{"meta":{"query_hash":"584c5b80feca","filters":{"venue":"Journal of Plant Development"},"cohort_total":12,"direct_labels_cover":0,"predictions_cover":12,"exported":12,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/584c5b80feca","api":"https://metacan.xera.ac/api/v1/cohort?venue=Journal+of+Plant+Development"},"results":[{"id":"W3132444974","doi":"10.33628/jpd.2020.27.1.151","title":"RESPONSE OF MDR1 AND PDR1 ATP-BINDING CASSETTE-TYPE TRANSPORTER GENES TO BIOTIC SIGNALS IN WHEAT FLAG LEAF TIPS","year":2020,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Flag (linear algebra); ATP-binding cassette transporter; Gene; Transporter; Biology; Genetics; Mathematics; Algebra over a field","score_opus":0.043128483907613736,"score_gpt":0.23369242183359623,"score_spread":0.1905639379259825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132444974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690187,0.00012903512,0.000009168664,0.0027125564,0.000102564096,0.000075620395,0.000055792378,0.0000036434187,0.0000097311095],"genre_scores_gemma":[0.9989457,0.00009700103,0.00049735507,0.00037192402,0.000030202285,5.289892e-7,0.000015857064,8.06223e-7,0.000040587336],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99905163,0.000081337734,0.00046967232,0.00009934058,0.00015052439,0.00014751237],"domain_scores_gemma":[0.9994121,0.00022994934,0.000155537,0.000018195404,0.00006399352,0.000120208395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045896496,0.000098269105,0.0002367053,0.00005082221,0.00006243868,0.000026565822,0.00013856468,0.000048411886,0.00014116286],"category_scores_gemma":[0.000056959776,0.00004184769,0.000037537517,0.0002095008,0.0000130505705,0.00010733564,0.000026441063,0.00014664771,0.000010022211],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010966596,0.0000427366,0.0075741974,0.000009704007,0.000024520334,0.00010183856,0.0012547912,0.000019086521,0.9849016,5.3549974e-7,0.0013240898,0.003650217],"study_design_scores_gemma":[0.00043580908,0.0009258961,0.48462826,0.00045327304,0.000020090223,0.00062522874,0.0014250432,0.000027291406,0.4280183,0.000006641602,0.083162025,0.00027214552],"about_ca_topic_score_codex":0.000034640805,"about_ca_topic_score_gemma":0.00016250685,"teacher_disagreement_score":0.55688334,"about_ca_system_score_codex":0.00003747572,"about_ca_system_score_gemma":0.0000464111,"threshold_uncertainty_score":0.17064992},"labels":[],"label_agreement":null},{"id":"W3132774318","doi":"10.33628/jpd.2020.27.1.187","title":"PROTOPLAST AT THE TIME OF GENOME EDITING","year":2020,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada","keywords":"Protoplast; Genome editing; Genome; Biology; Computational biology; Genetics; Computer science; Gene","score_opus":0.007575469906002075,"score_gpt":0.22987466113984117,"score_spread":0.2222991912338391,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132774318","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929001,0.0005394016,0.0057573887,0.00038053308,0.00009984586,0.00012305666,0.000015731568,0.0000017698725,0.00018222706],"genre_scores_gemma":[0.99579585,0.000046779725,0.0032069113,0.0002188355,0.0004446698,0.0000040145405,0.000030206627,0.000011001381,0.00024175823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946576,0.000010121128,0.0002525312,0.000058729802,0.00012732581,0.00008550329],"domain_scores_gemma":[0.99970824,0.000009161878,0.00013716142,0.00004642213,0.000045898774,0.000053095242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015343743,0.000060089584,0.00009508206,0.000013397209,0.000029421477,0.0000047111007,0.000114462055,0.00002831186,0.000044057357],"category_scores_gemma":[0.000047047055,0.00004000175,0.000039899376,0.000028905588,0.000012093204,0.000001123873,0.000070986105,0.000056218654,0.000006618265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006339778,0.000009995954,0.00049097365,0.000028996856,0.00007558182,0.0000103313005,0.0005439808,0.0016409005,0.9922026,0.0000015404578,0.004426655,0.00050506776],"study_design_scores_gemma":[0.00033875497,0.00016917764,0.003311257,0.000029159237,0.000011805269,0.00018024583,0.00008879695,0.00008952305,0.8235677,0.0000022938286,0.17212321,0.000088086956],"about_ca_topic_score_codex":1.6537932e-7,"about_ca_topic_score_gemma":0.0000010024742,"teacher_disagreement_score":0.16863489,"about_ca_system_score_codex":0.000010022254,"about_ca_system_score_gemma":0.000069042755,"threshold_uncertainty_score":0.16312239},"labels":[],"label_agreement":null},{"id":"W4206755392","doi":"10.47743/10.47743/jpd.2021.28.1.884","title":"RECENT ADVANCES IN POST-TRANSLATIONAL REGULATION OF PLANT DEFENSE RESPONSES BEYOND PHOSPHORYLATION","year":2021,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Phosphorylation; Posttranslational modification; Translational research; Cell biology; Biology; Computational biology; Biotechnology; Biochemistry","score_opus":0.017453902707527662,"score_gpt":0.22843460411889727,"score_spread":0.2109807014113696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206755392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959639,0.0027524102,0.000018159544,0.0005369527,0.00023615763,0.00005598129,0.00026459413,0.0000033147232,0.00016857879],"genre_scores_gemma":[0.9938346,0.003556892,0.0017470457,0.000082456325,0.00004328579,0.0000015319729,0.0006429592,7.997667e-7,0.00009038922],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988652,0.000106849024,0.0005781485,0.00008861498,0.00024916668,0.00011202834],"domain_scores_gemma":[0.9989131,0.00036930759,0.00034752907,0.000024533709,0.0003056499,0.00003985799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004232893,0.00008269802,0.00017040456,0.00005149156,0.00007801877,0.000019046609,0.00008439974,0.000051973308,0.00040750825],"category_scores_gemma":[0.000121076264,0.00003852329,0.000048081387,0.00019797948,0.000014571033,0.00026432335,0.000016683109,0.00013979989,0.000003142965],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015702221,0.0003339999,0.013308682,0.000013665848,0.000047485613,0.00007260359,0.0007346005,0.00027379818,0.8290517,0.00018885729,0.00065542274,0.15374899],"study_design_scores_gemma":[0.00032695621,0.00012446044,0.6914167,0.0002095059,0.000009874641,0.0005881537,0.0005170171,0.0000417267,0.102037415,0.0005136663,0.20408025,0.00013427294],"about_ca_topic_score_codex":0.000009612533,"about_ca_topic_score_gemma":0.0009922973,"teacher_disagreement_score":0.72701424,"about_ca_system_score_codex":0.000058986072,"about_ca_system_score_gemma":0.00013969402,"threshold_uncertainty_score":0.44619298},"labels":[],"label_agreement":null},{"id":"W4299674230","doi":"10.47743/jpd.2021.28.1.884","title":"RECENT ADVANCES IN POST-TRANSLATIONAL REGULATION OF PLANT DEFENSE RESPONSES BEYOND PHOSPHORYLATION","year":2021,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Landscape and Cultural Studies","field":"Arts and Humanities","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Effector; Phosphorylation; Plant Immunity; Posttranslational modification; Biology; Virulence; Computational biology; Cell biology; Protein phosphorylation; Immune system; Genetics; Biochemistry; Arabidopsis; Protein kinase A; Gene","score_opus":0.02159058401559546,"score_gpt":0.22111072867868767,"score_spread":0.1995201446630922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4299674230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97043455,0.023200728,0.000023216733,0.0011022971,0.0006430293,0.00010366489,0.00019151434,0.0000068685454,0.004294134],"genre_scores_gemma":[0.9890454,0.008089837,0.0011218273,0.00019241308,0.00018845448,0.0000037739676,0.0003014504,0.000008236291,0.0010486062],"study_design_codex":"qualitative","study_design_gemma":"not_applicable","domain_scores_codex":[0.99892,0.000045591103,0.00053786294,0.000076824246,0.00031900872,0.00010070201],"domain_scores_gemma":[0.99914175,0.00011627506,0.00028243422,0.0000340425,0.00039784456,0.000027648097],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025537648,0.00008637895,0.00019229403,0.00008850143,0.00010740221,0.000026828056,0.000047749578,0.00002499615,0.0006403101],"category_scores_gemma":[0.000051356285,0.00005958635,0.000043107582,0.000045605255,0.000026855712,0.00025840238,0.000012110714,0.00008033926,0.0000036198135],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011667236,0.0015160155,0.0495329,0.000465864,0.0012599444,0.00082013285,0.48525125,0.0018898603,0.015055592,0.12987253,0.03435559,0.26831308],"study_design_scores_gemma":[0.0009291514,0.00009516942,0.061233956,0.00025228175,0.000028817132,0.000119575045,0.0054304195,0.00001881141,0.006526172,0.002767384,0.9224226,0.00017566199],"about_ca_topic_score_codex":0.0000026656305,"about_ca_topic_score_gemma":0.001276726,"teacher_disagreement_score":0.888067,"about_ca_system_score_codex":0.00004436364,"about_ca_system_score_gemma":0.00019247107,"threshold_uncertainty_score":0.7010947},"labels":[],"label_agreement":null},{"id":"W4313208455","doi":"10.47743/jpd.2022.29.1.914","title":"CELL DEATH AND ANTI-CELL DEATH IN TWO WHEAT CULTIVARS AND THE IMPLICATION OF THEIR INVOLVEMENT IN DISEASE RESPONSE","year":2022,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Mycotoxins in Agriculture and Food","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Cultivar; Biology; Fusarium; Pathogen; Programmed cell death; Arabidopsis thaliana; Toxin; Fumonisin; Botany; Gene; Microbiology; Genetics","score_opus":0.01910625070449026,"score_gpt":0.22093256092338104,"score_spread":0.20182631021889078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313208455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99804634,0.00094227324,0.0000014673175,0.00066247274,0.000035474015,0.00022563426,0.00004264013,0.0000018972473,0.000041793595],"genre_scores_gemma":[0.99920934,0.00042140158,0.00017108678,0.000117778036,0.000016349464,0.00001708585,0.000017068383,5.873447e-7,0.00002929461],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99889076,0.00023227185,0.00040085913,0.00012266095,0.00022230818,0.00013114154],"domain_scores_gemma":[0.99935603,0.00028883285,0.00022568356,0.000030208086,0.000028542654,0.00007069915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012013208,0.00009779534,0.0001938388,0.00003753508,0.00011074554,0.000018910458,0.0001605792,0.000016855794,0.000020455798],"category_scores_gemma":[0.000017216194,0.00003039289,0.000032859694,0.00015313203,0.000020866222,0.000052455973,0.00012158,0.0001617209,2.1076369e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00533186,0.0010823683,0.48999906,0.000053026135,0.00003992648,0.00011710363,0.010281926,0.0001613608,0.48666564,0.00054855633,0.0007464045,0.0049727643],"study_design_scores_gemma":[0.0014591763,0.00014230494,0.98442435,0.00004803908,0.00000949134,0.0000413416,0.0016200145,0.000036740363,0.006568759,0.00048407595,0.0050559663,0.00010971607],"about_ca_topic_score_codex":0.00005789059,"about_ca_topic_score_gemma":0.00009466596,"teacher_disagreement_score":0.49442533,"about_ca_system_score_codex":0.00006768514,"about_ca_system_score_gemma":0.000039328777,"threshold_uncertainty_score":0.123938605},"labels":[],"label_agreement":null},{"id":"W4313208468","doi":"10.47743/jpd.2022.29.1.917","title":"INVESTIGATING PROTEIN PARTNERS OF ATMKK1 AS PART OF THE MAPK SIGNALING PATHWAY DURING SALT STRESS","year":2022,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Protein kinase A; Arabidopsis thaliana; Biology; Signal transduction; Upstream and downstream (DNA); Arabidopsis; Cell biology; Kinase; MAPK/ERK pathway; Computational biology; Upstream (networking); Genetics; Computer science; Gene","score_opus":0.013644040229849287,"score_gpt":0.2309126878692987,"score_spread":0.21726864763944942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313208468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99936026,0.00015085946,0.000043259097,0.000058946942,0.00010990253,0.000105132196,0.0000783417,0.0000016804038,0.000091593596],"genre_scores_gemma":[0.9978526,0.000011788619,0.001617739,0.00004739764,0.000046457295,0.000009807501,0.000038263854,0.000009970673,0.0003659282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983029,0.00017121444,0.00069594424,0.00013267386,0.000538739,0.00015852287],"domain_scores_gemma":[0.9986352,0.000021247437,0.0010173247,0.00015307228,0.00009632778,0.000076862394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005668163,0.000114852075,0.00022889001,0.000077112265,0.00014846845,0.0000075536454,0.00035931086,0.000042364103,0.000059565635],"category_scores_gemma":[0.00015506688,0.000083776,0.00012536698,0.000131763,0.000036037898,0.0000042304605,0.00028557345,0.0001803351,4.224007e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006626454,0.000053017222,0.0034531713,0.000052747127,0.00017655648,0.000016718423,0.00040211936,0.0042202864,0.9904467,0.000011306115,0.0009836972,0.00011744276],"study_design_scores_gemma":[0.00035106222,0.0000709225,0.00060349086,0.00022375247,0.000023160666,0.000098291144,0.000545142,0.000018084394,0.9911935,0.000027335147,0.006742252,0.00010304295],"about_ca_topic_score_codex":0.00000590452,"about_ca_topic_score_gemma":0.0000075076427,"teacher_disagreement_score":0.005758555,"about_ca_system_score_codex":0.000038951315,"about_ca_system_score_gemma":0.0005397009,"threshold_uncertainty_score":0.3416286},"labels":[],"label_agreement":null},{"id":"W4313209268","doi":"10.47743/jpd.2022.29.1.915","title":"GYPSOPHILA × MOLDAVICA PÎNZARU NOTHOSP. NOVA IN THE REPUBLIC OF MOLDOVA","year":2022,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Botany and Plant Ecology Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Geography; Nova scotia; Forestry; Botany; Biology; Archaeology","score_opus":0.03703798566566307,"score_gpt":0.21294674222980398,"score_spread":0.1759087565641409,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313209268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99476814,0.00034159634,6.990527e-7,0.00398365,0.00028751235,0.000087937035,0.00005803782,0.0000031278894,0.0004692959],"genre_scores_gemma":[0.99901867,0.00005971306,0.00019380974,0.0005843799,0.000056996527,0.0000057764214,0.000016416196,4.0573767e-7,0.0000638166],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99871683,0.00014388582,0.00050134433,0.000093305825,0.00037091476,0.00017374671],"domain_scores_gemma":[0.99907523,0.0004635738,0.00035255955,0.00002997868,0.000049803362,0.0000288705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014300686,0.00008644884,0.00022376551,0.00003226495,0.0002007501,0.00001109165,0.00040269806,0.000034085147,0.00055798114],"category_scores_gemma":[0.000058638157,0.000028473356,0.00006336825,0.00030901225,0.000028046336,0.000050023653,0.00009921227,0.00028072737,0.0000023373864],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022075209,0.0039188536,0.5530008,0.00008889331,0.00097508973,0.0040316093,0.021973997,0.00062036613,0.07871222,0.0053521665,0.21069443,0.11842408],"study_design_scores_gemma":[0.0002527624,0.00032526325,0.84008616,0.000019555488,0.0000108326685,0.0007433222,0.0018817588,0.000006347482,0.00038460735,0.00046137063,0.15571149,0.00011654969],"about_ca_topic_score_codex":0.000026914493,"about_ca_topic_score_gemma":0.00032531813,"teacher_disagreement_score":0.28708535,"about_ca_system_score_codex":0.00004460015,"about_ca_system_score_gemma":0.000042214648,"threshold_uncertainty_score":0.61095023},"labels":[],"label_agreement":null},{"id":"W4390054172","doi":"10.47743/jpd.2023.30.1.928","title":"ELECTRICAL SIGNALING AND ITS PHYSIOLOGICAL AND BIOCHEMICAL IMPACTS DURING HERBIVORE ATTACKS: A BRIEF REVIEW ON ARABIDOPSIS THALIANA","year":2023,"lang":"en","type":"review","venue":"Journal of Plant Development","topic":"Plant and Biological Electrophysiology Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Arabidopsis; Arabidopsis thaliana; Herbivore; Biology; Insect; Neuroscience; Ecology; Gene; Genetics","score_opus":0.08047315844379099,"score_gpt":0.2879017853940656,"score_spread":0.20742862695027459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390054172","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19729705,0.80211145,3.222069e-8,0.00014118866,0.00005303695,0.00029755247,0.00006869892,0.000025091771,0.000005889382],"genre_scores_gemma":[0.002314988,0.9969768,0.000029719022,0.0002102901,0.0002841529,0.000018339591,0.00012263263,0.000003331369,0.000039727587],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99742496,0.00022640664,0.0010199457,0.00047183584,0.00031829477,0.00053855503],"domain_scores_gemma":[0.998003,0.00088239746,0.0007508628,0.000037368016,0.00007646602,0.00024988255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000446598,0.00052553305,0.0021770503,0.000057654812,0.00024086518,0.000037451737,0.0003050101,0.00038729885,0.000025983263],"category_scores_gemma":[0.00042681274,0.00016314557,0.00030254238,0.00040359076,0.00006880665,0.000046375004,0.00018754101,0.00076608517,0.000018282939],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007016186,0.0006842858,0.00007380403,0.04528428,0.0035420598,0.0027273572,0.00009271767,5.212207e-7,0.08834693,0.00014446514,0.028760916,0.82964104],"study_design_scores_gemma":[0.0009241683,0.0056725345,0.011226946,0.23130634,0.0017751992,0.006722244,0.000050973722,0.000004521592,0.001489335,0.00035299995,0.7372987,0.0031760128],"about_ca_topic_score_codex":0.0000016799638,"about_ca_topic_score_gemma":0.0000031051106,"teacher_disagreement_score":0.826465,"about_ca_system_score_codex":0.000089098656,"about_ca_system_score_gemma":0.00006203419,"threshold_uncertainty_score":0.6652883},"labels":[],"label_agreement":null},{"id":"W4406118946","doi":"10.47743/jpd.2024.31.1.956","title":"ARABIDOPSIS ATMKK1 KNOCKOUT MUTANT FLOWERS UNDER SHORT DAY CONDITIONS","year":2024,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Arabidopsis; Mutant; Biology; Genetics; Gene","score_opus":0.027794440248997083,"score_gpt":0.2616275861261412,"score_spread":0.2338331458771441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406118946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968518,0.000501191,0.00007626545,0.0013648233,0.00051809684,0.00009587832,0.00018163197,0.000026439988,0.0003838577],"genre_scores_gemma":[0.9988016,0.00014385689,0.00024690255,0.00017228769,0.00015174609,0.0000047270582,0.00019062974,0.0000012946865,0.00028698164],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99866074,0.00009129134,0.00038992724,0.000175494,0.00039095563,0.0002916182],"domain_scores_gemma":[0.9993383,0.0003356156,0.00005331797,0.000030466244,0.00007844731,0.00016382252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069593627,0.00013146935,0.00019923157,0.000058480764,0.00014145832,0.0000879929,0.00026744805,0.000098509816,0.00050702435],"category_scores_gemma":[0.000050873077,0.00004712317,0.00010998527,0.0002379042,0.000048200356,0.00008858368,0.000060002076,0.00029445742,0.000111589055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045921977,0.00008596965,0.0014988192,0.000012923722,0.00034049898,0.0016826162,0.00019021507,0.000033235032,0.9625435,0.0004048182,0.017454207,0.015707305],"study_design_scores_gemma":[0.00035491635,0.00067530683,0.31833324,0.00079809566,0.00011562895,0.0077452604,0.000819868,0.00030173597,0.094640076,0.0018120717,0.5735095,0.00089427317],"about_ca_topic_score_codex":0.000004762431,"about_ca_topic_score_gemma":0.00008325082,"teacher_disagreement_score":0.8679034,"about_ca_system_score_codex":0.00010666316,"about_ca_system_score_gemma":0.00014043385,"threshold_uncertainty_score":0.5551561},"labels":[],"label_agreement":null},{"id":"W4406118965","doi":"10.47743/jpd.2024.31.1.943","title":"COMPUTATIONAL SCREENING TO IDENTIFY GENES INVOLVED IN DNA REPAIR IN ARABIDOPSIS THALIANA","year":2024,"lang":"en","type":"article","venue":"Journal of Plant Development","topic":"Leaf Properties and Growth Measurement","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Arabidopsis thaliana; Gene; Genetics; Biology; Computational biology; DNA; Arabidopsis; DNA repair; Mutant","score_opus":0.06334272223848793,"score_gpt":0.26018687493499265,"score_spread":0.19684415269650474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406118965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99671096,0.00092932465,0.00005639585,0.0019273126,0.00022395939,0.00009697503,0.00001161411,0.000013027031,0.000030418305],"genre_scores_gemma":[0.9959764,0.00002961377,0.0035541474,0.00026319595,0.00009532464,0.0000049427463,0.000013685863,8.873821e-7,0.00006181528],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99873966,0.000050890198,0.0005025902,0.00013820012,0.00039382072,0.00017485449],"domain_scores_gemma":[0.9997016,0.00008497043,0.000062582636,0.00001571114,0.000055210065,0.000079932506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009358088,0.00009042195,0.00015945538,0.00008334101,0.000042139607,0.000055268625,0.00013636456,0.00003683462,0.0000844765],"category_scores_gemma":[0.00003446651,0.000034789988,0.00006113238,0.00031586722,0.0000071271375,0.00011704337,0.000041775376,0.00012843497,0.00001640512],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00062996126,0.0005108074,0.33976322,0.00023940328,0.00034914835,0.0026292738,0.0066606733,0.012578336,0.11970257,0.0003476505,0.041070033,0.4755189],"study_design_scores_gemma":[0.00022503594,0.00015695997,0.9291138,0.00093845575,0.000006593794,0.00006066612,0.00072532205,0.0007489266,0.0022192134,0.00039023702,0.06520258,0.0002121868],"about_ca_topic_score_codex":0.00008338521,"about_ca_topic_score_gemma":0.0010907752,"teacher_disagreement_score":0.5893506,"about_ca_system_score_codex":0.00012853704,"about_ca_system_score_gemma":0.000056332337,"threshold_uncertainty_score":0.14186946},"labels":[],"label_agreement":null},{"id":"W7118075936","doi":"10.47743/jpd.2025.32.1.976","title":"PREDICTION OF 3D STRUCTURE OF MITOGEN-ACTIVATED PROTEIN KINASE KINASE 2 USING ALPHAFOLD 2 AND SIMULATION OF ITS INTERACTION WITH MITOGEN-ACTIVATED PROTEIN KINASE 6 IN ARABIDOPSIS THALIANA","year":2025,"lang":"","type":"article","venue":"Journal of Plant Development","topic":"Melanoma and MAPK Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Mitogen-activated protein kinase kinase; MAP kinase kinase kinase; MAP2K7; Cyclin-dependent kinase 9; Protein kinase A; c-Raf; Docking (animal); Cyclin-dependent kinase 2; ASK1","score_opus":0.01961443145398404,"score_gpt":0.24467038891252194,"score_spread":0.2250559574585379,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7118075936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99532723,0.001088045,0.0015602491,0.000022198741,0.0004341692,0.001183171,0.00036303143,0.0000032662372,0.00001862745],"genre_scores_gemma":[0.99684435,0.00008801077,0.0027433136,0.0000077848445,0.000060765007,0.000009787697,0.00015902516,0.000025350095,0.00006158262],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968925,0.00025151644,0.0016985926,0.00039759555,0.0004599614,0.00029979815],"domain_scores_gemma":[0.99660915,0.000043115997,0.0022377209,0.00023432472,0.00074775703,0.00012793847],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00036213594,0.0004147556,0.00075751095,0.0006264969,0.00007841916,0.00002155657,0.00017875896,0.00040074074,0.000025843736],"category_scores_gemma":[0.00021637151,0.00036162278,0.000100897756,0.00048796,0.000087422726,0.000067607965,0.000097552314,0.0003511529,9.7515795e-8],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0070055393,0.00037688416,0.002310821,0.0013953013,0.00067723595,0.00005467714,0.0007738401,0.008581673,0.97502524,0.0000086311165,0.000014963645,0.0037751785],"study_design_scores_gemma":[0.0034445948,0.0011852873,0.0033748536,0.004528511,0.00015744267,0.00007000301,0.0003714589,0.0023030373,0.9836855,0.000017264016,0.0005891837,0.00027287027],"about_ca_topic_score_codex":0.00006489438,"about_ca_topic_score_gemma":0.000057233967,"teacher_disagreement_score":0.008660238,"about_ca_system_score_codex":0.0002170238,"about_ca_system_score_gemma":0.0011247689,"threshold_uncertainty_score":0.9998836},"labels":[],"label_agreement":null},{"id":"W7118080542","doi":"10.47743/jpd.2025.32.1.974","title":"INVESTIGATING THE INTERACTOME OF ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASES: AN INTEGRATIVE APPROACH USING MULTIPLE SOURCES OF EVIDENCE","year":2025,"lang":"","type":"article","venue":"Journal of Plant Development","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Interactome; Arabidopsis thaliana; Protein–protein interaction; Arabidopsis; Systems biology; Signal transduction; Interaction network; Model organism","score_opus":0.06494129987983983,"score_gpt":0.31150539239029507,"score_spread":0.24656409251045525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7118080542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881982,0.0018467272,0.009097074,0.00008930913,0.0002251146,0.00038907034,0.000104136816,0.0000022767772,0.00004805493],"genre_scores_gemma":[0.980407,0.00022770629,0.018948592,0.000061852224,0.00005644706,0.000009321529,0.00006002415,0.000015863674,0.00021322217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99600255,0.00083594467,0.0018739909,0.00038300722,0.00059988647,0.0003046387],"domain_scores_gemma":[0.9954731,0.00032744408,0.0029303657,0.00037403675,0.00073673937,0.00015831886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001640284,0.00039562836,0.000820527,0.0004184186,0.00018424074,0.000059440557,0.0008955283,0.00022911205,0.000016749666],"category_scores_gemma":[0.0022469887,0.000235221,0.0002857397,0.0005964035,0.00026555703,0.000050798873,0.00031065405,0.00045239646,2.7849737e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054981356,0.00027298788,0.0070157377,0.00028298673,0.0015133336,0.000010377833,0.004647428,0.0016995944,0.98109305,0.0000053072686,0.00051585684,0.0023935323],"study_design_scores_gemma":[0.0005360119,0.00019269479,0.0005827507,0.0058823787,0.00023269688,0.00009089771,0.0073044877,0.0052550817,0.97876835,0.00002003941,0.00088025705,0.0002543715],"about_ca_topic_score_codex":0.00011805289,"about_ca_topic_score_gemma":0.000048964364,"teacher_disagreement_score":0.009851519,"about_ca_system_score_codex":0.00012915373,"about_ca_system_score_gemma":0.0018507243,"threshold_uncertainty_score":0.9592034},"labels":[],"label_agreement":null}]}