,0.00035509255,0.00010816004,0.0012873407,0.0010826443,0.00048563365,0.39555025,0.000037530237,0.0002573634,0.016959982],"study_design_scores_gemma":[0.000052461943,0.0060620476,0.8985301,0.00009414824,0.00012704506,0.0032282886,0.0014402285,0.0018949672,0.08729253,0.00001831174,0.0012306685,0.00002920838],"about_ca_topic_score_codex":0.0046239775,"about_ca_topic_score_gemma":0.011861764,"teacher_disagreement_score":0.0046239775,"about_ca_system_score_codex":0.000322741,"about_ca_system_score_gemma":0.00037609666,"threshold_uncertainty_score":0.009194136},"labels":[],"label_agreement":null},{"id":"W2976461587","doi":"10.1128/jcm.01254-19","title":"Identification and Characterization of “ <i>Haemophilus quentini</i> ” Strains Causing Invasive Disease in Ontario, Canada (2016 to 2018)","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Public Health Ontario; University of Toronto","funders":"Wellcome Trust","keywords":"Haemophilus influenzae; Pasteurellaceae; Pathogen; Biology; Microbiology; Haemophilus; Human pathogen; Genitourinary system; Human disease; Disease; Bacteria; Medicine; Pathology; Antibiotics; Genetics","score_opus":0.02323614956710509,"score_gpt":0.2810333797176167,"score_spread":0.25779723015051165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2976461587","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9568922,0.00476478,0.0011745333,0.0009251278,0.0001679007,0.000601681,0.019241668,0.00006410872,0.016167948],"genre_scores_gemma":[0.96588147,0.00450992,0.002035547,0.0010815299,0.000059711896,0.00010510922,0.013622137,0.00003799097,0.012666598],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905413,0.00001909614,0.000046854642,0.00010866265,0.0004999697,0.0002713802],"domain_scores_gemma":[0.9981914,0.000030942992,0.0002118405,0.000029477113,0.0012597728,0.00027655094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036974595,0.0005659919,0.00034256882,0.0017932004,0.00231214,0.0012017459,0.0006958688,0.00042044374,0.0011522395],"category_scores_gemma":[0.0008859209,0.00028319756,0.00047426097,0.002566332,0.00066522,0.00027414004,0.0005657384,0.0005888419,0.00039075062],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063070306,0.00020477248,0.8345481,0.0004819757,0.000112557595,0.0031551626,0.0063213594,0.0006123667,0.08846726,0.0005494848,0.014746917,0.05016942],"study_design_scores_gemma":[0.000009428213,0.00010602372,0.97604275,0.00008016841,0.00003371537,0.000648832,0.0025388985,0.00018359219,0.002587922,0.00001574374,0.017732449,0.000020404854],"about_ca_topic_score_codex":0.9882393,"about_ca_topic_score_gemma":0.9906961,"teacher_disagreement_score":0.013645741,"about_ca_system_score_codex":0.013645741,"about_ca_system_score_gemma":0.022211656,"threshold_uncertainty_score":0.09900725},"labels":[],"label_agreement":null},{"id":"W2980361713","doi":"10.1128/jcm.01302-19","title":"Recovery of Nontuberculous Mycobacteria and Nocardiae Causing Skin/Soft Tissue Infections by Use of the Copan ESwab Collection and Transport System","year":2019,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"","keywords":"Nontuberculous mycobacteria; Soft tissue; Mycobacterium; Microbiology; Mycobacterium Infections; Medicine; Biology; Pathology; Tuberculosis","score_opus":0.030341419143423885,"score_gpt":0.31892302937465355,"score_spread":0.2885816102312297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980361713","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.108008415,0.013280946,0.0064489506,0.7705785,0.018891023,0.00038034783,0.00023257737,0.00033549895,0.08184382],"genre_scores_gemma":[0.49053538,0.016268605,0.006898752,0.41434816,0.02876235,0.00018777134,0.0003529965,0.00013746254,0.042508487],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9989937,0.00035987626,0.00015928042,0.000118310956,0.00022725528,0.00014163018],"domain_scores_gemma":[0.9989538,0.0004597705,0.00014901863,0.00009125291,0.00020295236,0.00014321227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006303774,0.0005576039,0.00033734125,0.00043257233,0.0010929707,0.00092291494,0.000646608,0.00507422,0.0041644126],"category_scores_gemma":[0.0059922584,0.00024677554,0.00051092834,0.00031255325,0.00088328356,0.0011814816,0.00080288615,0.004641685,0.0051646307],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003032281,0.00052075303,0.026314938,0.0005922429,0.00003713615,0.45590034,0.0018978162,0.00029318393,0.0111555485,0.004312635,0.3931442,0.10552805],"study_design_scores_gemma":[0.000093225106,0.0005690197,0.015322197,0.00092112686,0.000053017153,0.5217734,0.0018861592,0.0015905525,0.0061736354,0.00788996,0.44364238,0.00008545301],"about_ca_topic_score_codex":0.0021056803,"about_ca_topic_score_gemma":0.002013084,"teacher_disagreement_score":0.00507422,"about_ca_system_score_codex":0.0011325026,"about_ca_system_score_gemma":0.00079985417,"threshold_uncertainty_score":0.013931394},"labels":[],"label_agreement":null},{"id":"W2981845840","doi":"10.1128/jcm.01393-18","title":"Photo Quiz: A 59-Year-Old Male with Nodular Cutaneous Lesions","year":2019,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Cutaneous lymphoproliferative disorders research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Pathology; Medicine; Dermatology","score_opus":0.03205271212376983,"score_gpt":0.3904414033731558,"score_spread":0.358388691249386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981845840","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0133009115,0.03443107,0.0015412568,0.1517775,0.72764367,0.00019271654,0.0004165701,0.0004057123,0.07029057],"genre_scores_gemma":[0.08528141,0.02607801,0.00081197283,0.056736223,0.77568793,0.000043873406,0.00024464855,0.00011815052,0.054997776],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.999655,0.000059903345,0.000044516048,0.000066407134,0.00012587135,0.000048327514],"domain_scores_gemma":[0.9990061,0.0004451741,0.00005517003,0.000036672245,0.00026620753,0.00019079812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004515583,0.0018854782,0.0011561513,0.001039729,0.0010791842,0.0010511982,0.0008346531,0.0049023572,0.0081575215],"category_scores_gemma":[0.002346749,0.00046625413,0.0005498315,0.00029734094,0.00057635264,0.0014965271,0.0003917033,0.0048058536,0.004191443],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012824818,0.00010674248,0.0012606286,0.00037952428,0.000033805085,0.19590278,0.00013310034,0.00010875679,0.0010503364,0.00071548345,0.7883259,0.01185482],"study_design_scores_gemma":[0.00013801963,0.00019694261,0.006350381,0.000920069,0.000095883166,0.31834748,0.00053552736,0.00066328765,0.0010417599,0.0016581584,0.6699921,0.000060323233],"about_ca_topic_score_codex":0.0009744764,"about_ca_topic_score_gemma":0.0015172687,"teacher_disagreement_score":0.0081575215,"about_ca_system_score_codex":0.00066375866,"about_ca_system_score_gemma":0.00024738707,"threshold_uncertainty_score":0.027289629},"labels":[],"label_agreement":null},{"id":"W2982055339","doi":"10.1128/jcm.01394-18","title":"Answer to November 2019 Photo Quiz","year":2019,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Medicine","score_opus":0.035735578466846406,"score_gpt":0.4270900995163106,"score_spread":0.3913545210494642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982055339","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014413334,0.003390518,0.00016924708,0.12329371,0.81415564,0.00009167704,0.0003980259,0.00043105803,0.057925917],"genre_scores_gemma":[0.0017052407,0.0037521077,0.0001848898,0.12565796,0.45193633,0.00007806487,0.00046516236,0.00016875444,0.41605142],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994073,0.00009897193,0.000058873935,0.00006687815,0.0002946115,0.000073428164],"domain_scores_gemma":[0.9967878,0.0007818916,0.00015327406,0.000089731715,0.0014133357,0.00077395525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008505255,0.0013872888,0.0010549573,0.001360187,0.0015509983,0.0028921417,0.0011420246,0.0068073254,0.2698788],"category_scores_gemma":[0.008610247,0.0004639098,0.0008929222,0.00039809867,0.0006436909,0.0022805226,0.0010074808,0.007446194,0.18242969],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019231566,0.000007817379,0.000012774471,0.000031275627,0.0000014249787,0.000057728135,0.0000018579875,0.000005929524,0.00002123815,0.000073988296,0.99740726,0.0023595714],"study_design_scores_gemma":[0.000049564,0.000023986608,0.00025074746,0.0001566382,0.0000056949616,0.00021378686,0.000025980491,0.000045957302,0.00005024269,0.00047499625,0.9986915,0.000010940162],"about_ca_topic_score_codex":0.002062674,"about_ca_topic_score_gemma":0.0050847484,"teacher_disagreement_score":0.2698788,"about_ca_system_score_codex":0.0011347813,"about_ca_system_score_gemma":0.00059333286,"threshold_uncertainty_score":0.90283453},"labels":[],"label_agreement":null},{"id":"W2990972857","doi":"10.1128/jcm.01651-19","title":"Whole-Genome Sequencing of Corynebacterium diphtheriae Isolates Recovered from an Inner-City Population Demonstrates the Predominance of a Single Molecular Strain","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Corynebacterium diphtheriae; Whole genome sequencing; Biology; Population; Genome; Strain (injury); Corynebacterium; Microbiology; Genetics; Virology; Bacteria; Diphtheria; Gene; Medicine","score_opus":0.024100175618740068,"score_gpt":0.29355384512346694,"score_spread":0.2694536695047269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2990972857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98923606,0.00030450823,0.0008277819,0.000053893804,0.000007733352,0.000037075548,0.0076427134,0.000021580054,0.0018684843],"genre_scores_gemma":[0.9786235,0.00044406223,0.0035796708,0.00012107999,0.0000034060079,0.000031848238,0.014361769,0.000026684558,0.0028080884],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99971086,0.000017361963,0.000021067968,0.00011021049,0.0000772104,0.00006319869],"domain_scores_gemma":[0.99953794,0.000057140558,0.000069937145,0.00005984363,0.000190158,0.000084994535],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019566836,0.00031958087,0.0003231243,0.00078168,0.0007034484,0.000712574,0.00018694809,0.0003011014,0.001170423],"category_scores_gemma":[0.00063164515,0.00016096335,0.00025198556,0.0014641435,0.00025636255,0.00010505665,0.00042541916,0.00035657678,0.00040900486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039564056,0.00009354055,0.5900841,0.0002560457,0.00021100313,0.0007819486,0.0026928235,0.00071793905,0.36784735,0.00014609049,0.0013410832,0.035432424],"study_design_scores_gemma":[0.0000052959454,0.000058120248,0.9865558,0.00002480185,0.00003927999,0.00042945094,0.00082474196,0.00031576672,0.007059641,0.000030997377,0.0046484075,0.0000076044894],"about_ca_topic_score_codex":0.11450019,"about_ca_topic_score_gemma":0.2609633,"teacher_disagreement_score":0.11450019,"about_ca_system_score_codex":0.0005769212,"about_ca_system_score_gemma":0.0009962494,"threshold_uncertainty_score":0.22766745},"labels":[],"label_agreement":null},{"id":"W2991564224","doi":"10.1128/jcm.01510-19","title":"A Multicenter Study of the Revogene C. difficile System for Detection of the Toxin B Gene from Unformed Stool Specimens","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"GenePOC","keywords":"Clostridioides; Diarrhea; C difficile; Medicine; Clostridium difficile; Clostridium difficile toxin A; Internal medicine; Tertiary care; Multicenter study; Toxin; Emergency medicine; Microbiology; Biology; Antibiotics; Randomized controlled trial","score_opus":0.04449893794576948,"score_gpt":0.35007337703138675,"score_spread":0.30557443908561727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2991564224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839586,0.0002035756,0.0003309985,0.000066263674,0.000041696716,0.00027749166,0.00037314417,0.000014153687,0.00029684635],"genre_scores_gemma":[0.99533194,0.00015232082,0.0011683338,0.000365964,0.00009478294,0.0003466882,0.0017254598,0.000027711947,0.0007866381],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.996436,0.0017398968,0.00018101324,0.0007897836,0.0004828956,0.0003704984],"domain_scores_gemma":[0.99467754,0.0010855999,0.0010483763,0.0008486678,0.0010889221,0.0012510518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007631228,0.0016869209,0.0009374187,0.000865498,0.0010490208,0.0012976978,0.00081444194,0.0016049364,0.0015712468],"category_scores_gemma":[0.0058882823,0.0007974728,0.0011374961,0.0008398175,0.001002342,0.0009060346,0.0007832238,0.001523763,0.00088950305],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06913743,0.021491839,0.86219305,0.0001649138,0.0018559229,0.00085145474,0.0013285324,0.00023433994,0.023278665,0.00024105897,0.0014781841,0.01774452],"study_design_scores_gemma":[0.009851458,0.07358906,0.90834,0.00002846616,0.0009039075,0.0013017394,0.00051316695,0.00073830993,0.002170063,0.00008122188,0.0024071664,0.00007548995],"about_ca_topic_score_codex":0.0026352545,"about_ca_topic_score_gemma":0.0019790104,"teacher_disagreement_score":0.007631228,"about_ca_system_score_codex":0.00071540085,"about_ca_system_score_gemma":0.0009671868,"threshold_uncertainty_score":0.040358245},"labels":[],"label_agreement":null},{"id":"W2992191939","doi":"10.1128/jcm.01591-19","title":"Helicobacter pylori Infections in the Bronx, New York: Surveying Antibiotic Susceptibility and Strain Lineage by Whole-Genome Sequencing","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. John’s Health Sciences Centre","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Biology; 23S ribosomal RNA; Levofloxacin; Helicobacter pylori; Amoxicillin; Genetics; Antibiotic resistance; Microbiology; Genotype; Clarithromycin; Drug resistance; Antibiotics; Gene","score_opus":0.06230669363736073,"score_gpt":0.34000134516914876,"score_spread":0.277694651531788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992191939","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967152,0.0010391002,0.00018924214,0.00011079443,0.000009631878,0.000026582602,0.0009875514,0.0000043946475,0.0009174986],"genre_scores_gemma":[0.99064684,0.0029271927,0.001323673,0.00017732788,0.000023610144,0.000071149814,0.0025949017,0.00001840209,0.0022168853],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99985874,0.000029151872,0.000014880332,0.000032453474,0.000036679474,0.000028031818],"domain_scores_gemma":[0.9998211,0.000040361756,0.000041963343,0.000012047399,0.00003551533,0.000049038885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030835162,0.00019704575,0.00020090242,0.0008598882,0.00029644594,0.00037897192,0.00017643349,0.00021224869,0.0017487562],"category_scores_gemma":[0.00044136125,0.00019054899,0.00009358039,0.0009414285,0.00026254304,0.0002751141,0.00043133207,0.00033529417,0.00030317684],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033447257,0.00012049478,0.8926371,0.00015192681,0.00008351517,0.0016921439,0.0012883467,0.0001206278,0.07476184,0.00012133715,0.0011406901,0.027547456],"study_design_scores_gemma":[0.000006739743,0.000053454416,0.997109,0.000016635035,0.000015392669,0.0003972266,0.0004350653,0.00009484691,0.0005225393,0.000010329183,0.0013365141,0.0000023676666],"about_ca_topic_score_codex":0.04463179,"about_ca_topic_score_gemma":0.111097805,"teacher_disagreement_score":0.04463179,"about_ca_system_score_codex":0.00035324405,"about_ca_system_score_gemma":0.00062210095,"threshold_uncertainty_score":0.088743985},"labels":[],"label_agreement":null},{"id":"W2992979013","doi":"10.1128/jcm.01552-19","title":"Bayesian Evaluation of Solana HSV 1+2/VZV Assay Compared to Viral Culture and Commercial PCR Assay for Cutaneous or Mucocutaneous Specimens","year":2019,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Herpesvirus Infections and Treatments","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier Universitaire de Sherbrooke; Hôpital du Sacré-Cœur de Montréal; Université de Sherbrooke","funders":"Canada First Research Excellence Fund; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Mucocutaneous zone; Virology; Herpes simplex virus; Varicella zoster virus; Biology; Virus; Herpesviridae; Simplexvirus; HSL and HSV; Viral culture; Alphaherpesvirinae; Viral disease; Medicine; Pathology","score_opus":0.07274698753426784,"score_gpt":0.4186201543139489,"score_spread":0.34587316677968105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992979013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78680646,0.001571636,0.20650242,0.00045273907,0.000049155067,0.00022680052,0.00042798664,0.000494683,0.0034681356],"genre_scores_gemma":[0.9718168,0.00023938224,0.026775777,0.0000738522,0.00002726373,0.00005160009,0.000463213,0.0000588255,0.00049325486],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9867328,0.008962779,0.00062136224,0.001243201,0.002139208,0.0003007656],"domain_scores_gemma":[0.91067964,0.07404315,0.004703223,0.0020199616,0.0076154806,0.0009385294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.033198345,0.0006972705,0.0009829978,0.0014943164,0.000529841,0.0014587694,0.000957417,0.0012137452,0.001157472],"category_scores_gemma":[0.08023072,0.0007411491,0.0010425022,0.0005254674,0.0007091657,0.0009999236,0.0011626291,0.0007373899,0.00036855976],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009294895,0.00049007544,0.27662194,0.0005792873,0.0013027403,0.00039798155,0.0007518038,0.5175462,0.019029142,0.0051426985,0.0016354086,0.1672079],"study_design_scores_gemma":[0.000088805566,0.0005836555,0.033008955,0.000054896173,0.0002029003,0.00022196195,0.00006279668,0.9594475,0.0045194775,0.0013213108,0.0004122604,0.000075481024],"about_ca_topic_score_codex":0.008585153,"about_ca_topic_score_gemma":0.0075066728,"teacher_disagreement_score":0.033198345,"about_ca_system_score_codex":0.0018572235,"about_ca_system_score_gemma":0.0013531266,"threshold_uncertainty_score":0.17557174},"labels":[],"label_agreement":null},{"id":"W2996943929","doi":"10.1128/jcm.01661-19","title":"Human Blastomycosis in South Africa Caused by<i>Blastomyces percursus</i>and<i>Blastomyces emzantsi</i>sp. nov., 1967 to 2014","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Blastomyces; Blastomycosis; Blastomyces dermatitidis; Microbiology; Biology; Virology; Immunology","score_opus":0.051777308599408725,"score_gpt":0.34675862268618424,"score_spread":0.2949813140867755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2996943929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974329,0.00083946047,0.00012496322,0.00004747708,0.000010413657,0.000037451056,0.00018442883,0.0000040472373,0.0013188525],"genre_scores_gemma":[0.9985154,0.0007922417,0.00015088133,0.00003846709,0.00001349718,0.0000052005503,0.000200825,0.00000153119,0.00028199045],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9998331,0.00002075864,0.00002718946,0.000033748627,0.00003470386,0.00005046777],"domain_scores_gemma":[0.99979764,0.000029731063,0.00008620165,0.000015673191,0.000032494998,0.000038221595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020174203,0.00032102555,0.00018968902,0.00110709,0.00072855287,0.00043370447,0.00016074204,0.00025230434,0.0011931588],"category_scores_gemma":[0.0006136321,0.00026589114,0.00016519015,0.00090402074,0.00067072595,0.00034376179,0.00035522875,0.00018467412,0.00019125451],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038095226,0.000054055778,0.8894895,0.0002526904,0.000023577168,0.07580824,0.0025435006,0.00026537295,0.016963925,0.00018660657,0.0004986593,0.01353295],"study_design_scores_gemma":[0.000020816791,0.0002527645,0.8747531,0.00010719567,0.00004933327,0.10695178,0.0033259003,0.00017708063,0.0065567535,0.00014057386,0.0076457304,0.000018965005],"about_ca_topic_score_codex":0.012496612,"about_ca_topic_score_gemma":0.012229404,"teacher_disagreement_score":0.012496612,"about_ca_system_score_codex":0.0005959214,"about_ca_system_score_gemma":0.0006258657,"threshold_uncertainty_score":0.024847746},"labels":[],"label_agreement":null},{"id":"W2999039702","doi":"","title":"Necessity of Quality-Controlled 16S rRNA Gene Sequence Databases: Identifying Nontuberculous Species.","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Canada","funders":"","keywords":"Gene sequence; 16S ribosomal RNA; Biology; Sequence (biology); Gene; Sequence database; Database; Ribosomal RNA; Genetics; Computational biology; Microbiology; Computer science","score_opus":0.1461478972711771,"score_gpt":0.428475727486291,"score_spread":0.2823278302151139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2999039702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5001784,0.032591805,0.42121834,0.00930638,0.0011455296,0.00193613,0.023884013,0.004381007,0.0053584646],"genre_scores_gemma":[0.30730444,0.00857644,0.6270701,0.0018814433,0.00033368735,0.00088297186,0.05256765,0.00052627624,0.00085701275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9915644,0.0030192216,0.0013742428,0.00090098154,0.0028630458,0.00027811094],"domain_scores_gemma":[0.94651324,0.027560592,0.0050323135,0.006733973,0.012215659,0.0019442303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014829064,0.0006222125,0.0013291377,0.0029727633,0.00080502965,0.0026781796,0.0021396666,0.0013400696,0.0017084822],"category_scores_gemma":[0.04282182,0.00072193495,0.00056501577,0.0024299289,0.0006811364,0.002937787,0.0011417831,0.0016076058,0.0019985132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022660994,0.00082852854,0.026939254,0.005253356,0.0003290819,0.00090186286,0.00049530965,0.0017473251,0.688536,0.0033055998,0.008399491,0.26099822],"study_design_scores_gemma":[0.00062180375,0.002037714,0.057458073,0.0025267494,0.0012547199,0.00962839,0.0024994204,0.03341787,0.7621571,0.013660872,0.114466086,0.00027119787],"about_ca_topic_score_codex":0.0009522553,"about_ca_topic_score_gemma":0.0023082714,"teacher_disagreement_score":0.014829064,"about_ca_system_score_codex":0.00043281238,"about_ca_system_score_gemma":0.0030654985,"threshold_uncertainty_score":0.07842457},"labels":[],"label_agreement":null},{"id":"W3001433907","doi":"10.1128/jcm.01951-19","title":"Performance of the Alethia CMV Assay for Detection of Cytomegalovirus by Use of Neonatal Saliva Swabs","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Cytomegalovirus; Saliva; Subclinical infection; Urine; Medicine; Betaherpesvirinae; Virology; Immunology; Human cytomegalovirus; Herpesviridae; Viral disease; Virus; Internal medicine","score_opus":0.08936468825646945,"score_gpt":0.3714397587124719,"score_spread":0.28207507045600244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3001433907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98049647,0.0021915105,0.014305837,0.000045580964,0.000047316804,0.0003094741,0.00048663362,0.00016681284,0.0019503086],"genre_scores_gemma":[0.96454453,0.00062942633,0.03343236,0.000058145255,0.000018215433,0.00024636587,0.0005342412,0.000021808028,0.0005150446],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99547726,0.0015244909,0.00040972442,0.0008060639,0.0015695518,0.00021290702],"domain_scores_gemma":[0.99801266,0.0008902682,0.00030757164,0.0001824846,0.0005030726,0.00010399831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003220036,0.000825405,0.0007044956,0.0012965217,0.00026367186,0.0006188712,0.0006416264,0.00058277056,0.00052726275],"category_scores_gemma":[0.0052684736,0.00039921596,0.0006456988,0.0007017757,0.00039067687,0.00035908545,0.0005006772,0.00040914954,0.00036504582],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002472548,0.0003953348,0.33793473,0.00036742768,0.00020773114,0.00047552417,0.0008590769,0.0009774539,0.59402,0.00015836088,0.0002499856,0.0618818],"study_design_scores_gemma":[0.000112510636,0.006478302,0.37827173,0.00017629855,0.0004264979,0.0050036525,0.00040756701,0.017952751,0.58792007,0.00015010156,0.0029891967,0.00011141088],"about_ca_topic_score_codex":0.0018361579,"about_ca_topic_score_gemma":0.0018087133,"teacher_disagreement_score":0.003220036,"about_ca_system_score_codex":0.000261426,"about_ca_system_score_gemma":0.00056167896,"threshold_uncertainty_score":0.017029405},"labels":[],"label_agreement":null},{"id":"W3010329081","doi":"10.1128/jcm.01165-19","title":"Direct Determination of Pyrazinamide (PZA) Susceptibility by Sputum Microscopic Observation Drug Susceptibility (MODS) Culture at Neutral pH: the MODS-PZA Assay","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Grand Challenges Canada; Wellcome Trust","keywords":"Pyrazinamide; Mycobacterium tuberculosis; Tuberculosis; Sputum; Drug; Microbiology; Drug resistance; Medicine; Pharmacology; Biology; Pathology","score_opus":0.07291751296365241,"score_gpt":0.400254417099491,"score_spread":0.3273369041358386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3010329081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9706222,0.0044730036,0.01733473,0.00010328198,0.000088911765,0.00039544632,0.0021744324,0.00020711934,0.004600923],"genre_scores_gemma":[0.97896785,0.0013393024,0.01661172,0.0000635124,0.00003960422,0.00008636559,0.0011039164,0.00002842266,0.0017594316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990151,0.00025692585,0.0001197915,0.00016825522,0.0003690253,0.00007089544],"domain_scores_gemma":[0.9991991,0.00024281332,0.00019768692,0.00006427301,0.00023513926,0.00006100377],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000954905,0.00063659914,0.0007836911,0.0012081733,0.00016506654,0.00038607593,0.00025840104,0.00025967293,0.0012502249],"category_scores_gemma":[0.0012967607,0.0002144847,0.0003250693,0.00069817883,0.0003656843,0.00022648857,0.0003678479,0.00023485842,0.0006310104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001052414,0.00012361615,0.29468873,0.0005762036,0.00011725638,0.00077510276,0.0002827177,0.00020449233,0.6409405,0.00013227189,0.00041559423,0.060691092],"study_design_scores_gemma":[0.00007367602,0.0032930148,0.41619512,0.00009507164,0.00035622076,0.007328541,0.00044396552,0.003649912,0.5604496,0.0002471275,0.007811354,0.00005647568],"about_ca_topic_score_codex":0.00080230035,"about_ca_topic_score_gemma":0.0020185488,"teacher_disagreement_score":0.0012502249,"about_ca_system_score_codex":0.0001477201,"about_ca_system_score_gemma":0.00026677936,"threshold_uncertainty_score":0.0050501227},"labels":[],"label_agreement":null},{"id":"W3014074467","doi":"10.1128/jcm.01126-19","title":"Closing the Brief Case: IMP, the Uncommonly Common Carbapenemase","year":2020,"lang":"en","type":"editorial","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Microbiology; Antibiotic resistance; Biology; Clinical microbiology; Antibiotics; Closing (real estate); Medicine","score_opus":0.022311453245493586,"score_gpt":0.35809005345352873,"score_spread":0.3357786002080351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014074467","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010431081,0.0057007363,0.00017644039,0.103326775,0.8891557,0.000017055138,0.00006297953,0.00008664477,0.0013693195],"genre_scores_gemma":[0.00062498223,0.0032310907,0.00009033067,0.0559531,0.93718165,0.0000118060125,0.00002662554,0.000028747836,0.002851611],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974406,0.00050224504,0.00039659193,0.0004683774,0.00098684,0.00020546564],"domain_scores_gemma":[0.9859346,0.006835728,0.0007396324,0.0003583206,0.004038707,0.0020930148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045759208,0.003644494,0.002666531,0.0020308094,0.0024355298,0.0044366606,0.0029856537,0.02002426,0.008563389],"category_scores_gemma":[0.02357379,0.0012280863,0.0018196054,0.0008196232,0.002347027,0.007013495,0.0014093306,0.02902933,0.010293833],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030051762,0.000011650926,0.00007178198,0.000115826886,0.000010796567,0.00030710615,0.000013293652,0.000016882528,0.00004739005,0.00020291393,0.9947988,0.0043735798],"study_design_scores_gemma":[0.00011694199,0.00009655866,0.0007074529,0.0008615011,0.000085165106,0.0031717105,0.00014208385,0.0003265634,0.00021209473,0.0021704568,0.9920548,0.000054764463],"about_ca_topic_score_codex":0.0015102956,"about_ca_topic_score_gemma":0.0025463703,"teacher_disagreement_score":0.02002426,"about_ca_system_score_codex":0.0019177318,"about_ca_system_score_gemma":0.0017302987,"threshold_uncertainty_score":0.028647423},"labels":[],"label_agreement":null},{"id":"W3016843313","doi":"10.1128/jcm.01973-19","title":"Long Noncoding RNA and Predictive Model To Improve Diagnosis of Clinically Diagnosed Pulmonary Tuberculosis","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Natural Science Foundation of China","keywords":"Medicine; Mycobacterium tuberculosis; Tuberculosis; Pulmonary tuberculosis; Disease; Internal medicine; Predictive value of tests; Pathology","score_opus":0.06166278175054259,"score_gpt":0.38430539034844097,"score_spread":0.3226426085978984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016843313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99350256,0.000788001,0.003884142,0.00035506013,0.00008177801,0.000034333018,0.0007237446,0.00007033822,0.0005600474],"genre_scores_gemma":[0.9980564,0.00009035469,0.0009821622,0.000058365084,0.000029515317,0.000015132853,0.00055703166,0.0000054273596,0.00020563329],"study_design_codex":"observational","study_design_gemma":"simulation_or_modeling","domain_scores_codex":[0.9989791,0.0005016759,0.00007628368,0.00025213466,0.000100948004,0.000089856796],"domain_scores_gemma":[0.9943223,0.0042289286,0.0005234942,0.00027793366,0.00033772714,0.00030976307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037680762,0.00087380846,0.0006986667,0.0008518736,0.00035543166,0.0013486942,0.00073844363,0.0008114502,0.0017588959],"category_scores_gemma":[0.010365168,0.00027980414,0.00093100645,0.00045280356,0.00027325988,0.0006090321,0.00073190534,0.0012117397,0.0003944393],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024227295,0.00035868114,0.97295725,0.00004640685,0.00045250956,0.00014943528,0.00008140943,0.007309691,0.0010260865,0.0001384351,0.0006381003,0.014419211],"study_design_scores_gemma":[0.00033642666,0.0019318602,0.59967655,0.00013557031,0.0017539358,0.0006501389,0.0004514776,0.38747066,0.0036072617,0.0025162818,0.0014072281,0.000062532155],"about_ca_topic_score_codex":0.0020228839,"about_ca_topic_score_gemma":0.0018188867,"teacher_disagreement_score":0.0037680762,"about_ca_system_score_codex":0.00036180296,"about_ca_system_score_gemma":0.0005576172,"threshold_uncertainty_score":0.01992768},"labels":[],"label_agreement":null},{"id":"W3017282477","doi":"10.1128/jcm.00283-20","title":"Comparison of Two Multilocus Sequence Typing Schemes for Mycoplasma bovis and Revision of the PubMLST Reference Method","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Ministry of Agriculture and Rural Development; U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Typing; Biology; Mollicutes; Sequence (biology); Atypical pneumonia; Mycoplasma; Genetics; Pneumonia; Medicine; Genotype","score_opus":0.26644302166441164,"score_gpt":0.5218858308531256,"score_spread":0.2554428091887139,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3017282477","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8536641,0.009052473,0.12470021,0.0012030494,0.0010353739,0.00046263094,0.0015189829,0.00075328717,0.0076100137],"genre_scores_gemma":[0.7961586,0.002456834,0.19460943,0.00050303503,0.00015825816,0.00026243165,0.0035054584,0.000118340016,0.0022277504],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98395085,0.007828319,0.0012400219,0.0013282498,0.005089284,0.0005632875],"domain_scores_gemma":[0.9770205,0.0066507966,0.0026816071,0.003634614,0.00889997,0.0011125917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.017690005,0.0005452533,0.00074318814,0.0027552238,0.0004743035,0.0019041009,0.0017769329,0.0011658897,0.0010357492],"category_scores_gemma":[0.031482715,0.00039017753,0.0006675247,0.0017114662,0.00084790384,0.0010112721,0.00089013815,0.0016599195,0.0007247847],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012864463,0.0013840284,0.17648308,0.0012673236,0.00035359408,0.00043902796,0.0021973853,0.006107941,0.2553956,0.006365589,0.003745575,0.5333964],"study_design_scores_gemma":[0.0012417538,0.021598274,0.4095958,0.0013870955,0.0013736541,0.0062575727,0.0021774885,0.058663867,0.40538257,0.005672564,0.08608566,0.00056374626],"about_ca_topic_score_codex":0.0023764228,"about_ca_topic_score_gemma":0.0028538068,"teacher_disagreement_score":0.017690005,"about_ca_system_score_codex":0.0010841133,"about_ca_system_score_gemma":0.0012879604,"threshold_uncertainty_score":0.093554795},"labels":[],"label_agreement":null},{"id":"W3018407240","doi":"10.1128/jcm.01841-19","title":"Performance of a Modified Two-Tiered Testing Enzyme Immunoassay Algorithm for Serologic Diagnosis of Lyme Disease in Nova Scotia","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Nova Scotia Health Authority; Dalhousie University","funders":"","keywords":"Lyme disease; Serology; Immunoassay; Borrelia burgdorferi; Nova scotia; Virology; Gold standard (test); Medicine; LYME; Algorithm; Immunology; Biology; Antibody; Internal medicine; Computer science; Geography","score_opus":0.06825865053170768,"score_gpt":0.33274817522386335,"score_spread":0.2644895246921557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3018407240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.913401,0.0008669032,0.06628278,0.0011002078,0.000296521,0.0024978542,0.0033393167,0.0016517319,0.010563828],"genre_scores_gemma":[0.89424413,0.00028035682,0.10021044,0.0002979179,0.00002820903,0.0003050625,0.0018543281,0.000071925555,0.002707566],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99789125,0.00042650037,0.00038243004,0.0004280033,0.00064328953,0.00022849403],"domain_scores_gemma":[0.99556327,0.0006387657,0.0006764375,0.0002476729,0.0025079285,0.0003658609],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024651203,0.0006956639,0.0005373878,0.0013129539,0.00046255,0.0011433859,0.0011334016,0.00037557626,0.0013993705],"category_scores_gemma":[0.0074536805,0.0003968895,0.00043881396,0.0007338455,0.00033085412,0.0003499722,0.00083513686,0.00033059492,0.0005470359],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002793176,0.00037608645,0.7508687,0.0004572269,0.00019479445,0.0010000669,0.00064340903,0.018101541,0.025095785,0.0005414323,0.009523072,0.1904047],"study_design_scores_gemma":[0.00030293196,0.0013052123,0.7726999,0.0002647424,0.00024930306,0.0024680274,0.0006514766,0.19934794,0.013691885,0.00047772855,0.008408163,0.0001326049],"about_ca_topic_score_codex":0.24226949,"about_ca_topic_score_gemma":0.3587101,"teacher_disagreement_score":0.7577305,"about_ca_system_score_codex":0.0032453018,"about_ca_system_score_gemma":0.005172938,"threshold_uncertainty_score":0.48171866},"labels":[],"label_agreement":null},{"id":"W3019547121","doi":"10.1128/jcm.01775-19","title":"Multicenter Clinical Evaluation of the Revogene Strep A Molecular Assay for Detection of Streptococcus pyogenes from Throat Swab Specimens","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"B.C. Women's Hospital & Health Centre; BC Children's Hospital; Children's & Women's Health Centre of British Columbia","funders":"","keywords":"Streptococcus pyogenes; Pharyngitis; Throat; Streptococcus; Multicenter study; Throat culture; Microbiology; Streptococcaceae; Group A; Medicine; Molecular diagnostics; Antibiotics; Biology; Bacteria; Internal medicine; Surgery; Bioinformatics; Staphylococcus aureus; Randomized controlled trial","score_opus":0.1464380468913696,"score_gpt":0.4469485247175916,"score_spread":0.300510477826222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3019547121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976913,0.00044439425,0.0007085202,0.00004296556,0.000016700207,0.0003142731,0.00032521633,0.000026317099,0.0004304318],"genre_scores_gemma":[0.9977701,0.00012394057,0.0011838465,0.00006847651,0.00002137886,0.00016233955,0.0005505085,0.000008101216,0.00011131829],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9931699,0.003201599,0.00041245058,0.0013907218,0.001515243,0.00031006688],"domain_scores_gemma":[0.9915035,0.0016842555,0.0018621573,0.00078759785,0.0032995362,0.0008629291],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009362008,0.0010477689,0.0006428558,0.0005447688,0.00069760944,0.00087300665,0.00069132145,0.0007872363,0.0005508515],"category_scores_gemma":[0.011242759,0.00058908976,0.00038358237,0.00055617397,0.0007349877,0.0005686618,0.0004929571,0.0007721606,0.00036348385],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009875438,0.0018086971,0.96381056,0.0000820099,0.00028536448,0.00030884493,0.0004200018,0.0003622709,0.0094383415,0.0000493525,0.0005405976,0.013018522],"study_design_scores_gemma":[0.0012949359,0.031883486,0.9575348,0.000028845481,0.00024445858,0.0012664367,0.00024237744,0.001989786,0.004219236,0.00002467367,0.001231694,0.000039405146],"about_ca_topic_score_codex":0.004731168,"about_ca_topic_score_gemma":0.004469844,"teacher_disagreement_score":0.009362008,"about_ca_system_score_codex":0.0010973504,"about_ca_system_score_gemma":0.0015797459,"threshold_uncertainty_score":0.04951167},"labels":[],"label_agreement":null},{"id":"W3021885042","doi":"10.1128/jcm.00480-20","title":"Resolution of Streptococcus suis Serotypes 1/2 versus 2 and 1 versus 14 by PCR-Restriction Fragment Length Polymorphism Method","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Ministerstvo Zemědělství","keywords":"Serotype; Streptococcus suis; Biology; Virology; Microbiology; Restriction fragment length polymorphism; Pathogen; Polymerase chain reaction; Genetics; Gene; Virulence","score_opus":0.09722985412032584,"score_gpt":0.41122121001201783,"score_spread":0.313991355891692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021885042","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9190249,0.0062736743,0.061090596,0.0004944048,0.00031427346,0.0002793374,0.0026414832,0.0004463671,0.009434954],"genre_scores_gemma":[0.8717407,0.0020440805,0.115029685,0.0007133453,0.00007014198,0.00016834371,0.0053348583,0.00021637914,0.004682527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980233,0.0005377406,0.0001907197,0.000636379,0.00031262863,0.00029924206],"domain_scores_gemma":[0.9974074,0.0011978273,0.00076875044,0.00013733629,0.00035805473,0.0001306688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010810904,0.00072541833,0.00067394896,0.0014402886,0.00020308839,0.00097311113,0.00040592052,0.00073774066,0.001954969],"category_scores_gemma":[0.0033605557,0.00042666134,0.0005869793,0.0006858187,0.0004738053,0.0003425252,0.0003420258,0.001151665,0.0014942916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007153327,0.0001611778,0.013200222,0.00020864164,0.00007207932,0.00020542242,0.00021875676,0.00022334978,0.9620991,0.00033572258,0.00027798265,0.022282323],"study_design_scores_gemma":[0.000081635415,0.0016021546,0.12859331,0.00025269738,0.00037641675,0.0035624353,0.0005725275,0.0037890892,0.8439526,0.00082160067,0.016325803,0.000069732836],"about_ca_topic_score_codex":0.0009924556,"about_ca_topic_score_gemma":0.0015555011,"teacher_disagreement_score":0.001954969,"about_ca_system_score_codex":0.0002239254,"about_ca_system_score_gemma":0.0004250941,"threshold_uncertainty_score":0.00654006},"labels":[],"label_agreement":null},{"id":"W3030789693","doi":"10.1128/jcm.01950-19","title":"Fourth-Generation QuantiFERON-TB Gold Plus: What Is the Evidence?","year":2020,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"QuantiFERON; Latent tuberculosis; Medicine; Gold standard (test); Tuberculosis; CD8; Mycobacterium tuberculosis; Immunology; Interferon gamma; Virology; Immune system; Internal medicine; Pathology","score_opus":0.4278778670785413,"score_gpt":0.5391442456433803,"score_spread":0.11126637856483895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3030789693","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011784789,0.9969625,0.00009179858,0.0020472703,0.0004525018,0.000013010821,0.00006702761,0.0000059154618,0.0002421326],"genre_scores_gemma":[0.0025065588,0.99286157,0.0004831435,0.002830594,0.0009934889,0.000032075994,0.00017745911,0.000008736875,0.0001064483],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9861623,0.0046597933,0.0038978984,0.0015109786,0.0033559324,0.00041307538],"domain_scores_gemma":[0.88656807,0.08167568,0.0122452825,0.0014282352,0.016706109,0.0013767078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.023264447,0.0013474218,0.0059875315,0.0074545755,0.00085770333,0.0057302387,0.003951558,0.004061671,0.00557691],"category_scores_gemma":[0.084833086,0.0011109842,0.0040908335,0.0064758477,0.0021553237,0.005506291,0.00218758,0.004428128,0.0019074378],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006271946,0.000055313765,0.00318554,0.2371242,0.0036909238,0.00012278944,0.00021079353,0.00019491943,0.00028669584,0.0016064781,0.026595782,0.72629935],"study_design_scores_gemma":[0.00027452508,0.0006053691,0.009269274,0.5092778,0.015496917,0.0011630737,0.00070303085,0.000352253,0.0008572305,0.0047041797,0.45714918,0.00014722196],"about_ca_topic_score_codex":0.004825534,"about_ca_topic_score_gemma":0.0068746433,"teacher_disagreement_score":0.023264447,"about_ca_system_score_codex":0.003154579,"about_ca_system_score_gemma":0.008468222,"threshold_uncertainty_score":0.12303567},"labels":[],"label_agreement":null},{"id":"W3032763831","doi":"10.1128/jcm.00178-20","title":"Evaluation of the FecalSwab for Stool Specimen Storage and Molecular Detection of Enteropathogens on the BD Max System","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; McMaster University; University of Alberta; St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Food and drug administration; Microbiology; Enteric fever; Virology; Biology; Medicine; Pharmacology; Typhoid fever","score_opus":0.1338563067030015,"score_gpt":0.4073180567946244,"score_spread":0.2734617500916229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3032763831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8747864,0.006877702,0.09858903,0.0012084277,0.000821153,0.0021769814,0.004348728,0.001454261,0.009737406],"genre_scores_gemma":[0.79412085,0.0037145363,0.18808751,0.0009752544,0.00020590144,0.001053419,0.0068543064,0.00039409328,0.00459416],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940725,0.0017273661,0.00052484265,0.00058058836,0.0027102455,0.00038446055],"domain_scores_gemma":[0.9969351,0.00061977806,0.0004562414,0.00019771623,0.0015956238,0.00019552985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045721927,0.0012556632,0.00066908833,0.00147262,0.0005347576,0.0014313672,0.00078839995,0.00056528946,0.0024257437],"category_scores_gemma":[0.005582429,0.00041261714,0.00047793856,0.00093361264,0.000481683,0.00069276546,0.0009843089,0.0004657799,0.0012934506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022718515,0.000548489,0.043947447,0.0010049909,0.000101184436,0.00061183237,0.00047753728,0.0004534156,0.8938341,0.00055384147,0.0027986735,0.05339662],"study_design_scores_gemma":[0.00007424319,0.004251087,0.05569375,0.0003335846,0.00029540196,0.002714864,0.0005500749,0.007361058,0.90536445,0.0002284606,0.02304627,0.000086830296],"about_ca_topic_score_codex":0.0017640742,"about_ca_topic_score_gemma":0.0027180044,"teacher_disagreement_score":0.0045721927,"about_ca_system_score_codex":0.00044640878,"about_ca_system_score_gemma":0.0009852444,"threshold_uncertainty_score":0.024180353},"labels":[],"label_agreement":null},{"id":"W3033796793","doi":"10.1128/jcm.01110-20","title":"A Public Health Laboratory Response to the Pandemic","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; University of Calgary","funders":"","keywords":"Pandemic; Public health; Virology; 2019-20 coronavirus outbreak; Coronavirus disease 2019 (COVID-19); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Betacoronavirus; Medicine; Outbreak; Infectious disease (medical specialty); Pathology; Disease","score_opus":0.31189661146493497,"score_gpt":0.45458194442280464,"score_spread":0.14268533295786967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033796793","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.048561458,0.014077622,0.03901382,0.7599291,0.012439495,0.0026458807,0.0006838161,0.0054971506,0.11715179],"genre_scores_gemma":[0.47160146,0.010117974,0.081125215,0.32550538,0.004615041,0.00077421695,0.0016824641,0.0007298206,0.10384848],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.974916,0.0058649816,0.0009116158,0.0023358818,0.008309933,0.007661695],"domain_scores_gemma":[0.96752506,0.0015414547,0.0017722232,0.0011638561,0.01152482,0.016472625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.025047937,0.001550807,0.00049511075,0.0036266446,0.009250852,0.013902392,0.0073202415,0.0071478086,0.009941388],"category_scores_gemma":[0.0150962835,0.0009786227,0.0008969987,0.0025135141,0.009920533,0.0035213833,0.013961198,0.00863165,0.002151246],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005560758,0.0009357689,0.04492246,0.0014249797,0.0002590049,0.00398936,0.013289331,0.0062621296,0.033938788,0.058074266,0.4277935,0.40855432],"study_design_scores_gemma":[0.00014173408,0.00062450516,0.048631098,0.00082188,0.000083442756,0.00073734246,0.02013828,0.0022535615,0.0041534575,0.011130656,0.91101164,0.00027222713],"about_ca_topic_score_codex":0.43410325,"about_ca_topic_score_gemma":0.42724785,"teacher_disagreement_score":0.43410325,"about_ca_system_score_codex":0.07079399,"about_ca_system_score_gemma":0.21560164,"threshold_uncertainty_score":0.863153},"labels":[],"label_agreement":null},{"id":"W3042807426","doi":"10.1128/jcm.01361-20","title":"Evaluation of Six Commercial Mid- to High-Volume Antibody and Six Point-of-Care Lateral Flow Assays for Detection of SARS-CoV-2 Antibodies","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Health Services; Public Health Agency of Canada; University of Calgary; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Medicine; Serology; Seroprevalence; Antibody; Population; Rhinovirus; Virology; Immunology; Gastroenterology; Virus","score_opus":0.13415363702378183,"score_gpt":0.4361734476443322,"score_spread":0.3020198106205504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3042807426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9617112,0.001524473,0.025800427,0.0002630467,0.00041092036,0.0017252144,0.0011773643,0.00049997726,0.006887442],"genre_scores_gemma":[0.97024214,0.00025799297,0.023879379,0.00049551233,0.0000693562,0.00044865176,0.0022086669,0.000051227726,0.0023470377],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9915249,0.0029532223,0.0008518166,0.0014481274,0.0026755752,0.0005463355],"domain_scores_gemma":[0.9917384,0.0037427754,0.0005768564,0.00072301645,0.0028013627,0.0004176923],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009964585,0.0015329301,0.0005366428,0.0009085273,0.00041061811,0.00075856777,0.0008333804,0.0016466774,0.0018116366],"category_scores_gemma":[0.008972992,0.0006097712,0.00087070296,0.0005090012,0.0006207908,0.0005033221,0.00052665273,0.00052876584,0.0010558602],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008534054,0.0064205267,0.3808082,0.0011945434,0.00061785005,0.00069455855,0.0015954635,0.0017545563,0.46671504,0.000602382,0.0026614866,0.1284013],"study_design_scores_gemma":[0.0010337121,0.029710574,0.48278347,0.00019448044,0.0005849191,0.004513788,0.0005210625,0.017116398,0.44229016,0.00036715597,0.020728672,0.00015563154],"about_ca_topic_score_codex":0.0016920543,"about_ca_topic_score_gemma":0.0019097915,"teacher_disagreement_score":0.009964585,"about_ca_system_score_codex":0.00055361807,"about_ca_system_score_gemma":0.00042034715,"threshold_uncertainty_score":0.052698374},"labels":[],"label_agreement":null},{"id":"W3044428161","doi":"10.1128/jcm.01416-20","title":"The First Quarter of SARS-CoV-2 Testing: the University of Washington Medicine Experience","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Medicine; Diagnostic test; Coronavirus; Quarter (Canadian coin); Sars virus; Virology; Test (biology); Clinical microbiology; Betacoronavirus; Family medicine; Pediatrics; History; Pathology; Biology; Infectious disease (medical specialty); Disease; Outbreak","score_opus":0.16355172738679283,"score_gpt":0.3785168243890027,"score_spread":0.21496509700220987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044428161","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1746045,0.09845983,0.0045859823,0.59960127,0.0126423305,0.00019234174,0.0006035022,0.00037389147,0.10893627],"genre_scores_gemma":[0.6353482,0.12920205,0.007263214,0.16999133,0.009956327,0.00016300408,0.0007968439,0.0003937751,0.0468853],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9939014,0.001769528,0.0004992718,0.00079909514,0.0017964825,0.0012343246],"domain_scores_gemma":[0.9825822,0.0025443279,0.0011412154,0.00070673245,0.0036903834,0.009335085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013008094,0.0006077804,0.0003295766,0.0014723284,0.0027572776,0.0064454726,0.0015704735,0.003366635,0.007523954],"category_scores_gemma":[0.016990112,0.0007219088,0.00038374038,0.001264407,0.0026189152,0.0047225114,0.0043243123,0.009719627,0.0015988803],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044786077,0.001455386,0.06265715,0.00071965123,0.000059740112,0.005710609,0.01234848,0.0006135529,0.0033611862,0.01538664,0.35580564,0.5414341],"study_design_scores_gemma":[0.000045795467,0.0008577521,0.050920293,0.0020161495,0.000035773362,0.0057607847,0.016530864,0.00050294783,0.001910182,0.0038391484,0.9174705,0.00010973689],"about_ca_topic_score_codex":0.023196753,"about_ca_topic_score_gemma":0.043286487,"teacher_disagreement_score":0.023196753,"about_ca_system_score_codex":0.006177224,"about_ca_system_score_gemma":0.009441676,"threshold_uncertainty_score":0.06879419},"labels":[],"label_agreement":null},{"id":"W3044877570","doi":"10.1128/jcm.00961-20","title":"Erratum for McTaggart et al., “Phylogeny and Identiﬁcation of <i>Nocardia</i> Species on the Basis of Multilocus Sequence Analysis”","year":2020,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Actinomycetales infections and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; Toronto Public Health","funders":"","keywords":"Phylogenetics; Nocardia; Multilocus sequence typing; Biology; Sequence (biology); Evolutionary biology; Genetics; Bacteria; Genotype; Gene","score_opus":0.09456154442155255,"score_gpt":0.4044852810998993,"score_spread":0.3099237366783467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3044877570","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020425364,0.001962602,0.000732085,0.03875799,0.951999,0.00003630471,0.0013008285,0.00023424072,0.004772679],"genre_scores_gemma":[0.008826673,0.018321775,0.009864766,0.19231986,0.36910355,0.00028974062,0.010813014,0.0016211722,0.3888395],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982539,0.00025257637,0.00036149786,0.00023117047,0.00078382425,0.00011691511],"domain_scores_gemma":[0.9914602,0.0024167602,0.00060477376,0.00038329267,0.004471881,0.0006630201],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002055928,0.0026347386,0.0015882091,0.003651019,0.0026971367,0.0024908788,0.0024254587,0.004032403,0.05024049],"category_scores_gemma":[0.019559884,0.0014341152,0.0012332204,0.0020762566,0.0012836203,0.0021202152,0.001057702,0.0073366323,0.05059587],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000022222313,0.000010950611,0.000047670415,0.00004591941,0.0000029960124,0.00008341077,0.000008227725,0.000017792709,0.00004989765,0.00013489052,0.9951083,0.004467728],"study_design_scores_gemma":[0.000038160848,0.000040061586,0.00086588296,0.0002922507,0.000025912072,0.00045836472,0.00005736095,0.00012399822,0.0002688837,0.00036506332,0.9974426,0.000021577356],"about_ca_topic_score_codex":0.023064062,"about_ca_topic_score_gemma":0.034806944,"teacher_disagreement_score":0.05024049,"about_ca_system_score_codex":0.0025772392,"about_ca_system_score_gemma":0.00390901,"threshold_uncertainty_score":0.16807115},"labels":[],"label_agreement":null},{"id":"W3045502864","doi":"10.1128/jcm.01032-20","title":"An Optimal Diagnostic Strategy for Tuberculosis in Hospitalized HIV-Infected Patients Using GeneXpert MTB/RIF and Alere Determine TB LAM Ag","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; University of Toronto; St. Michael's Hospital","funders":"Medical Research Council; European and Developing Countries Clinical Trials Partnership; National Research Foundation; Alere","keywords":"GeneXpert MTB/RIF; Medicine; Lipoarabinomannan; Tuberculosis; Sputum; Human immunodeficiency virus (HIV); Tuberculosis diagnosis; Internal medicine; Virology; Immunology; Mycobacterium tuberculosis; Pathology","score_opus":0.09711532014588807,"score_gpt":0.42687351600867757,"score_spread":0.3297581958627895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3045502864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878612,0.009482634,0.0007054224,0.0006877712,0.00008210238,0.00047371743,0.00011577055,0.000018025008,0.00057340704],"genre_scores_gemma":[0.9973647,0.0008622071,0.0011255263,0.0002910833,0.00004161918,0.00014636491,0.000088764216,0.0000018310868,0.00007792962],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.9979322,0.0011553686,0.00027971045,0.00024002374,0.00022390817,0.00016879392],"domain_scores_gemma":[0.99809366,0.0009823623,0.0005192852,0.00005495441,0.00006873856,0.00028103634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022980617,0.0006592881,0.0014998813,0.0006254048,0.00018335521,0.0008155284,0.00055346824,0.0010620969,0.0012804583],"category_scores_gemma":[0.005211513,0.0004275915,0.002278242,0.00032629204,0.00039556084,0.0007522334,0.00040146703,0.0010034159,0.000101833255],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6309021,0.015268212,0.0948864,0.0028108293,0.0083099855,0.00042762895,0.00025494938,0.0112160295,0.0071559395,0.00064493745,0.0012003552,0.22692268],"study_design_scores_gemma":[0.3619204,0.3517081,0.20788977,0.0016300315,0.02143801,0.0007812772,0.00053182687,0.04270212,0.0069336095,0.001887901,0.0024078866,0.00016904864],"about_ca_topic_score_codex":0.0015791962,"about_ca_topic_score_gemma":0.0031608078,"teacher_disagreement_score":0.0022980617,"about_ca_system_score_codex":0.0010910654,"about_ca_system_score_gemma":0.0013310164,"threshold_uncertainty_score":0.012153447},"labels":[],"label_agreement":null},{"id":"W3047108013","doi":"10.1128/jcm.01582-19","title":"Advances in Molecular Diagnosis of Tuberculosis","year":2020,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":212,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Tuberculosis; Nucleic Acid Amplification Tests; Medicine; Mycobacterium tuberculosis; Human immunodeficiency virus (HIV); Molecular diagnostics; Diagnostic test; Disease; Pathology; Virology; Pediatrics; Bioinformatics; Biology","score_opus":0.09789293803978798,"score_gpt":0.49418218370181943,"score_spread":0.39628924566203144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047108013","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000050125847,0.9976725,0.0002841448,0.0006543472,0.0005042552,0.0000045149504,0.00001351179,0.000010790728,0.00080578355],"genre_scores_gemma":[0.00061565696,0.9972746,0.0004473256,0.0005371497,0.00065272005,0.000007072432,0.000031528878,0.0000028891895,0.00043106644],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99875975,0.00030998886,0.00015191273,0.00021038142,0.00045820203,0.00010983412],"domain_scores_gemma":[0.99711716,0.0017621868,0.0002196145,0.00009993236,0.0006738642,0.00012724723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002699078,0.0012142197,0.0017240093,0.003986075,0.00033546492,0.0014678297,0.0013258075,0.002120845,0.004227105],"category_scores_gemma":[0.0037639365,0.0004856724,0.0010722032,0.0024900425,0.0012678269,0.0030244256,0.0012959859,0.004117122,0.0037819545],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007333599,0.00007273697,0.0003259963,0.016319579,0.00010982138,0.0002250968,0.000084589876,0.00030456175,0.002342529,0.0073905,0.04053036,0.9322209],"study_design_scores_gemma":[0.00001295298,0.00007911111,0.0006269927,0.0031097725,0.00008258576,0.0012858922,0.000045677793,0.00010325938,0.00078057824,0.0031794773,0.99066365,0.000029983206],"about_ca_topic_score_codex":0.001540347,"about_ca_topic_score_gemma":0.001234565,"teacher_disagreement_score":0.004227105,"about_ca_system_score_codex":0.0013586371,"about_ca_system_score_gemma":0.0018429576,"threshold_uncertainty_score":0.01427424},"labels":[],"label_agreement":null},{"id":"W3048612251","doi":"10.1128/jcm.01306-20","title":"Susceptibility of Clinical Isolates of Escherichia coli to Fosfomycin as Measured by Four <i>In Vitro</i> Testing Methods","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Fosfomycin; Agar dilution; Etest; Agar; Microbiology; Agar Dilution Method; Escherichia coli; Biology; Enterobacteriaceae; Agar gel; Bacteria; Minimum inhibitory concentration; Antibiotics; Molecular biology","score_opus":0.08946297458840875,"score_gpt":0.414301854401932,"score_spread":0.3248388798135233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048612251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893736,0.0015215453,0.0037628452,0.0001658517,0.00005290863,0.00028891885,0.0020514748,0.00006370773,0.0027190172],"genre_scores_gemma":[0.98183227,0.0012695331,0.010880942,0.00015231325,0.000036817928,0.0002684017,0.003991266,0.00002238502,0.0015459812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972257,0.0007949995,0.00060116424,0.00048381343,0.00070252223,0.00019176176],"domain_scores_gemma":[0.996581,0.0007698204,0.0008002374,0.0003427052,0.0012851758,0.00022097485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012307023,0.0007466186,0.0007950137,0.0008587214,0.00026039986,0.00064091076,0.00054897426,0.0005125903,0.00117869],"category_scores_gemma":[0.0034120346,0.00029454404,0.0004853915,0.0010896018,0.00040208467,0.00030299736,0.00039404843,0.00047186407,0.00046651688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044388184,0.0009729115,0.28448468,0.0007570658,0.00017574569,0.0006981084,0.00079365465,0.00046153172,0.67880195,0.000101792415,0.00070846593,0.027605262],"study_design_scores_gemma":[0.000083026796,0.010089586,0.32546955,0.00009595925,0.00028048552,0.003719144,0.00069248147,0.0010015259,0.65433043,0.00008214179,0.0040777195,0.00007791981],"about_ca_topic_score_codex":0.0023462311,"about_ca_topic_score_gemma":0.002731259,"teacher_disagreement_score":0.0023462311,"about_ca_system_score_codex":0.00034680366,"about_ca_system_score_gemma":0.0004114045,"threshold_uncertainty_score":0.0065086484},"labels":[],"label_agreement":null},{"id":"W3048715462","doi":"10.1128/jcm.01668-20","title":"Low-Cost Polyester-Tipped Three-Dimensionally Printed Nasopharyngeal Swab for the Detection of Severe Acute Respiratory Syndrome-Related Coronavirus 2 (SARS-CoV-2)","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal Children's Hospital","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Coronavirus; Contact tracing; Isolation (microbiology); Polylactic acid; 2019-20 coronavirus outbreak; Medicine; Virology; Respiratory system; Microbiology; Biology; Pathology; Internal medicine; Disease; Materials science; Infectious disease (medical specialty); Outbreak","score_opus":0.11127267750876688,"score_gpt":0.3874539419865164,"score_spread":0.2761812644777495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048715462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99305165,0.0009847893,0.0042349347,0.000046378642,0.00005383651,0.0003553772,0.00024153081,0.00003670235,0.0009947201],"genre_scores_gemma":[0.98387367,0.0006248044,0.013488763,0.00014205958,0.000015020969,0.00022878798,0.00024968688,0.000006380685,0.0013709805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856216,0.00037821394,0.0000936271,0.00025760804,0.0006590248,0.000049325736],"domain_scores_gemma":[0.99922204,0.00030305103,0.00021867367,0.000091940856,0.00011828531,0.00004600132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008009029,0.00042799357,0.0002778868,0.00041154472,0.00018472801,0.00064982206,0.00052106456,0.00081243285,0.0019641772],"category_scores_gemma":[0.0014986299,0.00029566436,0.00044188957,0.0003076589,0.0003021856,0.00041113142,0.00036804995,0.0003787336,0.0006155795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0047963914,0.005503513,0.040011015,0.0008075641,0.00014772425,0.0007465806,0.0003153961,0.0012087717,0.8762028,0.00016385144,0.00028352847,0.069812864],"study_design_scores_gemma":[0.0003511013,0.12267299,0.1535294,0.000114313196,0.00033510805,0.0056860186,0.0008059096,0.0077256956,0.7025829,0.0002506191,0.0058380067,0.00010787734],"about_ca_topic_score_codex":0.0003099656,"about_ca_topic_score_gemma":0.000669168,"teacher_disagreement_score":0.0019641772,"about_ca_system_score_codex":0.0002222756,"about_ca_system_score_gemma":0.00030119214,"threshold_uncertainty_score":0.006570816},"labels":[],"label_agreement":null},{"id":"W3049458007","doi":"10.1128/jcm.00097-20","title":"Whole-Genome Sequencing of Porcine Reproductive and Respiratory Syndrome Virus from Field Clinical Samples Improves the Genomic Surveillance of the Virus","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Fonds de recherche du Québec – Nature et technologies; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Porcine reproductive and respiratory syndrome virus; Biology; Genome; Virology; Virus; Whole genome sequencing; DNA sequencing; Gene; Genetics","score_opus":0.1157202588113318,"score_gpt":0.3230096258335767,"score_spread":0.20728936702224487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3049458007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96379524,0.0024192852,0.014285323,0.0003114642,0.000057617606,0.0002252104,0.016673902,0.00022938458,0.002002611],"genre_scores_gemma":[0.9179787,0.0014737066,0.027270127,0.000443554,0.00005228798,0.00014102818,0.05046827,0.000091723115,0.002080507],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9994531,0.00011743954,0.000042146068,0.00017745665,0.00013870248,0.00007105888],"domain_scores_gemma":[0.9992131,0.00018685388,0.00015531204,0.00008568625,0.0002739093,0.00008501782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086231896,0.00047327767,0.00051599677,0.00090442604,0.00024473722,0.000590626,0.00027855232,0.00055460964,0.0015242428],"category_scores_gemma":[0.0011608276,0.00019131944,0.00044467294,0.0006382409,0.00022288617,0.0002392868,0.00023709779,0.0003631491,0.00064490666],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000335051,0.00010594118,0.13154092,0.00053155527,0.00017817723,0.00030841012,0.00032456502,0.0009055246,0.82934123,0.0001474356,0.002084806,0.03419643],"study_design_scores_gemma":[0.00004375081,0.000654533,0.9213928,0.000129541,0.00018726682,0.001514077,0.0005023392,0.0051359604,0.055663113,0.0002528383,0.014498119,0.000025746376],"about_ca_topic_score_codex":0.005609781,"about_ca_topic_score_gemma":0.012856598,"teacher_disagreement_score":0.005609781,"about_ca_system_score_codex":0.00033634913,"about_ca_system_score_gemma":0.00066880655,"threshold_uncertainty_score":0.011154234},"labels":[],"label_agreement":null},{"id":"W3093764202","doi":"10.1128/jcm.02593-20","title":"Comparison of Upper Respiratory Viral Load Distributions in Asymptomatic and Symptomatic Children Diagnosed with SARS-CoV-2 Infection in Pediatric Hospital Testing Programs","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Asymptomatic; Medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Viral load; Respiratory system; Coronavirus disease 2019 (COVID-19); Pediatrics; Liter; Internal medicine; Virology; Virus; Disease; Infectious disease (medical specialty)","score_opus":0.09308155695827548,"score_gpt":0.42750397927084866,"score_spread":0.3344224223125732,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093764202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99961394,0.00004247544,0.00007189484,0.000007592142,9.57763e-7,0.000003350716,0.000089011155,0.0000046164573,0.00016618012],"genre_scores_gemma":[0.9997011,0.00002725417,0.00008012623,0.000009444127,0.000002123388,0.000004153805,0.00014052726,0.0000023865448,0.00003272057],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99911326,0.00018773826,0.000100593374,0.00018151189,0.00019914753,0.0002176832],"domain_scores_gemma":[0.99714005,0.0009524476,0.0010235085,0.00010632613,0.0003702408,0.0004074471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055067486,0.00019028319,0.00027567756,0.0011267231,0.00030851303,0.00053009024,0.00025291802,0.00030126533,0.00089325925],"category_scores_gemma":[0.0039918534,0.00020670235,0.00018669816,0.0006829909,0.00050441717,0.00051893276,0.00041727518,0.00031985366,0.00012191832],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008019413,0.000014923447,0.99767536,0.000005816122,0.000006333024,0.000112469424,0.0001831416,0.00004573888,0.00049756945,0.000015831873,0.000046412224,0.0013162689],"study_design_scores_gemma":[0.0000033236133,0.00018659115,0.99811745,0.000005289948,0.000005670796,0.00050286984,0.00055071036,0.00016543314,0.00037365843,0.000009961254,0.00007597274,0.0000030689482],"about_ca_topic_score_codex":0.0039875996,"about_ca_topic_score_gemma":0.0047759726,"teacher_disagreement_score":0.0039875996,"about_ca_system_score_codex":0.00047806435,"about_ca_system_score_gemma":0.0004007335,"threshold_uncertainty_score":0.007928789},"labels":[],"label_agreement":null},{"id":"W3094000766","doi":"10.1128/jcm.01813-19","title":"Potential Contributions of Anaerobes in Cystic Fibrosis Airways","year":2020,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute; University of Calgary","funders":"Cystic Fibrosis Canada","keywords":"Cystic fibrosis; Obligate anaerobe; Obligate; Population; Biology; Facultative; Respiratory disease; Lung; Microbiology; Immunology; Medicine; Bacteria; Internal medicine; Genetics","score_opus":0.05326711350023331,"score_gpt":0.4535020510712947,"score_spread":0.4002349375710614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3094000766","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010938179,0.9990006,0.000049986116,0.00022111877,0.00019365759,0.0000020500167,0.000006800514,0.0000029688483,0.00041339057],"genre_scores_gemma":[0.00074168976,0.9985189,0.000105364255,0.0001264125,0.00020445682,0.0000027611848,0.000014937788,7.7765225e-7,0.00028469277],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99976677,0.00004645437,0.000041367286,0.000034976158,0.00008582118,0.0000246351],"domain_scores_gemma":[0.99963474,0.00016950732,0.00005159732,0.0000075149405,0.00009820337,0.000038409158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005503438,0.000592366,0.00094708824,0.0025348363,0.00026405224,0.0010373105,0.0006043409,0.0011352142,0.0023447848],"category_scores_gemma":[0.0008545161,0.0002047053,0.00042529815,0.0014771543,0.0003498736,0.0010106402,0.00067523995,0.0013691377,0.0011663669],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008241391,0.00005522613,0.00045412875,0.016342299,0.00007544933,0.00033599988,0.000097620155,0.0002160119,0.0016385191,0.0027607167,0.018294998,0.95964664],"study_design_scores_gemma":[0.000014599537,0.00014868993,0.00183641,0.006985962,0.00012630323,0.0026478725,0.00014602761,0.00010141513,0.0007220943,0.0017968677,0.98545164,0.000022128896],"about_ca_topic_score_codex":0.0008685903,"about_ca_topic_score_gemma":0.0015907352,"teacher_disagreement_score":0.0025348363,"about_ca_system_score_codex":0.000437855,"about_ca_system_score_gemma":0.0009373481,"threshold_uncertainty_score":0.00784409},"labels":[],"label_agreement":null},{"id":"W3096463026","doi":"10.1128/jcm.02287-20","title":"A Clinical Epidemiology and Molecular Attribution Evaluation of Adenoviruses in Pediatric Acute Gastroenteritis: a Case-Control Study","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Children's Hospital; Stollery Children's Hospital; Provincial Laboratory of Public Health; Women and Children’s Health Research Institute; University of Calgary; Alberta Hospital Edmonton; University of Alberta; McGill University Health Centre","funders":"Alberta Children's Hospital Research Institute; Calgary Laboratory Services; Women and Children's Health Research Institute; Alberta Children's Hospital Foundation; University of Alberta; Alberta Innovates - Health Solutions","keywords":"Serotype; Acute gastroenteritis; Diarrhea; Etiology; Epidemiology; Medicine; Virology; Vomiting; Multiplex; Pediatrics; Internal medicine; Biology; Bioinformatics","score_opus":0.19911202253383264,"score_gpt":0.49808604410349827,"score_spread":0.2989740215696656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096463026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99904424,0.0002437066,0.00036674296,0.000008552643,0.000005318464,0.00004020697,0.00006491611,0.0000035169498,0.0002228766],"genre_scores_gemma":[0.9990382,0.00014703447,0.0005181199,0.000017091117,0.000014952543,0.00004925799,0.00013549636,0.0000027649667,0.000077105564],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978477,0.0007276341,0.00023274355,0.0005739817,0.00042236573,0.0001954682],"domain_scores_gemma":[0.9977458,0.0006256978,0.0007021306,0.0003239269,0.0003864476,0.00021600131],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017628033,0.0005938372,0.00048779824,0.0013328418,0.0008009772,0.0006747298,0.00044225872,0.0006127543,0.0011438618],"category_scores_gemma":[0.0036626519,0.00054555765,0.00042628244,0.0009314598,0.00063711015,0.0005140319,0.00045275997,0.00039079064,0.00017786499],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036708746,0.00030466984,0.9958139,0.000024687286,0.00007029488,0.00032783457,0.00013471559,0.000033760483,0.0008567995,0.00004732319,0.000058053734,0.0019607977],"study_design_scores_gemma":[0.00007798809,0.00212503,0.9915279,0.000015424737,0.0001087242,0.0041674785,0.0005088281,0.0003747808,0.00045895943,0.000030963383,0.0005928172,0.000011092195],"about_ca_topic_score_codex":0.003066654,"about_ca_topic_score_gemma":0.0023154137,"teacher_disagreement_score":0.003066654,"about_ca_system_score_codex":0.00043690353,"about_ca_system_score_gemma":0.0005087735,"threshold_uncertainty_score":0.009322703},"labels":[],"label_agreement":null},{"id":"W3096603839","doi":"10.1128/jcm.01562-20","title":"Approach to Assessment of New Swabs and Viral Transport Media for SARS-CoV-2 Testing","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver Coastal Health","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Pandemic; Coronavirus; Economic shortage; 2019-20 coronavirus outbreak; Medicine; Virology; Diagnostic test; Personal protective equipment; Intensive care medicine; Emergency medicine; Disease; Infectious disease (medical specialty); Pathology; Outbreak","score_opus":0.2583491972388437,"score_gpt":0.443831240619378,"score_spread":0.1854820433805343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096603839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5547488,0.003983317,0.36140555,0.004154967,0.0012349252,0.024166202,0.004258114,0.0021339834,0.043914188],"genre_scores_gemma":[0.37709495,0.0023530105,0.59312296,0.0021747558,0.00019937477,0.0061088707,0.0023949319,0.00017339451,0.016377721],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9906736,0.002150987,0.0009134958,0.0011033422,0.004810414,0.0003481601],"domain_scores_gemma":[0.9944254,0.00062834803,0.0007895205,0.00034664938,0.0035038486,0.00030620463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004966716,0.0016113474,0.0007702935,0.00411336,0.0013340648,0.0024733464,0.002315124,0.0018304016,0.0030224333],"category_scores_gemma":[0.0066584647,0.0008454867,0.0008432789,0.001365214,0.000999975,0.0012706346,0.0026643279,0.0013631774,0.0021329506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016796197,0.0027111927,0.10297412,0.0012306978,0.00017948539,0.001175498,0.0021660218,0.001439769,0.7275238,0.002110065,0.0037726697,0.15303697],"study_design_scores_gemma":[0.00025537782,0.0144240605,0.14517865,0.00071323826,0.0004886129,0.006159714,0.0074990024,0.01749678,0.7293677,0.0035488512,0.07451288,0.00035511973],"about_ca_topic_score_codex":0.008237278,"about_ca_topic_score_gemma":0.015401945,"teacher_disagreement_score":0.008237278,"about_ca_system_score_codex":0.0016943822,"about_ca_system_score_gemma":0.0036326593,"threshold_uncertainty_score":0.026266873},"labels":[],"label_agreement":null},{"id":"W3096972674","doi":"10.1128/jcm.01731-20","title":"Highly Sensitive and Specific Multiplex Antibody Assays To Quantify Immunoglobulins M, A, and G against SARS-CoV-2 Antigens","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases; Ministerio de Ciencia e Innovación","keywords":"Multiplex; Virology; Serology; Antibody; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Antigen; Immunology; Pandemic; Coronavirus disease 2019 (COVID-19); Biology; Medicine; Disease; Infectious disease (medical specialty); Bioinformatics","score_opus":0.12607346634009156,"score_gpt":0.40717235340150365,"score_spread":0.28109888706141206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096972674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.64841104,0.0075378376,0.33295396,0.00030852962,0.00026744694,0.0008425329,0.0024778938,0.0023041246,0.0048965635],"genre_scores_gemma":[0.76426005,0.0023093016,0.2257124,0.00057206885,0.00016249306,0.0009197355,0.0017803779,0.000048025075,0.0042353836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977791,0.00052896177,0.00014939945,0.00056436716,0.00078303454,0.00019521538],"domain_scores_gemma":[0.99903667,0.00031797978,0.00024044435,0.00007915467,0.00026919297,0.000056622022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023547637,0.0016320358,0.00079023634,0.0014127769,0.00026092475,0.0006881479,0.0007485985,0.0009689175,0.0009352575],"category_scores_gemma":[0.0014433704,0.00041758997,0.0006254534,0.0008394843,0.00040017732,0.00055745087,0.0006264873,0.0007604343,0.0006607894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014634356,0.00022047393,0.009283826,0.00027726035,0.000105109575,0.00004752303,0.000082466526,0.0012564802,0.9532681,0.0002649502,0.0005821072,0.034465287],"study_design_scores_gemma":[0.000042458243,0.001289085,0.026228795,0.000050350638,0.00012183978,0.0006373728,0.00009951104,0.024658814,0.94163793,0.00061704154,0.0045526554,0.00006414837],"about_ca_topic_score_codex":0.00037476758,"about_ca_topic_score_gemma":0.00067323574,"teacher_disagreement_score":0.0023547637,"about_ca_system_score_codex":0.0004109398,"about_ca_system_score_gemma":0.0002250798,"threshold_uncertainty_score":0.012453377},"labels":[],"label_agreement":null},{"id":"W3097423087","doi":"10.1128/jcm.02290-20","title":"Evaluation of Surrogate Tests for the Presence of <i>mecA</i> -Mediated Methicillin Resistance in Staphylococcus capitis, Staphylococcus haemolyticus, Staphylococcus hominis, and Staphylococcus warneri","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Staphylococcus haemolyticus; Cefoxitin; Staphylococcus; Microbiology; Staphylococcus aureus; Broth microdilution; Staphylococcus lugdunensis; Biology; Antibiotics; Bacteria; Minimum inhibitory concentration; Genetics","score_opus":0.09515571917436326,"score_gpt":0.38744930057276905,"score_spread":0.2922935813984058,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097423087","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9602422,0.00448503,0.024497023,0.0005796838,0.00022949887,0.0003627366,0.001599375,0.00027677303,0.007727666],"genre_scores_gemma":[0.97476155,0.00089491194,0.021337183,0.00024440567,0.0000422369,0.00019697763,0.0012526513,0.000028097767,0.0012420103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9943463,0.0026332326,0.0005358913,0.00053706294,0.0016464228,0.0003009692],"domain_scores_gemma":[0.99385035,0.0019705032,0.0017260433,0.00037473888,0.0014961712,0.00058214506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0035394414,0.0010467018,0.0008686922,0.0014566047,0.00029485617,0.0013044216,0.0006676869,0.00082746154,0.0011583257],"category_scores_gemma":[0.008380397,0.00031811753,0.00057275535,0.0009874151,0.00073546,0.0006420669,0.0006125444,0.0008247367,0.0006515473],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035018083,0.0012131698,0.18051803,0.00068254897,0.00014564648,0.0009118066,0.00054807955,0.0007419347,0.780649,0.0007773233,0.00090090925,0.029409861],"study_design_scores_gemma":[0.0001315748,0.012594374,0.14672746,0.00033755455,0.00021588775,0.0074389586,0.0011708015,0.0069777663,0.81894416,0.0007084305,0.004669728,0.00008335041],"about_ca_topic_score_codex":0.0006874717,"about_ca_topic_score_gemma":0.0009117207,"teacher_disagreement_score":0.0035394414,"about_ca_system_score_codex":0.00036882987,"about_ca_system_score_gemma":0.0005842352,"threshold_uncertainty_score":0.0187186},"labels":[],"label_agreement":null},{"id":"W3109871469","doi":"10.1128/jcm.01969-20","title":"Benefits Derived from Full Laboratory Automation in Microbiology: a Tale of Four Laboratories","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hamilton Regional Laboratory Medicine Program","funders":"","keywords":"Laboratory automation; Clinical microbiology; Microbiology; Automation; Biology; Engineering","score_opus":0.04061318842744029,"score_gpt":0.31356588540623415,"score_spread":0.2729526969787939,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3109871469","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53452516,0.04239482,0.07954235,0.27486202,0.0046501323,0.0010981259,0.00063179666,0.003879176,0.0584164],"genre_scores_gemma":[0.9155769,0.0059021297,0.049843792,0.020112673,0.0013850172,0.00030129595,0.00028944222,0.00039108942,0.0061976346],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9350746,0.035290603,0.0040606707,0.0023581586,0.018526018,0.0046898387],"domain_scores_gemma":[0.90062255,0.03373354,0.010421968,0.016432576,0.027888995,0.010900286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06022587,0.0014133697,0.00096299715,0.003269377,0.0039626765,0.011682252,0.0032383231,0.0029646507,0.00435962],"category_scores_gemma":[0.059452668,0.00078344665,0.0019146913,0.003025596,0.00638237,0.012704416,0.013996926,0.004903758,0.0018581633],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024165139,0.0008734778,0.09416832,0.0018344315,0.00051198254,0.0009897044,0.003938975,0.0026188507,0.009738337,0.016650992,0.025395349,0.84086305],"study_design_scores_gemma":[0.0008745106,0.018761843,0.36093748,0.0065367185,0.0019051149,0.00847135,0.03661478,0.006236925,0.034385182,0.1034881,0.42016044,0.0016276323],"about_ca_topic_score_codex":0.002810041,"about_ca_topic_score_gemma":0.0031451434,"teacher_disagreement_score":0.06022587,"about_ca_system_score_codex":0.0048943246,"about_ca_system_score_gemma":0.009709939,"threshold_uncertainty_score":0.31850868},"labels":[],"label_agreement":null},{"id":"W3110683019","doi":"10.1128/jcm.02078-20","title":"Development of a Duplex Real-Time PCR Assay for the Differentiation of Blastomyces dermatitidis and <i>Blastomyces gilchristii</i> and a Retrospective Analysis of Culture and Primary Specimens from Blastomycosis Cases from New York (2005 to 2019)","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"Centers for Disease Control and Prevention; National Science Foundation","keywords":"Blastomyces; Blastomyces dermatitidis; Blastomycosis; Biology; Polymerase chain reaction; Microbiology; Pathology; Medicine; Immunology; Genetics","score_opus":0.038483030835095015,"score_gpt":0.31149696159102885,"score_spread":0.27301393075593383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3110683019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8837192,0.0017716148,0.10545412,0.00023323073,0.00021365871,0.0012817524,0.002736958,0.0006055355,0.0039839065],"genre_scores_gemma":[0.7873173,0.00090146123,0.1988619,0.00037756423,0.000060285784,0.0017111117,0.005049959,0.00006099246,0.0056594657],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809104,0.00032369955,0.00019927626,0.00063060893,0.0006163417,0.00013898518],"domain_scores_gemma":[0.99889743,0.00039398903,0.00021416583,0.000082780534,0.00032848894,0.000083003775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012390417,0.0004396237,0.0005110866,0.00088904257,0.00021653392,0.0006012388,0.00037532908,0.00064646604,0.0012297414],"category_scores_gemma":[0.0021017392,0.00042200575,0.00035069443,0.00046191752,0.00042372456,0.00031955985,0.00024363857,0.0005872905,0.0005636036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043175754,0.00021460885,0.036621414,0.00018227709,0.00003228056,0.00027579145,0.00029732106,0.00047474742,0.93974465,0.00029451394,0.00039084913,0.021039791],"study_design_scores_gemma":[0.00013213129,0.0027332795,0.12055729,0.00007637122,0.0001803905,0.0032869526,0.00036955162,0.010629074,0.8471038,0.00022944067,0.014618531,0.00008323749],"about_ca_topic_score_codex":0.001714595,"about_ca_topic_score_gemma":0.0034062979,"teacher_disagreement_score":0.001714595,"about_ca_system_score_codex":0.0005309304,"about_ca_system_score_gemma":0.00076701393,"threshold_uncertainty_score":0.006552756},"labels":[],"label_agreement":null},{"id":"W3112390401","doi":"10.1128/jcm.02511-20","title":"Multicenter Evaluation of the Clinical Performance and the Neutralizing Antibody Activity Prediction Properties of 10 High-Throughput Serological Assays Used in Clinical Laboratories","year":2020,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier universitaire de Québec; Cégep de Lévis; Université de Montréal; Centre Hospitalier de l’Université de Montréal; Centre Hospitalier Universitaire de Sherbrooke; Hôpital du Sacré-Cœur de Montréal; McGill University Health Centre; Cégep de Rimouski; Centre intégré universitaire de santé et de services sociaux de la Mauricie-et-du-Centre-du-Québec; Héma-Québec; Institut National de Santé Publique du Québec; Centre Hospitalier Universitaire Sainte-Justine","funders":"Fonds de Recherche du Québec - Santé; Mitacs","keywords":"Serology; Coronavirus disease 2019 (COVID-19); Virology; Pandemic; Coronavirus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Medicine; Epidemiology; 2019-20 coronavirus outbreak; Immunology; Population; Immunity; Antibody; Disease; Internal medicine; Outbreak; Infectious disease (medical specialty); Immune system; Environmental health","score_opus":0.22422568609459756,"score_gpt":0.46856501861884714,"score_spread":0.24433933252424958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112390401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920826,0.0003785657,0.00645556,0.000041484567,0.00002374417,0.00019320332,0.00024793393,0.00014229205,0.00043455703],"genre_scores_gemma":[0.99266386,0.00008262105,0.0063015823,0.000044008324,0.000021649483,0.000107389256,0.0006068046,0.0000125613215,0.00015956198],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9880242,0.0061730333,0.0007905929,0.002314744,0.0023296797,0.00036772926],"domain_scores_gemma":[0.9866649,0.0045997165,0.0025508984,0.002074654,0.0035707972,0.0005390542],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.017387971,0.0012249962,0.0005215018,0.00080617506,0.0004238506,0.0008218341,0.00061524106,0.0008045654,0.0003613576],"category_scores_gemma":[0.013072323,0.00030200672,0.0005289357,0.00074888207,0.0008159124,0.0004716444,0.0006267241,0.00059957727,0.00029609993],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068597305,0.00532118,0.6881912,0.000298347,0.0008399385,0.00020576079,0.0012110817,0.004362456,0.2102915,0.00025953227,0.0008201864,0.081339106],"study_design_scores_gemma":[0.0005609581,0.030941183,0.7981066,0.00004643435,0.0005592989,0.0014417694,0.00039761764,0.014204292,0.15155624,0.0001277357,0.001978414,0.0000795045],"about_ca_topic_score_codex":0.00067997444,"about_ca_topic_score_gemma":0.00047723844,"teacher_disagreement_score":0.017387971,"about_ca_system_score_codex":0.00052872876,"about_ca_system_score_gemma":0.00053112325,"threshold_uncertainty_score":0.09195751},"labels":[],"label_agreement":null},{"id":"W3121164647","doi":"10.1128/jcm.02438-20","title":"A New SARS-CoV-2 Dual-Purpose Serology Test: Highly Accurate Infection Tracing and Neutralizing Antibody Response Detection","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":148,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton; University of Alberta","funders":"","keywords":"Serology; Antibody; Virology; Neutralizing antibody; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Biology; Coronavirus; Receptor; Severe acute respiratory syndrome coronavirus; Coronavirus disease 2019 (COVID-19); Immunology; Medicine; Pathology; Infectious disease (medical specialty)","score_opus":0.0908015880227508,"score_gpt":0.45182995810855836,"score_spread":0.36102837008580757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3121164647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6295439,0.005197133,0.33181742,0.0009815107,0.0010780079,0.0018254452,0.0066147936,0.008608706,0.0143331615],"genre_scores_gemma":[0.76601344,0.0012223995,0.21435359,0.0014127311,0.0003190748,0.00080380647,0.0057512945,0.0001871588,0.009936512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9950681,0.00094237144,0.00020622788,0.0009007745,0.0026939635,0.00018843242],"domain_scores_gemma":[0.99801564,0.00051558,0.00039788918,0.00017404206,0.00066988927,0.00022694426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019519067,0.001206242,0.0010915467,0.0020266783,0.00029691547,0.0010773194,0.0010348393,0.0016275692,0.0020179488],"category_scores_gemma":[0.0027660565,0.0005600252,0.00067915383,0.00073303195,0.00038055438,0.00084013445,0.0010003614,0.0011788527,0.0013053027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023166318,0.0010029977,0.06234207,0.000513107,0.00020393214,0.00036340515,0.00014479073,0.0009966632,0.8004017,0.00067311636,0.004608374,0.12643333],"study_design_scores_gemma":[0.0004752783,0.0070863487,0.12081071,0.00011297089,0.00038036628,0.013024615,0.00013321383,0.04645445,0.78672296,0.0006224252,0.023932327,0.0002443522],"about_ca_topic_score_codex":0.00065834314,"about_ca_topic_score_gemma":0.0012818817,"teacher_disagreement_score":0.0020266783,"about_ca_system_score_codex":0.0004134556,"about_ca_system_score_gemma":0.0005965735,"threshold_uncertainty_score":0.01032275},"labels":[],"label_agreement":null},{"id":"W3121444821","doi":"10.1128/jcm.03149-20","title":"Quantitative Measurement of Anti-SARS-CoV-2 Antibodies: Analytical and Clinical Evaluation","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); Serology; Virology; Antibody; Coronavirus; 2019-20 coronavirus outbreak; Betacoronavirus; Medicine; Coronaviridae; Immunology; Sars virus; Disease; Pathology; Infectious disease (medical specialty); Outbreak","score_opus":0.3324841859549542,"score_gpt":0.5434767858961548,"score_spread":0.21099259994120056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3121444821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95648175,0.004943482,0.03004243,0.00018251767,0.000092567025,0.00055107207,0.0012805316,0.00034533575,0.006080263],"genre_scores_gemma":[0.9774834,0.0007635037,0.019195296,0.00021419433,0.000051920273,0.0003447425,0.00094656844,0.00004364685,0.0009567043],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99215865,0.0027125333,0.0007213874,0.0010267572,0.0031720228,0.00020869916],"domain_scores_gemma":[0.99325025,0.0023844927,0.0010840887,0.0003360269,0.002647663,0.00029749674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006004597,0.0010495256,0.00070441037,0.0024627366,0.00024855716,0.0008031704,0.0006815549,0.00084757304,0.0008178186],"category_scores_gemma":[0.007918855,0.00039560875,0.00028649028,0.0017975321,0.00085960026,0.0004976661,0.00033139327,0.0006677907,0.0005101784],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005035076,0.0012443832,0.72622985,0.0007260555,0.00028573794,0.0014238904,0.00093961257,0.0020923666,0.20637177,0.00050245563,0.0013881132,0.053760715],"study_design_scores_gemma":[0.00017781874,0.008958777,0.8451149,0.000076333956,0.0001812965,0.008070293,0.00061487156,0.014119932,0.118358955,0.00032661582,0.003902754,0.0000975043],"about_ca_topic_score_codex":0.0007093418,"about_ca_topic_score_gemma":0.0006449288,"teacher_disagreement_score":0.006004597,"about_ca_system_score_codex":0.00041739774,"about_ca_system_score_gemma":0.00037653485,"threshold_uncertainty_score":0.031755745},"labels":[],"label_agreement":null},{"id":"W3122657984","doi":"10.1128/jcm.02881-20","title":"Performance of Saliva, Oropharyngeal Swabs, and Nasal Swabs for SARS-CoV-2 Molecular Detection: a Systematic Review and Meta-analysis","year":2021,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":312,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Saliva; Coronavirus disease 2019 (COVID-19); Medicine; Meta-analysis; 2019-20 coronavirus outbreak; Economic shortage; Virology; Biology; Internal medicine; Outbreak","score_opus":0.20843902793669206,"score_gpt":0.46099734981902213,"score_spread":0.2525583218823301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122657984","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026534903,0.9962597,0.00019994372,0.00014720715,0.00007246124,0.00011287571,0.00038572995,0.000011912668,0.00015670611],"genre_scores_gemma":[0.083283804,0.91289556,0.0011548568,0.0008584004,0.0002100876,0.0005723387,0.00080437027,0.000029253171,0.00019131394],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9910919,0.0032343122,0.0032066065,0.0010788533,0.0010905229,0.0002978291],"domain_scores_gemma":[0.96263045,0.029476404,0.004188202,0.00076962216,0.0026377402,0.00029764086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013470976,0.0024064516,0.017251443,0.0075336597,0.00067660527,0.00359439,0.0023072923,0.0021431616,0.0032698088],"category_scores_gemma":[0.041882128,0.0013416787,0.031589363,0.00804767,0.0008548383,0.0019761126,0.0014101679,0.0014976178,0.00035066786],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013966119,0.00002787791,0.0053331046,0.6572704,0.31708205,0.00011871496,0.000120855686,0.0003586933,0.00026274266,0.0001383684,0.0008657585,0.0170248],"study_design_scores_gemma":[0.00031449474,0.00020611953,0.0055296044,0.072076686,0.91860914,0.00015191954,0.00007542663,0.00014676599,0.00014633818,0.0002171559,0.002493558,0.000032821867],"about_ca_topic_score_codex":0.0070452006,"about_ca_topic_score_gemma":0.015668664,"teacher_disagreement_score":0.017251443,"about_ca_system_score_codex":0.0026280917,"about_ca_system_score_gemma":0.0043571433,"threshold_uncertainty_score":0.07124221},"labels":[],"label_agreement":null},{"id":"W3122970113","doi":"10.1128/jcm.02427-20","title":"Self-Collected Saline Gargle Samples as an Alternative to Health Care Worker-Collected Nasopharyngeal Swabs for COVID-19 Diagnosis in Outpatients","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; McMaster University; BC Centre for Disease Control; B.C. Women's Hospital & Health Centre; University of British Columbia","funders":"","keywords":"Medicine; Saliva; Coronavirus disease 2019 (COVID-19); Saline; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Internal medicine; 2019-20 coronavirus outbreak; Pathology; Outbreak; Disease; Infectious disease (medical specialty)","score_opus":0.11459836146485375,"score_gpt":0.454444043280441,"score_spread":0.3398456818155873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3122970113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9995672,0.00007097042,0.00012144959,0.000014357482,0.000003535202,0.000027021028,0.000026114907,0.0000052380005,0.00016403398],"genre_scores_gemma":[0.99857736,0.0000697056,0.000999693,0.00005424222,0.000012634138,0.000033395616,0.00010130661,0.0000044889434,0.00014723318],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99709535,0.0014250966,0.00019664635,0.00026893956,0.00084876723,0.00016518525],"domain_scores_gemma":[0.99684924,0.001070664,0.0009587751,0.00016543895,0.0006498381,0.00030607288],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032380016,0.00047411342,0.00064376474,0.0004098174,0.00025901868,0.0007608794,0.00031327846,0.000519574,0.00076004275],"category_scores_gemma":[0.008740805,0.00035214558,0.0003446706,0.00022197253,0.0002829538,0.00042474284,0.00053198787,0.00036190165,0.00028952278],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022705675,0.0009429671,0.9596789,0.00012606116,0.000055426484,0.00031908424,0.0022909853,0.00012167859,0.014996454,0.000015053574,0.00017565148,0.0190071],"study_design_scores_gemma":[0.00008026207,0.011915124,0.97735286,0.000050163108,0.000074445874,0.0009021264,0.002132663,0.0015281589,0.005376096,0.000024852818,0.0005355341,0.000027657083],"about_ca_topic_score_codex":0.0016809658,"about_ca_topic_score_gemma":0.002727748,"teacher_disagreement_score":0.0032380016,"about_ca_system_score_codex":0.00026548558,"about_ca_system_score_gemma":0.00026936512,"threshold_uncertainty_score":0.017124414},"labels":[],"label_agreement":null},{"id":"W3139132142","doi":"10.1128/jcm.03161-20","title":"Evaluation of Diagnostic Accuracy of Eight Commercial Assays for the Detection of Measles Virus-Specific IgM Antibodies","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Parvovirus B19 Infection Studies","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Hospital Edmonton; University of Alberta; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Rubella; Measles; Measles virus; Medicine; Virology; Immunoglobulin M; Immunoassay; Antibody; Immunology; Immunoglobulin G; Vaccination","score_opus":0.22589610794170345,"score_gpt":0.4705065370098179,"score_spread":0.24461042906811448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139132142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99592674,0.00097221363,0.0017339822,0.000039913517,0.000023228762,0.00004091486,0.00010463311,0.000046796427,0.0011115468],"genre_scores_gemma":[0.99626225,0.00013307197,0.0032733756,0.000024072322,0.000011689808,0.00001625745,0.00016608874,0.0000032415765,0.0001100038],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99731904,0.0010302158,0.00032899927,0.00037024473,0.00079876865,0.00015272641],"domain_scores_gemma":[0.99179405,0.005541537,0.00069737004,0.00039252703,0.0013368498,0.00023766929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0039397967,0.00067170465,0.00028055368,0.00170853,0.0002473385,0.00046255396,0.00046860808,0.0006069506,0.00057400274],"category_scores_gemma":[0.00965731,0.00036419037,0.00027011245,0.00054831273,0.00042515568,0.0003507374,0.00031786313,0.00036736834,0.00032916933],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006941463,0.00022583954,0.95175505,0.00011331941,0.0001080721,0.000216268,0.0002762804,0.00019107929,0.018719606,0.00004707405,0.00014789183,0.02750548],"study_design_scores_gemma":[0.00016241417,0.0036445484,0.9489977,0.000069569855,0.00028183855,0.005060953,0.00042196515,0.00705379,0.03276652,0.00009896059,0.0014134811,0.000028269309],"about_ca_topic_score_codex":0.0005889898,"about_ca_topic_score_gemma":0.0009141484,"teacher_disagreement_score":0.0039397967,"about_ca_system_score_codex":0.00028486454,"about_ca_system_score_gemma":0.00018784415,"threshold_uncertainty_score":0.020835876},"labels":[],"label_agreement":null},{"id":"W3139351361","doi":"10.1128/jcm.02470-20","title":"Phenotypic and Genomic Profiling of Staphylococcus argenteus in Canada and the United States and Recommendations for Clinical Result Reporting","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Biology; Multilocus sequence typing; Staphylococcus aureus; Genetics; Bacterial taxonomy; Microbiology; Virulence; Genotype; 16S ribosomal RNA; Gene; Bacteria","score_opus":0.0843073657788697,"score_gpt":0.4032378659747257,"score_spread":0.318930500195856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139351361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7547996,0.029160947,0.008918296,0.091440886,0.001163612,0.000986508,0.015343291,0.00071597466,0.0974709],"genre_scores_gemma":[0.93828875,0.01892266,0.0187886,0.00957819,0.00022226272,0.00011942323,0.0049841427,0.00012395074,0.008972055],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99618536,0.00038894618,0.00038710004,0.00017739962,0.0024191248,0.00044195267],"domain_scores_gemma":[0.9903735,0.00062044844,0.00072555966,0.00014842062,0.0072106495,0.00092141697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025860611,0.00039536651,0.00032683654,0.00425263,0.002106041,0.001715035,0.0013067015,0.00089329836,0.0014426962],"category_scores_gemma":[0.008965719,0.00022498646,0.0003712481,0.003436869,0.0009423488,0.0003907927,0.000596861,0.00077202305,0.0003156857],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057857065,0.00025992043,0.7574743,0.0005866756,0.00007050558,0.006284181,0.003160246,0.001151846,0.014291403,0.0021596723,0.06698475,0.14699793],"study_design_scores_gemma":[0.000021459873,0.0001634813,0.9131863,0.00094350905,0.00013119017,0.004029399,0.011832867,0.0016424572,0.0067646382,0.0004496343,0.060758434,0.00007656853],"about_ca_topic_score_codex":0.9514139,"about_ca_topic_score_gemma":0.9655979,"teacher_disagreement_score":0.04858607,"about_ca_system_score_codex":0.015625391,"about_ca_system_score_gemma":0.03376832,"threshold_uncertainty_score":0.11337066},"labels":[],"label_agreement":null},{"id":"W3144878975","doi":"10.1128/jcm.03262-13","title":"Absence of Pleocytosis Alone Is Insufficient To Exclude Encephalitis Caused by Herpes Simplex Virus in Children","year":2014,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Infectious Encephalopathies and Encephalitis","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Montreal Children's Hospital","funders":"","keywords":"Encephalitis; Virology; Pleocytosis; Herpes simplex virus; Medicine; Alphaherpesvirinae; Virus; Herpes Genitalis; Viral disease; Herpesviridae; Biology; Meningitis; Immunology; Pediatrics; Genital herpes","score_opus":0.031983304842510794,"score_gpt":0.34005760987561157,"score_spread":0.3080743050331008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3144878975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.48495975,0.03547651,0.002403077,0.4271359,0.009556652,0.00016239815,0.00067562377,0.0002811202,0.039348878],"genre_scores_gemma":[0.8995584,0.010521386,0.001569843,0.06733639,0.017921649,0.00005964651,0.0002596133,0.000074995434,0.0026980198],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.99747306,0.00088267133,0.0005332332,0.00029092288,0.00036805467,0.000452126],"domain_scores_gemma":[0.98947453,0.006260685,0.0016339357,0.00036437975,0.0009818233,0.0012846538],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001609092,0.0008207917,0.0011500157,0.0014852188,0.0015026769,0.0017414056,0.0014980043,0.008547696,0.0018827281],"category_scores_gemma":[0.020296225,0.00078938896,0.00063512375,0.0010259912,0.0023615304,0.0019810938,0.0008471657,0.006691079,0.0014913455],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035501755,0.00012501821,0.15429075,0.0004339393,0.000074784744,0.7589605,0.0010537854,0.00031706892,0.0020177772,0.0010710872,0.06641434,0.014885977],"study_design_scores_gemma":[0.000107480424,0.00022419114,0.064479664,0.000856997,0.000096282645,0.89533305,0.0018268813,0.0012853844,0.0014947047,0.0024468687,0.031762127,0.00008638197],"about_ca_topic_score_codex":0.0024029878,"about_ca_topic_score_gemma":0.003524554,"teacher_disagreement_score":0.008547696,"about_ca_system_score_codex":0.0019305483,"about_ca_system_score_gemma":0.0010119524,"threshold_uncertainty_score":0.014007211},"labels":[],"label_agreement":null},{"id":"W3146171724","doi":"10.1128/jcm.00233-12","title":"Reply to “Evaluation of Mycobacterial Interspersed Repetitive-Unit–Variable-Number Tandem-Repeat Genotyping as Performed in Laboratories in Canada, France, and the United States”","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Genotyping; Variable number tandem repeat; Tandem repeat; Virology; Biology; Medicine; Genetics; Genotype; Genome","score_opus":0.05517099409567785,"score_gpt":0.3966277577993793,"score_spread":0.3414567637037015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3146171724","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00057951134,0.0021325985,0.00028839672,0.94224125,0.053936627,0.00001431507,0.00012506735,0.000050820203,0.00063142326],"genre_scores_gemma":[0.0031600632,0.0007362062,0.00029172972,0.96104145,0.032498084,0.000022621418,0.000050626368,0.000022926872,0.0021762482],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99677724,0.0009863756,0.00058383273,0.00051680364,0.00079013366,0.00034556357],"domain_scores_gemma":[0.98871267,0.0048130797,0.0010399959,0.00035021154,0.003982857,0.0011011943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0049996814,0.0010913408,0.0011621121,0.000936517,0.0018951874,0.001808004,0.0024776938,0.03106092,0.0038753727],"category_scores_gemma":[0.026180549,0.0007666795,0.0011600102,0.000864502,0.0020854324,0.0031932008,0.0013480464,0.02457931,0.0049101124],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009777966,0.000022634038,0.000849932,0.000093838746,0.00002146216,0.0008696433,0.00012748664,0.00004564399,0.00032588124,0.0005689665,0.99230677,0.0046699964],"study_design_scores_gemma":[0.00008771356,0.00013598954,0.004416936,0.0004306581,0.00007659156,0.0040041995,0.0006649908,0.0005053009,0.0011486143,0.0031204743,0.9852483,0.00016025423],"about_ca_topic_score_codex":0.0037884223,"about_ca_topic_score_gemma":0.004905259,"teacher_disagreement_score":0.03106092,"about_ca_system_score_codex":0.0023266322,"about_ca_system_score_gemma":0.0023290939,"threshold_uncertainty_score":0.026441157},"labels":[],"label_agreement":null},{"id":"W3157569124","doi":"10.1128/jcm.00044-21","title":"Application of Four Genotyping Methods to Mycoplasma bovis Isolates Derived from Western Canadian Feedlot Cattle","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Saskatchewan","funders":"Beef Cattle Research Council; Ministry of Agriculture - Saskatchewan","keywords":"Multilocus sequence typing; Biology; Genotyping; Phylogenetic tree; Genetics; Typing; Genotype; Computational biology; Gene","score_opus":0.06182816727969697,"score_gpt":0.4107799546062455,"score_spread":0.3489517873265485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3157569124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9434123,0.0015669212,0.037118427,0.00024003266,0.0000753801,0.00083742733,0.0064105974,0.0004965313,0.009842438],"genre_scores_gemma":[0.82226086,0.0008538307,0.16323225,0.00014602892,0.000014257236,0.00027773064,0.005817014,0.00010645908,0.007291589],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851567,0.00014403435,0.00012347646,0.00035399265,0.0005994551,0.00026347875],"domain_scores_gemma":[0.9986368,0.00029457756,0.00020550085,0.0001315445,0.00060038315,0.0001312335],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015983591,0.0008471431,0.0005439283,0.0021151921,0.001559552,0.00093094475,0.00070617103,0.0007347941,0.0013699268],"category_scores_gemma":[0.003314396,0.00028853107,0.00056760694,0.001934205,0.00046221478,0.00019625598,0.00050773483,0.0004743211,0.00046183163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086515024,0.00025167622,0.32463756,0.0006756969,0.00033672297,0.00047861342,0.0022997775,0.0014758789,0.50248104,0.0004925143,0.0015579322,0.16444755],"study_design_scores_gemma":[0.000043145177,0.00043693307,0.8377827,0.00011670859,0.00036657348,0.00087418454,0.0010656412,0.0039848764,0.13837925,0.00022914067,0.016643014,0.00007791569],"about_ca_topic_score_codex":0.4662949,"about_ca_topic_score_gemma":0.76607347,"teacher_disagreement_score":0.5337051,"about_ca_system_score_codex":0.0026011446,"about_ca_system_score_gemma":0.002861821,"threshold_uncertainty_score":0.9271616},"labels":[],"label_agreement":null},{"id":"W3160959437","doi":"10.1128/jcm.00706-21","title":"Progress toward Developing Sensitive Non-Sputum-Based Tuberculosis Diagnostic Tests: the Promise of Urine Cell-Free DNA","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; Fonds de Recherche du Québec - Santé","keywords":"Sputum; Urine; Medicine; Tuberculosis; Context (archaeology); Internal medicine; Mycobacterium tuberculosis; Clinical microbiology; Urinary system; Immunology; Pathology; Microbiology; Biology","score_opus":0.05402417269587191,"score_gpt":0.39031152700682115,"score_spread":0.33628735431094925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160959437","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.10452318,0.16536619,0.023902433,0.6627931,0.030348552,0.00046102612,0.0016270656,0.00024236931,0.010735987],"genre_scores_gemma":[0.44159243,0.10250703,0.045756448,0.3726455,0.0227779,0.0005300748,0.00089621416,0.00020158417,0.013092964],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98425794,0.009721332,0.001241249,0.001398875,0.0029726913,0.00040780168],"domain_scores_gemma":[0.9668754,0.023765912,0.0020639114,0.0006663751,0.0059970156,0.00063142227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.024558563,0.00040365814,0.0006378818,0.00084299897,0.0007733624,0.0035046157,0.0012864899,0.0038325782,0.0007213122],"category_scores_gemma":[0.039732795,0.00027755077,0.0007014915,0.00057721796,0.0022369067,0.0013232966,0.00082687195,0.00251797,0.00046635058],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090629136,0.0002181127,0.13546392,0.008070811,0.0006915418,0.0014264275,0.008602869,0.00075066154,0.013853518,0.013660084,0.21832763,0.59802806],"study_design_scores_gemma":[0.00044056357,0.0019566342,0.17255865,0.009716129,0.0013320175,0.0031905177,0.0069135544,0.002252925,0.055211097,0.01656708,0.72936124,0.0004996283],"about_ca_topic_score_codex":0.008571065,"about_ca_topic_score_gemma":0.022323703,"teacher_disagreement_score":0.024558563,"about_ca_system_score_codex":0.0014233475,"about_ca_system_score_gemma":0.0046773073,"threshold_uncertainty_score":0.12987965},"labels":[],"label_agreement":null},{"id":"W3164229396","doi":"10.1128/jcm.00259-21","title":"Validation of a Gradient Diffusion Method (Etest) for Testing of Antimicrobial Susceptibility of Aerococcus urinae to Fluoroquinolones","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Infective Endocarditis Diagnosis and Management","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital du Sacré-Cœur de Montréal; Hôpital Maisonneuve-Rosemont; Centre Hospitalier de l’Université de Montréal; Centre hospitalier de l'Université Laval; Université Laval; Université de Montréal; Institut National de Santé Publique du Québec; Centre hospitalier universitaire de Québec","funders":"","keywords":"Etest; Ciprofloxacin; Broth microdilution; Levofloxacin; Microbiology; Medicine; Agar dilution; Antimicrobial; Biology; Minimum inhibitory concentration; Antibiotics","score_opus":0.08431910397074925,"score_gpt":0.41918474684782553,"score_spread":0.33486564287707626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164229396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.835867,0.008982316,0.13324478,0.0014963446,0.00083393714,0.0028286653,0.006723496,0.0012444181,0.008779086],"genre_scores_gemma":[0.74477947,0.0045324396,0.23388815,0.0009785398,0.00013490122,0.0010987958,0.006935959,0.00025387696,0.0073978864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98083407,0.005627564,0.0026823895,0.0026453363,0.007613262,0.00059733447],"domain_scores_gemma":[0.9890431,0.002424138,0.0013766884,0.00073248293,0.0060669365,0.00035670373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009479286,0.0013657835,0.000995094,0.0023536033,0.0007450244,0.0014821636,0.0015412559,0.0012981923,0.0010319612],"category_scores_gemma":[0.013111888,0.0004882309,0.00084813486,0.001515383,0.00088546606,0.0007878979,0.0014622193,0.0008596751,0.001241082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019558747,0.0010337324,0.137859,0.0014278254,0.00033183818,0.0005052064,0.0015741658,0.0012786324,0.77404064,0.00069219706,0.0020768736,0.077224],"study_design_scores_gemma":[0.00025408683,0.00462393,0.2155879,0.00062692125,0.0006729315,0.004860115,0.0014703652,0.01434295,0.72935396,0.00028908977,0.0276024,0.00031527472],"about_ca_topic_score_codex":0.024326483,"about_ca_topic_score_gemma":0.029549954,"teacher_disagreement_score":0.024326483,"about_ca_system_score_codex":0.00087110425,"about_ca_system_score_gemma":0.0020956276,"threshold_uncertainty_score":0.050131857},"labels":[],"label_agreement":null},{"id":"W3171399071","doi":"10.1128/jcm.00039-21","title":"Zinc Concentration Affects Metallo-Beta-Lactamase Susceptibility Testing of <i>Enterobacterales</i>","year":2021,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Zinc; Microbiology; Beta-lactamase; Biology; Chemistry; Escherichia coli; Biochemistry","score_opus":0.044982126058747435,"score_gpt":0.32881034958989136,"score_spread":0.2838282235311439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3171399071","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13627616,0.005603764,0.0012599184,0.79143906,0.042282294,0.00008349596,0.00040563717,0.00025254628,0.022397166],"genre_scores_gemma":[0.45936847,0.0036039327,0.0017066029,0.46394217,0.049216323,0.000064156644,0.00018821695,0.00014574666,0.021764383],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748886,0.0007363397,0.0004215492,0.0003670903,0.0007129271,0.00027314867],"domain_scores_gemma":[0.9921524,0.0047318353,0.0007972334,0.0003012805,0.001576156,0.0004410497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018068064,0.0004355498,0.00067955465,0.00043986514,0.0009942377,0.0014723865,0.0011924028,0.010877848,0.0018602604],"category_scores_gemma":[0.014409324,0.0002700684,0.0005840757,0.00049606076,0.0009209272,0.0005306645,0.00032960172,0.0044540763,0.001500082],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004137321,0.0008116421,0.061766963,0.0006973673,0.00015757,0.13359581,0.0020040614,0.000881462,0.031768844,0.0027912362,0.6970164,0.0643713],"study_design_scores_gemma":[0.0006050424,0.0045816554,0.093372524,0.00073122914,0.0005494021,0.15788153,0.0033811433,0.00539197,0.065335765,0.006580291,0.66119015,0.0003992764],"about_ca_topic_score_codex":0.0033245508,"about_ca_topic_score_gemma":0.0035250564,"teacher_disagreement_score":0.010877848,"about_ca_system_score_codex":0.0022875082,"about_ca_system_score_gemma":0.00048598688,"threshold_uncertainty_score":0.016597092},"labels":[],"label_agreement":null},{"id":"W3183663658","doi":"10.1128/jcm.01411-21","title":"Multicenter Postimplementation Assessment of the Positive Predictive Value of SARS-CoV-2 Antigen-Based Point-of-Care Tests Used for Screening of Asymptomatic Continuing Care Staff","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 detection and testing","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Calgary Laboratory Services; University of Calgary; University of Alberta","funders":"","keywords":"Asymptomatic; Medicine; Point-of-care testing; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Predictive value; Health care; Point of care; Internal medicine; Coronavirus disease 2019 (COVID-19); Pediatrics; Immunology; Disease; Pathology; Infectious disease (medical specialty)","score_opus":0.0589130131782443,"score_gpt":0.43839954817209903,"score_spread":0.3794865349938547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3183663658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99788886,0.000119857345,0.00021502718,0.00007785131,0.000023365688,0.00029606165,0.00054264325,0.000048778133,0.00078766304],"genre_scores_gemma":[0.99827814,0.00003490956,0.000636033,0.0001035406,0.00002042523,0.00012659241,0.00055153994,0.000006672812,0.00024217484],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9941521,0.0023108423,0.00032855372,0.001150065,0.0014489662,0.0006095497],"domain_scores_gemma":[0.9822782,0.004020998,0.003444446,0.0012186782,0.007161367,0.0018762326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008214357,0.00086016965,0.00041757224,0.000627662,0.0007336805,0.0009091586,0.00092582754,0.0009226051,0.0007135502],"category_scores_gemma":[0.01982549,0.0004315591,0.0003412682,0.0004715601,0.00059159525,0.00057815923,0.00054469664,0.0008463766,0.0002929047],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048346887,0.00212683,0.9716815,0.00005437067,0.00011424129,0.00008857178,0.00065600406,0.00028244618,0.0031896136,0.000025983594,0.0006972666,0.01624841],"study_design_scores_gemma":[0.0003711105,0.018535646,0.9743156,0.000022290658,0.000113248054,0.00015241765,0.0002646252,0.0019983305,0.0033618016,0.000012659852,0.0008323777,0.000019884592],"about_ca_topic_score_codex":0.03267775,"about_ca_topic_score_gemma":0.029898135,"teacher_disagreement_score":0.03267775,"about_ca_system_score_codex":0.002720403,"about_ca_system_score_gemma":0.0020484955,"threshold_uncertainty_score":0.06497508},"labels":[],"label_agreement":null},{"id":"W3185300995","doi":"10.1128/jcm.00986-21","title":"Molecular Epidemiology of Human Sapovirus among Children with Acute Gastroenteritis in Western Canada","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Alberta Children's Hospital; Women and Children’s Health Research Institute; University of Calgary; University of Alberta","funders":"Alberta Innovates - Health Solutions","keywords":"Sapovirus; Genotype; Acute gastroenteritis; Asymptomatic; Epidemiology; Molecular epidemiology; Biology; Virology; Medicine; Outbreak; Norovirus; Pediatrics; Internal medicine; Genetics; Gene","score_opus":0.040508296213638044,"score_gpt":0.39085601941125125,"score_spread":0.3503477231976132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3185300995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99554515,0.0008278579,0.00011364407,0.00012277123,0.000009937374,0.00004561459,0.001487868,0.00001456643,0.0018325051],"genre_scores_gemma":[0.9974286,0.00083532336,0.0002928981,0.0000903778,0.0000041115936,0.000017662549,0.0007783527,0.0000054830994,0.0005472328],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990664,0.000046489964,0.000058746973,0.0001472244,0.0003907457,0.00029043155],"domain_scores_gemma":[0.99869114,0.000054282456,0.00020389233,0.0000209341,0.0006587068,0.0003709589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041687084,0.00051599776,0.00042390553,0.002298745,0.0020246212,0.0013039557,0.00095626566,0.00035685513,0.0010657797],"category_scores_gemma":[0.001112521,0.0003435716,0.00047483866,0.0040196306,0.0010839935,0.0002896741,0.00081791996,0.0004954193,0.0001484507],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043505417,0.00001269855,0.9950289,0.00003227115,0.00002256601,0.0002229053,0.00073605275,0.00010014336,0.0008559383,0.00006220991,0.00039225086,0.002490639],"study_design_scores_gemma":[0.0000025788297,0.000023018856,0.9975489,0.000026376807,0.0000116423835,0.00015511014,0.0014949944,0.0001400272,0.00009189937,0.000009799962,0.0004883893,0.0000072437856],"about_ca_topic_score_codex":0.9912992,"about_ca_topic_score_gemma":0.99203,"teacher_disagreement_score":0.021297747,"about_ca_system_score_codex":0.021297747,"about_ca_system_score_gemma":0.021791674,"threshold_uncertainty_score":0.15452671},"labels":[],"label_agreement":null},{"id":"W3191401219","doi":"10.1128/jcm.00973-21","title":"Identification of Staphylococcus pseudintermedius Isolates from Wound Cultures by Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry Improves Accuracy of Susceptibility Reporting at an Increase in Cost","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Staphylococcus pseudintermedius; Microbiology; Staphylococcus aureus; Coagulase; Staphylococcus; Antibiotics; Staphylococcal infections; Medicine; Biology; Micrococcaceae; Bacteria; Antibacterial agent; Genetics","score_opus":0.023029299890175395,"score_gpt":0.3516336188311518,"score_spread":0.3286043189409764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3191401219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8957611,0.0061139613,0.074943244,0.0032960684,0.0004449726,0.00034829907,0.0048397924,0.0024699646,0.011782609],"genre_scores_gemma":[0.8796097,0.0017986122,0.11120752,0.00047775992,0.00014856263,0.00007406744,0.0022946764,0.00012806106,0.0042609456],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983619,0.0003947825,0.00012132941,0.00030130983,0.0007118844,0.00010880795],"domain_scores_gemma":[0.9975325,0.0006611981,0.00051810825,0.00027759353,0.00085729203,0.00015337892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016649195,0.00070065167,0.00038632646,0.0015960238,0.00041454646,0.0012067098,0.00058894156,0.0007884589,0.0040425886],"category_scores_gemma":[0.0034279684,0.00030363674,0.00041060874,0.00076766027,0.0003667208,0.0007389153,0.0008335293,0.00067766744,0.0027963305],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041266758,0.00029682228,0.046540275,0.0002860124,0.00007116252,0.00050983747,0.00014708475,0.0002738761,0.8474568,0.00026632566,0.0017784785,0.10196067],"study_design_scores_gemma":[0.00003948414,0.0009097988,0.21586925,0.00008170779,0.00008381135,0.0057603996,0.00024647533,0.010935713,0.7491182,0.0006130838,0.01625733,0.00008469471],"about_ca_topic_score_codex":0.0015867196,"about_ca_topic_score_gemma":0.0054989355,"teacher_disagreement_score":0.0040425886,"about_ca_system_score_codex":0.00036185212,"about_ca_system_score_gemma":0.00047865117,"threshold_uncertainty_score":0.013523817},"labels":[],"label_agreement":null},{"id":"W3196178586","doi":"10.1128/jcm.01154-21","title":"Detection and Clinical Implications of Monovalent Rotavirus Vaccine-Derived Virus Strains in Children with Gastroenteritis in Alberta, Canada","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; Alberta Children's Hospital; Women and Children’s Health Research Institute; University of Calgary; University of Alberta","funders":"Alberta Innovates - Health Solutions","keywords":"Rotavirus; Acute gastroenteritis; Rotavirus vaccine; Virology; Rotavirus gastroenteritis; Odds ratio; Biology; Vaccination; Virus; Medicine; Internal medicine","score_opus":0.03088340628090234,"score_gpt":0.36109821068663045,"score_spread":0.3302148044057281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196178586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99049103,0.0027668024,0.0002758791,0.0007110851,0.000050666673,0.00005975358,0.0015525181,0.000042160947,0.004050119],"genre_scores_gemma":[0.99654984,0.0011826664,0.00049415394,0.0002727692,0.000017258035,0.000013119995,0.00055931904,0.000010159,0.00090071384],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99849,0.000113588496,0.000080110716,0.00021294694,0.00063430535,0.0004690974],"domain_scores_gemma":[0.99810505,0.00013464826,0.00029703966,0.00003528821,0.0009288427,0.00049924664],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00080090435,0.0005882742,0.00046633725,0.0018167937,0.002634732,0.0014110603,0.0013615801,0.0005939705,0.0016728091],"category_scores_gemma":[0.0016850983,0.00041629863,0.00037487174,0.0026317541,0.0013730216,0.00028492376,0.0007735619,0.0008388283,0.00018053218],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014298059,0.000047672074,0.990239,0.0000650199,0.000028580464,0.0006949403,0.0006807523,0.00016795717,0.0009838843,0.000117882555,0.00092612853,0.0059050517],"study_design_scores_gemma":[0.0000127679,0.00005419198,0.9960496,0.00005737663,0.000028396124,0.0005472544,0.0017718938,0.00037235356,0.00022513421,0.000030273992,0.00083444815,0.000016277683],"about_ca_topic_score_codex":0.99350923,"about_ca_topic_score_gemma":0.99510384,"teacher_disagreement_score":0.03589764,"about_ca_system_score_codex":0.03589764,"about_ca_system_score_gemma":0.031466972,"threshold_uncertainty_score":0.26045686},"labels":[],"label_agreement":null},{"id":"W3198858999","doi":"10.1128/jcm.01635-21","title":"Use of Fosfomycin Etest To Determine <i>In Vitro</i> Susceptibility of Clinical Isolates of <i>Enterobacterales</i> Other than Escherichia coli, Nonfermenting Gram-Negative Bacilli, and Gram-Positive Cocci","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Manitoba Health","funders":"","keywords":"Etest; Fosfomycin; Enterococcus faecalis; Staphylococcus aureus; Broth microdilution; Agar; Escherichia coli; Enterobacteriaceae","score_opus":0.04422930541250613,"score_gpt":0.34183438801741445,"score_spread":0.2976050826049083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198858999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9600919,0.0016191662,0.030002054,0.00023191594,0.00012600565,0.0003419012,0.0013993125,0.00035012685,0.0058376463],"genre_scores_gemma":[0.9259264,0.0009850697,0.06645845,0.0001555773,0.000033455093,0.00037123775,0.0024285677,0.00007540409,0.0035659054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9940666,0.0023808694,0.0008392424,0.0009278557,0.0015523589,0.00023304143],"domain_scores_gemma":[0.99435115,0.0024958544,0.00092084287,0.00063150236,0.0013947341,0.00020603785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027116167,0.0006921151,0.00075639284,0.00087282655,0.00019627545,0.00050827616,0.0003896553,0.0005492925,0.00084624876],"category_scores_gemma":[0.0073725404,0.00028399896,0.00037530868,0.0011004034,0.00030606502,0.000488019,0.00041106658,0.00065298635,0.00047261154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0072537228,0.0008993067,0.105634704,0.00032846213,0.00018182128,0.0002997879,0.0007761686,0.0012810428,0.818733,0.00036688562,0.000506641,0.06373851],"study_design_scores_gemma":[0.000092941926,0.0057984297,0.065528944,0.00006341941,0.00014193647,0.0019850286,0.00017450127,0.005712803,0.9160055,0.00015006441,0.0042898827,0.000056568377],"about_ca_topic_score_codex":0.00082559214,"about_ca_topic_score_gemma":0.0011804377,"teacher_disagreement_score":0.0027116167,"about_ca_system_score_codex":0.00021748427,"about_ca_system_score_gemma":0.00032452864,"threshold_uncertainty_score":0.0143405795},"labels":[],"label_agreement":null},{"id":"W3205863181","doi":"10.1128/jcm.01398-21","title":"Multicenter Evaluation of Attenuated Total Reflectance Fourier Transform Infrared (ATR-FTIR) Spectroscopy-Based Method for Rapid Identification of Clinically Relevant Yeasts","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Ste. Anne's Hospital; Centre Intégré Universitaire de Santé et de Services Sociaux du Centre-Sud-de-l'Île-de-Montréal; Centre Hospitalier de l’Université de Montréal; McGill University; Centre Intégré Universitaire de Santé et de Services Sociaux du Saguenay–Lac-Saint-Jean; McGill University Health Centre; Centre Hospitalier Universitaire de Sherbrooke; Centre Hospitalier Universitaire Sainte-Justine; Université de Sherbrooke; Université Sainte-Anne","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Attenuated total reflection; Fourier transform infrared spectroscopy; Infrared; Fourier transform; Multicenter study; Fourier transform spectroscopy; Infrared spectroscopy; Spectroscopy; Medicine; Chemistry; Pathology; Optics; Physics; Organic chemistry","score_opus":0.04515417724509351,"score_gpt":0.3929646534961336,"score_spread":0.34781047625104006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205863181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831528,0.0007431084,0.01284038,0.00009500386,0.00003992801,0.0018379905,0.0005014587,0.00013386337,0.0006553954],"genre_scores_gemma":[0.95350665,0.00049271755,0.042597584,0.00012809875,0.000033696862,0.00094147475,0.0012270448,0.00005199543,0.0010208371],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99049944,0.004511349,0.0010990967,0.0015872794,0.001968995,0.0003337889],"domain_scores_gemma":[0.9935933,0.0008921013,0.0013521599,0.0005527239,0.0032665043,0.00034323204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014183716,0.0015475522,0.0008079123,0.0007005018,0.0008292351,0.0008233744,0.0006961013,0.00093646,0.0009636323],"category_scores_gemma":[0.005913047,0.0003361829,0.00067526987,0.00058776874,0.0004502407,0.00059045426,0.0008089114,0.0004540382,0.0005375041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00992855,0.009594563,0.13423263,0.0006722751,0.0006121187,0.0005627884,0.0010064364,0.0011943161,0.71922016,0.0001729355,0.0008893433,0.12191394],"study_design_scores_gemma":[0.00093985297,0.12412788,0.22666901,0.00011257431,0.00096199417,0.0028716866,0.0011488133,0.0045309747,0.63180286,0.000086115484,0.0066198027,0.00012838196],"about_ca_topic_score_codex":0.00073813973,"about_ca_topic_score_gemma":0.0015049931,"teacher_disagreement_score":0.014183716,"about_ca_system_score_codex":0.00042129026,"about_ca_system_score_gemma":0.0009807177,"threshold_uncertainty_score":0.07501155},"labels":[],"label_agreement":null},{"id":"W3208730021","doi":"10.1128/jcm.01659-21","title":"Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: an Infectious Diseases Society of America/American Society for Microbiology Consensus Review Document","year":2021,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia; Providence Health Care","funders":"Centers for Disease Control and Prevention","keywords":"Genotyping; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Virology; Coronavirus disease 2019 (COVID-19); Medicine; Clinical microbiology; Biology; Immunology; Genotype; Infectious disease (medical specialty); Disease; Genetics; Gene; Microbiology; Internal medicine","score_opus":0.14072014324317678,"score_gpt":0.5192430227912248,"score_spread":0.37852287954804803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3208730021","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00005658854,0.9969207,0.00012207456,0.0010548967,0.00052651536,0.000017369539,0.000050907714,0.000009476676,0.0012415772],"genre_scores_gemma":[0.00028323173,0.9983102,0.00027737446,0.00049932837,0.00015812869,0.000015215537,0.00005850784,0.0000022339968,0.00039570552],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9993574,0.00013539004,0.00013452543,0.000077223376,0.0002528587,0.00004270341],"domain_scores_gemma":[0.99825054,0.00074248534,0.00021515763,0.00003440412,0.0006701805,0.00008720856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020667836,0.0007280809,0.0016214726,0.0032135,0.00029100137,0.0014666994,0.0010832796,0.0015588047,0.0042831493],"category_scores_gemma":[0.0029965846,0.00031880062,0.0012566628,0.0023595372,0.00037785523,0.0013116228,0.0007602579,0.0018354527,0.0025279303],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000059968897,0.000044593802,0.0001527487,0.031235656,0.0001400222,0.000083711595,0.00005442586,0.00015232379,0.00065327814,0.002227653,0.06862775,0.8965679],"study_design_scores_gemma":[0.000019667048,0.000073557385,0.0005737198,0.019547757,0.00026442466,0.0004706095,0.00005313968,0.000050899067,0.0002473836,0.0008121808,0.9778706,0.00001609258],"about_ca_topic_score_codex":0.0019082332,"about_ca_topic_score_gemma":0.002946566,"teacher_disagreement_score":0.0042831493,"about_ca_system_score_codex":0.00087556033,"about_ca_system_score_gemma":0.0040054773,"threshold_uncertainty_score":0.014328599},"labels":[],"label_agreement":null},{"id":"W3210700444","doi":"10.1128/jcm.01363-21","title":"Multicenter Comparison of Nucleic Acid Amplification Tests for the Diagnosis of Rectal and Oropharyngeal Chlamydia trachomatis and Neisseria gonorrhoeae Infections","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Roche Diagnostics; National Institute of Allergy and Infectious Diseases; Abbott Molecular; BD Biosciences; BD; McGill University; Roche","keywords":"Neisseria gonorrhoeae; Chlamydia trachomatis; Nucleic Acid Amplification Tests; Chlamydia; Gonorrhea; Men who have sex with men; Chlamydiaceae; Lymphogranuloma venereum","score_opus":0.09067700175920766,"score_gpt":0.4331342281354208,"score_spread":0.3424572263762131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3210700444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99838233,0.00040976488,0.0002685199,0.00002104583,0.000023068344,0.00011140816,0.00032908536,0.000008116274,0.00044667447],"genre_scores_gemma":[0.9987318,0.00011068148,0.00037691303,0.000043659194,0.000020363506,0.00008626083,0.0005296325,0.0000057218886,0.000094973555],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9891406,0.006450061,0.00081494125,0.0015884477,0.0014496198,0.00055632385],"domain_scores_gemma":[0.98628134,0.004757365,0.0034729731,0.0013709444,0.0032100214,0.00090736605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.013786759,0.0009803477,0.00066985685,0.0013481074,0.0004107111,0.0010571888,0.00088028406,0.0007660829,0.00061534345],"category_scores_gemma":[0.02033908,0.00074293255,0.00077070505,0.0010682147,0.0006113365,0.00063960615,0.0009578838,0.000720483,0.00034032666],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009240939,0.000718816,0.97938293,0.000112967544,0.0008052139,0.000080975464,0.00070233375,0.00022963283,0.00276378,0.000065105705,0.00032003853,0.0055772187],"study_design_scores_gemma":[0.00049866503,0.008361228,0.9864966,0.00004260104,0.00068250386,0.00028028982,0.0005060082,0.0010351648,0.0013779834,0.00004049314,0.0006537712,0.000024624267],"about_ca_topic_score_codex":0.0028936039,"about_ca_topic_score_gemma":0.0026812956,"teacher_disagreement_score":0.013786759,"about_ca_system_score_codex":0.00060690835,"about_ca_system_score_gemma":0.0005346042,"threshold_uncertainty_score":0.072912216},"labels":[],"label_agreement":null},{"id":"W4200127551","doi":"10.1128/jcm.01859-21","title":"Biomarkers That Correlate with Active Pulmonary Tuberculosis Treatment Response: a Systematic Review and Meta-analysis","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"U.S. National Library of Medicine; Fonds de recherche du Québec – Nature et technologies; Fonds de recherche du Québec; National Science Foundation","keywords":"Biomarker; Sputum; Context (archaeology); Tuberculosis; Biomarker discovery; Pulmonary tuberculosis; Clinical trial; Turnaround time","score_opus":0.1257759639332956,"score_gpt":0.42917147579519943,"score_spread":0.30339551186190383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200127551","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0074842833,0.99013454,0.00070892787,0.00027910754,0.00013053766,0.00030363046,0.000682423,0.000027901506,0.00024866042],"genre_scores_gemma":[0.28280827,0.70883554,0.003448612,0.0010717554,0.00032644448,0.0017358488,0.0013661667,0.00004404929,0.00036319398],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.98333526,0.009845597,0.0036030028,0.0015098782,0.0012796841,0.00042654024],"domain_scores_gemma":[0.9579817,0.032856386,0.0055070496,0.0010585887,0.0021747448,0.00042152955],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.018254222,0.0030110404,0.019040458,0.007288001,0.0006505803,0.0031343205,0.0026367854,0.0023674355,0.0032270148],"category_scores_gemma":[0.04293605,0.0016870028,0.0388216,0.009660905,0.0008171884,0.0018920512,0.0016528732,0.001803721,0.0003709456],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020654064,0.000029811537,0.008131719,0.25103596,0.72763014,0.00016719864,0.00006826012,0.00067913736,0.0001824968,0.00010902403,0.0006391016,0.009261803],"study_design_scores_gemma":[0.0005282057,0.00018816697,0.004854557,0.013945908,0.9789227,0.00009384311,0.000032411925,0.00024333068,0.00009740846,0.00015040157,0.0009233184,0.000019674882],"about_ca_topic_score_codex":0.007887322,"about_ca_topic_score_gemma":0.015128988,"teacher_disagreement_score":0.019040458,"about_ca_system_score_codex":0.0028579768,"about_ca_system_score_gemma":0.0037188686,"threshold_uncertainty_score":0.09653872},"labels":[],"label_agreement":null},{"id":"W4205930019","doi":"10.1128/jcm.01597-21","title":"Evaluation of Diagnostic Accuracy of Eight Commercial Assays for the Detection of Rubella Virus-Specific IgM Antibodies","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Hospital Edmonton; University of Alberta; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Rubella; Diagnostic accuracy; Rubella virus; Antibody; Togaviridae; Diagnostic test; Rubella vaccine; Disease","score_opus":0.14582902412231896,"score_gpt":0.44600781956769275,"score_spread":0.3001787954453738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4205930019","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98644245,0.004615111,0.006029811,0.00017063011,0.00022217864,0.00009323607,0.00022748174,0.00018564766,0.0020135439],"genre_scores_gemma":[0.9939657,0.0004119658,0.0049211006,0.000103323044,0.00004708927,0.000030243315,0.00027506574,0.000010934136,0.00023469579],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9891145,0.0039179334,0.00083650596,0.0023301262,0.0031661212,0.000634792],"domain_scores_gemma":[0.9757401,0.015616693,0.0017771418,0.0015477949,0.0046634236,0.0006549493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010450327,0.0013609502,0.0005709039,0.0025701944,0.00044616137,0.0013013652,0.0011481751,0.0019969284,0.0007270233],"category_scores_gemma":[0.02340684,0.00071593584,0.0007496711,0.0008833947,0.001069131,0.0006915181,0.00059117196,0.0012207498,0.0006018543],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008717959,0.0008651114,0.85091174,0.00031643885,0.00079428096,0.00030709655,0.0005503628,0.0014526054,0.05700769,0.00028416625,0.00060878316,0.0781837],"study_design_scores_gemma":[0.0008589464,0.01186405,0.7839155,0.00026874643,0.00185038,0.006137425,0.0007223551,0.06925181,0.11975504,0.0008074512,0.0043772603,0.00019095387],"about_ca_topic_score_codex":0.0015754558,"about_ca_topic_score_gemma":0.0015091577,"teacher_disagreement_score":0.010450327,"about_ca_system_score_codex":0.0007593185,"about_ca_system_score_gemma":0.0004011264,"threshold_uncertainty_score":0.055267334},"labels":[],"label_agreement":null},{"id":"W4212978280","doi":"10.1128/jcm.00914-16","title":"Reply to “May Newly Defined Subgenotypes Va and Vb of Newcastle Disease Virus in Poultry Be Considered Two Different Genotypes?”","year":2016,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Newcastle disease; Genotype; Virology; Biology; Virus; Genetics; Gene","score_opus":0.07506125006856663,"score_gpt":0.38793993068453064,"score_spread":0.312878680615964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4212978280","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005837081,0.0007668298,0.00008358083,0.9717227,0.025819756,0.000011918647,0.000047132195,0.000016035723,0.00094833307],"genre_scores_gemma":[0.004316397,0.0005366052,0.0001607381,0.95724076,0.03439174,0.000026300779,0.000036070505,0.000014178995,0.00327728],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99660826,0.00096415327,0.0005032299,0.0005088766,0.0006603742,0.0007551685],"domain_scores_gemma":[0.99235547,0.0033499962,0.0011563844,0.00026666312,0.0015841611,0.0012873717],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036956118,0.0010381636,0.001474869,0.0007526191,0.00392339,0.0035284916,0.0018704107,0.06649832,0.0054589775],"category_scores_gemma":[0.033886105,0.0012745393,0.0011929554,0.0005505573,0.0030943647,0.003112319,0.0024456484,0.04061725,0.007216576],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089730136,0.000033678723,0.0014862457,0.00006677965,0.000025188334,0.0037333563,0.00038751555,0.00007764948,0.00032219087,0.0012690487,0.9876061,0.0049024317],"study_design_scores_gemma":[0.00025640795,0.00021297082,0.0042779595,0.0006696665,0.00009597287,0.007451845,0.0020660185,0.0008297641,0.00060851744,0.009696403,0.97366804,0.00016623239],"about_ca_topic_score_codex":0.0035697543,"about_ca_topic_score_gemma":0.004291709,"teacher_disagreement_score":0.06649832,"about_ca_system_score_codex":0.003541046,"about_ca_system_score_gemma":0.002935182,"threshold_uncertainty_score":0.025692225},"labels":[],"label_agreement":null},{"id":"W4214696784","doi":"10.1128/jcm.02229-21","title":"Characterization of Atypical Shiga Toxin Gene Sequences and Description of Stx2j, a New Subtype","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Canadian Food Inspection Agency; Health Canada","funders":"European Commission","keywords":"STX2; Shiga toxin; Biology; Virulence; Escherichia coli; Microbiology; Multilocus sequence typing; Serotype; Sanger sequencing; Genotype; Virology; Gene; Genetics; DNA sequencing","score_opus":0.05764581161018131,"score_gpt":0.3506909434796113,"score_spread":0.29304513186942993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214696784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987822,0.00014148708,0.00031562438,0.0000357746,0.000009792802,0.00001498538,0.00029671128,0.0000029359053,0.00040051478],"genre_scores_gemma":[0.9950597,0.00021609718,0.0015217661,0.0001007863,0.000029469273,0.000018512836,0.0021494033,0.0000078313415,0.0008965192],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99987566,0.0000099349045,0.00001932931,0.000028521978,0.00003853801,0.00002805615],"domain_scores_gemma":[0.99963236,0.000057167817,0.00008208145,0.000045760822,0.00010461419,0.00007800303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015591232,0.00026340704,0.00021698099,0.00045945414,0.00022158536,0.0005073758,0.00016848126,0.0002988267,0.00061129715],"category_scores_gemma":[0.0005025757,0.00014097177,0.0002396576,0.00057177246,0.00019262913,0.00018070234,0.00018226751,0.00033947278,0.00020409063],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054362905,0.0001715128,0.22944053,0.00011416514,0.00003573412,0.0039666956,0.0009138774,0.0001974168,0.75516516,0.00020833284,0.00026141808,0.008981475],"study_design_scores_gemma":[0.00006846656,0.000715394,0.9355621,0.00004467108,0.000057234378,0.013206491,0.0013060756,0.0014109093,0.041681334,0.00016130395,0.0057648635,0.00002111443],"about_ca_topic_score_codex":0.004292082,"about_ca_topic_score_gemma":0.0052536605,"teacher_disagreement_score":0.004292082,"about_ca_system_score_codex":0.00021731306,"about_ca_system_score_gemma":0.00028876276,"threshold_uncertainty_score":0.008534193},"labels":[],"label_agreement":null},{"id":"W4220907081","doi":"10.1128/jcm.02530-21","title":"Evaluation of the Hologic Aptima Combo 2 Assay for Detection of Neisseria gonorrhoeae from Joint Fluid Specimens","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; Public Health Agency of Canada; University of Manitoba","funders":"","keywords":"Neisseria gonorrhoeae; Neisseriaceae; Joint (building); Medicine; Microbiology; Biology; Antibiotics","score_opus":0.15364674597665695,"score_gpt":0.4115203046539895,"score_spread":0.2578735586773325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220907081","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97075874,0.0029889764,0.010039089,0.0003520656,0.00032435177,0.0005464484,0.00083647954,0.00032393387,0.013829899],"genre_scores_gemma":[0.98671526,0.0003337091,0.0106912805,0.00034680686,0.000055773013,0.000075884214,0.0003437513,0.000024622068,0.0014129411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960452,0.0010739184,0.00049774616,0.00046926737,0.0016769097,0.00023688271],"domain_scores_gemma":[0.99578804,0.0021408056,0.0005013665,0.0003503721,0.0009820887,0.0002373511],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002696025,0.00077711977,0.0005705242,0.0015813615,0.00044503764,0.0008642898,0.00038818264,0.0008813055,0.002045535],"category_scores_gemma":[0.00751849,0.0004735597,0.00050330657,0.000538081,0.0007830977,0.00032453422,0.00035154397,0.00043283447,0.0007896086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020247777,0.00046943218,0.2763639,0.0006185706,0.00023174266,0.0071801473,0.0013681112,0.00027852965,0.664822,0.00027883315,0.0012913228,0.045072667],"study_design_scores_gemma":[0.00017024875,0.0040490646,0.34152415,0.0001403285,0.000519904,0.033854835,0.00084459194,0.0056685084,0.60330033,0.00028478637,0.009555415,0.00008788923],"about_ca_topic_score_codex":0.0019011027,"about_ca_topic_score_gemma":0.0027169536,"teacher_disagreement_score":0.002696025,"about_ca_system_score_codex":0.00023093172,"about_ca_system_score_gemma":0.0004809457,"threshold_uncertainty_score":0.014258087},"labels":[],"label_agreement":null},{"id":"W4220922945","doi":"10.1128/jcm.02283-21","title":"Highly Sensitive Lineage Discrimination of SARS-CoV-2 Variants through Allele-Specific Probe PCR","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"FP7 Health; NIHR Imperial Biomedical Research Centre; Medical Research Council; National Health and Medical Research Council; Fundação Lemann; European Commission; Minderoo Foundation; University of Oxford; Canadian Institutes of Health Research; National Institute for Health and Care Research; Health Research Board; AstraZeneca; Translational Breast Cancer Research Consortium; Wellcome Trust; Pittsburgh Foundation","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Biology; Lineage (genetic); Virology; Coronavirus disease 2019 (COVID-19); DNA sequencing; 2019-20 coronavirus outbreak; Allele; Genetics; Polymerase chain reaction; Gold standard (test); Computational biology; Gene; Medicine; Infectious disease (medical specialty)","score_opus":0.14923863145981706,"score_gpt":0.43109507992173934,"score_spread":0.28185644846192226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220922945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8504977,0.0016891765,0.13411966,0.00034305023,0.000151569,0.00045669614,0.0030272172,0.0010769845,0.008638036],"genre_scores_gemma":[0.77615803,0.0008136536,0.20691209,0.0004146164,0.00004028267,0.0005106946,0.0040513254,0.0001792703,0.0109201195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99843055,0.00040945518,0.0001296778,0.0005415576,0.00031809008,0.00017049076],"domain_scores_gemma":[0.9993179,0.00028096512,0.00012693496,0.000052282932,0.00014770508,0.000074132215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093594746,0.0007688543,0.00033241662,0.00081352855,0.00023014218,0.00055778195,0.00032751594,0.00092805235,0.005611651],"category_scores_gemma":[0.0016561332,0.0004634,0.00024175338,0.00045294213,0.0003825956,0.00042893997,0.00035498381,0.00091914675,0.002306052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010576334,0.000036790352,0.0024028574,0.00004945615,0.0000068455506,0.000043886314,0.00007130527,0.00007232615,0.9909601,0.00012715274,0.00013175019,0.005991859],"study_design_scores_gemma":[0.000028622308,0.00052317383,0.023232171,0.0000399146,0.00003964045,0.0009730851,0.00013287255,0.0033202823,0.96384156,0.00037384912,0.0074664936,0.000028346156],"about_ca_topic_score_codex":0.0002481338,"about_ca_topic_score_gemma":0.0010200498,"teacher_disagreement_score":0.005611651,"about_ca_system_score_codex":0.00022665145,"about_ca_system_score_gemma":0.00026143546,"threshold_uncertainty_score":0.01877284},"labels":[],"label_agreement":null},{"id":"W4221014762","doi":"10.1128/jcm.02429-21","title":"Prevalence and Mortality Associated with Bloodstream Organisms: a Population-Wide Retrospective Cohort Study","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto; University Health Network; Ottawa Hospital; Institute for Clinical Evaluative Sciences; Public Health Ontario","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Odds ratio; Medicine; Population; Blood culture; Retrospective cohort study; Incidence (geometry); Internal medicine; Bacteremia; Confidence interval; Mortality rate; Cohort study; Biology; Microbiology; Antibiotics; Environmental health","score_opus":0.023788401465052067,"score_gpt":0.3290643978215874,"score_spread":0.30527599635653535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221014762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855775,0.00028014934,0.00013198984,0.000033508277,0.000009604751,0.0000147491755,0.00075188844,0.000005153064,0.00021525114],"genre_scores_gemma":[0.998955,0.00020570793,0.00010350464,0.00003448577,0.000012566576,0.000015808837,0.0005292883,0.0000036181798,0.00013986744],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9991308,0.00018460857,0.000089737696,0.00031730902,0.00014136678,0.00013624702],"domain_scores_gemma":[0.9987398,0.0001349543,0.00039426924,0.00024558534,0.00018629077,0.00029901255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009543124,0.0005639069,0.00061739597,0.00078125513,0.00080817175,0.0010546095,0.0005685239,0.0010360719,0.0016709022],"category_scores_gemma":[0.0016663919,0.0011958178,0.0011357204,0.0014793974,0.00047128645,0.0007572128,0.00073229364,0.0013872813,0.00039438423],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019858821,0.000050734856,0.99860543,0.000008985201,0.00023821314,0.00010293978,0.00005237162,0.000029290284,0.00027135274,0.000010319854,0.00012362083,0.0003081946],"study_design_scores_gemma":[0.000022783066,0.00012702055,0.9989851,0.0000065940235,0.00010906771,0.00033840214,0.00012583846,0.000119299504,0.000037852158,0.000012268163,0.00010793467,0.000007783066],"about_ca_topic_score_codex":0.011414157,"about_ca_topic_score_gemma":0.011699111,"teacher_disagreement_score":0.011414157,"about_ca_system_score_codex":0.00043565713,"about_ca_system_score_gemma":0.00049875217,"threshold_uncertainty_score":0.022695482},"labels":[],"label_agreement":null},{"id":"W4225433995","doi":"10.1128/jcm.00807-21","title":"The Ins and Outs of Susceptibility Testing for New β-Lactam/β-Lactamase Inhibitor Combinations for Gram-Negative Organisms","year":2022,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Avibactam; Microbiology; Ceftazidime/avibactam; Meropenem; Lactam; Ceftazidime; Imipenem; Antibiotics; Biology; Antimicrobial; Beta-Lactamase Inhibitors; Medicine; Antibiotic resistance; Bacteria; Pseudomonas aeruginosa; Chemistry; Genetics","score_opus":0.11056014017215197,"score_gpt":0.4173562239196431,"score_spread":0.3067960837474911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4225433995","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000068977795,0.9975351,0.00018830944,0.00062600663,0.0005400631,0.0000055727983,0.000019048166,0.00001242309,0.0010044607],"genre_scores_gemma":[0.00045859755,0.9976172,0.00034282834,0.00051992777,0.00035921612,0.0000075222506,0.00003608532,0.0000048659836,0.0006537231],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992843,0.00015436545,0.00011426035,0.00011480736,0.0002788791,0.000053453557],"domain_scores_gemma":[0.9978788,0.0010553378,0.00020271055,0.00007415455,0.0006333712,0.00015570041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001924952,0.0010427133,0.0016774031,0.003687641,0.00035687504,0.0015516629,0.0013740525,0.0020454563,0.004183058],"category_scores_gemma":[0.0028695017,0.0004179446,0.00075368746,0.0026724734,0.001037211,0.0028378994,0.0009331955,0.0029349797,0.0034966979],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004716774,0.000042025214,0.00016410441,0.012468112,0.00004995103,0.00018683333,0.000055614928,0.00014223944,0.0010009203,0.0037379854,0.044926137,0.9371789],"study_design_scores_gemma":[0.000008474608,0.00006001508,0.0005411027,0.0036706505,0.00005923143,0.0012219608,0.0000517732,0.000052121522,0.00034629827,0.0012495413,0.99272174,0.000017267637],"about_ca_topic_score_codex":0.0011004395,"about_ca_topic_score_gemma":0.0018185205,"teacher_disagreement_score":0.004183058,"about_ca_system_score_codex":0.0008907096,"about_ca_system_score_gemma":0.0017613366,"threshold_uncertainty_score":0.0139936805},"labels":[],"label_agreement":null},{"id":"W4230469386","doi":"10.1128/jcm.42.4.1716-1718.2004","title":"Quality Control Limits for Voriconazole Disk Susceptibility Tests on Mueller-Hinton Agar with Glucose and Methylene Blue","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Agar; Methylene blue; Candida krusei; Microbiology; Candida albicans; Candida parapsilosis; Voriconazole; Candida tropicalis; Agar plate; Agar dilution; Biology; Agar diffusion test; Chemistry; Chromatography; Minimum inhibitory concentration; Antifungal; Bacteria; Biochemistry; Antimicrobial; Escherichia coli","score_opus":0.06028625515444849,"score_gpt":0.40866777458339554,"score_spread":0.348381519428947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4230469386","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.43277657,0.012089794,0.5117792,0.0033585962,0.0018073373,0.009999669,0.003704324,0.0021069837,0.022377461],"genre_scores_gemma":[0.49336377,0.002588229,0.48026937,0.0010218399,0.00033300574,0.0064145545,0.009614973,0.0004424751,0.005951894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9373204,0.02385177,0.012696755,0.0030561762,0.021343378,0.0017315894],"domain_scores_gemma":[0.8593596,0.04620422,0.011700331,0.016648838,0.06468889,0.0013981271],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0727351,0.001212496,0.0012323463,0.00476646,0.0021239219,0.0033243438,0.003633391,0.0035424547,0.002014112],"category_scores_gemma":[0.09137394,0.00067121064,0.0019099496,0.0031397094,0.0022599183,0.0016285698,0.0014573948,0.0015433083,0.0011296334],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027149986,0.0027009535,0.08055149,0.0025787873,0.0002219376,0.00096247933,0.005286718,0.006612542,0.64387786,0.011012536,0.008378374,0.23510139],"study_design_scores_gemma":[0.00033248772,0.010673052,0.0831925,0.0015721382,0.0007501732,0.0021487144,0.0022494488,0.013530813,0.8049989,0.0032307394,0.07698939,0.00033172758],"about_ca_topic_score_codex":0.004554453,"about_ca_topic_score_gemma":0.003592836,"teacher_disagreement_score":0.0727351,"about_ca_system_score_codex":0.0020091075,"about_ca_system_score_gemma":0.0030290962,"threshold_uncertainty_score":0.3846646},"labels":[],"label_agreement":null},{"id":"W4234427079","doi":"10.1128/jcm.01795-13","title":"Development of a Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Capripoxviruses","year":2013,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Loop-mediated isothermal amplification; Biology; Virology; Molecular biology; Computational biology; Genetics; DNA","score_opus":0.057200629982615624,"score_gpt":0.3702260407628159,"score_spread":0.3130254107802003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234427079","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3867379,0.0030403377,0.59689283,0.00047503557,0.00037360485,0.0016364589,0.0012686407,0.003773457,0.0058016814],"genre_scores_gemma":[0.58187264,0.0012463428,0.4042991,0.00056087243,0.0001209534,0.0015822932,0.0029628035,0.00020015772,0.007154739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99769515,0.00052705227,0.000088785324,0.00048546318,0.000958143,0.0002453399],"domain_scores_gemma":[0.99816304,0.0009403626,0.00017261878,0.00017298809,0.00036716455,0.00018380747],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001758458,0.0014419326,0.0010453839,0.001631886,0.0005027896,0.00107302,0.0020874736,0.001919357,0.0016263198],"category_scores_gemma":[0.0027202596,0.001162044,0.0007989499,0.0005006686,0.00069782697,0.0010017797,0.0008961287,0.0026213962,0.0014566496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010312305,0.00011703618,0.00035394906,0.00007674513,0.000015195267,0.00003079324,0.000043239677,0.00020933872,0.98985773,0.00020919742,0.00014326177,0.008840385],"study_design_scores_gemma":[0.000023651868,0.0005833691,0.0013652057,0.000024141971,0.000031166117,0.00025354227,0.000019975154,0.009580113,0.986072,0.00012260782,0.0018941428,0.000030032505],"about_ca_topic_score_codex":0.00087763637,"about_ca_topic_score_gemma":0.0014309455,"teacher_disagreement_score":0.0020874736,"about_ca_system_score_codex":0.0007915179,"about_ca_system_score_gemma":0.0008792069,"threshold_uncertainty_score":0.0092996955},"labels":[],"label_agreement":null},{"id":"W4236839655","doi":"10.1128/jcm.40.4.1231-1236.2002","title":"Phenotypic and Molecular Characterization of Clinical Isolates of Mycobacterium elephantis from Human Specimens","year":2002,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Phenotype; Biology; Microbiology; Mycobacterium; Virology; Bacteria; Genetics; Gene","score_opus":0.06263378275542983,"score_gpt":0.3809090713204934,"score_spread":0.3182752885650636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236839655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99811065,0.0005475002,0.00033948588,0.000075482785,0.000010804933,0.000075847194,0.00036860965,0.0000063521466,0.00046520922],"genre_scores_gemma":[0.9958448,0.00082602166,0.0012549058,0.00010525179,0.00003333823,0.00004258555,0.0012436856,0.0000063265543,0.00064303854],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9995396,0.000050129027,0.00005844346,0.00010627831,0.00015746841,0.000088070185],"domain_scores_gemma":[0.99954164,0.00007722223,0.00008086416,0.00005082113,0.00016457775,0.0000849404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002331901,0.00039184542,0.00039735567,0.00067056424,0.00061561447,0.00047590604,0.00031549647,0.0004647871,0.0004513988],"category_scores_gemma":[0.0018566436,0.00022606399,0.00017155289,0.00059735414,0.0004693866,0.00019583652,0.00028591184,0.00032240516,0.00026673384],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014758612,0.0004834112,0.543579,0.00054467877,0.00006008664,0.015454638,0.0029458704,0.00044108083,0.4037321,0.00011797311,0.00079921534,0.030366056],"study_design_scores_gemma":[0.00007438715,0.0010851392,0.93318063,0.00007626616,0.00007668962,0.023795195,0.0022404043,0.0003973617,0.034653496,0.000081286395,0.00431418,0.00002485444],"about_ca_topic_score_codex":0.022833273,"about_ca_topic_score_gemma":0.022041004,"teacher_disagreement_score":0.022833273,"about_ca_system_score_codex":0.00055592274,"about_ca_system_score_gemma":0.0006588588,"threshold_uncertainty_score":0.04540074},"labels":[],"label_agreement":null},{"id":"W4239353589","doi":"10.1128/jcm.00255-10","title":"Comparison of Automated Microarray Detection with Real-Time PCR Assays for Detection of Respiratory Viruses in Specimens Obtained from Children","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Respiratory viral infections research","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut National de Santé Publique du Québec","funders":"","keywords":"Microarray; Virology; Biology; Respiratory system; Real-time polymerase chain reaction; Computational biology; Gene; Gene expression; Genetics","score_opus":0.07972415067106399,"score_gpt":0.44483174098857464,"score_spread":0.36510759031751067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239353589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9562347,0.0027022194,0.036140256,0.00035612515,0.00037847843,0.00014927278,0.0010671194,0.0004178507,0.0025540146],"genre_scores_gemma":[0.9009343,0.0013540257,0.091240734,0.0003965084,0.00015412923,0.0005420498,0.0022806919,0.00006699172,0.0030305798],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9947084,0.001845834,0.00032037753,0.00086525903,0.0019004882,0.00035967343],"domain_scores_gemma":[0.99418056,0.0036902966,0.0005616669,0.00033271525,0.0011002049,0.00013466136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025928642,0.0008987663,0.0010101474,0.001446562,0.000590541,0.0012485773,0.0011143899,0.0013364804,0.0016514914],"category_scores_gemma":[0.0048147147,0.0008333863,0.0006505905,0.0010031321,0.0004997775,0.0009450084,0.0005136842,0.0008181655,0.00074554246],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041773836,0.00045453003,0.034977213,0.00051557604,0.00026049578,0.00013854777,0.0004671472,0.001690933,0.91817784,0.00032488274,0.0006932871,0.038122177],"study_design_scores_gemma":[0.00014128316,0.0037631018,0.1536202,0.00007648041,0.0003907974,0.0014397983,0.000619246,0.03320613,0.80151874,0.00039776953,0.0047136354,0.000112752095],"about_ca_topic_score_codex":0.0014218369,"about_ca_topic_score_gemma":0.003230061,"teacher_disagreement_score":0.0025928642,"about_ca_system_score_codex":0.0009538234,"about_ca_system_score_gemma":0.00055034587,"threshold_uncertainty_score":0.013712525},"labels":[],"label_agreement":null},{"id":"W4245713929","doi":"10.1128/jcm.41.7.3410-3412.2003","title":"Quality Control Limits for Fluconazole Disk Susceptibility Tests on Mueller-Hinton Agar with Glucose and Methylene Blue","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Methylene blue; Agar; Microbiology; Fluconazole; Agar dilution; Agar plate; Biology; Chemistry; Chromatography; Antifungal; Bacteria; Biochemistry","score_opus":0.06309728202043399,"score_gpt":0.40752187177718663,"score_spread":0.3444245897567526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245713929","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.41290423,0.011694801,0.5280608,0.0035743772,0.001899124,0.0100687295,0.004247994,0.002305212,0.025244756],"genre_scores_gemma":[0.4685986,0.0025669797,0.5013624,0.0011554528,0.00034534727,0.0072331624,0.0111871455,0.00053060823,0.0070204167],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9325671,0.023785345,0.013871038,0.0033558004,0.024463315,0.0019574622],"domain_scores_gemma":[0.84875107,0.045142256,0.012044728,0.018307555,0.074131444,0.0016229938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.079541564,0.0012357509,0.0012344515,0.005430545,0.0023979899,0.003276178,0.004033501,0.003786427,0.002334253],"category_scores_gemma":[0.093291156,0.0007004307,0.0021282881,0.0033373178,0.0022427943,0.0017938457,0.0016955459,0.0016062388,0.0013060861],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026962392,0.003104288,0.08294574,0.0026687386,0.00024328973,0.0010356042,0.005607871,0.007500819,0.5999483,0.013455604,0.011091535,0.269702],"study_design_scores_gemma":[0.00035001378,0.01112611,0.09103019,0.0017302493,0.0008484442,0.0023445794,0.0023473965,0.015314003,0.77592117,0.003846438,0.09475881,0.00038252867],"about_ca_topic_score_codex":0.0051944912,"about_ca_topic_score_gemma":0.0039012511,"teacher_disagreement_score":0.079541564,"about_ca_system_score_codex":0.0021403274,"about_ca_system_score_gemma":0.0034240298,"threshold_uncertainty_score":0.42066103},"labels":[],"label_agreement":null},{"id":"W4249578946","doi":"10.1128/jcm.06656-11","title":"Human Papillomavirus (HPV) DNA Triage of Women with Atypical Squamous Cells of Undetermined Significance with cobas 4800 HPV and Hybrid Capture 2 Tests for Detection of High-Grade Lesions of the Uterine Cervix","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital; Université de Montréal; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Colposcopy; Cervical intraepithelial neoplasia; Medicine; Hybrid capture; Human papillomavirus; Triage; Confidence interval; Gynecology; Papillomaviridae; Internal medicine; Obstetrics; Oncology; Cervical cancer; Cancer","score_opus":0.05760684525168603,"score_gpt":0.38127260202765495,"score_spread":0.3236657567759689,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249578946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985238,0.0004445221,0.0005226175,0.00003005245,0.0000129938435,0.000048712347,0.000092039016,0.000017140164,0.00030816294],"genre_scores_gemma":[0.9982584,0.00012446506,0.0011398226,0.000040179784,0.000009013348,0.00004145428,0.00016930768,0.000003397758,0.00021400413],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987852,0.00057844643,0.00008642634,0.0002417174,0.0002242937,0.000083932566],"domain_scores_gemma":[0.9983065,0.000750166,0.00037171182,0.00012488055,0.0002780833,0.00016868162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019369519,0.0003313996,0.0004552274,0.0008288393,0.00023363472,0.00044214344,0.0003689964,0.00053805095,0.0014848341],"category_scores_gemma":[0.0039877854,0.0003663431,0.00031935913,0.00051974977,0.0003126793,0.0003906893,0.0004145895,0.00040035567,0.00048368998],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019769808,0.000075470125,0.9836932,0.00004275203,0.00005632139,0.00016185705,0.00017591969,0.00007727046,0.005047577,0.000013284656,0.00020780739,0.008471687],"study_design_scores_gemma":[0.000102974926,0.001993298,0.98769814,0.000017288354,0.000069653135,0.0011029827,0.0003499014,0.0022891623,0.0058810706,0.00005358214,0.00042717427,0.000014707529],"about_ca_topic_score_codex":0.0030612536,"about_ca_topic_score_gemma":0.0034256396,"teacher_disagreement_score":0.0030612536,"about_ca_system_score_codex":0.00038088046,"about_ca_system_score_gemma":0.00032578816,"threshold_uncertainty_score":0.010243714},"labels":[],"label_agreement":null},{"id":"W4249737533","doi":"10.1128/jcm.38.2.945-945.2000","title":"Evaluation of a <i>vanA</i> -specific PCR Assay for Detection of Vancomycin-Resistant <i>Enterococcus faecium</i> during a Hospital Outbreak","year":2000,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Hôpital Notre-Dame","funders":"","keywords":"Enterococcus faecium; Outbreak; Enterococcus; Microbiology; Vancomycin-resistant Enterococcus; Vancomycin; Biology; Gram-positive bacterial infections; Virology; Medicine; Antibiotics; Bacteria; Staphylococcus aureus; Genetics","score_opus":0.043242084289567405,"score_gpt":0.3529741167515631,"score_spread":0.3097320324619957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249737533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920725,0.00047509154,0.0041963262,0.0002795432,0.00015560405,0.00022302073,0.00036085316,0.000108986096,0.0021280493],"genre_scores_gemma":[0.99355114,0.0001949429,0.0049963547,0.00024368375,0.00003823363,0.00006390081,0.000405921,0.000021424596,0.00048426585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972,0.0005595601,0.00040621698,0.0006389713,0.0007897164,0.00040562995],"domain_scores_gemma":[0.99636275,0.0015000384,0.0004988478,0.0001331767,0.001168998,0.0003362127],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016010458,0.0010493791,0.0007131318,0.001107176,0.00058486,0.0011791959,0.0010186401,0.001333497,0.0008073255],"category_scores_gemma":[0.0059260726,0.0006680233,0.0006933751,0.00052817597,0.00067185966,0.0007095429,0.00045104872,0.0009888611,0.0004010396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025873221,0.0011026576,0.08481102,0.00049867894,0.00010900404,0.0045965724,0.0013339919,0.00070061645,0.88947356,0.0001699275,0.00045825198,0.014158358],"study_design_scores_gemma":[0.00018149984,0.011481525,0.15905076,0.00018536524,0.00055960804,0.017350707,0.0036206944,0.007762171,0.79627806,0.00015373107,0.0032605932,0.00011528176],"about_ca_topic_score_codex":0.00353982,"about_ca_topic_score_gemma":0.0032390547,"teacher_disagreement_score":0.00353982,"about_ca_system_score_codex":0.00057214696,"about_ca_system_score_gemma":0.0006294954,"threshold_uncertainty_score":0.008467197},"labels":[],"label_agreement":null},{"id":"W4280531240","doi":"10.1128/jcm.01716-21","title":"Utility of Cytomegalovirus Cell-Mediated Immunity Assays in Solid Organ Transplantation","year":2022,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Cytomegalovirus and herpesvirus research","field":"Medicine","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Cytomegalovirus; Transplantation; Serology; Immunology; Organ transplantation; Immunity; Cytomegalovirus infections; Cytomegalovirus infection; Viral load; Virology; Solid organ; Medicine; Human cytomegalovirus; Viral disease; Herpesviridae; Biology; Virus; Immune system; Antibody; Internal medicine","score_opus":0.15061184611342662,"score_gpt":0.4587160006749444,"score_spread":0.30810415456151774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280531240","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000067797795,0.999288,0.00006223416,0.00014937075,0.0001046406,0.0000036594035,0.000010874049,0.0000028580712,0.00031048516],"genre_scores_gemma":[0.00077649154,0.9986009,0.00018965533,0.00015341133,0.00011196465,0.000005867199,0.000020975069,0.000001343058,0.0001394389],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990095,0.00023691005,0.00020753976,0.0001240369,0.00037273564,0.00004919568],"domain_scores_gemma":[0.997056,0.0018864679,0.0003060199,0.00005452734,0.0006208879,0.000076077165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026158926,0.00080460595,0.0020894948,0.0040734424,0.00022364035,0.0015367944,0.0011354829,0.0014722056,0.0026046988],"category_scores_gemma":[0.0041222065,0.00037082558,0.0012449299,0.0024837293,0.0006214272,0.0013877195,0.0006780515,0.002004014,0.001150837],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010136417,0.000048461527,0.00040146432,0.024897521,0.000179116,0.00009877481,0.00004863367,0.00020810163,0.00067994616,0.0015684557,0.01093201,0.96083605],"study_design_scores_gemma":[0.000054596592,0.0003009398,0.003150625,0.02778222,0.0008510818,0.002327365,0.00013424506,0.0002485939,0.0012696661,0.0025463214,0.9612756,0.000058889378],"about_ca_topic_score_codex":0.0011083352,"about_ca_topic_score_gemma":0.0017303283,"teacher_disagreement_score":0.0040734424,"about_ca_system_score_codex":0.0007809607,"about_ca_system_score_gemma":0.001474751,"threshold_uncertainty_score":0.013834357},"labels":[],"label_agreement":null},{"id":"W4280620107","doi":"10.1128/jcm.02495-21","title":"Prevalence and Characterization of the Cefazolin Inoculum Effect in North American Methicillin-Susceptible Staphylococcus aureus Isolates","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Cefazolin; Broth microdilution; Microbiology; Staphylococcus aureus; Biology; Meticillin; Veterinary medicine; Micrococcaceae; Bacteria; Antibacterial agent; Antibiotics; Medicine; Minimum inhibitory concentration","score_opus":0.018778575734792007,"score_gpt":0.3248893671314109,"score_spread":0.3061107913966189,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280620107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859875,0.00038343566,0.000090911984,0.000029625684,0.0000024786693,0.0000074289237,0.00010286736,0.000005403611,0.0007790396],"genre_scores_gemma":[0.99943596,0.00015255803,0.00013580054,0.000013761816,0.000003829158,0.0000045550973,0.000080774764,0.0000010102991,0.00017167337],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99942786,0.0001568316,0.000047178655,0.000111500165,0.00019609221,0.000060498685],"domain_scores_gemma":[0.9987729,0.00047427768,0.00028753586,0.0000833386,0.00024987911,0.00013196605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005058248,0.00014464968,0.00015397146,0.00096131733,0.0002236939,0.0004545546,0.00020085607,0.00029033463,0.0016357937],"category_scores_gemma":[0.002539997,0.0001404568,0.00010649943,0.000517726,0.00027698747,0.00033749244,0.00020681966,0.00019689175,0.00016765961],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003165978,0.00016300261,0.966907,0.00004719798,0.000032767406,0.0003696863,0.0003818449,0.0000642168,0.02019583,0.000053173055,0.00026419185,0.011204438],"study_design_scores_gemma":[0.0000018278495,0.00012422318,0.997407,0.0000067225287,0.000007016224,0.0007296217,0.0002020954,0.00009662598,0.001138565,0.000009706751,0.00027358532,0.0000029579426],"about_ca_topic_score_codex":0.0070770285,"about_ca_topic_score_gemma":0.0086842375,"teacher_disagreement_score":0.0070770285,"about_ca_system_score_codex":0.0002628774,"about_ca_system_score_gemma":0.0002459358,"threshold_uncertainty_score":0.014071703},"labels":[],"label_agreement":null},{"id":"W4282573351","doi":"10.1128/jcm.00250-22","title":"Real-Time PCR Differential Detection of <i>Neorickettsia findlayensis</i> and <i>N. risticii</i> in Cases of Potomac Horse Fever","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph; Université de Montréal","funders":"College of Veterinary Medicine, Ohio State University","keywords":"Virology; Horse; Biology; Microbiology","score_opus":0.018676215760693737,"score_gpt":0.29446642940443146,"score_spread":0.27579021364373774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282573351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9409095,0.0019709812,0.024783662,0.0005903035,0.00039723565,0.0009231747,0.00964627,0.0007405799,0.020038277],"genre_scores_gemma":[0.9530969,0.000987128,0.030310405,0.0007488883,0.000071147944,0.00049816404,0.0068573807,0.00004428551,0.0073857494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986934,0.00011630031,0.00011147945,0.0003817463,0.00046876405,0.00022845822],"domain_scores_gemma":[0.9992969,0.00016458907,0.00018370908,0.000033758264,0.00026999955,0.00005100424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00065848086,0.00055038783,0.0003764695,0.0009818105,0.00031446616,0.0008328021,0.0004710367,0.00049684796,0.0031333878],"category_scores_gemma":[0.00093119184,0.00023815174,0.00025246074,0.0007042989,0.0007934614,0.00019702132,0.00016018799,0.00047532862,0.0005138274],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006355513,0.00021680855,0.09095245,0.00039939518,0.000052003736,0.0009444469,0.0007519457,0.00040154802,0.8819828,0.0003493346,0.0018361746,0.021477506],"study_design_scores_gemma":[0.00013997835,0.0015538997,0.47465456,0.00041073706,0.00034605118,0.004448687,0.003075453,0.010169996,0.46449783,0.0005590349,0.040044602,0.00009911082],"about_ca_topic_score_codex":0.025747092,"about_ca_topic_score_gemma":0.08790639,"teacher_disagreement_score":0.025747092,"about_ca_system_score_codex":0.001507478,"about_ca_system_score_gemma":0.0011137961,"threshold_uncertainty_score":0.05119443},"labels":[],"label_agreement":null},{"id":"W4286111042","doi":"10.1128/jcm.00155-22","title":"Diagnostic Accuracy of the Truenat MTB Plus Assay and Comparison with the Xpert MTB/RIF Assay to Detect Tuberculosis among Hospital Outpatients in Cameroon","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Global Affairs Canada","keywords":"Tuberculosis; Mycobacterium tuberculosis; Medicine; GeneXpert MTB/RIF; Virology; Tuberculosis diagnosis; Medical screening; Case finding; Internal medicine; Pathology","score_opus":0.03312930518549204,"score_gpt":0.37008684098173766,"score_spread":0.3369575357962456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286111042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981773,0.001060174,0.0002780176,0.00007778675,0.000022086586,0.000015385254,0.00011569697,0.0000058617075,0.0002475663],"genre_scores_gemma":[0.99938357,0.00016990003,0.00030554834,0.000023708295,0.0000084631,0.0000061483815,0.00005713081,0.000001110274,0.000044482997],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99786526,0.0012722815,0.00017426061,0.0002822447,0.00017427474,0.00023170101],"domain_scores_gemma":[0.99685377,0.0014907504,0.0007170361,0.00016220268,0.0005054068,0.00027090337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037244202,0.0008795777,0.00033748132,0.0011557654,0.00029755195,0.001085858,0.0004959253,0.00045282775,0.00059499376],"category_scores_gemma":[0.008840563,0.00044686237,0.0004134968,0.0006012695,0.000629099,0.00081452145,0.0005386981,0.00049309403,0.00013938293],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00094433705,0.00006984529,0.98572856,0.0000468545,0.000043645174,0.0004186432,0.0005230526,0.00044135883,0.002255277,0.000047238875,0.00015097378,0.009330282],"study_design_scores_gemma":[0.00005362462,0.0010124334,0.9889631,0.00009698494,0.00010769607,0.0015345064,0.00087522727,0.004639904,0.002053424,0.0000692682,0.0005563063,0.00003740137],"about_ca_topic_score_codex":0.011110681,"about_ca_topic_score_gemma":0.010075956,"teacher_disagreement_score":0.011110681,"about_ca_system_score_codex":0.0009890547,"about_ca_system_score_gemma":0.00045462415,"threshold_uncertainty_score":0.022092044},"labels":[],"label_agreement":null},{"id":"W4288058984","doi":"10.1128/jcm.01717-21","title":"Specificity of SARS-CoV-2 Antibody Detection Assays against S and N Proteins among Pre-COVID-19 Sera from Patients with Protozoan and Helminth Parasitic Infections","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; McGill University; Institute of Infection and Immunity; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Fonds de recherche du Québec","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Antibody; Helminthiasis; Biology; Betacoronavirus; Immunology; Coronavirus Infections; Helminths; Medicine; Outbreak; Pathology; Infectious disease (medical specialty)","score_opus":0.053227669232057816,"score_gpt":0.4055113849367236,"score_spread":0.3522837157046658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4288058984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984139,0.00013240702,0.00018015565,0.000023111925,0.000008128103,0.000012901686,0.000055704862,0.0000069696816,0.0011666896],"genre_scores_gemma":[0.9995859,0.00003399395,0.0001166988,0.000044102926,0.000006425643,0.000005346375,0.00006559739,0.0000010115913,0.00014089885],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932325,0.00016548143,0.000119337834,0.0001285655,0.000121952384,0.00014141492],"domain_scores_gemma":[0.999281,0.00030178172,0.00012890209,0.000041410567,0.00015050202,0.00009644161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059918314,0.00036011476,0.00021555816,0.0005390612,0.0003452945,0.00047950557,0.00015638788,0.0003706114,0.001630701],"category_scores_gemma":[0.0018658433,0.00016360286,0.00021701242,0.00018801709,0.00039240744,0.00025799387,0.00026001135,0.00027421012,0.00039944358],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025251668,0.000092068134,0.9858744,0.000026231512,0.000022967282,0.0003472015,0.00036514658,0.000052979507,0.009562919,0.000026401924,0.00011164091,0.0032655299],"study_design_scores_gemma":[0.000030491288,0.0016650514,0.98085934,0.000023572607,0.000053038068,0.0044693323,0.00078492233,0.00059505366,0.010488131,0.000047616162,0.0009743948,0.000009118192],"about_ca_topic_score_codex":0.0014003057,"about_ca_topic_score_gemma":0.0012463968,"teacher_disagreement_score":0.001630701,"about_ca_system_score_codex":0.00018996469,"about_ca_system_score_gemma":0.00019157719,"threshold_uncertainty_score":0.005455196},"labels":[],"label_agreement":null},{"id":"W4304693869","doi":"10.1128/jcm.00665-22","title":"A Prolonged Outbreak of Human Adenovirus A31 (HAdV-A31) Infection on a Pediatric Hematopoietic Stem Cell Transplantation Ward with Whole Genome Sequencing Evidence of International Linkages","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Ontario; Hospital for Sick Children; Public Health Agency of Canada; Toronto Public Health; SickKids Foundation; University of Toronto","funders":"","keywords":"Outbreak; Virology; Genotyping; Hematopoietic stem cell transplantation; Mastadenovirus; Transplantation; Genotype; Medicine; Biology; Adenoviridae; Genetics; Gene; Internal medicine","score_opus":0.05002817448115937,"score_gpt":0.36017049103029486,"score_spread":0.3101423165491355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4304693869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99920636,0.00006258767,0.00012948508,0.00005945935,0.0000053351378,0.000013165926,0.00009252434,0.000008332465,0.00042269184],"genre_scores_gemma":[0.9993242,0.00009787624,0.00027651596,0.000045662764,0.000009460502,0.0000030571903,0.00013656118,0.0000022573136,0.00010447039],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9996309,0.00004220417,0.000035041914,0.00008421067,0.000107906846,0.00009961058],"domain_scores_gemma":[0.99933666,0.00010163388,0.0002137192,0.000034621684,0.00009115373,0.00022218874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035206164,0.0003013145,0.00016395673,0.00042102527,0.00086208683,0.00050112937,0.00025259532,0.00036596748,0.0012466266],"category_scores_gemma":[0.00077633804,0.00018921377,0.00020016513,0.00052958116,0.00058089755,0.00032705007,0.0006631315,0.0005575197,0.00012951037],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014232381,0.000053715645,0.9690521,0.000044002947,0.000026415508,0.016073544,0.0014357872,0.0002327918,0.0074910386,0.00010734818,0.0005383727,0.0048026047],"study_design_scores_gemma":[0.000010233201,0.0003912768,0.9659674,0.00004305763,0.000036224083,0.023794036,0.0034438518,0.00056855346,0.0038291595,0.00009372803,0.001806176,0.000016313885],"about_ca_topic_score_codex":0.018451393,"about_ca_topic_score_gemma":0.024040565,"teacher_disagreement_score":0.018451393,"about_ca_system_score_codex":0.00108159,"about_ca_system_score_gemma":0.001229026,"threshold_uncertainty_score":0.03668797},"labels":[],"label_agreement":null},{"id":"W4306793127","doi":"10.1128/jcm.00118-22","title":"Answer to October 2022 Photo Quiz","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Rabies epidemiology and control","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine","score_opus":0.036484173110239285,"score_gpt":0.3575984213884007,"score_spread":0.32111424827816143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4306793127","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00090227835,0.0029848749,0.001052822,0.08469002,0.19546495,0.0005230928,0.0041340133,0.0035213567,0.70672655],"genre_scores_gemma":[0.0017040513,0.0006534268,0.00034759546,0.024908813,0.010074641,0.00009800823,0.0008239817,0.0004632368,0.9609262],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99951637,0.00005515927,0.00002522862,0.000043617434,0.0002583482,0.00010132763],"domain_scores_gemma":[0.99699485,0.00041421817,0.00009638115,0.00008271432,0.0015997222,0.0008121259],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005374231,0.0008721424,0.000705332,0.0011863823,0.0015097477,0.0026522472,0.0008256185,0.004565594,0.8151842],"category_scores_gemma":[0.0070048203,0.00035890215,0.0008857623,0.00043952838,0.00035836847,0.0017549236,0.0015517893,0.0037359723,0.623087],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000023911085,0.00001166188,0.000025573901,0.000023825998,6.112213e-7,0.00002727681,0.0000033280987,0.0000050889494,0.000041119998,0.000116028816,0.99487126,0.004850393],"study_design_scores_gemma":[0.00003333026,0.00002657224,0.0003541486,0.00008335384,0.0000027348449,0.00009030895,0.000056278277,0.00003248237,0.00011608934,0.00041122033,0.9987821,0.000011397938],"about_ca_topic_score_codex":0.004491492,"about_ca_topic_score_gemma":0.007593254,"teacher_disagreement_score":0.8151842,"about_ca_system_score_codex":0.000921589,"about_ca_system_score_gemma":0.0008708062,"threshold_uncertainty_score":0.26361734},"labels":[],"label_agreement":null},{"id":"W4308054597","doi":"10.1128/jcm.01032-22","title":"A Practical Workflow for the Identification of Aspergillus, Fusarium, Mucorales by MALDI-TOF MS: Database, Medium, and Incubation Optimization","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Hospital for Sick Children; Public Health Ontario; Trillium Health Centre; University of Toronto","funders":"","keywords":"Mucorales; Aspergillus; Fusarium; Identification (biology); Biology; Aspergillus fumigatus; Microbiology; Agar; Database; Botany; Mucormycosis; Medicine; Bacteria; Genetics; Computer science","score_opus":0.04974612652984722,"score_gpt":0.36889041719152477,"score_spread":0.31914429066167754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308054597","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12440205,0.0032929278,0.82352614,0.0011005758,0.00040368288,0.0059531988,0.008434941,0.030247457,0.002638955],"genre_scores_gemma":[0.054730315,0.0007372716,0.93022335,0.00042946314,0.000063334875,0.0030755373,0.008636295,0.0011165862,0.0009879125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99528605,0.0006940199,0.0007230125,0.001346481,0.0016235652,0.00032686713],"domain_scores_gemma":[0.9946173,0.001645421,0.00054807577,0.0008654178,0.0019548112,0.0003690161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.009379705,0.002067,0.001988727,0.0034311607,0.0014604867,0.0024747835,0.0021427984,0.001510164,0.0035016844],"category_scores_gemma":[0.011368706,0.0013749205,0.0013381055,0.0016536997,0.00065390125,0.0022582307,0.0026586584,0.001921142,0.0049112635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012065982,0.00045076964,0.008484296,0.001059587,0.00015872456,0.00062556734,0.00050792267,0.0017602625,0.8537989,0.0007406315,0.0069082817,0.12429842],"study_design_scores_gemma":[0.000256216,0.0011562628,0.032963727,0.00037638622,0.00028155607,0.0036315445,0.0007804633,0.04934023,0.857979,0.0026695393,0.049916234,0.0006488682],"about_ca_topic_score_codex":0.0019748097,"about_ca_topic_score_gemma":0.0034390383,"teacher_disagreement_score":0.009379705,"about_ca_system_score_codex":0.0008228434,"about_ca_system_score_gemma":0.0025280518,"threshold_uncertainty_score":0.04960519},"labels":[],"label_agreement":null},{"id":"W4321611576","doi":"10.1128/jcm.01578-22","title":"Genomic Sequencing from Sputum for Tuberculosis Disease Diagnosis, Lineage Determination, and Drug Susceptibility Prediction","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; University of Oxford; Wellcome Trust; Academy of Medical Sciences; National Institute for Health and Care Research; Australian Government; International Seafood Sustainability Foundation","keywords":"Minion; Tuberculosis; Sputum; Mycobacterium tuberculosis; Multiplex; Biology; Drug resistance; Deep sequencing; DNA sequencing; Nanopore sequencing; Virology; Computational biology; Medicine; Genetics; Genome; Gene; Pathology","score_opus":0.06113864228723981,"score_gpt":0.3852413319730619,"score_spread":0.32410268968582207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321611576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.69060785,0.009848454,0.17985342,0.0027635756,0.0019005872,0.0019527503,0.026048858,0.005393349,0.08163111],"genre_scores_gemma":[0.80362546,0.001343801,0.14500235,0.0012470562,0.00023173593,0.0008584708,0.015211556,0.00077788933,0.03170162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976681,0.0007568668,0.00017407587,0.0006020108,0.0005526104,0.000246359],"domain_scores_gemma":[0.9979097,0.00088782964,0.0002402327,0.00033768697,0.00037582425,0.0002487759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028276125,0.00054172985,0.00041553794,0.0010896605,0.00036549522,0.0014351939,0.0005126751,0.0006773346,0.03370298],"category_scores_gemma":[0.005034169,0.00033540497,0.0003340957,0.0006894141,0.00043615059,0.0004917868,0.0006292099,0.000921118,0.007639567],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037567078,0.0007649073,0.12865154,0.0014124737,0.0009117963,0.0011876426,0.000933621,0.0013437207,0.54362607,0.004207367,0.02215681,0.29104728],"study_design_scores_gemma":[0.00044359788,0.0030967577,0.37015074,0.0008382076,0.00062396424,0.011253094,0.0012573311,0.046201672,0.2697869,0.008023647,0.28820175,0.00012236605],"about_ca_topic_score_codex":0.0007598487,"about_ca_topic_score_gemma":0.0023692448,"teacher_disagreement_score":0.03370298,"about_ca_system_score_codex":0.0003859545,"about_ca_system_score_gemma":0.00082814664,"threshold_uncertainty_score":0.11274767},"labels":[],"label_agreement":null},{"id":"W4366464227","doi":"10.1128/jcm.00620-22","title":"The Brief Case: an Infectious Hazard of Hunting","year":2023,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Parasitic Diseases Research and Treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Canadian Food Inspection Agency; Interior Health; BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control; Canadian Food Inspection Agency","keywords":"Hazard; Virology; Medicine; Biology; Ecology","score_opus":0.21062864392698072,"score_gpt":0.5576725399124828,"score_spread":0.34704389598550206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4366464227","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00017872921,0.995152,0.0001285368,0.0021778122,0.0011704677,0.0000031278723,0.000010212836,0.000006838668,0.001172387],"genre_scores_gemma":[0.0023275136,0.99002105,0.0002234138,0.0036211696,0.0030324322,0.000004085797,0.000023812878,0.0000027852038,0.00074367435],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995759,0.00013057393,0.00006942478,0.00006800658,0.000109599474,0.00004638075],"domain_scores_gemma":[0.9990669,0.000630425,0.00014181371,0.00002570942,0.00007403378,0.0000611195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006470602,0.0012903216,0.0014061299,0.0022768874,0.0006103302,0.0018508055,0.0010396225,0.0066282814,0.0028770182],"category_scores_gemma":[0.0021470166,0.00040297455,0.00059667614,0.0015853726,0.0017412199,0.002736898,0.001222861,0.0047743795,0.0015005906],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000129375,0.00007908491,0.0011849151,0.019192496,0.00013664151,0.03281133,0.0004815208,0.00033415228,0.00080783764,0.010442923,0.21687946,0.7175202],"study_design_scores_gemma":[0.000019567802,0.000056752087,0.0012849331,0.012857924,0.00014780283,0.08558392,0.00064502447,0.0000897501,0.00026247854,0.0044875015,0.89450794,0.00005637395],"about_ca_topic_score_codex":0.0019291883,"about_ca_topic_score_gemma":0.0033857664,"teacher_disagreement_score":0.0066282814,"about_ca_system_score_codex":0.000844861,"about_ca_system_score_gemma":0.0014218687,"threshold_uncertainty_score":0.0096246},"labels":[],"label_agreement":null},{"id":"W4381470564","doi":"10.1128/jcm.00335-23","title":"Optimization and Clinical Evaluation of an Automated Commercial Analyte-Specific Reagent Assay for <i>Mycoplasmoides genitalium</i> Macrolide Resistance Detection in Primary Clinical Specimens","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Blood groups and transfusion","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Mycoplasma genitalium; Detection limit; 23S ribosomal RNA; Analyte; Biology; Drug resistance; Molecular biology; Virology; Microbiology; Chemistry; Chromatography; Gene; Genetics; Chlamydia trachomatis; RNA","score_opus":0.08671896583461405,"score_gpt":0.4265369666322058,"score_spread":0.3398180007975917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381470564","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9489591,0.0013756852,0.044866364,0.00035344218,0.000118694545,0.0006280822,0.00092314003,0.0009565472,0.0018189264],"genre_scores_gemma":[0.9583974,0.00024813644,0.038842957,0.0004089282,0.00005949093,0.00025144021,0.0011523212,0.00007015998,0.00056921004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9948584,0.0017288103,0.0002851008,0.0009417229,0.0019693337,0.00021669561],"domain_scores_gemma":[0.99726427,0.00093400566,0.00051216705,0.0002414826,0.00089079846,0.00015728507],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030491278,0.000679039,0.00052973843,0.00054159435,0.00026720218,0.0010538598,0.0006114612,0.00067233073,0.00072121556],"category_scores_gemma":[0.0047199726,0.00028436148,0.00026831368,0.0004040878,0.0005142814,0.00032011603,0.00027490486,0.0004310725,0.0005037241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027027726,0.0008777192,0.14473018,0.00025220602,0.00011514723,0.0003163306,0.0004570918,0.0010869666,0.79423314,0.00026086313,0.0009046108,0.054063085],"study_design_scores_gemma":[0.00013140864,0.012704143,0.20350976,0.000080213365,0.00023681523,0.0028929736,0.0003909884,0.01878744,0.75500816,0.0002585201,0.005921361,0.00007828307],"about_ca_topic_score_codex":0.0006330283,"about_ca_topic_score_gemma":0.00086003396,"teacher_disagreement_score":0.0030491278,"about_ca_system_score_codex":0.00046886297,"about_ca_system_score_gemma":0.00070139527,"threshold_uncertainty_score":0.0161255},"labels":[],"label_agreement":null},{"id":"W4381598890","doi":"10.1128/jcm.00428-23","title":"Emergence of Inducible Macrolide Resistance in Mycobacterium chelonae Due to Broad-Host-Range Plasmid and Chromosomal Variants of the Novel 23S rRNA Methylase Gene, <i>erm</i> (55)","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Manitoba Health; University of Manitoba; University of Regina","funders":"","keywords":"23S ribosomal RNA; Biology; Plasmid; Microbiology; Genetics; Gene; Mycobacterium; Nontuberculous mycobacteria; Bacteria; RNA","score_opus":0.0530450851795872,"score_gpt":0.366854963500775,"score_spread":0.3138098783211878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381598890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99833447,0.00023045743,0.00069778034,0.000053599695,0.000008942317,0.00001589107,0.000078657395,0.000028638568,0.0005515574],"genre_scores_gemma":[0.99898523,0.00007606751,0.00028652113,0.000055651864,0.000007584849,0.0000072606795,0.000111506495,0.0000053577555,0.00046474356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9998356,0.000028232329,0.000018061954,0.000031003718,0.00003568734,0.000051366886],"domain_scores_gemma":[0.9997595,0.000041482144,0.00008091041,0.000038600363,0.00002884237,0.000050682927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014183905,0.00015842867,0.00015851887,0.00021322905,0.00013765188,0.00026733545,0.00013659878,0.0002922113,0.0010736336],"category_scores_gemma":[0.0004172046,0.00009879372,0.00022889765,0.00009263952,0.0001805945,0.00011732006,0.00029143866,0.0004044017,0.0003561253],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044155848,0.00020135958,0.03587953,0.00006140687,0.000017738317,0.005211695,0.00021657889,0.000042147047,0.9504029,0.00023649668,0.00023906412,0.00704946],"study_design_scores_gemma":[0.00015823578,0.0028130817,0.43300536,0.000048392743,0.00010404111,0.044720307,0.00055609405,0.0014812438,0.51158094,0.0002913384,0.005210986,0.000030026684],"about_ca_topic_score_codex":0.0006014787,"about_ca_topic_score_gemma":0.00047342948,"teacher_disagreement_score":0.0010736336,"about_ca_system_score_codex":0.00015110013,"about_ca_system_score_gemma":0.0000917492,"threshold_uncertainty_score":0.0035916567},"labels":[],"label_agreement":null},{"id":"W4383872779","doi":"10.1128/jcm.00562-23","title":"Terbinafine-Resistant Dermatophytes and the Presence of Trichophyton indotineae in North America","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Astellas Pharma","keywords":"Terbinafine; Trichophyton rubrum; Posaconazole; Dermatophyte; Itraconazole; Trichophyton; Broth microdilution; Voriconazole; Microbiology; Biology; Microsporum; Minimum inhibitory concentration; Veterinary medicine; Medicine; Antifungal; Antibiotics","score_opus":0.026272563400629917,"score_gpt":0.34947937958290076,"score_spread":0.3232068161822709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383872779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99524105,0.0016642321,0.00012219694,0.00015603717,0.000008386505,0.000021615913,0.000424696,0.000008108945,0.00235364],"genre_scores_gemma":[0.99846554,0.0007060669,0.00022570009,0.000069539325,0.000010745524,0.000009086982,0.00021541424,0.0000014911221,0.0002965335],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99967647,0.00009814015,0.000034740635,0.000053968157,0.00007317359,0.00006344725],"domain_scores_gemma":[0.9988524,0.00022320938,0.00054851384,0.000031362666,0.00018021758,0.00016421583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034630296,0.00016812242,0.00014637348,0.001118248,0.00037317557,0.00038769504,0.00025114106,0.00029576756,0.000986944],"category_scores_gemma":[0.0007351888,0.00016933728,0.000105788895,0.0012829101,0.0002701637,0.00030786163,0.00024346114,0.00022648899,0.00009953668],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009880969,0.00007132132,0.9851999,0.000065491644,0.000028468045,0.0026287818,0.00063881534,0.0000522702,0.0033466027,0.00003898709,0.0004277603,0.007402841],"study_design_scores_gemma":[0.0000017464045,0.000037823036,0.9962309,0.00001803159,0.000010325226,0.0020190687,0.0006652514,0.00007828129,0.00016879404,0.0000091793045,0.00075811933,0.000002351082],"about_ca_topic_score_codex":0.060296074,"about_ca_topic_score_gemma":0.11006303,"teacher_disagreement_score":0.060296074,"about_ca_system_score_codex":0.00066595484,"about_ca_system_score_gemma":0.0005590082,"threshold_uncertainty_score":0.11989021},"labels":[],"label_agreement":null},{"id":"W4387033226","doi":"10.1128/jcm.01268-22","title":"Transfusion-transmitted <i>Babesia</i> spp.: a changing landscape of epidemiology, regulation, and risk mitigation","year":2023,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Canadian Blood Services; Centre Hospitalier Universitaire Sainte-Justine; Université de Sherbrooke; Héma-Québec; Université de Montréal; University of Alberta","funders":"National Center for Advancing Translational Sciences; National Heart, Lung, and Blood Institute; California Department of Public Health","keywords":"Babesia; Babesiosis; Epidemiology; Biology; Transmission (telecommunications); Virology; Immunology; Medicine; Pathology","score_opus":0.05641326965693775,"score_gpt":0.3717904419440026,"score_spread":0.31537717228706486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387033226","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026487003,0.989139,0.0009164215,0.0034167182,0.0004072118,0.000018395804,0.0001326447,0.00003486778,0.0032860811],"genre_scores_gemma":[0.011128449,0.984928,0.0015041175,0.0011393323,0.00029896802,0.000022478205,0.00012860639,0.000008015944,0.0008420723],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99928707,0.00019762572,0.00010616537,0.00010569924,0.00022477115,0.000078705576],"domain_scores_gemma":[0.99875367,0.00044945514,0.00025073698,0.000027380724,0.00045446662,0.000064298176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001171832,0.00040460122,0.00066473964,0.001273776,0.00022229445,0.0015971267,0.00045042246,0.0006502954,0.0017428875],"category_scores_gemma":[0.0016876865,0.00018747861,0.0005294184,0.0011994416,0.0004911361,0.001325396,0.0004361452,0.0009137488,0.0005634148],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009164204,0.000063800486,0.0035454659,0.0278082,0.00018843253,0.00042194975,0.00041175136,0.0011162278,0.0064280746,0.0072321636,0.036474533,0.9162178],"study_design_scores_gemma":[0.0000100092775,0.00020882253,0.0070954715,0.010622693,0.00017564977,0.0012959078,0.00048481187,0.00036987494,0.002214895,0.0027070516,0.9747747,0.00004016254],"about_ca_topic_score_codex":0.0038297737,"about_ca_topic_score_gemma":0.0033883082,"teacher_disagreement_score":0.0038297737,"about_ca_system_score_codex":0.00072080444,"about_ca_system_score_gemma":0.0019839525,"threshold_uncertainty_score":0.00761497},"labels":[],"label_agreement":null},{"id":"W4387931240","doi":"10.1128/jcm.00260-23","title":"Whole genome sequencing-based identification of human tuberculosis caused by animal-lineage <i>Mycobacterium orygis</i>","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Provincial Laboratory of Public Health; BC Centre for Disease Control; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency; Public Health Agency of Canada","keywords":"Biology; Genetics; Phylogenetic tree; Single-nucleotide polymorphism; Mycobacterium tuberculosis complex; Genome; Whole genome sequencing; Mycobacterium tuberculosis; Reference genome; Tuberculosis; SNP; Identification (biology); Genotype; Gene; Medicine","score_opus":0.07479047558059934,"score_gpt":0.40752345835387177,"score_spread":0.33273298277327246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387931240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918785,0.0004933889,0.0017536603,0.00005630351,0.000009535594,0.00005069208,0.005033973,0.000033987388,0.00068997894],"genre_scores_gemma":[0.9872974,0.00030027545,0.00533947,0.00010155006,0.0000066647167,0.000018048755,0.0063389908,0.000015192415,0.0005823284],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.999793,0.00002520429,0.000015820164,0.00007006415,0.00006013933,0.000035744437],"domain_scores_gemma":[0.9998209,0.000028435328,0.00004476433,0.00001580381,0.00006559855,0.000024588104],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002236973,0.00021480456,0.00024639207,0.0006156619,0.00029052515,0.0003480965,0.00015393726,0.0002982242,0.0005544128],"category_scores_gemma":[0.00035948688,0.0000871279,0.00028362067,0.00074261223,0.00016810416,0.00005472323,0.00015157505,0.00016829949,0.00017295672],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011199801,0.00011836198,0.43528616,0.0002814255,0.0003089639,0.0010965313,0.0005819112,0.001367623,0.529174,0.00015331866,0.0014556348,0.029056158],"study_design_scores_gemma":[0.0000265947,0.0002028809,0.9535382,0.00003769861,0.00020428441,0.0011549352,0.0005514233,0.003058121,0.035421714,0.000054667857,0.0057387585,0.000010818832],"about_ca_topic_score_codex":0.056327738,"about_ca_topic_score_gemma":0.072974965,"teacher_disagreement_score":0.056327738,"about_ca_system_score_codex":0.00038860214,"about_ca_system_score_gemma":0.00064138067,"threshold_uncertainty_score":0.11199975},"labels":[],"label_agreement":null},{"id":"W4387931420","doi":"10.1128/jcm.00913-23","title":"Microbiological characterization of <i>Pneumocystis jirovecii</i> pneumonia using quantitative PCR from nasopharyngeal specimens: a retrospective study in a Canadian province from 2019 to 2023","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"","keywords":"Pneumocystis jirovecii; Bronchoalveolar lavage; Retrospective cohort study; Pneumonia; Medicine; Pneumocystis carinii; Bronchoscopy; Pneumocystis pneumonia; Internal medicine; Pathology; Gastroenterology; Immunology; Lung","score_opus":0.062076317134802536,"score_gpt":0.3706008649880122,"score_spread":0.30852454785320965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387931420","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970783,0.00041784998,0.00017860121,0.00006339337,0.000008426444,0.000043167613,0.0010004004,0.000009653414,0.0012003063],"genre_scores_gemma":[0.99894696,0.00019401134,0.00014521302,0.000055061326,0.0000037499303,0.00000913976,0.00042425207,0.00000438745,0.00021735764],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984456,0.00009696776,0.00008652171,0.00028100592,0.0006362631,0.00045363995],"domain_scores_gemma":[0.9976762,0.00016837717,0.0004829079,0.00009072307,0.0011414052,0.00044046447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085957895,0.0005746996,0.000490642,0.0018672335,0.0029864744,0.0012260713,0.0009884095,0.00053088187,0.0009634849],"category_scores_gemma":[0.0019873562,0.00069007213,0.00045481598,0.0029068263,0.0015954777,0.0002972993,0.00059587345,0.00069763174,0.00021712916],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000052202493,0.000028739958,0.9965479,0.000023684895,0.000023241368,0.00020216314,0.00047660593,0.00003951145,0.0009873697,0.000022452869,0.00021284574,0.0013833827],"study_design_scores_gemma":[0.0000031511042,0.000052516454,0.997681,0.000015161363,0.000021334996,0.00042235767,0.0009768219,0.000116204355,0.00028615742,0.0000057708994,0.00041131873,0.000008204119],"about_ca_topic_score_codex":0.9646937,"about_ca_topic_score_gemma":0.9655746,"teacher_disagreement_score":0.035306275,"about_ca_system_score_codex":0.013239513,"about_ca_system_score_gemma":0.017988775,"threshold_uncertainty_score":0.0960598},"labels":[],"label_agreement":null},{"id":"W4387949418","doi":"10.1128/jcm.00606-23","title":"Use of genome sequencing to resolve differences in gradient diffusion and agar dilution antimicrobial susceptibility testing performance of <i>Neisseria gonorrhoeae</i> isolates in Alberta, Canada","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Alberta Health Services; Public Health Agency of Canada; Provincial Laboratory of Public Health; University of Calgary; University of Alberta","funders":"Alberta Precision Laboratories","keywords":"Cefixime; Agar dilution; Neisseria gonorrhoeae; Azithromycin; Tetracycline; Penicillin; Ciprofloxacin; Microbiology; Biology; Ceftriaxone; Minimum inhibitory concentration; Antimicrobial; Antibiotics","score_opus":0.08599119663910547,"score_gpt":0.32339130570106317,"score_spread":0.2374001090619577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387949418","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98916245,0.0010831034,0.0019011768,0.00023024234,0.000035822482,0.00009824262,0.0037234558,0.0000608411,0.0037046159],"genre_scores_gemma":[0.9944213,0.0003827458,0.0023535637,0.00013821821,0.000008523562,0.00001815203,0.0018736831,0.000020212101,0.00078361447],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969112,0.00021112639,0.00017991127,0.0003936007,0.001791498,0.000512629],"domain_scores_gemma":[0.99348664,0.00044188357,0.0009716026,0.00018726301,0.0044722436,0.00044029352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019483903,0.0005532754,0.0003497262,0.002765713,0.0010726935,0.0013070195,0.0010287978,0.0003902689,0.0007697656],"category_scores_gemma":[0.004718383,0.00029152623,0.00035653514,0.0029287753,0.00071697537,0.00023204366,0.0006911054,0.00038539086,0.0001777931],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018592601,0.000033174918,0.9732212,0.00007100572,0.00007086082,0.00034690837,0.00088704814,0.00093847763,0.006045189,0.00016159586,0.00089715736,0.017141478],"study_design_scores_gemma":[0.000006269731,0.00007472667,0.9903171,0.00006312957,0.000060779534,0.00027982937,0.0012109565,0.0019491937,0.0029616198,0.00004773216,0.0030124974,0.000015991853],"about_ca_topic_score_codex":0.94955873,"about_ca_topic_score_gemma":0.964919,"teacher_disagreement_score":0.050441265,"about_ca_system_score_codex":0.015251113,"about_ca_system_score_gemma":0.016521644,"threshold_uncertainty_score":0.11065513},"labels":[],"label_agreement":null},{"id":"W4387949691","doi":"10.1128/jcm.00873-23","title":"A conceptual framework for nomenclatural stability and validity of medically important fungi: a proposed global consensus guideline for fungal name changes supported by ABP, ASM, CLSI, ECMM, ESCMID-EFISG, EUCAST-AFST, FDLC, IDSA, ISHAM, MMSA, and MSGERC","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"International Development Research Centre; Calgary Laboratory Services; Institut National de Santé Publique du Québec; Agriculture and Agri-Food Canada; Public Health Ontario; University of Toronto; London Health Sciences Centre","funders":"","keywords":"Taxon; Biology; Guideline; Evolutionary biology; Genus; Ecology; Zoology; Medicine; Pathology","score_opus":0.058706624312108054,"score_gpt":0.36405511356033515,"score_spread":0.3053484892482271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387949691","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010808104,0.035050362,0.60392904,0.2911581,0.014624305,0.0045453934,0.0014521952,0.0026860656,0.0357464],"genre_scores_gemma":[0.062377233,0.009735272,0.8874594,0.027809657,0.0031015615,0.004349531,0.0019239531,0.0007128107,0.0025306337],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","domain_scores_codex":[0.8085372,0.08886704,0.053037927,0.0114116045,0.032211736,0.0059345555],"domain_scores_gemma":[0.6649453,0.11828713,0.028707776,0.023761362,0.15010388,0.014194595],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.31664068,0.0028617803,0.0040938337,0.02695222,0.011710099,0.02112462,0.026033344,0.012854468,0.002443195],"category_scores_gemma":[0.24728577,0.0024085015,0.0055247988,0.013031936,0.03193501,0.02058648,0.017857902,0.023109902,0.0041943598],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021967285,0.00032577055,0.01685525,0.006948834,0.00043236575,0.0022275108,0.028257564,0.0042651733,0.0053362637,0.36288205,0.24031177,0.33193773],"study_design_scores_gemma":[0.00015377834,0.00039430038,0.010488283,0.019790877,0.0005001557,0.003952761,0.014490411,0.009223345,0.0024424694,0.25558627,0.6823158,0.0006614918],"about_ca_topic_score_codex":0.022013187,"about_ca_topic_score_gemma":0.019562168,"teacher_disagreement_score":0.31664068,"about_ca_system_score_codex":0.01422312,"about_ca_system_score_gemma":0.059238136,"threshold_uncertainty_score":0.8427037},"labels":[],"label_agreement":null},{"id":"W4389950736","doi":"10.1128/jcm.01161-23","title":"First Canadian report of transmission of fluconazole-resistant <i>Candida parapsilosis</i> within two hospital networks confirmed by genomic analysis","year":2023,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Sinai Health System; University Health Network; University of Toronto; Public Health Ontario","funders":"Public Health Ontario; Public Health Agency; Public Health Agency of Canada","keywords":"Candida parapsilosis; Outbreak; Biology; Fluconazole; Genotyping; Microbiology; Drug resistance; Typing; Molecular epidemiology; Virology; Candida albicans; Antifungal; Genetics; Gene; Genotype","score_opus":0.02043619914617155,"score_gpt":0.3338348680147918,"score_spread":0.3133986688686202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389950736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.979863,0.0004836185,0.0007128242,0.0013728036,0.00010749748,0.0002812393,0.0014650117,0.000054617423,0.015659506],"genre_scores_gemma":[0.9963458,0.00030003765,0.0003720977,0.0010294515,0.000047382342,0.000015861928,0.00047546817,0.000015425456,0.0013984106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9988809,0.00006022548,0.00006880866,0.00019560232,0.00038086335,0.00041364093],"domain_scores_gemma":[0.9981034,0.00009665012,0.00025768965,0.00008663355,0.0007700033,0.0006855275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003008099,0.0005966537,0.000331539,0.0012706503,0.005479098,0.0011969558,0.0011460596,0.0011946282,0.0041494956],"category_scores_gemma":[0.0016484351,0.00053965475,0.0004216814,0.0013018808,0.0008285559,0.0003747463,0.0010025611,0.00157751,0.0005057966],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004644135,0.00048790738,0.8379055,0.00025835578,0.00019277346,0.102502465,0.009012242,0.00022942398,0.013289165,0.0007577226,0.013501226,0.021398775],"study_design_scores_gemma":[0.00006552052,0.0005697348,0.9114271,0.0001688618,0.00013937152,0.057329863,0.009937663,0.0006986317,0.002467448,0.00010996969,0.016998095,0.000087782566],"about_ca_topic_score_codex":0.86710143,"about_ca_topic_score_gemma":0.90801704,"teacher_disagreement_score":0.13289857,"about_ca_system_score_codex":0.010206424,"about_ca_system_score_gemma":0.011302948,"threshold_uncertainty_score":0.26736242},"labels":[],"label_agreement":null},{"id":"W4391255423","doi":"10.1128/jcm.00098-24","title":"Erratum for McTaggart et al., “First Canadian report of transmission of fluconazole-resistant <i>Candida parapsilosis</i> within two hospital networks confirmed by genomic analysis”","year":2024,"lang":"en","type":"erratum","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Candida parapsilosis; Fluconazole; Genome; Biology; Computational biology; Antifungal; Genetics; Microbiology; Gene","score_opus":0.0199142708523779,"score_gpt":0.3496414275581126,"score_spread":0.3297271567057347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391255423","genre_codex":"editorial","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00024062346,0.0007902458,0.0005626091,0.06916103,0.92359734,0.00002778216,0.0019259095,0.00023601124,0.0034585055],"genre_scores_gemma":[0.017081432,0.0109604895,0.0069262353,0.35046023,0.3959071,0.0002357442,0.011947971,0.0018840858,0.20459671],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99859685,0.0001907789,0.00025316022,0.00023240886,0.0005922346,0.00013453589],"domain_scores_gemma":[0.9911425,0.0026600023,0.00047550563,0.00036439943,0.004632899,0.00072471314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016444465,0.0019865336,0.0013423306,0.0030842903,0.0029486415,0.0020211278,0.0023573404,0.0055430103,0.036046617],"category_scores_gemma":[0.01911394,0.0012450418,0.0013731649,0.0017999104,0.0015355984,0.0015606025,0.0010629887,0.008789987,0.022748718],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015907754,0.000004118237,0.0000520161,0.000026612337,0.000003377901,0.00011896094,0.00000924039,0.000013964407,0.000026185364,0.00012085101,0.99812514,0.0014836192],"study_design_scores_gemma":[0.00006554055,0.00002540436,0.0018233196,0.0003132226,0.000034272034,0.00072850136,0.00010039181,0.00016064626,0.00020636717,0.00055835897,0.99594903,0.000034932993],"about_ca_topic_score_codex":0.053039093,"about_ca_topic_score_gemma":0.074819885,"teacher_disagreement_score":0.053039093,"about_ca_system_score_codex":0.0032716386,"about_ca_system_score_gemma":0.0042376276,"threshold_uncertainty_score":0.120587945},"labels":[],"label_agreement":null},{"id":"W4391434576","doi":"10.1128/jcm.01518-23","title":"The microbiological outcomes of culture-negative blood specimens using 16S rRNA broad-range PCR sequencing: a retrospective study in a Canadian province from 2018 to 2022","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Institut National de Santé Publique du Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Cidara Therapeutics; AstraZeneca; Pfizer","keywords":"Fastidious organism; 16S ribosomal RNA; Blood culture; Biology; Ribosomal RNA; Polymerase chain reaction; Sepsis; Microbiology; Clinical microbiology; Bacteria; Genetics; Immunology; Antibiotics; Gene","score_opus":0.05603961764042869,"score_gpt":0.36226138736804586,"score_spread":0.30622176972761717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391434576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973189,0.000338093,0.00010780522,0.00007429872,0.0000084799985,0.000040817456,0.0011619814,0.000006171042,0.0009435133],"genre_scores_gemma":[0.9988709,0.00025853916,0.00012002119,0.00006313975,0.000004998599,0.00000931984,0.00044737404,0.0000045872,0.00022113771],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99819994,0.00010051272,0.000119065764,0.00027895902,0.0007385136,0.00056297774],"domain_scores_gemma":[0.99694866,0.00016971705,0.0006637534,0.00010973935,0.0014631376,0.0006450975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009165748,0.00075090874,0.00063775387,0.0017882173,0.002816995,0.0015068428,0.0011010424,0.0005716948,0.00096899044],"category_scores_gemma":[0.002847917,0.0006528949,0.0004724528,0.003651166,0.0015732925,0.00039413577,0.0009114127,0.0008340509,0.00022288531],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000791467,0.000027986407,0.9965934,0.000026697153,0.000026848611,0.00049690687,0.0006266375,0.00005124888,0.00040207623,0.000021005755,0.00021860673,0.0014293236],"study_design_scores_gemma":[0.0000038130745,0.00009304725,0.9964824,0.000030115429,0.000024970068,0.0006608309,0.0019155752,0.0001430045,0.00017676794,0.000011924185,0.0004438562,0.000013716645],"about_ca_topic_score_codex":0.9539805,"about_ca_topic_score_gemma":0.95945007,"teacher_disagreement_score":0.046019495,"about_ca_system_score_codex":0.019438775,"about_ca_system_score_gemma":0.022035675,"threshold_uncertainty_score":0.14103884},"labels":[],"label_agreement":null},{"id":"W4391434590","doi":"10.1128/jcm.01069-23","title":"Retrospective validation of MetaSystems’ deep-learning-based digital microscopy platform with assistance compared to manual fluorescence microscopy for detection of mycobacteria","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; Vancouver Coastal Health","funders":"British Columbia Centre for Disease Control","keywords":"Concordance; Medicine; Nuclear medicine; Microscopy; Pathology; Internal medicine","score_opus":0.033265461844622805,"score_gpt":0.38444980982031407,"score_spread":0.35118434797569126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391434590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99003345,0.0014216054,0.0070247105,0.000053646374,0.000047677866,0.00013592046,0.00048408803,0.00012033964,0.0006786544],"genre_scores_gemma":[0.9931179,0.00016635114,0.0053803534,0.000087152825,0.000020210073,0.000106702166,0.00088951294,0.00003843847,0.00019336343],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99075645,0.003662283,0.00079131534,0.0021160042,0.002341618,0.00033240073],"domain_scores_gemma":[0.9840715,0.004318596,0.0022401845,0.0037896514,0.005064691,0.0005155221],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.014651961,0.00066277356,0.0005883247,0.0011784267,0.000343769,0.0008140136,0.0011215797,0.00084533525,0.0008722101],"category_scores_gemma":[0.021121494,0.0005991294,0.0005111361,0.0005072312,0.00088165904,0.0006667576,0.0012770017,0.00046063532,0.00064610044],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034436048,0.0002850168,0.9079954,0.00049329596,0.00047114733,0.00069734035,0.00062588515,0.0012237029,0.040127777,0.00025967567,0.00093820656,0.043439034],"study_design_scores_gemma":[0.00017919533,0.006117417,0.8926612,0.00032942553,0.0008242372,0.006025299,0.00045362604,0.017906005,0.06725748,0.00025929764,0.007893582,0.00009313747],"about_ca_topic_score_codex":0.000840008,"about_ca_topic_score_gemma":0.001178392,"teacher_disagreement_score":0.014651961,"about_ca_system_score_codex":0.0006308008,"about_ca_system_score_gemma":0.0006305391,"threshold_uncertainty_score":0.077487886},"labels":[],"label_agreement":null},{"id":"W4391556212","doi":"10.1128/jcm.00103-22","title":"Rapid, high-throughput, cost-effective whole-genome sequencing of SARS-CoV-2 using a condensed library preparation of the Illumina DNA Prep kit","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Centre for Disease Control","funders":"British Columbia Centre for Disease Control","keywords":"Turnaround time; Illumina dye sequencing; DNA sequencing; Workflow; Consumables; Whole genome sequencing; Computational biology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Throughput; Protocol (science); Computer science; Coronavirus disease 2019 (COVID-19); Genome; Biology; DNA; Medicine; Chemistry; Genetics; Gene; Operating system; Database","score_opus":0.12399033916753015,"score_gpt":0.44005441607636553,"score_spread":0.31606407690883537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391556212","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.17930147,0.0037838088,0.76569474,0.00086805655,0.0005134748,0.0019502629,0.018427908,0.008103761,0.02135647],"genre_scores_gemma":[0.14043362,0.003211674,0.7810262,0.000978235,0.00014817849,0.0022473522,0.050134473,0.001271117,0.020549132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851006,0.00021172491,0.00007815837,0.0004279139,0.00064237975,0.00012967527],"domain_scores_gemma":[0.9995566,0.00009300697,0.000060616214,0.00009416445,0.00014660867,0.000049055234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011551715,0.0009835974,0.0007773216,0.0008524899,0.0006093276,0.001324895,0.00066752435,0.00061264157,0.0055507068],"category_scores_gemma":[0.00090389285,0.00076549756,0.0012078413,0.0007431871,0.00043330775,0.0004957261,0.0010975421,0.0013562131,0.0054187938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000120569275,0.00008575086,0.0008574644,0.00036379055,0.00006438564,0.000050562376,0.00007971141,0.000563366,0.9619564,0.00061051635,0.0039493274,0.03129824],"study_design_scores_gemma":[0.00006187939,0.0004847948,0.009758661,0.00008182659,0.00010875427,0.0003856453,0.00006712973,0.006151049,0.8966777,0.00063963194,0.085488304,0.000094669005],"about_ca_topic_score_codex":0.0017450276,"about_ca_topic_score_gemma":0.00763078,"teacher_disagreement_score":0.0055507068,"about_ca_system_score_codex":0.0005517274,"about_ca_system_score_gemma":0.001531065,"threshold_uncertainty_score":0.018568993},"labels":[],"label_agreement":null},{"id":"W4391811757","doi":"10.1128/jcm.00822-23","title":"Photo Quiz: Were those hyphae or pseudohyphae in blood culture?","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Canadian Electricity Association; University of Ottawa","funders":"","keywords":"Hypha; Microbiology; Blood culture; Biology; Pathology; Medicine; Antibiotics","score_opus":0.04653644496715551,"score_gpt":0.415775055728875,"score_spread":0.3692386107617195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391811757","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.18028997,0.017541746,0.025483849,0.19776218,0.030402001,0.0038749133,0.036803722,0.009386325,0.49845544],"genre_scores_gemma":[0.40979728,0.00832391,0.025714144,0.064785734,0.0064065433,0.00056992436,0.0104773315,0.0014134642,0.4725117],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9998729,0.000020013747,0.000010399406,0.000020684054,0.000040219296,0.00003578997],"domain_scores_gemma":[0.9996055,0.00010630894,0.000028744846,0.000023819499,0.00015757448,0.000078138975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017508173,0.0006535608,0.000425479,0.0010295847,0.00060858676,0.00057315076,0.0005416529,0.0017660486,0.17670333],"category_scores_gemma":[0.0012683094,0.00026792922,0.00047033455,0.00029645526,0.00018875011,0.00063875783,0.00042091572,0.0012274482,0.027294569],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014680291,0.00048339236,0.011369589,0.00064389856,0.00005327221,0.075155206,0.00024910996,0.0003671081,0.017736215,0.0013473661,0.79905665,0.092070125],"study_design_scores_gemma":[0.00026940144,0.0010547071,0.040263254,0.0012134737,0.00014086303,0.10671776,0.0019699347,0.0036339592,0.017977158,0.004802571,0.8218147,0.00014222166],"about_ca_topic_score_codex":0.003813005,"about_ca_topic_score_gemma":0.00399174,"teacher_disagreement_score":0.17670333,"about_ca_system_score_codex":0.0003461,"about_ca_system_score_gemma":0.00020036772,"threshold_uncertainty_score":0.59113157},"labels":[],"label_agreement":null},{"id":"W4391811760","doi":"10.1128/jcm.00824-23","title":"Answer to the Photo Quiz: Were those hyphae or pseudohyphae in blood culture?","year":2024,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Canadian Electricity Association; University of Ottawa","funders":"","keywords":"Hypha; Microbiology; Blood culture; Medicine; Biology; Antibiotics","score_opus":0.07045820884156043,"score_gpt":0.4090622388880718,"score_spread":0.3386040300465114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391811760","genre_codex":"commentary","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00062868244,0.0008645831,0.0002131326,0.9647341,0.026226789,0.000035222514,0.000117375355,0.000065630964,0.0071144686],"genre_scores_gemma":[0.007863536,0.0015985214,0.000641066,0.9050138,0.03645908,0.000054724587,0.000102519596,0.00007508839,0.048191734],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991872,0.00023123219,0.00010173387,0.0000871932,0.00025971446,0.00013304],"domain_scores_gemma":[0.99712235,0.0010420925,0.00017184697,0.000075638025,0.00093947,0.0006484751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090091565,0.00080271135,0.0008865095,0.00061282265,0.0022081672,0.0016513601,0.00096836843,0.02089792,0.032193158],"category_scores_gemma":[0.012984264,0.00043804038,0.0009809475,0.00030095762,0.0011721891,0.0026934787,0.00087548856,0.01691737,0.01828507],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004669239,0.000031487834,0.0004921586,0.000025351834,0.000005784513,0.0045786663,0.00004841914,0.000028404975,0.00014155038,0.00050770293,0.9910739,0.0030199117],"study_design_scores_gemma":[0.00016915315,0.00016548249,0.0027021489,0.00044284185,0.000039630097,0.027462557,0.0009072112,0.00069116417,0.00054930896,0.007179918,0.9595889,0.00010166079],"about_ca_topic_score_codex":0.0077965884,"about_ca_topic_score_gemma":0.0067628897,"teacher_disagreement_score":0.032193158,"about_ca_system_score_codex":0.0023264207,"about_ca_system_score_gemma":0.0013628678,"threshold_uncertainty_score":0.10769683},"labels":[],"label_agreement":null},{"id":"W4392044958","doi":"10.1128/jcm.01687-23","title":"Clinical validation of loop-mediated isothermal amplification for the detection of <i>Escherichia coli</i> sequence type complex 131","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Biosensors and Analytical Detection","field":"Engineering","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Loop-mediated isothermal amplification; Escherichia coli; Microbiology; Biology; Enterobacteriaceae; Medicine; Gene; Genetics; DNA","score_opus":0.0889823741972007,"score_gpt":0.36415416574723575,"score_spread":0.275171791550035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392044958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824948,0.0010892879,0.011137817,0.0002337624,0.00011076907,0.000804663,0.0004703106,0.00022398664,0.0034346369],"genre_scores_gemma":[0.99369425,0.00018447373,0.0049431873,0.00019100925,0.00002364831,0.000113931936,0.0004677936,0.00002399718,0.0003576207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961683,0.0016608265,0.00021586847,0.0006673736,0.0010960144,0.00019156135],"domain_scores_gemma":[0.99748516,0.0010370625,0.00026337232,0.00017092294,0.0008419407,0.00020145715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0044552903,0.00067475997,0.0005013262,0.0004913042,0.00034677226,0.0007206522,0.0004638176,0.0009643524,0.0010084136],"category_scores_gemma":[0.008280235,0.00040605696,0.0002662554,0.00028098037,0.00088408095,0.00034701152,0.00030289486,0.0005376409,0.00070425397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076848576,0.0030138753,0.27232888,0.00085344235,0.0001351495,0.0018360375,0.0025732187,0.0016873118,0.6430567,0.0005468084,0.0026968,0.06358699],"study_design_scores_gemma":[0.0011850569,0.05828691,0.4749833,0.00043519103,0.0003297628,0.01642444,0.0010376116,0.027132219,0.39803156,0.00041854187,0.021544414,0.0001909462],"about_ca_topic_score_codex":0.0020682416,"about_ca_topic_score_gemma":0.0012061662,"teacher_disagreement_score":0.0044552903,"about_ca_system_score_codex":0.00044581766,"about_ca_system_score_gemma":0.00053041754,"threshold_uncertainty_score":0.023562074},"labels":[],"label_agreement":null},{"id":"W4392111183","doi":"10.1128/jcm.01531-23","title":"This is giving me a complex: a practical attempt to streamline nontuberculous mycobacteria nomenclature for clinical purposes","year":2024,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Nontuberculous mycobacteria; Nomenclature; Mycobacterium avium complex; Medicine; Microbiology; Mycobacterium Infections; Computational biology; Mycobacterium; Biology; Tuberculosis; Pathology; Taxonomy (biology); Zoology","score_opus":0.19126081385805294,"score_gpt":0.5038445843947287,"score_spread":0.31258377053667574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392111183","genre_codex":"commentary","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00021343124,0.00022018484,0.00033488974,0.977387,0.02037956,0.000009957648,0.00000915638,0.000019531093,0.0014262401],"genre_scores_gemma":[0.0018649246,0.00028389203,0.0010959192,0.9454595,0.044460498,0.00002541119,0.000012726288,0.00004400754,0.006753292],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9870242,0.0044049257,0.002409397,0.0013522655,0.0035103257,0.00129889],"domain_scores_gemma":[0.9591682,0.014902698,0.0027906792,0.0018674255,0.012451807,0.008819226],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0092942985,0.0008177318,0.0014829413,0.001422007,0.009279263,0.01083315,0.002403388,0.07737244,0.008321025],"category_scores_gemma":[0.0683474,0.0013820279,0.0014614571,0.0010843435,0.0065378556,0.0096856905,0.004727252,0.08362907,0.010141745],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029323272,0.000036943336,0.0008100382,0.00004866722,0.000015374093,0.0027060267,0.00060037995,0.00006759714,0.00040064778,0.004398565,0.98303384,0.007852781],"study_design_scores_gemma":[0.000074793126,0.00007610147,0.0013320259,0.00035128073,0.000034584566,0.0058641285,0.0018586596,0.00068254565,0.00021231569,0.017166618,0.9722377,0.000109172],"about_ca_topic_score_codex":0.0062293517,"about_ca_topic_score_gemma":0.014782956,"teacher_disagreement_score":0.07737244,"about_ca_system_score_codex":0.0055744746,"about_ca_system_score_gemma":0.009720826,"threshold_uncertainty_score":0.049153566},"labels":[],"label_agreement":null},{"id":"W4392458543","doi":"10.1128/jcm.01625-23","title":"Reply to Kidd et al., “Inconsistencies within the proposed framework for stabilizing fungal nomenclature risk further confusion”","year":2024,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Public Health Ontario; University of Toronto; London Health Sciences Centre; Institut National de Santé Publique du Québec","funders":"","keywords":"Confusion; Nomenclature; Computational biology; Biology; Taxonomy (biology); Psychology; Zoology","score_opus":0.0331374000150437,"score_gpt":0.33730965235152544,"score_spread":0.3041722523364817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392458543","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001576507,0.0006386416,0.00006983942,0.98396444,0.01424485,0.0000069986268,0.000053052645,0.000024262046,0.0008402402],"genre_scores_gemma":[0.0009539528,0.00026129404,0.00010999658,0.9864631,0.010006801,0.00001762915,0.000018896428,0.000015645575,0.0021527065],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963075,0.0010154477,0.0004960786,0.0005797031,0.0010186272,0.0005825718],"domain_scores_gemma":[0.986725,0.007272288,0.0008034143,0.0003384299,0.0029648503,0.0018960533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006794567,0.0009943936,0.0016689268,0.0008888537,0.004798761,0.00438646,0.0025390838,0.0675509,0.0070316405],"category_scores_gemma":[0.038570736,0.0011315176,0.0012602108,0.0008808824,0.003887531,0.0054391306,0.0023266696,0.051911753,0.009268263],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027675318,0.000009651749,0.00019118768,0.000017430286,0.0000049805617,0.000398844,0.000088357374,0.000019518331,0.00006433403,0.00070370774,0.99666095,0.001813445],"study_design_scores_gemma":[0.00012757571,0.000054979835,0.0015034158,0.0002590653,0.000030093872,0.0017522526,0.00076958985,0.00032569273,0.00034855527,0.009433984,0.98529124,0.00010350952],"about_ca_topic_score_codex":0.00823074,"about_ca_topic_score_gemma":0.013255882,"teacher_disagreement_score":0.0675509,"about_ca_system_score_codex":0.003611609,"about_ca_system_score_gemma":0.005661339,"threshold_uncertainty_score":0.035933554},"labels":[],"label_agreement":null},{"id":"W4392586075","doi":"10.1128/jcm.01296-23","title":"Prospective observational pilot study of the T2Resistance panel in the T2Dx system for detection of resistance genes in bacterial bloodstream infections","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Sick Kids Foundation","keywords":"Interquartile range; Antibiotics; Sepsis; Microbiology; Ceftazidime; Antibiotic resistance; Antimicrobial; Prospective cohort study; Biology; Meropenem; Internal medicine; Medicine; Bacteria; Pseudomonas aeruginosa; Genetics","score_opus":0.10422675282306151,"score_gpt":0.3604791413066216,"score_spread":0.25625238848356013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392586075","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99928844,0.00003981252,0.00016104402,0.000019683272,0.000010450406,0.00012186315,0.00015509031,0.0000035632027,0.00020005282],"genre_scores_gemma":[0.9991561,0.000023476136,0.00024974765,0.00007692757,0.000024522291,0.00010765141,0.00022902379,0.000004446225,0.00012803944],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9971378,0.0013630743,0.0001614974,0.0006585054,0.0002940549,0.00038504702],"domain_scores_gemma":[0.9949545,0.0010687493,0.0011712068,0.00062497484,0.0006787973,0.0015016996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003498922,0.0009283132,0.0006264201,0.00056983455,0.00087985606,0.0011232685,0.0006412058,0.0010490733,0.0023235825],"category_scores_gemma":[0.0046421546,0.0009070288,0.000656078,0.0007055128,0.0009269349,0.0013259458,0.0009521808,0.0015430952,0.0009311722],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028562162,0.0017808434,0.99282736,0.0000141209,0.00006147789,0.00020014675,0.0003414512,0.000037652324,0.0007795243,0.00003098295,0.00016235173,0.0009077231],"study_design_scores_gemma":[0.00069964136,0.020074205,0.976179,0.000015399884,0.000090146794,0.0005478071,0.00090283545,0.000780854,0.00025777498,0.000043827953,0.0003744614,0.00003406596],"about_ca_topic_score_codex":0.0043138587,"about_ca_topic_score_gemma":0.0033633662,"teacher_disagreement_score":0.0043138587,"about_ca_system_score_codex":0.0005514052,"about_ca_system_score_gemma":0.0008711702,"threshold_uncertainty_score":0.018504322},"labels":[],"label_agreement":null},{"id":"W4393377214","doi":"10.1128/jcm.01445-23","title":"Automated detection of methicillin-resistant <i>Staphylococcus aureus</i> with the MRSA CHROM imaging application on BD Kiestra Total Lab Automation System","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association","funders":"BD","keywords":"Chromogenic; Staphylococcus aureus; Methicillin-resistant Staphylococcus aureus; Microbiology; Micrococcaceae; Medicine; Laboratory automation; Tertiary care; Surgery; Antibacterial agent; Automation; Biology; Bacteria; Chromatography; Chemistry; Antibiotics","score_opus":0.014973921570832131,"score_gpt":0.30907479152726114,"score_spread":0.29410086995642903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393377214","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8806236,0.005953989,0.095671855,0.0004021088,0.00020618187,0.0006678904,0.0015985199,0.005740182,0.0091357175],"genre_scores_gemma":[0.82024294,0.0016217165,0.1733518,0.00047137428,0.0001170182,0.0002515399,0.0013162226,0.00015082545,0.0024765916],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99709105,0.0007931437,0.0002621626,0.000402807,0.0013163113,0.00013446285],"domain_scores_gemma":[0.9966509,0.0012428496,0.0006809634,0.0002657687,0.0010472992,0.000112230344],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017505083,0.0005466585,0.0005676478,0.002176344,0.00032332703,0.00096020236,0.0006305787,0.00041348874,0.0026328706],"category_scores_gemma":[0.0032284632,0.0004921237,0.00046832272,0.00083472545,0.00031502848,0.0004949145,0.00061637064,0.00033374043,0.0014118563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014858645,0.00035303517,0.2444577,0.00071287324,0.00019189292,0.00063324545,0.00042606855,0.00056209497,0.545865,0.00031162507,0.005947764,0.19905286],"study_design_scores_gemma":[0.00010222127,0.003170641,0.46625602,0.0002471577,0.0004844765,0.010657386,0.00037160364,0.027040247,0.4745732,0.00021329137,0.01669996,0.00018369294],"about_ca_topic_score_codex":0.0026415095,"about_ca_topic_score_gemma":0.006199623,"teacher_disagreement_score":0.0026415095,"about_ca_system_score_codex":0.00041783784,"about_ca_system_score_gemma":0.0004847167,"threshold_uncertainty_score":0.009257734},"labels":[],"label_agreement":null},{"id":"W4402581954","doi":"10.1128/jcm.00819-24","title":"A lipidomics-based method to eliminate negative urine culture in general population","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Genome British Columbia; Island Health; University of Victoria","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Türkiye Bilimsel ve Teknolojik Araştırma Kurumu","keywords":"Lipidomics; Urine; Population; Chromatography; Medicine; Microbiology; Biology; Chemistry; Bioinformatics; Internal medicine; Environmental health","score_opus":0.043895562122635026,"score_gpt":0.45138690898883,"score_spread":0.407491346866195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402581954","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.920499,0.003609531,0.05529302,0.0022803866,0.00042781298,0.001181851,0.007699319,0.00085789576,0.008151086],"genre_scores_gemma":[0.9531687,0.0010559995,0.040531244,0.00086618756,0.0001360818,0.00032222035,0.0020155814,0.000050092258,0.0018539706],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988129,0.00036415007,0.00012844887,0.0002821175,0.00030286686,0.000109484696],"domain_scores_gemma":[0.99869496,0.00018133417,0.0003017198,0.00007821924,0.0006362333,0.000107619475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014216872,0.0007841718,0.00045044505,0.0021140429,0.00047854264,0.0010330899,0.0006418818,0.0006619488,0.0021282174],"category_scores_gemma":[0.003939366,0.00022465101,0.00033723176,0.0011948171,0.00021184556,0.00036458796,0.0008995222,0.0004962256,0.0009780509],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000949995,0.0006538511,0.77745116,0.0005267781,0.00027483655,0.00077105104,0.0006004998,0.00079523714,0.047400914,0.00046672308,0.00578605,0.16432287],"study_design_scores_gemma":[0.00009222544,0.002016462,0.92021286,0.00035841696,0.0003714214,0.002436292,0.001913256,0.01509731,0.040721815,0.00154808,0.015093934,0.00013802084],"about_ca_topic_score_codex":0.004964421,"about_ca_topic_score_gemma":0.0068305735,"teacher_disagreement_score":0.004964421,"about_ca_system_score_codex":0.00042172585,"about_ca_system_score_gemma":0.0009018733,"threshold_uncertainty_score":0.009871006},"labels":[],"label_agreement":null},{"id":"W4403705338","doi":"10.1128/jcm.00869-24","title":"A novel machine-learning aided platform for rapid detection of urine ESBLs and carbapenemases: URECA-LAMP","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Canadian Institutes of Health Research; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Acinetobacter baumannii; Klebsiella pneumoniae; Pseudomonas aeruginosa; Loop-mediated isothermal amplification; Microbiology; Carbapenem; Cephalosporin; Escherichia coli; Acinetobacter; Biology; Beta-lactamase; Bacteria; Antibiotics; Gene","score_opus":0.027920531702550634,"score_gpt":0.33064567494001773,"score_spread":0.3027251432374671,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403705338","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4133644,0.004027328,0.5420188,0.0009694043,0.00053943536,0.0009738614,0.0025025825,0.029870758,0.005733507],"genre_scores_gemma":[0.69260997,0.0008170416,0.29632875,0.00095705077,0.00012591206,0.0006010671,0.0015918098,0.00019901416,0.0067693796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99926347,0.00011321667,0.000034743112,0.00023495514,0.00028977194,0.00006376308],"domain_scores_gemma":[0.9995826,0.00011214132,0.000069721435,0.000043676104,0.0001561307,0.000035769648],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057986536,0.0007769454,0.000619422,0.0008548207,0.0002708381,0.00057538226,0.000963276,0.0011344953,0.0024632765],"category_scores_gemma":[0.00072747027,0.0003160106,0.00052209065,0.000289307,0.00023010181,0.00061386754,0.00081024406,0.0006297265,0.0012248083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005068659,0.0004293467,0.004722769,0.00050342624,0.00010832554,0.00039965735,0.00006862743,0.0041048643,0.8583251,0.0005078806,0.0043791668,0.1259439],"study_design_scores_gemma":[0.0001005535,0.0010177428,0.008470851,0.000075911616,0.00013242262,0.0014579813,0.00003681542,0.23861259,0.732568,0.00030586356,0.016997287,0.00022402451],"about_ca_topic_score_codex":0.00085565116,"about_ca_topic_score_gemma":0.0008514561,"teacher_disagreement_score":0.0024632765,"about_ca_system_score_codex":0.0003429168,"about_ca_system_score_gemma":0.00044826133,"threshold_uncertainty_score":0.008240521},"labels":[],"label_agreement":null},{"id":"W4404021220","doi":"10.1128/jcm.00950-24","title":"Serum antigen tests for the diagnosis of invasive aspergillosis: a retrospective comparison of five <i>Aspergillus</i> antigen assays and one beta-D-glucan assay","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Aspergillosis; Immunoassay; Antigen; Medicine; Immunology; Aspergillus; Hematopoietic stem cell transplantation; Transplantation; Internal medicine; Biology; Microbiology; Antibody","score_opus":0.08650446087947392,"score_gpt":0.4120616058397315,"score_spread":0.32555714496025756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404021220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878937,0.0005341103,0.00027555448,0.00001294253,0.000011379687,0.000016567772,0.000057752033,0.000005698062,0.0002965889],"genre_scores_gemma":[0.99977034,0.000056412617,0.00007752608,0.000011419884,0.0000056665417,0.0000046663204,0.000051708066,0.0000019042216,0.000020343123],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9956743,0.0013418265,0.0006128133,0.001141256,0.00090269063,0.0003271665],"domain_scores_gemma":[0.9915611,0.0032875123,0.0025759698,0.0005903174,0.0011632141,0.00082186155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003230259,0.0006658089,0.00057199807,0.001358647,0.0004764087,0.0009224126,0.00048010107,0.00074934034,0.0007509016],"category_scores_gemma":[0.00784984,0.00072119565,0.0006657959,0.0011721903,0.0006920802,0.0007387178,0.00052606326,0.00076632306,0.00035693063],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020967571,0.0000489404,0.99849665,0.000008198941,0.000054347194,0.0001797652,0.00004510304,0.00003741984,0.00021468631,0.000008058744,0.000025075746,0.0006720529],"study_design_scores_gemma":[0.00002605921,0.0009649866,0.9957104,0.000015556761,0.00011558991,0.001850805,0.00020743378,0.0006091346,0.00029381912,0.00001857628,0.00017750588,0.000010137092],"about_ca_topic_score_codex":0.0022478653,"about_ca_topic_score_gemma":0.001253206,"teacher_disagreement_score":0.003230259,"about_ca_system_score_codex":0.0004254003,"about_ca_system_score_gemma":0.00035336817,"threshold_uncertainty_score":0.017083466},"labels":[],"label_agreement":null},{"id":"W4404243876","doi":"10.1128/jcm.00937-24","title":"Nomenclature for human and animal fungal pathogens and diseases: a proposal for standardized terminology","year":2024,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Public Health; Institut National de Santé Publique du Québec","funders":"National Institute of Allergy and Infectious Diseases; Centers for Disease Control and Prevention","keywords":"Nomenclature; Terminology; Biology; Computational biology; Taxonomy (biology); Zoology; Linguistics; Philosophy","score_opus":0.09355273731937166,"score_gpt":0.4798946280619295,"score_spread":0.38634189074255787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404243876","genre_codex":"methods","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013089582,0.19311439,0.290925,0.10294474,0.1818989,0.00556838,0.019104294,0.004157802,0.18919699],"genre_scores_gemma":[0.067640446,0.15895993,0.5664376,0.06803577,0.06307561,0.009054918,0.03616231,0.002002604,0.028630773],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9823531,0.006522794,0.005903225,0.0012165832,0.0030806852,0.0009236218],"domain_scores_gemma":[0.96659833,0.0135303,0.005676082,0.0024274113,0.009531765,0.0022361018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.016652018,0.0023836542,0.0030522486,0.018103268,0.0030486681,0.009366804,0.005695888,0.004911114,0.009327295],"category_scores_gemma":[0.027145578,0.000829477,0.0028285393,0.017674837,0.008683186,0.010545607,0.005289936,0.010601859,0.010686823],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002685478,0.00017596928,0.0027214126,0.0039730775,0.00008115719,0.0016057452,0.0060031367,0.00085873436,0.0035713275,0.35625666,0.4459977,0.17848647],"study_design_scores_gemma":[0.000016587612,0.00006266299,0.0010553263,0.0015918808,0.000018403902,0.0013735407,0.000918535,0.0003416759,0.00013443187,0.023573175,0.9708722,0.00004160786],"about_ca_topic_score_codex":0.0033126683,"about_ca_topic_score_gemma":0.002540607,"teacher_disagreement_score":0.018103268,"about_ca_system_score_codex":0.003276184,"about_ca_system_score_gemma":0.009240209,"threshold_uncertainty_score":0.088065326},"labels":[],"label_agreement":null},{"id":"W4404695602","doi":"10.1128/jcm.01535-24","title":"Emergence of terbinafine-resistant <i>Trichophyton indotineae</i> in Ontario, Canada, 2014–2023","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Terbinafine; Trichophyton; Microbiology; Medicine; Biology; Antifungal; Itraconazole","score_opus":0.026228352595127718,"score_gpt":0.3388218205376363,"score_spread":0.3125934679425086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404695602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98756814,0.00083182263,0.0003963224,0.0007119979,0.00003420301,0.00017611228,0.0035709129,0.000050627797,0.0066597075],"genre_scores_gemma":[0.99480647,0.00062404515,0.00041608032,0.00042074992,0.000012553141,0.000018617457,0.0015371917,0.000014648198,0.0021495274],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9993843,0.000020021755,0.000025527603,0.00008065951,0.00025637576,0.00023315889],"domain_scores_gemma":[0.9983016,0.000046366036,0.0002548348,0.000036684363,0.00089870096,0.0004617501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002668145,0.00043337757,0.0003123888,0.0010521375,0.003676229,0.0013730178,0.0009213682,0.0005270484,0.0018123784],"category_scores_gemma":[0.0007656617,0.00037412823,0.00043779347,0.002028862,0.0008136732,0.0002561197,0.0006946116,0.0007627535,0.00028436474],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024788993,0.00009072439,0.95814574,0.00020475379,0.00007299009,0.006081345,0.0030465429,0.00033494126,0.011730519,0.00026453682,0.0052480022,0.014531991],"study_design_scores_gemma":[0.000011532375,0.00006925406,0.9871586,0.00006464688,0.000026555683,0.0019033602,0.0032104538,0.0005320937,0.0007974736,0.00003575257,0.0061682723,0.000022108808],"about_ca_topic_score_codex":0.99231005,"about_ca_topic_score_gemma":0.99602246,"teacher_disagreement_score":0.024664482,"about_ca_system_score_codex":0.024664482,"about_ca_system_score_gemma":0.036773324,"threshold_uncertainty_score":0.17895418},"labels":[],"label_agreement":null},{"id":"W4405242052","doi":"10.1128/jcm.01433-24","title":"Targeted syndromic next-generation sequencing panel for simultaneous detection of pathogens associated with bovine reproductive failure","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Saskatchewan","funders":"Beef Cattle Research Council; Ministry of Agriculture - Saskatchewan","keywords":"Biology; DNA sequencing; Virology; Computational biology; Genetics; Microbiology; Medicine; Gene","score_opus":0.10646668677135583,"score_gpt":0.3455226901416989,"score_spread":0.23905600337034305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405242052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9020282,0.0036962752,0.08786011,0.00044132723,0.00009536268,0.00018678392,0.003124235,0.0006561727,0.001911479],"genre_scores_gemma":[0.90997833,0.00078740966,0.084751494,0.00057662977,0.00004143507,0.0000890497,0.0031125806,0.000034206354,0.00062887196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858296,0.00046648385,0.00011337871,0.0003704528,0.00037233107,0.00009443704],"domain_scores_gemma":[0.9991115,0.00030537983,0.00016863854,0.00006878451,0.0002844423,0.00006123156],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013648019,0.00050952815,0.00056071853,0.0009279931,0.0002096273,0.0005497107,0.0004259877,0.0007036066,0.0004632286],"category_scores_gemma":[0.0014201596,0.00023951987,0.0004764834,0.00043859752,0.00020277011,0.00027350307,0.00046950855,0.00049122365,0.00024206152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046031966,0.00017764243,0.16978377,0.00041256804,0.00021979469,0.00084800774,0.0003853059,0.0041257087,0.76129526,0.00040584654,0.00125892,0.060626816],"study_design_scores_gemma":[0.000082697756,0.0019325818,0.3225605,0.00022224052,0.0005928401,0.008252322,0.00057700963,0.13270752,0.51664007,0.0010832999,0.015156602,0.00019226932],"about_ca_topic_score_codex":0.0015020752,"about_ca_topic_score_gemma":0.0034166183,"teacher_disagreement_score":0.0015020752,"about_ca_system_score_codex":0.0003058486,"about_ca_system_score_gemma":0.0004060922,"threshold_uncertainty_score":0.0072178245},"labels":[],"label_agreement":null},{"id":"W4405640570","doi":"10.1128/jcm.01207-24","title":"Use of voriconazole to predict susceptibility and resistance to isavuconazole for <i>Aspergillus fumigatus</i> using CLSI methods and interpretive criteria","year":2024,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Genentech; U.S. Food and Drug Administration; National Institutes of Health; Astellas Pharma; Basilea Pharmaceutica; Ohio State University; Nabriva Therapeutics; Pfizer; Melinta Therapeutics; Entasis Therapeutics; Wockhardt; Mundipharma International; Zoetis; Menarini Group; McGill University; Roche; Cidara Therapeutics; Medpace; Carnegie Mellon University; TenNor Therapeutics; Harvard University; Meiji Seika Pharma; Shionogi; National Cancer Institute; Gilead Sciences; GlaxoSmithKline; Dr. Falk Pharma","keywords":"Voriconazole; Aspergillus fumigatus; Posaconazole; Broth microdilution; Aspergillus; Medicine; Biology; Microbiology; Antifungal; Minimum inhibitory concentration; Antibiotics","score_opus":0.10283870861476022,"score_gpt":0.4818609321093736,"score_spread":0.37902222349461334,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405640570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98038596,0.0010317971,0.012418006,0.00028986382,0.00013031575,0.00018575165,0.0012834764,0.00026774855,0.004007089],"genre_scores_gemma":[0.99148035,0.000102316284,0.007541845,0.00007093646,0.000014410447,0.000026713387,0.0006478057,0.000013094073,0.00010247458],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9887417,0.0044437903,0.0023910052,0.0010642499,0.0030309507,0.00032830783],"domain_scores_gemma":[0.98252594,0.007350463,0.0042020944,0.00083499076,0.0046260087,0.000460402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0067168884,0.000815101,0.0004742495,0.0031942967,0.0003355161,0.0012182954,0.0008703629,0.00058761804,0.00056504563],"category_scores_gemma":[0.017715923,0.00023718437,0.0007316432,0.001231905,0.0005619349,0.00048177183,0.00049052975,0.00054136623,0.00046985733],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031833045,0.00013054219,0.9760893,0.000077094395,0.00012992986,0.00028542877,0.0001993859,0.0010347128,0.009397661,0.00007447993,0.00076209125,0.011500987],"study_design_scores_gemma":[0.000034407545,0.0009804412,0.89534545,0.0001947789,0.00022025712,0.0025288959,0.00085089233,0.050370455,0.046646796,0.0002296405,0.0025174816,0.000080416525],"about_ca_topic_score_codex":0.0053827367,"about_ca_topic_score_gemma":0.005649342,"teacher_disagreement_score":0.0067168884,"about_ca_system_score_codex":0.0005719908,"about_ca_system_score_gemma":0.0005050898,"threshold_uncertainty_score":0.03552276},"labels":[],"label_agreement":null},{"id":"W4406086706","doi":"10.1128/jcm.01515-24","title":"Rapidly spreading <i>Enterobacterales</i> with OXA-48-like carbapenemases","year":2025,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Klebsiella pneumoniae; Indian subcontinent; Outbreak; Plasmid; Escherichia coli; Biology; Microbiology; Virology; Gene; Genetics; Ethnology","score_opus":0.032995262967071275,"score_gpt":0.37310298839302325,"score_spread":0.34010772542595197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406086706","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9652479,0.00894814,0.0024741879,0.0012472433,0.00017317239,0.0000869132,0.0012620266,0.00023411417,0.020326266],"genre_scores_gemma":[0.9879012,0.003993733,0.0013925527,0.00081937097,0.00016507885,0.000013992507,0.0015416984,0.00003309527,0.0041391705],"study_design_codex":"observational","study_design_gemma":"not_applicable","domain_scores_codex":[0.99963796,0.000043650783,0.000038566897,0.00009864363,0.00006858161,0.00011250242],"domain_scores_gemma":[0.9991862,0.00004582069,0.00030307512,0.000050680534,0.0002596622,0.00015454856],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020273743,0.00040472698,0.0002066519,0.0005289904,0.00030911717,0.0010856164,0.00019047034,0.00044495007,0.004964452],"category_scores_gemma":[0.00057924417,0.00013442553,0.00024594401,0.0005821208,0.00021425537,0.00046340702,0.00044035978,0.00040479066,0.0022168844],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007398953,0.00028158346,0.52810735,0.0008079655,0.00009645981,0.013615465,0.0005260315,0.00040445555,0.32475632,0.0010659269,0.015026054,0.11457241],"study_design_scores_gemma":[0.00006794994,0.00085322215,0.7932239,0.0004936974,0.00012481066,0.057196207,0.0027606513,0.00060245773,0.05032002,0.0011519411,0.09313212,0.00007299015],"about_ca_topic_score_codex":0.0027306448,"about_ca_topic_score_gemma":0.0022191869,"teacher_disagreement_score":0.004964452,"about_ca_system_score_codex":0.00038009646,"about_ca_system_score_gemma":0.0003626568,"threshold_uncertainty_score":0.016607702},"labels":[],"label_agreement":null},{"id":"W4406688221","doi":"10.1128/jcm.01129-24","title":"Anidulafungin is a useful surrogate marker for predicting <i>in vitro</i> susceptibility to rezafungin among five <i>Candida</i> species using CLSI methods and interpretive criteria","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Genentech; U.S. Food and Drug Administration; National Institutes of Health; Astellas Pharma; Basilea Pharmaceutica; Ohio State University; Nabriva Therapeutics; Pfizer; Melinta Therapeutics; Entasis Therapeutics; Wockhardt; Mundipharma International; Zoetis; Menarini Group; McGill University; Roche; Cidara Therapeutics; Medpace; Carnegie Mellon University; TenNor Therapeutics; Harvard University; Meiji Seika Pharma; Shionogi; National Cancer Institute; Gilead Sciences; GlaxoSmithKline; Dr. Falk Pharma","keywords":"Anidulafungin; Micafungin; Caspofungin; Candida dubliniensis; Candida parapsilosis; Candida krusei; Candida glabrata; Candida tropicalis; Broth microdilution; Biology; Candida albicans; Microbiology; Echinocandin; Echinocandins; Fluconazole; Corpus albicans; Antifungal; Minimum inhibitory concentration; Antimicrobial","score_opus":0.043537444570821635,"score_gpt":0.4453509296125755,"score_spread":0.40181348504175385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406688221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912601,0.0006196179,0.006507907,0.000078085046,0.00001878484,0.000033678738,0.0003266374,0.0000653746,0.00108969],"genre_scores_gemma":[0.9957526,0.000092734874,0.0037284493,0.000024552339,0.000005312728,0.000008964797,0.000308826,0.0000045612323,0.00007392052],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766064,0.0007673586,0.0003671842,0.00032736245,0.0007666253,0.000110866116],"domain_scores_gemma":[0.9964546,0.001504531,0.0010623506,0.00020212804,0.00061073713,0.00016583207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017191496,0.0005198816,0.0003553009,0.0012366687,0.00021590435,0.0007805828,0.00027275126,0.00055228255,0.00048000296],"category_scores_gemma":[0.0071031647,0.00017104395,0.0003355604,0.00041280972,0.00021912865,0.0002788736,0.00030484513,0.00042324496,0.000257806],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014259124,0.00022792154,0.77996993,0.00011954079,0.00012099456,0.0003571604,0.00022700158,0.001639155,0.18619584,0.00012134076,0.0003096601,0.029285578],"study_design_scores_gemma":[0.00004303566,0.0026822311,0.76552737,0.00008156863,0.00015240087,0.0027760286,0.00029582658,0.01581311,0.21085465,0.00019261033,0.0015267095,0.000054403572],"about_ca_topic_score_codex":0.0012356938,"about_ca_topic_score_gemma":0.0011624121,"teacher_disagreement_score":0.0017191496,"about_ca_system_score_codex":0.00023884828,"about_ca_system_score_gemma":0.00020521655,"threshold_uncertainty_score":0.009091854},"labels":[],"label_agreement":null},{"id":"W4406688271","doi":"10.1128/jcm.01480-24","title":"Evaluation of antimicrobial susceptibility testing methods for <i>Burkholderia cepacia</i> complex isolates from people with and without cystic fibrosis","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Cystic Fibrosis Foundation","keywords":"Etest; Burkholderia cepacia complex; Microbiology; Ceftazidime; Trimethoprim; Broth microdilution; Burkholderia; Meropenem; Levofloxacin; Cystic fibrosis; Agar; Medicine; Antimicrobial; Pseudomonas aeruginosa; Biology; Internal medicine; Bacteria; Minimum inhibitory concentration; Antibiotics; Antibiotic resistance","score_opus":0.11808171607056792,"score_gpt":0.4900653708328408,"score_spread":0.3719836547622729,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406688271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99318486,0.0005268206,0.0043701897,0.00012517777,0.000048570328,0.00015610688,0.000790422,0.000051406765,0.000746521],"genre_scores_gemma":[0.98589003,0.00029667022,0.012266941,0.00018479512,0.000027431062,0.00011204918,0.00097550615,0.000022673887,0.00022389743],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9917127,0.0023113324,0.001280946,0.0016201216,0.0027511078,0.00032377412],"domain_scores_gemma":[0.9928316,0.0018722977,0.0016913575,0.00052649615,0.0027823874,0.00029580606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0041251336,0.00080799236,0.00055040227,0.0013795786,0.000534713,0.001004815,0.00056706835,0.0008106588,0.00053978694],"category_scores_gemma":[0.009608608,0.00029739682,0.00070245855,0.0009906499,0.00055753585,0.0005352742,0.00082239386,0.0004181867,0.00038551705],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011535828,0.00077424326,0.79877216,0.0004612048,0.00032458353,0.0005570744,0.002569639,0.00046554758,0.16391103,0.00012543052,0.00066554715,0.030219972],"study_design_scores_gemma":[0.00007640867,0.004473922,0.6657376,0.0002958389,0.00070964335,0.004481843,0.003136491,0.0049901134,0.31157678,0.00018581277,0.004215831,0.00011972206],"about_ca_topic_score_codex":0.003548811,"about_ca_topic_score_gemma":0.0032824979,"teacher_disagreement_score":0.0041251336,"about_ca_system_score_codex":0.000318207,"about_ca_system_score_gemma":0.00045431222,"threshold_uncertainty_score":0.021816075},"labels":[],"label_agreement":null},{"id":"W4407137809","doi":"10.1128/jcm.01456-24","title":"Development and evaluation of a next-generation sequencing methodology for measles virus using Oxford Nanopore Technology","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Reference genome; Amplicon; Measles virus; Genome; Whole genome sequencing; Biology; Nanopore sequencing; Genetics; Computational biology; Measles; Virology; Gene; Polymerase chain reaction","score_opus":0.5726134469004739,"score_gpt":0.5170409470205909,"score_spread":0.055572499879883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407137809","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34686494,0.0017150968,0.6439203,0.00022589996,0.00010634841,0.0017006084,0.0016409633,0.0017607728,0.0020651056],"genre_scores_gemma":[0.12551036,0.00051619456,0.87006146,0.00010071542,0.000017296692,0.00068808947,0.0016682117,0.00011731761,0.0013203652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979918,0.00044787748,0.00020277701,0.0003881257,0.00083846826,0.00013093305],"domain_scores_gemma":[0.99868983,0.00044925755,0.00014197477,0.0001655512,0.00041138844,0.00014189207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002868627,0.00068598246,0.00057515525,0.0006915053,0.00044558506,0.0007088258,0.0008386948,0.00084282586,0.0010696662],"category_scores_gemma":[0.0022895094,0.00046464932,0.00045937533,0.0003042354,0.00041478677,0.0007299237,0.0009224539,0.0006857328,0.0006537654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009995675,0.00004756613,0.0022905404,0.00018724705,0.000036335132,0.00005971896,0.00011965447,0.0017016779,0.9765562,0.00035727167,0.00012869302,0.018415166],"study_design_scores_gemma":[0.000030714273,0.0010734193,0.010162576,0.000042461317,0.000059547878,0.000493388,0.0000876576,0.025623247,0.95343477,0.00026765297,0.008640863,0.00008372136],"about_ca_topic_score_codex":0.0016167714,"about_ca_topic_score_gemma":0.0022607655,"teacher_disagreement_score":0.002868627,"about_ca_system_score_codex":0.00056758506,"about_ca_system_score_gemma":0.00079109264,"threshold_uncertainty_score":0.015170932},"labels":[],"label_agreement":null},{"id":"W4409000646","doi":"10.1128/jcm.01807-24","title":"Determination of the performance of a novel diagnostic test for <i>Clostridioides difficile</i> toxins A and B using latent class analysis","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Jewish General Hospital; McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Toxin; Clostridium difficile toxin B; Clostridium difficile toxin A; Microbiology; Medicine; Nucleic Acid Amplification Tests; Virology; Clostridium difficile; Biology; Antibiotics","score_opus":0.05512045483067854,"score_gpt":0.3812609581039663,"score_spread":0.3261405032732878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409000646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908895,0.0010301039,0.007254539,0.000040385155,0.000013577805,0.000012024875,0.00016912757,0.000035214147,0.0005555767],"genre_scores_gemma":[0.9974542,0.00008542,0.0022755172,0.000015907068,0.000007456268,0.0000058100104,0.00009036004,0.00000421002,0.00006107213],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99865854,0.00045156255,0.00012174662,0.00034409238,0.00030213638,0.00012187522],"domain_scores_gemma":[0.9972697,0.0013387663,0.00077088043,0.00017348805,0.0003165057,0.00013071058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002744244,0.00053090206,0.0004925949,0.0007194836,0.0002025338,0.00082787755,0.00028328208,0.00050490856,0.00044668076],"category_scores_gemma":[0.0043725856,0.00021391244,0.0004927983,0.00041781852,0.00043455488,0.0004117484,0.0003029064,0.00036311775,0.0002767636],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033572802,0.000054054468,0.9762263,0.000049082904,0.000121209756,0.00010170293,0.00005661246,0.0009296679,0.012006269,0.00007685386,0.00010265565,0.009939978],"study_design_scores_gemma":[0.000043507185,0.0014509748,0.91538346,0.000054872708,0.0003665981,0.0021240585,0.00021701584,0.04463,0.034466773,0.00024258815,0.000990763,0.000029384159],"about_ca_topic_score_codex":0.0011023502,"about_ca_topic_score_gemma":0.0008723904,"teacher_disagreement_score":0.002744244,"about_ca_system_score_codex":0.00048458754,"about_ca_system_score_gemma":0.0003056256,"threshold_uncertainty_score":0.014513135},"labels":[],"label_agreement":null},{"id":"W4409086713","doi":"10.1128/jcm.01987-24","title":"Impact of packed red blood cells versus fresh whole human blood on the growth of nutritionally variant streptococci and <i>Streptococcus anginosus</i> group during verification of the BACT/ALERT VIRTUO blood culture system","year":2025,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver Coastal Health","funders":"","keywords":"Streptococcus anginosus; Microbiology; Streptococcus; Streptococcaceae; Biology; Human blood; Blood culture; Bacteria; Antibiotics; Physiology; Genetics","score_opus":0.025000490087136118,"score_gpt":0.31569379955071947,"score_spread":0.29069330946358335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409086713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7236517,0.0070376745,0.00045738977,0.22231817,0.011527952,0.00012049633,0.0004739694,0.00015104418,0.034261707],"genre_scores_gemma":[0.889684,0.0013216027,0.0008471476,0.09510997,0.0066016586,0.000032447322,0.0001188507,0.000052007363,0.0062322803],"study_design_codex":"case_report","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986179,0.0004920392,0.00017777176,0.00013959987,0.00043984753,0.00013286405],"domain_scores_gemma":[0.9930161,0.0052430793,0.0003322162,0.00014055039,0.0006443196,0.0006237915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012461073,0.00032113332,0.00063661125,0.0003136691,0.0008675762,0.0013292339,0.00087381055,0.005132969,0.0023102907],"category_scores_gemma":[0.009846559,0.00027859642,0.00049708225,0.00030902083,0.00044461363,0.0005126736,0.00024287227,0.0025201389,0.000612399],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0501486,0.0039131157,0.18361814,0.0008527953,0.0003888626,0.3134369,0.0044619283,0.0015420502,0.052390877,0.0029682692,0.22137213,0.16490634],"study_design_scores_gemma":[0.002420186,0.05108624,0.39645034,0.001416756,0.0015014141,0.21797957,0.010590672,0.010688191,0.07385277,0.0034185504,0.23018335,0.00041192962],"about_ca_topic_score_codex":0.006319537,"about_ca_topic_score_gemma":0.00897546,"teacher_disagreement_score":0.006319537,"about_ca_system_score_codex":0.0023124204,"about_ca_system_score_gemma":0.0009510027,"threshold_uncertainty_score":0.016777873},"labels":[],"label_agreement":null},{"id":"W4409161342","doi":"10.1128/jcm.01903-24","title":"Establishment of epidemiological cutoff values for <i>Fonsecaea pedrosoi</i> , the primary etiologic agent of chromoblastomycosis, and eight antifungal medications","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"NHLBI Division of Intramural Research; Division of Graduate Education; NIH Clinical Center; National Institutes of Health; Centers for Disease Control and Prevention; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Posaconazole; Itraconazole; Voriconazole; Chromoblastomycosis; Terbinafine; Biology; Microbiology; Amphotericin B; Medicine; Antifungal","score_opus":0.0510858699393079,"score_gpt":0.3990718095831329,"score_spread":0.34798593964382496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409161342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922426,0.00054764206,0.0026305476,0.000058522764,0.000019662528,0.00011300036,0.0010959633,0.000053054715,0.0032390743],"genre_scores_gemma":[0.98848766,0.00023795878,0.009112459,0.000030876774,0.000011263367,0.000079057056,0.0016860109,0.000008579576,0.0003460697],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985266,0.00026355777,0.00029584116,0.00036015973,0.00035709224,0.00019677804],"domain_scores_gemma":[0.9976749,0.0003831655,0.0010005183,0.00013067955,0.00066371966,0.00014694533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015403581,0.0006441437,0.00047732345,0.0021053988,0.0004984071,0.0011390878,0.00039791898,0.0004697449,0.0010778557],"category_scores_gemma":[0.003038816,0.00022158599,0.0003512033,0.0012344216,0.0003637423,0.00055146986,0.0006083095,0.00041125625,0.00039379363],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035941016,0.00016610489,0.9308458,0.00012572463,0.000036303605,0.0004344664,0.00031199813,0.00044979606,0.043171983,0.00017239855,0.00045740898,0.023468595],"study_design_scores_gemma":[0.000010985026,0.00040306846,0.9765196,0.000048266862,0.000055125958,0.0013427456,0.00062385673,0.0016078049,0.016592015,0.000084517,0.0026951793,0.000016889928],"about_ca_topic_score_codex":0.008567928,"about_ca_topic_score_gemma":0.0058295634,"teacher_disagreement_score":0.008567928,"about_ca_system_score_codex":0.0006956374,"about_ca_system_score_gemma":0.00051153894,"threshold_uncertainty_score":0.01703614},"labels":[],"label_agreement":null},{"id":"W4410235393","doi":"10.1128/jcm.00128-25","title":"Detection of ESBL-producing <i>Klebsiella oxytoca</i> complex with VITEK 2 system and screening cutoffs for implementing confirmatory tests","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Ceftazidime; Aztreonam; Cefotaxime; Klebsiella oxytoca; Cefpodoxime; Microbiology; Ceftriaxone; Clinical microbiology; Beta-lactamase; Carbapenem; Medicine; Klebsiella pneumoniae; Biology; Imipenem; Antibiotics; Antibiotic resistance; Bacteria; Escherichia coli","score_opus":0.030320989278928717,"score_gpt":0.34113446682626314,"score_spread":0.3108134775473344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410235393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9771797,0.00096689723,0.019363247,0.00013569769,0.000061108476,0.00023352445,0.0004953269,0.00033774786,0.0012267061],"genre_scores_gemma":[0.96456313,0.00031885097,0.033289086,0.00012493733,0.00002341792,0.0001531541,0.0009955503,0.000033776585,0.0004981425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99657404,0.0010322491,0.0006237926,0.0006497799,0.0008545412,0.00026554096],"domain_scores_gemma":[0.9982034,0.00069700077,0.00043051722,0.00014926925,0.0004066998,0.00011307532],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001880625,0.0009857612,0.00068514684,0.0014024196,0.00020647128,0.00072067697,0.00070070743,0.00074987864,0.00093260314],"category_scores_gemma":[0.004368071,0.00033893873,0.00049321674,0.0007916534,0.00042907736,0.00053660845,0.00060020824,0.00047656856,0.00040580178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011277889,0.00032762188,0.13166688,0.0003241974,0.00008020646,0.00019364692,0.00017164137,0.0006617065,0.8484809,0.00012770214,0.0002714874,0.016566256],"study_design_scores_gemma":[0.000050186,0.0017932125,0.11957764,0.00006264749,0.00021753475,0.0018823198,0.0002093492,0.009051021,0.8649454,0.00009803423,0.0020608683,0.00005180437],"about_ca_topic_score_codex":0.0008100449,"about_ca_topic_score_gemma":0.00050313864,"teacher_disagreement_score":0.001880625,"about_ca_system_score_codex":0.00027254515,"about_ca_system_score_gemma":0.0003224605,"threshold_uncertainty_score":0.009945869},"labels":[],"label_agreement":null},{"id":"W4410304563","doi":"10.1128/jcm.00121-25","title":"The dark matter of bacterial genomic surveillance—antimicrobial resistance plasmid transmissions in the hospital setting","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Plasmid; Multilocus sequence typing; Biology; Transmission (telecommunications); Typing; Antibiotic resistance; Genome; Whole genome sequencing; Multiple drug resistance; Molecular epidemiology; Genetics; Microbiology; Drug resistance; Gene; Bacteria; Genotype; Computer science","score_opus":0.008366126098357527,"score_gpt":0.2973933128177259,"score_spread":0.2890271867193684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410304563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847333,0.003404325,0.0057535907,0.0026722078,0.00005313721,0.000014765988,0.00026389695,0.00007575902,0.003028951],"genre_scores_gemma":[0.9956054,0.0008033958,0.0026383568,0.00056327414,0.00007607276,0.000007034463,0.00012215709,0.000014946893,0.00016935298],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978777,0.0010005605,0.00014355956,0.00035857497,0.00044858712,0.0001710424],"domain_scores_gemma":[0.9937785,0.001982019,0.0026681658,0.00044556832,0.0006675601,0.00045810817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018222124,0.00019497907,0.00023770687,0.00085758074,0.00034835428,0.0016315256,0.00046757798,0.00059475395,0.0011473731],"category_scores_gemma":[0.0077870437,0.00017804452,0.00012414496,0.0010942442,0.0007779466,0.0010168522,0.00088109897,0.0004850541,0.0003202894],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025548795,0.000095431635,0.8708049,0.00022306124,0.000055155375,0.0007569963,0.0014287572,0.00058536715,0.016331164,0.00097214937,0.0016628272,0.10682883],"study_design_scores_gemma":[0.000012014162,0.00036343816,0.96683806,0.00023376168,0.000059686216,0.0038198521,0.004868456,0.0038413766,0.009903021,0.002177568,0.00784015,0.000042660413],"about_ca_topic_score_codex":0.0020713343,"about_ca_topic_score_gemma":0.0033336878,"teacher_disagreement_score":0.0020713343,"about_ca_system_score_codex":0.0006303897,"about_ca_system_score_gemma":0.00051968836,"threshold_uncertainty_score":0.009636939},"labels":[],"label_agreement":null},{"id":"W4411028335","doi":"10.1128/jcm.01276-24","title":"The <i>Staphylococcus aureus</i> complex: implications for the clinical microbiology laboratory","year":2025,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Electricity Association; Public Health Ontario; University of Toronto; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Staphylococcus aureus; Clinical microbiology; Microbiology; Biology; Staphylococcal infections; Bacteria; Genetics","score_opus":0.13807304496255385,"score_gpt":0.48658974529554244,"score_spread":0.3485167003329886,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411028335","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000034961868,0.997589,0.00007463084,0.0009926525,0.00072637096,0.0000020829818,0.000009755057,0.000007689718,0.0005628116],"genre_scores_gemma":[0.00031773467,0.99750525,0.0002053804,0.0007926616,0.0007489776,0.0000042285847,0.000017409964,0.000002509275,0.00040586904],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992248,0.000178906,0.00013467328,0.00009933878,0.00031248125,0.000049748676],"domain_scores_gemma":[0.9974088,0.0013525957,0.0002593657,0.00006223252,0.00075111823,0.00016600672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014531169,0.000716456,0.0013481446,0.002476809,0.00032666273,0.0016873257,0.0009255718,0.0016778654,0.0040171193],"category_scores_gemma":[0.0027862738,0.00030188583,0.0005882902,0.0018304548,0.00085924566,0.0022834048,0.0008726594,0.0028407748,0.0029333837],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003782744,0.000033370186,0.00020125601,0.017528838,0.000066555505,0.0001756731,0.000093385985,0.0001528452,0.00093995134,0.0039038989,0.08704383,0.88982254],"study_design_scores_gemma":[0.0000055797454,0.00004586096,0.0005958922,0.007867829,0.000055064596,0.0011104282,0.00008992294,0.00004205542,0.00014771467,0.0017144176,0.9883078,0.00001745172],"about_ca_topic_score_codex":0.0013428106,"about_ca_topic_score_gemma":0.0018929455,"teacher_disagreement_score":0.0040171193,"about_ca_system_score_codex":0.0009826145,"about_ca_system_score_gemma":0.0021615434,"threshold_uncertainty_score":0.013438582},"labels":[],"label_agreement":null},{"id":"W4411029946","doi":"10.1128/jcm.01904-24","title":"Improved HIV-1 RNA detection using whole blood versus plasma in antiretroviral-treated individuals","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Mental Health; National Heart, Lung, and Blood Institute","keywords":"Serology; Nat; Nucleic acid; Human immunodeficiency virus (HIV); Virology; Viral load; Whole blood; RNA; Immunology; Nucleic acid test; Medicine; Biology; Antibody; Internal medicine; Disease; Gene; Coronavirus disease 2019 (COVID-19)","score_opus":0.040472127973201676,"score_gpt":0.36097356212386683,"score_spread":0.3205014341506652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411029946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993835,0.0010542951,0.0035143576,0.000084772255,0.00003376577,0.000030661453,0.00028838526,0.000074745934,0.0010840459],"genre_scores_gemma":[0.9958444,0.00012516358,0.0033462895,0.000099609686,0.000019726152,0.000023636032,0.00017114947,0.000009207792,0.00036078974],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99855727,0.00078068394,0.00007646731,0.00026018862,0.00025457668,0.00007082114],"domain_scores_gemma":[0.99879265,0.0007577998,0.00017360391,0.000084889056,0.00012305818,0.000067952446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018083759,0.00045329717,0.0004159079,0.0004561472,0.00014613502,0.00085648807,0.00022083848,0.0005263569,0.0016015009],"category_scores_gemma":[0.0036154462,0.00032513472,0.00020013173,0.0002718569,0.00021911737,0.00048384306,0.0002976694,0.0004899293,0.00037394548],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01031794,0.0006302874,0.57532144,0.00038820357,0.0004871161,0.00037065617,0.0005836974,0.0012857389,0.31639776,0.0001810378,0.00095597724,0.09308015],"study_design_scores_gemma":[0.00021831511,0.009854202,0.7799782,0.000099430275,0.00051148236,0.002608907,0.00026102818,0.018668178,0.1849232,0.00042334807,0.0023976732,0.000056076566],"about_ca_topic_score_codex":0.00034224615,"about_ca_topic_score_gemma":0.00039458557,"teacher_disagreement_score":0.0018083759,"about_ca_system_score_codex":0.00012137152,"about_ca_system_score_gemma":0.00007674211,"threshold_uncertainty_score":0.009563744},"labels":[],"label_agreement":null},{"id":"W4411209988","doi":"10.1128/jcm.01407-24","title":"Treatment and diagnostic challenges associated with the novel and rapidly emerging antifungal-resistant dermatophyte, <i>Trichophyton indotineae</i>","year":2025,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Nail Diseases and Treatments","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; Hamilton Regional Laboratory Medicine Program; McMaster University","funders":"","keywords":"Dermatophyte; Antifungal; Trichophyton; Trichophyton rubrum; Microbiology; Mycosis; Biology; Medicine; Antifungal drugs; Fungi imperfecti; Dermatology; Immunology","score_opus":0.06205527269449071,"score_gpt":0.38512787485464617,"score_spread":0.32307260216015543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411209988","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.75619715,0.075599514,0.019301496,0.09720609,0.0032567703,0.00044116424,0.00041359273,0.0005778301,0.04700638],"genre_scores_gemma":[0.9686844,0.010623225,0.00782149,0.008882134,0.0015541604,0.00004401588,0.00015670812,0.000036156787,0.002197668],"study_design_codex":"case_report","study_design_gemma":"not_applicable","domain_scores_codex":[0.9994561,0.00013642064,0.00006932847,0.0000826515,0.00010458008,0.00015092095],"domain_scores_gemma":[0.9991235,0.0002426452,0.00019479322,0.000027957243,0.00016098688,0.00025015592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006618847,0.00046741782,0.00044647368,0.00052171166,0.001054999,0.0013803173,0.00048929435,0.0018806234,0.0019142131],"category_scores_gemma":[0.0026980937,0.00024482873,0.00036330786,0.00032996424,0.0006289033,0.0012158349,0.0006148803,0.0019123999,0.0007320641],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005563668,0.00058602676,0.16073896,0.0012439863,0.0000890069,0.6368819,0.0016184446,0.0014416586,0.020996206,0.0023689752,0.031667877,0.14181066],"study_design_scores_gemma":[0.000052741525,0.00072304974,0.042894512,0.0010390402,0.00009148236,0.89283633,0.004208733,0.004440143,0.0051067704,0.0027999985,0.045731973,0.00007516298],"about_ca_topic_score_codex":0.0018897528,"about_ca_topic_score_gemma":0.0031749292,"teacher_disagreement_score":0.0019142131,"about_ca_system_score_codex":0.0008010742,"about_ca_system_score_gemma":0.00070810446,"threshold_uncertainty_score":0.006403625},"labels":[],"label_agreement":null},{"id":"W4412116165","doi":"10.1128/jcm.00796-25","title":"Accuracy of plasma cell-free DNA PCR for non-invasive diagnosis of mucormycosis","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Mucorales; Mucormycosis; Internal medicine; Medicine; Immunosuppression; Gastroenterology; Biomarker; Pathology; Biology","score_opus":0.04149573574072626,"score_gpt":0.3818507122863926,"score_spread":0.3403549765456664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412116165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986696,0.005610693,0.0054275542,0.00013547453,0.000062730636,0.000035917656,0.00021034379,0.00007794426,0.0017434297],"genre_scores_gemma":[0.99765944,0.00036982898,0.0016491287,0.000059815466,0.00002206107,0.00000833925,0.00012446976,0.000005074709,0.000101950995],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9952904,0.0018325141,0.0006243696,0.0008338753,0.0011147057,0.00030422554],"domain_scores_gemma":[0.99112356,0.005166926,0.001598334,0.0006155319,0.0011443441,0.00035133766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004131097,0.00058320037,0.000626298,0.0013274349,0.00020765448,0.0013014303,0.00046198946,0.00072950014,0.0007170321],"category_scores_gemma":[0.016328987,0.00029442666,0.0004240523,0.00033588972,0.00069927884,0.000753653,0.0005209655,0.0004371977,0.00062278466],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061639684,0.000047801008,0.94285667,0.00013980371,0.0000931043,0.0004135103,0.00025601743,0.00062559755,0.022212308,0.00008161797,0.00019696972,0.032460157],"study_design_scores_gemma":[0.000032018506,0.0010712595,0.9469499,0.00023588858,0.0001984111,0.007847117,0.0006813845,0.012488692,0.027422689,0.00026682738,0.0027581127,0.000047637193],"about_ca_topic_score_codex":0.0006629634,"about_ca_topic_score_gemma":0.00076656556,"teacher_disagreement_score":0.004131097,"about_ca_system_score_codex":0.00026988902,"about_ca_system_score_gemma":0.0002824498,"threshold_uncertainty_score":0.021847546},"labels":[],"label_agreement":null},{"id":"W4412116345","doi":"10.1128/jcm.00200-25","title":"Comparative performance of cobas 4800 HPV Test and Anyplex II HPV HR for high-risk human papillomavirus detection","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Horizon 2020 Framework Programme; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Concordance; Human papillomavirus; Medicine; Cervical cancer; Hybrid capture; Genotype; Kappa; Papillomaviridae; Virology; Internal medicine; Oncology; Cancer; Cervical intraepithelial neoplasia; Biology; Genetics; Gene; Mathematics","score_opus":0.07874832976638087,"score_gpt":0.4521042787440324,"score_spread":0.37335594897765156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412116345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98283225,0.003035157,0.009779492,0.000069461115,0.00012519695,0.00015846826,0.0007632767,0.00021380805,0.0030228153],"genre_scores_gemma":[0.99118465,0.00039387977,0.0069379956,0.000060836886,0.000032194515,0.00009982917,0.0006982715,0.00004835049,0.00054406596],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9667701,0.014840022,0.001773427,0.0067016096,0.008815419,0.0010994433],"domain_scores_gemma":[0.9609917,0.019833196,0.006158621,0.0029698582,0.008955991,0.0010906936],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.017620105,0.0014911494,0.0011879377,0.0027949668,0.00041701674,0.0022654803,0.0011978624,0.0013630281,0.0012253154],"category_scores_gemma":[0.03500987,0.000816965,0.0010671335,0.001758721,0.0009697229,0.001375957,0.001144567,0.000572909,0.0010135967],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012343224,0.0005890057,0.90815604,0.00070975465,0.0009923177,0.0001297596,0.001288115,0.002596759,0.030929485,0.00023803319,0.00060116383,0.041426342],"study_design_scores_gemma":[0.00024188054,0.008769594,0.8991904,0.00026240465,0.0010253569,0.0012986639,0.00092350534,0.027648967,0.05667562,0.00033862446,0.0034580166,0.00016695845],"about_ca_topic_score_codex":0.0034917337,"about_ca_topic_score_gemma":0.0032087015,"teacher_disagreement_score":0.017620105,"about_ca_system_score_codex":0.0009258347,"about_ca_system_score_gemma":0.0007655377,"threshold_uncertainty_score":0.09318513},"labels":[],"label_agreement":null},{"id":"W4414017252","doi":"10.1128/jcm.00208-25","title":"Enhancing blood culture volume with ultrathin-wall cannula devices","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Becton Dickinson (Canada); Lakeridge Health","funders":"","keywords":"Vacutainer; Blood volume; Blood culture; Medicine; Volume (thermodynamics); Cannula; Odds ratio; Surgery; Animal science; Internal medicine; Biology; Microbiology","score_opus":0.01498966830345308,"score_gpt":0.3241047670577599,"score_spread":0.30911509875430687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414017252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9652883,0.0043052626,0.027889522,0.00028678463,0.00014355562,0.0002870424,0.00021282147,0.00048663732,0.001100006],"genre_scores_gemma":[0.94411284,0.0015093987,0.052674163,0.00025885555,0.00014185885,0.00020524452,0.0003444691,0.00008525557,0.00066800864],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99480045,0.0023638494,0.00046991595,0.00041014777,0.0017760136,0.00017958376],"domain_scores_gemma":[0.9890526,0.004064653,0.0049715135,0.000809264,0.0008309928,0.00027093614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037860887,0.0005630525,0.0005705443,0.0006640845,0.00018046437,0.0019295812,0.0006807577,0.00030052607,0.000811483],"category_scores_gemma":[0.010725009,0.00026454288,0.0004606059,0.0006946493,0.0004951261,0.00085196533,0.0010419805,0.00054588245,0.0003342703],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076784235,0.0013668969,0.33838347,0.0016143026,0.00062464236,0.0006696464,0.001219886,0.0027255404,0.29120314,0.0006452185,0.0026490232,0.35121986],"study_design_scores_gemma":[0.00040163717,0.028350322,0.57107276,0.00081463763,0.0011154184,0.007933415,0.0014169227,0.019516021,0.3475717,0.0007305402,0.020863203,0.00021341858],"about_ca_topic_score_codex":0.0003734129,"about_ca_topic_score_gemma":0.00038539933,"teacher_disagreement_score":0.0037860887,"about_ca_system_score_codex":0.00033481792,"about_ca_system_score_gemma":0.0005006042,"threshold_uncertainty_score":0.020022988},"labels":[],"label_agreement":null},{"id":"W4414994681","doi":"10.1128/jcm.02042-24","title":"Comprehensive metabolomics combined with machine learning for the identification of SARS-CoV-2 and other viruses directly from upper respiratory samples","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Metabolomics; Biomarker discovery; Respiratory system; Metabolome; Biomarker; Viral load; Influenza A virus; Receiver operating characteristic; Respiratory tract infections","score_opus":0.07042979803744462,"score_gpt":0.37040069162473205,"score_spread":0.29997089358728746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414994681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88608223,0.0044387337,0.10564778,0.0005862124,0.00006969918,0.0002667186,0.0010945812,0.0007149788,0.0010990938],"genre_scores_gemma":[0.9194607,0.0011318702,0.07762003,0.0002881213,0.000057137004,0.00009642537,0.00092734786,0.000034815115,0.00038346715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998982,0.00046017455,0.00005755828,0.00022697842,0.00020762275,0.000065706794],"domain_scores_gemma":[0.999253,0.0003203842,0.00012999472,0.0000841269,0.00016142672,0.00005116276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002983714,0.00091298594,0.0008292461,0.0014404607,0.00029985807,0.00083272986,0.00032336434,0.00063170237,0.00038538314],"category_scores_gemma":[0.0027904967,0.00036399846,0.0007880128,0.00095090026,0.0003067746,0.0007053787,0.00057727465,0.0006114067,0.00026969428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022528514,0.0009385856,0.17334819,0.000385886,0.0010213603,0.00027082046,0.00016585563,0.030452548,0.5845582,0.0007390743,0.0011654693,0.20470123],"study_design_scores_gemma":[0.00011951775,0.0034635973,0.29545742,0.00007792186,0.00070078764,0.0009080749,0.0001308692,0.47565916,0.21651867,0.0034486826,0.0033102236,0.00020503617],"about_ca_topic_score_codex":0.0017893509,"about_ca_topic_score_gemma":0.0033005378,"teacher_disagreement_score":0.002983714,"about_ca_system_score_codex":0.00044648044,"about_ca_system_score_gemma":0.0007670157,"threshold_uncertainty_score":0.015779614},"labels":[],"label_agreement":null},{"id":"W4415403862","doi":"10.1128/jcm.00982-25","title":"Syphilis self-testing and implications for syphilis control and prevention","year":2025,"lang":"en","type":"letter","venue":"Journal of Clinical Microbiology","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Syphilis; Disease control; Incidence (geometry); Congenital syphilis; Treponematosis; Human immunodeficiency virus (HIV); Disease","score_opus":0.07838699417595303,"score_gpt":0.41263069502658384,"score_spread":0.3342437008506308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415403862","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005064492,0.0015903863,0.0000613269,0.9915087,0.0028677995,0.000006848164,0.0000067016654,0.0000075485,0.0034442716],"genre_scores_gemma":[0.017133793,0.006431119,0.00073788356,0.9282967,0.040756255,0.00004521266,0.00002044306,0.00001264549,0.006565981],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9941136,0.0025310894,0.0007183613,0.0004102958,0.0015596963,0.0006669626],"domain_scores_gemma":[0.98536867,0.007972743,0.00087824685,0.00038115642,0.0025579873,0.0028410957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045336904,0.000578413,0.00077827106,0.0007285207,0.0038902005,0.0034558037,0.0014125576,0.034715835,0.013910429],"category_scores_gemma":[0.031626903,0.00045006475,0.0009388976,0.0005129647,0.0042769737,0.0053558354,0.0021390917,0.025775554,0.004780866],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061482686,0.0002955684,0.006624261,0.00026541366,0.000014798531,0.024810009,0.0009190392,0.00024431632,0.00066469854,0.015958944,0.8839436,0.066197865],"study_design_scores_gemma":[0.00011740025,0.00029632336,0.006048024,0.002486902,0.000032220352,0.04856569,0.0030454358,0.0013755114,0.00036354215,0.043902025,0.8936641,0.000102850376],"about_ca_topic_score_codex":0.007691694,"about_ca_topic_score_gemma":0.012294727,"teacher_disagreement_score":0.034715835,"about_ca_system_score_codex":0.005714202,"about_ca_system_score_gemma":0.007936327,"threshold_uncertainty_score":0.046535075},"labels":[],"label_agreement":null},{"id":"W4415700958","doi":"10.1128/jcm.01236-24","title":"Non-invasive diagnosis of invasive fungal disease with cell-free DNA PCR","year":2025,"lang":"en","type":"review","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre; University of British Columbia; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Polymerase chain reaction; Fungal disease; Real-time polymerase chain reaction; Mycosis; Diagnostic test; Gold standard (test); Aspergillosis","score_opus":0.05590345537021714,"score_gpt":0.3862893338487032,"score_spread":0.33038587847848605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415700958","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001765982,0.99767154,0.0004228971,0.00028914397,0.00024908825,0.0000104406845,0.00003381327,0.000013397463,0.0011330186],"genre_scores_gemma":[0.0025359683,0.9954502,0.00088962464,0.00029303026,0.00025167994,0.000012104796,0.00007946083,0.0000042657734,0.00048374],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992586,0.00016234837,0.00013707463,0.00009830085,0.0003015727,0.00004199112],"domain_scores_gemma":[0.9985209,0.00081405387,0.00020707733,0.000045685272,0.0003633402,0.00004893729],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001145617,0.0007618763,0.0015072799,0.003571807,0.00017802416,0.001158888,0.00074644573,0.001011433,0.0029247608],"category_scores_gemma":[0.002303586,0.00026788787,0.00090074615,0.0017131339,0.00044770722,0.0010290645,0.00045648904,0.0012852038,0.0019077865],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058319914,0.000046963418,0.0007398745,0.023585115,0.00015827951,0.0003777803,0.000052806776,0.00023534666,0.0017949535,0.0014973504,0.016698353,0.9547549],"study_design_scores_gemma":[0.00002350402,0.00017565605,0.00366401,0.018749543,0.0004006098,0.008380506,0.00012527572,0.00030592014,0.002559017,0.0021823412,0.96338475,0.00004891712],"about_ca_topic_score_codex":0.00087422907,"about_ca_topic_score_gemma":0.0012726767,"teacher_disagreement_score":0.003571807,"about_ca_system_score_codex":0.0004307944,"about_ca_system_score_gemma":0.00097414496,"threshold_uncertainty_score":0.009784341},"labels":[],"label_agreement":null},{"id":"W4415736009","doi":"10.1128/jcm.01030-25","title":"Genomic re-evaluation of clinical isolates reveals a structured <i>Streptococcus suis</i> complex","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sensu stricto; Sensu; Genome; Genetic diversity; Diagnostic test; Molecular diagnostics; DNA sequencing; Genomic sequencing","score_opus":0.15377292302917023,"score_gpt":0.48745210250811516,"score_spread":0.33367917947894493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415736009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99582124,0.0004674168,0.0018936231,0.00013463863,0.000019865503,0.00003803489,0.00068903196,0.0000396046,0.00089646113],"genre_scores_gemma":[0.99533254,0.0001810951,0.0028601263,0.000108919594,0.000017598406,0.000011355301,0.0012287057,0.000015513384,0.00024414255],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99949837,0.00007314578,0.00006577763,0.00014186413,0.00012830543,0.00009247752],"domain_scores_gemma":[0.9991026,0.00027792098,0.00022427406,0.00008530272,0.00019415189,0.0001158537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000445578,0.00034135312,0.0003449954,0.0010507421,0.00031320378,0.0008784776,0.00020143489,0.0004483684,0.00082419976],"category_scores_gemma":[0.0016031349,0.00013395312,0.00037966153,0.00083813426,0.00038809754,0.00025279025,0.00035904555,0.0003900398,0.00033040493],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005682085,0.00011036038,0.25596064,0.0002917461,0.00009368782,0.0029648985,0.0012157944,0.0005003676,0.71657455,0.00025535707,0.0006526003,0.020811738],"study_design_scores_gemma":[0.000021790303,0.0008608158,0.79420114,0.000106420455,0.00028112746,0.01345309,0.003125656,0.004465694,0.17408414,0.00039510804,0.008969872,0.000035155244],"about_ca_topic_score_codex":0.0018009414,"about_ca_topic_score_gemma":0.0014689134,"teacher_disagreement_score":0.0018009414,"about_ca_system_score_codex":0.00018439806,"about_ca_system_score_gemma":0.00025178288,"threshold_uncertainty_score":0.0035809278},"labels":[],"label_agreement":null},{"id":"W4416994077","doi":"10.1128/jcm.01452-25","title":"Toxigenic diphtheria rarely detected amid rising cases of nontoxigenic <i>Corynebacterium diphtheriae</i> infections in Ontario, Canada, 2011–2023","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Diphtheria, Corynebacterium, and Tetanus","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; Public Health Ontario","funders":"","keywords":"Diphtheria; Public health; Vaccination; Epidemiology; Immunization; Penicillin","score_opus":0.016572265504608358,"score_gpt":0.2890877027876308,"score_spread":0.2725154372830224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416994077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98157173,0.001282168,0.00033554144,0.0005596876,0.000046922592,0.00019117587,0.008467855,0.00005613195,0.007488759],"genre_scores_gemma":[0.9947982,0.0006542628,0.0003120847,0.00031645352,0.000012949239,0.000021496297,0.0021430734,0.000013407275,0.0017281129],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990526,0.000034015302,0.0000546395,0.0001413832,0.00039110452,0.00032621433],"domain_scores_gemma":[0.9976521,0.00005852757,0.00048695342,0.000057711695,0.0010770543,0.0006677385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029899998,0.00058399973,0.00032923993,0.0014033614,0.0029876886,0.0014008605,0.0010989435,0.0004731493,0.0024579042],"category_scores_gemma":[0.0010040202,0.00048315106,0.00046108296,0.002571547,0.0010415983,0.00028913358,0.0008467548,0.0007060008,0.00029854648],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001601515,0.000041033963,0.9847342,0.0001290186,0.00005187219,0.0009432756,0.0010253371,0.00014401825,0.0032881503,0.000095668685,0.0035884075,0.005798921],"study_design_scores_gemma":[0.000007448215,0.000039263057,0.99526113,0.000037656497,0.000017906266,0.00049265864,0.0013043776,0.00019463271,0.0003064006,0.000014029693,0.0023141305,0.000010401037],"about_ca_topic_score_codex":0.99259347,"about_ca_topic_score_gemma":0.99608094,"teacher_disagreement_score":0.027863514,"about_ca_system_score_codex":0.027863514,"about_ca_system_score_gemma":0.04017363,"threshold_uncertainty_score":0.20216489},"labels":[],"label_agreement":null},{"id":"W4417438273","doi":"10.1128/jcm.01273-25","title":"HIV serologic reactivity varies with time of ART initiation in persons on long-term ART","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; U.S. Department of Defense; Gilead Sciences; ViiV Healthcare; Universidade de São Paulo; Henry M. Jackson Foundation; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Serology; Antibody; Human immunodeficiency virus (HIV); Antigen; Lentivirus; Viral disease; Immunopathology","score_opus":0.036206969921152646,"score_gpt":0.35223373654650836,"score_spread":0.3160267666253557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417438273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99879336,0.00020782459,0.00020147028,0.000023743449,0.0000044042135,0.0000069143316,0.00006142985,0.000006750053,0.00069401436],"genre_scores_gemma":[0.9996424,0.000049580824,0.00010502529,0.000024651423,0.000005816074,0.0000044791836,0.000049317397,0.0000013016361,0.00011744284],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99932337,0.00024883033,0.00006701426,0.00013186336,0.00010036689,0.00012845363],"domain_scores_gemma":[0.9984003,0.0005616606,0.0005993232,0.00014459544,0.00012308084,0.00017102233],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009874405,0.00019314575,0.0001677938,0.00058203563,0.00035602652,0.0006384322,0.00023936827,0.00040928784,0.0008881697],"category_scores_gemma":[0.003105267,0.00018307641,0.00020220634,0.0003841302,0.0002512529,0.0003070933,0.0003526601,0.000471764,0.00017189658],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023302848,0.00003947261,0.992562,0.000011159197,0.000021146872,0.00010309707,0.0002198718,0.00003634515,0.0028265181,0.000021189326,0.00004853089,0.0038777217],"study_design_scores_gemma":[0.0000013055545,0.00011662639,0.9983828,0.000006304095,0.000013405313,0.00031808397,0.00016063973,0.0001358532,0.00072071457,0.00002028761,0.00012151259,0.000002471249],"about_ca_topic_score_codex":0.0011030455,"about_ca_topic_score_gemma":0.0016005345,"teacher_disagreement_score":0.0011030455,"about_ca_system_score_codex":0.00016466365,"about_ca_system_score_gemma":0.00015077861,"threshold_uncertainty_score":0.0052221417},"labels":[],"label_agreement":null},{"id":"W7116840615","doi":"10.1128/jcm.01550-25","title":"Reaffirming the importance of nomenclature stability for <i>Candida auris</i> and its associated disease of candidiasis","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto; Institut National de Santé Publique du Québec","funders":"","keywords":"Nomenclature; Disease; Mycosis; MEDLINE","score_opus":0.045139834035469874,"score_gpt":0.3909182015141656,"score_spread":0.3457783674786957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7116840615","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5254335,0.038227316,0.058335286,0.25673306,0.037085664,0.0004601693,0.0010039258,0.0007366379,0.0819845],"genre_scores_gemma":[0.89310724,0.00961264,0.053414788,0.026331946,0.010264377,0.00012043139,0.0007375578,0.00036271356,0.006048257],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9840316,0.007274681,0.0026192209,0.0012178806,0.004027157,0.0008294499],"domain_scores_gemma":[0.9346633,0.016657628,0.014649021,0.009007645,0.02206349,0.0029588407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.024372736,0.00044050632,0.0007843105,0.0027835537,0.0033581199,0.008194934,0.0026915248,0.002031977,0.0023243388],"category_scores_gemma":[0.063015714,0.00023320434,0.0007013601,0.0026951227,0.0061804336,0.004801262,0.0028732081,0.0048284247,0.00088274514],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001316627,0.00026114914,0.17165378,0.002123237,0.0002912896,0.003507739,0.02323785,0.0012426015,0.0586603,0.13437513,0.06593454,0.5373958],"study_design_scores_gemma":[0.000098207434,0.0013577446,0.17109908,0.004434986,0.0005533865,0.016321627,0.028863333,0.003947415,0.03867443,0.07795484,0.65628046,0.00041457074],"about_ca_topic_score_codex":0.0083879065,"about_ca_topic_score_gemma":0.014622752,"teacher_disagreement_score":0.024372736,"about_ca_system_score_codex":0.0031289598,"about_ca_system_score_gemma":0.0068586473,"threshold_uncertainty_score":0.12889689},"labels":[],"label_agreement":null},{"id":"W7117453256","doi":"10.1128/jcm.00872-25","title":"Systematic evaluation and optimization of TaqMan qPCR assays targeting F <i>57</i> , ISMAP <i>02</i> , and IS <i>900</i> for multiplex detection of <i>Mycobacterium avium</i> subsp. <i>paratuberculosis</i>","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Memorial University of Newfoundland; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Dairy Farmers of Canada","keywords":"TaqMan; Multiplex; Paratuberculosis; Multiplex polymerase chain reaction; Real-time polymerase chain reaction; Assay sensitivity","score_opus":0.03236877829540892,"score_gpt":0.3747352562908565,"score_spread":0.3423664779954476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7117453256","genre_codex":"empirical","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6569109,0.013332503,0.31625515,0.0005171102,0.00048752,0.0032918623,0.0021423742,0.0012331129,0.005829556],"genre_scores_gemma":[0.5718518,0.0054395637,0.41144228,0.0004697009,0.00011162292,0.0022231047,0.0047403197,0.00025458628,0.003467057],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.98860246,0.0032310102,0.0011594401,0.0018938374,0.004530094,0.0005832476],"domain_scores_gemma":[0.99606305,0.0011028087,0.0008211001,0.00039081354,0.0015107484,0.00011147015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010395101,0.0013271613,0.0015801649,0.0018482668,0.00048032243,0.0015821462,0.001296894,0.0009792653,0.0006523861],"category_scores_gemma":[0.009014344,0.0011776636,0.0012824906,0.0013851257,0.0011219116,0.00074703316,0.0009900621,0.0008968525,0.00073411973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011109004,0.00016744864,0.003607739,0.00054172595,0.00006361928,0.0000575552,0.0001825615,0.002395658,0.9685272,0.0004755473,0.00025643216,0.023613384],"study_design_scores_gemma":[0.000030291545,0.0013191814,0.0060318876,0.00009765426,0.00027522628,0.00026879608,0.00015847872,0.0076925494,0.9745369,0.00019134786,0.009334048,0.0000635555],"about_ca_topic_score_codex":0.0011418936,"about_ca_topic_score_gemma":0.003093376,"teacher_disagreement_score":0.010395101,"about_ca_system_score_codex":0.0009542824,"about_ca_system_score_gemma":0.0022561357,"threshold_uncertainty_score":0.054975152},"labels":[],"label_agreement":null},{"id":"W949541546","doi":"10.1128/jcm.01493-15","title":"Rapid Identification of Bacteria Directly from Positive Blood Cultures by Use of a Serum Separator Tube, Smudge Plate Preparation, and Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Mass spectrometry; Bacilli; Matrix-assisted laser desorption/ionization; Chromatography; Bacteria; Microbiology; Separator (oil production); Matrix (chemical analysis); Blood culture; Desorption; Chemistry; Biology; Analytical Chemistry (journal); Antibiotics","score_opus":0.025518870051515114,"score_gpt":0.32064856637289085,"score_spread":0.29512969632137576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W949541546","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93261033,0.0021447742,0.060855903,0.000320119,0.00010831185,0.00057780946,0.0008249748,0.00040808538,0.0021496816],"genre_scores_gemma":[0.87951726,0.0019000404,0.11467118,0.00020224291,0.00007780179,0.00032997856,0.0013665017,0.000067756395,0.0018672091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803156,0.00046885427,0.00021305776,0.00018139405,0.000979547,0.0001256172],"domain_scores_gemma":[0.9985662,0.0005835476,0.0002132024,0.00014002972,0.00036793025,0.00012905581],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013845039,0.00073110225,0.0005845454,0.0021782967,0.00033783817,0.0006035189,0.0003798802,0.0004188276,0.00093831937],"category_scores_gemma":[0.0030587383,0.0003150423,0.00021494715,0.0006951241,0.00043665542,0.00041254517,0.0005936496,0.0004357936,0.0011415754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036477318,0.00013341759,0.016762534,0.000109775,0.000018694587,0.0003462063,0.0001721731,0.000076495184,0.95364374,0.00006070729,0.00023921813,0.028072314],"study_design_scores_gemma":[0.00004602603,0.0012641813,0.08174213,0.000059435795,0.00006632623,0.006192354,0.00024069226,0.0037992161,0.9030646,0.00018403443,0.003283922,0.000057021487],"about_ca_topic_score_codex":0.0005592286,"about_ca_topic_score_gemma":0.0008407099,"teacher_disagreement_score":0.0021782967,"about_ca_system_score_codex":0.00013375453,"about_ca_system_score_gemma":0.0003512974,"threshold_uncertainty_score":0.0073220134},"labels":[],"label_agreement":null},{"id":"W9650930","doi":"10.1128/jcm.36.7.1886-1889.1998","title":"SELEKSI BACILLUS SP. SEBAGAI BIOKONTROL VIBRIO HARVEYI DI TAMBAK UDANG","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Aquatic life and conservation","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Vibrio harveyi; Biology; Vibrio; Bacteria","score_opus":0.04433278158604595,"score_gpt":0.29118098107577506,"score_spread":0.2468481994897291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W9650930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98174506,0.0038184861,0.0010981675,0.0003308632,0.00008588693,0.00009645317,0.00045200894,0.000075256045,0.012297692],"genre_scores_gemma":[0.9803293,0.0028724896,0.0030139512,0.00016302764,0.000015150431,0.000037599337,0.0010895528,0.000013986557,0.012464937],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99980444,0.000020539755,0.000017263728,0.00003869502,0.00006667053,0.000052481526],"domain_scores_gemma":[0.99984896,0.000017468139,0.00002997676,0.000010692774,0.00006686892,0.000025940471],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018089748,0.00052293664,0.00027587765,0.001048707,0.0005807124,0.0006272425,0.00025491428,0.00023714933,0.0026365584],"category_scores_gemma":[0.00032222847,0.00013892156,0.00017640437,0.0008663495,0.00025421794,0.00035948498,0.0005883799,0.00034439174,0.00066173245],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005983712,0.0004105378,0.27628854,0.00069998356,0.0000769234,0.0031518012,0.0019534642,0.00045511388,0.3154115,0.00080992206,0.001816176,0.3983278],"study_design_scores_gemma":[0.000091860056,0.0019844526,0.72379166,0.00024955557,0.00026892885,0.011416049,0.0072440715,0.0017919214,0.15425086,0.0008707563,0.09794891,0.000090995636],"about_ca_topic_score_codex":0.010923157,"about_ca_topic_score_gemma":0.016014947,"teacher_disagreement_score":0.010923157,"about_ca_system_score_codex":0.00044976687,"about_ca_system_score_gemma":0.0007386805,"threshold_uncertainty_score":0.021719158},"labels":[],"label_agreement":null},{"id":"W986144565","doi":"10.1128/jcm.01137-15","title":"Cloacibacillus sp., a Potential Human Pathogen Associated with Bacteremia in Quebec and New Brunswick","year":2015,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dr. Georges-L.-Dumont University Hospital Centre; Hôpital Saint-Luc; McGill University Health Centre; Institut National de Santé Publique du Québec","funders":"","keywords":"Bacteremia; Biology; Pathogen; Microbiology; Human pathogen; Antibiotics; 16S ribosomal RNA; Ribosomal RNA; Bacteria; Gene; Genetics","score_opus":0.044810040257611414,"score_gpt":0.3181829158468233,"score_spread":0.27337287558921186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W986144565","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"metacan-v3-hybrid-931329e0061c","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890164,0.002710963,0.00041141943,0.0007613118,0.000026829577,0.000074802665,0.00032413565,0.00001947752,0.0066545405],"genre_scores_gemma":[0.9966438,0.0009322311,0.00036681833,0.00019064525,0.000009371885,0.000008525447,0.00015415986,0.000004706062,0.0016898096],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99968195,0.00003636706,0.000026261418,0.000043077824,0.00008612397,0.00012620035],"domain_scores_gemma":[0.9991604,0.0001066662,0.00021585217,0.000020763198,0.0002838048,0.00021249878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025854472,0.00033570567,0.00021745278,0.0013138984,0.0026099116,0.0008914813,0.00066450017,0.00071549835,0.0019737526],"category_scores_gemma":[0.0010691233,0.0002475907,0.00014448646,0.001306157,0.0011769807,0.00030502363,0.0004514423,0.0005548053,0.00015014676],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015490517,0.000062573854,0.92598915,0.00013825092,0.00003671119,0.038602095,0.0030626638,0.00041890622,0.010323131,0.00040104135,0.0015843458,0.019226126],"study_design_scores_gemma":[0.000014890653,0.00014513626,0.9512717,0.00013048325,0.00004165455,0.033402648,0.007136759,0.00075355294,0.0011602489,0.00010365658,0.005787595,0.00005163241],"about_ca_topic_score_codex":0.9718394,"about_ca_topic_score_gemma":0.98838115,"teacher_disagreement_score":0.028160572,"about_ca_system_score_codex":0.011490892,"about_ca_system_score_gemma":0.009585181,"threshold_uncertainty_score":0.08337265},"labels":[],"label_agreement":null}]}