{"meta":{"query_hash":"37d24656ac52","filters":{"venue":"Microbiology Research"},"cohort_total":19,"direct_labels_cover":0,"predictions_cover":19,"exported":19,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/37d24656ac52","api":"https://metacan.xera.ac/api/v1/cohort?venue=Microbiology+Research"},"results":[{"id":"W3135261731","doi":"10.3390/microbiolres12010013","title":"Looking for Solutions to the Pitfalls of Developing Novel Antibacterials in an Economically Challenging System","year":2021,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Antibiotic Use and Resistance","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Provincial Laboratory of Public Health; University of Alberta Hospital; Alberta Hospital Edmonton","funders":"","keywords":"Civilization; Antibiotic resistance; Antibiotics; Antimicrobial; Medicine; Intensive care medicine; Business; Engineering ethics; Political science; Environmental ethics; Engineering; Biology; Law; Microbiology; Philosophy","score_opus":0.10021291131190582,"score_gpt":0.3485476434117559,"score_spread":0.2483347320998501,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3135261731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906374,0.0018390964,0.004116071,0.0020140898,0.0005035522,0.0005449075,0.00022504824,0.000020903586,0.00009892184],"genre_scores_gemma":[0.9982472,0.00006978782,0.0009900641,0.00009478598,0.000059565955,0.000026945518,0.00010643151,0.000016567707,0.00038864862],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978403,0.00052249775,0.00045503397,0.00042790917,0.000016872522,0.00073740404],"domain_scores_gemma":[0.99865097,0.0005509517,0.000073372925,0.00037628057,0.0003265279,0.000021876816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019174165,0.00012178209,0.00038170925,0.00020338676,0.00039715416,0.0000145652475,0.00043711608,0.00028492496,0.00003470896],"category_scores_gemma":[0.00019570164,0.00009460231,0.0000697938,0.00025116434,0.00027465395,0.000047162743,0.00029136747,0.00029519282,0.00008376038],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009891308,0.000083198625,0.0005708648,0.000110455025,0.000075972785,0.0000031988493,0.00050942186,0.00003443693,0.9884064,0.009550412,0.0003026615,0.00025404742],"study_design_scores_gemma":[0.0016281741,0.00023922829,0.007046122,0.00065277726,0.000018667237,0.00017760402,0.0049530095,0.00001995654,0.9533813,0.00007514563,0.03151003,0.00029800585],"about_ca_topic_score_codex":0.000061908126,"about_ca_topic_score_gemma":0.00095450477,"teacher_disagreement_score":0.035025135,"about_ca_system_score_codex":0.0001222406,"about_ca_system_score_gemma":0.00028036203,"threshold_uncertainty_score":0.38577703},"labels":[],"label_agreement":null},{"id":"W3137207352","doi":"10.3390/microbiolres12010016","title":"In-Silico Pangenomics of SARS-CoV-2 Isolates Reveal Evidence for Subtle Adaptive Expression Strategies, Continued Clonal Evolution, and Sub-Clonal Emergences, Despite Genome Stability","year":2021,"lang":"en","type":"article","venue":"Microbiology Research","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; McGill University","funders":"University of Hail","keywords":"Biology; Genetics; Phylogenetic tree; Genome; Indel; Molecular evolution; Genome evolution; In silico; Caenorhabditis; Evolutionary biology; Most recent common ancestor; Phylogenetics; Gene; Computational biology; Genotype; Single-nucleotide polymorphism","score_opus":0.18650659628941732,"score_gpt":0.42067176240817017,"score_spread":0.23416516611875285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3137207352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9827503,0.014968059,0.00029524745,0.0004747695,0.00009007797,0.001111288,0.00022893278,0.00001596541,0.00006538776],"genre_scores_gemma":[0.99802667,0.00018670424,0.0008060065,0.0005840261,0.00013131746,0.00015052596,0.000048537036,0.000026765876,0.000039421575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.996428,0.00083877094,0.0006541533,0.0008945038,0.00025092743,0.0009336584],"domain_scores_gemma":[0.9963805,0.0013254326,0.000112734466,0.0004995171,0.0016217142,0.000060085782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027929146,0.00023434903,0.0006284802,0.00034070527,0.00019309584,0.00003385118,0.00032383384,0.00036578492,0.000028885943],"category_scores_gemma":[0.0011884124,0.00021301577,0.00013332808,0.00071277074,0.0012550869,0.00022657754,0.00042424022,0.00076709845,0.000015204636],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036042011,0.00026401202,0.071578495,0.00033860162,0.000064275366,0.000040825507,0.0005476656,3.6602682e-7,0.92270076,0.00019200591,0.00053892256,0.0001298484],"study_design_scores_gemma":[0.0015879276,0.0009158189,0.036573727,0.00021192787,0.000019413588,0.000100403864,0.0010144375,0.00006866932,0.9539424,0.0013775736,0.004001215,0.00018649407],"about_ca_topic_score_codex":0.00059782946,"about_ca_topic_score_gemma":0.0014176412,"teacher_disagreement_score":0.03500477,"about_ca_system_score_codex":0.00038349786,"about_ca_system_score_gemma":0.0020750072,"threshold_uncertainty_score":0.86865306},"labels":[],"label_agreement":null},{"id":"W3144996345","doi":"10.3390/microbiolres12020022","title":"Software Benchmark—Classification Tree Algorithms for Cell Atlases Annotation Using Single-Cell RNA-Sequencing Data","year":2021,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Benchmark (surveying); Computer science; Precision and recall; Tree (set theory); Algorithm; Annotation; Software; Data mining; Artificial intelligence; F1 score; Machine learning; Mathematics","score_opus":0.26647713871822276,"score_gpt":0.371360545798595,"score_spread":0.10488340708037225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3144996345","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9590531,0.0022121312,0.036827706,0.00014111257,0.00032292504,0.00042265153,0.0006307502,0.000022462962,0.0003671766],"genre_scores_gemma":[0.93891275,0.00022899789,0.044138353,0.0001608473,0.00052738294,0.000036700207,0.014315357,0.000064262014,0.0016153555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976368,0.0003530185,0.00034206986,0.0009485987,0.00011136639,0.000608143],"domain_scores_gemma":[0.99806756,0.00017590211,0.000094950796,0.0008793038,0.0006904725,0.00009182175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073234364,0.0001983774,0.0002186646,0.00011335313,0.0003668626,0.00007556616,0.00056778843,0.0003789908,0.0000300427],"category_scores_gemma":[0.0003785088,0.00020728893,0.00009222297,0.0002574485,0.00024877445,0.00001699275,0.00031197752,0.0002596373,0.0000112344915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103220285,0.0002252113,0.00085992017,0.0000929596,0.000028453953,0.00000798207,0.000055952256,0.000047512942,0.991899,0.0000036561446,0.0026949772,0.0039811675],"study_design_scores_gemma":[0.0009078696,0.0003249913,0.000085760636,0.000024362875,0.000026470143,0.0000407064,0.0003040836,0.0016808964,0.97770524,0.000037402475,0.01862225,0.0002399655],"about_ca_topic_score_codex":0.00007054259,"about_ca_topic_score_gemma":0.00018342953,"teacher_disagreement_score":0.02014034,"about_ca_system_score_codex":0.000108847875,"about_ca_system_score_gemma":0.0004953662,"threshold_uncertainty_score":0.8452997},"labels":[],"label_agreement":null},{"id":"W3203437580","doi":"10.3390/microbiolres12040055","title":"Bioinformatics Analysis Identifies a Small ORF in the Genome of Fish Nidoviruses of Genus Oncotshavirus Predicted to Encode a Novel Integral Protein","year":2021,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"ENCODE; Biology; Genome; Open reading frame; Subfamily; Genetics; Gene; Computational biology; Peptide sequence","score_opus":0.060784025848010785,"score_gpt":0.3217345094054388,"score_spread":0.260950483557428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203437580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948898,0.0008370467,0.0003694718,0.00064528605,0.000085492225,0.0009912854,0.0015759249,0.00002075733,0.0005849481],"genre_scores_gemma":[0.9940975,0.00005521728,0.000538435,0.00040148429,0.000018815732,0.00011975526,0.001644242,0.000015855274,0.0031087366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971021,0.00085199706,0.0008326868,0.00043841623,0.00007645086,0.00069839583],"domain_scores_gemma":[0.9980593,0.00027790104,0.00019785635,0.00073281385,0.0006977889,0.000034377354],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014580782,0.00023825011,0.00066591287,0.0010355755,0.00014751636,0.00004079448,0.0010877255,0.00036200485,0.00048625108],"category_scores_gemma":[0.00054564356,0.00017251381,0.0002824212,0.0028463816,0.00077486096,0.00009261723,0.0007207344,0.0005482436,0.00010516801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027574933,0.00055118604,0.0022700678,0.00013506418,0.0011305655,0.000018778415,0.0045047305,0.000022709886,0.9876006,0.00023697512,0.002999456,0.0002540935],"study_design_scores_gemma":[0.0024204068,0.0005173364,0.021760192,0.0001778386,0.0006003764,0.00007340609,0.013560887,0.00000846922,0.9148806,0.00009277492,0.045470238,0.0004375059],"about_ca_topic_score_codex":0.00069947855,"about_ca_topic_score_gemma":0.004619593,"teacher_disagreement_score":0.07272006,"about_ca_system_score_codex":0.00007143589,"about_ca_system_score_gemma":0.00020532019,"threshold_uncertainty_score":0.7034909},"labels":[],"label_agreement":null},{"id":"W4200045526","doi":"10.3390/microbiolres13010003","title":"Human and Companion Animal Proteus mirabilis Sharing","year":2021,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Urinary Tract Infections Management","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fundação para a Ciência e a Tecnologia; Institute of Veterinary Bacteriology, University of Bern; Royal Veterinary College; Ontario Veterinary College, University of Guelph; Freie Universität Berlin; Universidade de Lisboa; Joint Programming Initiative on Antimicrobial Resistance; University of Bern","keywords":"Proteus mirabilis; Biology; Microbiology; Feces; Veterinary medicine; Colonization; UPGMA; Companion animal; MacConkey agar; Agar plate; Escherichia coli; Medicine; Bacteria; Genetics; Genotype","score_opus":0.1230114436509967,"score_gpt":0.422438478108021,"score_spread":0.2994270344570243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200045526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899613,0.000421539,0.0000051351835,0.0024386754,0.00003534673,0.00046619968,0.000003987568,0.00004845388,0.006619332],"genre_scores_gemma":[0.9930342,0.000029530484,0.0003631647,0.00009193862,0.00007816562,0.000050714298,0.000049990475,0.000014107077,0.0062881913],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988562,0.0001687125,0.00015244196,0.00039390562,0.000070536946,0.00035821152],"domain_scores_gemma":[0.999307,0.000047547055,0.000017472548,0.0003293763,0.000223173,0.00007544645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063892954,0.00008220305,0.00017582854,0.00020248203,0.00027628356,0.000028880086,0.000079039055,0.00009577002,0.00051821093],"category_scores_gemma":[0.00009054353,0.00007726487,0.00003407553,0.0002846146,0.00026172173,0.000040513496,0.00044819966,0.0005032269,0.000121638455],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038010174,0.000676238,0.06710991,0.00011309113,0.000057821624,0.00020664718,0.0000816647,3.2465056e-7,0.9287711,0.00062227156,0.0018620373,0.000460874],"study_design_scores_gemma":[0.0036216998,0.006453191,0.5259169,0.00024784665,0.00007090524,0.0052956142,0.0007883814,0.00005371588,0.23233713,0.0007710031,0.22407426,0.00036936902],"about_ca_topic_score_codex":0.000078245466,"about_ca_topic_score_gemma":0.00003897701,"teacher_disagreement_score":0.69643396,"about_ca_system_score_codex":0.00009890332,"about_ca_system_score_gemma":0.0000400652,"threshold_uncertainty_score":0.5674047},"labels":[],"label_agreement":null},{"id":"W4210377984","doi":"10.3390/microbiolres13010004","title":"Molecular Diagnosis, Antimicrobial Resistance Profiles and Disease Patterns of Gram-Positive Pathogens Recovered from Clinical Infections in Major Ha’il Hospitals","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; McGill University","funders":"University of Hail","keywords":"Staphylococcus epidermidis; Antibiotic resistance; Medicine; Penicillin; Cefoxitin; Cefotaxime; Staphylococcus aureus; Antibiotics; Microbiology; Multiple drug resistance; Antimicrobial; Drug resistance; Internal medicine; Biology; Bacteria","score_opus":0.027799163550214303,"score_gpt":0.35092588683895304,"score_spread":0.32312672328873876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210377984","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98025876,0.0016884814,0.000043282387,0.0025104524,0.00019798453,0.001639207,0.013560324,0.000030433088,0.000071077964],"genre_scores_gemma":[0.99637324,0.0009099412,0.0003890381,0.00041231947,0.00007152423,0.00040344807,0.0011264925,0.00005180594,0.00026220572],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9954745,0.0017599657,0.00083439756,0.00096221344,0.00023372837,0.0007351725],"domain_scores_gemma":[0.99738044,0.0011636767,0.00020053456,0.0006259251,0.00033974348,0.00028965846],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013597507,0.0002600677,0.0007560589,0.0004689568,0.00031774066,0.000024177549,0.00031104666,0.00018722434,0.00025208187],"category_scores_gemma":[0.001404955,0.00026908412,0.00023004023,0.00064980786,0.00094513653,0.00006358729,0.000706522,0.0013086406,0.000013855672],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013165323,0.000762709,0.5640293,0.00010627787,0.00012895117,0.0005669643,0.00011002669,0.0000041657067,0.4289331,0.00007035844,0.0037741992,0.00019745337],"study_design_scores_gemma":[0.008994003,0.0022278526,0.83152485,0.0013599176,0.0002890092,0.00010772197,0.0008174755,0.000009440232,0.13926077,0.0011467527,0.013359267,0.0009029424],"about_ca_topic_score_codex":0.0005516957,"about_ca_topic_score_gemma":0.0004935577,"teacher_disagreement_score":0.28967232,"about_ca_system_score_codex":0.00023346917,"about_ca_system_score_gemma":0.00050176616,"threshold_uncertainty_score":0.99997616},"labels":[],"label_agreement":null},{"id":"W4214707701","doi":"10.3390/microbiolres13010012","title":"Characterization of Alistipes montrealensis sp. nov., Isolated from Human Feces of a Patient with Metastatic Melanoma Treated with Immune Checkpoint Inhibitors","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Université de Montréal","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Terry Fox Research Institute; McGill University Health Centre","keywords":"Biology; Microbiology; Strain (injury); Obligate anaerobe; Feces; Bacteria; Obligate; Genetics; Ecology; Anatomy","score_opus":0.015303654722971021,"score_gpt":0.2502856114508816,"score_spread":0.23498195672791056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4214707701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766105,0.0007639855,0.000009058342,0.00005859265,0.000019912339,0.00038250844,0.0010504058,0.0000022616546,0.00005221439],"genre_scores_gemma":[0.99799347,0.000075718126,0.00013950975,0.000011491393,0.000016529311,0.000075369746,0.0015890275,0.000022545173,0.0000763284],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985377,0.00035113285,0.0003735443,0.00036072053,0.000106475614,0.000270422],"domain_scores_gemma":[0.9990942,0.000031353225,0.00023555219,0.0003122013,0.00029307406,0.000033660617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002401569,0.00015819065,0.00033829358,0.00012827321,0.0001963655,0.000005676376,0.00018547419,0.00005895512,0.00006804873],"category_scores_gemma":[0.000014569878,0.00012055089,0.000059908,0.00023958804,0.0003701963,8.54278e-7,0.00029180708,0.00013762222,6.4494856e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092804246,0.00020548367,0.016131122,0.000020319281,0.00050458056,0.000009287224,0.00038329998,0.000048911777,0.98152614,0.00000461346,0.000023910097,0.00021430965],"study_design_scores_gemma":[0.0009170721,0.003914559,0.015187493,0.000017659715,0.0000494894,0.00003133445,0.00053817633,0.000005882192,0.9782436,0.0000102803315,0.00094690203,0.00013755099],"about_ca_topic_score_codex":0.001729279,"about_ca_topic_score_gemma":0.0003249974,"teacher_disagreement_score":0.0037090753,"about_ca_system_score_codex":0.000022956243,"about_ca_system_score_gemma":0.000062166015,"threshold_uncertainty_score":0.49159226},"labels":[],"label_agreement":null},{"id":"W4280500423","doi":"10.3390/microbiolres13020019","title":"Review of Treatments for Oropharyngeal Fungal Infections in HIV/AIDS Patients","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Laurentian University","funders":"","keywords":"Fluconazole; Medicine; Miconazole; Nystatin; Esophageal candidiasis; Thrush; Adverse effect; Amphotericin B; Posaconazole; Clinical trial; Dermatology; Internal medicine; Human immunodeficiency virus (HIV); Intensive care medicine; Antifungal; Immunology; Viral disease; Cancer","score_opus":0.05859588736409496,"score_gpt":0.40223665210265147,"score_spread":0.34364076473855654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280500423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98998415,0.007185674,0.0000053394165,0.00033434524,0.00006738466,0.0013787057,0.0003998252,0.000008555956,0.0006360106],"genre_scores_gemma":[0.9935477,0.002031156,0.00013513681,0.0003055753,0.000022000047,0.00037084718,0.00054745784,0.000012094944,0.003028068],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99855083,0.00041847362,0.0003003493,0.00027693945,0.00010966385,0.00034374892],"domain_scores_gemma":[0.9991356,0.00023088447,0.000041620922,0.00025763354,0.00028464475,0.00004961812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010584738,0.00007865487,0.00036469178,0.00020721742,0.00016580436,0.0000014474867,0.000109967186,0.000052681837,0.000715831],"category_scores_gemma":[0.0004048632,0.00006698107,0.00011229071,0.00046461186,0.00017625501,0.00002250581,0.00014199727,0.00036349753,0.000020874968],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068091,0.0015838925,0.91171753,0.0016605213,0.00006535727,0.000008178017,0.00007515747,4.099296e-7,0.06059837,0.000061195264,0.02162535,0.0019231065],"study_design_scores_gemma":[0.021864433,0.028741684,0.67662024,0.0040875603,0.0003179343,0.00015505916,0.0008744993,0.000015328402,0.01307291,0.00045861024,0.25325564,0.0005361327],"about_ca_topic_score_codex":0.00004336889,"about_ca_topic_score_gemma":0.00003491741,"teacher_disagreement_score":0.23509733,"about_ca_system_score_codex":0.00029024013,"about_ca_system_score_gemma":0.00019294463,"threshold_uncertainty_score":0.78378475},"labels":[],"label_agreement":null},{"id":"W4280558569","doi":"10.3390/microbiolres13020020","title":"Assessing Microbial Monitoring Methods for Challenging Environmental Strains and Cultures","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Genome Canada","keywords":"Fastidious organism; Pseudomonas putida; Biology; 16S ribosomal RNA; Bacteria; Bacillus subtilis; Bacterial growth; Biomass (ecology); Environmental DNA; Microbiology; Operational taxonomic unit; DNA extraction; Pseudomonas; Food science; Polymerase chain reaction; Ecology; Biochemistry; Genetics; Gene","score_opus":0.1561300714436448,"score_gpt":0.4897202058265604,"score_spread":0.3335901343829156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280558569","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719477,0.00059181324,0.0003773807,0.0006102355,0.00016121022,0.00038135957,0.00007540686,0.000022428054,0.00058542186],"genre_scores_gemma":[0.98982877,0.00010591626,0.009189906,0.000108987166,0.00007153496,0.00003676809,0.00003524806,0.000021619422,0.00060125376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790883,0.00059491984,0.00017019646,0.000490151,0.000115253184,0.0007206615],"domain_scores_gemma":[0.99944353,0.00022953707,0.00003497932,0.00014161045,0.0000017318288,0.00014859177],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015742278,0.0001468507,0.00016362249,0.000058485883,0.0013136326,0.000057174133,0.00028227508,0.00006989653,0.0015504134],"category_scores_gemma":[0.000038104085,0.00013664768,0.000055660632,0.00010877309,0.0007395534,0.00016699202,0.0013246292,0.000561338,0.00005248668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00001803038,0.00012319969,0.0057026283,0.0000081953385,0.000015837019,0.0000057791144,0.00031326356,0.00012535273,0.9750965,0.000009934531,0.00038872001,0.018192526],"study_design_scores_gemma":[0.0015827129,0.0005136862,0.035591245,0.000018450468,0.000029959936,0.00044563206,0.006076225,0.0006482247,0.8200413,0.0006982058,0.13376121,0.0005931157],"about_ca_topic_score_codex":0.000022685224,"about_ca_topic_score_gemma":8.40081e-7,"teacher_disagreement_score":0.15505521,"about_ca_system_score_codex":0.00033632296,"about_ca_system_score_gemma":0.000005815287,"threshold_uncertainty_score":0.9999865},"labels":[],"label_agreement":null},{"id":"W4283581251","doi":"10.3390/microbiolres13030030","title":"Microbiological Aspects of Unique, Rare, and Unusual Fatty Acids Derived from Natural Amides and Their Pharmacological Profile","year":2022,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College","funders":"","keywords":"Biological activity; Antifungal; Chemistry; Antimicrobial; Fatty acid; Biochemistry; Organic chemistry; Biology; Microbiology","score_opus":0.04703308475372132,"score_gpt":0.3307238459582799,"score_spread":0.2836907612045586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283581251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889588,0.006172497,0.0000013981355,0.0030606699,0.00013115889,0.0008135063,0.0005935713,0.000046436064,0.00022196388],"genre_scores_gemma":[0.9977408,0.00037161895,0.0005206315,0.00049721316,0.00011506684,0.000014684146,0.0003404063,0.000016656435,0.00038291042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99721533,0.0010503202,0.00032939843,0.0007355054,0.00009072333,0.0005787062],"domain_scores_gemma":[0.99868506,0.00064704864,0.00008276209,0.00021989092,0.00023973444,0.00012552418],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00092128594,0.00024033665,0.0005986945,0.00021721677,0.0004123642,0.00001875663,0.00026197376,0.00023021465,0.0011547027],"category_scores_gemma":[0.0003239139,0.00014984095,0.00008269869,0.0003657861,0.001546871,0.000043278604,0.0011595794,0.0014072952,0.0000072501284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013364415,0.00021346303,0.0030583267,0.000042486812,0.00016828417,0.000058496295,0.00016933051,1.126995e-7,0.9889537,0.00008679699,0.00218296,0.003729577],"study_design_scores_gemma":[0.0012179522,0.001087404,0.016054288,0.00002447894,0.000034900568,0.0005765058,0.0004679482,0.00001042768,0.97232574,0.00028432548,0.0077380375,0.00017799798],"about_ca_topic_score_codex":0.000117202355,"about_ca_topic_score_gemma":0.000014169513,"teacher_disagreement_score":0.016627992,"about_ca_system_score_codex":0.000087245215,"about_ca_system_score_gemma":0.00011740273,"threshold_uncertainty_score":0.99975836},"labels":[],"label_agreement":null},{"id":"W4317745954","doi":"10.3390/microbiolres14010011","title":"Potential Mammalian Vector-Borne Diseases in Live and Wet Markets in Indonesia and Myanmar","year":2023,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Zoonotic diseases and public health","field":"Medicine","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wildlife Conservation Society Canada","funders":"","keywords":"Wildlife trade; Domestication; Vector (molecular biology); Wildlife; Japanese encephalitis; Geography; Biology; China; Mammal; Livestock; Chikungunya; Zoology; Socioeconomics; Outbreak; Encephalitis; Virology; Ecology; Virus; Archaeology","score_opus":0.02872049727375475,"score_gpt":0.3489342485384838,"score_spread":0.32021375126472906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4317745954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98447824,0.0012302708,3.6104385e-7,0.013361522,0.00006295563,0.0005117344,0.000092969014,0.000026557824,0.00023540454],"genre_scores_gemma":[0.9982036,0.0005904566,0.000015237819,0.00022064474,0.00008666049,0.00004126316,0.00017483952,0.000016610386,0.00065072294],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99796164,0.0005465908,0.00023583573,0.00042507678,0.0001045988,0.0007262819],"domain_scores_gemma":[0.9990946,0.00028907417,0.000020301124,0.00020493224,0.00006684844,0.0003242281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012234285,0.0001159097,0.0003071429,0.0006858415,0.000075821874,0.000024601679,0.00009104301,0.00016551862,0.00028197572],"category_scores_gemma":[0.00029934858,0.00010071426,0.00002664704,0.0006492252,0.00036749654,0.000047616188,0.00022783717,0.00044112303,0.000081716375],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014648046,0.00033888844,0.9568358,0.00060049695,0.00003533875,0.0018272166,0.0005628556,0.0000010187821,0.016729502,0.0003094748,0.008781582,0.012513002],"study_design_scores_gemma":[0.0019524597,0.00024487652,0.99415314,0.00010305224,0.000008194573,0.00010252683,0.0007398354,0.00007079469,0.000033334454,0.00016624572,0.0023377237,0.00008784076],"about_ca_topic_score_codex":0.000607492,"about_ca_topic_score_gemma":0.00022965492,"teacher_disagreement_score":0.037317295,"about_ca_system_score_codex":0.00006863286,"about_ca_system_score_gemma":0.00027113289,"threshold_uncertainty_score":0.4107008},"labels":[],"label_agreement":null},{"id":"W4318052358","doi":"10.3390/microbiolres14010012","title":"Heterosigma akashiwo, a Fish-Killing Flagellate","year":2023,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Marine Toxins and Detection Methods","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Heterosigma akashiwo; Flagellate; Algal bloom; Biology; Fish mortality; Fish <Actinopterygii>; Ecology; Fishery; Phytoplankton; Botany","score_opus":0.09501024363392707,"score_gpt":0.38950182922784404,"score_spread":0.29449158559391697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4318052358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824681,0.0000076109695,0.00017044833,0.00075785036,0.00018391384,0.00016735995,0.00000931134,0.00013886768,0.016096506],"genre_scores_gemma":[0.96006703,0.000095822405,0.0014985331,0.00034027098,0.00010969489,0.000044399283,0.000025289619,0.000027162729,0.03779177],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980387,0.0005736489,0.00016763911,0.00042396132,0.00012333727,0.00067268184],"domain_scores_gemma":[0.99926484,0.00028113957,0.000022315484,0.00031843403,0.000015597421,0.00009769164],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0024431548,0.000097847995,0.00013259228,0.00015963874,0.00035069234,0.000030943265,0.0003186248,0.00013230865,0.006725326],"category_scores_gemma":[0.000121079,0.00008382107,0.000057698475,0.0010076981,0.0003928623,0.00005077461,0.00079631817,0.0004177737,0.009907537],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000191769,0.000014231243,0.009053621,0.0000047278245,0.0000053630365,0.000020352947,0.000092213166,0.00016045164,0.9504916,0.0000058384153,0.029208684,0.010923708],"study_design_scores_gemma":[0.0004639955,0.00027556394,0.029114801,0.000010915835,0.0000033460367,0.000093386865,0.00012445674,0.0015903834,0.20916766,0.0011432866,0.75770515,0.0003070712],"about_ca_topic_score_codex":0.00026321813,"about_ca_topic_score_gemma":0.00020823645,"teacher_disagreement_score":0.74132395,"about_ca_system_score_codex":0.00007988744,"about_ca_system_score_gemma":0.000007185673,"threshold_uncertainty_score":0.99418265},"labels":[],"label_agreement":null},{"id":"W4388531033","doi":"10.3390/microbiolres14040126","title":"Model of Pulmonary Co-Infection of Aspergillus and Pseudomonas in Immunocompetent Mice","year":2023,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"School of Medicine, Stanford University; McGill University","keywords":"In vivo; Cystic fibrosis; Microbiology; Bead; Aspergillus fumigatus; Clearance; Aspergillus; Pseudomonas aeruginosa; Lung; In vitro; Chemistry; Medicine; Biology; Bacteria; Materials science; Internal medicine; Biochemistry","score_opus":0.08107025103896869,"score_gpt":0.3991044132252678,"score_spread":0.3180341621862991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388531033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734455,0.000923025,0.000020283936,0.00036747463,0.000023471663,0.00048835995,0.00005856212,0.000019253011,0.0007550442],"genre_scores_gemma":[0.99725795,0.0013219516,0.00054122263,0.0000074575214,0.000014362005,0.00003830359,0.00007646659,0.000014553879,0.0007277351],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847925,0.0002541081,0.00033251027,0.00028738272,0.00017964003,0.00046712556],"domain_scores_gemma":[0.99889916,0.00047894297,0.000044228884,0.00024340901,0.00026611402,0.000068123714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013831545,0.000091627546,0.0003579488,0.00083857303,0.000049465492,0.0000031208106,0.00011519475,0.00012418999,0.000041579668],"category_scores_gemma":[0.00037996587,0.000079435966,0.00005069474,0.0007609246,0.0008336075,0.000044368462,0.0002271297,0.0004385785,0.00003799275],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006895663,0.00014246874,0.0396358,0.00032544014,0.000030170699,0.000029355593,0.00013097447,0.00015253453,0.9560848,0.00006320727,0.00029455262,0.0024211616],"study_design_scores_gemma":[0.003060226,0.0015126723,0.20282863,0.0005490566,0.000016747183,0.00046580177,0.00040131336,0.019140786,0.7687566,0.0011840892,0.0018754564,0.00020857844],"about_ca_topic_score_codex":0.00053600204,"about_ca_topic_score_gemma":0.000067457324,"teacher_disagreement_score":0.18732813,"about_ca_system_score_codex":0.0000823803,"about_ca_system_score_gemma":0.0001426186,"threshold_uncertainty_score":0.32393047},"labels":[],"label_agreement":null},{"id":"W4390048613","doi":"10.3390/microbiolres15010005","title":"Bioactive Diepoxy Metabolites and Highly Oxygenated Triterpenoids from Marine and Plant-Derived Bacteria and Fungi","year":2023,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College","funders":"","keywords":"Biology; Terpene; Antifungal; Plant use of endophytic fungi in defense; Terpenoid; Antimicrobial; Isolation (microbiology); Computational biology; Botany; Biochemistry; Microbiology","score_opus":0.0251162354324164,"score_gpt":0.29206972331911246,"score_spread":0.26695348788669604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390048613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99243313,0.0058125346,7.871919e-7,0.0008600163,0.000093247116,0.00025255102,0.00044284604,0.000022961296,0.00008193046],"genre_scores_gemma":[0.987037,0.008500213,0.0001833997,0.0000783379,0.00017773088,0.00001538972,0.0021228066,0.000020734327,0.0018643703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99839115,0.00026955857,0.00015976602,0.0006743238,0.000048997084,0.00045618773],"domain_scores_gemma":[0.9993906,0.00010783791,0.00003476466,0.00023881167,0.00011279038,0.00011516929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046619252,0.00017856363,0.00024858653,0.00017345673,0.00017167513,0.00004944895,0.00013454528,0.0002538364,0.000050855477],"category_scores_gemma":[0.00015267277,0.0001444712,0.000024122466,0.00020965919,0.0004340093,0.000007410383,0.0011467491,0.00026574702,0.000012787196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039054002,0.000015132663,0.008111443,0.000022318796,0.00012329362,0.000013351908,0.000056242203,2.9668637e-8,0.9813756,0.000023462773,0.0014857728,0.008382839],"study_design_scores_gemma":[0.000984694,0.00036885784,0.16698213,0.000008724446,0.00001795852,0.00007523171,0.00009305534,0.000014954156,0.7641956,0.00019841395,0.06683644,0.00022394565],"about_ca_topic_score_codex":0.0004307002,"about_ca_topic_score_gemma":0.00016350625,"teacher_disagreement_score":0.21717998,"about_ca_system_score_codex":0.0000062059903,"about_ca_system_score_gemma":0.000025149693,"threshold_uncertainty_score":0.5891364},"labels":[],"label_agreement":null},{"id":"W4401636224","doi":"10.3390/microbiolres15030103","title":"Chemical Diversity of Ketosteroids as Potential Therapeutic Agents","year":2024,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Steroid Chemistry and Biochemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College","funders":"","keywords":"Diversity (politics); Chemistry; Biochemical engineering; Engineering; Sociology; Anthropology","score_opus":0.0368289942154379,"score_gpt":0.34071617167548524,"score_spread":0.30388717746004734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401636224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99463874,0.0034011255,0.000035328347,0.00021113966,0.00015590744,0.000103786515,0.00007060778,0.000018077968,0.0013652585],"genre_scores_gemma":[0.9959713,0.0001491217,0.00002617031,0.00008772347,0.00025967747,0.000007769411,0.0002639987,0.000016391798,0.0032178096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864787,0.00010807013,0.00018204055,0.0005144238,0.00012697488,0.00042059587],"domain_scores_gemma":[0.99936557,0.000028225932,0.000023804023,0.00036303428,0.00013757597,0.00008181126],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037056988,0.00014871664,0.00015162263,0.000055870532,0.00012439601,0.000021560072,0.00050398323,0.0004020222,0.00020940117],"category_scores_gemma":[0.000048271246,0.0001345461,0.00013969163,0.00016130022,0.00047319868,0.000002935489,0.0011254607,0.00033615553,0.00008309359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017532874,0.00006867704,0.0007912714,0.00011112548,0.00014073642,0.000030710176,0.000043034768,9.399542e-7,0.9919635,0.000009133096,0.005863149,0.0008024118],"study_design_scores_gemma":[0.0002579193,0.00014146241,0.00009606095,0.000026628473,0.000015909456,0.00022640792,0.00007827944,0.0000056873155,0.9859631,0.00011015166,0.012947223,0.00013118229],"about_ca_topic_score_codex":0.00001365071,"about_ca_topic_score_gemma":9.4460137e-7,"teacher_disagreement_score":0.0070840735,"about_ca_system_score_codex":0.000026238728,"about_ca_system_score_gemma":0.000092281334,"threshold_uncertainty_score":0.5486631},"labels":[],"label_agreement":null},{"id":"W4402965791","doi":"10.3390/microbiolres15040132","title":"A Review of Bacterial Biofilm Components and Formation, Detection Methods, and Their Prevention and Control on Food Contact Surfaces","year":2024,"lang":"en","type":"review","venue":"Microbiology Research","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biofilm; Nanotechnology; Biochemical engineering; Materials science; Environmental science; Biology; Engineering; Bacteria","score_opus":0.07020686620892247,"score_gpt":0.3936527659460277,"score_spread":0.32344589973710525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4402965791","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047378078,0.9509544,0.000022230965,0.00004285535,0.00018465894,0.00100422,0.00039605759,0.000006458869,0.000011058322],"genre_scores_gemma":[0.0068580396,0.9920848,0.0001315731,0.000035200785,0.000109212626,0.000030602132,0.0006969872,0.000026296117,0.00002726151],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99705046,0.0016605518,0.0004835973,0.000498567,0.000035854595,0.00027093783],"domain_scores_gemma":[0.99925184,0.00014199213,0.00019602623,0.00022167573,0.0001265435,0.000061904815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001670252,0.00028564097,0.00093953055,0.00015974761,0.00010757352,0.000043554945,0.000094918105,0.0004892636,0.0000064708593],"category_scores_gemma":[0.00014098978,0.00019423803,0.00013140535,0.000112005655,0.00023947982,0.000006661229,0.00021434587,0.00032160422,0.0000028264242],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006126651,0.000013757054,5.1506123e-7,0.020357126,0.00017885078,3.0260733e-7,0.000009261399,1.3219407e-9,0.7432744,0.000004326892,0.0001548772,0.23594533],"study_design_scores_gemma":[0.0004596785,0.001737766,0.0000075945727,0.023177458,0.0002480431,0.00030717067,0.000014139106,0.0000012521581,0.06395105,0.000014789679,0.9098488,0.00023223892],"about_ca_topic_score_codex":0.0000113844735,"about_ca_topic_score_gemma":0.000020702593,"teacher_disagreement_score":0.90969396,"about_ca_system_score_codex":0.000018122404,"about_ca_system_score_gemma":0.0000599687,"threshold_uncertainty_score":0.7920797},"labels":[],"label_agreement":null},{"id":"W4411217135","doi":"10.3390/microbiolres16060125","title":"A Novel SARS-CoV-2-Derived Infectious Vector System","year":2025,"lang":"en","type":"article","venue":"Microbiology Research","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université du Québec à Montréal; Université du Québec à Trois-Rivières","funders":"Fonds de Recherche du Québec - Santé","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Virology; Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Vector (molecular biology); Sars virus; Medicine; Computer science; Biology; Infectious disease (medical specialty); Genetics; Pathology; Outbreak; Recombinant DNA","score_opus":0.07223334254467587,"score_gpt":0.4030818450754712,"score_spread":0.33084850253079534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411217135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9758637,0.000893704,0.00041512557,0.0012673729,0.00039918403,0.0012132431,0.000034491422,0.0002655851,0.01964761],"genre_scores_gemma":[0.9870899,0.000006063074,0.00012229886,0.011686802,0.00020738394,0.00024050336,0.000016068465,0.000041813342,0.0005892181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99673414,0.0004694165,0.00043343406,0.0008172181,0.00026964484,0.0012761146],"domain_scores_gemma":[0.99758136,0.0005894459,0.000046662222,0.00086414325,0.0008746256,0.000043761396],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016955849,0.0002667575,0.0006315415,0.0012054843,0.00038290536,0.00006676251,0.00050776417,0.00051630865,0.000012538772],"category_scores_gemma":[0.0007399835,0.00022710326,0.00019296932,0.0016386501,0.00081310584,0.000055710076,0.00055932906,0.0014485075,0.0011401712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005720176,0.00032670292,0.011001771,0.00052129425,0.00025822892,0.00014706279,0.00013016065,5.907604e-8,0.9772538,0.00091324496,0.008124739,0.00075089553],"study_design_scores_gemma":[0.0027590836,0.00043241377,0.0019601446,0.00025117578,0.0000278744,0.00051842164,0.00019317665,0.000048519447,0.8347034,0.000041292853,0.15890782,0.00015668038],"about_ca_topic_score_codex":0.0010128523,"about_ca_topic_score_gemma":0.00026190316,"teacher_disagreement_score":0.15078308,"about_ca_system_score_codex":0.0007889814,"about_ca_system_score_gemma":0.001048257,"threshold_uncertainty_score":0.99963754},"labels":[],"label_agreement":null},{"id":"W4411429166","doi":"10.3390/microbiolres16060131","title":"Genotypic Characterisation and Risk Assessment of Virulent ESBL-Producing E. coli in Chicken Meat in Tunisia: Insights from Multi-Omics Machine Learning Perspective","year":2025,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"International Development Research Centre; United States Agency for International Development","keywords":"Virulence; Biology; Colistin; Cephalosporin; Antibiotic resistance; Escherichia coli; Microbiology; Antibiotics; MacConkey agar; Gene; Genotype; Antimicrobial; Genetics","score_opus":0.021780085518273356,"score_gpt":0.34109508926754506,"score_spread":0.3193150037492717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411429166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972062,0.0017119999,0.00026530508,0.00010293403,0.00007971007,0.0004440873,0.000051369476,0.000004348927,0.00013402702],"genre_scores_gemma":[0.99600154,0.0024581065,0.0009856608,0.00001805861,0.000036491052,0.000012010245,0.00026283745,0.000013322016,0.0002119854],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997755,0.0009629549,0.00034267388,0.0005862311,0.000055341607,0.0002978166],"domain_scores_gemma":[0.99926776,0.00011451648,0.00011153354,0.00028664712,0.00019252404,0.000026995485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073302933,0.00013933294,0.00029038114,0.0002929927,0.00011209983,0.000014982846,0.00019336015,0.0002912911,0.000010641838],"category_scores_gemma":[0.0004184093,0.00013416307,0.000030895437,0.0002300081,0.00030779594,0.0000071882214,0.0003558914,0.00067268865,0.0000019318913],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013121603,0.000057824494,0.4323191,0.000014949429,0.00004012445,0.0000022195106,0.00046368229,0.000023733715,0.5667902,0.000043909477,0.000003266351,0.00010975325],"study_design_scores_gemma":[0.0010397867,0.00011458281,0.8711427,0.00006958656,0.000007871935,0.0000011519555,0.0010231445,0.0004214317,0.12570097,0.0001168347,0.00026032826,0.000101601974],"about_ca_topic_score_codex":0.002953332,"about_ca_topic_score_gemma":0.0065327836,"teacher_disagreement_score":0.44108924,"about_ca_system_score_codex":0.00016633795,"about_ca_system_score_gemma":0.00016413476,"threshold_uncertainty_score":0.5471011},"labels":[],"label_agreement":null},{"id":"W4413880490","doi":"10.3390/microbiolres16090197","title":"Metagenomic Insights into the Impact of Nutrition on Human Gut Microbiota and Associated Disease Risk","year":2025,"lang":"en","type":"article","venue":"Microbiology Research","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BP (Canada); University of Lethbridge; University of Calgary","funders":"Mitacs","keywords":"Metagenomics; Gut flora; Disease; Biology; Computational biology; Medicine; Immunology; Genetics; Internal medicine; Gene","score_opus":0.02965465378139593,"score_gpt":0.39786910536093745,"score_spread":0.3682144515795415,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413880490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99247855,0.0061939815,0.000005350339,0.0003907747,0.00005089566,0.00054693234,0.00014153578,0.0000071748464,0.00018480576],"genre_scores_gemma":[0.99654055,0.0018929127,0.000020586922,0.000113644695,0.00005085625,0.000030242292,0.00046885456,0.000014703252,0.00086763495],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997796,0.0009911093,0.00027455835,0.00047731664,0.0000428934,0.00041810639],"domain_scores_gemma":[0.9989687,0.00011219765,0.00009950124,0.00050953304,0.00022281343,0.00008721667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078808755,0.00017595397,0.0002465862,0.00024592152,0.0005438985,0.000024311199,0.00034529684,0.00026670287,0.00002209846],"category_scores_gemma":[0.00022031917,0.00012002415,0.00015010379,0.00027649925,0.0006736753,0.0000027340775,0.00030369658,0.00043414297,0.000013778871],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024469112,0.00034632685,0.0080813,0.000044252058,0.00021823372,0.0000016132532,0.00013465511,0.000005565637,0.97894543,0.000113762595,0.011659737,0.00020444694],"study_design_scores_gemma":[0.0032228394,0.0021911713,0.59796286,0.0001943632,0.000095620555,0.00000813847,0.00021802733,0.000012470742,0.3699252,0.002094038,0.023696592,0.00037865463],"about_ca_topic_score_codex":0.00066002546,"about_ca_topic_score_gemma":0.00033059105,"teacher_disagreement_score":0.60902023,"about_ca_system_score_codex":0.00010108324,"about_ca_system_score_gemma":0.000232567,"threshold_uncertainty_score":0.48944432},"labels":[],"label_agreement":null}]}