{"meta":{"query_hash":"4ec72a513c92","filters":{"venue":"LymphoSign Journal"},"cohort_total":155,"direct_labels_cover":0,"predictions_cover":155,"exported":155,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/4ec72a513c92","api":"https://metacan.xera.ac/api/v1/cohort?venue=LymphoSign+Journal"},"results":[{"id":"W1818178195","doi":"10.14785/lpsn-2014-0004","title":"A mutation in the <i>STAT1</i> DNA-binding domain associated with hemophagocytic lymphohistocytosis","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chronic mucocutaneous candidiasis; Hemophagocytic lymphohistiocytosis; STAT1; DNA-binding domain; Immunology; Mutation; Immune system; Biology; Transcription factor; Candida albicans; Immunodeficiency; Medicine; Gene; Genetics; Internal medicine; Disease","score_opus":0.013189249942625266,"score_gpt":0.2544324773521342,"score_spread":0.24124322740950893,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1818178195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896743,0.00029399502,0.0024666837,0.0011662816,0.000067337176,0.00034432954,0.0000013237756,0.000030969368,0.0059547215],"genre_scores_gemma":[0.9980657,0.000037612048,0.0002741115,0.0011647723,0.000094320894,0.000033233842,0.000015272126,0.00003313683,0.00028182848],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99772865,0.0003544089,0.0004584171,0.00018737641,0.00078132236,0.00048980914],"domain_scores_gemma":[0.9990203,0.0002560735,0.00023737697,0.0002393605,0.00012361414,0.00012327802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002126271,0.00018269599,0.00034857064,0.0002638109,0.0003452374,0.00011766534,0.00023531751,0.00009944912,0.000093914816],"category_scores_gemma":[0.00031907618,0.000113561706,0.00010684656,0.00056187593,0.00011929245,0.00020599009,0.000019744979,0.0003585615,0.000049307935],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012190172,0.0061244797,0.35924423,0.0007827954,0.0025492935,0.015444886,0.12256096,0.00097322743,0.21305026,0.0076294406,0.05029191,0.20915833],"study_design_scores_gemma":[0.18312153,0.016054362,0.55111635,0.00714939,0.0012664926,0.05350143,0.05081291,0.020845525,0.034568936,0.019175991,0.05873947,0.003647607],"about_ca_topic_score_codex":0.000022510254,"about_ca_topic_score_gemma":0.000015858614,"teacher_disagreement_score":0.20551072,"about_ca_system_score_codex":0.0009442745,"about_ca_system_score_gemma":0.00078840635,"threshold_uncertainty_score":0.4630912},"labels":[],"label_agreement":null},{"id":"W1948281086","doi":"10.14785/lpsn-2014-0003","title":"Pulmonary hemorrhage in a case of CD25 deficiency","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Diabetes and associated disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Autoantibody; Cytopenia; Immunology; Presentation (obstetrics); Surgery; Antibody","score_opus":0.003996252274940374,"score_gpt":0.211016370990097,"score_spread":0.20702011871515663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1948281086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921559,0.0011966041,0.0013900832,0.000054437784,0.00009708377,0.000038092257,0.0000035192004,0.0000025497525,0.005061697],"genre_scores_gemma":[0.9991944,0.00008160674,0.00041000763,0.00014912568,0.00007420783,0.0000020213658,0.000005389575,0.0000107996575,0.000072447074],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993004,0.00005875988,0.00021741878,0.0001261656,0.00007610616,0.00022110592],"domain_scores_gemma":[0.9996766,0.0000112248,0.000083470644,0.000121116114,0.000041282052,0.00006630619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003452711,0.000086715,0.00011694258,0.0000557269,0.000050928742,0.000015510888,0.000120508405,0.000082096565,0.000021244363],"category_scores_gemma":[0.00008122496,0.000079048026,0.00008244878,0.000101369566,0.00003427182,0.0000036279287,0.000033986744,0.00006607787,0.0000031441054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009717836,0.00061221555,0.0575379,0.000050873423,0.00003698611,0.0011552722,0.00016076564,0.00048211962,0.813766,0.0002642741,0.0014228183,0.12441357],"study_design_scores_gemma":[0.025053352,0.0069368463,0.056815937,0.00058149826,0.00034020678,0.109786466,0.00759106,0.02967238,0.71213555,0.016962072,0.030003224,0.0041214046],"about_ca_topic_score_codex":0.000034363162,"about_ca_topic_score_gemma":0.0000129916025,"teacher_disagreement_score":0.120292164,"about_ca_system_score_codex":0.000015289103,"about_ca_system_score_gemma":0.000058388014,"threshold_uncertainty_score":0.32234848},"labels":[],"label_agreement":null},{"id":"W1985401252","doi":"10.14785/lpsn-2014-0009","title":"Efficacy, safety, and tolerability of IVIG-SN in patients with primary immunodeficiency","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Tolerability; Medicine; Adverse effect; Primary immunodeficiency; Internal medicine; Clinical trial; Pharmacokinetics; Disease","score_opus":0.002529869334532964,"score_gpt":0.17202744451845073,"score_spread":0.16949757518391775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985401252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98795485,0.008387892,0.0011764843,0.0000612954,0.0002876953,0.00019345313,0.000005990087,0.00001646355,0.0019158529],"genre_scores_gemma":[0.99961126,0.00012484605,0.00006582925,0.00009579315,0.0000024265164,0.0000022169704,0.000022943817,0.000014619414,0.00006004899],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9983324,0.00026933188,0.0006519003,0.00024325757,0.00009092304,0.00041221827],"domain_scores_gemma":[0.9991364,0.00016801101,0.00029644364,0.00028488587,0.0001025856,0.000011691625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008646524,0.0002044699,0.0004736474,0.0001584712,0.00025074123,0.000020474876,0.00029503234,0.00014715226,0.000106137304],"category_scores_gemma":[0.00009308074,0.0001551977,0.00007481536,0.00021457381,0.00041705256,0.00016888368,0.000080099526,0.0003363786,0.000015905274],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008050501,0.004014929,0.522577,0.00011737012,0.00022601664,0.0000038350713,0.004327285,0.00040232146,0.052192047,0.0020923251,0.00008257594,0.4059138],"study_design_scores_gemma":[0.010208279,0.0007866136,0.9841735,0.00013165864,0.000026108752,0.000058964695,0.0001344812,0.000011269918,0.0012768911,0.00026452634,0.002694297,0.00023345342],"about_ca_topic_score_codex":0.00006439335,"about_ca_topic_score_gemma":0.0000011882905,"teacher_disagreement_score":0.46159646,"about_ca_system_score_codex":0.00007747369,"about_ca_system_score_gemma":0.00011479692,"threshold_uncertainty_score":0.6328779},"labels":[],"label_agreement":null},{"id":"W1987978125","doi":"10.14785/lpsn-2014-0016","title":"IPEX syndrome caused by a novel mutation in <i>FOXP3</i> gene can be cured by bone marrow transplantation from an unrelated donor after myeloablative conditioning","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; University of Toronto","keywords":"Immune dysregulation; Medicine; Primary immunodeficiency; Hematopoietic stem cell transplantation; Immunology; Enteropathy; FOXP3; Immunodeficiency; Transplantation; Autoimmunity; Immune system; Internal medicine; Disease","score_opus":0.00518806229189389,"score_gpt":0.2043275015287485,"score_spread":0.19913943923685462,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987978125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9720121,0.006777129,0.019409757,0.00041457344,0.00048017962,0.00021099254,0.00058794935,0.000049016104,0.00005827369],"genre_scores_gemma":[0.99494916,0.00016744439,0.00008787667,0.0007630402,0.000006782447,0.00003877198,0.0037921967,0.00003443543,0.00016030684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998026,0.00040049697,0.00063590036,0.0003513302,0.000094712814,0.00049154565],"domain_scores_gemma":[0.9992519,0.00013726148,0.00033597302,0.00016843475,0.00007706993,0.000029371713],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004249225,0.00028997057,0.0003771533,0.00018756602,0.00038756887,0.000075175594,0.0001960343,0.000338251,0.00042616943],"category_scores_gemma":[0.000030924675,0.00028954176,0.000093011426,0.00023541793,0.00016915263,0.00044782928,0.0000116483125,0.00046751866,0.000033982036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046731718,0.00030719425,0.00080504233,0.000007365731,0.00014932555,0.00005796799,0.006466204,0.0002668075,0.9895236,0.000026606154,0.00035326066,0.001569298],"study_design_scores_gemma":[0.06362777,0.002425237,0.13981451,0.00090210093,0.0008231837,0.0071974895,0.0053722104,0.0027393796,0.7645086,0.0024806526,0.00715962,0.0029492101],"about_ca_topic_score_codex":0.0011990138,"about_ca_topic_score_gemma":0.00006574341,"teacher_disagreement_score":0.22501498,"about_ca_system_score_codex":0.0001581528,"about_ca_system_score_gemma":0.000108832566,"threshold_uncertainty_score":0.99995565},"labels":[],"label_agreement":null},{"id":"W2001926938","doi":"10.14785/lpsn-2014-0025","title":"The history and evolution of immunoglobulin products and their clinical indications","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Diphtheria; Antibody; Immunology; Medicine; Gamma globulin; Immunity; Tetanus; Immune system; Vaccination","score_opus":0.025357766497030126,"score_gpt":0.24400892077491795,"score_spread":0.21865115427788784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001926938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.502,0.49454254,0.0008031572,0.00056775205,0.0016325501,0.00009820144,0.0000024112592,0.000012320021,0.00034109593],"genre_scores_gemma":[0.9972587,0.0021314071,0.000035042838,0.000045573124,0.000010651475,0.0000034827647,0.0000032689295,0.0000064568303,0.00050537655],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99894357,0.0002874409,0.00042191113,0.00012817456,0.00003217505,0.00018673926],"domain_scores_gemma":[0.99920034,0.00015694681,0.0002914423,0.0001885888,0.0001493205,0.000013365443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00153824,0.000098214,0.00017209242,0.000056233628,0.0003464651,0.000014089257,0.000188548,0.0001151251,0.000010092479],"category_scores_gemma":[0.00038602314,0.000060887356,0.000045602403,0.000074619755,0.0009089133,0.00009751996,0.00006086402,0.00025747338,0.0000130828275],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001668197,0.0011230194,0.052812815,0.000044538887,0.0010476124,0.0000049670125,0.022708308,0.000011102377,0.30141073,0.02817394,0.043251846,0.5477429],"study_design_scores_gemma":[0.008320341,0.00126071,0.32055727,0.00013356522,0.00014324758,0.0029656116,0.015958153,0.000060707218,0.0068647726,0.012010496,0.6312174,0.0005077275],"about_ca_topic_score_codex":0.000053899676,"about_ca_topic_score_gemma":6.7721055e-7,"teacher_disagreement_score":0.58796555,"about_ca_system_score_codex":0.00011320746,"about_ca_system_score_gemma":0.00051881257,"threshold_uncertainty_score":0.3348929},"labels":[],"label_agreement":null},{"id":"W2024137371","doi":"10.14785/lpsn-2014-0024","title":"Tandem mass spectrometric determination of purine metabolites and adenosine deaminase activity for newborn screening of ADA–SCID","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Newborn Screening Ontario; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Adenosine deaminase; Newborn screening; Severe combined immunodeficiency; Deoxycoformycin; Purine metabolism; Purine; Percentile; Pentostatin; Adenosine deaminase deficiency; Deoxyadenosine; Medicine; Chemistry; Adenosine; Internal medicine; Enzyme; Biochemistry","score_opus":0.024945756612155964,"score_gpt":0.2546028136692536,"score_spread":0.2296570570570976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024137371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67361975,0.07253465,0.25306442,0.000083431536,0.0003104194,0.00019307206,0.00002152559,0.000013113755,0.00015961046],"genre_scores_gemma":[0.9928947,0.00030501408,0.0065671983,0.000010332628,0.000011001157,0.0000060425873,0.000010637092,0.000013381431,0.00018165806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989488,0.00012285166,0.00039765597,0.00015390485,0.000078139004,0.00029861627],"domain_scores_gemma":[0.99893457,0.0001858683,0.00047676725,0.00013547768,0.00024744417,0.000019889463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083408115,0.00015392476,0.00039714284,0.00039140094,0.000151067,0.00001702394,0.00018574615,0.00012679938,0.000030985393],"category_scores_gemma":[0.00034772314,0.00013406244,0.000116747186,0.0003578434,0.00017794616,0.0002355934,0.000040231924,0.00014481499,0.0000015528241],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044601795,0.0001739576,0.0018205607,0.00002936066,0.00009886295,0.000002274996,0.00046060365,0.0000120576005,0.79647493,0.00020134344,0.00007333664,0.20020667],"study_design_scores_gemma":[0.0073123705,0.0011656719,0.023751376,0.00011004188,0.00020853354,0.00043560585,0.0009043274,0.0003292163,0.95743376,0.0021460406,0.0059521915,0.00025086466],"about_ca_topic_score_codex":0.00003649581,"about_ca_topic_score_gemma":6.920468e-7,"teacher_disagreement_score":0.31927496,"about_ca_system_score_codex":0.000037324502,"about_ca_system_score_gemma":0.00012795698,"threshold_uncertainty_score":0.54669076},"labels":[],"label_agreement":null},{"id":"W2048807985","doi":"10.14785/lpsn-2014-0017","title":"Self-reactive and transplacental-acquired maternal T cells in SCID patients—time to update","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Jeffrey Modell Foundation","keywords":"Transplacental; Severe combined immunodeficiency; Immunology; T cell; Medicine; Phenotype; Biology; Fetus; Pregnancy; Immune system; Genetics","score_opus":0.0019014882967579437,"score_gpt":0.16952575536502726,"score_spread":0.16762426706826933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048807985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957751,0.0016117631,0.0006373353,0.00017355004,0.00061054854,0.00019565466,0.000013684077,0.000037327518,0.00094501476],"genre_scores_gemma":[0.99898064,0.00009842669,0.000168107,0.00043246621,0.0000075200774,0.0000069101347,0.00001558547,0.000020820135,0.0002695342],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985568,0.00022233913,0.00041332695,0.00024693183,0.000061005634,0.00049963105],"domain_scores_gemma":[0.9995977,0.00004787027,0.00013978315,0.00013977001,0.00004753784,0.000027285067],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044729523,0.0002142415,0.00028602988,0.00019878555,0.00026940493,0.000058440757,0.00025882115,0.0001439078,0.0006186266],"category_scores_gemma":[0.00001560994,0.0001903486,0.000072267125,0.00014278373,0.000098361226,0.00020677104,0.000046614085,0.00017858784,0.0012539446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012883156,0.00084342627,0.012771794,0.00003139765,0.00020398003,0.000016632239,0.004471602,0.00007197734,0.9310179,0.0002638493,0.0007913158,0.048227854],"study_design_scores_gemma":[0.026189098,0.0017716038,0.18762018,0.0004318474,0.00017368083,0.00093149877,0.00071091164,0.00031960447,0.5849613,0.0010067328,0.19430098,0.0015825513],"about_ca_topic_score_codex":0.00003933338,"about_ca_topic_score_gemma":0.000001027938,"teacher_disagreement_score":0.34605655,"about_ca_system_score_codex":0.00009307114,"about_ca_system_score_gemma":0.00004694004,"threshold_uncertainty_score":0.9995237},"labels":[],"label_agreement":null},{"id":"W2049556073","doi":"10.14785/lpsn-2014-0012","title":"Human congenital T-cell receptor disorders","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Ankara Universitesi","keywords":"Autoimmunity; T-cell receptor; Immunopathology; Immunology; T cell; Medicine; Biology; Immune system","score_opus":0.004739721376431425,"score_gpt":0.20135389975908083,"score_spread":0.1966141783826494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049556073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9398033,0.019865394,0.004395376,0.0003862242,0.0033723474,0.0001720246,0.000007802471,0.00013095514,0.031866573],"genre_scores_gemma":[0.99510926,0.000116236304,0.000053501037,0.00028967985,0.000026060747,0.0000069273624,0.000029119452,0.000028839042,0.004340397],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985118,0.00023787562,0.00040448783,0.00022612255,0.000061029987,0.00055871054],"domain_scores_gemma":[0.9994098,0.000059197595,0.00020399917,0.00025231103,0.000056268593,0.000018426872],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005039774,0.00022810236,0.00025563975,0.00012766666,0.0009565943,0.00006542918,0.00045568566,0.00020460885,0.002166667],"category_scores_gemma":[0.000046300545,0.00020030454,0.00020870136,0.00012890271,0.0002623792,0.00016354589,0.000054168522,0.00041617488,0.0016875031],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058212707,0.00034413426,0.00076251314,0.000007976685,0.000107613174,0.000001375056,0.0010057973,0.000016247079,0.9449823,0.0020618136,0.010456658,0.040195376],"study_design_scores_gemma":[0.010093798,0.0010481039,0.0045423214,0.00005704253,0.0001112275,0.0004698387,0.0018988727,0.000027520946,0.09732257,0.0064626196,0.8769559,0.0010101359],"about_ca_topic_score_codex":0.00005692444,"about_ca_topic_score_gemma":0.0000022716986,"teacher_disagreement_score":0.8664993,"about_ca_system_score_codex":0.000050533414,"about_ca_system_score_gemma":0.00006723788,"threshold_uncertainty_score":0.9990898},"labels":[],"label_agreement":null},{"id":"W2051135789","doi":"10.14785/lpsn-2014-0013","title":"Cardiovascular abnormalities in primary immunodeficiency diseases","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Primary immunodeficiency; Immunology; Immunodeficiency; Chronic mucocutaneous candidiasis; Medicine; Common variable immunodeficiency; Immune system; Immune dysregulation; Chronic granulomatous disease; Disease; Pathology; Antibody","score_opus":0.013043600691856684,"score_gpt":0.20355972149600116,"score_spread":0.19051612080414448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051135789","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4221109,0.56608564,0.0011139375,0.000106081374,0.0020567449,0.00015207242,0.000012142083,0.00007249496,0.008289988],"genre_scores_gemma":[0.99800515,0.00091187394,0.000031671156,0.00024340057,0.000015202779,0.000015485277,0.000038916696,0.00002316657,0.0007151056],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980231,0.00034519602,0.0005540292,0.0002500247,0.0001531414,0.00067450374],"domain_scores_gemma":[0.99924606,0.00005981777,0.00013586637,0.00039570636,0.00013676513,0.000025794878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010563853,0.00024689516,0.0004766725,0.00027020837,0.00029941395,0.00007249176,0.00051846856,0.00016716566,0.00015611116],"category_scores_gemma":[0.00013435823,0.0002142074,0.0003845391,0.00031153896,0.00027242966,0.00040113452,0.000100630044,0.00039589993,0.00034237356],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004423014,0.0067376057,0.117176615,0.00032018908,0.004723981,0.0017537973,0.04554404,0.016446205,0.11112359,0.0118705295,0.026653225,0.6532272],"study_design_scores_gemma":[0.042141955,0.0014233562,0.2222703,0.00067039445,0.0007201798,0.014707589,0.042014476,0.00009597316,0.010384041,0.013435,0.6488123,0.0033244276],"about_ca_topic_score_codex":0.00031856366,"about_ca_topic_score_gemma":6.844282e-7,"teacher_disagreement_score":0.64990276,"about_ca_system_score_codex":0.00033278187,"about_ca_system_score_gemma":0.0006330423,"threshold_uncertainty_score":0.87351245},"labels":[],"label_agreement":null},{"id":"W2051222858","doi":"10.14785/lpsn-2014-0022","title":"Monocytosis in a patient with a novel <i>GATA2</i> mutation","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Hospital for Sick Children; University of Toronto","keywords":"Monocytosis; Medicine; GATA2; Immunology; Myeloid; Eosinophilia; Mutation; Haematopoiesis; Biology; Bone marrow; Stem cell; Genetics","score_opus":0.005789991782217776,"score_gpt":0.1891635608360571,"score_spread":0.1833735690538393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051222858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96525395,0.0053061005,0.026823096,0.00023566488,0.0004463075,0.0001380987,0.0000047994577,0.00003268168,0.0017593115],"genre_scores_gemma":[0.999177,0.000039752493,0.0002103578,0.00044378344,0.000004482022,0.0000141369155,0.000014708528,0.000015004314,0.00008078917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898,0.00010717551,0.0003267996,0.00017217018,0.00005278926,0.00036105336],"domain_scores_gemma":[0.99954104,0.00006610801,0.00017714218,0.00015427641,0.000052341824,0.000009116343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030266962,0.00015294366,0.00020135984,0.00015915447,0.00022953405,0.000036190515,0.00017893898,0.00010741905,0.0000976355],"category_scores_gemma":[0.000042117477,0.00011720376,0.00006110919,0.00021059476,0.00009668932,0.00016225998,0.000024113075,0.0002606505,0.00007894523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013458742,0.001307905,0.002195919,0.000022441896,0.00021414709,0.00008454363,0.01161733,0.0025549857,0.61568475,0.0024664993,0.0007267921,0.3617788],"study_design_scores_gemma":[0.07835664,0.009587108,0.05729225,0.0016938996,0.0003570127,0.051701736,0.02243714,0.0029683944,0.45864296,0.0052779606,0.3080014,0.0036835],"about_ca_topic_score_codex":0.00013348517,"about_ca_topic_score_gemma":0.000007177412,"teacher_disagreement_score":0.3580953,"about_ca_system_score_codex":0.00007367578,"about_ca_system_score_gemma":0.00008678693,"threshold_uncertainty_score":0.47794306},"labels":[],"label_agreement":null},{"id":"W2059081744","doi":"10.14785/lpsn-2014-0019","title":"Immunodeficiencies with hypergammaglobulinemia: a review","year":2014,"lang":"en","type":"review","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Immunology; Autoimmunity; Hypergammaglobulinemia; Medicine; Malignancy; Primary immunodeficiency; Immune dysregulation; Immunodeficiency; Common variable immunodeficiency; Antibody; Immune system; Pathology","score_opus":0.016559960850261277,"score_gpt":0.2735341938732146,"score_spread":0.2569742330229533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059081744","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000010797368,0.99360114,0.0011012646,0.000077063574,0.0015413332,0.0006654301,0.00002104784,0.0001134699,0.0028781523],"genre_scores_gemma":[0.000009140742,0.99663675,0.00008601352,0.0005250628,0.00003714828,0.000088373345,0.00018230356,0.0001173068,0.002317876],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958139,0.0007099178,0.0016317602,0.0006031568,0.00017495685,0.0010663157],"domain_scores_gemma":[0.9970784,0.0002781012,0.0015053725,0.00089398737,0.00021773772,0.000026404892],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013868018,0.0010087363,0.0036396268,0.00033157508,0.0008566969,0.000114101305,0.0015195555,0.00071268115,0.0010775749],"category_scores_gemma":[0.00017690095,0.0006264599,0.0011964604,0.00071617874,0.00051264657,0.0001666401,0.00015173687,0.0017423921,0.0023893083],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000019692094,0.000112565765,3.2627426e-7,0.013484185,0.00048197925,0.000035060162,0.000051634794,9.2404616e-7,0.000019143454,0.0001451113,0.008046806,0.9776026],"study_design_scores_gemma":[0.0007615904,0.0002601875,5.722087e-7,0.089078255,0.0018333545,0.018130448,0.00004636,1.8395949e-7,0.000005442845,0.000018671533,0.88911575,0.00074917235],"about_ca_topic_score_codex":0.000019080706,"about_ca_topic_score_gemma":3.7498296e-7,"teacher_disagreement_score":0.9768534,"about_ca_system_score_codex":0.00023387208,"about_ca_system_score_gemma":0.0013544273,"threshold_uncertainty_score":0.99983555},"labels":[],"label_agreement":null},{"id":"W2059347852","doi":"10.14785/lpsn-2015-0005","title":"RelB deficiency causes combined immunodeficiency","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"George & Fay Yee Centre for Healthcare Innovation; University of Manitoba; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Ontario Ministry of Research and Innovation; Hospital for Sick Children; Genome Canada; Ontario Genomics; Ontario Genomics Institute; Immunodeficiency Canada; Jeffrey Modell Foundation","keywords":"RELB; Biology; Immunodeficiency; Signal transduction; LYN; Immunology; Immune system; Primary immunodeficiency; Haploinsufficiency; CIITA; Genetics; Gene; Transcription factor; Phenotype; T cell; NFKB1; Tyrosine kinase","score_opus":0.02556741745147416,"score_gpt":0.2505067470077992,"score_spread":0.224939329556325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059347852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9722045,0.006842303,0.014850368,0.0001691513,0.0010587058,0.000116412775,0.000007896392,0.000036710746,0.0047139325],"genre_scores_gemma":[0.9970488,0.00016242015,0.0015578164,0.0003878476,0.00033456684,0.000006021652,0.000017221384,0.000037449856,0.00044784005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984321,0.000101966754,0.00036207112,0.00028701173,0.0003688179,0.00044802512],"domain_scores_gemma":[0.99886656,0.000012737933,0.00018732411,0.0003852196,0.00027866458,0.0002694763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007323947,0.00020555384,0.00017594415,0.000082714396,0.00021780896,0.000106382155,0.0004616183,0.00014689591,0.000032498287],"category_scores_gemma":[0.0002556962,0.0001815654,0.00013035747,0.00016687148,0.00010679864,0.000009867497,0.00011305444,0.00015481796,0.00008239022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000215103,0.0002162643,0.0038845302,0.000006951336,0.000037249974,0.00006766808,0.00034101174,0.0003707469,0.9720129,0.0005891345,0.020914093,0.0013443988],"study_design_scores_gemma":[0.0075184447,0.004183503,0.0020580199,0.00010125227,0.000101877886,0.0053425105,0.001083334,0.0002832595,0.91737735,0.0055727875,0.055127144,0.0012505314],"about_ca_topic_score_codex":0.000019257697,"about_ca_topic_score_gemma":0.00000268915,"teacher_disagreement_score":0.054635514,"about_ca_system_score_codex":0.00008459528,"about_ca_system_score_gemma":0.0006004821,"threshold_uncertainty_score":0.74040216},"labels":[],"label_agreement":null},{"id":"W2115164264","doi":"10.14785/lpsn-2014-0006","title":"Transient hypogammaglobulinemia of infancy","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Hypogammaglobulinemia; Etiology; Pathogenesis; Medicine; Immunology; Pediatrics; Pathology; Antibody","score_opus":0.005074625595236905,"score_gpt":0.20043132191786142,"score_spread":0.1953566963226245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115164264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92146266,0.034752812,0.025208173,0.0003667913,0.0025186276,0.00013433465,0.000007381293,0.000057619032,0.015491613],"genre_scores_gemma":[0.9990228,0.00017789991,0.00012362617,0.00017002558,0.000011071475,0.0000022772876,0.000008072792,0.0000117716645,0.00047250115],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99889547,0.0001376894,0.0004563253,0.00012907537,0.000052439063,0.00032901907],"domain_scores_gemma":[0.9994125,0.000074508054,0.00021409776,0.00020024776,0.000088787725,0.000009866016],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047955863,0.00014048054,0.00026480053,0.0001098714,0.0002084782,0.000012646489,0.0003089905,0.0001383363,0.00063248334],"category_scores_gemma":[0.000077522825,0.00011618625,0.00017415674,0.00013834272,0.00018042978,0.00008950221,0.000021778747,0.00023743545,0.00016831793],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002851634,0.00035842726,0.002420917,0.000029058863,0.0001787539,0.000004496519,0.0021729765,0.00019895505,0.770147,0.0044971313,0.0036649378,0.21604218],"study_design_scores_gemma":[0.01084153,0.00093142234,0.040781856,0.00024620007,0.00015913403,0.002076031,0.0010912339,0.00014090241,0.30912143,0.0039605717,0.6299441,0.0007055724],"about_ca_topic_score_codex":0.00001964989,"about_ca_topic_score_gemma":3.3512052e-7,"teacher_disagreement_score":0.6262792,"about_ca_system_score_codex":0.000012804948,"about_ca_system_score_gemma":0.00008827251,"threshold_uncertainty_score":0.6925249},"labels":[],"label_agreement":null},{"id":"W2126266157","doi":"10.14785/lpsn-2014-0023","title":"Novel <i>DOCK8</i> Mutation","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Janeway Children's Health and Rehabilitation Centre","funders":"","keywords":"Immunology; Primary immunodeficiency; Medicine; Eosinophilia; Molluscum contagiosum; Immune system; Mutation; Biology; Genetics","score_opus":0.006708347364553671,"score_gpt":0.2034612731538677,"score_spread":0.19675292578931403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126266157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4844999,0.03274705,0.44963753,0.001174293,0.007436155,0.00024477846,0.000010045203,0.00023844607,0.024011796],"genre_scores_gemma":[0.99788606,0.000056038414,0.00021764357,0.00067953044,0.000020136227,0.000004051108,0.000018565514,0.000015347983,0.0011026479],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99905044,0.00009711253,0.00030135034,0.000146966,0.00004620175,0.00035790223],"domain_scores_gemma":[0.9995105,0.00008216808,0.00016378552,0.0001632347,0.00007103173,0.000009267241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049587263,0.00013887048,0.00017051582,0.00008802107,0.0004939117,0.000047055793,0.00025827315,0.00012955962,0.00044297404],"category_scores_gemma":[0.000102108046,0.00011837653,0.00011541914,0.00012088124,0.00011119079,0.00015731376,0.00002688974,0.0002516766,0.0007627893],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007152167,0.00018478668,0.00010897598,0.000005003165,0.00007224555,0.0000032834341,0.0010277432,0.0001269187,0.86914134,0.003948497,0.0023089608,0.12300072],"study_design_scores_gemma":[0.011711519,0.00064625544,0.008495785,0.00012119455,0.00011458491,0.010616573,0.0015291633,0.00039478275,0.17454942,0.0052898377,0.7857023,0.00082862325],"about_ca_topic_score_codex":0.000035654655,"about_ca_topic_score_gemma":4.9815e-7,"teacher_disagreement_score":0.7833933,"about_ca_system_score_codex":0.000038522237,"about_ca_system_score_gemma":0.000066384346,"threshold_uncertainty_score":0.98043674},"labels":[],"label_agreement":null},{"id":"W2134178181","doi":"10.14785/lpsn-2014-0014","title":"Host–microbe interactions in the gut: lessons learned from models of inflammatory bowel diseases","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Inflammatory bowel disease; Gut flora; Disease; Immune system; Biology; Pathogenesis; Immunology; Innate immune system; Host (biology); Acquired immune system; Medicine; Genetics; Pathology","score_opus":0.02862767899625285,"score_gpt":0.2910053728951926,"score_spread":0.2623776938989398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134178181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889,0.0011443659,0.007426034,0.0017370523,0.00021235978,0.00009096303,0.000048138456,0.0000044836434,0.00043661718],"genre_scores_gemma":[0.9977372,0.00075940264,0.0003214903,0.00075956003,0.00030985806,0.0000050777035,0.00003216174,0.000014435284,0.000060783528],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990372,0.0001925741,0.0002957553,0.00016708669,0.000094872674,0.00021249025],"domain_scores_gemma":[0.99937314,0.000041846302,0.000173858,0.00026976658,0.000059827747,0.00008159012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026216902,0.00011604851,0.00013697553,0.000060601076,0.00012347274,0.000040108083,0.00030096582,0.00006613996,0.000030211222],"category_scores_gemma":[0.00004503054,0.000086950604,0.00011372026,0.000054482676,0.000062668,0.000011089549,0.000053374493,0.00016210222,0.0000065852337],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103834696,0.000106949774,0.005231051,0.000011949906,0.000035609093,0.0000042784163,0.00048416236,0.00034734452,0.98578733,0.0004103328,0.0053875023,0.0020896653],"study_design_scores_gemma":[0.01129206,0.00114488,0.5774267,0.00082175445,0.00034820888,0.0010445355,0.0038495744,0.0055479496,0.19055964,0.036346998,0.17000534,0.0016124139],"about_ca_topic_score_codex":0.00010258994,"about_ca_topic_score_gemma":0.00011565555,"teacher_disagreement_score":0.79522765,"about_ca_system_score_codex":0.000029425953,"about_ca_system_score_gemma":0.00018276219,"threshold_uncertainty_score":0.3545743},"labels":[],"label_agreement":null},{"id":"W2167200968","doi":"10.14785/lpsn-2015-0002","title":"A prospective outcome study of patients with profound combined immunodeficiency (P-CID)","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Prospective cohort study; Hematopoietic stem cell transplantation; Quality of life (healthcare); Internal medicine; Primary immunodeficiency; Pediatrics; Transplantation; Immunodeficiency; Observational study; Cohort study; Immune system; Immunology; Disease","score_opus":0.015336138146908566,"score_gpt":0.23551473195182782,"score_spread":0.22017859380491925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167200968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929143,0.0037806977,0.0003287972,0.000027556132,0.00092210335,0.0008200429,0.000007892233,0.00004647468,0.0011521115],"genre_scores_gemma":[0.99943817,0.000005488327,0.000034298537,0.000038069014,0.0000037937543,0.000028981874,0.000016386288,0.000029176788,0.00040561007],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9979456,0.0002463315,0.00079479505,0.00028787742,0.00021153875,0.0005138687],"domain_scores_gemma":[0.9983659,0.000052510506,0.00056589645,0.00038254555,0.0006105098,0.000022661388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067401846,0.00029394662,0.00052788894,0.0002124901,0.0004063427,0.000047211564,0.00052242086,0.00012801946,0.00010893782],"category_scores_gemma":[0.00011738284,0.00020673595,0.00010070002,0.00041195803,0.0002694116,0.00028511597,0.000096168435,0.00041036308,0.000088745925],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036112377,0.00875037,0.96544725,0.000013461384,0.00048417936,0.000013465644,0.015588198,0.00008942052,0.0024921077,0.0003867854,0.00018584671,0.002937708],"study_design_scores_gemma":[0.045581598,0.012950318,0.9141305,0.000067337714,0.00021548594,0.00014838966,0.022929918,0.000007505013,0.0016461329,0.0006804391,0.0010463524,0.0005960151],"about_ca_topic_score_codex":0.00013722513,"about_ca_topic_score_gemma":0.0000030005265,"teacher_disagreement_score":0.051316712,"about_ca_system_score_codex":0.00016436898,"about_ca_system_score_gemma":0.00029303928,"threshold_uncertainty_score":0.8430447},"labels":[],"label_agreement":null},{"id":"W2168740984","doi":"10.14785/lpsn-2014-0015","title":"Atypical presentation and manifestations in X-linked agammaglobulinemia patients with novel<i>BTK</i>mutations","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"X-linked agammaglobulinemia; Bruton's tyrosine kinase; Medicine; Immunology; Immunodeficiency; Immune system; Tyrosine kinase; Internal medicine","score_opus":0.004920267461630536,"score_gpt":0.20271383950522462,"score_spread":0.19779357204359407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168740984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816067,0.00094925147,0.016280264,0.00024928089,0.0002800386,0.0001767635,0.000011566596,0.000024090728,0.00042204402],"genre_scores_gemma":[0.9990811,0.000034450382,0.000425973,0.00015605391,0.000007134633,0.000012355474,0.0001216225,0.000013438956,0.00014789862],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9990229,0.00011660299,0.00033718022,0.00017687843,0.0000605205,0.00028588893],"domain_scores_gemma":[0.999476,0.00013945956,0.00015287107,0.0001121209,0.000105196494,0.000014336128],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021868122,0.00014064455,0.00015727563,0.00015124817,0.0003386693,0.00004651861,0.00012744231,0.00011107262,0.000087391876],"category_scores_gemma":[0.00009794468,0.0001152012,0.00003481291,0.00016420038,0.0001750279,0.00022231312,0.00002323188,0.00026034113,0.0000338535],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002201142,0.0025834588,0.8072979,0.000056260717,0.00030942625,0.000021286098,0.0080901645,0.0027836699,0.07559322,0.010597034,0.0007668542,0.089699574],"study_design_scores_gemma":[0.0076940935,0.00019987194,0.98724276,0.000062385545,0.00003832367,0.00022553597,0.00046923454,0.00023291988,0.0003450622,0.0007991725,0.002489228,0.00020141178],"about_ca_topic_score_codex":0.000031709824,"about_ca_topic_score_gemma":0.0000070570527,"teacher_disagreement_score":0.17994484,"about_ca_system_score_codex":0.00004409338,"about_ca_system_score_gemma":0.000074925294,"threshold_uncertainty_score":0.46977684},"labels":[],"label_agreement":null},{"id":"W2174123252","doi":"10.14785/lpsn-2014-0021","title":"Clinical manifestations associated with novel mutations in the coiled-coil domain of STAT1","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mutation; Immune system; Coiled coil; Biology; Medicine; Genetics; Gene; Cell biology","score_opus":0.015509375869792013,"score_gpt":0.26286767092826124,"score_spread":0.24735829505846924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2174123252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9790585,0.0013567948,0.016298953,0.00041419273,0.000382493,0.0001653895,0.00002860556,0.000015426287,0.0022796371],"genre_scores_gemma":[0.9992628,0.00003808274,0.00014847603,0.00030246645,0.0000059727995,0.000015100003,0.00005198696,0.000010800172,0.0001642768],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982191,0.00062268216,0.00062896486,0.00013418146,0.00007776818,0.00031731097],"domain_scores_gemma":[0.9983721,0.00091746304,0.00040409275,0.00018717938,0.00011139819,0.000007802352],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022759787,0.00012384044,0.00024633706,0.00011062926,0.0003395016,0.000024975532,0.00034581436,0.00013048615,0.00007973594],"category_scores_gemma":[0.00035154057,0.00008010233,0.00010492184,0.00027340683,0.0003967922,0.00010403798,0.000016662685,0.0004188752,0.000020091205],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002949144,0.023418011,0.26943517,0.000094357085,0.0037454152,0.00022550391,0.12954634,0.0068485355,0.19892877,0.13785197,0.005661447,0.22129531],"study_design_scores_gemma":[0.016197158,0.0011942401,0.94384354,0.00025942142,0.0001923319,0.0015944226,0.015146439,0.00014982211,0.0007674358,0.0077680466,0.012438529,0.00044862292],"about_ca_topic_score_codex":0.000056265497,"about_ca_topic_score_gemma":0.00003070244,"teacher_disagreement_score":0.6744084,"about_ca_system_score_codex":0.000046279885,"about_ca_system_score_gemma":0.0002561169,"threshold_uncertainty_score":0.32664782},"labels":[],"label_agreement":null},{"id":"W2181975523","doi":"10.14785/lpsn-2015-0009","title":"Cartilage–hair hypoplasia: a spectrum of clinical and radiological findings","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Short stature; Disease; Dysplasia; Common variable immunodeficiency; Hypoplasia; Cohort; Immunodeficiency; Radiological weapon; Pediatrics; Immune system; Internal medicine; Immunology; Surgery; Antibody","score_opus":0.03912451744684358,"score_gpt":0.28642173675827715,"score_spread":0.24729721931143356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2181975523","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9630432,0.032884825,0.0006522437,0.00040058134,0.0014824994,0.00008504702,0.00000610872,0.000028776798,0.0014167241],"genre_scores_gemma":[0.9988726,0.00045618293,0.000100449506,0.00015262715,0.000022981156,0.0000022126185,0.000005299039,0.000010949318,0.00037674585],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99820316,0.0003273605,0.0007856,0.0002195306,0.0000652241,0.00039913805],"domain_scores_gemma":[0.9993054,0.00017358967,0.00024169892,0.00017329708,0.000068292844,0.00003766927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016050279,0.00017252757,0.0005288134,0.000101382444,0.00019075866,0.000022376205,0.00027129467,0.00031394436,0.00015421268],"category_scores_gemma":[0.0004195873,0.00012996288,0.00018514806,0.00012708436,0.00070873485,0.00011970872,0.000083820785,0.00047441584,0.00008837016],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006743633,0.0025891778,0.341246,0.00007103022,0.0012284019,0.00044864803,0.014169567,0.0001301963,0.46387643,0.017046375,0.0511019,0.10134865],"study_design_scores_gemma":[0.06042004,0.010480649,0.3027898,0.00045739757,0.00064863084,0.043667372,0.018597461,0.00016940128,0.18709922,0.0383088,0.33496535,0.0023958806],"about_ca_topic_score_codex":0.000017897017,"about_ca_topic_score_gemma":7.617952e-7,"teacher_disagreement_score":0.28386343,"about_ca_system_score_codex":0.000024275272,"about_ca_system_score_gemma":0.00023491282,"threshold_uncertainty_score":0.5299732},"labels":[],"label_agreement":null},{"id":"W2184742797","doi":"10.14785/lpsn-2015-0011","title":"Isolation protocol for patients with severe combined immune deficiency","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Isolation (microbiology); Medicine; Hematopoietic stem cell transplantation; Severe combined immunodeficiency; Pediatrics; Population; Treatment protocol; Immune system; Immunodeficiency; Protocol (science); Intensive care medicine; Transplantation; Immunology; Internal medicine; Bioinformatics; Biology; Pathology","score_opus":0.013923825374740122,"score_gpt":0.2425752736894812,"score_spread":0.22865144831474107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2184742797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.527398,0.005960606,0.13398361,0.0010444587,0.005906065,0.31043854,0.000099905345,0.0005942607,0.014574548],"genre_scores_gemma":[0.97665614,0.0000017842705,0.0006029679,0.00012765259,0.000011782709,0.021692364,0.00008695365,0.000038378803,0.00078198855],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998687,0.0001063013,0.0004487549,0.00020283916,0.00008102262,0.00047405867],"domain_scores_gemma":[0.99893486,0.000057669116,0.00034418268,0.00020734018,0.0004352583,0.000020674008],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004512058,0.00021773473,0.00025291173,0.00011341219,0.0005375115,0.000061705454,0.00031196163,0.00015582821,0.00013319061],"category_scores_gemma":[0.00009894359,0.00015786245,0.00010656536,0.00017909272,0.00012452072,0.0003026983,0.000035343535,0.00020960366,0.00010139681],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.11539487,0.02697358,0.23485558,0.00063240284,0.0021235335,0.000029814977,0.028223688,0.003488463,0.18159507,0.017509926,0.07901533,0.31015775],"study_design_scores_gemma":[0.35538813,0.035304178,0.12989967,0.0010298559,0.00042577225,0.0020002276,0.006585151,0.00056731916,0.02336092,0.015702747,0.4256596,0.0040764264],"about_ca_topic_score_codex":0.000013550796,"about_ca_topic_score_gemma":3.4867355e-7,"teacher_disagreement_score":0.44925812,"about_ca_system_score_codex":0.000117183015,"about_ca_system_score_gemma":0.0003402849,"threshold_uncertainty_score":0.6437444},"labels":[],"label_agreement":null},{"id":"W2189356888","doi":"10.14785/lpsn-2014-0002","title":"Mutations in tetratricopeptide repeat domain 7A (<i>TTC7A</i>) are associated with combined immunodeficiency with dendriform lung ossification but no intestinal atresia","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Immunodeficiency Canada","keywords":"Immunodeficiency; Primary immunodeficiency; Pathology; Lung; Biology; Immunology; Severe combined immunodeficiency; Medicine; Immune system; Gene; Internal medicine; Genetics","score_opus":0.005125928994381354,"score_gpt":0.19345514100838343,"score_spread":0.18832921201400207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2189356888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9759108,0.00544789,0.013864696,0.00025359078,0.00039289295,0.00039228334,0.000012937157,0.0001202804,0.003604629],"genre_scores_gemma":[0.9983386,0.000060797272,0.00038791768,0.00016514791,0.000012165789,0.00004158339,0.00013871778,0.000046410278,0.0008087042],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973321,0.00044767707,0.0008011527,0.0004362175,0.00016304485,0.0008198187],"domain_scores_gemma":[0.99803054,0.00032115955,0.00081314123,0.0004182768,0.00038752356,0.000029326071],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010573958,0.00040817732,0.000501516,0.00040517867,0.0010029618,0.000147157,0.00055197504,0.0002422962,0.00015710985],"category_scores_gemma":[0.00036509815,0.0003085983,0.0001229581,0.00085367425,0.00042655715,0.0004101622,0.0000439464,0.000789853,0.0001455672],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00699432,0.0052098897,0.39106828,0.00013028077,0.0011497351,0.00033099085,0.010495869,0.0046454924,0.5546536,0.004451918,0.0027463727,0.018123241],"study_design_scores_gemma":[0.044614237,0.005617019,0.8921329,0.0034022734,0.0005896956,0.009521875,0.01582505,0.0025362715,0.016665515,0.0022348948,0.0038447431,0.0030155263],"about_ca_topic_score_codex":0.00018721343,"about_ca_topic_score_gemma":0.000051308874,"teacher_disagreement_score":0.53798807,"about_ca_system_score_codex":0.00038746878,"about_ca_system_score_gemma":0.0003717323,"threshold_uncertainty_score":0.99993664},"labels":[],"label_agreement":null},{"id":"W2190742461","doi":"10.14785/lpsn-2014-0020","title":"Imaging in patients with chronic granulomatous disease","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chronic granulomatous disease; Primary immunodeficiency; Inflammation; Medicine; Nicotinamide adenine dinucleotide phosphate; Granulomatous inflammation; Pathology; Spleen; Magnetic resonance imaging; Disease; Constitutional symptoms; Severe combined immunodeficiency; Immunodeficiency; Haematopoiesis; NADPH oxidase; Hematopoietic stem cell transplantation; Stem cell; Immunology; Oxidase test; Radiology; Internal medicine; Biology; Immune system","score_opus":0.0029902250641380746,"score_gpt":0.17763106443340546,"score_spread":0.1746408393692674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2190742461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99227303,0.001131829,0.005533218,0.00018990504,0.00046565325,0.00015662983,0.000006808067,0.00003372102,0.00020922035],"genre_scores_gemma":[0.9992476,0.000026694774,0.0001046102,0.00039148855,0.0000760403,0.000008618011,0.000025048828,0.000024957213,0.00009495543],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99883765,0.000196139,0.00024458382,0.00022065273,0.00006317114,0.00043782432],"domain_scores_gemma":[0.99949986,0.000038184593,0.00012508013,0.00019047289,0.000069884365,0.00007652707],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021153993,0.00018810281,0.00021194278,0.0001657538,0.00021107863,0.000037855687,0.00021392,0.000048280166,0.00030697777],"category_scores_gemma":[0.000022393899,0.00013598113,0.00005912701,0.00011760263,0.00009267891,0.00018538111,0.000038245093,0.00022746342,0.00024302736],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019473966,0.00071003917,0.7840667,0.00003395557,0.00013683521,0.00019016318,0.00034633794,0.00007746477,0.12065692,0.004448704,0.0027440593,0.084641434],"study_design_scores_gemma":[0.022985715,0.0010208281,0.9120533,0.00041462618,0.00009555339,0.00028475883,0.000052375814,0.000047381265,0.04347117,0.004482733,0.014325318,0.0007662331],"about_ca_topic_score_codex":0.000012048593,"about_ca_topic_score_gemma":0.0000061007117,"teacher_disagreement_score":0.12798661,"about_ca_system_score_codex":0.0001631346,"about_ca_system_score_gemma":0.0001191169,"threshold_uncertainty_score":0.55451494},"labels":[],"label_agreement":null},{"id":"W2192019351","doi":"10.14785/lpsn-2014-0018","title":"Hematopoietic stem cell transplantation completely reversed colitis but not arthritis in IL-10Rα deficiency","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Hematopoietic stem cell transplantation; Medicine; Colitis; Immunology; Arthritis; Ulcerative colitis; Transplantation; Immunodeficiency; Immune system; Internal medicine; Disease","score_opus":0.009950358671554521,"score_gpt":0.19900994544868805,"score_spread":0.18905958677713353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2192019351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9714373,0.014188838,0.009074406,0.00020589567,0.0013080842,0.00023843686,0.000046465597,0.00006135535,0.0034392478],"genre_scores_gemma":[0.9974848,0.0014528238,0.00006450272,0.00042437064,0.000011599562,0.000013853705,0.00003915565,0.000024809122,0.00048409885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99768823,0.00044643474,0.0007608654,0.0003051704,0.00010767317,0.0006916358],"domain_scores_gemma":[0.99920434,0.00018369955,0.0002814385,0.0002374342,0.000070687085,0.000022417635],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008011336,0.00026262857,0.00043799385,0.00023690533,0.0005008318,0.00006516737,0.00038851952,0.00023457289,0.00038136175],"category_scores_gemma":[0.000017930166,0.00025962316,0.00021290015,0.00024230198,0.00021107026,0.00020760801,0.000024116167,0.00044925313,0.0004656766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011082921,0.0008575386,0.0010407671,0.00020893404,0.00007173781,0.00018925492,0.012195788,0.00039836238,0.84403414,0.0063082497,0.0011972624,0.13238966],"study_design_scores_gemma":[0.056207504,0.0028967368,0.09203047,0.0022651434,0.00033267427,0.020353638,0.01943115,0.00048029303,0.726115,0.0060298764,0.07030673,0.003550786],"about_ca_topic_score_codex":0.00017654855,"about_ca_topic_score_gemma":0.000012349255,"teacher_disagreement_score":0.12883888,"about_ca_system_score_codex":0.00009905446,"about_ca_system_score_gemma":0.00014570275,"threshold_uncertainty_score":0.9999856},"labels":[],"label_agreement":null},{"id":"W2196653904","doi":"10.14785/lpsn-2015-0010","title":"Atypical hemolytic-uremic syndrome in a patient with adenosine deaminase deficiency","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Complement system in diseases","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Children's Hospital of Eastern Ontario","funders":"","keywords":"Adenosine deaminase; Medicine; Kidney; Atypical hemolytic uremic syndrome; Hemolytic anemia; Adenosine deaminase deficiency; Immunology; Microangiopathic hemolytic anemia; Pathology; Immune system; Internal medicine; Platelet; Thrombotic thrombocytopenic purpura; Complement system; Adenosine","score_opus":0.018345353647702047,"score_gpt":0.22945672082897722,"score_spread":0.21111136718127518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2196653904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99139726,0.0065093166,0.0007665589,0.00021813603,0.00047217353,0.00025822283,0.000012473393,0.000035264286,0.00033058462],"genre_scores_gemma":[0.9994273,0.0000113022115,0.00023027521,0.00016146891,0.000023876475,0.000021403377,0.00001668589,0.000019301508,0.00008835828],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9984404,0.00021988379,0.0004686875,0.00024215397,0.0001273438,0.00050154934],"domain_scores_gemma":[0.99926114,0.00007506494,0.00018763955,0.00023620295,0.00011207037,0.00012788683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003085701,0.00020136945,0.0002956027,0.00020821714,0.00011847355,0.000036885373,0.0002827208,0.00010179338,0.00037259632],"category_scores_gemma":[0.000093890696,0.00015128701,0.00006488916,0.00023625775,0.00011314001,0.0001240776,0.000072815055,0.00023214771,0.0003035542],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013412228,0.006975093,0.69788677,0.00019513191,0.00066590664,0.024327049,0.008442571,0.0011843656,0.057196345,0.0037157151,0.16569084,0.02030801],"study_design_scores_gemma":[0.053784493,0.015531449,0.26711485,0.0031620034,0.00050397177,0.59493345,0.010680061,0.00019946267,0.022131706,0.0044729663,0.024705814,0.0027797904],"about_ca_topic_score_codex":0.000045469136,"about_ca_topic_score_gemma":0.000022307413,"teacher_disagreement_score":0.5706064,"about_ca_system_score_codex":0.00038346823,"about_ca_system_score_gemma":0.0003907454,"threshold_uncertainty_score":0.61693054},"labels":[],"label_agreement":null},{"id":"W2205272171","doi":"10.14785/lpsn-2015-0006","title":"Hemophagocytic lymphohistiocytosis in a patient with CD3δ deficiency","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Hemophagocytic lymphohistiocytosis; Immunology; Cytotoxic T cell; Medicine; Immunodeficiency; CD8; Biology; Immune system; Disease; Internal medicine; Genetics","score_opus":0.025939673115108194,"score_gpt":0.2708467492285784,"score_spread":0.24490707611347018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2205272171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98174506,0.0041532763,0.0011731372,0.0004800652,0.000111066875,0.00026740303,9.267425e-7,0.000031443284,0.012037603],"genre_scores_gemma":[0.99812466,0.00013670181,0.000921296,0.00043813814,0.00006400015,0.000019899444,0.0000026353446,0.000029044708,0.0002636457],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.9980044,0.000072961484,0.00045916004,0.00020053424,0.0007739593,0.0004889927],"domain_scores_gemma":[0.99894476,0.000027102977,0.000133882,0.00024246382,0.00025361354,0.00039816863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00050036726,0.00017168415,0.00034376734,0.00033660993,0.00010815342,0.000059574508,0.00014609421,0.000078478915,0.00013345954],"category_scores_gemma":[0.00015247597,0.00012244452,0.0000763463,0.000500774,0.00010440889,0.00019587394,0.000040668594,0.00025914932,0.00011966749],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014535646,0.0049777958,0.47441253,0.0004394484,0.00038597238,0.037294798,0.02548842,0.0029059357,0.011514453,0.0015332903,0.05255531,0.37395638],"study_design_scores_gemma":[0.19527856,0.043491274,0.20585072,0.005435423,0.0007515716,0.28422186,0.0549836,0.028371517,0.039979763,0.0061902604,0.13082,0.0046254564],"about_ca_topic_score_codex":0.00007707796,"about_ca_topic_score_gemma":0.000006288886,"teacher_disagreement_score":0.36933094,"about_ca_system_score_codex":0.0009589788,"about_ca_system_score_gemma":0.002290136,"threshold_uncertainty_score":0.49931422},"labels":[],"label_agreement":null},{"id":"W2214491818","doi":"10.14785/lpsn-2015-0007","title":"Evaluation of purified natural killer cell functions in familial hemophagocytic lymphohistiocytosis","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Perforin; Immunology; Interleukin 12; Natural killer cell; Secretion; Cytotoxicity; Hemophagocytosis; Hemophagocytic lymphohistiocytosis; Interleukin 21; Tumor necrosis factor alpha; Biology; Medicine; Immune system; Cytotoxic T cell; T cell; Internal medicine; In vitro; Endocrinology; CD8; Disease; Genetics","score_opus":0.05738538913138724,"score_gpt":0.31736352405928764,"score_spread":0.2599781349279004,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2214491818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778401,0.0083168605,0.00039892964,0.0002568284,0.0010732511,0.0003997251,0.0000015355942,0.000018918498,0.011693797],"genre_scores_gemma":[0.9979779,0.00010923136,0.0002025211,0.00010040744,0.00016485013,0.000022035916,0.000011492264,0.000021714162,0.0013898537],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9969654,0.00026974748,0.00061915006,0.00017563382,0.0016447688,0.00032527148],"domain_scores_gemma":[0.9983508,0.000042632513,0.00019609337,0.00023945855,0.00095662114,0.00021441304],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028753362,0.0001503259,0.00035768765,0.00042642877,0.00008863413,0.000026841286,0.00013810625,0.000115187526,0.00030063564],"category_scores_gemma":[0.00050339825,0.00012757628,0.00014382903,0.00043178888,0.00009242469,0.00021630185,0.000035253415,0.00029479517,0.00009003479],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010306821,0.005402434,0.13993567,0.0005282368,0.0010606875,0.00067422126,0.013197814,0.012374985,0.2072726,0.00037932035,0.10610494,0.50276226],"study_design_scores_gemma":[0.2217755,0.0057842624,0.38388202,0.0014606096,0.0029035283,0.0056377663,0.02414857,0.23562397,0.08204232,0.006396155,0.02827974,0.0020655566],"about_ca_topic_score_codex":0.00008844727,"about_ca_topic_score_gemma":0.000008270847,"teacher_disagreement_score":0.5006967,"about_ca_system_score_codex":0.0013116342,"about_ca_system_score_gemma":0.0037313823,"threshold_uncertainty_score":0.6619312},"labels":[],"label_agreement":null},{"id":"W2223041379","doi":"10.14785/lpsn-2014-0011","title":"Monoallelic STAT1 mutations and disease patterns","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Genotype; Phenotype; Genetics; Biology; Mutation; Disease; Genotype-phenotype distinction; Clinical phenotype; Allele; STAT1; Gene; Medicine; Internal medicine","score_opus":0.0057519278127222484,"score_gpt":0.20486637634706834,"score_spread":0.1991144485343461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2223041379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9361494,0.023509577,0.037442923,0.0011403298,0.00087120617,0.000109197055,0.000017917833,0.000057584406,0.0007018713],"genre_scores_gemma":[0.9984292,0.00030499088,0.000036491096,0.00051728287,0.00001042148,0.0000066387743,0.000029845885,0.000012632609,0.0006525388],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99914604,0.00014118322,0.00023175395,0.00014879514,0.000034326007,0.00029791926],"domain_scores_gemma":[0.9996018,0.00007729367,0.000100160614,0.00014778109,0.00004115848,0.000031838874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024341383,0.00012795595,0.00014148238,0.00008932593,0.0005113803,0.000055817374,0.00015528286,0.00006435956,0.0003530353],"category_scores_gemma":[0.00010654091,0.000109065935,0.00006961849,0.00005795617,0.00012721586,0.00012772442,0.000034823828,0.0001845373,0.00014754197],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006856567,0.0010223599,0.06435762,0.000098525445,0.0006311344,0.00006858926,0.0120165935,0.00051594723,0.18229803,0.022698535,0.0055820425,0.71002495],"study_design_scores_gemma":[0.015953794,0.0008583884,0.545977,0.0003540563,0.00041402146,0.0023695787,0.0048232693,0.0011774135,0.007120963,0.0512892,0.36795846,0.001703837],"about_ca_topic_score_codex":0.000031115695,"about_ca_topic_score_gemma":7.113946e-7,"teacher_disagreement_score":0.7083211,"about_ca_system_score_codex":0.000028735321,"about_ca_system_score_gemma":0.00012723492,"threshold_uncertainty_score":0.44475797},"labels":[],"label_agreement":null},{"id":"W2223470267","doi":"10.14785/lpsn-2015-0003","title":"Ten-year anniversary of CD3δ deficiency","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"CD3; Immunodeficiency; Phenotype; Biology; Human immunodeficiency virus (HIV); Immunology; Medicine; Genetics; Gene; Immune system; CD8","score_opus":0.015779671463015253,"score_gpt":0.22405570668215585,"score_spread":0.2082760352191406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2223470267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8587858,0.10367191,0.0038551681,0.00028875773,0.0030008424,0.00015849677,0.000015594596,0.00007129562,0.030152155],"genre_scores_gemma":[0.9986237,0.00017045462,0.00012665115,0.00009487237,0.000008389853,0.0000013239757,0.000009150654,0.000012844902,0.00095256866],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9988798,0.00012743694,0.0003794645,0.00014989468,0.00008177205,0.00038161737],"domain_scores_gemma":[0.99930954,0.000040922165,0.00023323292,0.0002120889,0.00018452393,0.000019698622],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005659445,0.00014698066,0.0002497051,0.0001628463,0.00020781643,0.000017281283,0.00040980542,0.00015286809,0.00035476277],"category_scores_gemma":[0.0001017193,0.00012287353,0.00014445197,0.00022501643,0.00027515047,0.00018820494,0.00006151745,0.00025125715,0.00038901306],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020034,0.0023277523,0.029640114,0.00006557705,0.00057702104,0.00013241348,0.020284824,0.0006523425,0.751741,0.017546333,0.06613456,0.10889465],"study_design_scores_gemma":[0.049490858,0.0061055566,0.061656177,0.0006529823,0.00060710375,0.0130544165,0.091696285,0.00012803572,0.3454143,0.024840608,0.40333542,0.0030182356],"about_ca_topic_score_codex":0.00005959274,"about_ca_topic_score_gemma":2.1262103e-7,"teacher_disagreement_score":0.4063267,"about_ca_system_score_codex":0.00006465203,"about_ca_system_score_gemma":0.0003578013,"threshold_uncertainty_score":0.50106376},"labels":[],"label_agreement":null},{"id":"W2227971208","doi":"10.14785/lpsn-2015-0013","title":"Autosomal dominant transmission of signal transduction and activator of transcription 1 (STAT1) mutation (Thr385Met) and extended lifespan","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Primary immunodeficiency; Biology; Immunodeficiency; STAT1; Mutation; Sepsis; Immunology; Genetics; Medicine; Signal transduction; Gene; Immune system","score_opus":0.007079102152865378,"score_gpt":0.21377274828853673,"score_spread":0.20669364613567134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2227971208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91898817,0.015659824,0.06459597,0.00030864406,0.00024403095,0.00013892741,0.000012853612,0.00001253951,0.000039052276],"genre_scores_gemma":[0.99832416,0.0013718369,0.0001629067,0.000012204971,0.000005929684,0.0000037294753,0.0000050382955,0.000012444431,0.0001017749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880403,0.00019835391,0.0005158155,0.00018288799,0.00007099588,0.0002279045],"domain_scores_gemma":[0.9994447,0.00009119415,0.00028363112,0.0000839446,0.00007826349,0.000018269828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003934985,0.00015998483,0.00030740365,0.00017565656,0.00019487887,0.000009375403,0.00008781888,0.00017436045,0.00031636775],"category_scores_gemma":[0.000017292437,0.00010751332,0.000104645,0.000096789765,0.0003678433,0.00031942155,0.0000062577233,0.00012499085,0.000002027351],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008726116,0.00013450431,0.00006957178,0.000033731285,0.00006385246,0.0000017303253,0.002532303,0.0000021559983,0.7231809,0.0002423753,0.000007375343,0.27285892],"study_design_scores_gemma":[0.005825004,0.0008503868,0.01243816,0.00029404165,0.00009999623,0.00086380093,0.001005942,0.000025333116,0.97591853,0.0012014988,0.0013158121,0.00016148933],"about_ca_topic_score_codex":0.000026347245,"about_ca_topic_score_gemma":3.2677124e-7,"teacher_disagreement_score":0.27269742,"about_ca_system_score_codex":0.00003244809,"about_ca_system_score_gemma":0.00012956909,"threshold_uncertainty_score":0.43842658},"labels":[],"label_agreement":null},{"id":"W2256040837","doi":"10.14785/lpsn-2015-0008","title":"Chronic granulomatous disease with an initial presentation of arthritis and oral ulcers","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster University; University of Toronto","funders":"King Saud University","keywords":"Medicine; Chronic granulomatous disease; Arthritis; Gastroenterology; Primary immunodeficiency; Hemophagocytosis; Macrophage activation syndrome; Internal medicine; Immunology; Erythrocyte sedimentation rate; Bone marrow; Pathology; Disease","score_opus":0.021018572174266937,"score_gpt":0.26207141031446435,"score_spread":0.2410528381401974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2256040837","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906008,0.0052928417,0.0034110236,0.0001234248,0.00028334596,0.00014337967,0.000024200162,0.000021803588,0.000099170495],"genre_scores_gemma":[0.99902797,0.0002768344,0.0003913351,0.00008131261,0.00011018257,0.0000073067117,0.00003905998,0.000016751032,0.000049228936],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99907756,0.00022800802,0.00022364916,0.00016577082,0.00007003804,0.00023496845],"domain_scores_gemma":[0.9994228,0.0000240893,0.00015022165,0.00012348683,0.00013128873,0.00014815129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020119759,0.00013983872,0.00021409868,0.000103026454,0.00013456379,0.00003079316,0.0001112299,0.00006732672,0.000118717064],"category_scores_gemma":[0.000018710447,0.00010708971,0.000035245346,0.000081736456,0.00022147111,0.00033240826,0.000026569744,0.00013229948,0.000019443212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0077670338,0.0005057909,0.009331156,0.000063748295,0.00060280296,0.0009910993,0.0034376564,0.00012735784,0.75358534,0.006717858,0.0027410742,0.21412908],"study_design_scores_gemma":[0.034468397,0.012059578,0.018202884,0.0005796081,0.00033026945,0.008690211,0.0030280573,0.000077736724,0.90272295,0.015061393,0.003874244,0.00090465916],"about_ca_topic_score_codex":0.000044380195,"about_ca_topic_score_gemma":0.000028041775,"teacher_disagreement_score":0.21322441,"about_ca_system_score_codex":0.000060742583,"about_ca_system_score_gemma":0.0003486207,"threshold_uncertainty_score":0.43669918},"labels":[],"label_agreement":null},{"id":"W2265986067","doi":"10.14785/lpsn-2014-0010","title":"The case for adding X-linked agammaglobulinemia to newborn screening","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Hypogammaglobulinemia; X-linked agammaglobulinemia; Bruton's tyrosine kinase; Medicine; Pediatrics; Presentation (obstetrics); Immunology; Antibody; Internal medicine; Surgery","score_opus":0.03190009455341439,"score_gpt":0.27251551547262076,"score_spread":0.24061542091920637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2265986067","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3141519,0.10481217,0.5609144,0.0059516486,0.00920116,0.0012290174,0.00005775166,0.0002326322,0.0034493408],"genre_scores_gemma":[0.99139524,0.00008203176,0.0050426363,0.0008696021,0.000084363804,0.000047751495,0.000021057038,0.00003860501,0.0024187372],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99851334,0.00013869397,0.0004443923,0.00019646906,0.000050758477,0.00065634266],"domain_scores_gemma":[0.9989726,0.00030928582,0.00018217215,0.0002502552,0.00024232343,0.00004338225],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0013808581,0.0001919645,0.00021460088,0.00009137471,0.0016094883,0.00014752493,0.00044678833,0.00014879087,0.000038130092],"category_scores_gemma":[0.0005472908,0.00013326247,0.0001693892,0.00019331605,0.000117347765,0.00013266386,0.00008016801,0.00029539008,0.00015578946],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012082646,0.00008548851,0.0001321099,0.000005895524,0.0002533537,0.00027745616,0.0028419176,0.00088156963,0.04730207,0.0016070121,0.042868607,0.9025363],"study_design_scores_gemma":[0.004575622,0.00031518115,0.00019615308,0.00006088654,0.00006298306,0.016524317,0.007924596,0.00025116545,0.0031704989,0.0009647802,0.96564424,0.00030957646],"about_ca_topic_score_codex":0.00007906959,"about_ca_topic_score_gemma":0.0000051073357,"teacher_disagreement_score":0.9227756,"about_ca_system_score_codex":0.000092300346,"about_ca_system_score_gemma":0.0002374584,"threshold_uncertainty_score":0.9996903},"labels":[],"label_agreement":null},{"id":"W2267579896","doi":"10.14785/lpsn-2015-0012","title":"The effects of STAT1 dysfunction on the gut","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Western University; Hospital for Sick Children","funders":"","keywords":"STAT1; Colitis; Inflammation; Biology; Mutation; Medicine; Cancer research; Immunology; Gene; Genetics","score_opus":0.004163021188793406,"score_gpt":0.1851680059231393,"score_spread":0.1810049847343459,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2267579896","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9325423,0.049358357,0.0036154687,0.004301807,0.006902523,0.00037028608,0.000004845592,0.000037326154,0.002867035],"genre_scores_gemma":[0.99576557,0.0010025697,0.0000012544942,0.00023589886,0.000010931884,0.000014549649,5.980211e-7,0.000008865739,0.0029597362],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990062,0.00028587948,0.00024675013,0.00009277633,0.000055594854,0.0003127879],"domain_scores_gemma":[0.9981478,0.001341735,0.00020340107,0.00024580452,0.000056329063,0.0000049278183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006262147,0.000109561464,0.00011687228,0.000038797134,0.0007892234,0.000020755233,0.0003387297,0.000078955156,0.00013949988],"category_scores_gemma":[0.00036714372,0.00003971611,0.00011972294,0.000081766906,0.00032155082,0.000060912986,0.000028298231,0.00016825726,0.00021654609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002890594,0.000079244586,0.00013336836,0.0000047731646,0.00014194995,0.0000021069727,0.00041899056,0.0000014947501,0.72860783,0.008373871,0.0052773836,0.25666994],"study_design_scores_gemma":[0.0059083845,0.0013989217,0.027961822,0.0004136744,0.00009026052,0.00043606388,0.0010698369,0.0000022494223,0.62364864,0.010381598,0.3283877,0.00030086417],"about_ca_topic_score_codex":0.000009863882,"about_ca_topic_score_gemma":3.5104347e-7,"teacher_disagreement_score":0.3231103,"about_ca_system_score_codex":0.00005950652,"about_ca_system_score_gemma":0.00010035238,"threshold_uncertainty_score":0.60701483},"labels":[],"label_agreement":null},{"id":"W2268167744","doi":"10.14785/lymphosign-2015-0014","title":"Heterozygous mutations in RelB can be associated with immune dysregulation and lymphoma","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; Janeway Children's Health and Rehabilitation Centre; Memorial University of Newfoundland","funders":"Ontario Ministry of Research and Innovation; Hospital for Sick Children; Genome Canada; Ontario Genomics; Ontario Genomics Institute; Immunodeficiency Canada; Jeffrey Modell Foundation","keywords":"RELB; Immune system; Immunology; Haploinsufficiency; Lymphoma; Immune dysregulation; Biology; Immunodeficiency; Antigen; Cancer research; Medicine; Transcription factor; Genetics; NFKB1; Phenotype; Gene","score_opus":0.008958729128634263,"score_gpt":0.21044453066691082,"score_spread":0.20148580153827655,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2268167744","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99606967,0.00035911603,0.0027752887,0.0005113559,0.00007957216,0.00009039587,0.000017778044,0.000011337752,0.00008545937],"genre_scores_gemma":[0.99903226,0.000074671705,0.00038732012,0.00014482794,0.00008946924,0.00000895775,0.000030171446,0.000027454866,0.00020484724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990268,0.000097325435,0.0002548942,0.00020856007,0.00015841574,0.00025402958],"domain_scores_gemma":[0.9994403,0.000033817567,0.00017601911,0.00015241487,0.00009888209,0.000098568264],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028469096,0.00014016416,0.00013789086,0.00008667179,0.0001242833,0.000044210177,0.00010403672,0.00012264568,0.000011966453],"category_scores_gemma":[0.00012209742,0.000099061326,0.000041229523,0.000103549995,0.00009164127,0.000009874967,0.000030233101,0.000042279305,0.0000012273699],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001217177,0.00006560352,0.015087176,0.0000024307308,0.000067646266,0.00004972477,0.00023905185,0.000066549175,0.97513133,0.00003793723,0.00016032309,0.00897049],"study_design_scores_gemma":[0.0131899435,0.0017174723,0.21310379,0.00048536062,0.00007743231,0.0023369696,0.0002526785,0.0002013059,0.76533836,0.0014326662,0.001137152,0.0007268652],"about_ca_topic_score_codex":0.00002888118,"about_ca_topic_score_gemma":0.00014739465,"teacher_disagreement_score":0.20979299,"about_ca_system_score_codex":0.0001274168,"about_ca_system_score_gemma":0.0001807635,"threshold_uncertainty_score":0.40396035},"labels":[],"label_agreement":null},{"id":"W2279369651","doi":"10.14785/lpsn-2015-0001","title":"Dendritic cell defects in primary immunodeficiency disorders","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Immune system; Primary immunodeficiency; Antigen presentation; Immunology; Dendritic cell; Priming (agriculture); Acquired immune system; Antigen; Immunodeficiency; Antigen-presenting cell; Immunophenotyping; Biology; T cell; Neuroscience","score_opus":0.010269691937306445,"score_gpt":0.2171805520174872,"score_spread":0.20691086008018075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2279369651","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8871113,0.10215741,0.0009456734,0.00012597794,0.0017497463,0.00015161304,0.000002516664,0.000041739862,0.0077140373],"genre_scores_gemma":[0.99609894,0.0016526508,0.00012912243,0.00037467634,0.000027161575,0.000011142977,0.000010881506,0.000029985476,0.0016654718],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981579,0.00047270194,0.00046447295,0.0002045022,0.000080227226,0.0006201759],"domain_scores_gemma":[0.99932605,0.00015814435,0.00015647677,0.00025314116,0.000063420506,0.000042753276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084163,0.00022348958,0.0003103466,0.00030051646,0.00022441753,0.000055097156,0.000419071,0.0002113454,0.00023726841],"category_scores_gemma":[0.00008859903,0.00019583627,0.00014850836,0.00026893758,0.00017437196,0.0002621712,0.000060475148,0.00046434006,0.0005732809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021232967,0.00095111463,0.020099847,0.000024514904,0.000092021466,0.0000807246,0.0037872656,0.00007000954,0.93928653,0.00024897078,0.0065474696,0.026688233],"study_design_scores_gemma":[0.06679612,0.005166252,0.1843344,0.0006738378,0.00019118296,0.013104205,0.008960593,0.000036992024,0.39176396,0.010525878,0.3154659,0.002980701],"about_ca_topic_score_codex":0.00008054963,"about_ca_topic_score_gemma":0.0000064955007,"teacher_disagreement_score":0.54752254,"about_ca_system_score_codex":0.00032114226,"about_ca_system_score_gemma":0.00056940084,"threshold_uncertainty_score":0.79859716},"labels":[],"label_agreement":null},{"id":"W2312692918","doi":"10.14785/lpsn-2014-0005","title":"Imaging of STAT3 deficiency infectious complications","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"","keywords":"Medicine; Rash; Primary immunodeficiency; Eczematous dermatitis; Immunology; Dermatology; Atopic dermatitis; Pathology; Immune system","score_opus":0.006097703949815471,"score_gpt":0.22020913459264033,"score_spread":0.21411143064282487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2312692918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6993244,0.045900065,0.20837009,0.00053726835,0.0021188788,0.00020713701,0.000012752621,0.00013013544,0.043399263],"genre_scores_gemma":[0.99944973,0.00009394915,0.00008084397,0.00020820108,0.0000047552217,0.0000039542956,0.000008096316,0.00001117061,0.00013932052],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989827,0.00013898661,0.00039160904,0.00013267391,0.000043593776,0.00031043874],"domain_scores_gemma":[0.99927956,0.00010290049,0.0002591953,0.00022397372,0.00012582856,0.000008534245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044217674,0.00011959533,0.00019028044,0.00014878986,0.00046469984,0.000022907667,0.00028551303,0.000059187125,0.00022057307],"category_scores_gemma":[0.000093031565,0.000105519466,0.00011476003,0.0001759655,0.00024221762,0.000115237235,0.000037481925,0.00020299236,0.00017627658],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000050713334,0.0005749211,0.018734265,0.000024098237,0.00008328227,0.0000017634952,0.0018427979,0.00033687425,0.7489127,0.029047474,0.0021708934,0.19822024],"study_design_scores_gemma":[0.017824028,0.0013144017,0.4003184,0.00047256242,0.00035534965,0.010377987,0.0052530887,0.0013040616,0.14253162,0.056316584,0.36195415,0.001977772],"about_ca_topic_score_codex":0.000066233966,"about_ca_topic_score_gemma":5.6350706e-7,"teacher_disagreement_score":0.60638106,"about_ca_system_score_codex":0.000036171718,"about_ca_system_score_gemma":0.000089149726,"threshold_uncertainty_score":0.43029588},"labels":[],"label_agreement":null},{"id":"W2316881644","doi":"10.14785/lpsn-2014-0001","title":"Home gammaglobulin therapy: a patient survey of intravenous and subcutaneous options in Canada","year":2014,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; McNemar's test; Intravenous Immunoglobulin Therapy; Referral; Cohort; Pediatrics; Emergency medicine; Antibody; Internal medicine; Family medicine; Immunology","score_opus":0.007036410422910884,"score_gpt":0.18028400578314854,"score_spread":0.17324759536023765,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316881644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9697113,0.02934161,0.00018040987,0.00005760772,0.00049010024,0.000083119514,0.000018470966,0.0000051977663,0.000112160706],"genre_scores_gemma":[0.998507,0.0013097776,0.000015108584,0.00011532473,0.0000019213746,0.0000027097647,0.000016149326,0.000009801094,0.000022206554],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99868923,0.00038831044,0.0004215966,0.0001349371,0.000049061175,0.00031687552],"domain_scores_gemma":[0.99940497,0.00018182595,0.0001839862,0.00014047862,0.00007670417,0.000012056289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045753014,0.00013101911,0.00027801734,0.000095739335,0.00014483133,0.000012898144,0.00016776151,0.00007968449,0.0001316083],"category_scores_gemma":[0.00006419736,0.00011201192,0.00003434271,0.00015124604,0.00010935144,0.000041789375,0.000026333186,0.00021881449,0.000006433786],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015143609,0.0006831073,0.06404027,0.000024344408,0.0002582217,0.00009424014,0.005032466,0.0009178505,0.13282108,0.00053045625,0.00052931265,0.7935543],"study_design_scores_gemma":[0.0050901487,0.0013507582,0.9739699,0.000112543756,0.0000192069,0.0041185603,0.0015605695,0.00015755378,0.0061270716,0.0007163502,0.0062773037,0.0005000768],"about_ca_topic_score_codex":0.61012936,"about_ca_topic_score_gemma":0.13613343,"teacher_disagreement_score":0.9099296,"about_ca_system_score_codex":0.00012959124,"about_ca_system_score_gemma":0.0006916109,"threshold_uncertainty_score":0.87962985},"labels":[],"label_agreement":null},{"id":"W2321209078","doi":"10.14785/lpsn-2015-0015","title":"A protocol for matched unrelated donor hematopoietic stem cell transplantations for severe combined immunodeficiency","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Hematopoietic Stem Cell Transplantation","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Hematopoietic stem cell transplantation; Immunodeficiency; Transplantation; Human leukocyte antigen; Stem cell; Medicine; Hematopoietic stem cell; Protocol (science); Immunology; Haematopoiesis; Internal medicine; Biology; Immune system; Antigen; Pathology; Genetics","score_opus":0.030672890126550507,"score_gpt":0.2950539373101566,"score_spread":0.2643810471836061,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2321209078","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.04218544,0.00005369202,0.78296804,0.0019746067,0.0003624943,0.17088549,0.00019078572,0.0001960236,0.0011834345],"genre_scores_gemma":[0.6862487,0.00005468689,0.024348332,0.0004710796,0.00027089397,0.2837871,0.00006911388,0.00024187661,0.004508233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99774325,0.000067456676,0.00093578396,0.0003397963,0.00032929375,0.0005844412],"domain_scores_gemma":[0.99809915,0.0006221295,0.00035600623,0.00028406133,0.00036484108,0.00027382042],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005718211,0.00031783184,0.00052073033,0.00019477891,0.0003388191,0.00006622645,0.000204788,0.00021229741,0.00022663856],"category_scores_gemma":[0.000018382996,0.000209696,0.00036065336,0.00020872324,0.000067500005,0.00019500035,0.000006368184,0.00012569691,0.00004974467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023297576,0.0026206991,0.0045318296,0.0098151285,0.0006975681,0.0001660248,0.012208651,0.000059774593,0.9214031,0.004745274,0.007908034,0.012546327],"study_design_scores_gemma":[0.25783506,0.008612873,0.0025927166,0.010639256,0.0023560831,0.02040403,0.002869619,0.001867229,0.6679354,0.011676657,0.011183243,0.00202785],"about_ca_topic_score_codex":0.0000031302172,"about_ca_topic_score_gemma":9.692791e-7,"teacher_disagreement_score":0.7586197,"about_ca_system_score_codex":0.0002465075,"about_ca_system_score_gemma":0.00055738474,"threshold_uncertainty_score":0.8551155},"labels":[],"label_agreement":null},{"id":"W2342059280","doi":"10.14785/lymphosign-2016-0002","title":"Paradoxical hyperhidrosis in a patient with ectodermal dysplasia and immunodeficiency","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Ectodermal dysplasia; SWEAT; Hyperhidrosis; Dermatology; Immunodeficiency; Skin biopsy; Biopsy; Medicine; Phenotype; Pathology; Biology; Internal medicine; Immunology; Genetics; Immune system; Gene","score_opus":0.004607050489887849,"score_gpt":0.18831938545786103,"score_spread":0.18371233496797318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342059280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99250054,0.001290902,0.005608381,0.0001932956,0.00007654078,0.00007626854,0.000005843602,0.0000064634837,0.00024174033],"genre_scores_gemma":[0.9984188,0.00024479788,0.0010415487,0.0001589406,0.00007385792,0.000009249889,0.0000017551488,0.000020456877,0.000030604668],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989509,0.00006354495,0.00023193515,0.00025345478,0.00017590138,0.0003242853],"domain_scores_gemma":[0.9995589,0.000019519028,0.00009051801,0.00016865045,0.000045336572,0.00011706135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016726556,0.00015363563,0.00014033365,0.00006384235,0.00009321122,0.000039855928,0.0001309175,0.00009885541,0.000021971102],"category_scores_gemma":[0.00003604497,0.00009325057,0.000044106964,0.00007310573,0.00010235012,0.000008754626,0.000054523785,0.000081389124,0.000006168655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028657215,0.000084326886,0.015575216,0.0000033307062,0.000020915928,0.00013852563,0.000111915106,0.00001584969,0.9702832,0.000056594872,0.00017106545,0.013252476],"study_design_scores_gemma":[0.0057453346,0.002984326,0.015790544,0.00028804832,0.00003378183,0.014959354,0.00016299458,0.00008670197,0.95478296,0.0004289548,0.0041014226,0.0006355962],"about_ca_topic_score_codex":0.0000076690585,"about_ca_topic_score_gemma":0.00000652061,"teacher_disagreement_score":0.015500271,"about_ca_system_score_codex":0.000042454845,"about_ca_system_score_gemma":0.0001331155,"threshold_uncertainty_score":0.3802648},"labels":[],"label_agreement":null},{"id":"W2401135507","doi":"10.14785/lymphosign-2016-0003","title":"<i>IL2RG</i>: A series of three novel mutations with clinical manifestations","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Frameshift mutation; Exon; Mutation; Context (archaeology); Molecular biology; Severe combined immunodeficiency; Phenotype; Gene; Biology; Genetics","score_opus":0.023694298739260385,"score_gpt":0.25464178701154533,"score_spread":0.23094748827228495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401135507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.79808295,0.00624537,0.18935886,0.0019087214,0.001338385,0.0002315638,0.00007387188,0.00006728038,0.0026929947],"genre_scores_gemma":[0.99772966,0.00019080163,0.000891102,0.000093480834,0.000009974083,0.000008033143,0.000009070441,0.00001563594,0.0010522453],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988745,0.00008148471,0.00055447966,0.00015285898,0.00005517092,0.0002815341],"domain_scores_gemma":[0.9990285,0.0002324628,0.0003416897,0.00020449386,0.00018076834,0.000012069835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003937492,0.00013579591,0.00023567391,0.00009772722,0.00033395312,0.000015779653,0.00024635447,0.00011852566,0.00037985167],"category_scores_gemma":[0.00010113099,0.00007876852,0.00012897998,0.00013956583,0.00064944214,0.0002757242,0.000026574422,0.00016281247,0.00010949591],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012362197,0.0013026666,0.026877984,0.000019630925,0.0008889661,0.000041792504,0.0016115593,0.00004717786,0.8487394,0.0274214,0.0013568042,0.09045644],"study_design_scores_gemma":[0.04858251,0.00632195,0.61359996,0.0015789944,0.0009337054,0.033027586,0.008140128,0.000019152121,0.10981236,0.0223191,0.15372252,0.0019420148],"about_ca_topic_score_codex":0.00002228378,"about_ca_topic_score_gemma":0.000010085449,"teacher_disagreement_score":0.738927,"about_ca_system_score_codex":0.000022550925,"about_ca_system_score_gemma":0.00029884232,"threshold_uncertainty_score":0.41591096},"labels":[],"label_agreement":null},{"id":"W2409660692","doi":"10.14785/lymphosign-2016-0001","title":"Review of hereditary angioedema","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Toronto","funders":"","keywords":"Hereditary angioedema; Bradykinin; Angioedema; Medicine; Edema; C1-inhibitor; Disease; Kallikrein; Pathophysiology; Immunology; Dermatology; Internal medicine; Biology; Enzyme; Receptor; Biochemistry","score_opus":0.017241155752796257,"score_gpt":0.2735669396615144,"score_spread":0.25632578390871813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409660692","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09023526,0.863445,0.009689144,0.023902506,0.0022834928,0.00076445594,0.00003626754,0.00015667694,0.009487206],"genre_scores_gemma":[0.7941998,0.18271692,0.0038869167,0.011422752,0.0035380882,0.000014440794,0.000015271486,0.000097737524,0.004108017],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985209,0.000051202347,0.0006116553,0.0001627697,0.00037140193,0.00028203105],"domain_scores_gemma":[0.9987918,0.00011440069,0.00029684097,0.0002684593,0.0002540531,0.00027440581],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005220599,0.000160764,0.00045418396,0.0001082911,0.000077013574,0.000008801279,0.00013313926,0.00007510806,0.0016483797],"category_scores_gemma":[0.00022039635,0.00009554559,0.00034490612,0.0001904488,0.00009050067,0.00016997472,0.000026090938,0.00006854099,0.000073422016],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030717437,0.00030875774,0.053062156,0.0027792854,0.00038898794,0.00035625792,0.00020989441,3.9251123e-7,0.016838832,0.0011279522,0.56972885,0.35489148],"study_design_scores_gemma":[0.017842107,0.0026629989,0.18350662,0.19171503,0.0016125607,0.037886404,0.00019627975,0.000066669985,0.056056846,0.010120643,0.49705797,0.00127587],"about_ca_topic_score_codex":0.000011713525,"about_ca_topic_score_gemma":6.5549614e-7,"teacher_disagreement_score":0.7039646,"about_ca_system_score_codex":0.00009889941,"about_ca_system_score_gemma":0.00030332358,"threshold_uncertainty_score":0.99926424},"labels":[],"label_agreement":null},{"id":"W2466587609","doi":"10.14785/lymphosign-2016-0005","title":"A clinical trial protocol for the study of intravenous immunoglobulin in patients with primary antibody immunodeficiency disorders","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Protocol (science); Primary immunodeficiency; Antibody; Guideline; Clinical trial; Immunodeficiency; Common variable immunodeficiency; Immunology; Intensive care medicine; Internal medicine; Alternative medicine; Immune system; Pathology","score_opus":0.016401841721484556,"score_gpt":0.30717164113197654,"score_spread":0.29076979941049197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2466587609","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9001444,0.0009332533,0.0039780806,0.00010814541,0.0009063855,0.09377457,0.000013792509,0.000023518645,0.00011783552],"genre_scores_gemma":[0.98004353,0.000043020656,0.00003551566,0.00004571362,0.000013555517,0.019694963,0.000008186274,0.00003262082,0.000082869985],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99683404,0.0005345094,0.0014935567,0.00035732146,0.00016149084,0.0006190547],"domain_scores_gemma":[0.9976952,0.00074873876,0.0008242801,0.00053232576,0.00018816286,0.000011261179],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019094629,0.00030273575,0.0006162574,0.0001694378,0.0005018973,0.000032722335,0.0008795577,0.00019840473,0.000109391694],"category_scores_gemma":[0.00019699441,0.00014500505,0.00024309967,0.00029433836,0.00050464564,0.00020078506,0.0000994257,0.00037793646,0.000015881955],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.27645373,0.030868212,0.13627599,0.000046943263,0.0008300324,0.0000036804583,0.0033951395,0.000050743172,0.0069942,0.0001359414,0.00016050901,0.54478484],"study_design_scores_gemma":[0.42412272,0.022650331,0.5437777,0.00025861966,0.000105145664,0.000021582191,0.0016691582,0.000003126005,0.00014402386,0.00023580648,0.0066215666,0.00039019383],"about_ca_topic_score_codex":0.00009154126,"about_ca_topic_score_gemma":0.0000063015495,"teacher_disagreement_score":0.5443947,"about_ca_system_score_codex":0.00010046235,"about_ca_system_score_gemma":0.0004089789,"threshold_uncertainty_score":0.5913134},"labels":[],"label_agreement":null},{"id":"W2479909615","doi":"10.14785/lymphosign-2016-0004","title":"Efficacy, safety, and tolerability of Kedrion 10% IVIG in primary immunodeficiency","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; Brampton Civic Hospital","funders":"","keywords":"Tolerability; Medicine; Primary immunodeficiency; Adverse effect; Pharmacokinetics; Off-label use; Clinical endpoint; Discontinuation; Pediatrics; Internal medicine; Clinical trial","score_opus":0.0061360235716885385,"score_gpt":0.20497297522069455,"score_spread":0.198836951649006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2479909615","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95060635,0.044171285,0.0014233765,0.00043476978,0.0005060554,0.00017299328,0.000010628534,0.000023867271,0.0026506698],"genre_scores_gemma":[0.9974781,0.0015570164,0.00003241932,0.000062640545,0.0000038581,0.0000031577756,0.0000060964467,0.000013491211,0.00084317004],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99811,0.00026028394,0.0008324126,0.00026407294,0.000074427255,0.00045878367],"domain_scores_gemma":[0.99907476,0.00023501556,0.0003065014,0.00029264862,0.00007919741,0.000011857387],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001090083,0.0002024242,0.0004598949,0.0001932825,0.0002274574,0.000015623054,0.00033526818,0.00019953688,0.0007434683],"category_scores_gemma":[0.00016451374,0.0001361554,0.00012772948,0.00020212607,0.0005069336,0.00021653317,0.00011386227,0.0002199642,0.00007824161],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013454999,0.0004916662,0.005870911,0.000020273952,0.000043353488,0.000005367497,0.0008120094,0.000009171878,0.72242,0.0004872501,0.000114179355,0.2683803],"study_design_scores_gemma":[0.020167015,0.000909047,0.87972504,0.0007171171,0.00005626283,0.0012324554,0.00054676534,0.000007975698,0.057074614,0.0020032655,0.03688344,0.00067697675],"about_ca_topic_score_codex":0.00005613069,"about_ca_topic_score_gemma":0.0000010740503,"teacher_disagreement_score":0.87385416,"about_ca_system_score_codex":0.00015185055,"about_ca_system_score_gemma":0.00019953423,"threshold_uncertainty_score":0.8140456},"labels":[],"label_agreement":null},{"id":"W2507722250","doi":"10.14785/lymphosign-2016-0007","title":"Management of infections in the immunocompromised child: General principles","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Novelty; Intensive care medicine; Broad spectrum; Medicine; Pediatrics; Psychology","score_opus":0.015338731338853518,"score_gpt":0.25656771087798685,"score_spread":0.24122897953913333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2507722250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9840647,0.0003112709,0.0020370502,0.0030215522,0.00024887532,0.0004127288,0.000003148492,0.000022091737,0.009878603],"genre_scores_gemma":[0.9980016,0.00063773827,0.0005754711,0.00013837102,0.00009550402,0.000036447356,7.396262e-7,0.000010798642,0.00050336815],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9990474,0.00006777923,0.00033572273,0.00011465393,0.00024845023,0.00018601588],"domain_scores_gemma":[0.9995056,0.000039123915,0.00012932946,0.00022071577,0.000037258378,0.00006797631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027031061,0.00011113063,0.0001730955,0.00014976299,0.00011697343,0.000017705719,0.00010784335,0.000035457113,0.00010019212],"category_scores_gemma":[0.000010732211,0.000053405216,0.00013132913,0.00018756645,0.000047028392,0.0000569404,0.000022308568,0.000097193915,0.000023529356],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019407423,0.00742228,0.21576338,0.00023593742,0.0026041144,0.004131247,0.0020022811,0.00019341597,0.27904692,0.027551929,0.0010722808,0.45803547],"study_design_scores_gemma":[0.017285766,0.0010743036,0.9256897,0.000981492,0.0002334784,0.018114517,0.0002439827,0.0000838771,0.0133618815,0.0008293289,0.021905536,0.00019615318],"about_ca_topic_score_codex":0.000012157568,"about_ca_topic_score_gemma":0.0000032676146,"teacher_disagreement_score":0.7099263,"about_ca_system_score_codex":0.00019746086,"about_ca_system_score_gemma":0.00004539801,"threshold_uncertainty_score":0.21778016},"labels":[],"label_agreement":null},{"id":"W2521485041","doi":"10.14785/lymphosign-2016-0006","title":"Immunodeficiency and severe gastrointestinal manifestations in a patient with novel DKC1 mutations causing Hoyeraal–Hreidarsson syndrome","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Dyskeratosis congenita; Immunodeficiency; Medicine; Immunology; Mutation; Wiskott–Aldrich syndrome; Primary immunodeficiency; Immune system; Telomere; Biology; Genetics","score_opus":0.012354609017193319,"score_gpt":0.2281211882212838,"score_spread":0.21576657920409048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2521485041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9745112,0.00029386478,0.02362694,0.0010258895,0.000072091956,0.00021585046,0.000023438715,0.000031947013,0.00019877823],"genre_scores_gemma":[0.98669934,0.00006844041,0.012854849,0.00020971225,0.000031294414,0.000009933092,0.000004439625,0.000027800992,0.00009417103],"study_design_codex":"observational","study_design_gemma":"case_report","domain_scores_codex":[0.99845695,0.00004045497,0.0004276524,0.0002636082,0.00037550283,0.00043583658],"domain_scores_gemma":[0.9990808,0.00013659519,0.00019474725,0.00017151608,0.00018407253,0.00023230023],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000187693,0.0002063213,0.00025281342,0.00032022467,0.00025385176,0.000069654954,0.00006564688,0.000040524148,0.0000779722],"category_scores_gemma":[0.00011586737,0.0001341186,0.000048013226,0.00030293505,0.00014866296,0.00031006357,0.000024585124,0.0001980702,0.000007918367],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014187758,0.0017227469,0.61592764,0.0001684308,0.0001391967,0.028904956,0.0073281145,0.00021937421,0.27407977,0.0008792895,0.00028052702,0.06893114],"study_design_scores_gemma":[0.0043624938,0.0012349953,0.4655679,0.0017925798,0.00005990241,0.52465266,0.0012240082,0.00021275316,0.0004000844,0.00019063587,0.000059391507,0.00024259706],"about_ca_topic_score_codex":0.00009446809,"about_ca_topic_score_gemma":0.000031412976,"teacher_disagreement_score":0.49574772,"about_ca_system_score_codex":0.00030145183,"about_ca_system_score_gemma":0.00045720456,"threshold_uncertainty_score":0.54691976},"labels":[],"label_agreement":null},{"id":"W2534060621","doi":"10.14785/lymphosign-2016-0008","title":"Abnormal apoptosis causes colitis and enteritis in patients with Hoyeraal–Hreidarsson syndrome due to DKC1 mutations","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Telomeres, Telomerase, and Senescence","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Pathology; Dyskeratosis congenita; Mucocutaneous zone; Medicine; Germline mutation; Enteritis; Dysplasia; Enteropathy; Histopathology; Telomerase; Biology; Internal medicine; Disease; Mutation; Genetics","score_opus":0.007094665349895104,"score_gpt":0.21650137359281432,"score_spread":0.2094067082429192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2534060621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99720275,0.0001245129,0.00086067826,0.0011299911,0.00018895675,0.00032939113,0.000053192136,0.000030209909,0.000080319325],"genre_scores_gemma":[0.9977681,0.000117978874,0.0012193094,0.00060183,0.00008453262,0.000023508597,0.000007546598,0.000032927066,0.00014426094],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99837095,0.00006463172,0.0003936952,0.00027358808,0.00041614773,0.00048097837],"domain_scores_gemma":[0.9989411,0.000082546256,0.00011321649,0.00017652752,0.00017661726,0.0005099738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015596235,0.00021207886,0.00038896088,0.00035448387,0.00017352856,0.000076688295,0.00010281856,0.00007608641,0.00019969058],"category_scores_gemma":[0.0000868727,0.00014378957,0.000049352868,0.00028397152,0.000108437125,0.00033321194,0.00003380839,0.0001277514,0.000029834531],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093216304,0.00031146436,0.95346326,0.00004317895,0.000087092994,0.0011185734,0.0009997335,0.0000015590138,0.0014262624,0.00004567209,0.0006790523,0.040891968],"study_design_scores_gemma":[0.006010233,0.0014005614,0.9824106,0.0010128162,0.000046634166,0.0060465047,0.00015139287,0.0000022332172,0.0022002936,0.000057506037,0.00043555308,0.00022568677],"about_ca_topic_score_codex":0.00011152781,"about_ca_topic_score_gemma":0.000060897513,"teacher_disagreement_score":0.04066628,"about_ca_system_score_codex":0.00025555366,"about_ca_system_score_gemma":0.00017133125,"threshold_uncertainty_score":0.5863569},"labels":[],"label_agreement":null},{"id":"W2549899067","doi":"10.14785/lymphosign-2016-0011","title":"Whole exome and genome sequencing for Mendelian immune disorders: from molecular diagnostics to new disease variant and gene discovery","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Ontario Genomics","funders":"Hospital for Sick Children","keywords":"Exome sequencing; Exome; Mendelian inheritance; Computational biology; Biology; Genome; Genetics; DNA sequencing; Whole genome sequencing; Genomics; Gene; Mutation","score_opus":0.007107602807530526,"score_gpt":0.21062092770714036,"score_spread":0.20351332489960983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2549899067","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.69602865,0.015246492,0.286993,0.00096378895,0.0001324092,0.00019461576,0.00043148195,0.000004405061,0.0000051353422],"genre_scores_gemma":[0.9868656,0.0059990496,0.005717444,0.0006216804,0.0004816992,0.000020290538,0.00008495561,0.000044605855,0.00016468979],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989615,0.00002909946,0.0002394542,0.00035864784,0.00010272557,0.00030858448],"domain_scores_gemma":[0.99899846,0.000037191585,0.00009061423,0.00023535341,0.0000461528,0.00059222686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010497523,0.00019796818,0.00016849049,0.000052979394,0.0001499789,0.00016293238,0.00015803802,0.00006769712,0.00000773685],"category_scores_gemma":[0.0001463686,0.00014601543,0.00010017176,0.00003624618,0.0000462454,0.000018007098,0.0001415756,0.00003212858,0.0000022248494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022016748,0.000030069661,0.00063263415,0.000008241379,0.00010734576,0.000070824935,0.000072821,0.0000665491,0.99305964,0.00008417382,0.00032268223,0.0053248745],"study_design_scores_gemma":[0.033213507,0.0052075414,0.15525119,0.0011765786,0.0020836561,0.0018009986,0.0015517224,0.0004937491,0.44696623,0.16274434,0.18325943,0.0062510464],"about_ca_topic_score_codex":0.000051174113,"about_ca_topic_score_gemma":0.000008988434,"teacher_disagreement_score":0.5460934,"about_ca_system_score_codex":0.000047334437,"about_ca_system_score_gemma":0.00030315545,"threshold_uncertainty_score":0.59543365},"labels":[],"label_agreement":null},{"id":"W2597851367","doi":"10.14785/lymphosign-2016-0016","title":"Hematopoietic stem cell transplantations for primary immune deficiencies associated with NFκB mutations: A review of the literature","year":2017,"lang":"en","type":"review","venue":"LymphoSign Journal","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Hematopoietic stem cell transplantation; Immune system; Immunodeficiency; Medicine; Immune dysregulation; Primary immunodeficiency; Immunology; Stem cell; Severe combined immunodeficiency; Chimera (genetics); Common variable immunodeficiency; Hypohidrotic ectodermal dysplasia; Transplantation; Ectodermal dysplasia; Biology; Internal medicine; Genetics; Antibody; Dermatology; Gene","score_opus":0.0337985231434149,"score_gpt":0.2896182702670133,"score_spread":0.2558197471235984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2597851367","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006485492,0.9964887,0.0015018374,0.000030124937,0.00019119693,0.0010134985,0.0005176005,0.000006462352,0.00018572941],"genre_scores_gemma":[0.00019807863,0.9979443,0.00040974712,0.000106693224,0.00010147139,0.00014479893,0.0005891681,0.00006011113,0.0004456123],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9980568,0.00026620002,0.0008087064,0.0002863456,0.00030506184,0.00027684876],"domain_scores_gemma":[0.9969758,0.000118491575,0.0018249323,0.00059454545,0.0004175767,0.00006870184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076542015,0.00036572458,0.0010640156,0.00007048788,0.00044812702,0.00010647276,0.0008182567,0.00030069906,0.000004623587],"category_scores_gemma":[0.00009897904,0.00021634066,0.00090604386,0.00020056899,0.00014155978,0.000009188809,0.000042803393,0.0002721721,0.0000012027871],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015449549,0.0009519347,0.000028673025,0.63737935,0.0031335575,0.00010912613,0.0021664847,0.000040908624,0.01714324,0.00023951528,0.0070331474,0.3316196],"study_design_scores_gemma":[0.001352589,0.00051918864,0.000011715372,0.55653703,0.0043837028,0.0030561169,0.00006107545,0.0000014137427,0.004970597,0.00008985413,0.42825964,0.00075706776],"about_ca_topic_score_codex":7.0527926e-7,"about_ca_topic_score_gemma":0.0000011531323,"teacher_disagreement_score":0.4212265,"about_ca_system_score_codex":0.00008760739,"about_ca_system_score_gemma":0.0016384636,"threshold_uncertainty_score":0.8822116},"labels":[],"label_agreement":null},{"id":"W2616868904","doi":"10.14785/lymphosign-2017-0005","title":"Managing Newborn Screening for SCID in a Referral Centre","year":2017,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Newborn screening; Flow chart; Novelty; Statement (logic); Medicine; Referral; Severe combined immunodeficiency; Pediatrics; Family medicine; Psychology; Biology; Engineering","score_opus":0.028536276115430692,"score_gpt":0.2753689609319138,"score_spread":0.24683268481648313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2616868904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7262285,0.075924076,0.15417857,0.013110151,0.00897612,0.0012452607,0.00004117914,0.00018182522,0.020114318],"genre_scores_gemma":[0.9965996,0.00017222241,0.0010967576,0.00021964856,0.000022027396,0.0000075326525,0.000014414888,0.00002138613,0.0018464177],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99874204,0.00006976286,0.00033619415,0.0002077091,0.000038886326,0.0006053798],"domain_scores_gemma":[0.9992579,0.000050576095,0.00029031388,0.00033552744,0.00005435395,0.000011317654],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00061809056,0.00016369681,0.00024340756,0.00015213893,0.0016131107,0.000175463,0.00065272977,0.00014269218,0.00016121217],"category_scores_gemma":[0.00013626053,0.00014875387,0.00015268756,0.000048685655,0.00016457554,0.00033467266,0.00008867348,0.00030429492,0.000058027465],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080400734,0.00018477684,0.009094959,0.00002371429,0.00016550766,0.000046409663,0.0022849028,0.00015952611,0.098575816,0.0018714884,0.0028576923,0.8839312],"study_design_scores_gemma":[0.0394644,0.0005729948,0.16638075,0.0014913003,0.00017867154,0.0020928008,0.010468443,0.0014874197,0.037076063,0.022495048,0.7165615,0.0017306211],"about_ca_topic_score_codex":0.00015118503,"about_ca_topic_score_gemma":0.000013335228,"teacher_disagreement_score":0.8822006,"about_ca_system_score_codex":0.000059348884,"about_ca_system_score_gemma":0.0000866115,"threshold_uncertainty_score":0.99968666},"labels":[],"label_agreement":null},{"id":"W2742309548","doi":"10.14785/lymphosign-2017-0006","title":"The novel p.Gly306Asp perforin mutation causes Familial Hemophagocytic Lymphohistiocytosis type 2 (FHL-2) probably due to a critical role of Gly306 in the pore-forming perforin domain.","year":2017,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Instituto de Salud Carlos III; National Institutes of Health","keywords":"Perforin; Hemophagocytic lymphohistiocytosis; In silico; Biology; Mutation; Genetics; Phenotype; Immunology; Gene; Disease; Medicine; CD8; Immune system; Pathology","score_opus":0.025616280622319302,"score_gpt":0.3200063221392098,"score_spread":0.2943900415168905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2742309548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917401,0.0014022826,0.00088546175,0.0025512052,0.00036008123,0.00066115044,0.0000061204432,0.000015833122,0.0023777673],"genre_scores_gemma":[0.9981126,0.00018996933,0.0008024237,0.00025143844,0.000364643,0.00005582544,0.000004418524,0.000036414778,0.00018227445],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99716544,0.00012902202,0.0007839981,0.0002645977,0.0009766675,0.0006802604],"domain_scores_gemma":[0.99801767,0.00031933092,0.0002800592,0.00071568723,0.0004647105,0.00020252595],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001999673,0.00024897768,0.0004598427,0.0002026265,0.0016333127,0.00031378554,0.00080727664,0.00013875542,0.000056232817],"category_scores_gemma":[0.0020003933,0.00015189801,0.00017725026,0.00025955474,0.00040434866,0.0003758545,0.00014481066,0.0004575655,0.000034386558],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019580828,0.0034133114,0.09025126,0.0011676308,0.001000578,0.005040762,0.054643407,0.0006432002,0.44030225,0.039027292,0.005367655,0.33956182],"study_design_scores_gemma":[0.03652812,0.009764818,0.66152,0.0034018143,0.00079022284,0.040227115,0.089429505,0.022980547,0.07552657,0.017339155,0.04036483,0.0021272947],"about_ca_topic_score_codex":0.00029710485,"about_ca_topic_score_gemma":0.00005904645,"teacher_disagreement_score":0.57126874,"about_ca_system_score_codex":0.00047742555,"about_ca_system_score_gemma":0.0013844805,"threshold_uncertainty_score":0.99966645},"labels":[],"label_agreement":null},{"id":"W2748176046","doi":"10.14785/lymphosign-2017-0008","title":"National Immunoglobulin Replacement Expert Committee Recommendations","year":2017,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Intensive care medicine; Primary immunodeficiency; Immunodeficiency; Immunology; Family medicine; Immune system","score_opus":0.026320347432352093,"score_gpt":0.2979337635078271,"score_spread":0.27161341607547496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748176046","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2587184,0.2671231,0.03134136,0.08432123,0.050717786,0.001727856,0.0002394246,0.00064430124,0.30516654],"genre_scores_gemma":[0.9914623,0.0010167701,0.00034637927,0.0010020217,0.000040756266,0.000022450111,0.000053906133,0.00002033766,0.006035059],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986321,0.00014719724,0.0004785204,0.00021591027,0.00010380905,0.0004224959],"domain_scores_gemma":[0.99868935,0.000078275036,0.0004923438,0.0005207574,0.00020579832,0.000013452426],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00089971814,0.00019426168,0.00022258027,0.000107826374,0.0038909304,0.0002647427,0.0009054527,0.00015593118,0.00452579],"category_scores_gemma":[0.00025005586,0.00017464285,0.00017395525,0.00004578336,0.00027624334,0.00040343867,0.00015262405,0.00037946439,0.001196185],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008832842,0.001238473,0.0017529068,0.000010071404,0.0009675334,0.000022293858,0.0040090713,0.000045377987,0.22373292,0.011362883,0.5234709,0.23250434],"study_design_scores_gemma":[0.004673378,0.00019407028,0.009439565,0.00010228653,0.000023143417,0.0010033268,0.0011098474,0.000027049016,0.013010316,0.0025010037,0.9675381,0.00037790966],"about_ca_topic_score_codex":0.00009543217,"about_ca_topic_score_gemma":0.0000016653489,"teacher_disagreement_score":0.7327439,"about_ca_system_score_codex":0.00017220783,"about_ca_system_score_gemma":0.00026538954,"threshold_uncertainty_score":0.9995815},"labels":[],"label_agreement":null},{"id":"W2752056382","doi":"10.14785/lymphosign-2017-0011","title":"Chronic mucocutaneous candidiasis: a spectrum of genetic disorders","year":2017,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chronic mucocutaneous candidiasis; Candida albicans; Mucocutaneous zone; Immunology; Immunodeficiency; Medicine; Biology; Immune system; Dermatology; Disease; Pathology; Genetics","score_opus":0.010332375789548404,"score_gpt":0.26853068086659815,"score_spread":0.2581983050770498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752056382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865706,0.004647832,0.002166908,0.0014634212,0.00032824613,0.0001770081,0.0000043657647,0.000015299009,0.00462635],"genre_scores_gemma":[0.996462,0.0020183227,0.0004894087,0.00006242321,0.0005042694,0.0000021130056,7.438775e-7,0.000019074521,0.00044166797],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987809,0.000027578753,0.00034739173,0.00018078613,0.0003276815,0.00033564356],"domain_scores_gemma":[0.9987768,0.00002900475,0.00032458507,0.0005869475,0.00006207661,0.0002206173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002072741,0.00013793982,0.0003327801,0.000065692526,0.00038546292,0.00007599035,0.00026133453,0.00007797989,0.00043636447],"category_scores_gemma":[0.00016355615,0.0001096026,0.00021714387,0.000042425276,0.00023906169,0.00010854969,0.0000357031,0.00018530822,0.000024563844],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007380298,0.00021305647,0.8888381,0.0002029703,0.00025829938,0.0008237758,0.00042228503,0.000019286112,0.017790377,0.00018630222,0.0016557401,0.08885177],"study_design_scores_gemma":[0.0028401935,0.001180836,0.98241216,0.0003526412,0.00019177204,0.0023340608,0.00021410025,0.00024291183,0.0046617994,0.0033413847,0.0020267083,0.00020144873],"about_ca_topic_score_codex":0.00022080919,"about_ca_topic_score_gemma":0.0004972715,"teacher_disagreement_score":0.09357403,"about_ca_system_score_codex":0.00027164695,"about_ca_system_score_gemma":0.000684687,"threshold_uncertainty_score":0.4777885},"labels":[],"label_agreement":null},{"id":"W2784011661","doi":"10.14785/lymphosign-2017-0014","title":"Cartilage hair hypoplasia: Heterogeneity in clinical features and management among siblings","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Immune system; Medicine; Hematopoietic stem cell transplantation; Disease; Internal medicine; Pediatrics; Immunology","score_opus":0.01246502574335235,"score_gpt":0.26911739476404634,"score_spread":0.256652369020694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2784011661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776299,0.018743934,0.00022429565,0.0001571067,0.0013538426,0.00015004018,0.0000022383153,0.000032349904,0.0017063179],"genre_scores_gemma":[0.99744064,0.0014089996,0.00008732814,0.00037883339,0.000027072707,0.0000065906374,0.0000049321247,0.000015084498,0.0006305148],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99834406,0.00024644312,0.0005726908,0.000295899,0.00005425352,0.000486634],"domain_scores_gemma":[0.99946505,0.00006774973,0.00018351465,0.0002147839,0.000048738682,0.000020153466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009972736,0.00019278789,0.00030074222,0.00021225963,0.0004193482,0.00006600842,0.00027762167,0.0002498077,0.00009590901],"category_scores_gemma":[0.0000482757,0.0001635078,0.00013029826,0.00019385599,0.00068096,0.00017442676,0.00012441621,0.0004203221,0.00010390636],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024057862,0.0018275323,0.5370765,0.00011569268,0.00097125344,0.0006304911,0.0074289674,0.000030482082,0.14459938,0.0029362924,0.022662431,0.27931523],"study_design_scores_gemma":[0.0061420007,0.00057049096,0.9378292,0.00017961615,0.00007910151,0.001665386,0.0015249307,0.000015910486,0.029786034,0.0007553681,0.02102161,0.00043034978],"about_ca_topic_score_codex":0.00005845991,"about_ca_topic_score_gemma":0.000047050362,"teacher_disagreement_score":0.40075275,"about_ca_system_score_codex":0.000041753017,"about_ca_system_score_gemma":0.00003935056,"threshold_uncertainty_score":0.6667654},"labels":[],"label_agreement":null},{"id":"W2786353324","doi":"10.14785/lymphosign-2017-0010","title":"Advances in the diagnosis and management of Haemophagocytic Lymphohistiocytosis: A review of literature","year":2018,"lang":"en","type":"review","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Hemophagocytic lymphohistiocytosis; Modalities; Novelty; Medicine; Treatment modality; Therapeutic modalities; Intensive care medicine; Immunology; Pathology; Disease; Psychology; Physical therapy; Internal medicine","score_opus":0.04529666130892469,"score_gpt":0.3780788579632735,"score_spread":0.3327821966543488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2786353324","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000057347906,0.996754,0.000018825327,0.00009969848,0.00009979307,0.0012195648,0.000012393434,0.0000039714605,0.0017860102],"genre_scores_gemma":[0.00001044524,0.9991558,0.00021292063,0.00019299294,0.00011327875,0.00020983112,0.00001677326,0.000028422359,0.000059533028],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971064,0.00035899488,0.0013844247,0.00023647238,0.00064123585,0.00027250065],"domain_scores_gemma":[0.9982242,0.00016058573,0.00087802764,0.0004596457,0.00019932697,0.00007822184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016236807,0.00031258637,0.0020127778,0.00034398108,0.00006874807,0.000029964971,0.00043041204,0.00016171175,0.00009565858],"category_scores_gemma":[0.00012036843,0.000173403,0.00049665285,0.0008505445,0.00022379062,0.00014991865,0.00008868215,0.0003533418,0.0000065749587],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021418637,0.00009116016,0.00003127449,0.33932683,0.00015155984,0.00021191775,0.00012785028,1.4345333e-8,4.8991286e-8,0.000094171,0.0031826394,0.6567611],"study_design_scores_gemma":[0.00051375333,0.00017564863,0.00002818138,0.43922293,0.0007406088,0.0012933742,0.000056607874,6.99165e-7,0.0000010699204,0.0000562665,0.55782723,0.00008362361],"about_ca_topic_score_codex":0.0000020341047,"about_ca_topic_score_gemma":3.0867304e-7,"teacher_disagreement_score":0.6566775,"about_ca_system_score_codex":0.00016661994,"about_ca_system_score_gemma":0.0004920642,"threshold_uncertainty_score":0.7071169},"labels":[],"label_agreement":null},{"id":"W2797921111","doi":"10.14785/lymphosign-2018-0001","title":"C-reactive protein and other biomarkers—the sense and non-sense of using inflammation biomarkers for the diagnosis of severe bacterial infection","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Procalcitonin; Inflammation; Medicine; Biomarker; C-reactive protein; Bioinformatics; Intensive care medicine; Immunology; Biology; Sepsis","score_opus":0.022957249060100188,"score_gpt":0.27810355720643093,"score_spread":0.25514630814633077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2797921111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955732,0.00008591007,0.0030845155,0.00029654754,0.00025635667,0.00061701075,0.000019813253,0.0000056199956,0.000060977876],"genre_scores_gemma":[0.99878013,0.000047684436,0.0006356243,0.000042946765,0.00044098485,0.000023524479,9.599838e-7,0.000013494737,0.000014674057],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993782,0.000053977816,0.00025231647,0.000090475,0.00011404187,0.000111007896],"domain_scores_gemma":[0.99919343,0.00017120062,0.00029169608,0.00009156008,0.00019818085,0.000053941938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041039984,0.00009841435,0.00015230481,0.000091826325,0.00022249493,0.000030267554,0.000017079035,0.000059132162,0.00003104326],"category_scores_gemma":[0.00009719756,0.000055434757,0.00006649337,0.000109643326,0.00026180415,0.00012528633,0.00002321067,0.00005584982,5.0736037e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002524384,0.0000599981,0.03218411,0.00013674995,0.0006483925,0.000006874717,0.00097212463,0.0000030348488,0.9498302,0.000063661464,0.00020196493,0.013368515],"study_design_scores_gemma":[0.0056142956,0.0013018695,0.111862645,0.00091478653,0.0006817298,0.0075045656,0.0004361831,0.0020788037,0.8642933,0.00095245737,0.004164114,0.00019526653],"about_ca_topic_score_codex":0.0008726892,"about_ca_topic_score_gemma":0.000043573164,"teacher_disagreement_score":0.08553691,"about_ca_system_score_codex":0.000047361515,"about_ca_system_score_gemma":0.00006384222,"threshold_uncertainty_score":0.22605638},"labels":[],"label_agreement":null},{"id":"W2800702852","doi":"10.14785/lymphosign-2018-0004","title":"Chronic granulomatous disease due to different mutations in patients from the same consanguineous extended family","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chronic granulomatous disease; Primary immunodeficiency; Disease; Mutation; Medicine; Immunodeficiency; Genetics; Immunology; Biology; Gene; Pathology","score_opus":0.010397924768611275,"score_gpt":0.22711991542293186,"score_spread":0.21672199065432057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800702852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99329996,0.0018641247,0.0021340584,0.0007358055,0.0013431804,0.00037935388,0.0001479629,0.000033163422,0.00006241947],"genre_scores_gemma":[0.9973165,0.00003783138,0.00008534588,0.0019260455,0.00034060603,0.000035192556,0.000093860675,0.000026453388,0.00013821363],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99838233,0.00034675706,0.00039986728,0.00030005453,0.00009098955,0.00047998372],"domain_scores_gemma":[0.99909616,0.00018052699,0.0001379017,0.00031636906,0.00014771552,0.00012135427],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012829142,0.0002500328,0.00029668098,0.0001263676,0.0004794278,0.000060503804,0.00041680754,0.00009572281,0.00072765886],"category_scores_gemma":[0.00009026332,0.00016174269,0.00011137512,0.0001712823,0.00021665668,0.000080657504,0.00009620271,0.0002680853,0.00083668565],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020125727,0.0011114887,0.024100456,0.000010527192,0.00052528863,0.00057105185,0.0044463077,0.000026369687,0.8805665,0.002073531,0.018948069,0.065607846],"study_design_scores_gemma":[0.008550369,0.001590486,0.8813182,0.00025347061,0.00014777108,0.00018142106,0.00050492206,0.000017149994,0.09044061,0.011074359,0.00536777,0.00055348815],"about_ca_topic_score_codex":0.00012384323,"about_ca_topic_score_gemma":0.00011214325,"teacher_disagreement_score":0.8572177,"about_ca_system_score_codex":0.00025167028,"about_ca_system_score_gemma":0.00018365844,"threshold_uncertainty_score":0.9999413},"labels":[],"label_agreement":null},{"id":"W2800889208","doi":"10.14785/lymphosign-2018-0003","title":"Use of induced pluripotent stem cells to investigate the effects of purine nucleoside phosphorylase deficiency on neuronal development","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Biochemical and Molecular Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Induced pluripotent stem cell; Biology; Reprogramming; Purine nucleoside phosphorylase; Stem cell; Embryoid body; Cell biology; Embryonic stem cell; Immunology; Purine; Cell; Biochemistry; Enzyme","score_opus":0.024963607080380264,"score_gpt":0.2424599554337695,"score_spread":0.21749634835338924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2800889208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983474,0.00029800474,0.0007097078,0.00014572694,0.00020213776,0.00024194234,0.0000035024698,0.0000033146027,0.000048232458],"genre_scores_gemma":[0.99823266,0.00007290874,0.00091284484,0.00050307944,0.00010678104,0.000010591949,0.0000019057511,0.000021467924,0.0001377542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855417,0.000105606676,0.00034383425,0.00025072412,0.00041334672,0.00033233676],"domain_scores_gemma":[0.9990236,0.00004198085,0.00015068646,0.0003013576,0.00022616748,0.00025618015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023950567,0.00016697889,0.0001607766,0.00006584746,0.000124858,0.000031204323,0.00038388208,0.00009498291,0.000009494347],"category_scores_gemma":[0.00012962853,0.000112497,0.00010249777,0.00016157108,0.00017937759,0.000004215808,0.00022013644,0.00014228739,0.000012843767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002764551,0.00014581972,0.00011706879,0.000034902652,0.00004214934,0.000010568278,0.00013542404,0.000013754489,0.9878359,0.000029737499,0.0020676584,0.009290549],"study_design_scores_gemma":[0.0004892059,0.0016768611,0.0010640442,0.00009485406,0.000013160331,0.00003612464,0.00001683113,0.000011157784,0.9897521,0.000022976443,0.00669636,0.0001263246],"about_ca_topic_score_codex":0.000014510693,"about_ca_topic_score_gemma":0.0000028522652,"teacher_disagreement_score":0.009164224,"about_ca_system_score_codex":0.000031574407,"about_ca_system_score_gemma":0.00028264485,"threshold_uncertainty_score":0.45874947},"labels":[],"label_agreement":null},{"id":"W2803951488","doi":"10.14785/lymphosign-2018-0005","title":"Development of an ambulatory infusion protocol for Abatacept","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Abatacept; Medicine; Checklist; Protocol (science); Intensive care medicine; Novelty; Physical therapy; Internal medicine; Alternative medicine; Psychology; Pathology","score_opus":0.02271452453743908,"score_gpt":0.29946038755592036,"score_spread":0.27674586301848125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2803951488","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9156218,0.0009087011,0.029276948,0.00006121839,0.0016732601,0.05058503,0.000011331682,0.00009587702,0.0017658421],"genre_scores_gemma":[0.96165854,0.000002883541,0.0108020725,0.00024850428,0.00006358247,0.026396722,0.000038471582,0.000048805374,0.0007403991],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989176,0.000066178065,0.0004989804,0.00015010798,0.000048266236,0.00031888424],"domain_scores_gemma":[0.9993068,0.000026223406,0.00028701767,0.00018038476,0.000188382,0.000011197565],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056786824,0.00013841208,0.00019259383,0.00011057701,0.0006399427,0.000017425,0.000301322,0.00014632668,0.0006026905],"category_scores_gemma":[0.00003306252,0.0001118628,0.00008311406,0.00008712926,0.00022173273,0.00016779722,0.00004372791,0.000117238764,0.000079879326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006638641,0.0003224842,0.000064335065,0.000023975073,0.00006146128,5.948655e-7,0.0036569699,0.0000022149156,0.8262077,0.00026564376,0.0006644448,0.16806632],"study_design_scores_gemma":[0.0050197933,0.0007469554,0.002551817,0.000101445235,0.000012025779,0.0001528567,0.0008338001,0.000024023226,0.6028964,0.0003682997,0.38709342,0.00019915662],"about_ca_topic_score_codex":0.0000049875193,"about_ca_topic_score_gemma":0.0000014273247,"teacher_disagreement_score":0.38642898,"about_ca_system_score_codex":0.00004886679,"about_ca_system_score_gemma":0.0003926305,"threshold_uncertainty_score":0.6599038},"labels":[],"label_agreement":null},{"id":"W2885091654","doi":"10.14785/lymphosign-2018-0006","title":"Leukocyte adhesion deficiency-I caused by a novel mutation in <i>ITGB2</i> presenting with pyoderma gangrenosum","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Pyoderma gangrenosum; Medicine; Leukocyte adhesion deficiency; Umbilical cord; CD18; Cell adhesion molecule; Cord; Immunology; Immunodeficiency; Flow cytometry; Internal medicine; Surgery; Immune system; Disease","score_opus":0.011759790382135699,"score_gpt":0.24268473385093656,"score_spread":0.23092494346880085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885091654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98612756,0.000830969,0.0085839275,0.00053300435,0.0001648995,0.00025033098,0.000001589555,0.00004829221,0.0034594154],"genre_scores_gemma":[0.99772036,0.00007283554,0.000840391,0.00075513835,0.00018279624,0.000009134867,0.000011506607,0.000038720453,0.000369124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983688,0.00004301066,0.00048086146,0.0002293189,0.00044003292,0.00043796605],"domain_scores_gemma":[0.99918765,0.000033599474,0.00028199333,0.00019070582,0.00017455209,0.00013148393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037491674,0.00019196089,0.00026717328,0.00019759947,0.00024629416,0.000068714886,0.00012762999,0.00010161402,0.00010910399],"category_scores_gemma":[0.000065975924,0.00014892983,0.00006758087,0.00035029073,0.00013791407,0.00035118166,0.000026084419,0.0002403309,0.00004370956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002125495,0.0013873309,0.17469904,0.0002113085,0.00020842651,0.0012059569,0.011937625,0.00022781307,0.73839647,0.00020105705,0.053332288,0.016067214],"study_design_scores_gemma":[0.06726723,0.006646102,0.3167508,0.0027951372,0.00064333156,0.01552225,0.009211354,0.026429532,0.5059308,0.00067970104,0.045919728,0.0022040703],"about_ca_topic_score_codex":0.0000538173,"about_ca_topic_score_gemma":0.000018739644,"teacher_disagreement_score":0.23246568,"about_ca_system_score_codex":0.00018715509,"about_ca_system_score_gemma":0.0004213587,"threshold_uncertainty_score":0.6073182},"labels":[],"label_agreement":null},{"id":"W2888459931","doi":"10.14785/lymphosign-2018-0008","title":"Gastrointestinal defects and immunodeficiency syndrome with normal in vitro IgG production","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; McGill University Health Centre","funders":"","keywords":"Immunodeficiency; Immunology; Immune system; Antibody; Primary immunodeficiency; Peripheral blood mononuclear cell; Biology; Lymphocyte; B cell; Plasma cell; Cytokine; Severe combined immunodeficiency; Medicine; In vitro; In vivo","score_opus":0.004958537935063597,"score_gpt":0.19244033958648507,"score_spread":0.18748180165142148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2888459931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878116,0.0095411,0.0010182532,0.0001328299,0.00058900693,0.00015469719,0.0000021417914,0.00004059352,0.00070973724],"genre_scores_gemma":[0.9991985,0.000059181286,0.0003241504,0.000077526696,0.000013691019,0.000008559124,0.000008340168,0.00002005592,0.00028999342],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.9984702,0.00014197678,0.0003668734,0.00031019235,0.000073125506,0.00063764065],"domain_scores_gemma":[0.99943346,0.000038377202,0.00018861896,0.00020821099,0.00011658141,0.000014763579],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005555961,0.00023238591,0.00026619542,0.0002588428,0.00060267764,0.00005876213,0.00022955726,0.00007250971,0.00013545329],"category_scores_gemma":[0.00008052258,0.00018391066,0.00005447534,0.0003293223,0.0006485059,0.0003286478,0.000055963294,0.00042670933,0.000120615136],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012554403,0.00026715486,0.005517132,0.000014115269,0.000031773943,0.00015217278,0.0010132423,0.000020475627,0.9804374,0.00009689075,0.00007083633,0.011123369],"study_design_scores_gemma":[0.009784361,0.0053501297,0.18198499,0.00091170555,0.00011435486,0.44024372,0.0038875258,0.0000764664,0.3518865,0.00070566114,0.003914163,0.0011404213],"about_ca_topic_score_codex":0.00008470796,"about_ca_topic_score_gemma":0.0000044672684,"teacher_disagreement_score":0.6285509,"about_ca_system_score_codex":0.000081407845,"about_ca_system_score_gemma":0.00017513761,"threshold_uncertainty_score":0.7499659},"labels":[],"label_agreement":null},{"id":"W2889526955","doi":"10.14785/lymphosign-2018-0007","title":"Gene therapy for PNP deficiency protocol","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Genetic enhancement; Severe combined immunodeficiency; Adenosine deaminase deficiency; Hematopoietic stem cell transplantation; Transplantation; Viral vector; Immune system; Medicine; Purine nucleoside phosphorylase; Immunology; Salvage therapy; Stem cell; Purine; Biology; Internal medicine; Gene; Genetics","score_opus":0.030339292328898794,"score_gpt":0.3484591290594232,"score_spread":0.3181198367305244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889526955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91824216,0.0009968372,0.041115884,0.00047883342,0.0004316614,0.03702754,0.000023854793,0.000031480417,0.0016517323],"genre_scores_gemma":[0.9163987,0.00046500983,0.013658029,0.0036010467,0.009794533,0.05389484,0.00003981696,0.00021766561,0.0019303723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870616,0.00008230521,0.00023755524,0.00027344865,0.00023491553,0.00046560797],"domain_scores_gemma":[0.99907047,0.000011502668,0.000107031425,0.000315754,0.00033515895,0.00016009591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066620065,0.00015940159,0.000118838725,0.00006748009,0.000353507,0.00008562678,0.00041808374,0.00011759305,0.00017984975],"category_scores_gemma":[0.000045845765,0.00012750686,0.0001447193,0.000107141626,0.00014048463,0.000005249361,0.000041468862,0.00007874979,0.000032595515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005241733,0.000114173956,0.00025901434,0.000005001756,0.000039117214,0.0000025542895,0.00004700286,0.0000058512182,0.9357429,0.000012886961,0.010467074,0.048062705],"study_design_scores_gemma":[0.0033476006,0.0117484005,0.00011753508,0.000006712975,0.0000031925704,0.00017280308,0.00001480867,0.00005675207,0.8998201,0.00059470086,0.083947875,0.00016950326],"about_ca_topic_score_codex":0.0000020533957,"about_ca_topic_score_gemma":0.0000069744965,"teacher_disagreement_score":0.0734808,"about_ca_system_score_codex":0.000040370007,"about_ca_system_score_gemma":0.00044426633,"threshold_uncertainty_score":0.5199579},"labels":[],"label_agreement":null},{"id":"W2889527145","doi":"10.14785/lymphosign-2018-0010","title":"Physician–patient shared decision making in the treatment of primary immunodeficiency: an interview-based survey of immunologists","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Patient-Provider Communication in Healthcare","field":"Health Professions","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Novelty; Primary care; Family medicine; Psychology; Social psychology","score_opus":0.2842558824965184,"score_gpt":0.43917184839897194,"score_spread":0.15491596590245355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2889527145","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98584986,0.008835048,0.0027215213,0.00019187854,0.0007746962,0.0010161067,0.000074422096,0.000018932054,0.0005175149],"genre_scores_gemma":[0.99548906,0.00026835053,0.0031660467,0.0008708232,0.000049475915,0.00009103593,0.00004041557,0.000022833772,0.0000019585684],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9923734,0.004859347,0.0016152326,0.00022152833,0.000488603,0.00044187202],"domain_scores_gemma":[0.9942588,0.002020512,0.001530695,0.0011840862,0.00095230323,0.000053598906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001616857,0.00020229147,0.0004947315,0.00026928005,0.0006577713,0.000015954218,0.0010088644,0.00014621833,0.000097656564],"category_scores_gemma":[0.00030774614,0.00013398576,0.00011943085,0.00061997614,0.00023405884,0.00019925434,0.00010071597,0.00032709705,0.0000172181],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025936493,0.0035733352,0.3106433,0.00022567788,0.00006688187,0.000008412087,0.14514978,0.00011989102,0.002771547,0.0001305573,0.0005622776,0.5341547],"study_design_scores_gemma":[0.0027125117,0.004569068,0.978914,0.0020063242,0.000019455787,0.000008391775,0.008125064,0.0017351357,0.00051164214,0.0007196439,0.00050103955,0.00017769367],"about_ca_topic_score_codex":0.001754488,"about_ca_topic_score_gemma":0.00065995293,"teacher_disagreement_score":0.6682707,"about_ca_system_score_codex":0.0010858481,"about_ca_system_score_gemma":0.0010243573,"threshold_uncertainty_score":0.5463781},"labels":[],"label_agreement":null},{"id":"W2893825906","doi":"10.14785/lymphosign-2018-0011","title":"Epstein–Barr virus infection in primary immunodeficiency","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Primary immunodeficiency; Immunology; Hemophagocytic lymphohistiocytosis; Immune system; Disease; Immune dysregulation; Asymptomatic; Epstein–Barr virus; Epstein–Barr virus infection; Immunodeficiency; Virus; Medicine; Biology; Pathology","score_opus":0.008087525912911795,"score_gpt":0.2238313701454092,"score_spread":0.2157438442324974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2893825906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94797426,0.03194235,0.002761393,0.00010137286,0.0033144318,0.0001566703,0.00000396334,0.000077420074,0.013668115],"genre_scores_gemma":[0.9974183,0.0012177258,0.000039649483,0.00045037497,0.000032332107,0.000010357531,0.000017500884,0.000024848232,0.00078892463],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980757,0.00023882666,0.0006249972,0.00028256775,0.000082601546,0.00069531036],"domain_scores_gemma":[0.9992629,0.00005814467,0.00024250231,0.00030201426,0.00012224178,0.00001215832],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000836206,0.00024780454,0.00031877222,0.00037127358,0.0007108448,0.00006713338,0.00037429066,0.0002707808,0.0012014759],"category_scores_gemma":[0.000077268356,0.0002220665,0.00016161856,0.00047789916,0.0004389134,0.000359388,0.00008524112,0.0005298402,0.0015313283],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036688652,0.0005606269,0.0091387965,0.0000127582625,0.00007559246,0.000021835716,0.0022247483,0.00003321143,0.9105018,0.00054096605,0.0012547644,0.075268015],"study_design_scores_gemma":[0.013827632,0.0023043787,0.52383,0.00046740007,0.0001091569,0.0060518123,0.0009987415,0.00008533727,0.23719749,0.0044468525,0.20904239,0.0016387923],"about_ca_topic_score_codex":0.00069217244,"about_ca_topic_score_gemma":0.000018225186,"teacher_disagreement_score":0.6733043,"about_ca_system_score_codex":0.00026449043,"about_ca_system_score_gemma":0.0002716202,"threshold_uncertainty_score":0.9997116},"labels":[],"label_agreement":null},{"id":"W2894711866","doi":"10.14785/lymphosign-2017-0002","title":"Matched Related Donor Hematopoietic Stem Cell Transplantation Protocols for Patients with Primary Immunodeficiency","year":2017,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Hematopoietic stem cell transplantation; Primary immunodeficiency; Stem cell; Medicine; Transplantation; Immunodeficiency; Hematopoietic cell; Haematopoiesis; Immunology; Biology; Internal medicine; Genetics; Immune system","score_opus":0.008452499015947324,"score_gpt":0.22313961748642186,"score_spread":0.21468711847047453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2894711866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9783789,0.0041241874,0.006069425,0.00015411332,0.00086388015,0.007679658,0.00005438099,0.00008599465,0.002589479],"genre_scores_gemma":[0.9972942,0.00008605809,0.00016441992,0.000071265866,0.000004635144,0.0010603702,0.00010615079,0.000043689874,0.001169199],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982701,0.000102644895,0.00061849935,0.0003119022,0.00010610187,0.0005907745],"domain_scores_gemma":[0.9983309,0.0000759028,0.0008337546,0.00054245215,0.0002003591,0.000016617661],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00046706386,0.00029826735,0.0004099484,0.00010721835,0.0022087276,0.0002156139,0.00077994226,0.0002461019,0.00011279054],"category_scores_gemma":[0.000012297868,0.00022740258,0.00018732186,0.000068792615,0.0002738272,0.0004911365,0.000036593563,0.0003179625,0.000099837926],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019067073,0.008970724,0.057146985,0.0020746074,0.001310872,0.000087084234,0.0325233,0.00027873454,0.66818553,0.0027423913,0.0016959214,0.20591678],"study_design_scores_gemma":[0.14730203,0.009105328,0.582794,0.0031752756,0.0011780681,0.002695078,0.0044219284,0.000064536165,0.20959164,0.004595687,0.03095563,0.0041207587],"about_ca_topic_score_codex":0.000017605016,"about_ca_topic_score_gemma":3.3091004e-7,"teacher_disagreement_score":0.52564704,"about_ca_system_score_codex":0.00010117484,"about_ca_system_score_gemma":0.00023875858,"threshold_uncertainty_score":0.99909025},"labels":[],"label_agreement":null},{"id":"W2897075557","doi":"10.14785/lymphosign-2018-0013","title":"Update on effects of cleaning agents on allergy and asthma","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Occupational exposure and asthma","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University of Toronto","funders":"","keywords":"Asthma; Medicine; Environmental health; Atopy; Allergy; Adverse effect; Toxicology; Immunology; Internal medicine","score_opus":0.00981137098331886,"score_gpt":0.26535715794487463,"score_spread":0.2555457869615558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897075557","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942651,0.00020183568,0.0006906043,0.00036837193,0.00038468107,0.000088294175,0.000001133514,0.000011810887,0.0039881645],"genre_scores_gemma":[0.9961588,0.00015235094,0.00076607784,0.002021353,0.00073160935,0.0000010615908,0.000002547837,0.000015367854,0.00015088021],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9992043,0.000030228346,0.0001949202,0.000119504984,0.00029604958,0.00015504398],"domain_scores_gemma":[0.9994793,0.000058128397,0.00012163464,0.000101794394,0.000089938585,0.0001492162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001460503,0.00010299634,0.00017395326,0.000112949194,0.00009528666,0.000016368904,0.000050286035,0.000048888283,0.00013522989],"category_scores_gemma":[0.00005649073,0.00007795492,0.00005632593,0.000072591945,0.000054297252,0.00004838537,0.000015109088,0.00010629953,0.0000678806],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008485406,0.0016439046,0.035447437,0.00023507242,0.0013677482,0.0014212703,0.003917371,0.000047464295,0.08687439,0.010695091,0.114759214,0.73510563],"study_design_scores_gemma":[0.013968508,0.01949207,0.6679725,0.0038409217,0.00008586713,0.001980254,0.00014142791,0.0007450365,0.23416764,0.0021208709,0.055068217,0.00041666755],"about_ca_topic_score_codex":0.0000034472428,"about_ca_topic_score_gemma":6.126311e-7,"teacher_disagreement_score":0.73468894,"about_ca_system_score_codex":0.000038093065,"about_ca_system_score_gemma":0.000058344656,"threshold_uncertainty_score":0.31789094},"labels":[],"label_agreement":null},{"id":"W2905601218","doi":"10.14785/lymphosign-2018-0009","title":"Interleukin-2 receptor common gamma chain (IL2RG) defects present a diagnostic challenge","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Newborn Screening Ontario; University of Ottawa; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Severe combined immunodeficiency; Frameshift mutation; Sanger sequencing; Common gamma chain; Mutation; Genetics; Gene; Genetic testing; Genetic analysis; Biology; Medicine; Interleukin-21 receptor","score_opus":0.010919079239146472,"score_gpt":0.235391268135105,"score_spread":0.22447218889595852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2905601218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8906308,0.091631815,0.0016478763,0.0014285062,0.0065242597,0.00043158975,0.000015997462,0.00016602686,0.0075231656],"genre_scores_gemma":[0.996808,0.0012313629,0.000033469772,0.00038683732,0.00014150389,0.000028617118,0.000026793887,0.00004112974,0.0013022637],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99776167,0.00041583637,0.000566914,0.00033402993,0.00009650879,0.00082503224],"domain_scores_gemma":[0.9986902,0.00042613916,0.00030273054,0.00040837226,0.00013997445,0.000032589916],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006363674,0.00032695106,0.00040707304,0.00020235722,0.0008150803,0.00008033752,0.0006656161,0.00029074523,0.0024225174],"category_scores_gemma":[0.00027600318,0.0002765314,0.00024098516,0.00019829576,0.0005427565,0.0001955838,0.00015352284,0.00054166047,0.002831755],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016599782,0.0027366478,0.0036921685,0.00009016958,0.0011503828,0.00018173987,0.023979427,0.000029186836,0.51553786,0.005114386,0.09416639,0.35166165],"study_design_scores_gemma":[0.008490732,0.0037621849,0.0076356316,0.00073444564,0.00016793699,0.0025871603,0.0032328768,0.00006708837,0.13532242,0.0034250717,0.8333498,0.0012246127],"about_ca_topic_score_codex":0.00008850737,"about_ca_topic_score_gemma":0.000008887235,"teacher_disagreement_score":0.7391834,"about_ca_system_score_codex":0.00014569217,"about_ca_system_score_gemma":0.00014325451,"threshold_uncertainty_score":0.9999687},"labels":[],"label_agreement":null},{"id":"W2906080559","doi":"10.14785/lymphosign-2018-0015","title":"A novel homozygous mutation in CIITA resulting in MHC Class II deficiency in an adult patient","year":2018,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto; St. Michael's Hospital","funders":"","keywords":"CIITA; MHC class II; Immunology; Major histocompatibility complex; MHC class I; Primary immunodeficiency; Leukocyte adhesion deficiency; Biology; Immune dysregulation; Human leukocyte antigen; CD8; Immune system; Medicine; Antigen","score_opus":0.010238363170778196,"score_gpt":0.23725891027634868,"score_spread":0.22702054710557049,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2906080559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99300605,0.0042691603,0.0005228271,0.00016063736,0.00079180853,0.00020128324,0.0000059549225,0.000022526847,0.001019777],"genre_scores_gemma":[0.9993925,0.000051784817,0.00014858879,0.0002930089,0.000010741141,0.000016389029,0.000022286355,0.000018529443,0.00004615385],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99774534,0.00025242454,0.0008839575,0.00033337815,0.00008227811,0.0007026541],"domain_scores_gemma":[0.9992663,0.000069659014,0.0002828401,0.00022355278,0.00014382684,0.000013815945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007542572,0.00021407734,0.00028611883,0.00059957063,0.00040302446,0.000042855772,0.00035057255,0.00025598833,0.00007681516],"category_scores_gemma":[0.00023453379,0.0002030397,0.00006580213,0.00066115276,0.00021818688,0.00037895856,0.00007759372,0.00054772303,0.000057656423],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00125528,0.0034897865,0.0145824505,0.000018824307,0.000023430555,0.00023400517,0.071998775,0.0011854812,0.74931073,0.0012740378,0.00011102268,0.15651616],"study_design_scores_gemma":[0.082620196,0.014902916,0.64335316,0.0032001648,0.0000829524,0.014829932,0.11377446,0.012021734,0.09862982,0.006481525,0.0061273417,0.0039757905],"about_ca_topic_score_codex":0.000898606,"about_ca_topic_score_gemma":0.000661087,"teacher_disagreement_score":0.65068096,"about_ca_system_score_codex":0.00027936767,"about_ca_system_score_gemma":0.00022630345,"threshold_uncertainty_score":0.8279719},"labels":[],"label_agreement":null},{"id":"W2914170487","doi":"10.14785/lymphosign-2018-0012","title":"Chronic granulomatous disease 2018: advances in pathophysiology and clinical management","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chronic granulomatous disease; Medicine; Immunology; Disease; Genetic enhancement; Hematopoietic stem cell transplantation; Pathogenesis; Inflammation; Intensive care medicine; Clinical trial; Bioinformatics; Biology; Pathology; Gene","score_opus":0.006860935807283379,"score_gpt":0.2506742519286628,"score_spread":0.24381331612137938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914170487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95163554,0.04470202,0.000579683,0.00029605476,0.0018999751,0.00033028593,0.000009882976,0.000027097447,0.00051946944],"genre_scores_gemma":[0.9672525,0.031121062,0.00020298445,0.00054432754,0.0001573643,0.000014251943,0.000015066649,0.00002135704,0.0006711103],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.9983962,0.00032457284,0.00045393413,0.00035593164,0.000043214757,0.00042615784],"domain_scores_gemma":[0.9994179,0.0000920004,0.00015976472,0.00022358977,0.000025272968,0.00008149438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036346953,0.00019645845,0.00036281807,0.00014875438,0.000119495955,0.00002080115,0.00021761486,0.00012616366,0.00046886652],"category_scores_gemma":[0.000011408179,0.00015488612,0.00011201079,0.00009810025,0.00014691826,0.00021451963,0.00011356905,0.00030707332,0.0006995122],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002469918,0.00072950753,0.076868735,0.00024343503,0.0005217196,0.0015462944,0.00022481443,0.000055328605,0.35387793,0.026166942,0.0027660797,0.53452927],"study_design_scores_gemma":[0.04363656,0.0057194415,0.57051694,0.0013005986,0.00042306594,0.0017791189,0.00090019766,0.00009383438,0.024924435,0.09361043,0.25494882,0.0021465532],"about_ca_topic_score_codex":0.0000032488829,"about_ca_topic_score_gemma":0.00000426352,"teacher_disagreement_score":0.5323827,"about_ca_system_score_codex":0.00009216305,"about_ca_system_score_gemma":0.00006396703,"threshold_uncertainty_score":0.8991048},"labels":[],"label_agreement":null},{"id":"W2916452335","doi":"10.14785/lymphosign-2019-0003","title":"Report of the National Immunoglobulin Replacement Expert Committee: algorithm for diagnosis of immunodeficiency requiring antibody replacement therapy","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University; BC Children's Hospital; University of British Columbia; University of Manitoba; McGill University; Hospital for Sick Children; University of Toronto; Montreal Children's Hospital; Izaak Walton Killam Health Centre; Memorial University of Newfoundland; Janeway Children's Health and Rehabilitation Centre; SickKids Foundation; Dalhousie University; McMaster Children's Hospital; St. Michael's Hospital","funders":"","keywords":"Primary immunodeficiency; Medicine; Antibody; Immunodeficiency; Intensive care medicine; Immunology; Pediatrics; Algorithm; Immune system; Computer science","score_opus":0.016990049402463722,"score_gpt":0.2873817338323469,"score_spread":0.27039168442988315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916452335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.87941575,0.10100848,0.010438331,0.0006651479,0.004848681,0.0016176401,0.00007647724,0.000038708127,0.0018907582],"genre_scores_gemma":[0.99516165,0.0022151214,0.00076072325,0.00028949868,0.000017589346,0.00009014496,0.00005440902,0.00003398638,0.0013768725],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99719137,0.00023589515,0.0014248501,0.00035503495,0.00029972516,0.00049312576],"domain_scores_gemma":[0.99711937,0.0002797736,0.0014113048,0.0006285787,0.0005512381,0.000009710553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002248269,0.0002865106,0.00054014934,0.00015969691,0.00049788866,0.000028943927,0.00083578774,0.00019514562,0.00080450886],"category_scores_gemma":[0.00016429387,0.00020572262,0.00052081543,0.00029445937,0.00030584366,0.00018565608,0.0001561762,0.00029088717,0.000024046914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014622825,0.0017060617,0.01705569,0.00005107282,0.00096601265,0.0000034950754,0.0026289774,0.00020385448,0.91365993,0.0007754596,0.004406774,0.057080366],"study_design_scores_gemma":[0.016584544,0.0022202025,0.01652914,0.0007132428,0.0000793657,0.0020359138,0.002908111,0.0003113883,0.7859282,0.0007801632,0.17120673,0.00070303207],"about_ca_topic_score_codex":0.00009594305,"about_ca_topic_score_gemma":1.5860029e-7,"teacher_disagreement_score":0.16679995,"about_ca_system_score_codex":0.0001841416,"about_ca_system_score_gemma":0.00041901402,"threshold_uncertainty_score":0.8808808},"labels":[],"label_agreement":null},{"id":"W2917063005","doi":"10.14785/lymphosign-2019-0001","title":"Coronin 1A deficiency identified by newborn screening for severe combined immunodeficiency","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Severe combined immunodeficiency; Immunodeficiency; Hypogammaglobulinemia; Biology; Primary immunodeficiency; Sanger sequencing; Exome sequencing; Immunology; Mutation; Immunodeficiency Syndrome; Immune system; Virology; Antibody; Genetics; Gene","score_opus":0.008508274905008089,"score_gpt":0.2218671589301177,"score_spread":0.21335888402510964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917063005","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7733289,0.110146254,0.102844395,0.00045342292,0.0062304446,0.0013298102,0.00012540907,0.00023064965,0.0053107133],"genre_scores_gemma":[0.9888853,0.00025252366,0.00053070456,0.00040785066,0.0000115424145,0.000035167453,0.00020919269,0.00006429064,0.009603455],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970517,0.00018935156,0.00088997005,0.0005321801,0.00013778989,0.0011989857],"domain_scores_gemma":[0.9984514,0.00024797648,0.0005258508,0.0005205111,0.00022649032,0.000027765016],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010592627,0.0004371367,0.0005723373,0.0002200239,0.0012245744,0.0001962425,0.0010212553,0.00036139772,0.0014854758],"category_scores_gemma":[0.00010464843,0.0004001154,0.0004247902,0.0003556778,0.00022904213,0.00046956076,0.00012294005,0.0005581432,0.0008668677],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014016356,0.00065575197,0.0020458703,0.00005385494,0.00024222465,0.0000046509435,0.001390121,0.00030114158,0.8823595,0.002197525,0.018202666,0.09114506],"study_design_scores_gemma":[0.06518304,0.0063142055,0.0146106,0.0008509099,0.0005861507,0.0051870523,0.015162381,0.0012915444,0.100141145,0.006708027,0.7795175,0.0044474592],"about_ca_topic_score_codex":0.00008919259,"about_ca_topic_score_gemma":6.996943e-7,"teacher_disagreement_score":0.78221834,"about_ca_system_score_codex":0.00013567426,"about_ca_system_score_gemma":0.0002730102,"threshold_uncertainty_score":0.99991107},"labels":[],"label_agreement":null},{"id":"W2917430412","doi":"10.14785/lymphosign-2019-0002","title":"Establishing reference ranges for lymphocyte proliferation responses to phytohemagglutinin in patients with T cell dysfunction","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Reference range; Percentile; Lymphocyte; Medicine; Immunology; Stimulation; Immunodeficiency; Internal medicine; Immune system; Mathematics","score_opus":0.007018881530012907,"score_gpt":0.2034912963377735,"score_spread":0.1964724148077606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2917430412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99332726,0.0022459389,0.0022728527,0.00010208325,0.000791935,0.00070395105,0.000014413312,0.00002879125,0.000512791],"genre_scores_gemma":[0.9980838,0.000027354288,0.00025060374,0.0002604834,0.000008901147,0.00004623857,0.000063774074,0.000022405504,0.0012364964],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986848,0.00015914348,0.00035954246,0.00027411943,0.000080104306,0.00044228122],"domain_scores_gemma":[0.9992404,0.00016341353,0.00020502882,0.00019393416,0.00018367077,0.000013579355],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005856389,0.00018921448,0.00025532456,0.0002598785,0.00026082908,0.00008829379,0.00022366778,0.000150043,0.00011420325],"category_scores_gemma":[0.0001123716,0.000151566,0.00005199293,0.00023258147,0.000034873043,0.0004121125,0.00002913035,0.00020031593,0.00015046443],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.046133105,0.001523635,0.2822096,0.00014300174,0.0001525545,0.0000051631623,0.006885806,0.0018628583,0.562918,0.0004038167,0.001971686,0.095790796],"study_design_scores_gemma":[0.073359676,0.0076555214,0.59753454,0.00088326924,0.000112888345,0.00013691532,0.0034551462,0.00014837825,0.24694376,0.0004033984,0.06781578,0.001550756],"about_ca_topic_score_codex":0.000027944303,"about_ca_topic_score_gemma":0.0000032447629,"teacher_disagreement_score":0.31597424,"about_ca_system_score_codex":0.00018882527,"about_ca_system_score_gemma":0.0002539997,"threshold_uncertainty_score":0.6180682},"labels":[],"label_agreement":null},{"id":"W2942192434","doi":"10.14785/lymphosign-2018-0016","title":"Histamine, histamine receptors, and anti-histamines in the context of allergic responses","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Allergic Rhinitis and Sensitization","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Histamine; Histamine receptor; Histamine H4 receptor; Medicine; Histamine H2 receptor; Receptor; Context (archaeology); Histamine H1 receptor; Pharmacology; Immunology; Histamine antagonists; Immune system; Internal medicine; Biology","score_opus":0.014046862645699945,"score_gpt":0.24270588871681467,"score_spread":0.2286590260711147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942192434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930472,0.0027634779,0.0001663619,0.001744356,0.0003261648,0.00025137578,0.000004169891,0.000009624152,0.0016873045],"genre_scores_gemma":[0.99450946,0.0021014959,0.00033049268,0.0008294245,0.00013791144,0.0000021566614,0.000014712013,0.000018980843,0.0020553388],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985974,0.00016913925,0.00050214166,0.00016779675,0.00035783037,0.00020571527],"domain_scores_gemma":[0.99905354,0.0002420518,0.00024295333,0.00020879705,0.00017009687,0.00008256703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00065937976,0.00015221997,0.0003940137,0.00019935577,0.00006622726,0.000032227505,0.00010484704,0.00008524994,0.00021343879],"category_scores_gemma":[0.00016362125,0.000099773286,0.00007576407,0.0001982224,0.00010815936,0.00010752542,0.000018606028,0.00017264432,0.000009062345],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00650632,0.001362949,0.5910398,0.0005197315,0.0004132173,0.0020041496,0.032809492,0.00003662261,0.2146942,0.009288179,0.08077322,0.06055216],"study_design_scores_gemma":[0.023149945,0.0030554999,0.7198553,0.0016136924,0.00020214875,0.018261993,0.022148876,0.001985411,0.00630507,0.0005002275,0.20212215,0.00079966936],"about_ca_topic_score_codex":0.00005923376,"about_ca_topic_score_gemma":0.000016429383,"teacher_disagreement_score":0.20838913,"about_ca_system_score_codex":0.00010789995,"about_ca_system_score_gemma":0.00015169386,"threshold_uncertainty_score":0.40686366},"labels":[],"label_agreement":null},{"id":"W2944897172","doi":"10.14785/lymphosign-2019-0004","title":"Successful hematopoietic stem cell transplantation in a patient with a novel mutation in coronin 1A","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Children's Hospital of Eastern Ontario; SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Severe combined immunodeficiency; Biology; Immunodeficiency; Hematopoietic stem cell transplantation; Exome sequencing; Immunology; Stem cell; Mutation; Primary immunodeficiency; T cell; Transplantation; Cancer research; Genetics; Medicine; Internal medicine; Immune system; Gene","score_opus":0.004400518699063214,"score_gpt":0.18579242270876045,"score_spread":0.18139190400969724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2944897172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99111056,0.005499783,0.002045252,0.00005536789,0.0003217549,0.00026804765,0.0000060832135,0.000013795352,0.00067934406],"genre_scores_gemma":[0.999584,0.000115230825,0.000035117293,0.00009492013,0.0000012133434,0.000014270585,0.000025499368,0.000014880888,0.00011482934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884546,0.00011739718,0.00042579658,0.00019245196,0.00006654345,0.00035234596],"domain_scores_gemma":[0.99958575,0.000062790736,0.00019694881,0.0001147994,0.000032451833,0.0000072887174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023874037,0.00015942683,0.00023058873,0.00023131748,0.00008319932,0.000028600542,0.0001539665,0.00012926971,0.00015027575],"category_scores_gemma":[0.0000017585286,0.00013190033,0.000048524158,0.00025343188,0.000049697563,0.0002198889,0.000009457815,0.00029896383,0.00009683538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038246333,0.0020328066,0.0411923,0.000245933,0.00008581155,0.0005394474,0.06848494,0.016091527,0.83270913,0.0011684082,0.00002712676,0.033597905],"study_design_scores_gemma":[0.09810626,0.0072215735,0.21136557,0.0037478348,0.00020180042,0.037035428,0.1009996,0.0018193331,0.53319836,0.0009307278,0.0025995222,0.0027739697],"about_ca_topic_score_codex":0.00021206778,"about_ca_topic_score_gemma":0.000022762739,"teacher_disagreement_score":0.29951078,"about_ca_system_score_codex":0.00012631918,"about_ca_system_score_gemma":0.00015753867,"threshold_uncertainty_score":0.537874},"labels":[],"label_agreement":null},{"id":"W2946555506","doi":"10.14785/lymphosign-2019-0005","title":"A clinical trial protocol to evaluate the safety and pharmacokinetics of subcutaneously administered immunoglobulin in patients with primary immunodeficiency","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Primary immunodeficiency; Tolerability; Pharmacokinetics; Adverse effect; Clinical trial; Population; Protocol (science); Immunodeficiency; Clinical research; Antibody; Intensive care medicine; Pediatrics; Pharmacology; Immunology; Internal medicine; Pathology; Alternative medicine; Immune system","score_opus":0.012820998237412087,"score_gpt":0.2914420075128057,"score_spread":0.2786210092753936,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946555506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97031647,0.0015768436,0.00013798279,0.00013132597,0.00080304645,0.026356548,0.0000143537145,0.000014641018,0.0006487688],"genre_scores_gemma":[0.99818766,0.00006319472,0.00008553933,0.00034771205,0.000008559681,0.0010179217,0.00001533937,0.000028107786,0.00024594154],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.99679834,0.0007004386,0.0014390884,0.0003471723,0.00019249538,0.0005224716],"domain_scores_gemma":[0.9985653,0.00029080219,0.0004717114,0.00045258953,0.00019905725,0.00002051619],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020554904,0.00029047087,0.00063475035,0.00015258248,0.0002375352,0.000044369805,0.00063281774,0.00018498671,0.00031316114],"category_scores_gemma":[0.00010399089,0.00017946489,0.00015505662,0.00032920318,0.00032700683,0.00012028105,0.00017043263,0.00059771544,0.00008133492],"study_design_candidate":"randomized_trial","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.684002,0.0045388527,0.092205055,0.00012756855,0.0005895823,0.000022088738,0.0035968432,0.00033194912,0.037667703,0.0001990303,0.00020711492,0.17651221],"study_design_scores_gemma":[0.4305373,0.023323085,0.5061537,0.00061490026,0.00021707718,0.0005461418,0.00085506483,0.00005312808,0.0018874776,0.00013194709,0.03473666,0.00094352296],"about_ca_topic_score_codex":0.000026579382,"about_ca_topic_score_gemma":7.2836235e-7,"teacher_disagreement_score":0.41394863,"about_ca_system_score_codex":0.00008941103,"about_ca_system_score_gemma":0.00042819805,"threshold_uncertainty_score":0.73183656},"labels":[],"label_agreement":null},{"id":"W2946803542","doi":"10.14785/lymphosign-2019-0006","title":"Novel heterozygous <i>NFKB1</i> mutation in a pediatric patient with cytopenias, splenomegaly, and lymphadenopathy","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"NF-κB Signaling Pathways","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Common variable immunodeficiency; Missense mutation; Immunology; Medicine; Immune system; Antibody; Mutation; Biology; Gene; Genetics","score_opus":0.004142012027449782,"score_gpt":0.18362546611616443,"score_spread":0.17948345408871463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2946803542","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939668,0.001748493,0.0034639945,0.000046604902,0.00017070447,0.0002376819,0.000008498435,0.000008704765,0.00034847355],"genre_scores_gemma":[0.9968423,0.00025369355,0.0021875596,0.00035467042,0.00023132427,0.00001207224,0.000018624984,0.000039044207,0.00006070072],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99871415,0.000053215786,0.0003197817,0.00035078844,0.00023330099,0.00032876723],"domain_scores_gemma":[0.9993429,0.000016153135,0.00021266857,0.00020574791,0.00008162076,0.00014086811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023874722,0.00020635065,0.00019863853,0.00013236632,0.00007189876,0.000091006936,0.0001558434,0.00011841532,0.000013961209],"category_scores_gemma":[0.000020644044,0.00017624856,0.00004960797,0.00015052795,0.000031023977,0.000017009439,0.00006800293,0.000112481044,0.000013463117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005942941,0.00023628176,0.066790886,0.000046905956,0.00004582993,0.0002816333,0.00065449695,0.0012753346,0.92464286,0.00003368845,0.0002288128,0.0051689823],"study_design_scores_gemma":[0.046778474,0.019336607,0.09135123,0.00050366233,0.00034819992,0.08088628,0.0015292189,0.0018063108,0.74073803,0.00059358444,0.01225961,0.0038688008],"about_ca_topic_score_codex":0.000020991,"about_ca_topic_score_gemma":0.000017352355,"teacher_disagreement_score":0.18390484,"about_ca_system_score_codex":0.00007289386,"about_ca_system_score_gemma":0.00021315347,"threshold_uncertainty_score":0.7187208},"labels":[],"label_agreement":null},{"id":"W2947963522","doi":"10.14785/lymphosign-2019-0007","title":"Chronic mucocutaneous candidiasis associated with a novel frameshift mutation in IL-17 receptor alpha","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chronic mucocutaneous candidiasis; Frameshift mutation; Mucocutaneous zone; Candida albicans; Mutation; Immune system; Biology; Immunology; Medicine; Exome sequencing; Sanger sequencing; Genetics; Pathology; Disease; Gene","score_opus":0.005227578110816915,"score_gpt":0.1987721908840284,"score_spread":0.19354461277321147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2947963522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9825606,0.014059888,0.00086184085,0.00021253442,0.0009798651,0.00028711566,0.00003537193,0.00005282816,0.0009499867],"genre_scores_gemma":[0.997947,0.00014235545,0.000034287074,0.00021276971,0.00001224853,0.000012890337,0.00010188991,0.000031019525,0.0015055407],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99839324,0.00014917045,0.00044515717,0.00027771012,0.00009487872,0.0006398365],"domain_scores_gemma":[0.99918056,0.00016708871,0.0003351074,0.00020920174,0.00009252842,0.000015495918],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004347684,0.00025013476,0.0003717382,0.00022849513,0.00025442406,0.00007004609,0.0003045302,0.00031410367,0.0016967084],"category_scores_gemma":[0.00007549503,0.00020790249,0.00011157932,0.00036175034,0.00013166376,0.00025747687,0.0000295826,0.00058010867,0.00036579918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012212908,0.00115329,0.0128484415,0.00003020837,0.0009642189,0.00019034966,0.009977325,0.0023649507,0.9001636,0.00045911002,0.0011630208,0.06946419],"study_design_scores_gemma":[0.16314013,0.020485863,0.2976691,0.0069015445,0.00097298855,0.032927737,0.03901108,0.0025733972,0.22769113,0.0019188549,0.19814017,0.008567971],"about_ca_topic_score_codex":0.00034843315,"about_ca_topic_score_gemma":0.000076438584,"teacher_disagreement_score":0.6724725,"about_ca_system_score_codex":0.00060534925,"about_ca_system_score_gemma":0.0005395504,"threshold_uncertainty_score":0.9992159},"labels":[],"label_agreement":null},{"id":"W2969414401","doi":"10.14785/lymphosign-2019-0010","title":"Novel heterozygous <i>NFKB1</i> mutation—variable penetrance in a family cohort","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Common variable immunodeficiency; Frameshift mutation; Penetrance; Mutation; Genetics; Biology; Loss function; Phenotype; Variable Expression; Gene; Antibody","score_opus":0.005466325530286171,"score_gpt":0.1973795811896728,"score_spread":0.19191325565938663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969414401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95215183,0.027695488,0.008554244,0.00009638633,0.002476403,0.000334386,0.000011937583,0.00004706797,0.0086322725],"genre_scores_gemma":[0.99697953,0.00021626374,0.0002840608,0.0007712968,0.000008197911,0.000015259982,0.000027243894,0.000024017449,0.0016741493],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984291,0.00010595178,0.00052121293,0.00028400467,0.00008017048,0.0005795463],"domain_scores_gemma":[0.99936795,0.000091290094,0.00019530542,0.00025874423,0.00007484479,0.0000118855605],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006233794,0.00021493857,0.00034197542,0.00018249542,0.00021808027,0.00005829306,0.00039913433,0.00021351094,0.00066845247],"category_scores_gemma":[0.00003466198,0.00019979119,0.0001127135,0.00031606908,0.00009628027,0.00027376777,0.000039019615,0.0004641407,0.00092180195],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002044414,0.00032477416,0.0112320455,0.0000144879705,0.000105238425,0.00002130971,0.00065686746,0.0015260876,0.9792942,0.00073841686,0.0004698791,0.0054122903],"study_design_scores_gemma":[0.05594597,0.0017336998,0.6056085,0.0011250476,0.00021170423,0.020106297,0.0051895673,0.0011289457,0.07715678,0.004654716,0.22399198,0.0031467937],"about_ca_topic_score_codex":0.00029502966,"about_ca_topic_score_gemma":0.0000022319116,"teacher_disagreement_score":0.9021374,"about_ca_system_score_codex":0.000118975084,"about_ca_system_score_gemma":0.00024041075,"threshold_uncertainty_score":0.9998561},"labels":[],"label_agreement":null},{"id":"W2969615585","doi":"10.14785/lymphosign-2019-0012","title":"Strategies for managing paediatric patients in immunoglobulin clinical trials","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Clinical trial; Medicine; Protocol (science); Novelty; Food and drug administration; Tolerability; Documentation; Intensive care medicine; Alternative medicine; Medical emergency; Psychology; Internal medicine; Pathology; Computer science","score_opus":0.035237706486122455,"score_gpt":0.3320303454117226,"score_spread":0.29679263892560015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969615585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9477755,0.039027207,0.0032509395,0.00019022587,0.006811777,0.00088030467,0.00001913766,0.000041101004,0.0020038425],"genre_scores_gemma":[0.99808645,0.0010458387,0.000096144475,0.00024322474,0.000029215056,0.000020497408,0.000051633233,0.00002271984,0.00040428937],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99652714,0.00094529433,0.0015961844,0.00028442335,0.00006316514,0.00058380264],"domain_scores_gemma":[0.9980415,0.0009766805,0.00062236446,0.00023797991,0.00010935778,0.0000121218245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005956147,0.00022070308,0.0007401356,0.00026050463,0.00021633664,0.00009770992,0.00044376895,0.00029884788,0.00043406003],"category_scores_gemma":[0.000444965,0.0001808457,0.00047755914,0.00021935198,0.00008856088,0.00031808182,0.00005743693,0.00047273163,0.00042708308],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005833279,0.0027745548,0.24188441,0.00014616802,0.0009685522,0.000017682221,0.003086871,0.00089022337,0.027170977,0.012255227,0.010088413,0.69488364],"study_design_scores_gemma":[0.14595476,0.0057979324,0.50843245,0.0007879851,0.00058695395,0.00038492674,0.027278194,0.0006935558,0.0031720237,0.069348045,0.23454803,0.0030151133],"about_ca_topic_score_codex":0.00004609606,"about_ca_topic_score_gemma":0.0000012374876,"teacher_disagreement_score":0.69186854,"about_ca_system_score_codex":0.00008099851,"about_ca_system_score_gemma":0.00031588355,"threshold_uncertainty_score":0.7374674},"labels":[],"label_agreement":null},{"id":"W2969757918","doi":"10.14785/lymphosign-2019-0009","title":"Histopathological features of patients with chronic granulomatous disease","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Chronic granulomatous disease; Primary immunodeficiency; Inflammation; Medicine; Granuloma; NADPH oxidase; Nicotinamide adenine dinucleotide phosphate; Immunodeficiency; Pathological; Granulomatous inflammation; Phagocyte; Pathology; Differential diagnosis; Immunology; Spleen; Immune dysregulation; Disease; Immune system; Oxidase test; Internal medicine; Biology","score_opus":0.004018242467040029,"score_gpt":0.18367956981978795,"score_spread":0.17966132735274792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969757918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99507064,0.003213553,0.0005111384,0.000059973114,0.00058279734,0.0002255536,0.000033397573,0.000025087304,0.00027787892],"genre_scores_gemma":[0.9988863,0.000077950135,0.00014218588,0.00016495452,0.000041125048,0.000005774805,0.000042621024,0.00001856381,0.00062053447],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989633,0.00014916869,0.0002513609,0.00022450395,0.00008503379,0.00032663284],"domain_scores_gemma":[0.9993084,0.00004233468,0.00021996585,0.00023482765,0.00012796343,0.00006649423],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012611446,0.00019067038,0.00031016427,0.00010238967,0.00013180217,0.000014163923,0.00025323083,0.00010605407,0.0010567443],"category_scores_gemma":[0.000016140331,0.00012035854,0.00011266893,0.00009481328,0.00014050369,0.00011051115,0.000048167225,0.00024974355,0.00025678056],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004329644,0.0009477882,0.20497955,0.00008705026,0.0002891642,0.00023400788,0.0003233555,0.00003093002,0.7647651,0.0060943356,0.0051754043,0.012743672],"study_design_scores_gemma":[0.0100949835,0.0029499594,0.8346499,0.00020350394,0.00014135605,0.00045195268,0.0000514345,9.4904175e-7,0.13917917,0.0015139452,0.010290192,0.00047263026],"about_ca_topic_score_codex":0.0000038647777,"about_ca_topic_score_gemma":0.0000010274249,"teacher_disagreement_score":0.6296704,"about_ca_system_score_codex":0.00011703884,"about_ca_system_score_gemma":0.00015702989,"threshold_uncertainty_score":0.9998564},"labels":[],"label_agreement":null},{"id":"W2970966292","doi":"10.14785/lymphosign-2019-0011","title":"New considerations in hematopoietic stem cell transplantation for severe combined immunodeficiency: how did newborn screening change our field, and can we finally brake the glass ceiling for haploidentical transplantation?","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Transplantation; Hematopoietic stem cell transplantation; Severe combined immunodeficiency; Stem cell; Newborn screening; Disease; Intensive care medicine; Immunology; Pediatrics; Surgery; Internal medicine; Biology","score_opus":0.018320970535438862,"score_gpt":0.23368552449468483,"score_spread":0.21536455395924597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2970966292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7202179,0.024969257,0.23196553,0.0189366,0.0014495752,0.0022217892,0.000120774115,0.000053175754,0.000065433414],"genre_scores_gemma":[0.99686486,0.00096542545,0.0009321406,0.00049013423,0.000017199996,0.000075164935,0.00006787287,0.000025108346,0.0005620968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857235,0.0001405986,0.0004596349,0.00027480503,0.00006989493,0.00048272163],"domain_scores_gemma":[0.99889797,0.00063239824,0.00020427522,0.00016007388,0.00008562907,0.000019651829],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048565434,0.00023494076,0.00032569154,0.00012106215,0.0007117969,0.00017665929,0.00021767702,0.00020192823,0.000032154985],"category_scores_gemma":[0.000020826137,0.00019132829,0.00016389303,0.00012458133,0.00004535637,0.00028004133,0.000013582347,0.00030536612,0.000005595079],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0072360644,0.00087318267,0.011493164,0.0019650625,0.00068082474,0.00006758102,0.14579344,0.0019121582,0.5955805,0.01666163,0.0018378624,0.21589854],"study_design_scores_gemma":[0.21683669,0.0119455885,0.11193504,0.006883986,0.0037486237,0.024965622,0.20750445,0.010921074,0.3254062,0.050162144,0.022587933,0.007102631],"about_ca_topic_score_codex":0.00010863104,"about_ca_topic_score_gemma":0.000060637754,"teacher_disagreement_score":0.276647,"about_ca_system_score_codex":0.000036494836,"about_ca_system_score_gemma":0.00023507308,"threshold_uncertainty_score":0.78021413},"labels":[],"label_agreement":null},{"id":"W2983015133","doi":"10.14785/lymphosign-2019-0017","title":"Precision medicine applications for severe asthma","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Asthma and respiratory diseases","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Mepolizumab; Benralizumab; Dupilumab; Omalizumab; Medicine; Asthma; Intensive care medicine; Precision medicine; Exhaled nitric oxide; Clinical trial; Immunology; Eosinophil; Immunoglobulin E; Internal medicine; Pathology","score_opus":0.011807135310341197,"score_gpt":0.2870215636943239,"score_spread":0.2752144283839827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2983015133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.50268227,0.016373938,0.4259423,0.009576645,0.0024375063,0.0071987677,0.000067968496,0.00029452302,0.03542609],"genre_scores_gemma":[0.9793853,0.00022761493,0.0061650584,0.003440921,0.003481868,0.00014536158,0.000037561407,0.0000683155,0.007047997],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989826,0.000022285627,0.00029524084,0.00017931142,0.00030169028,0.00021885707],"domain_scores_gemma":[0.9990021,0.000108552245,0.00013479432,0.000232041,0.00020612024,0.0003163831],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00024614486,0.00012453996,0.00025528463,0.00011535697,0.00014932372,0.000018512957,0.00011488562,0.00007667961,0.0010695297],"category_scores_gemma":[0.000058360474,0.00008233389,0.00014817405,0.00013261179,0.00004640144,0.000084915286,0.000016351616,0.00010787579,0.00019201146],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002050318,0.00055983034,0.04034614,0.00037772304,0.00020770554,0.00006152731,0.00044311106,0.00009908843,0.03961824,0.0027773848,0.18199396,0.731465],"study_design_scores_gemma":[0.007301548,0.0016659407,0.017578637,0.00039986335,0.00011409663,0.0022170246,0.00041329366,0.00037701023,0.00078616553,0.002379993,0.9665695,0.00019695386],"about_ca_topic_score_codex":0.0000012100226,"about_ca_topic_score_gemma":2.0895611e-7,"teacher_disagreement_score":0.7845755,"about_ca_system_score_codex":0.00009177917,"about_ca_system_score_gemma":0.00024478039,"threshold_uncertainty_score":0.99984366},"labels":[],"label_agreement":null},{"id":"W2985329800","doi":"10.14785/lymphosign-2019-0014","title":"Transcervical thymic biopsy in the immunodeficient child","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Biopsy; Immunodeficiency; Otorhinolaryngology; Complication; Primary immunodeficiency; Human immunodeficiency virus (HIV); Surgery; Pediatrics; Pathology; Immunology; Disease; Immune system","score_opus":0.004504998692472064,"score_gpt":0.19808144329733132,"score_spread":0.19357644460485926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2985329800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92617404,0.058081094,0.0003375384,0.0015005784,0.0017640073,0.00028587822,0.0000053774047,0.000031506897,0.011819973],"genre_scores_gemma":[0.99838483,0.00028698676,0.000009296192,0.00095716905,0.000008601019,0.000009638176,0.000017108361,0.000017121829,0.0003092201],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99821097,0.00033027396,0.0004939724,0.00023920949,0.000104071434,0.0006215237],"domain_scores_gemma":[0.9993262,0.000104525374,0.00013501449,0.00039255235,0.000034846806,0.000006820654],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010099967,0.00022353986,0.0002791566,0.00017302687,0.00042449284,0.00007642003,0.00088429736,0.00020178403,0.0015335063],"category_scores_gemma":[0.000018428327,0.0001435214,0.0002404112,0.00036485284,0.00015554248,0.0001404346,0.000034066252,0.00080670265,0.0018160356],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001338989,0.0029138282,0.014022315,0.000069229936,0.00041949045,0.00014536192,0.035948224,0.0009266923,0.84888,0.020074202,0.0017413828,0.07352028],"study_design_scores_gemma":[0.029785503,0.0015929611,0.4432029,0.0008286299,0.00020739208,0.045820363,0.03940493,0.00026988806,0.022690088,0.0043263086,0.40959713,0.0022739053],"about_ca_topic_score_codex":0.000080111975,"about_ca_topic_score_gemma":0.0000010637476,"teacher_disagreement_score":0.82618994,"about_ca_system_score_codex":0.000069160546,"about_ca_system_score_gemma":0.0000978807,"threshold_uncertainty_score":0.9993792},"labels":[],"label_agreement":null},{"id":"W2987241876","doi":"10.14785/lymphosign-2019-0008","title":"Serum sickness-like reaction to a second generation antipsychotic drug","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Drug-Induced Adverse Reactions","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Medicine; Maculopapular rash; Serum sickness; Rash; Risperidone; Angioedema; Hypersensitivity reaction; Monoarthritis; Immunology; Internal medicine; Population; Dermatology; Arthritis; Gastroenterology; Antibody; Psychiatry","score_opus":0.016908347340399924,"score_gpt":0.2670461597504144,"score_spread":0.2501378124100145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987241876","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97740716,0.00006823754,0.0009829529,0.0017594399,0.003926027,0.00044476084,0.0000049572595,0.000072612296,0.015333883],"genre_scores_gemma":[0.98473084,0.00003902025,0.0011188369,0.0018896939,0.0013229885,0.0000088939205,0.0000127881995,0.000047944683,0.010828995],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99851626,0.000055752582,0.00036645896,0.00029479398,0.00040916045,0.00035759903],"domain_scores_gemma":[0.9988448,0.00003439701,0.000172935,0.00034836426,0.00019445996,0.0004050391],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00036687788,0.00019342416,0.00028273216,0.00033648915,0.00017229735,0.00008798376,0.000095098556,0.00009673745,0.00035988996],"category_scores_gemma":[0.000031691034,0.00017500097,0.00015095195,0.00034754103,0.000014687897,0.0004241523,0.000017940889,0.00034428824,0.0019406055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006284957,0.00018828576,0.0024249204,0.000030205754,0.00011800618,0.00007918831,0.00066776766,0.000103150014,0.9574432,0.000115933864,0.010614072,0.028152421],"study_design_scores_gemma":[0.013186509,0.00045009892,0.29673824,0.000766624,0.000519288,0.029863048,0.0025445176,0.0030325677,0.115205385,0.00050463824,0.5360218,0.0011672592],"about_ca_topic_score_codex":0.000017519984,"about_ca_topic_score_gemma":0.000026091084,"teacher_disagreement_score":0.84223783,"about_ca_system_score_codex":0.00052864745,"about_ca_system_score_gemma":0.00031021863,"threshold_uncertainty_score":0.9988365},"labels":[],"label_agreement":null},{"id":"W2995304237","doi":"10.14785/lymphosign-2019-0013","title":"Primary antibody deficiency associated with ring chromosome 18","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Children's Hospital; McGill University Health Centre","funders":"","keywords":"Common variable immunodeficiency; Antibody; Immunology; Primary immunodeficiency; Autoimmunity; Immunodeficiency; Biology; Chromosome; Immune system; Medicine; Genetics; Gene","score_opus":0.007138503250107492,"score_gpt":0.2155271243608749,"score_spread":0.20838862111076742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995304237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95457846,0.023727752,0.00077359634,0.00006199448,0.0012214581,0.00018750134,0.000006751278,0.00009248649,0.019350024],"genre_scores_gemma":[0.9969869,0.00016696614,0.000027867138,0.00028308475,0.000008008874,0.0000037834327,0.00007669433,0.000032111282,0.002414571],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99831784,0.00016064984,0.0004043873,0.0002867232,0.00011297512,0.00071740005],"domain_scores_gemma":[0.999167,0.00010597245,0.0003183168,0.0002830441,0.000110313325,0.00001530165],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005524068,0.0002594336,0.00038388328,0.00016733166,0.00053860515,0.00007445335,0.00045693535,0.00021219642,0.0018557885],"category_scores_gemma":[0.000048267026,0.00019956533,0.00014275862,0.00032695476,0.00018395169,0.0003067424,0.00006636963,0.0005060815,0.0009820999],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020071353,0.00045259815,0.016767116,0.000020001904,0.00023618182,0.000039367264,0.0007836853,0.00014419931,0.97470236,0.0005000331,0.00038843908,0.0057652993],"study_design_scores_gemma":[0.046970274,0.005783136,0.74418515,0.0026647875,0.00060899334,0.014073082,0.005151732,0.00020390199,0.11510269,0.0018547922,0.059164986,0.004236443],"about_ca_topic_score_codex":0.000021741069,"about_ca_topic_score_gemma":3.8999215e-7,"teacher_disagreement_score":0.85959965,"about_ca_system_score_codex":0.00017970391,"about_ca_system_score_gemma":0.0003046815,"threshold_uncertainty_score":0.99979573},"labels":[],"label_agreement":null},{"id":"W3003749882","doi":"10.14785/lymphosign-2019-0018","title":"Microbiota-immune interactions: from gut to brain","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Immune system; Gut–brain axis; Gut flora; Dysbiosis; Biology; Neuroinflammation; Neuroscience; Neuroimmunology; Immunity; Immunology; Inflammation","score_opus":0.015477426590298516,"score_gpt":0.2653095132858755,"score_spread":0.24983208669557697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003749882","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94205844,0.0023524824,0.022497293,0.03130884,0.0008647135,0.0002100308,0.00007796118,0.000023279033,0.00060694525],"genre_scores_gemma":[0.9573388,0.00020650585,0.00710668,0.03274546,0.0018886632,0.0000050363606,0.000103342754,0.00004030215,0.00056517206],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99901676,0.00006641412,0.00030691255,0.00026141485,0.00007341921,0.00027507878],"domain_scores_gemma":[0.9992883,0.00001481498,0.00010725021,0.00018008357,0.000074807314,0.00033473494],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011681505,0.00014808126,0.00016360103,0.000038430877,0.0001592431,0.00008683534,0.00026970258,0.0000891052,0.0003492453],"category_scores_gemma":[0.000093021095,0.00014027358,0.00012683669,0.00010162367,0.000021276697,0.000005992027,0.00010099438,0.00016929685,0.00028176393],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012430255,0.000025565852,0.00021786669,0.0000036235035,0.000045159042,0.000009725525,0.00029048912,0.000011887612,0.83580774,0.0000075105836,0.16142552,0.002030587],"study_design_scores_gemma":[0.0010972933,0.00042234172,0.0044970606,0.00004651715,0.000019038675,0.00033031404,0.00022266836,0.000021199858,0.2770756,0.000052718176,0.71595085,0.00026441223],"about_ca_topic_score_codex":0.000047408193,"about_ca_topic_score_gemma":0.000014916743,"teacher_disagreement_score":0.55873215,"about_ca_system_score_codex":0.00004474462,"about_ca_system_score_gemma":0.0001801074,"threshold_uncertainty_score":0.57201904},"labels":[],"label_agreement":null},{"id":"W3003897208","doi":"10.14785/lymphosign-2019-0016","title":"The psychological effects of systemic lupus erythematosus: the imitator of aging","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Systemic Lupus Erythematosus Research","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Anxiety; Medicine; Psychosocial; Feeling; Clinical psychology; Psychiatry; Psychology","score_opus":0.026426305067275686,"score_gpt":0.3024469204230524,"score_spread":0.2760206153557767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003897208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97285914,0.01959551,0.0018999114,0.003603162,0.00077449455,0.00077965396,0.0000019143463,0.000030996212,0.00045520763],"genre_scores_gemma":[0.997212,0.0016357893,0.00021088467,0.0003212589,0.00045929285,0.00002408786,4.0236824e-7,0.00003511429,0.00010117008],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99697787,0.00044752733,0.0008923192,0.00022029447,0.0010144057,0.00044760582],"domain_scores_gemma":[0.99657744,0.0017367157,0.0005581155,0.0004930152,0.0003257429,0.00030894406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00142572,0.00020043108,0.0006117988,0.00007419095,0.00023828923,0.000047937305,0.00065107626,0.00010798696,0.00003500954],"category_scores_gemma":[0.0012611313,0.0000896024,0.00034148138,0.00043610326,0.00033055604,0.00005761827,0.00010432501,0.00044393263,0.000030311796],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029372284,0.000589895,0.3957759,0.0107114455,0.0020197341,0.0014820249,0.035923764,0.000033467168,0.45278484,0.00437892,0.07470954,0.01865321],"study_design_scores_gemma":[0.02023566,0.004020567,0.0033575809,0.015025973,0.0006897893,0.84055334,0.026453342,0.0018903485,0.08345579,0.0016991211,0.002079457,0.0005390452],"about_ca_topic_score_codex":0.0000039191173,"about_ca_topic_score_gemma":2.358827e-7,"teacher_disagreement_score":0.8390713,"about_ca_system_score_codex":0.0001149933,"about_ca_system_score_gemma":0.00022665136,"threshold_uncertainty_score":0.365388},"labels":[],"label_agreement":null},{"id":"W3009784949","doi":"10.14785/lymphosign-2019-0015","title":"Abstracts from the Immunodeficiency Canada—7<sup>th</sup>SCID Symposium, Montreal, QC, 24 October 2019","year":2019,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Severe combined immunodeficiency; Human immunodeficiency virus (HIV); Virology; Family medicine; Medicine; Library science; Computer science; Biology; Genetics","score_opus":0.004213594515653405,"score_gpt":0.1776351975465751,"score_spread":0.17342160303092172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009784949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88302726,0.10019672,0.000087126675,0.0023481606,0.004481897,0.00040323395,0.00014688328,0.00006933306,0.009239383],"genre_scores_gemma":[0.99039304,0.001297746,0.000016361428,0.0016981262,0.000046231653,0.000010438448,0.00016178614,0.00005303206,0.006323211],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966889,0.00032359568,0.0009935709,0.00053463643,0.0002639015,0.0011953992],"domain_scores_gemma":[0.9978457,0.00047170834,0.0005353433,0.00093492586,0.00017449388,0.000037797356],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007192989,0.000519342,0.000580772,0.000104481245,0.0011808177,0.0001935893,0.0015310497,0.00036151687,0.0029589757],"category_scores_gemma":[0.000072916904,0.0003623246,0.00032241447,0.000289208,0.0002685121,0.00034971556,0.00017039049,0.0010915417,0.0020269603],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012723994,0.001204173,0.01404202,0.000034501896,0.0017732863,0.00018618519,0.011721253,0.017973509,0.612826,0.000903577,0.30249736,0.035565734],"study_design_scores_gemma":[0.01173943,0.00055399176,0.15530673,0.00047950685,0.00041321712,0.0027235348,0.011546341,0.0004701194,0.024249224,0.001254881,0.7891254,0.0021376195],"about_ca_topic_score_codex":0.42929733,"about_ca_topic_score_gemma":0.0068033817,"teacher_disagreement_score":0.5885768,"about_ca_system_score_codex":0.00033439507,"about_ca_system_score_gemma":0.0015739218,"threshold_uncertainty_score":0.9998829},"labels":[],"label_agreement":null},{"id":"W3011553586","doi":"10.14785/lymphosign-2020-0001","title":"Positive newborn screen: a case of a novel variant in <i>DCLRE1C</i> in a patient with SCID","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Ottawa; Newborn Screening Ontario; McMaster Children's Hospital","funders":"","keywords":"Gene; Phenotype; Immune system; V(D)J recombination; Antibody; Recombination-activating gene; Biology; Genetics; Medicine; Immunology; Recombination","score_opus":0.008928858753776345,"score_gpt":0.2140544327705373,"score_spread":0.20512557401676096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3011553586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9530054,0.00025126417,0.04578059,0.0002845009,0.000036062207,0.00020202606,0.000030699874,0.000004147549,0.0004053543],"genre_scores_gemma":[0.977543,0.000026159983,0.021403642,0.00091758935,0.00006861534,0.000007897675,0.000006793492,0.000022097867,0.0000041816124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894243,0.00007011371,0.00032759528,0.00025589447,0.00015184046,0.00025214785],"domain_scores_gemma":[0.9994294,0.000011219593,0.00016753408,0.00013856398,0.00008596235,0.00016729449],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019116083,0.00014883936,0.00019977803,0.00007187899,0.00003075486,0.000020265206,0.0001327965,0.00008972008,0.00000979629],"category_scores_gemma":[0.00005547369,0.00012657586,0.00006365807,0.00024084828,0.000039262297,0.00000782951,0.00007609953,0.0001299366,9.953509e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013659619,0.00038908853,0.00059898524,0.000015309139,0.000067047506,0.016620545,0.0014501167,0.00077937526,0.9717284,0.00017930717,0.00015065148,0.0066552106],"study_design_scores_gemma":[0.0114814555,0.0056608315,0.00047167245,0.00040804772,0.00004520406,0.100131445,0.0017347903,0.0056028883,0.8731661,0.0001186893,0.00063961954,0.00053924666],"about_ca_topic_score_codex":0.00016742348,"about_ca_topic_score_gemma":0.00016441107,"teacher_disagreement_score":0.09856229,"about_ca_system_score_codex":0.000045960343,"about_ca_system_score_gemma":0.00027214907,"threshold_uncertainty_score":0.5161614},"labels":[],"label_agreement":null},{"id":"W3016875046","doi":"10.14785/lymphosign-2020-0002","title":"Radiographic features of patients with chronic granulomatous disease","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Chronic granulomatous disease; Medicine; Primary immunodeficiency; Pathology; Pulmonary alveolar proteinosis; Granuloma; Differential diagnosis; Lung; Disease; Immunology; Internal medicine","score_opus":0.006173292102507735,"score_gpt":0.18296353166796533,"score_spread":0.17679023956545759,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016875046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98871934,0.007680079,0.0023111438,0.0005348216,0.0003154394,0.0002397263,0.000070699214,0.00004262025,0.00008611786],"genre_scores_gemma":[0.99890625,0.00021108791,0.00013534534,0.0005398167,0.000089154426,0.0000060069774,0.00004944852,0.000024871166,0.0000380081],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989816,0.00013611422,0.00026345428,0.0002152668,0.00008756554,0.00031602927],"domain_scores_gemma":[0.99933195,0.000033020235,0.00021821781,0.00015455429,0.00012635808,0.00013592765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000072181,0.0002029567,0.00030097814,0.000116987794,0.00019705466,0.000020379985,0.0002750364,0.00007973584,0.00039369342],"category_scores_gemma":[0.00002056539,0.00013954446,0.00014788688,0.00025270108,0.00017068737,0.00012493075,0.000038569786,0.0002519805,0.000052745847],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008609754,0.00090179325,0.14262247,0.00021615611,0.0017968507,0.0003699496,0.0014673496,0.00007206307,0.79190373,0.0052949293,0.022220068,0.024524886],"study_design_scores_gemma":[0.020935874,0.0050056837,0.55130064,0.00032796274,0.0005343912,0.0002927387,0.000140074,0.0000050825133,0.4031021,0.0015085828,0.01594555,0.00090130663],"about_ca_topic_score_codex":0.0000052328514,"about_ca_topic_score_gemma":0.0000013416045,"teacher_disagreement_score":0.40867817,"about_ca_system_score_codex":0.00003905012,"about_ca_system_score_gemma":0.00016504103,"threshold_uncertainty_score":0.5690458},"labels":[],"label_agreement":null},{"id":"W3021664301","doi":"10.14785/lymphosign-2020-0004","title":"An atypical presentation of ataxia telangiectasia in a school-aged boy secondary to an intronic mutation","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"DNA Repair Mechanisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Ataxia-telangiectasia; Telangiectasia; Medicine; Ataxia; Mutation; Splice site mutation; Dermatology; Pediatrics; Pathology; Genetics; Gene; Exon; Alternative splicing; Biology","score_opus":0.009885197910024667,"score_gpt":0.263911940679221,"score_spread":0.25402674276919635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021664301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98144114,0.00016325717,0.017867954,0.00023011424,0.00006264503,0.00016736738,0.000009079559,0.000011187406,0.000047231857],"genre_scores_gemma":[0.9926574,0.000017418737,0.0063479533,0.00055607775,0.00029355753,0.000009282206,0.00007687088,0.000021083935,0.000020361667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989345,0.00018442374,0.00028877443,0.00024038275,0.00016183814,0.0001900538],"domain_scores_gemma":[0.99936455,0.000004873711,0.00009522602,0.00016987426,0.0000621439,0.00030335356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024731,0.00010819783,0.00013214796,0.000054452892,0.0000381624,0.000039267943,0.00021552228,0.00010483926,0.0001734131],"category_scores_gemma":[0.00010424117,0.00010962976,0.000054895125,0.00012588853,0.000013654288,0.000026939499,0.000030522144,0.00013364985,0.000015134041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074277824,0.000078190256,0.0030108762,0.000011557331,0.00002357388,0.000028968392,0.00062173913,0.0009324233,0.9846256,0.000015793577,0.00077819556,0.009130315],"study_design_scores_gemma":[0.0036543966,0.0042336355,0.083320744,0.000040859115,0.00003345898,0.00040111883,0.0015588682,0.0042149303,0.90098053,0.0005360912,0.00067335047,0.0003519873],"about_ca_topic_score_codex":0.000019272773,"about_ca_topic_score_gemma":0.000043411354,"teacher_disagreement_score":0.08364503,"about_ca_system_score_codex":0.000048802867,"about_ca_system_score_gemma":0.00022019852,"threshold_uncertainty_score":0.44705716},"labels":[],"label_agreement":null},{"id":"W3021771747","doi":"10.14785/lymphosign-2020-0003","title":"Novel heterozygous PIK3CD mutation presenting with only laboratory markers of combined immunodeficiency","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Immunodeficiency; Mutation; Severe combined immunodeficiency; Medicine; Asymptomatic; Immunology; Compound heterozygosity; Primary immunodeficiency; Cancer research; Biology; Internal medicine; Immune system; Genetics; Gene","score_opus":0.008796396122974053,"score_gpt":0.2042856762881345,"score_spread":0.19548928016516043,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021771747","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96959776,0.012531741,0.015552437,0.000438129,0.00053035445,0.00023457082,0.000027621967,0.00007199314,0.0010154076],"genre_scores_gemma":[0.9991497,0.000069096954,0.00027504138,0.0003379144,0.000007990456,0.000004871838,0.000028448461,0.000030316689,0.00009665692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838364,0.00015446925,0.0006124581,0.00025829623,0.00012508949,0.00046602],"domain_scores_gemma":[0.99889386,0.00009281162,0.0005434563,0.00020736286,0.0002412058,0.000021308886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036513663,0.00024333512,0.00037255944,0.000119462245,0.00042178575,0.000047952653,0.00043873102,0.0001485742,0.00023179059],"category_scores_gemma":[0.000113844944,0.00020210967,0.00013419891,0.00043943198,0.0003118251,0.0002801773,0.000063145475,0.00039656876,0.000056724202],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001763659,0.00046361622,0.0020704716,0.00006157733,0.0003527985,0.000039250972,0.0040720226,0.00069250533,0.9841454,0.0003602659,0.00036298877,0.0056154164],"study_design_scores_gemma":[0.06984922,0.015156526,0.12673365,0.0011044889,0.0010351365,0.011127595,0.03286835,0.0026551695,0.71193117,0.00054221187,0.023157146,0.0038393247],"about_ca_topic_score_codex":0.000052572726,"about_ca_topic_score_gemma":6.050137e-7,"teacher_disagreement_score":0.27221423,"about_ca_system_score_codex":0.00004700939,"about_ca_system_score_gemma":0.00041033878,"threshold_uncertainty_score":0.82417935},"labels":[],"label_agreement":null},{"id":"W3028043047","doi":"10.14785/lymphosign-2020-0005","title":"Novel mutations in the <i>CYBB</i> gene causing X-linked chronic granulomatous disease: a case report of 2 patients","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chronic granulomatous disease; Primary immunodeficiency; Hematopoietic stem cell transplantation; Medicine; Congenital Neutropenia; Gene mutation; Compound heterozygosity; Immunology; Gastroenterology; Internal medicine; Transplantation; Mutation; Disease; Biology; Neutropenia; Genetics; Gene; Chemotherapy","score_opus":0.021947570733221695,"score_gpt":0.24106310854072902,"score_spread":0.2191155378075073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3028043047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98509586,0.0015800345,0.011716779,0.0008221154,0.00033746648,0.00030073276,0.00009402771,0.000017713894,0.00003527768],"genre_scores_gemma":[0.99856544,0.000050517967,0.00033812437,0.00078936986,0.00009993584,0.00001530925,0.00010489377,0.000019265726,0.000017127886],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985651,0.00021328875,0.0005892576,0.00022996866,0.0000913852,0.00031102786],"domain_scores_gemma":[0.99913406,0.000092202376,0.0003586633,0.00020846535,0.00013600288,0.000070587994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028915965,0.00017941656,0.0002674263,0.00009431028,0.00030260635,0.00002805458,0.00019773033,0.0000862959,0.00011525505],"category_scores_gemma":[0.000111004534,0.0001284865,0.00013320881,0.00029301742,0.00012366805,0.0001296452,0.000049975322,0.00029461074,0.000024808163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026729118,0.0004348572,0.0014593287,0.000033702854,0.00014894693,0.0466307,0.002648744,0.00014906637,0.9456931,0.0003583879,0.0007652217,0.0014106918],"study_design_scores_gemma":[0.022304134,0.0016676475,0.019969108,0.00032992449,0.00070166646,0.40014187,0.0021954183,0.00023851125,0.5426561,0.001675693,0.0070062345,0.0011136816],"about_ca_topic_score_codex":0.00004864491,"about_ca_topic_score_gemma":0.000012902356,"teacher_disagreement_score":0.40303695,"about_ca_system_score_codex":0.000099221346,"about_ca_system_score_gemma":0.00030441047,"threshold_uncertainty_score":0.5239527},"labels":[],"label_agreement":null},{"id":"W3047354729","doi":"10.14785/lymphosign-2020-0006","title":"Dysregulated CARD11 signaling in the development of diffuse large B cell lymphoma","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Signal transduction; Cancer research; Biology; Lymphoma; PI3K/AKT/mTOR pathway; Cell biology; Immunology","score_opus":0.024549410625214957,"score_gpt":0.2469700828011274,"score_spread":0.22242067217591244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047354729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955045,0.0013472261,0.00053727254,0.0012192343,0.00008740394,0.000284877,0.0000052352575,0.000018960081,0.0009952916],"genre_scores_gemma":[0.9956403,0.00007293407,0.0025666952,0.0014914407,0.00015579665,0.000017876033,0.0000113263295,0.000023089271,0.00002056876],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99807394,0.000105068735,0.0006793367,0.0002097747,0.0005484975,0.00038339698],"domain_scores_gemma":[0.99914527,0.00010591522,0.0002298828,0.0001827893,0.00009130712,0.00024482404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004628007,0.00021429459,0.00041848255,0.000102805985,0.00015142206,0.000043415585,0.00021536267,0.00008633138,0.00008509222],"category_scores_gemma":[0.000041102398,0.00013301826,0.0001791684,0.0003617917,0.000030603846,0.00007037119,0.000042582058,0.000098702134,0.00003205061],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030482842,0.03879836,0.5169575,0.00072083256,0.0015636986,0.00645533,0.1630538,0.00015678108,0.145844,0.0007927066,0.014070734,0.108537965],"study_design_scores_gemma":[0.12690815,0.0016469457,0.36423698,0.0009327897,0.0006947181,0.0018643966,0.009803605,0.0014136746,0.4675273,0.00020755426,0.023980878,0.000782997],"about_ca_topic_score_codex":0.000011832021,"about_ca_topic_score_gemma":0.0000044401736,"teacher_disagreement_score":0.32168332,"about_ca_system_score_codex":0.0003083433,"about_ca_system_score_gemma":0.0006071498,"threshold_uncertainty_score":0.5424327},"labels":[],"label_agreement":null},{"id":"W3048349291","doi":"10.14785/lymphosign-2020-0007","title":"Observational study of SARS-CoV-2 antibody immune response in a cohort of patients at a North Suburban Chicago, Illinois, in a physician’s practice","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Seroconversion; Medicine; Asymptomatic; Serology; Observational study; Population; Seroprevalence; Internal medicine; Health care; Immunology; Antibody; Environmental health","score_opus":0.07905975833405139,"score_gpt":0.370998447415282,"score_spread":0.2919386890812306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3048349291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783486,0.0003283494,0.00003519931,0.0006153772,0.0000639384,0.0009864712,0.00001766012,0.000010471547,0.000107666034],"genre_scores_gemma":[0.9889862,0.000019836774,0.00012955509,0.01070463,0.00008599564,0.000026102669,0.000011916924,0.000033428503,0.0000023671726],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9960949,0.0006371313,0.0011855024,0.0003487788,0.0013370824,0.00039664406],"domain_scores_gemma":[0.9978708,0.0005354734,0.0005983014,0.0003095347,0.00062178617,0.00006408141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013292122,0.00022815754,0.00073880755,0.00040513423,0.000067333836,0.000020935584,0.00031676824,0.000093896844,0.00000640688],"category_scores_gemma":[0.0018455759,0.00020507317,0.00014782883,0.0013677733,0.00009157188,0.00029662758,0.00014021239,0.0005195604,0.00001049671],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.025405599,0.0031682139,0.69840723,0.000055007567,0.00014216859,0.0003166619,0.0042488603,0.000007877563,0.26789927,0.0000036233316,0.00011972605,0.00022578736],"study_design_scores_gemma":[0.0123067,0.0035385326,0.9357593,0.00018037573,0.00008039729,0.000046225163,0.00079722854,0.0005707793,0.04522778,0.00001164609,0.0013224301,0.00015859731],"about_ca_topic_score_codex":0.0005833861,"about_ca_topic_score_gemma":0.00009907363,"teacher_disagreement_score":0.2373521,"about_ca_system_score_codex":0.00048773014,"about_ca_system_score_gemma":0.00096231006,"threshold_uncertainty_score":0.8362641},"labels":[],"label_agreement":null},{"id":"W3082335528","doi":"10.14785/lymphosign-2020-0008","title":"Report of the Canadian Expert Committee on the management of ADA deficiency","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Manitoba; Children's Hospital of Winnipeg; University of Calgary; McGill University Health Centre; Izaak Walton Killam Health Centre; Dalhousie University; Western University; University of Toronto; Child and Family Research Institute; Hospital for Sick Children; University of British Columbia; Memorial University of Newfoundland; McMaster University; McMaster Children's Hospital","funders":"","keywords":"Adenosine deaminase deficiency; Adenosine deaminase; Severe combined immunodeficiency; Immunodeficiency; Hematopoietic stem cell transplantation; Medicine; Enzyme replacement therapy; Genetic enhancement; Immune system; Failure to thrive; Transplantation; Immunology; Pediatrics; Gene; Internal medicine; Biology; Adenosine; Disease; Genetics","score_opus":0.029724485110408108,"score_gpt":0.27846350116725904,"score_spread":0.24873901605685095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3082335528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9807966,0.0014635148,0.0002068468,0.0101995515,0.00014461015,0.00023537708,0.000009193886,0.000002047042,0.006942303],"genre_scores_gemma":[0.9975472,0.00022337325,0.00010580731,0.0018976468,0.00009426503,0.000005207707,0.00000196911,0.000011650499,0.00011286115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990194,0.00010180645,0.0002291472,0.00012486533,0.0003268363,0.0001979568],"domain_scores_gemma":[0.9992678,0.000009179706,0.0001378675,0.00037513007,0.000086556836,0.0001234561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043007272,0.0000825759,0.00008665005,0.000022111399,0.0001874014,0.000016504882,0.0005707654,0.000046209243,0.00008100041],"category_scores_gemma":[0.000029378245,0.000047256362,0.00011132139,0.00013808675,0.000104917846,0.0000014008306,0.00007131258,0.0001058137,0.000002906773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014540047,0.00017181181,0.0045764847,0.00005380044,0.00053729606,0.00029639291,0.00094123126,0.00070106034,0.8815611,0.001210356,0.09169,0.01680648],"study_design_scores_gemma":[0.0006703995,0.0014942925,0.0018274623,0.000055461413,0.000018009865,0.00025033485,0.00045914427,0.000062682986,0.96541977,0.00018600585,0.029426722,0.0001297106],"about_ca_topic_score_codex":0.0009834312,"about_ca_topic_score_gemma":0.002171738,"teacher_disagreement_score":0.08385868,"about_ca_system_score_codex":0.00004501967,"about_ca_system_score_gemma":0.000399946,"threshold_uncertainty_score":0.19270585},"labels":[],"label_agreement":null},{"id":"W3096500199","doi":"10.14785/lymphosign-2020-0010","title":"Diets for patients undergoing haematopoietic stem cell transplant—a review","year":2020,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutropenia and Cancer Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation","funders":"","keywords":"Novelty; Medicine; Haematopoiesis; Stem cell; Intensive care medicine; Hematopoietic stem cell transplantation; Transplantation; Surgery; Psychology; Biology","score_opus":0.027229740765440037,"score_gpt":0.26276170918371883,"score_spread":0.23553196841827878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3096500199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5843422,0.15319952,0.14151007,0.0778342,0.0057778396,0.009519495,0.00020880165,0.00062944915,0.026978435],"genre_scores_gemma":[0.9675755,0.019308196,0.0004984968,0.011920109,0.00042247216,0.000043500055,0.000011779647,0.000041597952,0.00017834581],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990133,0.000032243574,0.00034175118,0.00016197709,0.00021462713,0.00023609877],"domain_scores_gemma":[0.9992616,0.00006438977,0.00013194405,0.0000995188,0.000111868016,0.00033065287],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009868024,0.00013464848,0.0003256584,0.000029873041,0.00017685031,0.000030400151,0.0000885481,0.000041192092,0.00016482476],"category_scores_gemma":[0.000012273317,0.00010753458,0.00022982602,0.00013131296,0.000016169526,0.00009070573,0.000008686831,0.00014520739,0.000049628325],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003469809,0.0023485422,0.1612133,0.050690036,0.0010923891,0.0010350281,0.0065995543,0.0000676152,0.015638443,0.00093839294,0.64653945,0.11036743],"study_design_scores_gemma":[0.08631224,0.024668243,0.01676491,0.054465696,0.009258711,0.012820646,0.0008808554,0.0005802219,0.044170555,0.0012984606,0.7459653,0.0028141805],"about_ca_topic_score_codex":8.92679e-7,"about_ca_topic_score_gemma":5.98978e-7,"teacher_disagreement_score":0.3832333,"about_ca_system_score_codex":0.00009875619,"about_ca_system_score_gemma":0.00023870576,"threshold_uncertainty_score":0.4385133},"labels":[],"label_agreement":null},{"id":"W3130516290","doi":"10.14785/lymphosign-2021-0014","title":"Identification of a novel RAG1 hypomorphic mutation in a child presenting with disseminated vaccine-strain varicella","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Recombination-activating gene; Missense mutation; Exome sequencing; RAG2; Genetics; Biology; Exome; Hematopoietic stem cell transplantation; Mutation; Gene","score_opus":0.006797213834444423,"score_gpt":0.21838246337963846,"score_spread":0.21158524954519403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3130516290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9782374,0.009888423,0.010749817,0.00025117802,0.00028813933,0.00013564904,0.000015619236,0.000017720931,0.00041608504],"genre_scores_gemma":[0.9993356,0.000096178774,0.00008004276,0.000028730601,0.0000043113114,0.000007575005,0.0000858984,0.000014671822,0.0003469946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986858,0.00014262405,0.0006105367,0.00020311416,0.00006795735,0.00029],"domain_scores_gemma":[0.999109,0.000087054395,0.00043606304,0.00017771553,0.00018254,0.0000076253004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051858387,0.00014065015,0.00023909904,0.00018132917,0.00021716817,0.000038518534,0.00018326027,0.000122579,0.00013705452],"category_scores_gemma":[0.00013615227,0.0001230603,0.00007341698,0.00053146033,0.00006236195,0.00016042138,0.000028552706,0.00029773818,0.000011409213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015101115,0.0006228662,0.001179305,0.000025796257,0.00010433996,0.00007351966,0.002179267,0.0007534839,0.9912825,0.0002881994,0.00002375433,0.003315917],"study_design_scores_gemma":[0.012712039,0.0002147414,0.13767655,0.0005771117,0.00015432893,0.014731877,0.0071427315,0.001565804,0.8237605,0.00044050853,0.0005207138,0.00050310016],"about_ca_topic_score_codex":0.000036853162,"about_ca_topic_score_gemma":0.000005458609,"teacher_disagreement_score":0.16752206,"about_ca_system_score_codex":0.000044493925,"about_ca_system_score_gemma":0.0001651708,"threshold_uncertainty_score":0.50182533},"labels":[],"label_agreement":null},{"id":"W3132977164","doi":"10.14785/lymphosign-2021-0012","title":"Homozygous NF-kB1 mutation causing combined immunodeficiency: a histopathological analysis","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Germinal center; Histopathology; Immunodeficiency; Lymph node; Pathology; Immune system; Biology; Context (archaeology); B cell; Lymph node biopsy; Immunology; Cancer research; Medicine; Antibody","score_opus":0.009467449716360826,"score_gpt":0.22505544751778914,"score_spread":0.21558799780142832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3132977164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8748965,0.08300622,0.036904484,0.0004128626,0.001963725,0.000120584904,0.000014667289,0.00012923712,0.0025516653],"genre_scores_gemma":[0.9971192,0.00033015216,0.00024916587,0.0004022657,0.000009989136,0.000008642809,0.00015722595,0.000021122683,0.001702254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99751127,0.00050386495,0.00073341967,0.0004290048,0.00012900268,0.00069345854],"domain_scores_gemma":[0.99875826,0.00013474529,0.00036154932,0.00042758018,0.00029725893,0.0000205872],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007217537,0.00029524276,0.000585352,0.00038102624,0.0012073021,0.00014472644,0.00030718735,0.00029314926,0.0015999735],"category_scores_gemma":[0.0002189942,0.00026473502,0.0005639288,0.001296165,0.00029859977,0.00021555145,0.0001028515,0.00056129857,0.00023749965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046843925,0.0016400627,0.0017655488,0.00002091988,0.0018676621,0.0055564307,0.0060672634,0.0023319493,0.9300901,0.0029446948,0.0007757129,0.0464712],"study_design_scores_gemma":[0.04222298,0.0036247002,0.18640137,0.0005346917,0.012502238,0.28020674,0.028769009,0.004189087,0.31142375,0.020099726,0.10325551,0.0067701954],"about_ca_topic_score_codex":0.00006238436,"about_ca_topic_score_gemma":0.0000031815441,"teacher_disagreement_score":0.61866635,"about_ca_system_score_codex":0.00022231635,"about_ca_system_score_gemma":0.00040227038,"threshold_uncertainty_score":0.9999805},"labels":[],"label_agreement":null},{"id":"W3134000823","doi":"10.14785/lymphosign-2021-0013","title":"A novel splice site variant in <i>FOXN1</i> in a patient with abnormal newborn screening for severe combined immunodeficiency and congenital lymphopenia","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"FOXO transcription factor regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Severe combined immunodeficiency; Missense mutation; Immunodeficiency; Asymptomatic; Haploinsufficiency; Mutation; Compound heterozygosity; Primary immunodeficiency; Splice site mutation; Medicine; CD8; Phenotype; Immunology; Biology; Genetics; Immune system; Gene; Internal medicine; Alternative splicing; Exon","score_opus":0.008706387432417792,"score_gpt":0.20799546575362798,"score_spread":0.19928907832121018,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134000823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92039573,0.0010817436,0.07797208,0.00009692101,0.00007927418,0.0002290234,0.000038922033,0.000004567321,0.000101716956],"genre_scores_gemma":[0.9830646,0.00007798767,0.016440913,0.00022120656,0.000036804708,0.000019343172,0.00009009067,0.000023508404,0.000025545958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988769,0.00004879829,0.00033980072,0.00029028862,0.00014224366,0.0003019561],"domain_scores_gemma":[0.9994941,0.000017595148,0.00011817684,0.00014705109,0.00013734422,0.00008578284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017160866,0.00017053263,0.00017827583,0.00008229777,0.00009955785,0.00007645009,0.00008834542,0.00010720831,0.000008918863],"category_scores_gemma":[0.000031438303,0.00016035653,0.00005240103,0.0002112614,0.000043310298,0.000029543511,0.0000407748,0.0000926289,5.4079686e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015212569,0.00020797507,0.010453397,0.0000158594,0.000047726517,0.00013856153,0.00056242704,0.0014847068,0.9781128,0.00005033484,0.00003058263,0.00737438],"study_design_scores_gemma":[0.10811289,0.007040366,0.43438444,0.0009253382,0.00025653443,0.08331248,0.0042718537,0.026386462,0.31409162,0.0002149886,0.018005718,0.002997324],"about_ca_topic_score_codex":0.000101062076,"about_ca_topic_score_gemma":0.00034504826,"teacher_disagreement_score":0.6640212,"about_ca_system_score_codex":0.000050552124,"about_ca_system_score_gemma":0.00027828987,"threshold_uncertainty_score":0.653915},"labels":[],"label_agreement":null},{"id":"W3134043935","doi":"10.14785/lymphosign-2021-0015","title":"Canadian resource guides for individuals and families affected by primary immunodeficiency","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation; University of Toronto","funders":"","keywords":"Psychosocial; Resource (disambiguation); Primary immunodeficiency; Medicine; Population; Social support; Family medicine; Psychology; Disease; Psychiatry; Environmental health; Computer science; Social psychology","score_opus":0.0066608327396452,"score_gpt":0.22753026971937917,"score_spread":0.22086943697973396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3134043935","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97191674,0.016069388,0.0009986376,0.0045916443,0.00029479293,0.00044365643,0.00014020674,0.000062099636,0.005482818],"genre_scores_gemma":[0.99062574,0.0010803787,0.0024163153,0.0032403308,0.00012952604,0.000036160614,0.00010041223,0.000042703283,0.002328416],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99878365,0.000059244507,0.00029194643,0.00023850307,0.00023651522,0.0003901272],"domain_scores_gemma":[0.99905384,0.000094471565,0.000095875155,0.0001745221,0.00013557322,0.0004457508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002477507,0.00017520912,0.00029863205,0.00018262133,0.00041927997,0.00012712851,0.00006639407,0.00009854573,0.00006327271],"category_scores_gemma":[0.00016096338,0.00015002921,0.00010926408,0.00019516487,0.000048741633,0.000074648065,0.000023166855,0.00013885665,0.000007645657],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026722442,0.00071563805,0.04359943,0.00019984593,0.0009271083,0.0013314717,0.0015770828,0.000009683839,0.6728902,0.00025023674,0.09714161,0.1810905],"study_design_scores_gemma":[0.014162859,0.0016260312,0.20390698,0.00047938776,0.0006612397,0.038114935,0.001613844,0.00016777618,0.064014025,0.0006414765,0.6739314,0.00068001624],"about_ca_topic_score_codex":0.0013783238,"about_ca_topic_score_gemma":0.00054113177,"teacher_disagreement_score":0.6088761,"about_ca_system_score_codex":0.0006207038,"about_ca_system_score_gemma":0.0008834776,"threshold_uncertainty_score":0.6118014},"labels":[],"label_agreement":null},{"id":"W3156145821","doi":"10.14785/lymphosign-2021-0017","title":"Point-Of-Care clinical evaluation of the Clungene<sup>®</sup> SARS-CoV-2 virus IgG/IgM 15-minute rapid test cassette with the Cobas<sup>®</sup> Roche RT-PCR platform in patients with or without Covid-19","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Serology; Medicine; Coronavirus disease 2019 (COVID-19); Internal medicine; Real-time polymerase chain reaction; Antibody; Immunoassay; Roche Diagnostics; Virology; Immunology; Gastroenterology; Disease; Biology; Gene; Infectious disease (medical specialty)","score_opus":0.08654514192650445,"score_gpt":0.37906760902592634,"score_spread":0.29252246709942187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3156145821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993368,0.0016152399,0.00074834964,0.0015223997,0.00014342215,0.0020401266,0.00009646047,0.000033245666,0.00043274663],"genre_scores_gemma":[0.97293746,0.000081440856,0.0005744971,0.025737913,0.00039619193,0.000097237345,0.00003113533,0.00011436688,0.00002973913],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9915389,0.0011873696,0.0016597738,0.000799216,0.0038724323,0.0009423428],"domain_scores_gemma":[0.99314463,0.0016466221,0.0009823897,0.0013862798,0.0025810255,0.00025907543],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.005047112,0.0006180804,0.0012571738,0.00037664402,0.00046806384,0.00015051791,0.00094006304,0.00039779855,0.00011804605],"category_scores_gemma":[0.0030515636,0.0003166474,0.00044111634,0.0017079284,0.0007423384,0.00039997604,0.00023664797,0.0013704344,0.000023560033],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.015499286,0.0017093288,0.9438458,0.00039521852,0.00096802786,0.00037200737,0.009129118,0.0006057747,0.006455832,0.000022619115,0.0050695213,0.015927482],"study_design_scores_gemma":[0.20387267,0.027029477,0.2139305,0.0065675033,0.0074266642,0.007396106,0.03333483,0.087289855,0.35026693,0.0007733675,0.058974206,0.0031378781],"about_ca_topic_score_codex":0.00025387833,"about_ca_topic_score_gemma":0.0007929963,"teacher_disagreement_score":0.72991526,"about_ca_system_score_codex":0.0014067194,"about_ca_system_score_gemma":0.010967396,"threshold_uncertainty_score":0.99992853},"labels":[],"label_agreement":null},{"id":"W3163628599","doi":"10.14785/lymphosign-2021-0018","title":"The spectrum of multisystem inflammatory syndrome (MIS-C) in children infected with severe acute respiratory syndrome coronavirus 2","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Kawasaki Disease and Coronary Complications","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Disease; Epidemiology; Kawasaki disease; Novelty; Broad spectrum; Coronavirus disease 2019 (COVID-19); Pediatrics; Intensive care medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Immunology; Infectious disease (medical specialty); Pathology; Internal medicine","score_opus":0.010863979003793975,"score_gpt":0.24692930337951802,"score_spread":0.23606532437572403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3163628599","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954486,0.003070683,0.00014849937,0.00034301623,0.000093574,0.00041417964,0.000028923409,0.0000398164,0.0004127129],"genre_scores_gemma":[0.99907434,0.00018349811,0.00012772334,0.00026069637,0.000064855536,0.000035460012,0.000018123885,0.000039733717,0.00019558816],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99802655,0.00018901766,0.0006392884,0.00026881785,0.00048422505,0.0003921025],"domain_scores_gemma":[0.9984994,0.000102481885,0.00032022022,0.00058836024,0.00020358175,0.00028594327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026855856,0.00022695724,0.0004298159,0.00015421142,0.00026326918,0.000055124514,0.00024601386,0.0000961077,0.00012536935],"category_scores_gemma":[0.000033667187,0.00015958767,0.00015299015,0.0005114691,0.00012573387,0.00016795968,0.000053415344,0.00036388732,0.000035703077],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004037249,0.0003357839,0.9856877,0.000048861693,0.00087114645,0.006538681,0.00014136771,0.000053438504,0.0037321649,0.0004110832,0.00028510758,0.0014909612],"study_design_scores_gemma":[0.0034764432,0.00044660803,0.87392986,0.00048318028,0.00022503998,0.11992714,0.00013919476,0.00002678622,0.0007084782,0.0001221272,0.00034037262,0.0001747523],"about_ca_topic_score_codex":0.000027341945,"about_ca_topic_score_gemma":0.000040103572,"teacher_disagreement_score":0.11338846,"about_ca_system_score_codex":0.00031037698,"about_ca_system_score_gemma":0.0014122478,"threshold_uncertainty_score":0.6507796},"labels":[],"label_agreement":null},{"id":"W3167175475","doi":"10.14785/lymphosign-2021-0019","title":"Chronic mucocutaneous Candidiasis caused by a novel <i>STAT1</i> mutation: a report of 4 patients","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Chronic mucocutaneous candidiasis; Missense mutation; Biology; Proband; Phenotype; Immune system; Gene; Genetics; Medicine; Mutation; Immunology; Disease; Internal medicine","score_opus":0.005742077307912819,"score_gpt":0.20910970594069617,"score_spread":0.20336762863278335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3167175475","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9088279,0.08235789,0.004777259,0.0003369627,0.0020641712,0.00017714986,0.00013215501,0.00004190035,0.0012846277],"genre_scores_gemma":[0.9975595,0.00024800666,0.000050814422,0.00016284426,0.00001159972,0.0000071717295,0.0003536304,0.000022280668,0.0015841819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984052,0.00010687989,0.0007064982,0.0002507,0.0001061574,0.00042456383],"domain_scores_gemma":[0.99877435,0.00008474847,0.0005033607,0.00027942992,0.0003408772,0.000017218752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023002227,0.00019427267,0.00034693707,0.00008017358,0.00033119012,0.00003764712,0.0002112177,0.00017639295,0.0007979427],"category_scores_gemma":[0.0001506592,0.00018333484,0.00018882881,0.00025980445,0.00016703218,0.00014767806,0.000048259848,0.00026412818,0.000044443983],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013429232,0.00088166096,0.0012066005,0.000039874303,0.00052241137,0.00095481204,0.002211231,0.0000847762,0.96266365,0.000090365604,0.005228522,0.025981793],"study_design_scores_gemma":[0.013783328,0.00082979165,0.0050825565,0.00021778143,0.00027928862,0.03365899,0.0020364593,0.000022053502,0.7247243,0.00024547218,0.21835808,0.0007619049],"about_ca_topic_score_codex":0.00010681824,"about_ca_topic_score_gemma":0.0000057024654,"teacher_disagreement_score":0.23793937,"about_ca_system_score_codex":0.00023941933,"about_ca_system_score_gemma":0.0012200767,"threshold_uncertainty_score":0.8736913},"labels":[],"label_agreement":null},{"id":"W3195350193","doi":"10.14785/lymphosign-2021-0022","title":"Wiskott-Aldrich syndrome caused by a novel mutation in the <i>WAS</i> gene and presenting with a mild phenotype","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Cell Adhesion Molecules Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Missense mutation; Wiskott–Aldrich syndrome; Mutation; Wiskott–Aldrich syndrome protein; Phenotype; Exon; Genetics; Immunodeficiency; Gene mutation; Gene; Mutation testing; Primary immunodeficiency; Medicine; Biology; Immune system","score_opus":0.020295143634073882,"score_gpt":0.2710958036924988,"score_spread":0.25080066005842494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195350193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907751,0.0020954744,0.0038618895,0.0024592953,0.000036666646,0.0002620476,0.0000040555797,0.000010755084,0.00049468956],"genre_scores_gemma":[0.9955003,0.000234874,0.002690357,0.0009524651,0.000079115656,0.0000146567745,0.000018436263,0.000031404612,0.00047835163],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99825925,0.00014194266,0.0002751709,0.00024087797,0.0007276455,0.00035511356],"domain_scores_gemma":[0.9991742,0.00016602816,0.000098862045,0.00020526019,0.00018658268,0.00016909995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005400361,0.0001387367,0.00022473774,0.000120323704,0.00015918081,0.00014738574,0.00011924133,0.000065150336,0.00007594648],"category_scores_gemma":[0.00014588269,0.000091258196,0.00004365087,0.00057343696,0.00006499023,0.00009879937,0.00004773145,0.00038048456,0.00000758106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039642956,0.0007275154,0.03218675,0.00012806001,0.00020050516,0.013905797,0.0031865134,0.00007441394,0.940722,0.000047641435,0.005888389,0.0025360016],"study_design_scores_gemma":[0.044961292,0.0027625668,0.46085992,0.0012244948,0.00066009996,0.24615306,0.00714203,0.011643617,0.2147816,0.0007486625,0.007884764,0.001177883],"about_ca_topic_score_codex":0.000049978382,"about_ca_topic_score_gemma":0.000021216836,"teacher_disagreement_score":0.7259404,"about_ca_system_score_codex":0.00011439898,"about_ca_system_score_gemma":0.00038388395,"threshold_uncertainty_score":0.37214014},"labels":[],"label_agreement":null},{"id":"W3197476580","doi":"10.14785/lymphosign-2021-0024","title":"Elevated serum gamma globulins in apparently healthy Nigerians living in Ogbomoso: a possible manifestation of phagocytic dysfunction","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Nigerians; Phagocytosis; Hypergammaglobulinemia; Gamma globulin; Immunology; Globulin; Immune system; Opsonin; Medicine; Internal medicine; Endocrinology; Biology; Antibody","score_opus":0.01398803691215997,"score_gpt":0.24189041558877833,"score_spread":0.22790237867661836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3197476580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926358,0.001621014,0.0041912235,0.000295598,0.00086535345,0.0001738387,0.000016545284,0.000021762073,0.00017886687],"genre_scores_gemma":[0.9983749,0.0006698305,0.00024496845,0.00029703314,0.000054621967,0.000011627014,0.000036891455,0.000022759572,0.00028736837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977872,0.000593184,0.00074320834,0.0002993148,0.00008305685,0.0004940625],"domain_scores_gemma":[0.99915856,0.00013470567,0.00031331248,0.00017721103,0.00016743263,0.00004878409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059180806,0.00020301368,0.00040340063,0.00034660124,0.00013801975,0.000032416527,0.000154572,0.00020603708,0.0006083084],"category_scores_gemma":[0.0001069155,0.0001994274,0.00009038033,0.0006192985,0.000050006925,0.00024273798,0.000049349535,0.00038272943,0.00007278833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044594306,0.00048098812,0.020005079,0.000059348782,0.00007850052,0.00039251713,0.0016276407,0.00016491808,0.9711891,0.0007159577,0.00013662728,0.004703401],"study_design_scores_gemma":[0.0073762317,0.0009700391,0.1240573,0.0009728492,0.000048205715,0.0032632542,0.0037752087,0.00015129057,0.85682034,0.0018025623,0.00034575694,0.00041697745],"about_ca_topic_score_codex":0.00012989662,"about_ca_topic_score_gemma":0.00038260853,"teacher_disagreement_score":0.11436876,"about_ca_system_score_codex":0.000405653,"about_ca_system_score_gemma":0.0006106446,"threshold_uncertainty_score":0.81324136},"labels":[],"label_agreement":null},{"id":"W3198586916","doi":"10.14785/lymphosign-2021-0026","title":"A case of common variable immune deficiency with lung disease–not just bronchiectasis","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Common variable immunodeficiency; Rituximab; Medicine; Bronchiectasis; Immune dysregulation; Interstitial lung disease; Population; Immunology; Disease; Pediatrics; Lung; Immune system; Antibody; Internal medicine","score_opus":0.009676951091275929,"score_gpt":0.22714752270119248,"score_spread":0.21747057160991656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3198586916","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8678645,0.121001475,0.0074532814,0.000221108,0.0009489497,0.0001900202,0.00006664307,0.00005465471,0.0021993855],"genre_scores_gemma":[0.9978276,0.0004318421,0.00025096143,0.00017698282,0.000007820492,0.000009238437,0.0000416957,0.000028976736,0.0012248681],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.998088,0.0002971372,0.00065119256,0.0002911605,0.00008987685,0.00058260845],"domain_scores_gemma":[0.9987256,0.000175178,0.0003685825,0.00047543301,0.00022405921,0.00003116784],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004248684,0.00026803307,0.0004896164,0.00013709135,0.0007949801,0.00005659812,0.00033364582,0.00014844237,0.0016850979],"category_scores_gemma":[0.00010982025,0.00019749241,0.00018583001,0.0005482716,0.00031884684,0.00020147054,0.00010016017,0.000406226,0.000033612432],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008135418,0.0055266856,0.0059682624,0.0005772941,0.0017552761,0.021688147,0.007407946,0.0020981021,0.8630126,0.015603884,0.0025122175,0.06571417],"study_design_scores_gemma":[0.030201606,0.0021132086,0.019274386,0.0020728116,0.0028004646,0.54566073,0.024441533,0.00087106484,0.34534457,0.0016430118,0.022749396,0.0028271952],"about_ca_topic_score_codex":0.00023419093,"about_ca_topic_score_gemma":0.0000073565056,"teacher_disagreement_score":0.5239726,"about_ca_system_score_codex":0.0000881928,"about_ca_system_score_gemma":0.0010165757,"threshold_uncertainty_score":0.9992275},"labels":[],"label_agreement":null},{"id":"W3212253102","doi":"10.14785/lymphosign-2021-0027","title":"Unique presentations of the post COVID-19 infection, multisystem inflammatory syndrome in children","year":2021,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Kawasaki Disease and Coronary Complications","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Myocarditis; Myopericarditis; Population; Pericardial effusion; Disease; Kawasaki disease; Pathophysiology; Abdominal pain; Immunology; Pediatrics; Intensive care medicine; Internal medicine","score_opus":0.01296333180092084,"score_gpt":0.28029128046971025,"score_spread":0.2673279486687894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3212253102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937758,0.0005391949,0.0018753813,0.0028553614,0.00010869965,0.000333146,0.000013826176,0.00002061613,0.0004780053],"genre_scores_gemma":[0.9984737,0.00010498416,0.00010242161,0.0009566063,0.00006179714,0.000028488648,0.00002050346,0.000012329671,0.00023915844],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99894446,0.00018575939,0.0003815648,0.00012796083,0.00022211878,0.00013810903],"domain_scores_gemma":[0.9989886,0.00006457717,0.0001644584,0.00031373324,0.00023858748,0.00023003247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015234695,0.00008912351,0.00016206753,0.00012394624,0.00018110707,0.000020692009,0.000111662004,0.000053400174,0.00018413422],"category_scores_gemma":[0.00020133972,0.00006934667,0.00014322966,0.0004125036,0.000056223333,0.00010260267,0.000045197747,0.00016427753,0.000010619175],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002439994,0.00020330914,0.9944722,0.00004474763,0.00008785638,0.00009904154,0.00023911514,0.0002172749,0.0022462327,0.0010972559,0.0010740696,0.00019448437],"study_design_scores_gemma":[0.001418739,0.00003752006,0.9801586,0.0001094997,0.000075852884,0.01625137,0.00013274085,0.000060183032,0.0006306425,0.0004482345,0.0006107822,0.00006583393],"about_ca_topic_score_codex":0.00021058977,"about_ca_topic_score_gemma":0.00007353668,"teacher_disagreement_score":0.01615233,"about_ca_system_score_codex":0.0001683,"about_ca_system_score_gemma":0.0019001245,"threshold_uncertainty_score":0.33707392},"labels":[],"label_agreement":null},{"id":"W4213064266","doi":"10.14785/lymphosign-2021-0029","title":"Case report of a novel mutation in Bruton’s tyrosine kinase gene with confirmed agammaglobulinemia and absent B lymphocytes","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Bruton's tyrosine kinase; X-linked agammaglobulinemia; Immunology; Medicine; Immune system; Antibody; Gene mutation; Bronchiectasis; Mutation; Tyrosine kinase; Biology; Gene; Genetics; Internal medicine","score_opus":0.011451503270227545,"score_gpt":0.22191275851289105,"score_spread":0.21046125524266351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213064266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97841555,0.019543359,0.0011961658,0.0001411969,0.0003510288,0.00018530154,0.000027290544,0.000016305474,0.00012382756],"genre_scores_gemma":[0.99921536,0.00008795649,0.0002536894,0.00010778058,0.000004858723,0.000025044255,0.00006361664,0.000017230253,0.00022447022],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99863696,0.00012284865,0.0006034269,0.00023417278,0.00008768269,0.00031491756],"domain_scores_gemma":[0.999175,0.00007625757,0.0004555905,0.000187972,0.00009116417,0.00001397696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061949703,0.00017586557,0.00031060787,0.00022241296,0.00041549173,0.000018270686,0.00013854435,0.000075378055,0.00023061145],"category_scores_gemma":[0.000053751082,0.00015423977,0.0000618794,0.00027346006,0.00021720794,0.0000947949,0.00007775373,0.0002653395,0.0000021990145],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018880996,0.0013077348,0.0031262047,0.00004103516,0.00023538907,0.061880905,0.00506059,0.0040415265,0.909789,0.00031216492,0.00018540396,0.012131899],"study_design_scores_gemma":[0.012795147,0.0006538186,0.004660716,0.000057268666,0.00006893325,0.9010117,0.0043068165,0.00031782314,0.07379366,0.000058471916,0.001982699,0.0002929638],"about_ca_topic_score_codex":0.0007285973,"about_ca_topic_score_gemma":0.000012241238,"teacher_disagreement_score":0.83913076,"about_ca_system_score_codex":0.00018796447,"about_ca_system_score_gemma":0.0004291263,"threshold_uncertainty_score":0.6289715},"labels":[],"label_agreement":null},{"id":"W4213454090","doi":"10.14785/lymphosign-2022-0002","title":"Novel mutation in <i>PIK3CD</i> affecting the Ras-binding domain","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Mutation; Biology; Missense mutation; Immune system; Exome sequencing; Cancer research; Genetics; Immunology; Medicine; Gene","score_opus":0.008815672222210904,"score_gpt":0.21691284108875739,"score_spread":0.20809716886654647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213454090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9798083,0.012253741,0.0037154737,0.0006732593,0.0020540445,0.00019216849,0.0000071989593,0.000032005766,0.0012638246],"genre_scores_gemma":[0.99912643,0.000027793649,0.000053398166,0.00038452828,0.000010035976,0.00002660406,0.000019297564,0.000016384562,0.00033551408],"study_design_codex":"bench_or_experimental","study_design_gemma":"qualitative","domain_scores_codex":[0.99855036,0.00039164096,0.00036461427,0.00016754963,0.000081546044,0.00044429486],"domain_scores_gemma":[0.9993693,0.00021704995,0.00023471778,0.00015273747,0.000020824044,0.000005366356],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00180407,0.00013893656,0.00016886048,0.00017097316,0.001956867,0.00004936456,0.00041953797,0.00006393926,0.0005718257],"category_scores_gemma":[0.000060816004,0.000109001354,0.00011650063,0.0003951034,0.000097490505,0.00012928201,0.00012284328,0.00076361647,0.000060899354],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016881718,0.00025431393,0.000771216,0.000004363069,0.00006851766,0.000037691632,0.011588594,0.0022263716,0.9611707,0.0010407459,0.0006015454,0.022067139],"study_design_scores_gemma":[0.05140138,0.0022356105,0.04179495,0.0003835511,0.00024192024,0.077535644,0.35271445,0.0007773298,0.13170041,0.014926045,0.32341748,0.0028712316],"about_ca_topic_score_codex":0.00010944517,"about_ca_topic_score_gemma":0.0000031462355,"teacher_disagreement_score":0.8294703,"about_ca_system_score_codex":0.00023374437,"about_ca_system_score_gemma":0.00013588446,"threshold_uncertainty_score":0.99934244},"labels":[],"label_agreement":null},{"id":"W4214548664","doi":"10.14785/lymphosign-2022-0001","title":"A novel mutation in <i>TRAC</i> in a patient with abnormal newborn screening for severe combined immunodeficiency","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"T-cell receptor; Severe combined immunodeficiency; Immunodeficiency; Primary immunodeficiency; Mutation; Biology; Immunology; T cell; Medicine; Immune system; Gene; Genetics","score_opus":0.009102896361018815,"score_gpt":0.20749736647456354,"score_spread":0.19839447011354472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214548664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9507996,0.009967623,0.037234172,0.00026052128,0.00059646205,0.0006563837,0.000044221535,0.000033299177,0.0004077062],"genre_scores_gemma":[0.9981299,0.000022129005,0.0011076716,0.00034267976,0.0000028433417,0.00017091571,0.00009344391,0.000027579876,0.00010281008],"study_design_codex":"design_other","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9981554,0.00017540266,0.0006347688,0.00027619832,0.00010097638,0.00065726804],"domain_scores_gemma":[0.9993065,0.0001261798,0.00031856966,0.00017189156,0.00006699041,0.000009859379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007429025,0.00022394654,0.00031218235,0.00038849787,0.00078414293,0.000041939587,0.00035453946,0.000092785885,0.00017599484],"category_scores_gemma":[0.000038798033,0.0002078626,0.00011148231,0.00056580896,0.00009139927,0.00025979648,0.00008926624,0.0006179216,0.0000057088855],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0149438325,0.0050175353,0.006537838,0.00005478751,0.0002500223,0.00036288772,0.033494737,0.124084815,0.3822327,0.0014939043,0.0003420362,0.43118492],"study_design_scores_gemma":[0.26630035,0.032268625,0.15307695,0.0014983424,0.00036785108,0.11312115,0.18617514,0.016177136,0.027196271,0.004133725,0.19341145,0.0062730075],"about_ca_topic_score_codex":0.0003510132,"about_ca_topic_score_gemma":0.000020963369,"teacher_disagreement_score":0.42491192,"about_ca_system_score_codex":0.0002337143,"about_ca_system_score_gemma":0.00030468046,"threshold_uncertainty_score":0.847639},"labels":[],"label_agreement":null},{"id":"W4232953936","doi":"10.14785/lpsn-2015-0903","title":"Immunodeficiency Canada Primary Immunodeficiency Video ConferencesVarious dates, 2014Multiple sites across Canada","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Neutrophil, Myeloperoxidase and Oxidative Mechanisms","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Primary immunodeficiency; Human immunodeficiency virus (HIV); Immunodeficiency; Geography; Medicine; Virology; Immunology","score_opus":0.023510962248523386,"score_gpt":0.2247832199478363,"score_spread":0.2012722576993129,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4232953936","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96476537,0.025616324,0.0016736962,0.0005553862,0.0045299176,0.00029104497,0.00035039202,0.000063117186,0.002154727],"genre_scores_gemma":[0.9959558,0.00024943682,0.00024800873,0.0017595363,0.00009427262,0.000015328378,0.0002449931,0.000043555938,0.0013890335],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966163,0.00034299245,0.00083457015,0.00052769104,0.00034163668,0.0013367968],"domain_scores_gemma":[0.9980476,0.0001872742,0.00046827664,0.00055111205,0.0005371226,0.0002085958],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000838729,0.0004996981,0.00064705283,0.00006372045,0.001052053,0.0001624923,0.0011254763,0.0002131561,0.0005483037],"category_scores_gemma":[0.00017430416,0.00041289194,0.00010957584,0.00030862165,0.0002330437,0.00033646377,0.00028094286,0.0007044066,0.00013815582],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005025525,0.00029623974,0.0061870026,0.000026255975,0.00037869072,0.00068094727,0.0015821744,0.00019103724,0.8492844,0.0007871375,0.12749521,0.012588321],"study_design_scores_gemma":[0.012880271,0.0011219387,0.013450196,0.00021501936,0.0001774942,0.009735996,0.008898584,0.00008129684,0.41095355,0.0011988308,0.53879744,0.0024893826],"about_ca_topic_score_codex":0.96862745,"about_ca_topic_score_gemma":0.93477666,"teacher_disagreement_score":0.43833086,"about_ca_system_score_codex":0.0017555351,"about_ca_system_score_gemma":0.011920377,"threshold_uncertainty_score":0.9998323},"labels":[],"label_agreement":null},{"id":"W4247081887","doi":"10.14785/lpsn-2015-0904","title":"Abstracts from The Immunodeficiency Canada–CSACI symposium","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children; Western University; SickKids Foundation; University of Toronto; London Health Sciences Centre","funders":"","keywords":"Immunodeficiency; Psychology; Medicine; Immunology","score_opus":0.012681626668319833,"score_gpt":0.1990300832783595,"score_spread":0.18634845661003965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4247081887","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.792554,0.17676927,0.00070794165,0.0054287636,0.009721479,0.00024515318,0.00006725356,0.00008345435,0.01442264],"genre_scores_gemma":[0.9971137,0.00024856345,0.000019677527,0.0014099283,0.000036132293,0.0000064034443,0.000047046935,0.00002283538,0.0010957074],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980891,0.0002324648,0.0005966602,0.00024264965,0.00017047006,0.00066870643],"domain_scores_gemma":[0.9987888,0.00022558002,0.00031699386,0.00046147424,0.000176377,0.00003078822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078033697,0.00026167743,0.00027110399,0.000045419918,0.000859966,0.0001153035,0.00096771645,0.0001674801,0.00037059933],"category_scores_gemma":[0.00016877973,0.00017353504,0.00013045574,0.00019084993,0.00022969194,0.00019191137,0.000094774005,0.00060382346,0.00040169808],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010660352,0.00087977207,0.0049333354,0.000010099083,0.001318908,0.0002613356,0.016579136,0.0033369877,0.5902846,0.002001896,0.3245157,0.054812197],"study_design_scores_gemma":[0.005712725,0.00022397542,0.022244269,0.00010127788,0.00016292359,0.0020278366,0.010343073,0.000038259863,0.029297423,0.002087249,0.92701566,0.000745322],"about_ca_topic_score_codex":0.27743962,"about_ca_topic_score_gemma":0.0057677175,"teacher_disagreement_score":0.60249996,"about_ca_system_score_codex":0.00029970056,"about_ca_system_score_gemma":0.0022829259,"threshold_uncertainty_score":0.727372},"labels":[],"label_agreement":null},{"id":"W4247272362","doi":"10.14785/lpsn-2015-0902","title":"2014 Joint Immunodeficiency Canada/Israel Association of Allergy and Clinical Immunology SymposiumDecember 4, 2014Dan Carmel HotelHaifa, Israel","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Immunodeficiency; Clinical immunology; Allergy; Immunology; Primary immunodeficiency; Medicine; Human immunodeficiency virus (HIV); Association (psychology); Immune system; Psychology","score_opus":0.01304832086278352,"score_gpt":0.23222847437838381,"score_spread":0.2191801535156003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4247272362","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85817254,0.12836023,0.0009692577,0.0012376423,0.007226225,0.00034706376,0.000045996967,0.00005417732,0.0035868944],"genre_scores_gemma":[0.9921152,0.004524488,0.0000761887,0.00047595013,0.000036443576,0.000011180307,0.000049144644,0.000042767693,0.0026686518],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9959915,0.00078258896,0.0015995452,0.00044048388,0.00025008578,0.00093575695],"domain_scores_gemma":[0.9973752,0.0002682908,0.0012497385,0.0004741285,0.0005673225,0.00006535206],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0023924925,0.000401206,0.00088182755,0.0002098162,0.0004562254,0.000053986358,0.0005674859,0.00062287634,0.00015776455],"category_scores_gemma":[0.0004637217,0.00036057588,0.0002838054,0.00021166935,0.0004210183,0.0002544503,0.00020558326,0.00087674265,0.00011230769],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031398996,0.0035995613,0.112281926,0.00007770208,0.011278312,0.00015923056,0.0060542,0.00079314824,0.51235366,0.0094521735,0.25687072,0.08393949],"study_design_scores_gemma":[0.04048805,0.003453893,0.2550136,0.00041861794,0.0009999704,0.0053257756,0.023821726,0.0005100329,0.038174476,0.0019267446,0.6267573,0.003109755],"about_ca_topic_score_codex":0.12531842,"about_ca_topic_score_gemma":0.00744038,"teacher_disagreement_score":0.47417918,"about_ca_system_score_codex":0.00064585917,"about_ca_system_score_gemma":0.0022841566,"threshold_uncertainty_score":0.9998846},"labels":[],"label_agreement":null},{"id":"W4247575608","doi":"10.14785/lpsn-2015-0901","title":"Immunodeficiency Canada Satellite Symposium at 2014 Canadian Society of Allergy and Clinical Immunology Annual Scientific MeetingOctober 23, 2014Delta Ottawa CentreOttawa, ON","year":2015,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Memorial University of Newfoundland; University of British Columbia; Janeway Children's Health and Rehabilitation Centre; British Columbia Children's Hospital; Child and Family Research Institute","funders":"Immunodeficiency Canada","keywords":"Clinical immunology; Satellite; Human immunodeficiency virus (HIV); Medicine; Immunology; Allergy; Engineering","score_opus":0.010014291230211456,"score_gpt":0.2228709518778743,"score_spread":0.21285666064766284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4247575608","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84218943,0.14040427,0.000039690487,0.0018838902,0.008919581,0.00031594592,0.00023437513,0.000042948326,0.0059698503],"genre_scores_gemma":[0.9869258,0.0041681225,0.0000864518,0.0008790694,0.00002997764,0.000005672075,0.0001961888,0.000052693485,0.007656046],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99583346,0.0005673642,0.0013580353,0.0006580191,0.00024888446,0.001334255],"domain_scores_gemma":[0.9977851,0.00023493478,0.00068002753,0.0006398842,0.0005008337,0.00015922851],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.002194031,0.0004571551,0.000696673,0.000246976,0.0013214776,0.000086226944,0.0008334441,0.0005054448,0.00034436764],"category_scores_gemma":[0.00013528076,0.00040695083,0.00033268702,0.0003071897,0.0013978229,0.00020640797,0.00021562382,0.0007352379,0.00018754082],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010862702,0.0010817224,0.027856154,0.0000367018,0.0030645332,0.00009362339,0.007841066,0.00044568477,0.112260714,0.0018057073,0.8296383,0.014789515],"study_design_scores_gemma":[0.0047942335,0.000634129,0.018126043,0.0001031906,0.00009561367,0.0009922336,0.0039076246,0.0000588709,0.006260001,0.000107364736,0.9642693,0.00065143075],"about_ca_topic_score_codex":0.60003614,"about_ca_topic_score_gemma":0.42475292,"teacher_disagreement_score":0.1752832,"about_ca_system_score_codex":0.0008583271,"about_ca_system_score_gemma":0.004686387,"threshold_uncertainty_score":0.99997866},"labels":[],"label_agreement":null},{"id":"W4280646605","doi":"10.14785/lymphosign-2022-0004","title":"CTLA4 haploinsufficiency caused by a novel heterozygous splice site mutation","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Haploinsufficiency; Immune dysregulation; Autoimmunity; Immunology; Exome sequencing; Compound heterozygosity; Autoimmune lymphoproliferative syndrome; Immune system; Proband; Common variable immunodeficiency; Medicine; Mutation; Biology; Genetics; Phenotype; Antibody; Gene; Fas receptor","score_opus":0.007523260120353482,"score_gpt":0.20670951371058421,"score_spread":0.19918625359023073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280646605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9229828,0.055703484,0.017243292,0.00042263087,0.0023122893,0.00024521322,0.00011738707,0.000120835844,0.0008520401],"genre_scores_gemma":[0.9969472,0.00010174262,0.00003261232,0.00087128324,0.0000092950295,0.000036697398,0.00015474176,0.000032314005,0.0018140974],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99819744,0.0002183509,0.0005106591,0.00031077137,0.00014232707,0.0006204635],"domain_scores_gemma":[0.9992408,0.00007903128,0.00033718918,0.00025452147,0.00007074332,0.000017695282],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00058702234,0.00023839403,0.0002666836,0.00019181996,0.0020334225,0.00005034111,0.00049241696,0.00010725007,0.0016739796],"category_scores_gemma":[0.0000420224,0.0002354502,0.00018321785,0.00036736552,0.00014455343,0.00019510437,0.00013891389,0.00064283144,0.0002789592],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016100846,0.0009187514,0.00012842461,0.000005670567,0.00010440237,0.0000390593,0.004914554,0.0010733557,0.97321993,0.00013989025,0.0058935788,0.013401353],"study_design_scores_gemma":[0.0257314,0.0036913233,0.0048552495,0.000079924794,0.00029638037,0.025037603,0.018859524,0.0018843296,0.074328855,0.00055239815,0.8424822,0.0022007944],"about_ca_topic_score_codex":0.00018230299,"about_ca_topic_score_gemma":0.0000012583637,"teacher_disagreement_score":0.8988911,"about_ca_system_score_codex":0.00023132245,"about_ca_system_score_gemma":0.0001998241,"threshold_uncertainty_score":0.9992658},"labels":[],"label_agreement":null},{"id":"W4281478505","doi":"10.14785/lymphosign-2022-0005","title":"An unusual presentation of DiGeorge syndrome","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Congenital heart defects research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"DiGeorge syndrome; Hypoparathyroidism; Medicine; Presentation (obstetrics); Pediatrics; Facial dysmorphism; Internal medicine; Surgery; Biology; Psychiatry; Genetics","score_opus":0.010928713977040842,"score_gpt":0.2941385121762479,"score_spread":0.2832097981992071,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281478505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805206,0.0005146552,0.0007683514,0.000041836556,0.00014714293,0.000098141536,0.000020290652,0.0000041138937,0.00035338633],"genre_scores_gemma":[0.9992109,0.000029808718,0.00015721713,0.000041648378,0.00009726487,0.0000126688965,0.000039032388,0.00001584646,0.00039563482],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989634,0.0001873964,0.00017307821,0.00014361895,0.00033494018,0.00019757455],"domain_scores_gemma":[0.9995392,0.000011361494,0.00006815055,0.00018889633,0.000076610835,0.000115796705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035865628,0.00006866107,0.000088235,0.00008324525,0.00020439754,0.000024907298,0.00023548128,0.000032077493,0.00025124496],"category_scores_gemma":[0.000026456935,0.00006998581,0.00007491213,0.00012926095,0.00003933032,0.0000073265965,0.00012460176,0.000115650946,0.0000039924503],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021016518,0.0001774941,0.007620419,0.000009375855,0.000050096634,0.00008401904,0.000114892326,0.00022606866,0.98050725,0.00004559057,0.001219401,0.0097352285],"study_design_scores_gemma":[0.0043903696,0.012623394,0.072728164,0.000019008146,0.00005933067,0.022140492,0.0017341292,0.001441813,0.8485158,0.00127759,0.034410015,0.0006598946],"about_ca_topic_score_codex":0.00001936381,"about_ca_topic_score_gemma":0.0000036062431,"teacher_disagreement_score":0.13199145,"about_ca_system_score_codex":0.0000404254,"about_ca_system_score_gemma":0.00020210016,"threshold_uncertainty_score":0.28539383},"labels":[],"label_agreement":null},{"id":"W4281843400","doi":"10.14785/lymphosign-2022-0007","title":"Novel heterozygous <i>FOXN1</i> mutation identified following newborn screening for severe combined immunodeficiency is associated with improving immune parameters","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Severe combined immunodeficiency; Immunodeficiency; Immune system; Mutation; Hematopoietic stem cell transplantation; Newborn screening; Immunology; Heterozygote advantage; T cell; Transplantation; Biology; Medicine; Gene; Genetics; Genotype; Internal medicine","score_opus":0.01424758790710228,"score_gpt":0.21942512417183385,"score_spread":0.20517753626473156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281843400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.81509846,0.0126198605,0.16812052,0.0002447885,0.0026285443,0.0008536261,0.00012687212,0.00016881218,0.00013848988],"genre_scores_gemma":[0.99632597,0.000014256274,0.0015332086,0.0006109792,0.0000062278873,0.00015725776,0.00036647983,0.000087334,0.00089830364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99688864,0.00028601327,0.00096762413,0.000537402,0.00023615522,0.0010841498],"domain_scores_gemma":[0.99807996,0.00034998773,0.00096719345,0.0003997521,0.00017898294,0.000024122353],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0015458699,0.0004517844,0.00063327566,0.00032272196,0.004077052,0.00022976281,0.0008070993,0.00018767673,0.00018357483],"category_scores_gemma":[0.00019863607,0.00043449394,0.0006009398,0.00059570797,0.00015519642,0.00049901684,0.00020066113,0.00080280396,0.000013439741],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020191884,0.0008919521,0.0002939397,0.000022688968,0.00148056,0.00006282664,0.005383805,0.0060200333,0.9204356,0.00009012524,0.0003848043,0.06291449],"study_design_scores_gemma":[0.33259293,0.030094344,0.03293875,0.002582024,0.006744505,0.046943378,0.1298163,0.02719908,0.33304465,0.004903003,0.038773485,0.014367584],"about_ca_topic_score_codex":0.0002970628,"about_ca_topic_score_gemma":0.0000024670276,"teacher_disagreement_score":0.58739096,"about_ca_system_score_codex":0.00036730396,"about_ca_system_score_gemma":0.00032625173,"threshold_uncertainty_score":0.9998107},"labels":[],"label_agreement":null},{"id":"W4283377515","doi":"10.14785/lymphosign-2022-0003","title":"2022 Canadian resource guides for individuals and families affected by primary immunodeficiency","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Takeda Canada; Grifols; IWK Health Centre; Immunodeficiency Canada; BC Children's Hospital","keywords":"Primary immunodeficiency; Novelty; Resource (disambiguation); Primary care; Immunodeficiency; Medicine; Work (physics); Family medicine; Psychology; Computer science; Immunology; Social psychology; Engineering","score_opus":0.006330698518263415,"score_gpt":0.21856715062888513,"score_spread":0.2122364521106217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283377515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97902197,0.011882471,0.0003531368,0.0033108895,0.00042771886,0.00085102365,0.00039635747,0.00007345941,0.0036829973],"genre_scores_gemma":[0.9940164,0.00036083543,0.0005476638,0.0030015633,0.000087117834,0.00016193831,0.00011391418,0.00004389404,0.0016666794],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99851364,0.00010270655,0.00031185432,0.000248978,0.00039171652,0.00043111484],"domain_scores_gemma":[0.99915063,0.00009282951,0.00013863514,0.00017513034,0.00005307747,0.0003897147],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051348656,0.00018280635,0.00028894885,0.00034977548,0.0012270192,0.00007919468,0.00012671531,0.00005134895,0.00023378362],"category_scores_gemma":[0.00007657381,0.00016587994,0.00011249227,0.0002540986,0.00005701418,0.00006592878,0.000059852948,0.0002471039,0.000003824618],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093653897,0.0012436683,0.043970387,0.00015327465,0.0010942369,0.00082665787,0.0035860157,0.00009356588,0.39609236,0.00033382542,0.35548314,0.19618633],"study_design_scores_gemma":[0.00921563,0.0029961835,0.07108836,0.00006303336,0.0003294356,0.01754431,0.002104119,0.0002490258,0.003333632,0.00032998013,0.89230216,0.00044413048],"about_ca_topic_score_codex":0.002027379,"about_ca_topic_score_gemma":0.00018873929,"teacher_disagreement_score":0.53681904,"about_ca_system_score_codex":0.0010812108,"about_ca_system_score_gemma":0.0005913431,"threshold_uncertainty_score":0.94373643},"labels":[],"label_agreement":null},{"id":"W4293693550","doi":"10.14785/lymphosign-2022-0010","title":"A novel variant in <i>RUNX1</i> in a patient with refractory eosinophilic gastrointestinal disease and long-term clinical response to ketotifen","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Eosinophilic Esophagitis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Ketotifen; Medicine; Eosinophilic esophagitis; Eosinophilic; Eosinophilic gastroenteritis; Eosinophilia; Etiology; Internal medicine; Gastroenterology; Pediatrics; Dermatology; Disease; Asthma; Pathology","score_opus":0.020786059378330644,"score_gpt":0.2853433484197863,"score_spread":0.26455728904145565,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293693550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936848,0.00086536264,0.00061818125,0.0038567116,0.00016306213,0.0007123662,0.00003433742,0.000027495098,0.000037649144],"genre_scores_gemma":[0.9930242,0.00004032574,0.0033545052,0.0031682984,0.000195517,0.00009030411,0.000007860923,0.000059931772,0.00005907618],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99644405,0.0005968995,0.0009809874,0.00057613826,0.00078216475,0.0006197815],"domain_scores_gemma":[0.99762714,0.0004643069,0.0002712121,0.00041817818,0.000098774326,0.001120387],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0019514267,0.00029716658,0.0005483423,0.0006130251,0.00017452629,0.00006177872,0.00021382661,0.000046596793,0.00012442052],"category_scores_gemma":[0.0007732616,0.0002627737,0.000102967286,0.0005991005,0.00014557903,0.00014872703,0.0002507708,0.0010158755,0.000006670408],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.046719585,0.0027207553,0.8369014,0.000036359637,0.000042837117,0.09954485,0.0010834048,0.00016086032,0.007370564,0.00001711984,0.00044374005,0.0049585165],"study_design_scores_gemma":[0.009728617,0.006877161,0.8794739,0.0007629327,0.00006667641,0.10229738,0.00016176725,0.00016207992,0.0000184565,0.000040597948,0.00016351191,0.00024686658],"about_ca_topic_score_codex":0.000053481,"about_ca_topic_score_gemma":0.000040720428,"teacher_disagreement_score":0.042572547,"about_ca_system_score_codex":0.0009580518,"about_ca_system_score_gemma":0.0014734643,"threshold_uncertainty_score":0.9999825},"labels":[],"label_agreement":null},{"id":"W4293702572","doi":"10.14785/lymphosign-2022-0011","title":"Association between <i>NOD2</i> and autoinflammation presenting as Yellow Nail Syndrome","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Lymphatic Disorders and Treatments","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Lymphedema; Medicine; Dermatology; NOD2; Bronchiectasis; Nail (fastener); Immunology; Internal medicine; Immune system; Cancer; Innate immune system","score_opus":0.008651898577109384,"score_gpt":0.23659298946198717,"score_spread":0.2279410908848778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293702572","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927295,0.00042637056,0.00014828888,0.0018492432,0.00022876363,0.00021997197,0.0000062265703,0.00003842561,0.004353199],"genre_scores_gemma":[0.99421984,0.000089086665,0.00036637907,0.0002616744,0.00013438746,0.000019551491,0.000030096657,0.000022315802,0.004856672],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985929,0.00009154045,0.0003015387,0.00015363473,0.00060660864,0.0002537856],"domain_scores_gemma":[0.99931246,0.00008561338,0.00029981247,0.00010014121,0.000055375796,0.00014662283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004993323,0.0001175624,0.00023319914,0.00011089861,0.0005413584,0.00009214099,0.00006568656,0.000046667337,0.00045469456],"category_scores_gemma":[0.000079886566,0.00010762196,0.000084568645,0.00015474366,0.000014736908,0.00017550022,0.00006721898,0.00012730258,0.00003264834],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006742677,0.00022803339,0.9372468,0.000034545308,0.001042772,0.00078593736,0.0013668523,0.000023208473,0.00034901022,0.00009236575,0.009267426,0.0494956],"study_design_scores_gemma":[0.019185025,0.0016948223,0.9092943,0.00017712695,0.0018598755,0.016925955,0.0016620319,0.0014535006,0.0008608797,0.010894098,0.035453416,0.0005389672],"about_ca_topic_score_codex":0.000049416743,"about_ca_topic_score_gemma":5.8188823e-7,"teacher_disagreement_score":0.048956633,"about_ca_system_score_codex":0.0006250224,"about_ca_system_score_gemma":0.00018484458,"threshold_uncertainty_score":0.49785867},"labels":[],"label_agreement":null},{"id":"W4293842733","doi":"10.14785/lymphosign-2022-0009","title":"Case series of COVID-19 outcomes in adult patients with inborn errors of immunity","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Medicine; Pediatrics; Comorbidity; Vaccination; Retrospective cohort study; Population; Cohort; Disease; Internal medicine; Intensive care medicine; Immunology","score_opus":0.009940623088938352,"score_gpt":0.2266111761673719,"score_spread":0.21667055307843353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293842733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968339,0.0021605862,0.000088694236,0.00015020797,0.00038008916,0.00016634299,0.00009418495,0.000011287566,0.00011470432],"genre_scores_gemma":[0.99953586,0.000037112502,0.00003675907,0.00018457539,6.3888916e-7,0.000014340551,0.00003819727,0.000012932765,0.00013960016],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99840873,0.00047684673,0.00059482723,0.00013123192,0.000096078256,0.0002922866],"domain_scores_gemma":[0.9990106,0.000120003795,0.0004881447,0.00024121869,0.00012638004,0.000013657468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005016769,0.00016210694,0.0004080024,0.00027274046,0.0005134823,0.00000581528,0.0003411447,0.00007240955,0.0006771324],"category_scores_gemma":[0.0001838493,0.00013071927,0.00011138267,0.00034465682,0.00032279972,0.00014643968,0.00013897465,0.000434309,0.0000031519903],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005017174,0.0037984324,0.92529064,0.00013161014,0.0006514451,0.00069081533,0.030007675,0.0027526924,0.024234926,0.0013455361,0.0003252801,0.0057537574],"study_design_scores_gemma":[0.100981064,0.014308314,0.5186953,0.00032144735,0.0005322366,0.06685127,0.23581238,0.00004098051,0.03920719,0.0032376354,0.017370153,0.0026420208],"about_ca_topic_score_codex":0.001091315,"about_ca_topic_score_gemma":0.000031548832,"teacher_disagreement_score":0.40659535,"about_ca_system_score_codex":0.00014125029,"about_ca_system_score_gemma":0.00042013265,"threshold_uncertainty_score":0.7414125},"labels":[],"label_agreement":null},{"id":"W4309920116","doi":"10.14785/lymphosign-2022-0008","title":"Distribution of polyclonal hypergammaglobulinemia in different phases of chronic hepatitis B infection","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Hypergammaglobulinemia; Polyclonal antibodies; Medicine; Immunology; Incidence (geometry); Immune system; Internal medicine; Antibody; Gastroenterology","score_opus":0.013878891839632186,"score_gpt":0.26210593202441046,"score_spread":0.24822704018477829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4309920116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953193,0.0016743069,0.002001845,0.0002611334,0.00036992485,0.00015251577,0.00009996572,0.000011095388,0.00010993186],"genre_scores_gemma":[0.99796003,0.0015751404,0.000063035666,0.000037640184,0.00023937317,0.000021903283,0.000053765234,0.000011789935,0.000037343932],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99854666,0.00009963784,0.00056011527,0.000119150005,0.0004634492,0.00021100095],"domain_scores_gemma":[0.99935764,0.000061505234,0.0002893075,0.000110234316,0.00010736932,0.000073934265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023494194,0.00012439169,0.00039770262,0.00016551235,0.00012699705,0.000004782082,0.00006563001,0.000034763547,0.0005814933],"category_scores_gemma":[0.00012133977,0.0001086282,0.00014026015,0.00029087046,0.000075326054,0.000059029375,0.00007304213,0.00023340796,0.0000011739016],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025232203,0.000627334,0.9627978,0.000060297654,0.0000825793,0.00006377918,0.00017052416,0.00016239245,0.02108332,0.00009411492,0.0020045629,0.012600931],"study_design_scores_gemma":[0.0031471192,0.0018096237,0.9719233,0.00018748638,0.00008673781,0.0009013501,0.000023304548,0.00062097056,0.018740887,0.00018321622,0.0022702152,0.000105805055],"about_ca_topic_score_codex":0.003422928,"about_ca_topic_score_gemma":0.0006191199,"teacher_disagreement_score":0.012495127,"about_ca_system_score_codex":0.0012786494,"about_ca_system_score_gemma":0.00032106464,"threshold_uncertainty_score":0.6366944},"labels":[],"label_agreement":null},{"id":"W4310102582","doi":"10.14785/lymphosign-2022-0014","title":"Whole exome sequencing identifies causative compound heterozygous variants in <i>PRF1</i> in late-onset familial hemophagocytic lymphohistiocytosis","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Autoimmune and Inflammatory Disorders Research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Hemophagocytic lymphohistiocytosis; Exome sequencing; Compound heterozygosity; Missense mutation; Cytopenia; Exome; Immunology; Medicine; Immune dysregulation; Pancytopenia; Hepatosplenomegaly; Perforin; Disease; Biology; Immune system; Mutation; Genetics; Gene; Internal medicine; CD8; Bone marrow","score_opus":0.02801717144901453,"score_gpt":0.2812874557421663,"score_spread":0.25327028429315174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310102582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957065,0.0018609723,0.00016373816,0.00040337138,0.0004882942,0.00045329996,0.000030258321,0.00003691184,0.00085664936],"genre_scores_gemma":[0.9974062,0.0002454031,0.00010146412,0.0007430819,0.00009352272,0.00008907343,0.000036289817,0.000053101674,0.0012318816],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9962347,0.00050833495,0.0010370798,0.00041129746,0.0009986864,0.0008098951],"domain_scores_gemma":[0.9989227,0.00014973848,0.00026793775,0.0003377191,0.000109644454,0.00021224968],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015581842,0.00029942166,0.0007175843,0.0008928963,0.0005650654,0.00013110632,0.00037399153,0.00010769277,0.000657401],"category_scores_gemma":[0.0001596554,0.00030595495,0.00017675666,0.0008943682,0.00016205406,0.0004017785,0.00025487514,0.0009217356,0.000080670376],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008193071,0.0025763456,0.35023272,0.0006254102,0.0007798099,0.07000785,0.05210199,0.03284859,0.4552709,0.00012214712,0.01636866,0.010872503],"study_design_scores_gemma":[0.084543936,0.004303261,0.70602876,0.00213993,0.00033016197,0.041500367,0.048118033,0.071277976,0.02130156,0.007963682,0.009363768,0.003128544],"about_ca_topic_score_codex":0.00085285545,"about_ca_topic_score_gemma":0.00008830691,"teacher_disagreement_score":0.43396935,"about_ca_system_score_codex":0.0044355365,"about_ca_system_score_gemma":0.0019907786,"threshold_uncertainty_score":0.99993926},"labels":[],"label_agreement":null},{"id":"W4310102605","doi":"10.14785/lymphosign-2022-0013","title":"Heterogeneous phenotype of autoinflammatory disease in a patient with mutations in <i>NOD2</i> and <i>MEFV</i> genes","year":2022,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Inflammasome and immune disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of British Columbia; Hospital for Sick Children; University of Toronto","funders":"","keywords":"MEFV; Familial Mediterranean fever; NOD2; Medicine; Genetics; Compound heterozygosity; Disease; Gene mutation; Phenotype; Biology; Mutation; Gene; Internal medicine","score_opus":0.003061721519040683,"score_gpt":0.1833754722561799,"score_spread":0.1803137507371392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310102605","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926613,0.006894315,0.000107232685,0.00005678629,0.000057818314,0.00012061446,0.00001160021,0.000002306181,0.00008804662],"genre_scores_gemma":[0.99930406,0.00029251634,0.00013741826,0.000162916,0.00001784589,0.000033521992,0.000023303544,0.000015445865,0.00001296227],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99919933,0.000085745465,0.00025712285,0.00014612348,0.00013563104,0.0001760321],"domain_scores_gemma":[0.9996577,0.0000065742306,0.00012142565,0.00012314373,0.00003131265,0.00005985285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012164005,0.00010036465,0.00011360521,0.00009724051,0.000097416436,0.000012258931,0.000097094264,0.000024792887,0.000022704595],"category_scores_gemma":[0.000010341405,0.00009471907,0.000040685863,0.00011135452,0.00005532979,0.0000063206694,0.00007676634,0.00008538386,3.874459e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003639029,0.0007822749,0.25250855,0.00008140487,0.00016328228,0.0012218226,0.0032247002,0.1056736,0.59012896,0.00010573107,0.0003835779,0.042087052],"study_design_scores_gemma":[0.04723403,0.014248679,0.18165469,0.0005575466,0.00037571177,0.008020192,0.014816169,0.008559071,0.5996173,0.004244176,0.116236985,0.004435424],"about_ca_topic_score_codex":0.000026205944,"about_ca_topic_score_gemma":0.00004016233,"teacher_disagreement_score":0.11585341,"about_ca_system_score_codex":0.00003277387,"about_ca_system_score_gemma":0.00023531115,"threshold_uncertainty_score":0.38625318},"labels":[],"label_agreement":null},{"id":"W4323538062","doi":"10.14785/lymphosign-2023-0001","title":"Identification of a novel <i>NFKB2</i> mutation in a patient presenting with autoimmune cytopenia and generalized granulomatous lymphadenopathy","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Cytopenia; Primary immunodeficiency; Immunology; Medicine; Immunodeficiency; Exome sequencing; Immune system; Biology; Mutation; Gene; Genetics; Bone marrow","score_opus":0.008457059053485446,"score_gpt":0.22102572797369888,"score_spread":0.21256866892021342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323538062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896677,0.008149032,0.0013857782,0.0001093982,0.0003110933,0.00025949298,0.000010004802,0.00004940507,0.000058090536],"genre_scores_gemma":[0.9993855,0.00027489947,0.00008888466,0.000038857354,0.0000029508362,0.000029069824,0.000040375926,0.000021353248,0.00011810831],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984104,0.00014803554,0.0007468553,0.00022702123,0.00009751516,0.00037018544],"domain_scores_gemma":[0.99913967,0.000073887044,0.0004972523,0.00018115099,0.00009849972,0.000009559045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005913144,0.00017366726,0.00030911653,0.00036325515,0.00028661854,0.00005238463,0.00018726503,0.00011786663,0.000019609077],"category_scores_gemma":[0.00006103659,0.00014694926,0.000062064006,0.0005789199,0.000170757,0.00024155705,0.0000598891,0.00015241356,0.000020982892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029683835,0.00024788186,0.002229335,0.0000330116,0.00007709109,0.000051380714,0.006931257,0.0010945654,0.9770612,0.00033538498,0.000048289126,0.011593739],"study_design_scores_gemma":[0.041656964,0.0011593773,0.35210225,0.0007841588,0.00026067623,0.012981201,0.013925755,0.009065886,0.56234896,0.0021011825,0.0022335814,0.0013799787],"about_ca_topic_score_codex":0.00014198628,"about_ca_topic_score_gemma":0.000003278735,"teacher_disagreement_score":0.41471225,"about_ca_system_score_codex":0.000049646056,"about_ca_system_score_gemma":0.00011840918,"threshold_uncertainty_score":0.5992417},"labels":[],"label_agreement":null},{"id":"W4327710966","doi":"10.14785/lymphosign-2023-0002","title":"A novel <i>STAT3</i> splice-site variant in a kindred with autosomal dominant hyper IgE syndrome","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Splice site mutation; Exon; splice; Biology; Proband; Mutation; Genetics; RNA splicing; Immunology; Gene; Alternative splicing; RNA","score_opus":0.00867428289733729,"score_gpt":0.20460819451141762,"score_spread":0.19593391161408033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4327710966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886073,0.006935062,0.0018469074,0.00046753304,0.0009933686,0.0002760037,0.000032605974,0.00011019091,0.0007310193],"genre_scores_gemma":[0.99790794,0.00026417358,0.00014659738,0.0003075678,0.000009077907,0.00003335552,0.00005053568,0.000046993897,0.0012337517],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977449,0.00013574047,0.0005902429,0.00038704634,0.00011691514,0.001025139],"domain_scores_gemma":[0.99921983,0.000116948,0.00024174312,0.00033156597,0.00006396132,0.000025918182],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007192674,0.0003305095,0.00049466855,0.00046748488,0.0004792946,0.000057434456,0.00044819355,0.00025538617,0.00028344558],"category_scores_gemma":[0.00004094559,0.00025647425,0.00015565156,0.0009079395,0.00022277629,0.0002625619,0.000102803846,0.00060235785,0.0010866368],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010261614,0.0006672172,0.0014713104,0.000026851545,0.00023988243,0.002392695,0.004847242,0.00039977714,0.97949016,0.0005514261,0.0007775947,0.008109707],"study_design_scores_gemma":[0.07480424,0.003667975,0.38796848,0.0021166804,0.00044519722,0.34526417,0.011153575,0.0010527273,0.051909015,0.0013128335,0.11660586,0.0036992603],"about_ca_topic_score_codex":0.00033040307,"about_ca_topic_score_gemma":0.000017228138,"teacher_disagreement_score":0.92758113,"about_ca_system_score_codex":0.00012204726,"about_ca_system_score_gemma":0.00036339808,"threshold_uncertainty_score":0.99998873},"labels":[],"label_agreement":null},{"id":"W4361265489","doi":"10.14785/lymphosign-2023-0004","title":"Identification of novel compound heterozygous <i>LRBA</i> mutations associated with recurrent hemophagocytic lymphohistiocytosis and CNS manifestations","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Compound heterozygosity; Hemophagocytic lymphohistiocytosis; Medicine; Immunology; Missense mutation; Exome sequencing; Autoimmunity; Internal medicine; Biology; Mutation; Immune system; Genetics; Disease","score_opus":0.01637298839474666,"score_gpt":0.2416614648764418,"score_spread":0.22528847648169514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361265489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893487,0.004312697,0.005065132,0.00017963894,0.0005924245,0.0001929015,0.00011075282,0.00008406132,0.00011366826],"genre_scores_gemma":[0.9989341,0.0002644928,0.00003630151,0.00004901248,0.0000040657965,0.000020871443,0.00023700025,0.000021417585,0.00043273138],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986531,0.000115321986,0.00058815954,0.00021245133,0.00009750817,0.00033342568],"domain_scores_gemma":[0.99887216,0.00023918894,0.0004937044,0.00017148282,0.0002069747,0.000016517723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044264356,0.00017642397,0.00025369285,0.00027819426,0.00071071455,0.000058735583,0.00019111019,0.000114866576,0.000033472646],"category_scores_gemma":[0.00013927103,0.00015823255,0.000081850056,0.0005280875,0.0003443024,0.0001833904,0.000034842662,0.0001731633,0.00004863842],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025150875,0.0010115842,0.0014819269,0.00005117715,0.00066611485,0.000042008174,0.0053375624,0.0018779971,0.9771931,0.0010912732,0.00082393683,0.010171782],"study_design_scores_gemma":[0.06982274,0.004114415,0.6139254,0.0025331723,0.002804987,0.022885466,0.028804744,0.019027727,0.22113399,0.0052837436,0.005809183,0.003854449],"about_ca_topic_score_codex":0.000034523062,"about_ca_topic_score_gemma":0.000005000519,"teacher_disagreement_score":0.7560591,"about_ca_system_score_codex":0.00013507702,"about_ca_system_score_gemma":0.00019434403,"threshold_uncertainty_score":0.6452536},"labels":[],"label_agreement":null},{"id":"W4361297552","doi":"10.14785/lymphosign-2023-0003","title":"Lung histopathology evaluation of an X-MAID patient with a novel mutation in <i>MSN</i>","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Moesin; Radixin; Ezrin; Pathology; Lung; Medicine; Biology; Immunology; Internal medicine; Cytoskeleton; Cell; Genetics","score_opus":0.014247833013862767,"score_gpt":0.25134351285899426,"score_spread":0.2370956798451315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4361297552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99263054,0.004935452,0.0011565443,0.00007536931,0.0005349582,0.00021149204,0.000008773085,0.00002880509,0.00041808622],"genre_scores_gemma":[0.9996732,0.000036346217,0.00006718029,0.0000671717,0.000003241697,0.000025198982,0.0000767398,0.000013610016,0.0000372988],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986693,0.00030690522,0.0004216924,0.00017615593,0.00012306473,0.00030288438],"domain_scores_gemma":[0.9993129,0.000050054165,0.00028054704,0.00016026423,0.00018877797,0.0000074844675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013520513,0.000124383,0.00020917419,0.0003431307,0.00015990116,0.000010607192,0.00015590449,0.00012463778,0.000118373464],"category_scores_gemma":[0.00007518492,0.000104113366,0.00005006142,0.0004297981,0.00012494266,0.00019710694,0.000021378217,0.00019472388,0.000028222166],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006349597,0.000644156,0.001601892,0.000018319348,0.000056821318,0.00007091725,0.011366312,0.01189934,0.8504523,0.00038692588,0.00018001352,0.12268805],"study_design_scores_gemma":[0.08022704,0.009637393,0.47493514,0.0012001802,0.0010358569,0.029113214,0.044149842,0.046936028,0.29545692,0.0067963228,0.008051516,0.0024605528],"about_ca_topic_score_codex":0.00007104141,"about_ca_topic_score_gemma":0.000009020967,"teacher_disagreement_score":0.55499536,"about_ca_system_score_codex":0.00015073745,"about_ca_system_score_gemma":0.00028755446,"threshold_uncertainty_score":0.42456198},"labels":[],"label_agreement":null},{"id":"W4378635638","doi":"10.14785/lymphosign-2023-0005","title":"Management of newborn screening for severe combined immunodeficiency at a quaternary referral centre—an updated algorithm","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Referral; Pediatrics; Severe combined immunodeficiency; Newborn screening; Medicine; Intervention (counseling); Algorithm; Family medicine; Biology; Computer science","score_opus":0.020118546093276717,"score_gpt":0.25729698887972074,"score_spread":0.23717844278644404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378635638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93523806,0.011935594,0.04635882,0.0005323563,0.003089687,0.00095282285,0.00019692889,0.000374206,0.0013215143],"genre_scores_gemma":[0.9821866,0.0005677232,0.0046692654,0.00013746887,0.0000159431,0.000030522708,0.0015076129,0.000081801125,0.010803028],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977263,0.00018500737,0.00075351325,0.00036124443,0.00011082014,0.0008630991],"domain_scores_gemma":[0.99896574,0.000053652784,0.0004029388,0.00040617745,0.00014707514,0.000024407065],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00075520604,0.000305494,0.00042644885,0.00027917788,0.0008781876,0.000042179363,0.0006925268,0.00020924494,0.00054123555],"category_scores_gemma":[0.000009769545,0.000277656,0.00028292614,0.00047365014,0.00017644811,0.00025596956,0.00021674186,0.00023890332,0.00020678702],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030948773,0.001006316,0.0010353945,0.000097215256,0.001586527,0.00012831885,0.0041301046,0.0009622082,0.20960967,0.0015312347,0.00962281,0.76719534],"study_design_scores_gemma":[0.1137235,0.007815927,0.07890332,0.002212106,0.0019019363,0.006232914,0.06405339,0.034903504,0.13265266,0.010901454,0.5410135,0.0056858137],"about_ca_topic_score_codex":0.00007468698,"about_ca_topic_score_gemma":8.2449833e-7,"teacher_disagreement_score":0.7615095,"about_ca_system_score_codex":0.00010987217,"about_ca_system_score_gemma":0.00006995782,"threshold_uncertainty_score":0.9999676},"labels":[],"label_agreement":null},{"id":"W4380301763","doi":"10.14785/lymphosign-2023-0006","title":"Perspectives of women in science: data sharing in primary immunodeficiency","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Primary immunodeficiency; Sick child; Data sharing; Primary care; Human immunodeficiency virus (HIV); Family medicine; Immunodeficiency; Medicine; Data collection; Psychology; Pediatrics; Alternative medicine; Immunology; Sociology; Disease; Pathology","score_opus":0.02160370101648383,"score_gpt":0.2719400822672862,"score_spread":0.2503363812508024,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380301763","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97069865,0.026291229,0.00004013615,0.00009392271,0.00051302393,0.00011168207,0.00000859394,0.000032636504,0.00221012],"genre_scores_gemma":[0.9986875,0.0010106085,0.00002336678,0.000028700531,0.0000033614542,0.0000078306175,0.000021510034,0.0000134191905,0.00020369235],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975057,0.00009532685,0.000634303,0.0004716511,0.00013129252,0.001161727],"domain_scores_gemma":[0.99892557,0.00008663337,0.00020247707,0.0006993082,0.00007193068,0.000014105048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005815039,0.00015892266,0.0003720822,0.0012041136,0.00029767223,0.00004736476,0.002253734,0.00010847603,0.00018224929],"category_scores_gemma":[0.00039779535,0.0001461261,0.00005258155,0.0023456279,0.00073327456,0.000647012,0.0007528635,0.00043482872,0.000096799035],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022809774,0.00053014816,0.026331706,0.000031017764,0.00003839645,0.00004028241,0.059252735,0.00033506152,0.8895992,0.0013183998,0.00007683161,0.022218103],"study_design_scores_gemma":[0.007099045,0.00030887165,0.82091105,0.00041965095,0.0000141630535,0.00049893674,0.15223472,0.000673194,0.01080742,0.0047103125,0.0017046683,0.00061794516],"about_ca_topic_score_codex":0.00019995835,"about_ca_topic_score_gemma":0.000001931626,"teacher_disagreement_score":0.8787918,"about_ca_system_score_codex":0.0008118776,"about_ca_system_score_gemma":0.0008798464,"threshold_uncertainty_score":0.5958849},"labels":[],"label_agreement":null},{"id":"W4381735654","doi":"10.14785/lymphosign-2023-0007","title":"Novel heterozygous mutation in <i>NFKB2</i> in a patient with predominantly antibody deficiency","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Common variable immunodeficiency; Immune system; Antibody; Germinal center; Mutation; Immunodeficiency; Biology; Immunology; Genetics; Gene; Medicine; B cell","score_opus":0.007236766886906193,"score_gpt":0.22840143623560544,"score_spread":0.22116466934869924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381735654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990537,0.006132432,0.0017931062,0.000118716,0.00055502664,0.00024334496,0.0000075339326,0.00004945582,0.00056337746],"genre_scores_gemma":[0.9994341,0.00019791407,0.000058250374,0.00011411,0.000002977877,0.000023222781,0.000047004494,0.000021427997,0.000100994286],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983174,0.00012439734,0.00054346194,0.00026980907,0.00008867906,0.00065623893],"domain_scores_gemma":[0.9994807,0.00008149776,0.00020183677,0.00017507777,0.000050625953,0.000010248053],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047989137,0.00020573194,0.00028035548,0.0005429281,0.0002286535,0.000041981013,0.00025046646,0.00015028454,0.00004784505],"category_scores_gemma":[0.00005129016,0.00016616979,0.00007127144,0.00094857346,0.00013590294,0.00023160891,0.0000471914,0.00036383883,0.00017443219],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009008737,0.0011047708,0.007169811,0.000029160774,0.00004330855,0.0010352733,0.011760841,0.0059266216,0.9211484,0.00025367996,0.000171899,0.05045532],"study_design_scores_gemma":[0.08329851,0.009285454,0.58857363,0.0033202937,0.00017111018,0.07409178,0.049797494,0.0038342478,0.16591564,0.0029867354,0.01459708,0.004128055],"about_ca_topic_score_codex":0.00026767125,"about_ca_topic_score_gemma":0.000026476213,"teacher_disagreement_score":0.7552328,"about_ca_system_score_codex":0.00012035263,"about_ca_system_score_gemma":0.00018718088,"threshold_uncertainty_score":0.67762077},"labels":[],"label_agreement":null},{"id":"W4386268676","doi":"10.14785/lymphosign-2023-0008","title":"Neurodevelopmental disorder and immunodeficiency","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pediatric health and respiratory diseases","field":"Health Professions","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Primary immunodeficiency; Immunodeficiency; Medicine; Immune system; Acquired immune system; Epilepsy; Immunology; Neuroscience; Psychology; Psychiatry","score_opus":0.03736387800420154,"score_gpt":0.3796742439682362,"score_spread":0.34231036596403464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386268676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99351317,0.0024702926,0.00020048511,0.0006570072,0.0008756532,0.00019473938,0.000010799842,0.00012701777,0.0019508346],"genre_scores_gemma":[0.9892695,0.0041619,0.00013261053,0.004323186,0.00078304065,0.000046552595,0.000007809392,0.00003541264,0.001239981],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9982741,0.00023590952,0.0004373042,0.00015606618,0.00024294626,0.0006536687],"domain_scores_gemma":[0.9990857,0.00021655786,0.000140124,0.00010219939,0.000060366634,0.00039503124],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00071010407,0.000112102665,0.0001480929,0.00019054006,0.0018795241,0.000020067455,0.00013209759,0.00008615838,0.00032613095],"category_scores_gemma":[0.00019511621,0.000085329455,0.000040073643,0.00040151045,0.000044778695,0.00012522629,0.000092919974,0.000345783,0.0006843488],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007065649,0.000057333782,0.8700366,0.0001466834,0.000013607946,0.000127041,0.001231403,0.000008376724,0.00029947725,0.00021142473,0.0767534,0.051043995],"study_design_scores_gemma":[0.0016119948,0.00007130434,0.8631228,0.000055591838,0.000012816799,0.00006672045,0.0025130534,0.00014426622,0.0000017163682,0.00051927776,0.1317143,0.00016614658],"about_ca_topic_score_codex":0.000023092269,"about_ca_topic_score_gemma":0.0000012232025,"teacher_disagreement_score":0.054960903,"about_ca_system_score_codex":0.00008523271,"about_ca_system_score_gemma":0.001091273,"threshold_uncertainty_score":0.99941987},"labels":[],"label_agreement":null},{"id":"W4387080949","doi":"10.14785/lymphosign-2023-0009","title":"Abstracts of the Immunodeficiency Canada 10<sup>th</sup> PID Symposium, 19 October 2023, Ottawa","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Human immunodeficiency virus (HIV); Primary immunodeficiency; Medicine; Virology; Internal medicine; Disease","score_opus":0.009739462466587,"score_gpt":0.22652317408743008,"score_spread":0.2167837116208431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387080949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97730047,0.0007632152,0.000030031842,0.005967659,0.001158233,0.0003789255,0.000049547634,0.000073885414,0.01427804],"genre_scores_gemma":[0.98967314,0.00024120521,0.000036959307,0.0007036113,0.00019484092,0.000013685552,0.000008955743,0.000038074322,0.009089528],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9974008,0.000092930066,0.00074632716,0.00026876878,0.0009406797,0.0005504979],"domain_scores_gemma":[0.9984467,0.00014790035,0.00037439927,0.00049554504,0.00018446767,0.00035097392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004363653,0.00027270927,0.00040286465,0.00018302917,0.0004164009,0.000050742783,0.00030272023,0.00010538322,0.000602954],"category_scores_gemma":[0.00017344499,0.00017953085,0.0002787149,0.0007484779,0.000090464404,0.00008757829,0.00007242927,0.00033625338,0.00018158619],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009640881,0.0016500741,0.058476232,0.0003792411,0.0018047548,0.004944471,0.0022099663,0.02738861,0.4239507,0.0003656021,0.45955718,0.018309096],"study_design_scores_gemma":[0.013681914,0.0013780553,0.57516426,0.0009757846,0.00088941917,0.025751077,0.0016362655,0.004895881,0.064321496,0.00042661847,0.30988497,0.0009942458],"about_ca_topic_score_codex":0.040929057,"about_ca_topic_score_gemma":0.006338679,"teacher_disagreement_score":0.51668805,"about_ca_system_score_codex":0.00088446663,"about_ca_system_score_gemma":0.0020555097,"threshold_uncertainty_score":0.9654575},"labels":[],"label_agreement":null},{"id":"W4389039198","doi":"10.14785/lymphosign-2023-0010","title":"STAT5B germline heterozygous variant presenting with lymphadenopathy, atopy, and short stature","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Short stature; Atopy; Germline; Genetics; Biology; Medicine; Immunology; Pediatrics; Allergy; Gene","score_opus":0.00877057406035179,"score_gpt":0.2224641639585411,"score_spread":0.21369358989818932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389039198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9740678,0.022575496,0.0013735545,0.00031641114,0.00080595963,0.0001959531,0.000023834848,0.00017151622,0.0004694882],"genre_scores_gemma":[0.9970758,0.0010482491,0.000085420346,0.00017467536,0.000023348362,0.000011964164,0.000063750886,0.00004129305,0.0014755315],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982119,0.00016928189,0.0004091645,0.00032683378,0.00010582669,0.0007769733],"domain_scores_gemma":[0.99938375,0.00010419308,0.00014870553,0.00024740482,0.000087336615,0.000028590839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000558964,0.0002769172,0.00033430284,0.00021460015,0.0008127616,0.00012829335,0.00028967703,0.00019758331,0.00013944332],"category_scores_gemma":[0.000040994793,0.00020834917,0.000085141925,0.00036400158,0.00025100537,0.00024037837,0.00012315593,0.0004015096,0.00011874938],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023193106,0.0009837041,0.034738347,0.00021909851,0.0023567951,0.005588821,0.02378479,0.001131846,0.7429198,0.002015336,0.0142291775,0.16971298],"study_design_scores_gemma":[0.037556928,0.0046901014,0.36626002,0.0012594877,0.0011781892,0.15787268,0.025509462,0.0021593312,0.08822877,0.00720871,0.30247018,0.005606139],"about_ca_topic_score_codex":0.000042576507,"about_ca_topic_score_gemma":0.000001956633,"teacher_disagreement_score":0.65469104,"about_ca_system_score_codex":0.00004945733,"about_ca_system_score_gemma":0.00016949013,"threshold_uncertainty_score":0.84962326},"labels":[],"label_agreement":null},{"id":"W4389232076","doi":"10.14785/lymphosign-2023-0012","title":"The impact of COVID-19 infection in pediatric and adult patients with primary immunodeficiency: a single center analysis","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"McMaster Children's Hospital; Hospital for Sick Children; McMaster University; University of Toronto","funders":"","keywords":"Medicine; Primary immunodeficiency; Asymptomatic; Pediatrics; Pandemic; Serology; Immunodeficiency; Immune dysregulation; Immunology; Respiratory distress; Disease; Herd immunity; Internal medicine; Coronavirus disease 2019 (COVID-19); Immune system; Infectious disease (medical specialty); Antibody; Vaccination; Surgery","score_opus":0.006425616394681375,"score_gpt":0.23126704815156288,"score_spread":0.2248414317568815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389232076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99298656,0.0061764806,0.00029966695,0.000060388345,0.00015213623,0.00013588542,0.00001515462,0.000025602509,0.0001481379],"genre_scores_gemma":[0.9977152,0.002093139,0.0000034888849,0.000045685312,0.0000028283587,0.0000065031963,0.00007392065,0.000010483013,0.000048788694],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869806,0.00021526804,0.000424215,0.00017472114,0.000081301696,0.0004064246],"domain_scores_gemma":[0.99919003,0.00017247566,0.00031610462,0.00018306142,0.00012235758,0.00001597816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005413428,0.00016215068,0.00027719524,0.0006029335,0.00050853344,0.000045764024,0.00018015155,0.00010387524,0.00003630375],"category_scores_gemma":[0.00014390137,0.00009640547,0.00018803607,0.0016960512,0.00019794749,0.00014860928,0.000057826925,0.00022602103,0.000014469359],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044151614,0.00037724272,0.9901114,0.000013737371,0.00033318077,0.0000029908344,0.001174865,0.001192311,0.0023909304,0.000019163032,0.00016445635,0.003778176],"study_design_scores_gemma":[0.0035089378,0.00045888373,0.99507797,0.00001114273,0.00013985515,0.00005291002,0.00023469678,0.00004956295,0.00006853702,0.00010652156,0.00015810884,0.00013289717],"about_ca_topic_score_codex":0.0009965189,"about_ca_topic_score_gemma":0.000028237533,"teacher_disagreement_score":0.0049665156,"about_ca_system_score_codex":0.00020525295,"about_ca_system_score_gemma":0.00028472807,"threshold_uncertainty_score":0.3931301},"labels":[],"label_agreement":null},{"id":"W4389948643","doi":"10.14785/lymphosign-2023-0014","title":"Corrigendum: A novel variant in <i>RUNX1</i> in a patient with refractory eosinophilic gastrointestinal disease and long-term clinical response to ketotifen","year":2023,"lang":"en","type":"erratum","venue":"LymphoSign Journal","topic":"Eosinophilic Esophagitis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Ketotifen; Medicine; Eosinophilic; Refractory (planetary science); Disease; Term (time); Gastroenterology; Dermatology; Internal medicine; Pathology; Biology; Asthma; Physics","score_opus":0.035500583100519394,"score_gpt":0.30289229899943343,"score_spread":0.26739171589891403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389948643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9716385,0.005578057,0.00069331686,0.0053985785,0.012892016,0.0028939804,0.00033193937,0.00018064557,0.00039298373],"genre_scores_gemma":[0.8955186,0.005991345,0.010866614,0.015020861,0.014883069,0.0007824692,0.0008668114,0.0020338164,0.054036424],"study_design_codex":"case_report","study_design_gemma":"observational","domain_scores_codex":[0.9930124,0.0007056836,0.0021989094,0.0013537656,0.0014123066,0.0013168992],"domain_scores_gemma":[0.99479914,0.00065064593,0.000854315,0.0009501168,0.00034028656,0.0024055277],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.002457629,0.0009337632,0.0017278156,0.0016936916,0.0001482051,0.00018845266,0.00046032178,0.0004988114,0.00007212815],"category_scores_gemma":[0.0026500865,0.00079685566,0.00029085524,0.0010897813,0.000349469,0.00020374412,0.00031814384,0.0035973769,0.0000662436],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.05119873,0.003007081,0.3151093,0.0004632035,0.00024336681,0.38689193,0.0010811002,0.00001897604,0.0006365148,0.000009039938,0.23651697,0.0048237685],"study_design_scores_gemma":[0.010014035,0.0072308015,0.8854958,0.016493615,0.00033704247,0.076214366,0.000091337075,0.00014398702,0.0000033908116,0.000044698718,0.0031593905,0.0007715867],"about_ca_topic_score_codex":0.00013025863,"about_ca_topic_score_gemma":0.00032877846,"teacher_disagreement_score":0.5703864,"about_ca_system_score_codex":0.0016280105,"about_ca_system_score_gemma":0.006035462,"threshold_uncertainty_score":0.9995994},"labels":[],"label_agreement":null},{"id":"W4390695074","doi":"10.14785/lymphosign-2023-0011","title":"Neurodevelopmental outcomes in two cases of artemis deficiency","year":2023,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster Children's Hospital; McMaster University Medical Centre","funders":"","keywords":"Severe combined immunodeficiency; Medicine; Pediatrics; Autism spectrum disorder; Psychosocial; Hematopoietic stem cell transplantation; Neurodevelopmental disorder; Dysfunctional family; Newborn screening; Transplantation; Autism; Psychiatry; Internal medicine","score_opus":0.016539067148019258,"score_gpt":0.2682911548686644,"score_spread":0.2517520877206451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390695074","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926961,0.0050876033,0.00006886771,0.00012894944,0.0009941054,0.00008298495,0.000008500469,0.00004427866,0.00088857487],"genre_scores_gemma":[0.99900824,0.0002307829,0.000022188302,0.000092750255,0.0000020564325,0.0000056223553,0.000013491287,0.000012964024,0.0006119075],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99860024,0.00011678584,0.0005947241,0.00016598398,0.00006729612,0.00045493932],"domain_scores_gemma":[0.99943477,0.00017727699,0.00019201453,0.00015067594,0.00003721341,0.000008030159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005220394,0.00015540059,0.00030052735,0.00035734902,0.0002128346,0.000015273376,0.0003089887,0.0000653999,0.00027564337],"category_scores_gemma":[0.00015414109,0.00013041424,0.0001235045,0.0005005054,0.00015477033,0.00011654998,0.00006902154,0.00022903351,0.00031861867],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020173022,0.000734726,0.2952296,0.000032382934,0.00012204025,0.00037511,0.0052480428,0.00047938977,0.63654697,0.0009765748,0.0017875154,0.058265872],"study_design_scores_gemma":[0.008300975,0.00033135866,0.92453235,0.00015876321,0.000038558963,0.0038955146,0.0065705627,0.000049239767,0.048475817,0.0013180168,0.0057300483,0.00059877994],"about_ca_topic_score_codex":0.00013120355,"about_ca_topic_score_gemma":0.0000045875618,"teacher_disagreement_score":0.62930274,"about_ca_system_score_codex":0.00005005716,"about_ca_system_score_gemma":0.00016481848,"threshold_uncertainty_score":0.53181386},"labels":[],"label_agreement":null},{"id":"W4392015219","doi":"10.14785/lymphosign-2023-0013","title":"Defective antibody production in double-strand DNA breakage syndromes: insights and implications","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Breakage; Nijmegen breakage syndrome; DNA; Double strand; Production (economics); Computational biology; Genetics; Biology; DNA damage; Computer science; Economics","score_opus":0.0176706849285736,"score_gpt":0.25371851694946196,"score_spread":0.23604783202088836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392015219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913219,0.0070796385,0.000024719167,0.0009251054,0.00014455567,0.00012650047,0.000022844391,0.000027529024,0.00032716885],"genre_scores_gemma":[0.9968263,0.002813971,0.000018685034,0.00003533175,0.00021379754,0.0000072634152,0.00002290604,9.280405e-7,0.000060839466],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99934405,0.000032048007,0.00015005066,0.00020404875,0.00010339819,0.00016641665],"domain_scores_gemma":[0.99975854,0.00005286645,0.00003018285,0.000027881815,0.000028417444,0.00010210786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011549686,0.00009240276,0.00010018644,0.0000336619,0.00016644929,0.0001766851,0.00007470311,0.000050815343,0.000024121235],"category_scores_gemma":[0.000006657941,0.000036716825,0.000045458226,0.00031713708,0.000035299763,0.00017768513,0.0000123551135,0.0000925339,0.000009534669],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116261086,0.00011879474,0.01478635,0.000038779177,0.000053867978,0.00017847946,0.00047031205,0.000015951862,0.924379,0.00077951606,0.0010221801,0.05804049],"study_design_scores_gemma":[0.00046094885,0.00018137081,0.96231174,0.0003802946,0.000054489017,0.0025911632,0.00036787183,0.00006781283,0.008545519,0.01373764,0.010993858,0.00030725886],"about_ca_topic_score_codex":0.0000206178,"about_ca_topic_score_gemma":0.00017640567,"teacher_disagreement_score":0.94752544,"about_ca_system_score_codex":0.000043321306,"about_ca_system_score_gemma":0.000027904434,"threshold_uncertainty_score":0.17037785},"labels":[],"label_agreement":null},{"id":"W4392683589","doi":"10.14785/lymphosign-2024-0001","title":"Rare <i>FLG</i> mutation associated with severe atopy","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Dermatology and Skin Diseases","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Atopy; Mutation; Medicine; Genetics; Biology; Immunology; Immunopathology; Gene","score_opus":0.009414374389642549,"score_gpt":0.24847769120339686,"score_spread":0.2390633168137543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392683589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775622,0.0068582967,0.0017459181,0.002376167,0.00060784735,0.00017334877,0.000014957234,0.00022571826,0.010435542],"genre_scores_gemma":[0.9975023,0.00006654575,0.00017668384,0.0011880843,0.00015156213,0.000005529612,0.000033264118,0.00002292977,0.0008530916],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.99918294,0.000054614105,0.00017632906,0.00013351429,0.00024559238,0.0002070204],"domain_scores_gemma":[0.99947816,0.000101805716,0.000054373315,0.00008746077,0.000096515505,0.00018169734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013037582,0.00011476574,0.00017924258,0.00009952804,0.00013146608,0.0000840361,0.000055192013,0.00009075973,0.00038807542],"category_scores_gemma":[0.0000854688,0.00007975146,0.00009431142,0.00021220323,0.000052325628,0.0001696006,0.000007695304,0.00020631668,0.00009692446],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010550669,0.00039569743,0.26487198,0.00022840982,0.0013984607,0.04985064,0.0015058398,0.00005851106,0.0009337357,0.0007789956,0.66104126,0.017881382],"study_design_scores_gemma":[0.018775394,0.0015017497,0.392871,0.008744871,0.003131015,0.50023997,0.001549981,0.004727257,0.004100085,0.031224297,0.031819224,0.0013151544],"about_ca_topic_score_codex":0.0000013682363,"about_ca_topic_score_gemma":0.0000013564498,"teacher_disagreement_score":0.62922204,"about_ca_system_score_codex":0.00012162126,"about_ca_system_score_gemma":0.00037704725,"threshold_uncertainty_score":0.42491537},"labels":[],"label_agreement":null},{"id":"W4394950328","doi":"10.14785/lymphosign-2024-0002","title":"Dual novel variants in CD40 leading to hyper IgM syndrome: a case report of a school-aged female with new-onset recurrent pneumonia","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Pneumonia; Medicine; Pediatrics; Atypical pneumonia; Immunology; Internal medicine","score_opus":0.019796551048516714,"score_gpt":0.26164420588952725,"score_spread":0.24184765484101053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394950328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9780213,0.01659561,0.003015882,0.00037501098,0.0014698277,0.0002454355,0.000025441788,0.000046047335,0.00020539302],"genre_scores_gemma":[0.9978812,0.000059217215,0.00030350644,0.00009432823,0.000011486096,0.000013925645,0.000017674296,0.000036375484,0.0015823406],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.99796003,0.00011930134,0.0008035254,0.0004092398,0.00010664334,0.0006012511],"domain_scores_gemma":[0.99923944,0.00011568713,0.0002057912,0.00032263465,0.000066076354,0.00005038466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009339031,0.00028512377,0.00048544892,0.00051803683,0.0002580855,0.000090748705,0.00023617804,0.00019286228,0.00035591304],"category_scores_gemma":[0.00018248566,0.00023169667,0.0001403467,0.0006838677,0.00011570186,0.00025453034,0.000078745325,0.00070154516,0.00019600356],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013475971,0.0009989396,0.010169693,0.00013693796,0.00077571213,0.095484525,0.011109297,0.0005521405,0.8628081,0.00020361932,0.002945957,0.013467497],"study_design_scores_gemma":[0.0026858342,0.00079624826,0.0308213,0.0012638596,0.000103256156,0.95448244,0.0019077368,0.000027232147,0.0045160744,0.00008503343,0.002892901,0.00041806512],"about_ca_topic_score_codex":0.0005191246,"about_ca_topic_score_gemma":0.000045359033,"teacher_disagreement_score":0.85899794,"about_ca_system_score_codex":0.00018368392,"about_ca_system_score_gemma":0.00094207487,"threshold_uncertainty_score":0.9448316},"labels":[],"label_agreement":null},{"id":"W4399036975","doi":"10.14785/lymphosign-2024-0004","title":"Autoimmune manifestations following COVID-19 infection in two individuals with primary immunodeficiency","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Coronavirus disease 2019 (COVID-19); Primary immunodeficiency; Virology; Human immunodeficiency virus (HIV); Medicine; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Immunology; Immunodeficiency; Immune system; Infectious disease (medical specialty); Internal medicine; Disease; Outbreak","score_opus":0.011389573398145546,"score_gpt":0.27881645834340646,"score_spread":0.2674268849452609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399036975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85634774,0.11889651,0.017065156,0.0006720269,0.0027332488,0.00036395976,0.00001566458,0.00030576257,0.0035999627],"genre_scores_gemma":[0.9974972,0.0007821042,0.00015795145,0.00054430176,0.000011049552,0.00004508532,0.000104881154,0.000044767905,0.0008126408],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99769455,0.0003302834,0.00071524037,0.00040152032,0.00014792479,0.0007104725],"domain_scores_gemma":[0.99920535,0.0002656431,0.00017475632,0.0002849567,0.000042966105,0.000026318141],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0014203414,0.00032897232,0.00037316125,0.0007834684,0.0009073391,0.0002605232,0.00035568708,0.00016072864,0.0004565615],"category_scores_gemma":[0.00011173472,0.00027181284,0.00024523752,0.00095703197,0.00020763518,0.00067507755,0.000074014504,0.000824937,0.0003178624],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089066825,0.0027703873,0.16047868,0.0006260766,0.0029188448,0.0039373385,0.051335815,0.0150552485,0.5718009,0.022375848,0.0039750994,0.16383512],"study_design_scores_gemma":[0.032366667,0.0018708619,0.498085,0.0030930617,0.0010079824,0.048656803,0.007674846,0.00068049016,0.00606553,0.015770385,0.38096341,0.0037649642],"about_ca_topic_score_codex":0.0010527433,"about_ca_topic_score_gemma":0.000022554315,"teacher_disagreement_score":0.56573534,"about_ca_system_score_codex":0.0006180717,"about_ca_system_score_gemma":0.0013804451,"threshold_uncertainty_score":0.9999734},"labels":[],"label_agreement":null},{"id":"W4399478061","doi":"10.14785/lymphosign-2024-0005","title":"Characterization of thymic architecture and lymphocyte populations in X-MAID due to an underlying pathogenic moesin mutation","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Moesin; Radixin; Immunodeficiency; Ezrin; Biology; Histopathology; Cortical dysplasia; Pathology; Immunological synapse; Cytoarchitecture; Immunology; T cell; Immune system; Medicine; T-cell receptor; Cell; Genetics; Cytoskeleton; Epilepsy; Neuroscience","score_opus":0.024395097782425185,"score_gpt":0.27363800430078167,"score_spread":0.24924290651835648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399478061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.957435,0.012877549,0.028659102,0.0001815283,0.000610723,0.00015562684,0.0000173595,0.000031503387,0.00003160593],"genre_scores_gemma":[0.999391,0.00014402748,0.00016774939,0.000089364476,0.000007088313,0.000008143648,0.000106205756,0.000017635053,0.000068745205],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989744,0.00017066752,0.00038685623,0.00019174351,0.0000437307,0.00023262596],"domain_scores_gemma":[0.9997177,0.000030332765,0.000091816415,0.00011290108,0.000034163066,0.000013090058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032581826,0.0001331755,0.00019146672,0.0004105198,0.00018456552,0.00006226362,0.000117255775,0.0001248326,0.00006415404],"category_scores_gemma":[0.000027025793,0.000120904915,0.000055154385,0.0003412472,0.00005663367,0.0002504932,0.000022841905,0.00017885095,0.000019330213],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000068756584,0.00004475085,0.0001401453,0.000019231764,0.000021793729,0.000022221426,0.004289946,0.00039601253,0.84232163,0.0008950128,0.0000015407786,0.15177897],"study_design_scores_gemma":[0.0090186745,0.0018957559,0.6937545,0.0025572302,0.00031661335,0.019921165,0.008514615,0.0055775633,0.22793685,0.022546941,0.006179401,0.0017806956],"about_ca_topic_score_codex":0.00007885474,"about_ca_topic_score_gemma":0.0000139314425,"teacher_disagreement_score":0.69361436,"about_ca_system_score_codex":0.00008940069,"about_ca_system_score_gemma":0.00015057938,"threshold_uncertainty_score":0.49303594},"labels":[],"label_agreement":null},{"id":"W4401735396","doi":"10.14785/lymphosign-2024-0006","title":"Novel variant in <i>IGHM</i> gene in a patient with agammaglobulinemia: A case report of a preschool child presenting with recurrent pneumonia","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"X-linked agammaglobulinemia; Primary immunodeficiency; Immunodeficiency; Pneumonia; Context (archaeology); Immunology; Common variable immunodeficiency; Medicine; Antibody; Biology; Pediatrics; Immune system; Bruton's tyrosine kinase; Internal medicine","score_opus":0.005851952646769164,"score_gpt":0.2086572987166741,"score_spread":0.20280534606990494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401735396","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96096486,0.034979764,0.0021837256,0.0002225998,0.0005021028,0.00038928082,0.000017679526,0.000031544914,0.00070846704],"genre_scores_gemma":[0.99923563,0.00016497441,0.00038997282,0.000040089184,0.000009631483,0.000037552098,0.00001882322,0.000029884439,0.00007342494],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.99794215,0.000128854,0.0008932917,0.00039098124,0.000112544505,0.00053219637],"domain_scores_gemma":[0.9992072,0.00007418368,0.00033248193,0.000281471,0.00008606569,0.000018627954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058022153,0.000270198,0.00040508743,0.00036123212,0.00015509545,0.000057475907,0.00019828917,0.00016064076,0.00004685678],"category_scores_gemma":[0.000058228154,0.00018986312,0.00009474492,0.0006015324,0.0001390895,0.00020979778,0.0000700531,0.00082375965,0.000007646876],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002759122,0.003100932,0.0039042535,0.0003277848,0.0007998146,0.6203727,0.0140524795,0.004896734,0.32105684,0.0003565659,0.00024836356,0.02812439],"study_design_scores_gemma":[0.0038168544,0.00069524633,0.0023945635,0.001535476,0.00008148312,0.9762386,0.0011070493,0.0004094984,0.010941946,0.000045484703,0.00238259,0.00035119068],"about_ca_topic_score_codex":0.00062866305,"about_ca_topic_score_gemma":0.000083389255,"teacher_disagreement_score":0.3558659,"about_ca_system_score_codex":0.00012783168,"about_ca_system_score_gemma":0.00046940698,"threshold_uncertainty_score":0.7742393},"labels":[],"label_agreement":null},{"id":"W4402432829","doi":"10.14785/lymphosign-2024-0008","title":"The outcome of haematopoietic stem cell transplantation in a patient with STAT1 gain-of-function: a case report","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Chronic Myeloid Leukemia Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Stem cell; Haematopoiesis; Transplantation; Gain of function; Function (biology); Outcome (game theory); Oncology; Medicine; Biology; Internal medicine; Cell biology; Genetics; Mathematics; Gene; Mutation","score_opus":0.016437007485745676,"score_gpt":0.26236479826766823,"score_spread":0.24592779078192256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402432829","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991687,0.0025022763,0.0044899653,0.0001679567,0.0002730235,0.00032494625,0.0000070768697,0.000014917259,0.00053282554],"genre_scores_gemma":[0.9990027,0.00017303001,0.00044667156,0.00002625852,0.000036750178,0.00001671589,0.0000045566767,0.000020956066,0.00027238854],"study_design_codex":"case_report","study_design_gemma":"case_report","domain_scores_codex":[0.9984846,0.000060379494,0.00073129206,0.00015017517,0.000391137,0.00018240245],"domain_scores_gemma":[0.99920213,0.00016686741,0.00024534555,0.00020740408,0.000088132176,0.0000901345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038008072,0.00012975975,0.0002652205,0.00012939991,0.000063327105,0.000023723353,0.000042932068,0.00004631079,0.000037351117],"category_scores_gemma":[0.00000781174,0.00007308467,0.00009816707,0.0002462779,0.000055687782,0.000070991286,0.0000064301453,0.00017889877,0.0000038750745],"study_design_candidate":"case_report","study_design_consensus":"case_report","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023652273,0.0003735742,0.03715079,0.0015429232,0.00045550862,0.914205,0.013397623,0.00043393148,0.0015086252,0.00022018791,0.00034109736,0.028005486],"study_design_scores_gemma":[0.005049588,0.0017228895,0.0021089283,0.001368069,0.0006069881,0.9748957,0.002436354,0.00087954954,0.010211825,0.00015383172,0.00044271426,0.00012354447],"about_ca_topic_score_codex":0.00011651223,"about_ca_topic_score_gemma":0.000044686025,"teacher_disagreement_score":0.06069069,"about_ca_system_score_codex":0.00077175384,"about_ca_system_score_gemma":0.0010033573,"threshold_uncertainty_score":0.29803064},"labels":[],"label_agreement":null},{"id":"W4402433272","doi":"10.14785/lymphosign-2024-0007","title":"Impact of the COVID-19 pandemic on patients with primary immunodeficiency","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Pandemic; Coronavirus disease 2019 (COVID-19); Virology; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Primary immunodeficiency; Human immunodeficiency virus (HIV); Medicine; Immunology; Internal medicine; Infectious disease (medical specialty); Outbreak","score_opus":0.012342079674220007,"score_gpt":0.2541938371397736,"score_spread":0.2418517574655536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402433272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9670924,0.029367512,0.00061008084,0.000117476746,0.0011862564,0.00020906128,0.000041075076,0.00006143626,0.0013147051],"genre_scores_gemma":[0.99893385,0.00018318286,0.0000052048094,0.00040856222,0.0000054434936,0.000005573649,0.000022736092,0.000023829174,0.00041164298],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985945,0.00021248788,0.00040654984,0.00022834368,0.00013199441,0.00042607615],"domain_scores_gemma":[0.99916464,0.00018815955,0.00020153068,0.00035109857,0.00007707625,0.000017481616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045204596,0.00023719562,0.00026582778,0.00017059802,0.00052432634,0.00005383719,0.00055807864,0.00014959533,0.00047330192],"category_scores_gemma":[0.00008989598,0.000119949844,0.00035697813,0.00040987603,0.0003814926,0.00014499477,0.00006529138,0.0005410616,0.00010273424],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003786546,0.0027234294,0.6166233,0.00021828472,0.0022356817,0.000037743408,0.008868585,0.0033097693,0.23173168,0.0024662425,0.0109013105,0.11709741],"study_design_scores_gemma":[0.008770024,0.0031562522,0.94210035,0.0005936819,0.00024574294,0.0022324177,0.0003777986,0.000023987017,0.0014543103,0.0012891795,0.039010193,0.0007460819],"about_ca_topic_score_codex":0.000106239146,"about_ca_topic_score_gemma":5.550786e-7,"teacher_disagreement_score":0.325477,"about_ca_system_score_codex":0.00046928943,"about_ca_system_score_gemma":0.0011416343,"threshold_uncertainty_score":0.5182324},"labels":[],"label_agreement":null},{"id":"W4406018943","doi":"10.14785/lymphosign-2024-0012","title":"Abstracts of the Immunodeficiency Canada 11<sup>th</sup> PID Symposium, 7 November 2024, Banff","year":2024,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Human immunodeficiency virus (HIV); Virology; Medicine","score_opus":0.0069138514667140905,"score_gpt":0.21905038686456982,"score_spread":0.21213653539785574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406018943","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9696839,0.0041345325,0.00016775633,0.006863756,0.00322402,0.00037120024,0.0000469848,0.00006066351,0.0154471975],"genre_scores_gemma":[0.9939352,0.00024635709,0.00006169679,0.0006353245,0.00028069736,0.000010143136,0.0000029060457,0.000042213396,0.004785446],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99774945,0.000059223927,0.0006643523,0.00028137577,0.0008147387,0.0004308654],"domain_scores_gemma":[0.99890316,0.000120717064,0.00017961474,0.00040520154,0.00013580137,0.00025550654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002906542,0.00027300755,0.0003550558,0.000138034,0.00025190428,0.000104498875,0.0002328772,0.00009912637,0.00062560814],"category_scores_gemma":[0.000055994293,0.00016983738,0.00030314506,0.00044523456,0.00008410179,0.00011703698,0.000054375716,0.00042127652,0.000048749465],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008640778,0.0022021676,0.0385287,0.0011135978,0.003064039,0.009607641,0.0038528147,0.016338743,0.7074916,0.001825905,0.1708984,0.044212352],"study_design_scores_gemma":[0.011279397,0.0016602651,0.20999236,0.0047229747,0.0023354862,0.10351674,0.0016528902,0.016693074,0.16835533,0.0007750994,0.47752538,0.0014909967],"about_ca_topic_score_codex":0.032300327,"about_ca_topic_score_gemma":0.007287404,"teacher_disagreement_score":0.53913623,"about_ca_system_score_codex":0.0010336466,"about_ca_system_score_gemma":0.0024644374,"threshold_uncertainty_score":0.9741437},"labels":[],"label_agreement":null},{"id":"W4406202976","doi":"10.14785/lymphosign-2024-0010","title":"Novel gain-of-function mutation in STAT1 protein with ALPS-like presentation","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Chronic mucocutaneous candidiasis; Primary immunodeficiency; Immunology; Medicine; Immunodeficiency; Autoimmunity; Mutation; Disease; Biology; Immune system; Genetics; Gene; Pathology","score_opus":0.006832418165041795,"score_gpt":0.22673291887674465,"score_spread":0.21990050071170286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406202976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.80854815,0.0077828895,0.18061872,0.00021556765,0.000825487,0.00044808906,0.0000048964002,0.000027611784,0.0015286048],"genre_scores_gemma":[0.9982683,0.00002392278,0.00022307587,0.000097905104,0.000002974824,0.000025596592,0.000032646945,0.000008489917,0.0013170643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905455,0.00011229955,0.00039041587,0.00014925552,0.000054998494,0.00023846813],"domain_scores_gemma":[0.9994903,0.0000507402,0.00022382094,0.000121748904,0.00010907706,0.000004303266],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034297272,0.00012340402,0.00017842079,0.00029605886,0.00017230299,0.000022012202,0.00013797585,0.00011399709,0.00008817492],"category_scores_gemma":[0.000038266146,0.000102437676,0.000051456478,0.00037307505,0.0001151452,0.00020858139,0.00001776719,0.00022810325,0.00001561244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013297194,0.00040627635,0.001338543,0.000036444406,0.00014031242,0.000005866079,0.0017027503,0.0015338558,0.9584291,0.0022978848,0.0001662672,0.032612976],"study_design_scores_gemma":[0.04001666,0.002680365,0.16674115,0.0019958564,0.00029923918,0.0010226908,0.016029816,0.000987265,0.74170196,0.01011025,0.017404035,0.0010107221],"about_ca_topic_score_codex":0.00021808204,"about_ca_topic_score_gemma":0.000012050219,"teacher_disagreement_score":0.21672715,"about_ca_system_score_codex":0.00010909559,"about_ca_system_score_gemma":0.00037441155,"threshold_uncertainty_score":0.41772872},"labels":[],"label_agreement":null},{"id":"W4409360271","doi":"10.14785/lymphosign-2025-0002","title":"A potential novel genetic etiology of autoimmune encephalopathy","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"interferon and immune responses","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Etiology; Encephalopathy; Medicine; Immunology; Neuroscience; Biology; Pathology; Internal medicine","score_opus":0.005445090051557517,"score_gpt":0.22951958484497922,"score_spread":0.2240744947934217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409360271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88575816,0.021678573,0.08499685,0.000476067,0.004718361,0.000156102,0.000013586261,0.000043428943,0.0021588705],"genre_scores_gemma":[0.99500865,0.0005413961,0.0006316805,0.00027892675,0.00003255323,0.0000056617514,0.0000057931584,0.000010262836,0.0034850703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864817,0.00022605198,0.0005651427,0.00016735985,0.000035169647,0.00035812284],"domain_scores_gemma":[0.999271,0.000121189696,0.00021931398,0.00022255065,0.00014875438,0.00001720781],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002980416,0.00016259072,0.00034875926,0.00030313875,0.00020052797,0.000017397673,0.0003942031,0.00023815998,0.0012883773],"category_scores_gemma":[0.00013438678,0.00013703988,0.00019885224,0.00016219752,0.00030303156,0.000054556924,0.000096052965,0.0002839689,0.0001174326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008221384,0.00017754422,0.0006439298,0.0000129441305,0.00025165427,0.000014558258,0.00023228215,0.000025065397,0.97961044,0.0012759296,0.0025732839,0.014360204],"study_design_scores_gemma":[0.008459344,0.0011567038,0.14074752,0.0003708643,0.00020804934,0.0074961577,0.000695107,0.00006224428,0.8029031,0.0013837686,0.03613418,0.0003829254],"about_ca_topic_score_codex":0.00004238278,"about_ca_topic_score_gemma":0.0000016657816,"teacher_disagreement_score":0.17670733,"about_ca_system_score_codex":0.0000669367,"about_ca_system_score_gemma":0.00046943134,"threshold_uncertainty_score":0.9996246},"labels":[],"label_agreement":null},{"id":"W4409360412","doi":"10.14785/lymphosign-2025-0001","title":"2025 Canadian resource guides for individuals and families affected by primary immunodeficiency","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Primary immunodeficiency; Resource (disambiguation); Immunodeficiency; Primary (astronomy); Psychology; Medicine; Computer science; Immunology; Physics","score_opus":0.006174245092877427,"score_gpt":0.24604011121968372,"score_spread":0.2398658661268063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409360412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9339105,0.023939475,0.0036933413,0.008708792,0.0006963005,0.0014182566,0.00018974608,0.00012981835,0.027313799],"genre_scores_gemma":[0.98791105,0.00092321326,0.001375174,0.0043876073,0.000078608995,0.00006526798,0.000053189982,0.000028372406,0.005177524],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987945,0.000050219063,0.00033140782,0.00023603189,0.00019106378,0.00039675273],"domain_scores_gemma":[0.9992044,0.00012460719,0.00009479573,0.00017773823,0.00009469197,0.0003037457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031880292,0.00019378247,0.00032157818,0.00043137424,0.0004989942,0.00011536209,0.000101501246,0.000114151524,0.000031172178],"category_scores_gemma":[0.000150874,0.00016132947,0.00010650214,0.00026934018,0.00007576304,0.0000705737,0.000026001055,0.0001530812,0.000005994306],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000618038,0.000732745,0.069316804,0.00036524475,0.0014474655,0.0002505181,0.0011260009,0.000013945648,0.2322951,0.0009552164,0.37217674,0.32070217],"study_design_scores_gemma":[0.012165071,0.001226026,0.24681121,0.00069946714,0.0006675165,0.0027524182,0.0007472037,0.00021324118,0.014114996,0.0009841141,0.7191633,0.00045545166],"about_ca_topic_score_codex":0.0021055548,"about_ca_topic_score_gemma":0.00034860257,"teacher_disagreement_score":0.34698653,"about_ca_system_score_codex":0.0006300777,"about_ca_system_score_gemma":0.00077457854,"threshold_uncertainty_score":0.6578825},"labels":[],"label_agreement":null},{"id":"W4411330989","doi":"10.14785/lymphosign-2025-0004","title":"Transition from subcutaneous to intravenous immunoglobulin therapy in primary immunodeficiency: A case series highlighting patient-centered treatment optimization","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Primary immunodeficiency; Medicine; Common variable immunodeficiency; Antibody; Series (stratigraphy); Human immunodeficiency virus (HIV); Immunology; Biology","score_opus":0.006513358850714579,"score_gpt":0.2057521159646384,"score_spread":0.19923875711392383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411330989","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93435216,0.050611153,0.0117615815,0.00059530075,0.0015435324,0.0005559272,0.000051694715,0.0000759871,0.00045264995],"genre_scores_gemma":[0.99590266,0.0024896627,0.00060834904,0.00059930625,0.000007918483,0.000046906945,0.00017642695,0.000026560689,0.00014220773],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976592,0.0003374248,0.00085773255,0.00040277615,0.00007256257,0.0006703211],"domain_scores_gemma":[0.9992416,0.00009715066,0.00021594114,0.00032313392,0.00010449794,0.000017710976],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023984203,0.00037318064,0.0004961022,0.00041134894,0.00073548337,0.00012213162,0.00027758512,0.0002473106,0.00024765774],"category_scores_gemma":[0.000025171235,0.00032817043,0.000181411,0.0005096421,0.000106459585,0.0002627031,0.000041500498,0.00027595507,0.00004247235],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006432482,0.0023221788,0.00019062066,0.000012579324,0.0005419995,0.0025951392,0.030365512,0.032036643,0.4465574,0.0001167149,0.00008370142,0.478745],"study_design_scores_gemma":[0.10109293,0.034670047,0.00893037,0.003579898,0.0009772313,0.20121734,0.07098662,0.0037919506,0.5017677,0.0031670767,0.06316902,0.0066498285],"about_ca_topic_score_codex":0.001216749,"about_ca_topic_score_gemma":0.000018083576,"teacher_disagreement_score":0.4720952,"about_ca_system_score_codex":0.00078364206,"about_ca_system_score_gemma":0.00037413347,"threshold_uncertainty_score":0.99991703},"labels":[],"label_agreement":null},{"id":"W4411653051","doi":"10.14785/lpsn-2016-0001","title":"Review of hereditary angioedema","year":2016,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Coagulation, Bradykinin, Polyphosphates, and Angioedema","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Toronto","funders":"","keywords":"Hereditary angioedema; Dermatology; Angioedema; Medicine","score_opus":0.017241155752796257,"score_gpt":0.2735669396615144,"score_spread":0.25632578390871813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411653051","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09023526,0.863445,0.009689144,0.023902506,0.0022834928,0.00076445594,0.00003626754,0.00015667694,0.009487206],"genre_scores_gemma":[0.7941998,0.18271692,0.0038869167,0.011422752,0.0035380882,0.000014440794,0.000015271486,0.000097737524,0.004108017],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985209,0.000051202347,0.0006116553,0.0001627697,0.00037140193,0.00028203105],"domain_scores_gemma":[0.9987918,0.00011440069,0.00029684097,0.0002684593,0.0002540531,0.00027440581],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005220599,0.000160764,0.00045418396,0.0001082911,0.000077013574,0.000008801279,0.00013313926,0.00007510806,0.0016483797],"category_scores_gemma":[0.00022039635,0.00009554559,0.00034490612,0.0001904488,0.00009050067,0.00016997472,0.000026090938,0.00006854099,0.000073422016],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030717437,0.00030875774,0.053062156,0.0027792854,0.00038898794,0.00035625792,0.00020989441,3.9251123e-7,0.016838832,0.0011279522,0.56972885,0.35489148],"study_design_scores_gemma":[0.017842107,0.0026629989,0.18350662,0.19171503,0.0016125607,0.037886404,0.00019627975,0.000066669985,0.056056846,0.010120643,0.49705797,0.00127587],"about_ca_topic_score_codex":0.000011713525,"about_ca_topic_score_gemma":6.5549614e-7,"teacher_disagreement_score":0.7039646,"about_ca_system_score_codex":0.00009889941,"about_ca_system_score_gemma":0.00030332358,"threshold_uncertainty_score":0.99926424},"labels":[],"label_agreement":null},{"id":"W4411722797","doi":"10.14785/lymphosign-2025-0003","title":"Primary immunodeficiencies related to folate and cobalamin transport and metabolism","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Folate and B Vitamins Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Cobalamin; Primary (astronomy); Metabolism; Immunologic Deficiency Syndromes; Medicine; Chemistry; Immunology; Internal medicine; Vitamin B12; Immune system","score_opus":0.007160959710691116,"score_gpt":0.26695880177392056,"score_spread":0.2597978420632294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411722797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.973291,0.018334838,0.00048851536,0.0017051488,0.00014951175,0.00021727754,0.0000033891868,0.000025506019,0.0057848142],"genre_scores_gemma":[0.9904622,0.0032537633,0.00080956006,0.0009861655,0.000026833377,0.0000050386457,0.000003601762,0.000014154847,0.0044387127],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988197,0.000037484282,0.0003199535,0.00020636007,0.00028686403,0.00032965303],"domain_scores_gemma":[0.99943316,0.000046803834,0.000039113143,0.00014647983,0.00011532393,0.00021912013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058671186,0.0001420655,0.00032741204,0.00033463063,0.00022335626,0.00006308088,0.00009014688,0.00009897631,0.000043166256],"category_scores_gemma":[0.00004380785,0.00010820651,0.00006412227,0.00041976856,0.00010913662,0.00012643113,0.000046738412,0.00027375808,0.000008756323],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017892346,0.0004174822,0.111994825,0.00037139337,0.001006763,0.0012612538,0.0049821767,0.000008872349,0.61393344,0.0055529885,0.006430837,0.25225073],"study_design_scores_gemma":[0.0049366006,0.00043978993,0.96168417,0.00036431858,0.00027866912,0.0031883493,0.00042974672,0.00017682431,0.0041926727,0.0015032415,0.022591582,0.00021403999],"about_ca_topic_score_codex":0.000036337857,"about_ca_topic_score_gemma":0.0000018420633,"teacher_disagreement_score":0.84968936,"about_ca_system_score_codex":0.0000846425,"about_ca_system_score_gemma":0.0002933075,"threshold_uncertainty_score":0.4412533},"labels":[],"label_agreement":null},{"id":"W4414171960","doi":"10.14785/lymphosign-2025-0006","title":"A novel confirmed humoral immunodeficiency associated with <i>QARS1</i> mutation","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Exome sequencing; Immunodeficiency; Antibody; Sanger sequencing; Common variable immunodeficiency; Sibling; Sepsis; Enzyme replacement therapy; Humoral immunity","score_opus":0.007289734738470863,"score_gpt":0.2185082388539786,"score_spread":0.21121850411550774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414171960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88689,0.04171675,0.05068847,0.00075955584,0.0027923828,0.00046385347,0.000030759868,0.0002324932,0.016425742],"genre_scores_gemma":[0.99601454,0.000058175436,0.000073975585,0.0007103695,0.0000040930245,0.000018353026,0.00007964726,0.000020836767,0.0030199883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982494,0.00015416431,0.0005519034,0.00028773092,0.000098609984,0.0006582033],"domain_scores_gemma":[0.99897176,0.00016269686,0.00034603293,0.00026204178,0.0002463788,0.0000110689525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006159754,0.0002858574,0.0003780531,0.00027901563,0.001003847,0.00011141891,0.00046123902,0.00024290019,0.00029896587],"category_scores_gemma":[0.00018568798,0.00022994577,0.00015767905,0.00063076336,0.00037826892,0.00023109937,0.000051428306,0.00051468733,0.00009730974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007472614,0.0013283571,0.001046826,0.00001693791,0.0008315816,0.000049943108,0.0024760005,0.0003255579,0.9600766,0.0068500396,0.0018521448,0.024398778],"study_design_scores_gemma":[0.1288864,0.005159814,0.1864718,0.0044553955,0.0021389928,0.015431333,0.031637263,0.0011002615,0.4705266,0.008664639,0.14008112,0.0054463614],"about_ca_topic_score_codex":0.00009753447,"about_ca_topic_score_gemma":0.0000051008014,"teacher_disagreement_score":0.48955,"about_ca_system_score_codex":0.00018502906,"about_ca_system_score_gemma":0.00058146333,"threshold_uncertainty_score":0.9376916},"labels":[],"label_agreement":null},{"id":"W4416374013","doi":"10.14785/lymphosign-2025-0007","title":"Phenotypic and genetic characterization of heterozygous <i>FOXN1</i> variants: a case series of mild immunodeficiency","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"FOXO transcription factor regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Ottawa; Children's Hospital of Eastern Ontario; McMaster University Medical Centre; McMaster University","funders":"","keywords":"Proband; Immunodeficiency; Otitis; Sanger sequencing; Severe combined immunodeficiency; Phenotype; Compound heterozygosity; Exome sequencing","score_opus":0.0063385302354478775,"score_gpt":0.21167883551348374,"score_spread":0.20534030527803587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416374013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9616522,0.0015473443,0.036395397,0.000049365623,0.00018860016,0.00009071314,0.000022102042,0.0000034657423,0.000050779403],"genre_scores_gemma":[0.99846524,0.0004947272,0.00085949077,0.000049949504,0.000029494886,0.0000025807694,0.000018847846,0.0000085783495,0.00007107881],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928665,0.000053716543,0.00033606766,0.00013071307,0.000083508174,0.0001093241],"domain_scores_gemma":[0.99951184,0.0000042319416,0.00017821096,0.00015007211,0.00012522405,0.000030437806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000086787535,0.000097304604,0.00013584689,0.00008364902,0.00007541048,0.000019657211,0.00007873253,0.000081669066,0.000010599668],"category_scores_gemma":[0.00001581789,0.00009377203,0.000054385633,0.000107157524,0.00009002242,0.000013073659,0.000023040946,0.00003926379,2.6937272e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014706068,0.00004709016,0.0023972793,0.000045227676,0.000045017823,0.000015884072,0.000111842,0.000034214652,0.99382776,0.00010390044,0.000020598065,0.003204142],"study_design_scores_gemma":[0.0017886123,0.00052018254,0.079230145,0.00012438397,0.00008920588,0.007271156,0.00010692844,0.0002502504,0.909129,0.00032961208,0.00096997333,0.00019050585],"about_ca_topic_score_codex":0.00001269954,"about_ca_topic_score_gemma":0.0000032505313,"teacher_disagreement_score":0.0846987,"about_ca_system_score_codex":0.000013077341,"about_ca_system_score_gemma":0.00008044561,"threshold_uncertainty_score":0.38239124},"labels":[],"label_agreement":null},{"id":"W4416374040","doi":"10.14785/lymphosign-2025-0008","title":"A novel missense variant in CTLA4 associated with immune dysregulation","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Ontario Clinical Oncology Group; McMaster University; Children's Hospital of Eastern Ontario; McMaster University Medical Centre","funders":"","keywords":"Immune dysregulation; Missense mutation; Sanger sequencing; Immune system; Haploinsufficiency; Proband; Cytotoxic T cell","score_opus":0.005788951722457424,"score_gpt":0.20642142880060024,"score_spread":0.20063247707814283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416374040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9211733,0.046181455,0.024873681,0.0011021033,0.0016383186,0.00036088718,0.0000105019435,0.000095791605,0.0045639686],"genre_scores_gemma":[0.9976368,0.000074505806,0.00007864248,0.00024134104,0.0000029853572,0.000008248384,0.000036398727,0.000013597161,0.0019075072],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986409,0.00015775542,0.00049394695,0.00020302412,0.000053383796,0.00045101158],"domain_scores_gemma":[0.9993291,0.00013548684,0.00022594766,0.00019959793,0.000102973965,0.0000069331945],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006702034,0.00019464803,0.0003110985,0.00031541885,0.00036512723,0.000050075832,0.00024659908,0.00022672415,0.0001741924],"category_scores_gemma":[0.0001569206,0.00015863002,0.000093770745,0.0005614545,0.00014484968,0.00014790532,0.000035657584,0.00039728117,0.000033844746],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011110198,0.0014223327,0.0014377994,0.000014944212,0.00065145775,0.0002395675,0.0020388798,0.0011056534,0.9578481,0.0048145647,0.000572565,0.028743114],"study_design_scores_gemma":[0.07161433,0.0012953969,0.7807894,0.0041574,0.00055931427,0.016325884,0.0062273345,0.0020071445,0.078162596,0.0077904887,0.028845524,0.0022252114],"about_ca_topic_score_codex":0.00016089008,"about_ca_topic_score_gemma":0.000012480889,"teacher_disagreement_score":0.8796855,"about_ca_system_score_codex":0.00019075065,"about_ca_system_score_gemma":0.00033427088,"threshold_uncertainty_score":0.6468744},"labels":[],"label_agreement":null},{"id":"W7148543930","doi":"10.14785/lymphosign-2025-0010","title":"Abstracts of the Immunodeficiency Canada 12 <sup>th</sup> PID Symposium, 16 <sup>th</sup> October 2025, Vancouver","year":2025,"lang":"en","type":"article","venue":"LymphoSign Journal","topic":"Immunodeficiency and Autoimmune Disorders","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Human immunodeficiency virus (HIV); Population; MEDLINE; Pandemic","score_opus":0.0047281218201943994,"score_gpt":0.19542798019547164,"score_spread":0.19069985837527725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7148543930","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8443713,0.083595105,0.0008794411,0.0020079436,0.008202278,0.0009079702,0.00013902668,0.0001135648,0.059783347],"genre_scores_gemma":[0.9802883,0.00078098464,0.00002381427,0.0015422457,0.000029952986,0.000022335771,0.000030506597,0.00004955973,0.017232284],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.995497,0.0005038732,0.0016791451,0.00059373537,0.0003363631,0.0013898996],"domain_scores_gemma":[0.99733907,0.00037828574,0.0007963775,0.0010934686,0.00035087462,0.00004190591],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010271359,0.00066411425,0.00085692684,0.00030533757,0.001641376,0.00010123058,0.0019392814,0.0005229866,0.0015339886],"category_scores_gemma":[0.0002358426,0.000497605,0.0005884752,0.00075318187,0.00066645327,0.00034803266,0.00035756844,0.0013067339,0.00010394956],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017543287,0.0030364916,0.011227492,0.0004061001,0.0033947777,0.00013488739,0.010348766,0.08933694,0.3433176,0.0045273653,0.48181632,0.050698925],"study_design_scores_gemma":[0.012303948,0.00046660332,0.019725781,0.001471586,0.00081021077,0.0012093103,0.014975226,0.00075846893,0.10288052,0.0022364715,0.8412165,0.0019453902],"about_ca_topic_score_codex":0.074268386,"about_ca_topic_score_gemma":0.0066792695,"teacher_disagreement_score":0.35940015,"about_ca_system_score_codex":0.0008039073,"about_ca_system_score_gemma":0.0038088418,"threshold_uncertainty_score":0.9997476},"labels":[],"label_agreement":null}]}